xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision eb1ec7c1db909b5b8e5e7107245f4f2eaa6849e7)
1a30f8f8cSSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>    /*I "petscmat.h" I*/
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
6a30f8f8cSSatish Balay 
76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
96214f412SHong Zhang #endif
10b147fbf3SStefano Zampini 
11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
13b147fbf3SStefano Zampini {
14b147fbf3SStefano Zampini   Mat            preallocator;
15b147fbf3SStefano Zampini   PetscInt       r,rstart,rend;
16b147fbf3SStefano Zampini   PetscInt       bs,i,m,n,M,N;
17b147fbf3SStefano Zampini   PetscBool      cong = PETSC_TRUE;
18b147fbf3SStefano Zampini   PetscErrorCode ierr;
19b147fbf3SStefano Zampini 
20b147fbf3SStefano Zampini   PetscFunctionBegin;
21b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
22b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B,nm,2);
23b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
24b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i],MAT_CLASSID,3);
25b147fbf3SStefano Zampini     ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr);
26b147fbf3SStefano Zampini     if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts");
27b147fbf3SStefano Zampini   }
28b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B,fill,5);
29b147fbf3SStefano Zampini   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
30b147fbf3SStefano Zampini   ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr);
31b147fbf3SStefano Zampini   ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr);
32b147fbf3SStefano Zampini   ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr);
33b147fbf3SStefano Zampini   ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr);
34b147fbf3SStefano Zampini   ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr);
35b147fbf3SStefano Zampini   ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr);
36b147fbf3SStefano Zampini   ierr = MatSetUp(preallocator);CHKERRQ(ierr);
37b147fbf3SStefano Zampini   ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr);
38b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
39b147fbf3SStefano Zampini     PetscInt          ncols;
40b147fbf3SStefano Zampini     const PetscInt    *row;
41b147fbf3SStefano Zampini     const PetscScalar *vals;
42b147fbf3SStefano Zampini 
43b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
44b147fbf3SStefano Zampini       ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
45b147fbf3SStefano Zampini       ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
46b147fbf3SStefano Zampini       if (symm && symm[i]) {
47b147fbf3SStefano Zampini         ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
48b147fbf3SStefano Zampini       }
49b147fbf3SStefano Zampini       ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr);
50b147fbf3SStefano Zampini     }
51b147fbf3SStefano Zampini   }
52b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
53b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
54b147fbf3SStefano Zampini   ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr);
55b147fbf3SStefano Zampini   ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
56b147fbf3SStefano Zampini   PetscFunctionReturn(0);
57b147fbf3SStefano Zampini }
58b147fbf3SStefano Zampini 
5928d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
60b147fbf3SStefano Zampini {
61b147fbf3SStefano Zampini   Mat            B;
62b147fbf3SStefano Zampini   PetscErrorCode ierr;
63b147fbf3SStefano Zampini   PetscInt       r;
64b147fbf3SStefano Zampini 
65b147fbf3SStefano Zampini   PetscFunctionBegin;
66b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
6728d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE,isdense;
68b147fbf3SStefano Zampini     PetscInt  bs;
69b147fbf3SStefano Zampini 
70b147fbf3SStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
71b147fbf3SStefano Zampini     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
72b147fbf3SStefano Zampini     ierr = MatSetType(B,newtype);CHKERRQ(ierr);
73b147fbf3SStefano Zampini     ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr);
74b147fbf3SStefano Zampini     ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr);
75b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
76b147fbf3SStefano Zampini     ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
7728d58a37SPierre Jolivet     ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr);
7828d58a37SPierre Jolivet     if (!isdense) {
79b147fbf3SStefano Zampini       ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
80b147fbf3SStefano Zampini       ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr);
81b147fbf3SStefano Zampini       ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
8228d58a37SPierre Jolivet     } else {
8328d58a37SPierre Jolivet       ierr = MatSetUp(B);CHKERRQ(ierr);
8428d58a37SPierre Jolivet     }
8528d58a37SPierre Jolivet   } else {
8628d58a37SPierre Jolivet     B    = *newmat;
8728d58a37SPierre Jolivet     ierr = MatZeroEntries(B);CHKERRQ(ierr);
8828d58a37SPierre Jolivet   }
89b147fbf3SStefano Zampini 
90b147fbf3SStefano Zampini   ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
91b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
92b147fbf3SStefano Zampini     PetscInt          ncols;
93b147fbf3SStefano Zampini     const PetscInt    *row;
94b147fbf3SStefano Zampini     const PetscScalar *vals;
95b147fbf3SStefano Zampini 
96b147fbf3SStefano Zampini     ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
97b147fbf3SStefano Zampini     ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr);
98*eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
99*eb1ec7c1SStefano Zampini     if (A->hermitian) {
100*eb1ec7c1SStefano Zampini       PetscInt i;
101*eb1ec7c1SStefano Zampini       for (i = 0; i < ncols; i++) {
102*eb1ec7c1SStefano Zampini         ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr);
103*eb1ec7c1SStefano Zampini       }
104*eb1ec7c1SStefano Zampini     } else {
105b147fbf3SStefano Zampini       ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
106*eb1ec7c1SStefano Zampini     }
107*eb1ec7c1SStefano Zampini #else
108*eb1ec7c1SStefano Zampini     ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr);
109*eb1ec7c1SStefano Zampini #endif
110b147fbf3SStefano Zampini     ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr);
111b147fbf3SStefano Zampini   }
112b147fbf3SStefano Zampini   ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
113b147fbf3SStefano Zampini   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
114b147fbf3SStefano Zampini   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
115b147fbf3SStefano Zampini 
116b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
117b147fbf3SStefano Zampini     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
118b147fbf3SStefano Zampini   } else {
119b147fbf3SStefano Zampini     *newmat = B;
120b147fbf3SStefano Zampini   }
121b147fbf3SStefano Zampini   PetscFunctionReturn(0);
122b147fbf3SStefano Zampini }
123b147fbf3SStefano Zampini 
1247087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPISBAIJ(Mat mat)
125a30f8f8cSSatish Balay {
126f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
127dfbe8321SBarry Smith   PetscErrorCode ierr;
128a30f8f8cSSatish Balay 
129a30f8f8cSSatish Balay   PetscFunctionBegin;
130a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
131a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
132a30f8f8cSSatish Balay   PetscFunctionReturn(0);
133a30f8f8cSSatish Balay }
134a30f8f8cSSatish Balay 
1357087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPISBAIJ(Mat mat)
136a30f8f8cSSatish Balay {
137f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ*)mat->data;
138dfbe8321SBarry Smith   PetscErrorCode ierr;
139a30f8f8cSSatish Balay 
140a30f8f8cSSatish Balay   PetscFunctionBegin;
141a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
142a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
143a30f8f8cSSatish Balay   PetscFunctionReturn(0);
144a30f8f8cSSatish Balay }
145a30f8f8cSSatish Balay 
146d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol)      \
147a30f8f8cSSatish Balay   { \
148a30f8f8cSSatish Balay     brow = row/bs;  \
149a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
150a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
151a30f8f8cSSatish Balay     bcol = col/bs; \
152a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
153a30f8f8cSSatish Balay     low  = 0; high = nrow; \
154a30f8f8cSSatish Balay     while (high-low > 3) { \
155a30f8f8cSSatish Balay       t = (low+high)/2; \
156a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
157a30f8f8cSSatish Balay       else              low  = t; \
158a30f8f8cSSatish Balay     } \
159a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
160a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
161a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
162a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
163a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
164a30f8f8cSSatish Balay         else                    *bap  = value;  \
165a30f8f8cSSatish Balay         goto a_noinsert; \
166a30f8f8cSSatish Balay       } \
167a30f8f8cSSatish Balay     } \
168a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
169d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
170fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
171a30f8f8cSSatish Balay     N = nrow++ - 1;  \
172a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
173580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
174580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
175580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
176a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
177a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
178e56f5c9eSBarry Smith     A->nonzerostate++;\
179a30f8f8cSSatish Balay a_noinsert:; \
180a30f8f8cSSatish Balay     ailen[brow] = nrow; \
181a30f8f8cSSatish Balay   }
182e5e170daSBarry Smith 
183d40312a9SBarry Smith #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \
184a30f8f8cSSatish Balay   { \
185a30f8f8cSSatish Balay     brow = row/bs;  \
186a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
187a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
188a30f8f8cSSatish Balay     bcol = col/bs; \
189a30f8f8cSSatish Balay     ridx = row % bs; cidx = col % bs; \
190a30f8f8cSSatish Balay     low  = 0; high = nrow; \
191a30f8f8cSSatish Balay     while (high-low > 3) { \
192a30f8f8cSSatish Balay       t = (low+high)/2; \
193a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
194a30f8f8cSSatish Balay       else              low  = t; \
195a30f8f8cSSatish Balay     } \
196a30f8f8cSSatish Balay     for (_i=low; _i<high; _i++) { \
197a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
198a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
199a30f8f8cSSatish Balay         bap = ap + bs2*_i + bs*cidx + ridx; \
200a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
201a30f8f8cSSatish Balay         else                    *bap  = value;  \
202a30f8f8cSSatish Balay         goto b_noinsert; \
203a30f8f8cSSatish Balay       } \
204a30f8f8cSSatish Balay     } \
205a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
206d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
207fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
208a30f8f8cSSatish Balay     N = nrow++ - 1;  \
209a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
210580bdb30SBarry Smith     ierr  = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \
211580bdb30SBarry Smith     ierr  = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
212580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \
213a30f8f8cSSatish Balay     rp[_i]                      = bcol;  \
214a30f8f8cSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
215e56f5c9eSBarry Smith     B->nonzerostate++;\
216a30f8f8cSSatish Balay b_noinsert:; \
217a30f8f8cSSatish Balay     bilen[brow] = nrow; \
218a30f8f8cSSatish Balay   }
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
221476417e5SBarry Smith    Any a(i,j) with i>j input by user is ingored or generates an error
222a30f8f8cSSatish Balay */
223dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
224a30f8f8cSSatish Balay {
225a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
226a30f8f8cSSatish Balay   MatScalar      value;
227ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
228dfbe8321SBarry Smith   PetscErrorCode ierr;
2291302d50aSBarry Smith   PetscInt       i,j,row,col;
230d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
231d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
232d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
233a30f8f8cSSatish Balay 
234a30f8f8cSSatish Balay   /* Some Variables required in the macro */
235a30f8f8cSSatish Balay   Mat          A     = baij->A;
236a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ*)(A)->data;
2371302d50aSBarry Smith   PetscInt     *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
238a30f8f8cSSatish Balay   MatScalar    *aa   =a->a;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   Mat         B     = baij->B;
241a30f8f8cSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
2421302d50aSBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
243a30f8f8cSSatish Balay   MatScalar   *ba   =b->a;
244a30f8f8cSSatish Balay 
2451302d50aSBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
2461302d50aSBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
247a30f8f8cSSatish Balay   MatScalar *ap,*bap;
248a30f8f8cSSatish Balay 
249a30f8f8cSSatish Balay   /* for stash */
2500298fd71SBarry Smith   PetscInt  n_loc, *in_loc = NULL;
2510298fd71SBarry Smith   MatScalar *v_loc = NULL;
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   PetscFunctionBegin;
254a30f8f8cSSatish Balay   if (!baij->donotstash) {
25559ffdab8SBarry Smith     if (n > baij->n_loc) {
25659ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
25759ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
258785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr);
259785e854fSJed Brown       ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr);
26026fbe8dcSKarl Rupp 
26159ffdab8SBarry Smith       baij->n_loc = n;
26259ffdab8SBarry Smith     }
26359ffdab8SBarry Smith     in_loc = baij->in_loc;
26459ffdab8SBarry Smith     v_loc  = baij->v_loc;
265a30f8f8cSSatish Balay   }
266a30f8f8cSSatish Balay 
267a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
268a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2692515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
270e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
271a30f8f8cSSatish Balay #endif
272a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
273a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
274a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
27501b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs) {
27601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
27701b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
27826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
27901b2bd88SHong Zhang         }
280a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {  /* diag entry (A) */
281a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;         /* local col index */
282a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
283a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
284db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
285db4deed7SKarl Rupp           else             value = v[i+j*m];
286d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
287a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
288a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2892515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
290cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
291a30f8f8cSSatish Balay #endif
292a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
293a30f8f8cSSatish Balay           if (mat->was_assembled) {
294a30f8f8cSSatish Balay             if (!baij->colmap) {
295ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
296a30f8f8cSSatish Balay             }
297a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
298a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
29971730473SSatish Balay             col  = col - 1;
300a30f8f8cSSatish Balay #else
30171730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
302a30f8f8cSSatish Balay #endif
303a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
304ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
305a30f8f8cSSatish Balay               col  =  in[j];
306a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
307a30f8f8cSSatish Balay               B    = baij->B;
308a30f8f8cSSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
309a30f8f8cSSatish Balay               bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
310a30f8f8cSSatish Balay               ba   = b->a;
31171730473SSatish Balay             } else col += in[j]%bs;
312a30f8f8cSSatish Balay           } else col = in[j];
313db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
314db4deed7SKarl Rupp           else             value = v[i+j*m];
315d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
316a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay       }
319a30f8f8cSSatish Balay     } else {  /* off processor entry */
3204cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
321a30f8f8cSSatish Balay       if (!baij->donotstash) {
3225080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
323a30f8f8cSSatish Balay         n_loc          = 0;
324a30f8f8cSSatish Balay         for (j=0; j<n; j++) {
325f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
326a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
327a30f8f8cSSatish Balay           if (roworiented) {
328a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
329a30f8f8cSSatish Balay           } else {
330a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
331a30f8f8cSSatish Balay           }
332a30f8f8cSSatish Balay           n_loc++;
333a30f8f8cSSatish Balay         }
334b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
335a30f8f8cSSatish Balay       }
336a30f8f8cSSatish Balay     }
337a30f8f8cSSatish Balay   }
338a30f8f8cSSatish Balay   PetscFunctionReturn(0);
339a30f8f8cSSatish Balay }
340a30f8f8cSSatish Balay 
34136bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
34236bd2089SBarry Smith {
34336bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
34436bd2089SBarry Smith   PetscErrorCode    ierr;
34536bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
34636bd2089SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
34736bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
34836bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
34936bd2089SBarry Smith   const PetscScalar *value     = v;
35036bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
35136bd2089SBarry Smith 
35236bd2089SBarry Smith   PetscFunctionBegin;
35336bd2089SBarry Smith   if (col < row) {
35436bd2089SBarry Smith     if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */
35536bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
35636bd2089SBarry Smith   }
35736bd2089SBarry Smith   rp   = aj + ai[row];
35836bd2089SBarry Smith   ap   = aa + bs2*ai[row];
35936bd2089SBarry Smith   rmax = imax[row];
36036bd2089SBarry Smith   nrow = ailen[row];
36136bd2089SBarry Smith   value = v;
36236bd2089SBarry Smith   low   = 0;
36336bd2089SBarry Smith   high  = nrow;
36436bd2089SBarry Smith 
36536bd2089SBarry Smith   while (high-low > 7) {
36636bd2089SBarry Smith     t = (low+high)/2;
36736bd2089SBarry Smith     if (rp[t] > col) high = t;
36836bd2089SBarry Smith     else             low  = t;
36936bd2089SBarry Smith   }
37036bd2089SBarry Smith   for (i=low; i<high; i++) {
37136bd2089SBarry Smith     if (rp[i] > col) break;
37236bd2089SBarry Smith     if (rp[i] == col) {
37336bd2089SBarry Smith       bap = ap +  bs2*i;
37436bd2089SBarry Smith       if (roworiented) {
37536bd2089SBarry Smith         if (is == ADD_VALUES) {
37636bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
37736bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
37836bd2089SBarry Smith               bap[jj] += *value++;
37936bd2089SBarry Smith             }
38036bd2089SBarry Smith           }
38136bd2089SBarry Smith         } else {
38236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
38336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
38436bd2089SBarry Smith               bap[jj] = *value++;
38536bd2089SBarry Smith             }
38636bd2089SBarry Smith           }
38736bd2089SBarry Smith         }
38836bd2089SBarry Smith       } else {
38936bd2089SBarry Smith         if (is == ADD_VALUES) {
39036bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39136bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39236bd2089SBarry Smith               *bap++ += *value++;
39336bd2089SBarry Smith             }
39436bd2089SBarry Smith           }
39536bd2089SBarry Smith         } else {
39636bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
39736bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
39836bd2089SBarry Smith               *bap++  = *value++;
39936bd2089SBarry Smith             }
40036bd2089SBarry Smith           }
40136bd2089SBarry Smith         }
40236bd2089SBarry Smith       }
40336bd2089SBarry Smith       goto noinsert2;
40436bd2089SBarry Smith     }
40536bd2089SBarry Smith   }
40636bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
40736bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol);
40836bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
40936bd2089SBarry Smith   N = nrow++ - 1; high++;
41036bd2089SBarry Smith   /* shift up all the later entries in this row */
411580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
412580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
41336bd2089SBarry Smith   rp[i] = col;
41436bd2089SBarry Smith   bap   = ap +  bs2*i;
41536bd2089SBarry Smith   if (roworiented) {
41636bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
41736bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
41836bd2089SBarry Smith         bap[jj] = *value++;
41936bd2089SBarry Smith       }
42036bd2089SBarry Smith     }
42136bd2089SBarry Smith   } else {
42236bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
42336bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
42436bd2089SBarry Smith         *bap++ = *value++;
42536bd2089SBarry Smith       }
42636bd2089SBarry Smith     }
42736bd2089SBarry Smith   }
42836bd2089SBarry Smith   noinsert2:;
42936bd2089SBarry Smith   ailen[row] = nrow;
43036bd2089SBarry Smith   PetscFunctionReturn(0);
43136bd2089SBarry Smith }
43236bd2089SBarry Smith 
43336bd2089SBarry Smith /*
43436bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
43536bd2089SBarry Smith */
43636bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
43736bd2089SBarry Smith {
43836bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
43936bd2089SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
44036bd2089SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
44136bd2089SBarry Smith   PetscErrorCode    ierr;
44236bd2089SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
44336bd2089SBarry Smith   PetscBool         roworiented=a->roworiented;
44436bd2089SBarry Smith   const PetscScalar *value     = v;
44536bd2089SBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
44636bd2089SBarry Smith 
44736bd2089SBarry Smith   PetscFunctionBegin;
44836bd2089SBarry Smith   rp   = aj + ai[row];
44936bd2089SBarry Smith   ap   = aa + bs2*ai[row];
45036bd2089SBarry Smith   rmax = imax[row];
45136bd2089SBarry Smith   nrow = ailen[row];
45236bd2089SBarry Smith   low  = 0;
45336bd2089SBarry Smith   high = nrow;
45436bd2089SBarry Smith   value = v;
45536bd2089SBarry Smith   while (high-low > 7) {
45636bd2089SBarry Smith     t = (low+high)/2;
45736bd2089SBarry Smith     if (rp[t] > col) high = t;
45836bd2089SBarry Smith     else             low  = t;
45936bd2089SBarry Smith   }
46036bd2089SBarry Smith   for (i=low; i<high; i++) {
46136bd2089SBarry Smith     if (rp[i] > col) break;
46236bd2089SBarry Smith     if (rp[i] == col) {
46336bd2089SBarry Smith       bap = ap +  bs2*i;
46436bd2089SBarry Smith       if (roworiented) {
46536bd2089SBarry Smith         if (is == ADD_VALUES) {
46636bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
46736bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
46836bd2089SBarry Smith               bap[jj] += *value++;
46936bd2089SBarry Smith             }
47036bd2089SBarry Smith           }
47136bd2089SBarry Smith         } else {
47236bd2089SBarry Smith           for (ii=0; ii<bs; ii++) {
47336bd2089SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
47436bd2089SBarry Smith               bap[jj] = *value++;
47536bd2089SBarry Smith             }
47636bd2089SBarry Smith           }
47736bd2089SBarry Smith         }
47836bd2089SBarry Smith       } else {
47936bd2089SBarry Smith         if (is == ADD_VALUES) {
48036bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48136bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48236bd2089SBarry Smith               bap[jj] += value[jj];
48336bd2089SBarry Smith             }
48436bd2089SBarry Smith             bap += bs;
48536bd2089SBarry Smith           }
48636bd2089SBarry Smith         } else {
48736bd2089SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
48836bd2089SBarry Smith             for (jj=0; jj<bs; jj++) {
48936bd2089SBarry Smith               bap[jj]  = value[jj];
49036bd2089SBarry Smith             }
49136bd2089SBarry Smith             bap += bs;
49236bd2089SBarry Smith           }
49336bd2089SBarry Smith         }
49436bd2089SBarry Smith       }
49536bd2089SBarry Smith       goto noinsert2;
49636bd2089SBarry Smith     }
49736bd2089SBarry Smith   }
49836bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
49936bd2089SBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
50036bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
50136bd2089SBarry Smith   N = nrow++ - 1; high++;
50236bd2089SBarry Smith   /* shift up all the later entries in this row */
503580bdb30SBarry Smith   ierr  = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
504580bdb30SBarry Smith   ierr  = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
50536bd2089SBarry Smith   rp[i] = col;
50636bd2089SBarry Smith   bap   = ap +  bs2*i;
50736bd2089SBarry Smith   if (roworiented) {
50836bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
50936bd2089SBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
51036bd2089SBarry Smith         bap[jj] = *value++;
51136bd2089SBarry Smith       }
51236bd2089SBarry Smith     }
51336bd2089SBarry Smith   } else {
51436bd2089SBarry Smith     for (ii=0; ii<bs; ii++) {
51536bd2089SBarry Smith       for (jj=0; jj<bs; jj++) {
51636bd2089SBarry Smith         *bap++ = *value++;
51736bd2089SBarry Smith       }
51836bd2089SBarry Smith     }
51936bd2089SBarry Smith   }
52036bd2089SBarry Smith   noinsert2:;
52136bd2089SBarry Smith   ailen[row] = nrow;
52236bd2089SBarry Smith   PetscFunctionReturn(0);
52336bd2089SBarry Smith }
52436bd2089SBarry Smith 
52536bd2089SBarry Smith /*
52636bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
52736bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
52836bd2089SBarry Smith */
529dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
530a30f8f8cSSatish Balay {
5310880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
532f15d580aSBarry Smith   const MatScalar *value;
533f15d580aSBarry Smith   MatScalar       *barray     =baij->barray;
534ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
535dfbe8321SBarry Smith   PetscErrorCode  ierr;
536899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
537476417e5SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
538476417e5SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
5390880e062SHong Zhang 
540a30f8f8cSSatish Balay   PetscFunctionBegin;
5410880e062SHong Zhang   if (!barray) {
542785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
5430880e062SHong Zhang     baij->barray = barray;
5440880e062SHong Zhang   }
5450880e062SHong Zhang 
5460880e062SHong Zhang   if (roworiented) {
5470880e062SHong Zhang     stepval = (n-1)*bs;
5480880e062SHong Zhang   } else {
5490880e062SHong Zhang     stepval = (m-1)*bs;
5500880e062SHong Zhang   }
5510880e062SHong Zhang   for (i=0; i<m; i++) {
5520880e062SHong Zhang     if (im[i] < 0) continue;
5532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
554bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
5550880e062SHong Zhang #endif
5560880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5570880e062SHong Zhang       row = im[i] - rstart;
5580880e062SHong Zhang       for (j=0; j<n; j++) {
559f3f98c53SJed Brown         if (im[i] > in[j]) {
560f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
561e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
562f3f98c53SJed Brown         }
5630880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5640880e062SHong Zhang         if ((roworiented) && (n == 1)) {
565f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
5660880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
567f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
5680880e062SHong Zhang         } else { /* Here a copy is required */
5690880e062SHong Zhang           if (roworiented) {
5700880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
5710880e062SHong Zhang           } else {
5720880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
5730880e062SHong Zhang           }
5740880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
5750880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
5760880e062SHong Zhang               *barray++ = *value++;
5770880e062SHong Zhang             }
5780880e062SHong Zhang           }
5790880e062SHong Zhang           barray -=bs2;
5800880e062SHong Zhang         }
5810880e062SHong Zhang 
5820880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
5830880e062SHong Zhang           col  = in[j] - cstart;
58436bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
58526fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
5862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
587bb003d0fSBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
5880880e062SHong Zhang #endif
5890880e062SHong Zhang         else {
5900880e062SHong Zhang           if (mat->was_assembled) {
5910880e062SHong Zhang             if (!baij->colmap) {
592ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
5930880e062SHong Zhang             }
5940880e062SHong Zhang 
5952515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
5960880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
5971302d50aSBarry Smith             { PetscInt data;
5980880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
599e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
6000880e062SHong Zhang             }
6010880e062SHong Zhang #else
602e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
6030880e062SHong Zhang #endif
6040880e062SHong Zhang #endif
6050880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
6060880e062SHong Zhang             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
6070880e062SHong Zhang             col  = (col - 1)/bs;
6080880e062SHong Zhang #else
6090880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
6100880e062SHong Zhang #endif
6110880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
612ab9863d7SBarry Smith               ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
6130880e062SHong Zhang               col  = in[j];
6140880e062SHong Zhang             }
61526fbe8dcSKarl Rupp           } else col = in[j];
61636bd2089SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
6170880e062SHong Zhang         }
6180880e062SHong Zhang       }
6190880e062SHong Zhang     } else {
620bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
6210880e062SHong Zhang       if (!baij->donotstash) {
6220880e062SHong Zhang         if (roworiented) {
6230880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6240880e062SHong Zhang         } else {
6250880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6260880e062SHong Zhang         }
6270880e062SHong Zhang       }
6280880e062SHong Zhang     }
6290880e062SHong Zhang   }
6300880e062SHong Zhang   PetscFunctionReturn(0);
631a30f8f8cSSatish Balay }
632a30f8f8cSSatish Balay 
6331302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
634a30f8f8cSSatish Balay {
635f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
6366849ba73SBarry Smith   PetscErrorCode ierr;
637d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
638d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
639a30f8f8cSSatish Balay 
640a30f8f8cSSatish Balay   PetscFunctionBegin;
641a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
642e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
643e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
644a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
645a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
646a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
647e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
648e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
649a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
650a30f8f8cSSatish Balay           col  = idxn[j] - bscstart;
651c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
652a30f8f8cSSatish Balay         } else {
653a30f8f8cSSatish Balay           if (!baij->colmap) {
654ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
655a30f8f8cSSatish Balay           }
656a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
657a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
658a30f8f8cSSatish Balay           data--;
659a30f8f8cSSatish Balay #else
660a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
661a30f8f8cSSatish Balay #endif
662a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
663a30f8f8cSSatish Balay           else {
664a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
665e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
666a30f8f8cSSatish Balay           }
667a30f8f8cSSatish Balay         }
668a30f8f8cSSatish Balay       }
669f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
670a30f8f8cSSatish Balay   }
671a30f8f8cSSatish Balay   PetscFunctionReturn(0);
672a30f8f8cSSatish Balay }
673a30f8f8cSSatish Balay 
674dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode ierr;
678a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
679a30f8f8cSSatish Balay 
680a30f8f8cSSatish Balay   PetscFunctionBegin;
681a30f8f8cSSatish Balay   if (baij->size == 1) {
682a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
683a30f8f8cSSatish Balay   } else {
684a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
685785e854fSJed Brown       ierr    = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr);
686a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
687a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
688a30f8f8cSSatish Balay       ierr    =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
689a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
690b2566f29SBarry Smith       ierr    = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6918f1a2a5eSBarry Smith       *norm   = PetscSqrtReal(sum[0] + 2*sum[1]);
692a30f8f8cSSatish Balay       ierr    = PetscFree(lnorm2);CHKERRQ(ierr);
6930b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
6940b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
6950b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
6960b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
697899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
698d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
6990b8dc8d2SHong Zhang       MatScalar    *v;
7000b8dc8d2SHong Zhang 
701dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr);
702580bdb30SBarry Smith       ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr);
7030b8dc8d2SHong Zhang       /* Amat */
7040b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
7050b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7060b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7070b8dc8d2SHong Zhang         nz   = amat->i[brow+1] - amat->i[brow];
7080b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7090b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
7100b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7110b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7120b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7130b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7140b8dc8d2SHong Zhang               /* non-diagonal block */
7150b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
7160b8dc8d2SHong Zhang             }
7170b8dc8d2SHong Zhang           }
7180b8dc8d2SHong Zhang         }
71951f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7200b8dc8d2SHong Zhang       }
7210b8dc8d2SHong Zhang       /* Bmat */
7220b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
7230b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
7240b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
7250b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
7260b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++) {
7270b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
7280b8dc8d2SHong Zhang           for (col=0; col<bs; col++) {
7290b8dc8d2SHong Zhang             for (row=0; row<bs; row++) {
7300b8dc8d2SHong Zhang               vabs            = PetscAbsScalar(*v); v++;
7310b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
7320b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
7330b8dc8d2SHong Zhang             }
7340b8dc8d2SHong Zhang           }
7350b8dc8d2SHong Zhang         }
73651f70360SJed Brown         ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr);
7370b8dc8d2SHong Zhang       }
738b2566f29SBarry Smith       ierr  = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7390b8dc8d2SHong Zhang       *norm = 0.0;
740d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
7410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7420b8dc8d2SHong Zhang       }
74374ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
744f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
745a30f8f8cSSatish Balay   }
746a30f8f8cSSatish Balay   PetscFunctionReturn(0);
747a30f8f8cSSatish Balay }
748a30f8f8cSSatish Balay 
749dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
750a30f8f8cSSatish Balay {
751a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
752dfbe8321SBarry Smith   PetscErrorCode ierr;
7531302d50aSBarry Smith   PetscInt       nstash,reallocs;
754a30f8f8cSSatish Balay 
755a30f8f8cSSatish Balay   PetscFunctionBegin;
75626fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
757a30f8f8cSSatish Balay 
758d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7591e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
760a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7611e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
762a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7631e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
764a30f8f8cSSatish Balay   PetscFunctionReturn(0);
765a30f8f8cSSatish Balay }
766a30f8f8cSSatish Balay 
767dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
768a30f8f8cSSatish Balay {
769a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
770a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a   =(Mat_SeqSBAIJ*)baij->A->data;
7716849ba73SBarry Smith   PetscErrorCode ierr;
77213f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
773e44c0bd4SBarry Smith   PetscInt       *row,*col;
774ace3abfcSBarry Smith   PetscBool      other_disassembled;
77513f74950SBarry Smith   PetscMPIInt    n;
776ace3abfcSBarry Smith   PetscBool      r1,r2,r3;
777a30f8f8cSSatish Balay   MatScalar      *val;
778a30f8f8cSSatish Balay 
77991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
780a30f8f8cSSatish Balay   PetscFunctionBegin;
7814cb17eb5SBarry Smith   if (!baij->donotstash &&  !mat->nooffprocentries) {
782a30f8f8cSSatish Balay     while (1) {
783a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
784a30f8f8cSSatish Balay       if (!flg) break;
785a30f8f8cSSatish Balay 
786a30f8f8cSSatish Balay       for (i=0; i<n;) {
787a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
78826fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
78926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
79026fbe8dcSKarl Rupp         }
791a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
792a30f8f8cSSatish Balay         else       ncols = n-i;
793a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
7944b4eb8d3SJed Brown         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
795a30f8f8cSSatish Balay         i    = j;
796a30f8f8cSSatish Balay       }
797a30f8f8cSSatish Balay     }
798a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
799a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
800a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
801a30f8f8cSSatish Balay        restore the original flags */
802a30f8f8cSSatish Balay     r1 = baij->roworiented;
803a30f8f8cSSatish Balay     r2 = a->roworiented;
80491c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
80526fbe8dcSKarl Rupp 
806a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
807a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
80826fbe8dcSKarl Rupp 
80991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
810a30f8f8cSSatish Balay     while (1) {
811a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
812a30f8f8cSSatish Balay       if (!flg) break;
813a30f8f8cSSatish Balay 
814a30f8f8cSSatish Balay       for (i=0; i<n;) {
815a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
81626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
81726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
81826fbe8dcSKarl Rupp         }
819a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
820a30f8f8cSSatish Balay         else       ncols = n-i;
8214b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
822a30f8f8cSSatish Balay         i    = j;
823a30f8f8cSSatish Balay       }
824a30f8f8cSSatish Balay     }
825a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
82626fbe8dcSKarl Rupp 
827a30f8f8cSSatish Balay     baij->roworiented = r1;
828a30f8f8cSSatish Balay     a->roworiented    = r2;
82926fbe8dcSKarl Rupp 
83091c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */
831a30f8f8cSSatish Balay   }
832a30f8f8cSSatish Balay 
833a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
834a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
835a30f8f8cSSatish Balay 
836a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
837a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
838a30f8f8cSSatish Balay   /*
839a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
840a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
841a30f8f8cSSatish Balay   */
842a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
843b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
844a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
845ab9863d7SBarry Smith       ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
846a30f8f8cSSatish Balay     }
847a30f8f8cSSatish Balay   }
848a30f8f8cSSatish Balay 
849a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
85040781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
851a30f8f8cSSatish Balay   }
852a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
853a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
854a30f8f8cSSatish Balay 
85574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
85626fbe8dcSKarl Rupp 
857a30f8f8cSSatish Balay   baij->rowvalues = 0;
8584f9cfa9eSBarry Smith 
8594f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8604f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
861e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
862b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
863e56f5c9eSBarry Smith   }
864a30f8f8cSSatish Balay   PetscFunctionReturn(0);
865a30f8f8cSSatish Balay }
866a30f8f8cSSatish Balay 
867dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
8689804daf3SBarry Smith #include <petscdraw.h>
8696849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
870a30f8f8cSSatish Balay {
871a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
872dfbe8321SBarry Smith   PetscErrorCode    ierr;
873d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
8747da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
875ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
876b0a32e0cSBarry Smith   PetscViewer       sviewer;
877f3ef73ceSBarry Smith   PetscViewerFormat format;
878a30f8f8cSSatish Balay 
879a30f8f8cSSatish Balay   PetscFunctionBegin;
880251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
881251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
88232077d6dSBarry Smith   if (iascii) {
883b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
884456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
885a30f8f8cSSatish Balay       MatInfo info;
886ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
887a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
8881575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
889b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
890a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
891e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
892a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
893e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
894b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8951575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
89607d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
897a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
898a30f8f8cSSatish Balay       PetscFunctionReturn(0);
899fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
90077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
901a30f8f8cSSatish Balay       PetscFunctionReturn(0);
902c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
903c1490034SHong Zhang       PetscFunctionReturn(0);
904a30f8f8cSSatish Balay     }
905a30f8f8cSSatish Balay   }
906a30f8f8cSSatish Balay 
907a30f8f8cSSatish Balay   if (isdraw) {
908b0a32e0cSBarry Smith     PetscDraw draw;
909ace3abfcSBarry Smith     PetscBool isnull;
910b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
91145f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
91245f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
913a30f8f8cSSatish Balay   }
914a30f8f8cSSatish Balay 
9157da1fb6eSBarry Smith   {
916a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
917a30f8f8cSSatish Balay     Mat          A;
91865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
91965d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
920d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
921a30f8f8cSSatish Balay     MatScalar    *a;
9223e219373SBarry Smith     const char   *matname;
923a30f8f8cSSatish Balay 
924f204ca49SKris Buschelman     /* Should this be the same type as mat? */
925ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
926a30f8f8cSSatish Balay     if (!rank) {
927f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
928a30f8f8cSSatish Balay     } else {
929f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
930a30f8f8cSSatish Balay     }
931f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
9320298fd71SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9332b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9343bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay     /* copy over the A part */
93765d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ*)baij->A->data;
938a30f8f8cSSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
939785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
940a30f8f8cSSatish Balay 
941a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
942e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
94326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
944a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
945e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
946a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
947dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
94826fbe8dcSKarl Rupp           col++;
94926fbe8dcSKarl Rupp           a += bs;
950a30f8f8cSSatish Balay         }
951a30f8f8cSSatish Balay       }
952a30f8f8cSSatish Balay     }
953a30f8f8cSSatish Balay     /* copy over the B part */
95465d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
95565d70643SHong Zhang     ai   = Bloc->i; aj = Bloc->j; a = Bloc->a;
956a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
957e9f7bc9eSHong Zhang 
958e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
95926fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
960a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
961a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
962a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
963799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
96426fbe8dcSKarl Rupp           col++;
96526fbe8dcSKarl Rupp           a += bs;
966a30f8f8cSSatish Balay         }
967a30f8f8cSSatish Balay       }
968a30f8f8cSSatish Balay     }
969a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
970a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
971a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
972a30f8f8cSSatish Balay     /*
973a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
974b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
975a30f8f8cSSatish Balay     */
9763f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
977ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
9783e219373SBarry Smith     if (!rank) {
979ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
980383922c3SLisandro Dalcin       ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
981a30f8f8cSSatish Balay     }
9823f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
9831575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9846bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
985a30f8f8cSSatish Balay   }
986a30f8f8cSSatish Balay   PetscFunctionReturn(0);
987a30f8f8cSSatish Balay }
988a30f8f8cSSatish Balay 
989d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer)
990d1654148SHong Zhang {
991d1654148SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)mat->data;
992d1654148SHong Zhang   Mat_SeqSBAIJ   *A = (Mat_SeqSBAIJ*)a->A->data;
993d1654148SHong Zhang   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
994d1654148SHong Zhang   PetscErrorCode ierr;
995d1654148SHong Zhang   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
996d1654148SHong Zhang   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
997d1654148SHong Zhang   int            fd;
998d1654148SHong Zhang   PetscScalar    *column_values;
999d1654148SHong Zhang   FILE           *file;
1000d1654148SHong Zhang   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1001d1654148SHong Zhang   PetscInt       message_count,flowcontrolcount;
1002d1654148SHong Zhang 
1003d1654148SHong Zhang   PetscFunctionBegin;
1004d1654148SHong Zhang   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1005d1654148SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1006d1654148SHong Zhang   nz   = bs2*(A->nz + B->nz);
1007d1654148SHong Zhang   rlen = mat->rmap->n;
1008d1654148SHong Zhang   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1009d1654148SHong Zhang   if (!rank) {
1010d1654148SHong Zhang     header[0] = MAT_FILE_CLASSID;
1011d1654148SHong Zhang     header[1] = mat->rmap->N;
1012d1654148SHong Zhang     header[2] = mat->cmap->N;
1013d1654148SHong Zhang 
1014d1654148SHong Zhang     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1015d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1016d1654148SHong Zhang     /* get largest number of rows any processor has */
1017d1654148SHong Zhang     range = mat->rmap->range;
1018d1654148SHong Zhang     for (i=1; i<size; i++) {
1019d1654148SHong Zhang       rlen = PetscMax(rlen,range[i+1] - range[i]);
1020d1654148SHong Zhang     }
1021d1654148SHong Zhang   } else {
1022d1654148SHong Zhang     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1023d1654148SHong Zhang   }
1024d1654148SHong Zhang 
1025d1654148SHong Zhang   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1026d1654148SHong Zhang   /* compute lengths of each row  */
1027d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1028d1654148SHong Zhang     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1029d1654148SHong Zhang   }
1030d1654148SHong Zhang   /* store the row lengths to the file */
1031d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1032d1654148SHong Zhang   if (!rank) {
1033d1654148SHong Zhang     MPI_Status status;
1034d1654148SHong Zhang     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1035d1654148SHong Zhang     rlen = (range[1] - range[0])/bs;
1036d1654148SHong Zhang     for (i=0; i<rlen; i++) {
1037d1654148SHong Zhang       for (j=0; j<bs; j++) {
1038d1654148SHong Zhang         row_lens[i*bs+j] = bs*crow_lens[i];
1039d1654148SHong Zhang       }
1040d1654148SHong Zhang     }
1041d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1042d1654148SHong Zhang     for (i=1; i<size; i++) {
1043d1654148SHong Zhang       rlen = (range[i+1] - range[i])/bs;
1044d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1045d1654148SHong Zhang       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1046d1654148SHong Zhang       for (k=0; k<rlen; k++) {
1047d1654148SHong Zhang         for (j=0; j<bs; j++) {
1048d1654148SHong Zhang           row_lens[k*bs+j] = bs*crow_lens[k];
1049d1654148SHong Zhang         }
1050d1654148SHong Zhang       }
1051d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1052d1654148SHong Zhang     }
1053d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1054d1654148SHong Zhang     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1055d1654148SHong Zhang   } else {
1056d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1057d1654148SHong Zhang     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1058d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1059d1654148SHong Zhang   }
1060d1654148SHong Zhang   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1061d1654148SHong Zhang 
1062d1654148SHong Zhang   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1063d1654148SHong Zhang      information needed to make it for each row from a block row. This does require more communication but still not more than
1064d1654148SHong Zhang      the communication needed for the nonzero values  */
1065d1654148SHong Zhang   nzmax = nz; /*  space a largest processor needs */
1066d1654148SHong Zhang   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1067d1654148SHong Zhang   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1068d1654148SHong Zhang   cnt   = 0;
1069d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1070d1654148SHong Zhang     pcnt = cnt;
1071d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1072d1654148SHong Zhang       if ((col = garray[B->j[j]]) > cstart) break;
1073d1654148SHong Zhang       for (l=0; l<bs; l++) {
1074d1654148SHong Zhang         column_indices[cnt++] = bs*col+l;
1075d1654148SHong Zhang       }
1076d1654148SHong Zhang     }
1077d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1078d1654148SHong Zhang       for (l=0; l<bs; l++) {
1079d1654148SHong Zhang         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1080d1654148SHong Zhang       }
1081d1654148SHong Zhang     }
1082d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1083d1654148SHong Zhang       for (l=0; l<bs; l++) {
1084d1654148SHong Zhang         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1085d1654148SHong Zhang       }
1086d1654148SHong Zhang     }
1087d1654148SHong Zhang     len = cnt - pcnt;
1088d1654148SHong Zhang     for (k=1; k<bs; k++) {
1089580bdb30SBarry Smith       ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr);
1090d1654148SHong Zhang       cnt += len;
1091d1654148SHong Zhang     }
1092d1654148SHong Zhang   }
1093d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1094d1654148SHong Zhang 
1095d1654148SHong Zhang   /* store the columns to the file */
1096d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1097d1654148SHong Zhang   if (!rank) {
1098d1654148SHong Zhang     MPI_Status status;
1099d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1100d1654148SHong Zhang     for (i=1; i<size; i++) {
1101d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1102d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1103d1654148SHong Zhang       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1104d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1105d1654148SHong Zhang     }
1106d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1107d1654148SHong Zhang   } else {
1108d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1109d1654148SHong Zhang     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1110d1654148SHong Zhang     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1111d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1112d1654148SHong Zhang   }
1113d1654148SHong Zhang   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1114d1654148SHong Zhang 
1115d1654148SHong Zhang   /* load up the numerical values */
1116d1654148SHong Zhang   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1117d1654148SHong Zhang   cnt  = 0;
1118d1654148SHong Zhang   for (i=0; i<a->mbs; i++) {
1119d1654148SHong Zhang     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1120d1654148SHong Zhang     for (j=B->i[i]; j<B->i[i+1]; j++) {
1121d1654148SHong Zhang       if (garray[B->j[j]] > cstart) break;
1122d1654148SHong Zhang       for (l=0; l<bs; l++) {
1123d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1124d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1125d1654148SHong Zhang         }
1126d1654148SHong Zhang       }
1127d1654148SHong Zhang       cnt += bs;
1128d1654148SHong Zhang     }
1129d1654148SHong Zhang     for (k=A->i[i]; k<A->i[i+1]; k++) {
1130d1654148SHong Zhang       for (l=0; l<bs; l++) {
1131d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1132d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1133d1654148SHong Zhang         }
1134d1654148SHong Zhang       }
1135d1654148SHong Zhang       cnt += bs;
1136d1654148SHong Zhang     }
1137d1654148SHong Zhang     for (; j<B->i[i+1]; j++) {
1138d1654148SHong Zhang       for (l=0; l<bs; l++) {
1139d1654148SHong Zhang         for (ll=0; ll<bs; ll++) {
1140d1654148SHong Zhang           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1141d1654148SHong Zhang         }
1142d1654148SHong Zhang       }
1143d1654148SHong Zhang       cnt += bs;
1144d1654148SHong Zhang     }
1145d1654148SHong Zhang     cnt += (bs-1)*rlen;
1146d1654148SHong Zhang   }
1147d1654148SHong Zhang   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1148d1654148SHong Zhang 
1149d1654148SHong Zhang   /* store the column values to the file */
1150d1654148SHong Zhang   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1151d1654148SHong Zhang   if (!rank) {
1152d1654148SHong Zhang     MPI_Status status;
1153d1654148SHong Zhang     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1154d1654148SHong Zhang     for (i=1; i<size; i++) {
1155d1654148SHong Zhang       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1156d1654148SHong Zhang       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1157d1654148SHong Zhang       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1158d1654148SHong Zhang       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1159d1654148SHong Zhang     }
1160d1654148SHong Zhang     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1161d1654148SHong Zhang   } else {
1162d1654148SHong Zhang     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1163d1654148SHong Zhang     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1164d1654148SHong Zhang     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1165d1654148SHong Zhang     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1166d1654148SHong Zhang   }
1167d1654148SHong Zhang   ierr = PetscFree(column_values);CHKERRQ(ierr);
1168d1654148SHong Zhang 
1169d1654148SHong Zhang   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1170d1654148SHong Zhang   if (file) {
1171d1654148SHong Zhang     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1172d1654148SHong Zhang   }
1173d1654148SHong Zhang   PetscFunctionReturn(0);
1174d1654148SHong Zhang }
1175d1654148SHong Zhang 
1176dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
1177a30f8f8cSSatish Balay {
1178dfbe8321SBarry Smith   PetscErrorCode ierr;
1179ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
1180a30f8f8cSSatish Balay 
1181a30f8f8cSSatish Balay   PetscFunctionBegin;
1182251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1183251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1184251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1185251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1186d1654148SHong Zhang   if (iascii || isdraw || issocket) {
1187a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1188d1654148SHong Zhang   } else if (isbinary) {
1189d1654148SHong Zhang     ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1190a30f8f8cSSatish Balay   }
1191a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1192a30f8f8cSSatish Balay }
1193a30f8f8cSSatish Balay 
1194dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
1195a30f8f8cSSatish Balay {
1196a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1197dfbe8321SBarry Smith   PetscErrorCode ierr;
1198a30f8f8cSSatish Balay 
1199a30f8f8cSSatish Balay   PetscFunctionBegin;
1200a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
1201d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
1202a30f8f8cSSatish Balay #endif
1203a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
1204a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12056bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12066bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1207a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
12086bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
1209a30f8f8cSSatish Balay #else
121005b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
1211a30f8f8cSSatish Balay #endif
121205b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12136bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12146bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
12156bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr);
12166bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr);
12176bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr);
12186bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr);
12196bf464f9SBarry Smith   ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr);
12206bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr);
12215755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
122205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
122305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12246bf464f9SBarry Smith   ierr = VecDestroy(&baij->diag);CHKERRQ(ierr);
12256bf464f9SBarry Smith   ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr);
12266bf464f9SBarry Smith   ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr);
1227ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
122805b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
1229a30f8f8cSSatish Balay #endif
123059ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
123159ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
1232899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1233bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1234901853e0SKris Buschelman 
1235dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1236bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1237bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1238bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1239d2c30c80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
12406214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
12416214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr);
12426214f412SHong Zhang #endif
1243b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr);
1244b147fbf3SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr);
1245a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1246a30f8f8cSSatish Balay }
1247a30f8f8cSSatish Balay 
1248547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
1249547795f9SHong Zhang {
1250547795f9SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1251547795f9SHong Zhang   PetscErrorCode    ierr;
1252*eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
12536de40e93SBarry Smith   PetscScalar       *from;
12546de40e93SBarry Smith   const PetscScalar *x;
1255547795f9SHong Zhang 
1256547795f9SHong Zhang   PetscFunctionBegin;
1257547795f9SHong Zhang   /* diagonal part */
1258547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1259547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1260547795f9SHong Zhang 
1261547795f9SHong Zhang   /* subdiagonal part */
1262547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1263547795f9SHong Zhang 
1264547795f9SHong Zhang   /* copy x into the vec slvec0 */
1265547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
12666de40e93SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1267547795f9SHong Zhang 
1268580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1269547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
12706de40e93SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1271547795f9SHong Zhang 
1272547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1273547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1274547795f9SHong Zhang   /* supperdiagonal part */
1275547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1276547795f9SHong Zhang   PetscFunctionReturn(0);
1277547795f9SHong Zhang }
1278547795f9SHong Zhang 
1279dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
1280a9d4b620SHong Zhang {
1281a9d4b620SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1282dfbe8321SBarry Smith   PetscErrorCode    ierr;
1283*eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1284d9ca1df4SBarry Smith   PetscScalar       *from;
1285d9ca1df4SBarry Smith   const PetscScalar *x;
1286a9d4b620SHong Zhang 
1287a9d4b620SHong Zhang   PetscFunctionBegin;
1288a9d4b620SHong Zhang   /* diagonal part */
1289a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
1290fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
1291a9d4b620SHong Zhang 
1292a9d4b620SHong Zhang   /* subdiagonal part */
1293a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1294fc165ae2SBarry Smith 
1295a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
12961ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1297d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1298a9d4b620SHong Zhang 
1299580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1300fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1301d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1302fc165ae2SBarry Smith 
1303fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1304ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1305a9d4b620SHong Zhang   /* supperdiagonal part */
1306a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1307a9d4b620SHong Zhang   PetscFunctionReturn(0);
1308a9d4b620SHong Zhang }
1309a9d4b620SHong Zhang 
1310dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1311a30f8f8cSSatish Balay {
1312a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1313dfbe8321SBarry Smith   PetscErrorCode ierr;
13141302d50aSBarry Smith   PetscInt       nt;
1315a30f8f8cSSatish Balay 
1316a30f8f8cSSatish Balay   PetscFunctionBegin;
1317a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1318e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1319e7e72b3dSBarry Smith 
1320a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1321e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
132265d70643SHong Zhang 
1323ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1324b941877fSHong Zhang   /* do diagonal part */
1325b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1326b941877fSHong Zhang   /* do supperdiagonal part */
1327ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1328b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1329b941877fSHong Zhang   /* do subdiagonal part */
1330b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1331ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1332ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1333a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1334a30f8f8cSSatish Balay }
1335a30f8f8cSSatish Balay 
1336*eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)
1337*eb1ec7c1SStefano Zampini {
1338*eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1339*eb1ec7c1SStefano Zampini   PetscErrorCode    ierr;
1340*eb1ec7c1SStefano Zampini   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1341*eb1ec7c1SStefano Zampini   PetscScalar       *from,zero=0.0;
1342*eb1ec7c1SStefano Zampini   const PetscScalar *x;
1343*eb1ec7c1SStefano Zampini 
1344*eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1345*eb1ec7c1SStefano Zampini   /* diagonal part */
1346*eb1ec7c1SStefano Zampini   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1347*eb1ec7c1SStefano Zampini   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1348*eb1ec7c1SStefano Zampini 
1349*eb1ec7c1SStefano Zampini   /* subdiagonal part */
1350*eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1351*eb1ec7c1SStefano Zampini 
1352*eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
1353*eb1ec7c1SStefano Zampini   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1354*eb1ec7c1SStefano Zampini   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1355*eb1ec7c1SStefano Zampini   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
1356*eb1ec7c1SStefano Zampini   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1357*eb1ec7c1SStefano Zampini 
1358*eb1ec7c1SStefano Zampini   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1359*eb1ec7c1SStefano Zampini   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1360*eb1ec7c1SStefano Zampini   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1361*eb1ec7c1SStefano Zampini 
1362*eb1ec7c1SStefano Zampini   /* supperdiagonal part */
1363*eb1ec7c1SStefano Zampini   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1364*eb1ec7c1SStefano Zampini   PetscFunctionReturn(0);
1365*eb1ec7c1SStefano Zampini }
1366*eb1ec7c1SStefano Zampini 
1367dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1368a30f8f8cSSatish Balay {
1369de8b6608SHong Zhang   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1370dfbe8321SBarry Smith   PetscErrorCode    ierr;
1371d0f46423SBarry Smith   PetscInt          mbs=a->mbs,bs=A->rmap->bs;
1372d9ca1df4SBarry Smith   PetscScalar       *from,zero=0.0;
1373d9ca1df4SBarry Smith   const PetscScalar *x;
1374a9d4b620SHong Zhang 
1375a9d4b620SHong Zhang   PetscFunctionBegin;
1376a9d4b620SHong Zhang   /* diagonal part */
1377a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
13782dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
1379a9d4b620SHong Zhang 
1380a9d4b620SHong Zhang   /* subdiagonal part */
1381a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1382a9d4b620SHong Zhang 
1383a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
13841ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1385d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
1386580bdb30SBarry Smith   ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
13871ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1388a9d4b620SHong Zhang 
1389ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1390d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
1391ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1392a9d4b620SHong Zhang 
1393a9d4b620SHong Zhang   /* supperdiagonal part */
1394a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1395a9d4b620SHong Zhang   PetscFunctionReturn(0);
1396a9d4b620SHong Zhang }
1397a9d4b620SHong Zhang 
1398dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1399a9d4b620SHong Zhang {
1400a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1401dfbe8321SBarry Smith   PetscErrorCode ierr;
1402a30f8f8cSSatish Balay 
1403a30f8f8cSSatish Balay   PetscFunctionBegin;
1404ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1405b941877fSHong Zhang   /* do diagonal part */
1406b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1407b941877fSHong Zhang   /* do supperdiagonal part */
1408ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1409de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1410de8b6608SHong Zhang 
1411b941877fSHong Zhang   /* do subdiagonal part */
1412a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1413ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1414ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1415a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1416a30f8f8cSSatish Balay }
1417a30f8f8cSSatish Balay 
1418a30f8f8cSSatish Balay /*
1419a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1420a30f8f8cSSatish Balay    diagonal block
1421a30f8f8cSSatish Balay */
1422dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1423a30f8f8cSSatish Balay {
1424a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1425dfbe8321SBarry Smith   PetscErrorCode ierr;
1426a30f8f8cSSatish Balay 
1427a30f8f8cSSatish Balay   PetscFunctionBegin;
1428e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1429a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1430a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1431a30f8f8cSSatish Balay }
1432a30f8f8cSSatish Balay 
1433f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1434a30f8f8cSSatish Balay {
1435a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1436dfbe8321SBarry Smith   PetscErrorCode ierr;
1437a30f8f8cSSatish Balay 
1438a30f8f8cSSatish Balay   PetscFunctionBegin;
1439f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1440f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1441a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1442a30f8f8cSSatish Balay }
1443a30f8f8cSSatish Balay 
14441302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1445a30f8f8cSSatish Balay {
1446d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1447d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1448d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1449d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1450d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1451899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1452d0d4cfc2SHong Zhang 
1453a30f8f8cSSatish Balay   PetscFunctionBegin;
1454e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1455d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1456d0d4cfc2SHong Zhang 
1457d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1458d0d4cfc2SHong Zhang     /*
1459d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1460d0d4cfc2SHong Zhang     */
1461d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1462d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1463d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1464d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1465d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
146626fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1467d0d4cfc2SHong Zhang     }
1468dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1469d0d4cfc2SHong Zhang   }
1470d0d4cfc2SHong Zhang 
1471e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1472d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1473d0d4cfc2SHong Zhang 
1474d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1475d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1476d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1477d0d4cfc2SHong Zhang   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1478d0d4cfc2SHong Zhang   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1479d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1480d0d4cfc2SHong Zhang 
1481d0d4cfc2SHong Zhang   cmap = mat->garray;
1482d0d4cfc2SHong Zhang   if (v  || idx) {
1483d0d4cfc2SHong Zhang     if (nztot) {
1484d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1485d0d4cfc2SHong Zhang       PetscInt imark = -1;
1486d0d4cfc2SHong Zhang       if (v) {
1487d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1488d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1489d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1490d0d4cfc2SHong Zhang           else break;
1491d0d4cfc2SHong Zhang         }
1492d0d4cfc2SHong Zhang         imark = i;
1493d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1494d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1495d0d4cfc2SHong Zhang       }
1496d0d4cfc2SHong Zhang       if (idx) {
1497d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1498d0d4cfc2SHong Zhang         if (imark > -1) {
1499d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1500d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1501d0d4cfc2SHong Zhang           }
1502d0d4cfc2SHong Zhang         } else {
1503d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
150426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1505d0d4cfc2SHong Zhang             else break;
1506d0d4cfc2SHong Zhang           }
1507d0d4cfc2SHong Zhang           imark = i;
1508d0d4cfc2SHong Zhang         }
1509d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1510d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1511d0d4cfc2SHong Zhang       }
1512d0d4cfc2SHong Zhang     } else {
1513d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1514d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1515d0d4cfc2SHong Zhang     }
1516d0d4cfc2SHong Zhang   }
1517d0d4cfc2SHong Zhang   *nz  = nztot;
1518d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1519d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1520a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1521a30f8f8cSSatish Balay }
1522a30f8f8cSSatish Balay 
15231302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1524a30f8f8cSSatish Balay {
1525a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1526a30f8f8cSSatish Balay 
1527a30f8f8cSSatish Balay   PetscFunctionBegin;
1528e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1529a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1530a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1531a30f8f8cSSatish Balay }
1532a30f8f8cSSatish Balay 
1533d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1534d0d4cfc2SHong Zhang {
1535d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1536d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1537d0d4cfc2SHong Zhang 
1538d0d4cfc2SHong Zhang   PetscFunctionBegin;
1539d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1540d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1541d0d4cfc2SHong Zhang }
1542d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1543d0d4cfc2SHong Zhang {
1544d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ*)A->data;
1545d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data;
1546d0d4cfc2SHong Zhang 
1547d0d4cfc2SHong Zhang   PetscFunctionBegin;
1548d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1549d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1550d0d4cfc2SHong Zhang }
1551d0d4cfc2SHong Zhang 
155299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
155399cafbc1SBarry Smith {
155499cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
155599cafbc1SBarry Smith   PetscErrorCode ierr;
155699cafbc1SBarry Smith 
155799cafbc1SBarry Smith   PetscFunctionBegin;
155899cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
155999cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
156099cafbc1SBarry Smith   PetscFunctionReturn(0);
156199cafbc1SBarry Smith }
156299cafbc1SBarry Smith 
156399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
156499cafbc1SBarry Smith {
156599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
156699cafbc1SBarry Smith   PetscErrorCode ierr;
156799cafbc1SBarry Smith 
156899cafbc1SBarry Smith   PetscFunctionBegin;
156999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
157099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
157199cafbc1SBarry Smith   PetscFunctionReturn(0);
157299cafbc1SBarry Smith }
157399cafbc1SBarry Smith 
15747dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
157536032a97SHong Zhang    Input: isrow       - distributed(parallel),
157636032a97SHong Zhang           iscol_local - locally owned (seq)
157736032a97SHong Zhang */
157836032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool  *flg)
15798f46ffcaSHong Zhang {
15808f46ffcaSHong Zhang   PetscErrorCode ierr;
15818f46ffcaSHong Zhang   PetscInt       sz1,sz2,*a1,*a2,i,j,k,nmatch;
15828f46ffcaSHong Zhang   const PetscInt *ptr1,*ptr2;
158336032a97SHong Zhang 
158436032a97SHong Zhang   PetscFunctionBegin;
15858f46ffcaSHong Zhang   ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr);
15868f46ffcaSHong Zhang   ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr);
15871098a8e8SHong Zhang   if (sz1 > sz2) {
15881098a8e8SHong Zhang     *flg = PETSC_FALSE;
15891098a8e8SHong Zhang     PetscFunctionReturn(0);
15901098a8e8SHong Zhang   }
15918f46ffcaSHong Zhang 
15928f46ffcaSHong Zhang   ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr);
15938f46ffcaSHong Zhang   ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr);
15948f46ffcaSHong Zhang 
15958f46ffcaSHong Zhang   ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr);
15968f46ffcaSHong Zhang   ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr);
1597580bdb30SBarry Smith   ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr);
1598580bdb30SBarry Smith   ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr);
15998f46ffcaSHong Zhang   ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr);
16008f46ffcaSHong Zhang   ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr);
16018f46ffcaSHong Zhang 
16028f46ffcaSHong Zhang   nmatch=0;
16038f46ffcaSHong Zhang   k     = 0;
16048f46ffcaSHong Zhang   for (i=0; i<sz1; i++){
16058f46ffcaSHong Zhang     for (j=k; j<sz2; j++){
16068f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
16078f46ffcaSHong Zhang         k = j; nmatch++;
16088f46ffcaSHong Zhang         break;
16098f46ffcaSHong Zhang       }
16108f46ffcaSHong Zhang     }
16118f46ffcaSHong Zhang   }
16128f46ffcaSHong Zhang   ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr);
16138f46ffcaSHong Zhang   ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr);
16148f46ffcaSHong Zhang   ierr = PetscFree(a1);CHKERRQ(ierr);
16158f46ffcaSHong Zhang   ierr = PetscFree(a2);CHKERRQ(ierr);
16161098a8e8SHong Zhang   if (nmatch < sz1) {
16171098a8e8SHong Zhang     *flg = PETSC_FALSE;
16181098a8e8SHong Zhang   } else {
16191098a8e8SHong Zhang     *flg = PETSC_TRUE;
16201098a8e8SHong Zhang   }
162136032a97SHong Zhang   PetscFunctionReturn(0);
16228f46ffcaSHong Zhang }
162336032a97SHong Zhang 
16247dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
162536032a97SHong Zhang {
162636032a97SHong Zhang   PetscErrorCode ierr;
162736032a97SHong Zhang   IS             iscol_local;
162836032a97SHong Zhang   PetscInt       csize;
162936032a97SHong Zhang   PetscBool      isequal;
163036032a97SHong Zhang 
163136032a97SHong Zhang   PetscFunctionBegin;
163236032a97SHong Zhang   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
163336032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
163436032a97SHong Zhang     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
163536032a97SHong Zhang     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
163636032a97SHong Zhang   } else {
163736032a97SHong Zhang     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
163836032a97SHong Zhang     ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr);
163936032a97SHong Zhang     if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow");
16408f46ffcaSHong Zhang   }
16418f46ffcaSHong Zhang 
16427dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
16437dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
16448f46ffcaSHong Zhang   if (call == MAT_INITIAL_MATRIX) {
16458f46ffcaSHong Zhang     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
16468f46ffcaSHong Zhang     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
16478f46ffcaSHong Zhang   }
16488f46ffcaSHong Zhang   PetscFunctionReturn(0);
16498f46ffcaSHong Zhang }
16508f46ffcaSHong Zhang 
1651dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1652a30f8f8cSSatish Balay {
1653a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1654dfbe8321SBarry Smith   PetscErrorCode ierr;
1655a30f8f8cSSatish Balay 
1656a30f8f8cSSatish Balay   PetscFunctionBegin;
1657a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1658a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1659a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1660a30f8f8cSSatish Balay }
1661a30f8f8cSSatish Balay 
1662dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1663a30f8f8cSSatish Balay {
1664a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1665a30f8f8cSSatish Balay   Mat            A  = a->A,B = a->B;
1666dfbe8321SBarry Smith   PetscErrorCode ierr;
16673966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
1668a30f8f8cSSatish Balay 
1669a30f8f8cSSatish Balay   PetscFunctionBegin;
1670d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
167126fbe8dcSKarl Rupp 
1672a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
167326fbe8dcSKarl Rupp 
1674a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1675a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
167626fbe8dcSKarl Rupp 
1677a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
167826fbe8dcSKarl Rupp 
1679a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1680a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1681a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1682a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1683a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1684a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1685a30f8f8cSSatish Balay     info->memory       = isend[3];
1686a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1687a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
16883966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
168926fbe8dcSKarl Rupp 
1690a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1691a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1692a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1693a30f8f8cSSatish Balay     info->memory       = irecv[3];
1694a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1695a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
16963966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
169726fbe8dcSKarl Rupp 
1698a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1699a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1700a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1701a30f8f8cSSatish Balay     info->memory       = irecv[3];
1702a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1703f23aa3ddSBarry Smith   } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1704a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1705a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1706a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1707a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1708a30f8f8cSSatish Balay }
1709a30f8f8cSSatish Balay 
1710ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)
1711a30f8f8cSSatish Balay {
1712a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a  = (Mat_MPISBAIJ*)A->data;
1713d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1714dfbe8321SBarry Smith   PetscErrorCode ierr;
1715a30f8f8cSSatish Balay 
1716a30f8f8cSSatish Balay   PetscFunctionBegin;
1717e98b92d7SKris Buschelman   switch (op) {
1718512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1719e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
172028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1721a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1722c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1723e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
172443674050SBarry Smith     MatCheckPreallocated(A,1);
17254e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17264e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1727e98b92d7SKris Buschelman     break;
1728e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
172943674050SBarry Smith     MatCheckPreallocated(A,1);
17304e0d8c25SBarry Smith     a->roworiented = flg;
173126fbe8dcSKarl Rupp 
17324e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17334e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1734e98b92d7SKris Buschelman     break;
17354e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1736071fcb05SBarry Smith   case MAT_SORTED_FULL:
1737290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1738e98b92d7SKris Buschelman     break;
1739e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
17404e0d8c25SBarry Smith     a->donotstash = flg;
1741e98b92d7SKris Buschelman     break;
1742e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
17434e0d8c25SBarry Smith     a->ht_flag = flg;
1744e98b92d7SKris Buschelman     break;
17459a4540c5SBarry Smith   case MAT_HERMITIAN:
174643674050SBarry Smith     MatCheckPreallocated(A,1);
1747eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
17480f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1749*eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1750547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1751*eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1752*eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1753*eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1754*eb1ec7c1SStefano Zampini       A->symmetric = PETSC_FALSE;
1755*eb1ec7c1SStefano Zampini     }
17560f2140c7SStefano Zampini #endif
1757eeffb40dSHong Zhang     break;
1758ffa07934SHong Zhang   case MAT_SPD:
175977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
176043674050SBarry Smith     MatCheckPreallocated(A,1);
1761eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1762*eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1763*eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1764*eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1765*eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1766*eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1767*eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1768*eb1ec7c1SStefano Zampini     }
1769*eb1ec7c1SStefano Zampini #endif
1770eeffb40dSHong Zhang     break;
177177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
177243674050SBarry Smith     MatCheckPreallocated(A,1);
1773eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1774eeffb40dSHong Zhang     break;
17759a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1776e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1777290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
177877e54ba9SKris Buschelman     break;
1779d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
17804e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1781d0d4cfc2SHong Zhang     break;
1782d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
17834e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1784d0d4cfc2SHong Zhang     break;
1785d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
17864e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1787d0d4cfc2SHong Zhang     break;
1788e98b92d7SKris Buschelman   default:
1789e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1790a30f8f8cSSatish Balay   }
1791a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1792a30f8f8cSSatish Balay }
1793a30f8f8cSSatish Balay 
1794fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1795a30f8f8cSSatish Balay {
1796dfbe8321SBarry Smith   PetscErrorCode ierr;
17976e111a19SKarl Rupp 
1798a30f8f8cSSatish Balay   PetscFunctionBegin;
1799cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
1800999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1801cf37664fSBarry Smith   }  else if (reuse == MAT_REUSE_MATRIX) {
1802cf37664fSBarry Smith     ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1803fc4dec0aSBarry Smith   }
18048115998fSBarry Smith   PetscFunctionReturn(0);
1805a30f8f8cSSatish Balay }
1806a30f8f8cSSatish Balay 
1807dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1808a30f8f8cSSatish Balay {
1809a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1810a30f8f8cSSatish Balay   Mat            a     = baij->A, b=baij->B;
1811dfbe8321SBarry Smith   PetscErrorCode ierr;
18125e90f9d9SHong Zhang   PetscInt       nv,m,n;
1813ace3abfcSBarry Smith   PetscBool      flg;
1814a30f8f8cSSatish Balay 
1815a30f8f8cSSatish Balay   PetscFunctionBegin;
1816a30f8f8cSSatish Balay   if (ll != rr) {
1817b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1818e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1819a30f8f8cSSatish Balay   }
1820b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1821b3bf805bSHong Zhang 
18225e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1823e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1824b3bf805bSHong Zhang 
18255e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1826e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
18275e90f9d9SHong Zhang 
1828ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18295e90f9d9SHong Zhang 
18305e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
18310298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
18325e90f9d9SHong Zhang 
18335e90f9d9SHong Zhang   /* scale the diagonal part */
1834a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1835a30f8f8cSSatish Balay 
18365e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1837ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18380298fd71SBarry Smith   ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
1839a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1840a30f8f8cSSatish Balay }
1841a30f8f8cSSatish Balay 
1842dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1843a30f8f8cSSatish Balay {
1844f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1845dfbe8321SBarry Smith   PetscErrorCode ierr;
1846a30f8f8cSSatish Balay 
1847a30f8f8cSSatish Balay   PetscFunctionBegin;
1848a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1849a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1850a30f8f8cSSatish Balay }
1851a30f8f8cSSatish Balay 
18526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*);
1853a30f8f8cSSatish Balay 
1854ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool  *flag)
1855a30f8f8cSSatish Balay {
1856a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1857a30f8f8cSSatish Balay   Mat            a,b,c,d;
1858ace3abfcSBarry Smith   PetscBool      flg;
1859dfbe8321SBarry Smith   PetscErrorCode ierr;
1860a30f8f8cSSatish Balay 
1861a30f8f8cSSatish Balay   PetscFunctionBegin;
1862a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1863a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1864a30f8f8cSSatish Balay 
1865a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1866abc0a331SBarry Smith   if (flg) {
1867a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1868a30f8f8cSSatish Balay   }
1869b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1870a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1871a30f8f8cSSatish Balay }
1872a30f8f8cSSatish Balay 
18733c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
18743c896bc6SHong Zhang {
18753c896bc6SHong Zhang   PetscErrorCode ierr;
18764c7a3774SStefano Zampini   PetscBool      isbaij;
18773c896bc6SHong Zhang 
18783c896bc6SHong Zhang   PetscFunctionBegin;
18794c7a3774SStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr);
18804c7a3774SStefano Zampini   if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name);
18813c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18823c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1883d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
18843c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1885d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
18863c896bc6SHong Zhang   } else {
18874c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
18884c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data;
18894c7a3774SStefano Zampini 
18903c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18913c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18923c896bc6SHong Zhang   }
1893cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18943c896bc6SHong Zhang   PetscFunctionReturn(0);
18953c896bc6SHong Zhang }
18963c896bc6SHong Zhang 
18974994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A)
1898273d9f13SBarry Smith {
1899dfbe8321SBarry Smith   PetscErrorCode ierr;
1900273d9f13SBarry Smith 
1901273d9f13SBarry Smith   PetscFunctionBegin;
1902535b19f3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1903273d9f13SBarry Smith   PetscFunctionReturn(0);
1904273d9f13SBarry Smith }
1905a5e6ed63SBarry Smith 
19064fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19074fe895cdSHong Zhang {
19084fe895cdSHong Zhang   PetscErrorCode ierr;
19094fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data;
19104fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19114fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
19124fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
19134fe895cdSHong Zhang 
19144fe895cdSHong Zhang   PetscFunctionBegin;
19154fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19164fe895cdSHong Zhang     PetscScalar alpha = a;
19174fe895cdSHong Zhang     xa   = (Mat_SeqSBAIJ*)xx->A->data;
19184fe895cdSHong Zhang     ya   = (Mat_SeqSBAIJ*)yy->A->data;
1919c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr);
19208b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one));
19214fe895cdSHong Zhang     xb   = (Mat_SeqBAIJ*)xx->B->data;
19224fe895cdSHong Zhang     yb   = (Mat_SeqBAIJ*)yy->B->data;
1923c5df96a5SBarry Smith     ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr);
19248b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one));
1925a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1926ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1927ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1928ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1929ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
19304fe895cdSHong Zhang   } else {
19314de5dceeSHong Zhang     Mat      B;
19324de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
19334de5dceeSHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1934d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
19354de5dceeSHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
19364de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
19374de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
19384de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
19394de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
19404de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
19414de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
19424de5dceeSHong Zhang     ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr);
19434de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
19444de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
19454de5dceeSHong Zhang     ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
19464de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
194728be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
19484de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
19494de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
1950d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
19514de5dceeSHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
19524fe895cdSHong Zhang   }
19534fe895cdSHong Zhang   PetscFunctionReturn(0);
19544fe895cdSHong Zhang }
19554fe895cdSHong Zhang 
19567dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1957a5e6ed63SBarry Smith {
19586849ba73SBarry Smith   PetscErrorCode ierr;
19591302d50aSBarry Smith   PetscInt       i;
1960afebec48SHong Zhang   PetscBool      flg;
1961a5e6ed63SBarry Smith 
19626849ba73SBarry Smith   PetscFunctionBegin;
19637dae84e0SHong Zhang   ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */
1964a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1965a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1966afebec48SHong Zhang     if (!flg) {
1967b2fa50c1SHong Zhang       ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr);
1968a5e6ed63SBarry Smith     }
19694dcd73b1SHong Zhang   }
1970a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1971a5e6ed63SBarry Smith }
1972a5e6ed63SBarry Smith 
19737d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a)
19747d68702bSBarry Smith {
19757d68702bSBarry Smith   PetscErrorCode ierr;
19767d68702bSBarry Smith   Mat_MPISBAIJ    *maij = (Mat_MPISBAIJ*)Y->data;
19776f33a894SBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)maij->A->data;
19787d68702bSBarry Smith 
19797d68702bSBarry Smith   PetscFunctionBegin;
19806f33a894SBarry Smith   if (!Y->preallocated) {
19817d68702bSBarry Smith     ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
19826f33a894SBarry Smith   } else if (!aij->nz) {
1983b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
19846f33a894SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
1985b83222d8SBarry Smith     aij->nonew = nonew;
19867d68702bSBarry Smith   }
19877d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
19887d68702bSBarry Smith   PetscFunctionReturn(0);
19897d68702bSBarry Smith }
19907d68702bSBarry Smith 
19913b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
19923b49f96aSBarry Smith {
19933b49f96aSBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
19943b49f96aSBarry Smith   PetscErrorCode ierr;
19953b49f96aSBarry Smith 
19963b49f96aSBarry Smith   PetscFunctionBegin;
19973b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
19983b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
19993b49f96aSBarry Smith   if (d) {
20003b49f96aSBarry Smith     PetscInt rstart;
20013b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
20023b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
20033b49f96aSBarry Smith 
20043b49f96aSBarry Smith   }
20053b49f96aSBarry Smith   PetscFunctionReturn(0);
20063b49f96aSBarry Smith }
20073b49f96aSBarry Smith 
2008a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a)
2009a5b7ff6bSBarry Smith {
2010a5b7ff6bSBarry Smith   PetscFunctionBegin;
2011a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ*)A->data)->A;
2012a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2013a5b7ff6bSBarry Smith }
20143b49f96aSBarry Smith 
2015a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
20163964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
2017a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
2018a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
2019a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
202097304618SKris Buschelman                                /*  4*/ MatMultAdd_MPISBAIJ,
2021431c96f7SBarry Smith                                        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
2022431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
2023a30f8f8cSSatish Balay                                        0,
2024a30f8f8cSSatish Balay                                        0,
2025a30f8f8cSSatish Balay                                        0,
202697304618SKris Buschelman                                /* 10*/ 0,
2027a30f8f8cSSatish Balay                                        0,
2028a30f8f8cSSatish Balay                                        0,
202941f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
2030a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
203197304618SKris Buschelman                                /* 15*/ MatGetInfo_MPISBAIJ,
2032a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
2033a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
2034a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
2035a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
203697304618SKris Buschelman                                /* 20*/ MatAssemblyBegin_MPISBAIJ,
2037a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
2038a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
2039a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
2040d519adbfSMatthew Knepley                                /* 24*/ 0,
2041a30f8f8cSSatish Balay                                        0,
2042a30f8f8cSSatish Balay                                        0,
2043a30f8f8cSSatish Balay                                        0,
2044a30f8f8cSSatish Balay                                        0,
20454994cf47SJed Brown                                /* 29*/ MatSetUp_MPISBAIJ,
2046b5df2d14SHong Zhang                                        0,
2047a30f8f8cSSatish Balay                                        0,
2048a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
2049a30f8f8cSSatish Balay                                        0,
2050d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_MPISBAIJ,
2051a30f8f8cSSatish Balay                                        0,
2052a30f8f8cSSatish Balay                                        0,
2053a30f8f8cSSatish Balay                                        0,
2054a30f8f8cSSatish Balay                                        0,
2055d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_MPISBAIJ,
20567dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
2057d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
2058a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
20593c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
2060d519adbfSMatthew Knepley                                /* 44*/ 0,
2061a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
20627d68702bSBarry Smith                                        MatShift_MPISBAIJ,
2063a30f8f8cSSatish Balay                                        0,
2064a30f8f8cSSatish Balay                                        0,
2065f73d5cc4SBarry Smith                                /* 49*/ 0,
2066a30f8f8cSSatish Balay                                        0,
2067a30f8f8cSSatish Balay                                        0,
2068a30f8f8cSSatish Balay                                        0,
2069a30f8f8cSSatish Balay                                        0,
2070d519adbfSMatthew Knepley                                /* 54*/ 0,
2071a30f8f8cSSatish Balay                                        0,
2072a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
2073a30f8f8cSSatish Balay                                        0,
2074a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
20757dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_MPISBAIJ,
2076a30f8f8cSSatish Balay                                        0,
2077a30f8f8cSSatish Balay                                        0,
2078357abbc8SBarry Smith                                        0,
207924d5174aSHong Zhang                                        0,
2080d519adbfSMatthew Knepley                                /* 64*/ 0,
208124d5174aSHong Zhang                                        0,
208224d5174aSHong Zhang                                        0,
208324d5174aSHong Zhang                                        0,
208424d5174aSHong Zhang                                        0,
2085d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
208624d5174aSHong Zhang                                        0,
208728d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
208897304618SKris Buschelman                                        0,
208997304618SKris Buschelman                                        0,
2090d519adbfSMatthew Knepley                                /* 74*/ 0,
209197304618SKris Buschelman                                        0,
209297304618SKris Buschelman                                        0,
209397304618SKris Buschelman                                        0,
209497304618SKris Buschelman                                        0,
2095d519adbfSMatthew Knepley                                /* 79*/ 0,
209697304618SKris Buschelman                                        0,
209797304618SKris Buschelman                                        0,
209897304618SKris Buschelman                                        0,
20995bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
2100d519adbfSMatthew Knepley                                /* 84*/ 0,
2101865e5f61SKris Buschelman                                        0,
2102865e5f61SKris Buschelman                                        0,
2103865e5f61SKris Buschelman                                        0,
2104865e5f61SKris Buschelman                                        0,
2105d519adbfSMatthew Knepley                                /* 89*/ 0,
2106865e5f61SKris Buschelman                                        0,
2107865e5f61SKris Buschelman                                        0,
2108865e5f61SKris Buschelman                                        0,
2109865e5f61SKris Buschelman                                        0,
2110d519adbfSMatthew Knepley                                /* 94*/ 0,
2111865e5f61SKris Buschelman                                        0,
2112865e5f61SKris Buschelman                                        0,
211399cafbc1SBarry Smith                                        0,
211499cafbc1SBarry Smith                                        0,
2115d519adbfSMatthew Knepley                                /* 99*/ 0,
211699cafbc1SBarry Smith                                        0,
211799cafbc1SBarry Smith                                        0,
211899cafbc1SBarry Smith                                        0,
211999cafbc1SBarry Smith                                        0,
2120d519adbfSMatthew Knepley                                /*104*/ 0,
212199cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
2122d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
2123d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
212495936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
212595936485SShri Abhyankar                                /*109*/ 0,
212695936485SShri Abhyankar                                        0,
212795936485SShri Abhyankar                                        0,
212895936485SShri Abhyankar                                        0,
21293b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
213095936485SShri Abhyankar                                /*114*/ 0,
213195936485SShri Abhyankar                                        0,
213295936485SShri Abhyankar                                        0,
213395936485SShri Abhyankar                                        0,
213495936485SShri Abhyankar                                        0,
213595936485SShri Abhyankar                                /*119*/ 0,
213695936485SShri Abhyankar                                        0,
213795936485SShri Abhyankar                                        0,
21383964eb88SJed Brown                                        0,
21393964eb88SJed Brown                                        0,
21403964eb88SJed Brown                                /*124*/ 0,
21413964eb88SJed Brown                                        0,
21423964eb88SJed Brown                                        0,
21433964eb88SJed Brown                                        0,
21443964eb88SJed Brown                                        0,
21453964eb88SJed Brown                                /*129*/ 0,
21463964eb88SJed Brown                                        0,
21473964eb88SJed Brown                                        0,
21483964eb88SJed Brown                                        0,
21493964eb88SJed Brown                                        0,
21503964eb88SJed Brown                                /*134*/ 0,
21513964eb88SJed Brown                                        0,
21523964eb88SJed Brown                                        0,
21533964eb88SJed Brown                                        0,
21543964eb88SJed Brown                                        0,
215546533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2156f9426fe0SMark Adams                                        0,
215759f5e6ceSHong Zhang                                        0,
215859f5e6ceSHong Zhang                                        0,
215959f5e6ceSHong Zhang                                        0,
216059f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ
216199cafbc1SBarry Smith };
2162a30f8f8cSSatish Balay 
2163b2573a8aSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2164a23d5eceSKris Buschelman {
2165476417e5SBarry Smith   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)B->data;
2166dfbe8321SBarry Smith   PetscErrorCode ierr;
2167535b19f3SBarry Smith   PetscInt       i,mbs,Mbs;
21685d2a9ed1SStefano Zampini   PetscMPIInt    size;
2169a23d5eceSKris Buschelman 
2170a23d5eceSKris Buschelman   PetscFunctionBegin;
217133d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
217226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
217326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2174e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2175476417e5SBarry Smith   if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N);
2176476417e5SBarry Smith   if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n);
2177899cda47SBarry Smith 
2178d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2179d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
2180c2fc9fa9SBarry Smith   if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
2181a23d5eceSKris Buschelman 
2182d0f46423SBarry Smith   B->rmap->bs = bs;
2183a23d5eceSKris Buschelman   b->bs2      = bs*bs;
2184a23d5eceSKris Buschelman   b->mbs      = mbs;
2185a23d5eceSKris Buschelman   b->Mbs      = Mbs;
2186de64b629SHong Zhang   b->nbs      = B->cmap->n/bs;
2187de64b629SHong Zhang   b->Nbs      = B->cmap->N/bs;
2188a23d5eceSKris Buschelman 
2189a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2190d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2191a23d5eceSKris Buschelman   }
2192d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2193d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2194a23d5eceSKris Buschelman 
2195d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2196d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2197a23d5eceSKris Buschelman 
2198cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2199cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2200cb7b82ddSBarry Smith #else
2201cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2202cb7b82ddSBarry Smith #endif
2203cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2204cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2205cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2206cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr);
2207cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr);
2208cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr);
2209cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr);
2210cb7b82ddSBarry Smith   ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr);
2211cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr);
2212cb7b82ddSBarry Smith 
2213cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
22145d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2215cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2216cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
22175d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2218cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2219cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2220cb7b82ddSBarry Smith 
2221526dfc15SBarry Smith   if (!B->preallocated) {
2222f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2223d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
22249c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
22253bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2226ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2227526dfc15SBarry Smith   }
2228a23d5eceSKris Buschelman 
2229526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2230526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
223126fbe8dcSKarl Rupp 
2232526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2233cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2234cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2235a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2236a23d5eceSKris Buschelman }
2237a23d5eceSKris Buschelman 
2238dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2239dfb205c3SBarry Smith {
224002106b30SBarry Smith   PetscInt       m,rstart,cend;
22410cd7f59aSBarry Smith   PetscInt       i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0;
2242dfb205c3SBarry Smith   const PetscInt *JJ    =0;
2243dfb205c3SBarry Smith   PetscScalar    *values=0;
2244bb80cfbbSStefano Zampini   PetscBool      roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented;
2245dfb205c3SBarry Smith   PetscErrorCode ierr;
22463bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2247dfb205c3SBarry Smith 
2248dfb205c3SBarry Smith   PetscFunctionBegin;
2249ce94432eSBarry Smith   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2250dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
2251dfb205c3SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2252dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
2253dfb205c3SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2254e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2255dfb205c3SBarry Smith   m      = B->rmap->n/bs;
2256dfb205c3SBarry Smith   rstart = B->rmap->rstart/bs;
2257dfb205c3SBarry Smith   cend   = B->cmap->rend/bs;
2258dfb205c3SBarry Smith 
2259dfb205c3SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2260dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2261dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2262dfb205c3SBarry Smith     nz = ii[i+1] - ii[i];
2263dfb205c3SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
22640cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2265dfb205c3SBarry Smith     JJ     = jj + ii[i];
22660cd7f59aSBarry Smith     bd     = 0;
2267dfb205c3SBarry Smith     for (j=0; j<nz; j++) {
22680cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2269dfb205c3SBarry Smith       JJ++;
22700cd7f59aSBarry Smith       bd++;
2271dfb205c3SBarry Smith     }
2272dfb205c3SBarry Smith     d  = 0;
2273dfb205c3SBarry Smith     for (; j<nz; j++) {
2274dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2275dfb205c3SBarry Smith       d++;
2276dfb205c3SBarry Smith     }
2277dfb205c3SBarry Smith     d_nnz[i] = d;
22780cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
22790cd7f59aSBarry Smith     nz       = nz - bd;
22800cd7f59aSBarry Smith     nz_max = PetscMax(nz_max,nz);
2281dfb205c3SBarry Smith   }
2282dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2283bb80cfbbSStefano Zampini   ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
2284dfb205c3SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2285dfb205c3SBarry Smith 
2286dfb205c3SBarry Smith   values = (PetscScalar*)V;
2287dfb205c3SBarry Smith   if (!values) {
2288580bdb30SBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2289dfb205c3SBarry Smith   }
2290dfb205c3SBarry Smith   for (i=0; i<m; i++) {
2291dfb205c3SBarry Smith     PetscInt          row    = i + rstart;
2292dfb205c3SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2293dfb205c3SBarry Smith     const PetscInt    *icols = jj + ii[i];
2294bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2295dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2296dfb205c3SBarry Smith       ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2297bb80cfbbSStefano Zampini     } else {                    /* block ordering does not match so we can only insert one block at a time. */
2298bb80cfbbSStefano Zampini       PetscInt j;
22990cd7f59aSBarry Smith       for (j=0; j<ncols; j++) {
23000cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
23010cd7f59aSBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
23020cd7f59aSBarry Smith       }
23030cd7f59aSBarry Smith     }
2304dfb205c3SBarry Smith   }
2305dfb205c3SBarry Smith 
2306dfb205c3SBarry Smith   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
23073bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
23083bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2309dfb205c3SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2310dfb205c3SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
23113bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
23123bd0feecSPierre Jolivet 
23137827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2314dfb205c3SBarry Smith   PetscFunctionReturn(0);
2315dfb205c3SBarry Smith }
2316dfb205c3SBarry Smith 
23170bad9183SKris Buschelman /*MC
2318fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2319828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2320828413b8SBarry Smith    the matrix is stored.
2321828413b8SBarry Smith 
2322828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
2323828413b8SBarry Smith    can call MatSetOption(Mat, MAT_HERMITIAN);
23240bad9183SKris Buschelman 
23250bad9183SKris Buschelman    Options Database Keys:
23260bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
23270bad9183SKris Buschelman 
2328476417e5SBarry Smith    Notes:
2329476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2330476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2331476417e5SBarry Smith 
23320bad9183SKris Buschelman    Level: beginner
23330bad9183SKris Buschelman 
2334476417e5SBarry Smith .seealso: MatCreateMPISBAIJ(), MATSEQSBAIJ, MatType
23350bad9183SKris Buschelman M*/
23360bad9183SKris Buschelman 
23378cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2338b5df2d14SHong Zhang {
2339b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
2340dfbe8321SBarry Smith   PetscErrorCode ierr;
234194ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2342b5df2d14SHong Zhang 
2343b5df2d14SHong Zhang   PetscFunctionBegin;
2344b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2345b0a32e0cSBarry Smith   B->data = (void*)b;
2346b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2347b5df2d14SHong Zhang 
2348b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2349b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2350b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2351b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
235226fbe8dcSKarl Rupp 
2353ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2354ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2355b5df2d14SHong Zhang 
2356b5df2d14SHong Zhang   /* build local table of row and column ownerships */
2357854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr);
2358b5df2d14SHong Zhang 
2359b5df2d14SHong Zhang   /* build cache for off array entries formed */
2360ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
236126fbe8dcSKarl Rupp 
2362b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
23630298fd71SBarry Smith   b->colmap      = NULL;
23640298fd71SBarry Smith   b->garray      = NULL;
2365b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2366b5df2d14SHong Zhang 
2367b5df2d14SHong Zhang   /* stuff used in block assembly */
2368b5df2d14SHong Zhang   b->barray = 0;
2369b5df2d14SHong Zhang 
2370b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2371b5df2d14SHong Zhang   b->lvec    = 0;
2372b5df2d14SHong Zhang   b->Mvctx   = 0;
237340781036SHong Zhang   b->slvec0  = 0;
237440781036SHong Zhang   b->slvec0b = 0;
237540781036SHong Zhang   b->slvec1  = 0;
237640781036SHong Zhang   b->slvec1a = 0;
237740781036SHong Zhang   b->slvec1b = 0;
237840781036SHong Zhang   b->sMvctx  = 0;
2379b5df2d14SHong Zhang 
2380b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2381b5df2d14SHong Zhang   b->rowindices   = 0;
2382b5df2d14SHong Zhang   b->rowvalues    = 0;
2383b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2384b5df2d14SHong Zhang 
2385b5df2d14SHong Zhang   /* hash table stuff */
2386b5df2d14SHong Zhang   b->ht           = 0;
2387b5df2d14SHong Zhang   b->hd           = 0;
2388b5df2d14SHong Zhang   b->ht_size      = 0;
2389b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2390b5df2d14SHong Zhang   b->ht_fact      = 0;
2391b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2392b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2393b5df2d14SHong Zhang 
23947dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
23957a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
23967a868f3eSHong Zhang 
239759ffdab8SBarry Smith   b->in_loc = 0;
239859ffdab8SBarry Smith   b->v_loc  = 0;
239959ffdab8SBarry Smith   b->n_loc  = 0;
240094ae4db5SBarry Smith 
2401bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
2402bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
2403bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
2404bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr);
24056214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
24066214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr);
24076214f412SHong Zhang #endif
240828d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
240928d58a37SPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr);
2410aa5a9175SDahai Guo 
241123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
241223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
241323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
241423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
24159899f194SHong Zhang   B->symmetric_eternal          = PETSC_TRUE;
2416*eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
241713647f61SHong Zhang   B->hermitian                  = PETSC_FALSE;
241813647f61SHong Zhang   B->hermitian_set              = PETSC_FALSE;
2419*eb1ec7c1SStefano Zampini #else
2420*eb1ec7c1SStefano Zampini   B->hermitian                  = PETSC_TRUE;
2421*eb1ec7c1SStefano Zampini   B->hermitian_set              = PETSC_TRUE;
2422*eb1ec7c1SStefano Zampini #endif
242313647f61SHong Zhang 
242417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
242594ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
242694ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
242794ae4db5SBarry Smith   if (flg) {
242894ae4db5SBarry Smith     PetscReal fact = 1.39;
242994ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
243094ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
243194ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
243294ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
243394ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
243494ae4db5SBarry Smith   }
243594ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2436b5df2d14SHong Zhang   PetscFunctionReturn(0);
2437b5df2d14SHong Zhang }
2438b5df2d14SHong Zhang 
2439209238afSKris Buschelman /*MC
2440002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2441209238afSKris Buschelman 
2442209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
2443209238afSKris Buschelman    and MATMPISBAIJ otherwise.
2444209238afSKris Buschelman 
2445209238afSKris Buschelman    Options Database Keys:
2446209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
2447209238afSKris Buschelman 
2448209238afSKris Buschelman   Level: beginner
2449209238afSKris Buschelman 
2450209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
2451209238afSKris Buschelman M*/
2452209238afSKris Buschelman 
2453b5df2d14SHong Zhang /*@C
2454b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
2455b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
2456b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2457b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
2458b5df2d14SHong Zhang 
2459b5df2d14SHong Zhang    Collective on Mat
2460b5df2d14SHong Zhang 
2461b5df2d14SHong Zhang    Input Parameters:
24621c4f3114SJed Brown +  B - the matrix
2463bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2464bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2465b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2466b5df2d14SHong Zhang            submatrix  (same for all local rows)
2467b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
24686d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
24690298fd71SBarry Smith            (possibly different for each block row) or NULL.  If you plan to factor the matrix you must leave room
247095742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2471b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2472b5df2d14SHong Zhang            submatrix (same for all local rows).
2473b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
2474c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
24750298fd71SBarry Smith            (possibly different for each block row) or NULL.
2476b5df2d14SHong Zhang 
2477b5df2d14SHong Zhang 
2478b5df2d14SHong Zhang    Options Database Keys:
2479a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2480b5df2d14SHong Zhang                      block calculations (much slower)
2481a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
2482b5df2d14SHong Zhang 
2483b5df2d14SHong Zhang    Notes:
2484b5df2d14SHong Zhang 
2485b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2486b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
2487b5df2d14SHong Zhang 
248849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
248949a6f317SBarry Smith 
2490b5df2d14SHong Zhang    Storage Information:
2491b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
2492b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
2493b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
2494b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
2495b5df2d14SHong Zhang 
2496b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
2497b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
24980298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2499b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
2500b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2501b5df2d14SHong Zhang 
2502aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2503aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2504aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2505aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2506aa95bbe8SBarry Smith 
2507b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2508b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
2509b5df2d14SHong Zhang 
2510b5df2d14SHong Zhang .vb
2511b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2512a4b1a0f6SJed Brown           --------------------------
2513c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2514c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2515c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2516a4b1a0f6SJed Brown           --------------------------
2517b5df2d14SHong Zhang .ve
2518b5df2d14SHong Zhang 
2519b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
2520b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
25216d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
25226d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2523b5df2d14SHong Zhang 
25246d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
25256d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2526c2fc9fa9SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix
2527c2fc9fa9SBarry Smith 
2528b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
2529b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2530b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
2531b5df2d14SHong Zhang    matrices.
2532b5df2d14SHong Zhang 
2533b5df2d14SHong Zhang    Level: intermediate
2534b5df2d14SHong Zhang 
2535ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership()
2536b5df2d14SHong Zhang @*/
25377087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2538b5df2d14SHong Zhang {
25394ac538c5SBarry Smith   PetscErrorCode ierr;
2540b5df2d14SHong Zhang 
2541b5df2d14SHong Zhang   PetscFunctionBegin;
25426ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
25436ba663aaSJed Brown   PetscValidType(B,1);
25446ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
25454ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
2546b5df2d14SHong Zhang   PetscFunctionReturn(0);
2547b5df2d14SHong Zhang }
2548b5df2d14SHong Zhang 
2549a30f8f8cSSatish Balay /*@C
255069b1f4b7SBarry Smith    MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
2551a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
2552a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
2553a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2554a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
2555a30f8f8cSSatish Balay 
2556d083f849SBarry Smith    Collective
2557a30f8f8cSSatish Balay 
2558a30f8f8cSSatish Balay    Input Parameters:
2559a30f8f8cSSatish Balay +  comm - MPI communicator
2560bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2561bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2562a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2563a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2564a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
2565a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2566a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2567a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
2568a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2569a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2570a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2571a30f8f8cSSatish Balay            submatrix  (same for all local rows)
2572a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
25736d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
25740298fd71SBarry Smith            (possibly different for each block block row) or NULL.
257595742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
257695742e49SBarry Smith            set its value even if it is zero.
2577a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2578a30f8f8cSSatish Balay            submatrix (same for all local rows).
2579a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
2580a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
25810298fd71SBarry Smith            each block row) or NULL.
2582a30f8f8cSSatish Balay 
2583a30f8f8cSSatish Balay    Output Parameter:
2584a30f8f8cSSatish Balay .  A - the matrix
2585a30f8f8cSSatish Balay 
2586a30f8f8cSSatish Balay    Options Database Keys:
2587a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
2588a30f8f8cSSatish Balay                      block calculations (much slower)
2589a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
2590a2b725a8SWilliam Gropp -   -mat_mpi - use the parallel matrix data structures even on one processor
2591a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2592a30f8f8cSSatish Balay 
2593175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2594f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
2595175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2596175b88e8SBarry Smith 
2597a30f8f8cSSatish Balay    Notes:
2598d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
25996d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2600d1be2dadSMatthew Knepley 
2601a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
2602a30f8f8cSSatish Balay    (possibly both).
2603a30f8f8cSSatish Balay 
2604a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2605a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
2606a30f8f8cSSatish Balay 
260749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
260849a6f317SBarry Smith 
2609a30f8f8cSSatish Balay    Storage Information:
2610a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
2611a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
2612a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
2613a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
2614a30f8f8cSSatish Balay 
2615a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
2616a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
26170298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2618a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
2619a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2620a30f8f8cSSatish Balay 
2621a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2622a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
2623a30f8f8cSSatish Balay 
2624a30f8f8cSSatish Balay .vb
2625a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2626a4b1a0f6SJed Brown           --------------------------
2627c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2628c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2629c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2630a4b1a0f6SJed Brown           --------------------------
2631a30f8f8cSSatish Balay .ve
2632a30f8f8cSSatish Balay 
2633a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2634a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
26356d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
26366d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2637a30f8f8cSSatish Balay 
26386d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
26396d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2640a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2641a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2642a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2643a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2644a30f8f8cSSatish Balay    matrices.
2645a30f8f8cSSatish Balay 
2646a30f8f8cSSatish Balay    Level: intermediate
2647a30f8f8cSSatish Balay 
264869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ()
2649a30f8f8cSSatish Balay @*/
2650a30f8f8cSSatish Balay 
265169b1f4b7SBarry Smith PetscErrorCode  MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2652a30f8f8cSSatish Balay {
26536849ba73SBarry Smith   PetscErrorCode ierr;
26541302d50aSBarry Smith   PetscMPIInt    size;
2655a30f8f8cSSatish Balay 
2656a30f8f8cSSatish Balay   PetscFunctionBegin;
2657f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2658f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2659273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2660273d9f13SBarry Smith   if (size > 1) {
2661b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2662b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2663273d9f13SBarry Smith   } else {
2664273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2665273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2666273d9f13SBarry Smith   }
2667a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2668a30f8f8cSSatish Balay }
2669a30f8f8cSSatish Balay 
2670a30f8f8cSSatish Balay 
26716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2672a30f8f8cSSatish Balay {
2673a30f8f8cSSatish Balay   Mat            mat;
2674a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2675dfbe8321SBarry Smith   PetscErrorCode ierr;
2676d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2677387bc808SHong Zhang   PetscScalar    *array;
2678a30f8f8cSSatish Balay 
2679a30f8f8cSSatish Balay   PetscFunctionBegin;
2680a30f8f8cSSatish Balay   *newmat = 0;
268126fbe8dcSKarl Rupp 
2682ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
2683d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
26847adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
26851e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
26861e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2687e1b6402fSHong Zhang 
2688d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2689273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
269082327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
26917fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26927fff6886SHong Zhang 
2693b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ*)mat->data;
2694a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2695a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2696a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2697a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2698a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2699a30f8f8cSSatish Balay 
2700a30f8f8cSSatish Balay   a->size         = oldmat->size;
2701a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2702a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2703a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2704a30f8f8cSSatish Balay   a->rowindices   = 0;
2705a30f8f8cSSatish Balay   a->rowvalues    = 0;
2706a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2707a30f8f8cSSatish Balay   a->barray       = 0;
2708899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2709899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2710899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2711899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2712a30f8f8cSSatish Balay 
2713a30f8f8cSSatish Balay   /* hash table stuff */
2714a30f8f8cSSatish Balay   a->ht           = 0;
2715a30f8f8cSSatish Balay   a->hd           = 0;
2716a30f8f8cSSatish Balay   a->ht_size      = 0;
2717a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2718a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2719a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2720a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2721a30f8f8cSSatish Balay 
2722580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr);
2723a30f8f8cSSatish Balay   if (oldmat->colmap) {
2724a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2725a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2726a30f8f8cSSatish Balay #else
2727854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
27283bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2729580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
2730a30f8f8cSSatish Balay #endif
2731a30f8f8cSSatish Balay   } else a->colmap = 0;
2732387bc808SHong Zhang 
2733a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2734785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
27353bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2736580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
2737a30f8f8cSSatish Balay   } else a->garray = 0;
2738a30f8f8cSSatish Balay 
2739ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2740a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
27413bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
2742a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
27433bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
274482327fa8SHong Zhang 
274582327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
27463bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
274782327fa8SHong Zhang   ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
27483bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
2749387bc808SHong Zhang 
2750387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
27511ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2752778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2753778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
27541ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
27551ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2756778a2246SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
27571ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
27583bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr);
27593bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr);
27603bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr);
27613bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr);
27623bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr);
2763387bc808SHong Zhang 
2764387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2765387bc808SHong Zhang   ierr      = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2766387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
27673bb1ff40SBarry Smith   ierr      = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr);
276882327fa8SHong Zhang 
2769a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
27703bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2771a30f8f8cSSatish Balay   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
27723bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
2773140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2774a30f8f8cSSatish Balay   *newmat = mat;
2775a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2776a30f8f8cSSatish Balay }
2777a30f8f8cSSatish Balay 
2778112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer)
277995936485SShri Abhyankar {
278095936485SShri Abhyankar   PetscErrorCode ierr;
278195936485SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
278295936485SShri Abhyankar   PetscScalar    *vals,*buf;
2783ce94432eSBarry Smith   MPI_Comm       comm;
278495936485SShri Abhyankar   MPI_Status     status;
2785adcec1e5SJed Brown   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs;
2786adcec1e5SJed Brown   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens;
278795936485SShri Abhyankar   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
27883059b6faSBarry Smith   PetscInt       bs = newmat->rmap->bs,Mbs,mbs,extra_rows;
278995936485SShri Abhyankar   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2790461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
279195936485SShri Abhyankar   int            fd;
27927f489da9SVaclav Hapla   PetscBool      isbinary;
279395936485SShri Abhyankar 
279495936485SShri Abhyankar   PetscFunctionBegin;
27957f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
27967f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
27977f489da9SVaclav Hapla 
2798c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2799c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2800ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
28010298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
28020298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
280395936485SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
28043059b6faSBarry Smith   if (bs < 0) bs = 1;
280595936485SShri Abhyankar 
280695936485SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
280795936485SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
280895936485SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
28095872f025SBarry Smith   if (!rank) {
28109860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr);
281195936485SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
281202f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
281395936485SShri Abhyankar   }
281495936485SShri Abhyankar 
281595936485SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
281626fbe8dcSKarl Rupp   M    = header[1];
281726fbe8dcSKarl Rupp   N    = header[2];
281895936485SShri Abhyankar 
281995936485SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
2820461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
2821461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
282295936485SShri Abhyankar 
282395936485SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
282495936485SShri Abhyankar 
282595936485SShri Abhyankar   /*
282695936485SShri Abhyankar      This code adds extra rows to make sure the number of rows is
282795936485SShri Abhyankar      divisible by the blocksize
282895936485SShri Abhyankar   */
282995936485SShri Abhyankar   Mbs        = M/bs;
283095936485SShri Abhyankar   extra_rows = bs - M + bs*(Mbs);
283195936485SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
283295936485SShri Abhyankar   else                  Mbs++;
283395936485SShri Abhyankar   if (extra_rows &&!rank) {
283495936485SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
283595936485SShri Abhyankar   }
283695936485SShri Abhyankar 
283795936485SShri Abhyankar   /* determine ownership of all rows */
283895936485SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
283995936485SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
284095936485SShri Abhyankar     m   = mbs*bs;
284195936485SShri Abhyankar   } else { /* User Set */
284295936485SShri Abhyankar     m   = newmat->rmap->n;
284395936485SShri Abhyankar     mbs = m/bs;
284495936485SShri Abhyankar   }
2845dcca6d9dSJed Brown   ierr       = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
28464dc2109aSBarry Smith   ierr       = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr);
284795936485SShri Abhyankar   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
284895936485SShri Abhyankar   rowners[0] = 0;
284995936485SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
285095936485SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
285195936485SShri Abhyankar   rstart = rowners[rank];
285295936485SShri Abhyankar   rend   = rowners[rank+1];
285395936485SShri Abhyankar 
285495936485SShri Abhyankar   /* distribute row lengths to all processors */
2855785e854fSJed Brown   ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr);
285695936485SShri Abhyankar   if (!rank) {
2857854ce69bSBarry Smith     ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
28589860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr);
285995936485SShri Abhyankar     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2860785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
286195936485SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
286295936485SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
286395936485SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
286495936485SShri Abhyankar   } else {
286595936485SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
286695936485SShri Abhyankar   }
286795936485SShri Abhyankar 
286895936485SShri Abhyankar   if (!rank) {   /* procs[0] */
286995936485SShri Abhyankar     /* calculate the number of nonzeros on each processor */
2870580bdb30SBarry Smith     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
287195936485SShri Abhyankar     for (i=0; i<size; i++) {
287295936485SShri Abhyankar       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
287395936485SShri Abhyankar         procsnz[i] += rowlengths[j];
287495936485SShri Abhyankar       }
287595936485SShri Abhyankar     }
287695936485SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
287795936485SShri Abhyankar 
287895936485SShri Abhyankar     /* determine max buffer needed and allocate it */
287995936485SShri Abhyankar     maxnz = 0;
288095936485SShri Abhyankar     for (i=0; i<size; i++) {
288195936485SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
288295936485SShri Abhyankar     }
2883785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
288495936485SShri Abhyankar 
288595936485SShri Abhyankar     /* read in my part of the matrix column indices  */
288695936485SShri Abhyankar     nz     = procsnz[0];
2887785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
288895936485SShri Abhyankar     mycols = ibuf;
288995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
28909860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
289126fbe8dcSKarl Rupp     if (size == 1) {
289226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
289326fbe8dcSKarl Rupp     }
289495936485SShri Abhyankar 
289595936485SShri Abhyankar     /* read in every ones (except the last) and ship off */
289695936485SShri Abhyankar     for (i=1; i<size-1; i++) {
289795936485SShri Abhyankar       nz   = procsnz[i];
28989860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
289995936485SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
290095936485SShri Abhyankar     }
290195936485SShri Abhyankar     /* read in the stuff for the last proc */
290295936485SShri Abhyankar     if (size != 1) {
290395936485SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
29049860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr);
290595936485SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
290695936485SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
290795936485SShri Abhyankar     }
290895936485SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
290995936485SShri Abhyankar   } else {  /* procs[i], i>0 */
291095936485SShri Abhyankar     /* determine buffer space needed for message */
291195936485SShri Abhyankar     nz = 0;
291226fbe8dcSKarl Rupp     for (i=0; i<m; i++) nz += locrowlens[i];
2913785e854fSJed Brown     ierr   = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr);
291495936485SShri Abhyankar     mycols = ibuf;
291595936485SShri Abhyankar     /* receive message of column indices*/
291695936485SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
291795936485SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
291895936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
291995936485SShri Abhyankar   }
292095936485SShri Abhyankar 
292195936485SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
2922dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
2923580bdb30SBarry Smith   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
292495936485SShri Abhyankar   rowcount = 0;
292595936485SShri Abhyankar   nzcount  = 0;
292695936485SShri Abhyankar   for (i=0; i<mbs; i++) {
292795936485SShri Abhyankar     dcount  = 0;
292895936485SShri Abhyankar     odcount = 0;
292995936485SShri Abhyankar     for (j=0; j<bs; j++) {
293095936485SShri Abhyankar       kmax = locrowlens[rowcount];
293195936485SShri Abhyankar       for (k=0; k<kmax; k++) {
293295936485SShri Abhyankar         tmp = mycols[nzcount++]/bs; /* block col. index */
293395936485SShri Abhyankar         if (!mask[tmp]) {
293495936485SShri Abhyankar           mask[tmp] = 1;
293595936485SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
293695936485SShri Abhyankar           else masked1[dcount++] = tmp; /* entry in diag portion */
293795936485SShri Abhyankar         }
293895936485SShri Abhyankar       }
293995936485SShri Abhyankar       rowcount++;
294095936485SShri Abhyankar     }
294195936485SShri Abhyankar 
294295936485SShri Abhyankar     dlens[i]  = dcount;  /* d_nzz[i] */
294395936485SShri Abhyankar     odlens[i] = odcount; /* o_nzz[i] */
294495936485SShri Abhyankar 
294595936485SShri Abhyankar     /* zero out the mask elements we set */
294695936485SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
294795936485SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
294895936485SShri Abhyankar   }
294995936485SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
295095936485SShri Abhyankar   ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
29516816a49fSBarry Smith   ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
295295936485SShri Abhyankar 
295395936485SShri Abhyankar   if (!rank) {
2954785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr);
295595936485SShri Abhyankar     /* read in my part of the matrix numerical values  */
295695936485SShri Abhyankar     nz     = procsnz[0];
295795936485SShri Abhyankar     vals   = buf;
295895936485SShri Abhyankar     mycols = ibuf;
295995936485SShri Abhyankar     if (size == 1) nz -= extra_rows;
29609860990eSLisandro Dalcin     ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
296126fbe8dcSKarl Rupp     if (size == 1) {
296226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
296326fbe8dcSKarl Rupp     }
296495936485SShri Abhyankar 
296595936485SShri Abhyankar     /* insert into matrix */
296695936485SShri Abhyankar     jj = rstart*bs;
296795936485SShri Abhyankar     for (i=0; i<m; i++) {
296895936485SShri Abhyankar       ierr    = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
296995936485SShri Abhyankar       mycols += locrowlens[i];
297095936485SShri Abhyankar       vals   += locrowlens[i];
297195936485SShri Abhyankar       jj++;
297295936485SShri Abhyankar     }
297395936485SShri Abhyankar 
297495936485SShri Abhyankar     /* read in other processors (except the last one) and ship out */
297595936485SShri Abhyankar     for (i=1; i<size-1; i++) {
297695936485SShri Abhyankar       nz   = procsnz[i];
297795936485SShri Abhyankar       vals = buf;
29789860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
297995936485SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
298095936485SShri Abhyankar     }
298195936485SShri Abhyankar     /* the last proc */
298295936485SShri Abhyankar     if (size != 1) {
298395936485SShri Abhyankar       nz   = procsnz[i] - extra_rows;
298495936485SShri Abhyankar       vals = buf;
29859860990eSLisandro Dalcin       ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr);
298695936485SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
298795936485SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
298895936485SShri Abhyankar     }
298995936485SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
299095936485SShri Abhyankar 
299195936485SShri Abhyankar   } else {
299295936485SShri Abhyankar     /* receive numeric values */
2993785e854fSJed Brown     ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr);
299495936485SShri Abhyankar 
299595936485SShri Abhyankar     /* receive message of values*/
299695936485SShri Abhyankar     vals   = buf;
299795936485SShri Abhyankar     mycols = ibuf;
299895936485SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
299995936485SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
300095936485SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
300195936485SShri Abhyankar 
300295936485SShri Abhyankar     /* insert into matrix */
300395936485SShri Abhyankar     jj = rstart*bs;
300495936485SShri Abhyankar     for (i=0; i<m; i++) {
300595936485SShri Abhyankar       ierr    = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
300695936485SShri Abhyankar       mycols += locrowlens[i];
300795936485SShri Abhyankar       vals   += locrowlens[i];
300895936485SShri Abhyankar       jj++;
300995936485SShri Abhyankar     }
301095936485SShri Abhyankar   }
301195936485SShri Abhyankar 
301295936485SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
301395936485SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
301495936485SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
301595936485SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
301695936485SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
301795936485SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
301895936485SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
301995936485SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
302095936485SShri Abhyankar   PetscFunctionReturn(0);
302195936485SShri Abhyankar }
302295936485SShri Abhyankar 
3023dcf5cc72SBarry Smith /*XXXXX@
3024a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3025a30f8f8cSSatish Balay 
3026a30f8f8cSSatish Balay    Input Parameters:
3027a30f8f8cSSatish Balay .  mat  - the matrix
3028a30f8f8cSSatish Balay .  fact - factor
3029a30f8f8cSSatish Balay 
3030c5eb9154SBarry Smith    Not Collective on Mat, each process can have a different hash factor
3031a30f8f8cSSatish Balay 
3032a30f8f8cSSatish Balay    Level: advanced
3033a30f8f8cSSatish Balay 
3034a30f8f8cSSatish Balay   Notes:
3035a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
3036a30f8f8cSSatish Balay 
3037a30f8f8cSSatish Balay .seealso: MatSetOption()
3038dcf5cc72SBarry Smith @XXXXX*/
3039dcf5cc72SBarry Smith 
304024d5174aSHong Zhang 
3041985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
304224d5174aSHong Zhang {
304324d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
3044f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
3045ca54ac64SHong Zhang   PetscReal      atmp;
304687828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
3047dfbe8321SBarry Smith   PetscErrorCode ierr;
30481302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
30491302d50aSBarry Smith   PetscMPIInt    rank,size;
30501302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
305187828ca2SBarry Smith   PetscScalar    *va;
30528a1c53f2SBarry Smith   MatScalar      *ba;
3053f4c0e9e4SHong Zhang   MPI_Status     stat;
305424d5174aSHong Zhang 
305524d5174aSHong Zhang   PetscFunctionBegin;
3056e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
30570298fd71SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr);
30581ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
3059f4c0e9e4SHong Zhang 
3060ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
3061ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
3062f4c0e9e4SHong Zhang 
3063d0f46423SBarry Smith   bs  = A->rmap->bs;
3064f4c0e9e4SHong Zhang   mbs = a->mbs;
3065f4c0e9e4SHong Zhang   Mbs = a->Mbs;
3066f4c0e9e4SHong Zhang   ba  = b->a;
3067f4c0e9e4SHong Zhang   bi  = b->i;
3068f4c0e9e4SHong Zhang   bj  = b->j;
3069f4c0e9e4SHong Zhang 
3070f4c0e9e4SHong Zhang   /* find ownerships */
3071d0f46423SBarry Smith   rowners_bs = A->rmap->range;
3072f4c0e9e4SHong Zhang 
3073f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
3074580bdb30SBarry Smith   ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr);
3075f4c0e9e4SHong Zhang 
3076f4c0e9e4SHong Zhang   /* row_max for B */
3077b8475685SHong Zhang   if (rank != size-1) {
3078f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
3079f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
3080f4c0e9e4SHong Zhang       brow  = bs*i;
3081f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++) {
3082f4c0e9e4SHong Zhang         bcol = bs*(*bj);
3083f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++) {
3084ca54ac64SHong Zhang           col  = bcol + kcol;                /* local col index */
308504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
3086f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++) {
3087f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
3088ca54ac64SHong Zhang             row  = brow + krow;   /* local row index */
3089ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
3090f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
3091f4c0e9e4SHong Zhang           }
3092f4c0e9e4SHong Zhang         }
3093f4c0e9e4SHong Zhang         bj++;
3094f4c0e9e4SHong Zhang       }
3095f4c0e9e4SHong Zhang     }
3096f4c0e9e4SHong Zhang 
3097f4c0e9e4SHong Zhang     /* send values to its owners */
3098f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++) {
3099f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
3100ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
3101ce94432eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
3102ca54ac64SHong Zhang     }
3103f4c0e9e4SHong Zhang   }
3104f4c0e9e4SHong Zhang 
3105f4c0e9e4SHong Zhang   /* receive values */
3106ca54ac64SHong Zhang   if (rank) {
3107f4c0e9e4SHong Zhang     rvalues = work;
3108ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
3109f4c0e9e4SHong Zhang     for (source=0; source<rank; source++) {
3110ce94432eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr);
3111f4c0e9e4SHong Zhang       /* process values */
3112f4c0e9e4SHong Zhang       for (i=0; i<count; i++) {
3113ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
3114f4c0e9e4SHong Zhang       }
3115f4c0e9e4SHong Zhang     }
3116ca54ac64SHong Zhang   }
3117f4c0e9e4SHong Zhang 
31181ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
3119ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
312024d5174aSHong Zhang   PetscFunctionReturn(0);
312124d5174aSHong Zhang }
31222798e883SHong Zhang 
312341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
31242798e883SHong Zhang {
31252798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ*)matin->data;
3126dfbe8321SBarry Smith   PetscErrorCode    ierr;
3127d0f46423SBarry Smith   PetscInt          mbs=mat->mbs,bs=matin->rmap->bs;
31283649974fSBarry Smith   PetscScalar       *x,*ptr,*from;
3129ffe4fb16SHong Zhang   Vec               bb1;
31303649974fSBarry Smith   const PetscScalar *b;
3131ffe4fb16SHong Zhang 
3132ffe4fb16SHong Zhang   PetscFunctionBegin;
3133e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3134e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
3135ffe4fb16SHong Zhang 
3136a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
313741f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3138a2b30743SBarry Smith     PetscFunctionReturn(0);
3139a2b30743SBarry Smith   }
3140a2b30743SBarry Smith 
3141ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
3142ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
314341f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
3144ffe4fb16SHong Zhang       its--;
3145ffe4fb16SHong Zhang     }
3146ffe4fb16SHong Zhang 
3147ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
3148ffe4fb16SHong Zhang     while (its--) {
3149ffe4fb16SHong Zhang 
3150ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
3151ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3152ffe4fb16SHong Zhang 
3153ffe4fb16SHong Zhang       /* copy xx into slvec0a */
31541ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
31551ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3156580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr);
31571ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
3158ffe4fb16SHong Zhang 
3159efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
3160ffe4fb16SHong Zhang 
3161ffe4fb16SHong Zhang       /* copy bb into slvec1a */
31621ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
31633649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
3164580bdb30SBarry Smith       ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr);
31651ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
3166ffe4fb16SHong Zhang 
3167ffe4fb16SHong Zhang       /* set slvec1b = 0 */
3168fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3169ffe4fb16SHong Zhang 
3170ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
31711ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3172a8b09249SBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3173ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3174ffe4fb16SHong Zhang 
3175ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
3176ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
3177ffe4fb16SHong Zhang 
3178ffe4fb16SHong Zhang       /* local diagonal sweep */
317941f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
3180ffe4fb16SHong Zhang     }
31816bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
3182fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
318341f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3184fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
318541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
3186fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
3187fa22f6d0SBarry Smith     Vec               xx1;
3188ace3abfcSBarry Smith     PetscBool         hasop;
318920f1ed55SBarry Smith     const PetscScalar *diag;
3190887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
319120f1ed55SBarry Smith     PetscInt          i,n;
3192fa22f6d0SBarry Smith 
3193fa22f6d0SBarry Smith     if (!mat->xx1) {
3194fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
3195fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
3196fa22f6d0SBarry Smith     }
3197fa22f6d0SBarry Smith     xx1 = mat->xx1;
3198fa22f6d0SBarry Smith     bb1 = mat->bb1;
3199fa22f6d0SBarry Smith 
320041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
3201fa22f6d0SBarry Smith 
3202fa22f6d0SBarry Smith     if (!mat->diag) {
3203effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
32042a7a6963SBarry Smith       ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr);
3205fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
3206fa22f6d0SBarry Smith     }
3207fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
3208fa22f6d0SBarry Smith 
3209fa22f6d0SBarry Smith     if (hasop) {
3210fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
3211887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
321220f1ed55SBarry Smith     } else {
321320f1ed55SBarry Smith       /*
321420f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
321520f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
3216887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
321720f1ed55SBarry Smith       */
321820f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
32193649974fSBarry Smith       ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr);
32203649974fSBarry Smith       ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
322120f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
322220f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
3223887ee2caSBarry Smith       if (omega == 1.0) {
322426fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i];
322520f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
3226887ee2caSBarry Smith       } else {
322726fbe8dcSKarl Rupp         for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i];
3228887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
3229887ee2caSBarry Smith       }
323020f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
32313649974fSBarry Smith       ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr);
32323649974fSBarry Smith       ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
323320f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
323420f1ed55SBarry Smith     }
3235fa22f6d0SBarry Smith 
3236fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
3237fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
3238fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
3239fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
3240fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3241580bdb30SBarry Smith     ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr);
3242fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
3243fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3244fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3245fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
3246effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
3247fa22f6d0SBarry Smith 
3248fa22f6d0SBarry Smith     /* local sweep */
324941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
3250fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
3251f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
3252ffe4fb16SHong Zhang   PetscFunctionReturn(0);
3253ffe4fb16SHong Zhang }
3254ffe4fb16SHong Zhang 
325541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
3256ffe4fb16SHong Zhang {
3257ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
3258dfbe8321SBarry Smith   PetscErrorCode ierr;
32592798e883SHong Zhang   Vec            lvec1,bb1;
32602798e883SHong Zhang 
32612798e883SHong Zhang   PetscFunctionBegin;
3262e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
3263e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
32642798e883SHong Zhang 
3265c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
32662798e883SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
326741f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
32682798e883SHong Zhang       its--;
32692798e883SHong Zhang     }
32702798e883SHong Zhang 
32712798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
32722798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
32732798e883SHong Zhang     while (its--) {
3274ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32752798e883SHong Zhang 
32762798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
32772798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
3278efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
32792798e883SHong Zhang 
3280ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
32812798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
3282ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32832798e883SHong Zhang 
32842798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
3285efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
32862798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
32872798e883SHong Zhang 
3288ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
32892798e883SHong Zhang 
3290c14dc6b6SHong Zhang       /* diagonal sweep */
329141f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
32922798e883SHong Zhang     }
32936bf464f9SBarry Smith     ierr = VecDestroy(&lvec1);CHKERRQ(ierr);
32946bf464f9SBarry Smith     ierr = VecDestroy(&bb1);CHKERRQ(ierr);
32956bf464f9SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
32962798e883SHong Zhang   PetscFunctionReturn(0);
32972798e883SHong Zhang }
32982798e883SHong Zhang 
3299dfb205c3SBarry Smith /*@
3300dfb205c3SBarry Smith      MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard
3301dfb205c3SBarry Smith          CSR format the local rows.
3302dfb205c3SBarry Smith 
3303d083f849SBarry Smith    Collective
3304dfb205c3SBarry Smith 
3305dfb205c3SBarry Smith    Input Parameters:
3306dfb205c3SBarry Smith +  comm - MPI communicator
3307dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3308dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3309dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3310dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3311dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3312dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3313dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3314483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
3315dfb205c3SBarry Smith .   j - column indices
3316dfb205c3SBarry Smith -   a - matrix values
3317dfb205c3SBarry Smith 
3318dfb205c3SBarry Smith    Output Parameter:
3319dfb205c3SBarry Smith .   mat - the matrix
3320dfb205c3SBarry Smith 
3321dfb205c3SBarry Smith    Level: intermediate
3322dfb205c3SBarry Smith 
3323dfb205c3SBarry Smith    Notes:
3324dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3325dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3326dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3327dfb205c3SBarry Smith 
3328dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3329dfb205c3SBarry Smith 
3330dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
333169b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3332dfb205c3SBarry Smith @*/
33337087cfbeSBarry Smith PetscErrorCode  MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3334dfb205c3SBarry Smith {
3335dfb205c3SBarry Smith   PetscErrorCode ierr;
3336dfb205c3SBarry Smith 
3337dfb205c3SBarry Smith 
3338dfb205c3SBarry Smith   PetscFunctionBegin;
3339f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3340dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3341dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3342dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3343dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3344dfb205c3SBarry Smith   ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3345dfb205c3SBarry Smith   PetscFunctionReturn(0);
3346dfb205c3SBarry Smith }
3347dfb205c3SBarry Smith 
3348dfb205c3SBarry Smith 
3349dfb205c3SBarry Smith /*@C
3350664954b6SBarry Smith    MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values
3351dfb205c3SBarry Smith 
3352d083f849SBarry Smith    Collective
3353dfb205c3SBarry Smith 
3354dfb205c3SBarry Smith    Input Parameters:
33551c4f3114SJed Brown +  B - the matrix
3356dfb205c3SBarry Smith .  bs - the block size
3357dfb205c3SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
3358dfb205c3SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3359dfb205c3SBarry Smith -  v - optional values in the matrix
3360dfb205c3SBarry Smith 
3361664954b6SBarry Smith    Level: advanced
3362664954b6SBarry Smith 
3363664954b6SBarry Smith    Notes:
33640cd7f59aSBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
33650cd7f59aSBarry Smith    and usually the numerical values as well
33660cd7f59aSBarry Smith 
336750c5228eSBarry Smith    Any entries below the diagonal are ignored
3368dfb205c3SBarry Smith 
336969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ
3370dfb205c3SBarry Smith @*/
33717087cfbeSBarry Smith PetscErrorCode  MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3372dfb205c3SBarry Smith {
33734ac538c5SBarry Smith   PetscErrorCode ierr;
3374dfb205c3SBarry Smith 
3375dfb205c3SBarry Smith   PetscFunctionBegin;
33764ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3377dfb205c3SBarry Smith   PetscFunctionReturn(0);
3378dfb205c3SBarry Smith }
3379dfb205c3SBarry Smith 
338010c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
33814dcd73b1SHong Zhang {
33824dcd73b1SHong Zhang   PetscErrorCode ierr;
338310c56fdeSHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
338410c56fdeSHong Zhang   PetscInt       *indx;
338510c56fdeSHong Zhang   PetscScalar    *values;
3386dfb205c3SBarry Smith 
33874dcd73b1SHong Zhang   PetscFunctionBegin;
33884dcd73b1SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
338910c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
339010c56fdeSHong Zhang     Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inmat->data;
3391de25e9cbSPierre Jolivet     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
339210c56fdeSHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
3393de25e9cbSPierre Jolivet     PetscMPIInt    rank,size;
33944dcd73b1SHong Zhang 
339510c56fdeSHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
339610c56fdeSHong Zhang     mbs = m/bs; Nbs = N/cbs;
339710c56fdeSHong Zhang     if (n == PETSC_DECIDE) {
3398da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
339910c56fdeSHong Zhang     }
3400da91a574SPierre Jolivet     nbs = n/cbs;
34014dcd73b1SHong Zhang 
34024dcd73b1SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
3403de25e9cbSPierre Jolivet     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
3404de25e9cbSPierre Jolivet 
3405de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
3406de25e9cbSPierre Jolivet     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
3407de25e9cbSPierre Jolivet     if (rank == size-1) {
3408de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
3409de25e9cbSPierre Jolivet       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
3410de25e9cbSPierre Jolivet     }
3411de25e9cbSPierre Jolivet 
3412de25e9cbSPierre Jolivet     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3413e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
341410c56fdeSHong Zhang     for (i=0; i<mbs; i++) {
34154dcd73b1SHong Zhang       ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
34164dcd73b1SHong Zhang       nnz  = nnz/bs;
34174dcd73b1SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
34184dcd73b1SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
34194dcd73b1SHong Zhang       ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
34204dcd73b1SHong Zhang     }
3421e491d569SHong Zhang     ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
34224dcd73b1SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
34234dcd73b1SHong Zhang 
34244dcd73b1SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
3425de25e9cbSPierre Jolivet     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
34264dcd73b1SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
3427ce94fc41SPierre Jolivet     ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr);
3428ce94fc41SPierre Jolivet     ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
34294dcd73b1SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
34304dcd73b1SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
34314dcd73b1SHong Zhang   }
34324dcd73b1SHong Zhang 
343310c56fdeSHong Zhang   /* numeric phase */
34344dcd73b1SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
343510c56fdeSHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
34364dcd73b1SHong Zhang 
3437e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
34384dcd73b1SHong Zhang   for (i=0; i<m; i++) {
34394dcd73b1SHong Zhang     ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
34404dcd73b1SHong Zhang     Ii   = i + rstart;
344110c56fdeSHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
34424dcd73b1SHong Zhang     ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
34434dcd73b1SHong Zhang   }
3444e491d569SHong Zhang   ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
344510c56fdeSHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
344610c56fdeSHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
34474dcd73b1SHong Zhang   PetscFunctionReturn(0);
34484dcd73b1SHong Zhang }
3449