1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 76214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 8cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 96214f412SHong Zhang #endif 10b147fbf3SStefano Zampini 11b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 12b147fbf3SStefano Zampini static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 13b147fbf3SStefano Zampini { 14b147fbf3SStefano Zampini Mat preallocator; 15b147fbf3SStefano Zampini PetscInt r,rstart,rend; 16b147fbf3SStefano Zampini PetscInt bs,i,m,n,M,N; 17b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 18b147fbf3SStefano Zampini PetscErrorCode ierr; 19b147fbf3SStefano Zampini 20b147fbf3SStefano Zampini PetscFunctionBegin; 21b147fbf3SStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 22b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B,nm,2); 23b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 24b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i],MAT_CLASSID,3); 25b147fbf3SStefano Zampini ierr = PetscLayoutCompare(B->rmap,X[i]->rmap,&cong);CHKERRQ(ierr); 26b147fbf3SStefano Zampini if (!cong) SETERRQ(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for different layouts"); 27b147fbf3SStefano Zampini } 28b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B,fill,5); 29b147fbf3SStefano Zampini ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 30b147fbf3SStefano Zampini ierr = MatGetSize(B,&M,&N);CHKERRQ(ierr); 31b147fbf3SStefano Zampini ierr = MatGetLocalSize(B,&m,&n);CHKERRQ(ierr); 32b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)B),&preallocator);CHKERRQ(ierr); 33b147fbf3SStefano Zampini ierr = MatSetType(preallocator,MATPREALLOCATOR);CHKERRQ(ierr); 34b147fbf3SStefano Zampini ierr = MatSetBlockSize(preallocator,bs);CHKERRQ(ierr); 35b147fbf3SStefano Zampini ierr = MatSetSizes(preallocator,m,n,M,N);CHKERRQ(ierr); 36b147fbf3SStefano Zampini ierr = MatSetUp(preallocator);CHKERRQ(ierr); 37b147fbf3SStefano Zampini ierr = MatGetOwnershipRange(preallocator,&rstart,&rend);CHKERRQ(ierr); 38b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 39b147fbf3SStefano Zampini PetscInt ncols; 40b147fbf3SStefano Zampini const PetscInt *row; 41b147fbf3SStefano Zampini const PetscScalar *vals; 42b147fbf3SStefano Zampini 43b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 44b147fbf3SStefano Zampini ierr = MatGetRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 45b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 46b147fbf3SStefano Zampini if (symm && symm[i]) { 47b147fbf3SStefano Zampini ierr = MatSetValues(preallocator,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 48b147fbf3SStefano Zampini } 49b147fbf3SStefano Zampini ierr = MatRestoreRow(X[i],r,&ncols,&row,&vals);CHKERRQ(ierr); 50b147fbf3SStefano Zampini } 51b147fbf3SStefano Zampini } 52b147fbf3SStefano Zampini ierr = MatAssemblyBegin(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 53b147fbf3SStefano Zampini ierr = MatAssemblyEnd(preallocator,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 54b147fbf3SStefano Zampini ierr = MatPreallocatorPreallocate(preallocator,fill,B);CHKERRQ(ierr); 55b147fbf3SStefano Zampini ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 56b147fbf3SStefano Zampini PetscFunctionReturn(0); 57b147fbf3SStefano Zampini } 58b147fbf3SStefano Zampini 5928d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 60b147fbf3SStefano Zampini { 61b147fbf3SStefano Zampini Mat B; 62b147fbf3SStefano Zampini PetscErrorCode ierr; 63b147fbf3SStefano Zampini PetscInt r; 64b147fbf3SStefano Zampini 65b147fbf3SStefano Zampini PetscFunctionBegin; 66b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 6728d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE,isdense; 68b147fbf3SStefano Zampini PetscInt bs; 69b147fbf3SStefano Zampini 70b147fbf3SStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 71b147fbf3SStefano Zampini ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 72b147fbf3SStefano Zampini ierr = MatSetType(B,newtype);CHKERRQ(ierr); 73b147fbf3SStefano Zampini ierr = MatGetBlockSize(A,&bs);CHKERRQ(ierr); 74b147fbf3SStefano Zampini ierr = MatSetBlockSize(B,bs);CHKERRQ(ierr); 75b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 76b147fbf3SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 7728d58a37SPierre Jolivet ierr = PetscObjectTypeCompareAny((PetscObject)B,&isdense,MATSEQDENSE,MATMPIDENSE,MATSEQDENSECUDA,"");CHKERRQ(ierr); 7828d58a37SPierre Jolivet if (!isdense) { 79b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 80b147fbf3SStefano Zampini ierr = MatPreallocateWithMats_Private(B,1,&A,&symm,PETSC_TRUE);CHKERRQ(ierr); 81b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 8228d58a37SPierre Jolivet } else { 8328d58a37SPierre Jolivet ierr = MatSetUp(B);CHKERRQ(ierr); 8428d58a37SPierre Jolivet } 8528d58a37SPierre Jolivet } else { 8628d58a37SPierre Jolivet B = *newmat; 8728d58a37SPierre Jolivet ierr = MatZeroEntries(B);CHKERRQ(ierr); 8828d58a37SPierre Jolivet } 89b147fbf3SStefano Zampini 90b147fbf3SStefano Zampini ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 91b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 92b147fbf3SStefano Zampini PetscInt ncols; 93b147fbf3SStefano Zampini const PetscInt *row; 94b147fbf3SStefano Zampini const PetscScalar *vals; 95b147fbf3SStefano Zampini 96b147fbf3SStefano Zampini ierr = MatGetRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 97b147fbf3SStefano Zampini ierr = MatSetValues(B,1,&r,ncols,row,vals,INSERT_VALUES);CHKERRQ(ierr); 98*eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 99*eb1ec7c1SStefano Zampini if (A->hermitian) { 100*eb1ec7c1SStefano Zampini PetscInt i; 101*eb1ec7c1SStefano Zampini for (i = 0; i < ncols; i++) { 102*eb1ec7c1SStefano Zampini ierr = MatSetValue(B,row[i],r,PetscConj(vals[i]),INSERT_VALUES);CHKERRQ(ierr); 103*eb1ec7c1SStefano Zampini } 104*eb1ec7c1SStefano Zampini } else { 105b147fbf3SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 106*eb1ec7c1SStefano Zampini } 107*eb1ec7c1SStefano Zampini #else 108*eb1ec7c1SStefano Zampini ierr = MatSetValues(B,ncols,row,1,&r,vals,INSERT_VALUES);CHKERRQ(ierr); 109*eb1ec7c1SStefano Zampini #endif 110b147fbf3SStefano Zampini ierr = MatRestoreRow(A,r,&ncols,&row,&vals);CHKERRQ(ierr); 111b147fbf3SStefano Zampini } 112b147fbf3SStefano Zampini ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 113b147fbf3SStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 114b147fbf3SStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 115b147fbf3SStefano Zampini 116b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 117b147fbf3SStefano Zampini ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 118b147fbf3SStefano Zampini } else { 119b147fbf3SStefano Zampini *newmat = B; 120b147fbf3SStefano Zampini } 121b147fbf3SStefano Zampini PetscFunctionReturn(0); 122b147fbf3SStefano Zampini } 123b147fbf3SStefano Zampini 1247087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 125a30f8f8cSSatish Balay { 126f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 127dfbe8321SBarry Smith PetscErrorCode ierr; 128a30f8f8cSSatish Balay 129a30f8f8cSSatish Balay PetscFunctionBegin; 130a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 131a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 132a30f8f8cSSatish Balay PetscFunctionReturn(0); 133a30f8f8cSSatish Balay } 134a30f8f8cSSatish Balay 1357087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 136a30f8f8cSSatish Balay { 137f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 138dfbe8321SBarry Smith PetscErrorCode ierr; 139a30f8f8cSSatish Balay 140a30f8f8cSSatish Balay PetscFunctionBegin; 141a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 142a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 143a30f8f8cSSatish Balay PetscFunctionReturn(0); 144a30f8f8cSSatish Balay } 145a30f8f8cSSatish Balay 146d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 147a30f8f8cSSatish Balay { \ 148a30f8f8cSSatish Balay brow = row/bs; \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 151a30f8f8cSSatish Balay bcol = col/bs; \ 152a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 153a30f8f8cSSatish Balay low = 0; high = nrow; \ 154a30f8f8cSSatish Balay while (high-low > 3) { \ 155a30f8f8cSSatish Balay t = (low+high)/2; \ 156a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 157a30f8f8cSSatish Balay else low = t; \ 158a30f8f8cSSatish Balay } \ 159a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 160a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 161a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 162a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 163a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 164a30f8f8cSSatish Balay else *bap = value; \ 165a30f8f8cSSatish Balay goto a_noinsert; \ 166a30f8f8cSSatish Balay } \ 167a30f8f8cSSatish Balay } \ 168a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 169d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 170fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 171a30f8f8cSSatish Balay N = nrow++ - 1; \ 172a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 173580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 174580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 175580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 176a30f8f8cSSatish Balay rp[_i] = bcol; \ 177a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 178e56f5c9eSBarry Smith A->nonzerostate++;\ 179a30f8f8cSSatish Balay a_noinsert:; \ 180a30f8f8cSSatish Balay ailen[brow] = nrow; \ 181a30f8f8cSSatish Balay } 182e5e170daSBarry Smith 183d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 184a30f8f8cSSatish Balay { \ 185a30f8f8cSSatish Balay brow = row/bs; \ 186a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 187a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 188a30f8f8cSSatish Balay bcol = col/bs; \ 189a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 190a30f8f8cSSatish Balay low = 0; high = nrow; \ 191a30f8f8cSSatish Balay while (high-low > 3) { \ 192a30f8f8cSSatish Balay t = (low+high)/2; \ 193a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 194a30f8f8cSSatish Balay else low = t; \ 195a30f8f8cSSatish Balay } \ 196a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 197a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 198a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 199a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 200a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 201a30f8f8cSSatish Balay else *bap = value; \ 202a30f8f8cSSatish Balay goto b_noinsert; \ 203a30f8f8cSSatish Balay } \ 204a30f8f8cSSatish Balay } \ 205a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 206d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 207fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 208a30f8f8cSSatish Balay N = nrow++ - 1; \ 209a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 210580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr); \ 211580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 212580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay rp[_i] = bcol; \ 214a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 215e56f5c9eSBarry Smith B->nonzerostate++;\ 216a30f8f8cSSatish Balay b_noinsert:; \ 217a30f8f8cSSatish Balay bilen[brow] = nrow; \ 218a30f8f8cSSatish Balay } 219a30f8f8cSSatish Balay 220a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 221476417e5SBarry Smith Any a(i,j) with i>j input by user is ingored or generates an error 222a30f8f8cSSatish Balay */ 223dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 224a30f8f8cSSatish Balay { 225a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 226a30f8f8cSSatish Balay MatScalar value; 227ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 228dfbe8321SBarry Smith PetscErrorCode ierr; 2291302d50aSBarry Smith PetscInt i,j,row,col; 230d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 231d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 232d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 233a30f8f8cSSatish Balay 234a30f8f8cSSatish Balay /* Some Variables required in the macro */ 235a30f8f8cSSatish Balay Mat A = baij->A; 236a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 2371302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 238a30f8f8cSSatish Balay MatScalar *aa =a->a; 239a30f8f8cSSatish Balay 240a30f8f8cSSatish Balay Mat B = baij->B; 241a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 2421302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 243a30f8f8cSSatish Balay MatScalar *ba =b->a; 244a30f8f8cSSatish Balay 2451302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 2461302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 247a30f8f8cSSatish Balay MatScalar *ap,*bap; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay /* for stash */ 2500298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 2510298fd71SBarry Smith MatScalar *v_loc = NULL; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (!baij->donotstash) { 25559ffdab8SBarry Smith if (n > baij->n_loc) { 25659ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 25759ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 258785e854fSJed Brown ierr = PetscMalloc1(n,&baij->in_loc);CHKERRQ(ierr); 259785e854fSJed Brown ierr = PetscMalloc1(n,&baij->v_loc);CHKERRQ(ierr); 26026fbe8dcSKarl Rupp 26159ffdab8SBarry Smith baij->n_loc = n; 26259ffdab8SBarry Smith } 26359ffdab8SBarry Smith in_loc = baij->in_loc; 26459ffdab8SBarry Smith v_loc = baij->v_loc; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay 267a30f8f8cSSatish Balay for (i=0; i<m; i++) { 268a30f8f8cSSatish Balay if (im[i] < 0) continue; 2692515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 270e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 271a30f8f8cSSatish Balay #endif 272a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 273a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 274a30f8f8cSSatish Balay for (j=0; j<n; j++) { 27501b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 27601b2bd88SHong Zhang if (a->ignore_ltriangular) { 27701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 27826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 27901b2bd88SHong Zhang } 280a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 281a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 282a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 283a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 284db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 285db4deed7SKarl Rupp else value = v[i+j*m]; 286d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 287a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 288a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 290cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 291a30f8f8cSSatish Balay #endif 292a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 293a30f8f8cSSatish Balay if (mat->was_assembled) { 294a30f8f8cSSatish Balay if (!baij->colmap) { 295ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 296a30f8f8cSSatish Balay } 297a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 298a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 29971730473SSatish Balay col = col - 1; 300a30f8f8cSSatish Balay #else 30171730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 302a30f8f8cSSatish Balay #endif 303a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 304ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 305a30f8f8cSSatish Balay col = in[j]; 306a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 307a30f8f8cSSatish Balay B = baij->B; 308a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 309a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 310a30f8f8cSSatish Balay ba = b->a; 31171730473SSatish Balay } else col += in[j]%bs; 312a30f8f8cSSatish Balay } else col = in[j]; 313db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 314db4deed7SKarl Rupp else value = v[i+j*m]; 315d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 316a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 317a30f8f8cSSatish Balay } 318a30f8f8cSSatish Balay } 319a30f8f8cSSatish Balay } else { /* off processor entry */ 3204cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 321a30f8f8cSSatish Balay if (!baij->donotstash) { 3225080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 323a30f8f8cSSatish Balay n_loc = 0; 324a30f8f8cSSatish Balay for (j=0; j<n; j++) { 325f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 326a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 327a30f8f8cSSatish Balay if (roworiented) { 328a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 329a30f8f8cSSatish Balay } else { 330a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 331a30f8f8cSSatish Balay } 332a30f8f8cSSatish Balay n_loc++; 333a30f8f8cSSatish Balay } 334b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 335a30f8f8cSSatish Balay } 336a30f8f8cSSatish Balay } 337a30f8f8cSSatish Balay } 338a30f8f8cSSatish Balay PetscFunctionReturn(0); 339a30f8f8cSSatish Balay } 340a30f8f8cSSatish Balay 34136bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 34236bd2089SBarry Smith { 34336bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 34436bd2089SBarry Smith PetscErrorCode ierr; 34536bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 34636bd2089SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 34736bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 34836bd2089SBarry Smith PetscBool roworiented=a->roworiented; 34936bd2089SBarry Smith const PetscScalar *value = v; 35036bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 35136bd2089SBarry Smith 35236bd2089SBarry Smith PetscFunctionBegin; 35336bd2089SBarry Smith if (col < row) { 35436bd2089SBarry Smith if (a->ignore_ltriangular) PetscFunctionReturn(0); /* ignore lower triangular block */ 35536bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 35636bd2089SBarry Smith } 35736bd2089SBarry Smith rp = aj + ai[row]; 35836bd2089SBarry Smith ap = aa + bs2*ai[row]; 35936bd2089SBarry Smith rmax = imax[row]; 36036bd2089SBarry Smith nrow = ailen[row]; 36136bd2089SBarry Smith value = v; 36236bd2089SBarry Smith low = 0; 36336bd2089SBarry Smith high = nrow; 36436bd2089SBarry Smith 36536bd2089SBarry Smith while (high-low > 7) { 36636bd2089SBarry Smith t = (low+high)/2; 36736bd2089SBarry Smith if (rp[t] > col) high = t; 36836bd2089SBarry Smith else low = t; 36936bd2089SBarry Smith } 37036bd2089SBarry Smith for (i=low; i<high; i++) { 37136bd2089SBarry Smith if (rp[i] > col) break; 37236bd2089SBarry Smith if (rp[i] == col) { 37336bd2089SBarry Smith bap = ap + bs2*i; 37436bd2089SBarry Smith if (roworiented) { 37536bd2089SBarry Smith if (is == ADD_VALUES) { 37636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 37736bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 37836bd2089SBarry Smith bap[jj] += *value++; 37936bd2089SBarry Smith } 38036bd2089SBarry Smith } 38136bd2089SBarry Smith } else { 38236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 38336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 38436bd2089SBarry Smith bap[jj] = *value++; 38536bd2089SBarry Smith } 38636bd2089SBarry Smith } 38736bd2089SBarry Smith } 38836bd2089SBarry Smith } else { 38936bd2089SBarry Smith if (is == ADD_VALUES) { 39036bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39136bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39236bd2089SBarry Smith *bap++ += *value++; 39336bd2089SBarry Smith } 39436bd2089SBarry Smith } 39536bd2089SBarry Smith } else { 39636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 39736bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 39836bd2089SBarry Smith *bap++ = *value++; 39936bd2089SBarry Smith } 40036bd2089SBarry Smith } 40136bd2089SBarry Smith } 40236bd2089SBarry Smith } 40336bd2089SBarry Smith goto noinsert2; 40436bd2089SBarry Smith } 40536bd2089SBarry Smith } 40636bd2089SBarry Smith if (nonew == 1) goto noinsert2; 40736bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", orow, ocol); 40836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 40936bd2089SBarry Smith N = nrow++ - 1; high++; 41036bd2089SBarry Smith /* shift up all the later entries in this row */ 411580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 412580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 41336bd2089SBarry Smith rp[i] = col; 41436bd2089SBarry Smith bap = ap + bs2*i; 41536bd2089SBarry Smith if (roworiented) { 41636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 41736bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 41836bd2089SBarry Smith bap[jj] = *value++; 41936bd2089SBarry Smith } 42036bd2089SBarry Smith } 42136bd2089SBarry Smith } else { 42236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 42336bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 42436bd2089SBarry Smith *bap++ = *value++; 42536bd2089SBarry Smith } 42636bd2089SBarry Smith } 42736bd2089SBarry Smith } 42836bd2089SBarry Smith noinsert2:; 42936bd2089SBarry Smith ailen[row] = nrow; 43036bd2089SBarry Smith PetscFunctionReturn(0); 43136bd2089SBarry Smith } 43236bd2089SBarry Smith 43336bd2089SBarry Smith /* 43436bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 43536bd2089SBarry Smith */ 43636bd2089SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 43736bd2089SBarry Smith { 43836bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 43936bd2089SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 44036bd2089SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 44136bd2089SBarry Smith PetscErrorCode ierr; 44236bd2089SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 44336bd2089SBarry Smith PetscBool roworiented=a->roworiented; 44436bd2089SBarry Smith const PetscScalar *value = v; 44536bd2089SBarry Smith MatScalar *ap,*aa = a->a,*bap; 44636bd2089SBarry Smith 44736bd2089SBarry Smith PetscFunctionBegin; 44836bd2089SBarry Smith rp = aj + ai[row]; 44936bd2089SBarry Smith ap = aa + bs2*ai[row]; 45036bd2089SBarry Smith rmax = imax[row]; 45136bd2089SBarry Smith nrow = ailen[row]; 45236bd2089SBarry Smith low = 0; 45336bd2089SBarry Smith high = nrow; 45436bd2089SBarry Smith value = v; 45536bd2089SBarry Smith while (high-low > 7) { 45636bd2089SBarry Smith t = (low+high)/2; 45736bd2089SBarry Smith if (rp[t] > col) high = t; 45836bd2089SBarry Smith else low = t; 45936bd2089SBarry Smith } 46036bd2089SBarry Smith for (i=low; i<high; i++) { 46136bd2089SBarry Smith if (rp[i] > col) break; 46236bd2089SBarry Smith if (rp[i] == col) { 46336bd2089SBarry Smith bap = ap + bs2*i; 46436bd2089SBarry Smith if (roworiented) { 46536bd2089SBarry Smith if (is == ADD_VALUES) { 46636bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 46736bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 46836bd2089SBarry Smith bap[jj] += *value++; 46936bd2089SBarry Smith } 47036bd2089SBarry Smith } 47136bd2089SBarry Smith } else { 47236bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 47336bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 47436bd2089SBarry Smith bap[jj] = *value++; 47536bd2089SBarry Smith } 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } 47836bd2089SBarry Smith } else { 47936bd2089SBarry Smith if (is == ADD_VALUES) { 48036bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48136bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48236bd2089SBarry Smith bap[jj] += value[jj]; 48336bd2089SBarry Smith } 48436bd2089SBarry Smith bap += bs; 48536bd2089SBarry Smith } 48636bd2089SBarry Smith } else { 48736bd2089SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 48836bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 48936bd2089SBarry Smith bap[jj] = value[jj]; 49036bd2089SBarry Smith } 49136bd2089SBarry Smith bap += bs; 49236bd2089SBarry Smith } 49336bd2089SBarry Smith } 49436bd2089SBarry Smith } 49536bd2089SBarry Smith goto noinsert2; 49636bd2089SBarry Smith } 49736bd2089SBarry Smith } 49836bd2089SBarry Smith if (nonew == 1) goto noinsert2; 49936bd2089SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 50036bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 50136bd2089SBarry Smith N = nrow++ - 1; high++; 50236bd2089SBarry Smith /* shift up all the later entries in this row */ 503580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 504580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 50536bd2089SBarry Smith rp[i] = col; 50636bd2089SBarry Smith bap = ap + bs2*i; 50736bd2089SBarry Smith if (roworiented) { 50836bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 50936bd2089SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 51036bd2089SBarry Smith bap[jj] = *value++; 51136bd2089SBarry Smith } 51236bd2089SBarry Smith } 51336bd2089SBarry Smith } else { 51436bd2089SBarry Smith for (ii=0; ii<bs; ii++) { 51536bd2089SBarry Smith for (jj=0; jj<bs; jj++) { 51636bd2089SBarry Smith *bap++ = *value++; 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } 51936bd2089SBarry Smith } 52036bd2089SBarry Smith noinsert2:; 52136bd2089SBarry Smith ailen[row] = nrow; 52236bd2089SBarry Smith PetscFunctionReturn(0); 52336bd2089SBarry Smith } 52436bd2089SBarry Smith 52536bd2089SBarry Smith /* 52636bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 52736bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 52836bd2089SBarry Smith */ 529dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 530a30f8f8cSSatish Balay { 5310880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 532f15d580aSBarry Smith const MatScalar *value; 533f15d580aSBarry Smith MatScalar *barray =baij->barray; 534ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 535dfbe8321SBarry Smith PetscErrorCode ierr; 536899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 537476417e5SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 538476417e5SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 5390880e062SHong Zhang 540a30f8f8cSSatish Balay PetscFunctionBegin; 5410880e062SHong Zhang if (!barray) { 542785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 5430880e062SHong Zhang baij->barray = barray; 5440880e062SHong Zhang } 5450880e062SHong Zhang 5460880e062SHong Zhang if (roworiented) { 5470880e062SHong Zhang stepval = (n-1)*bs; 5480880e062SHong Zhang } else { 5490880e062SHong Zhang stepval = (m-1)*bs; 5500880e062SHong Zhang } 5510880e062SHong Zhang for (i=0; i<m; i++) { 5520880e062SHong Zhang if (im[i] < 0) continue; 5532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 554bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 5550880e062SHong Zhang #endif 5560880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5570880e062SHong Zhang row = im[i] - rstart; 5580880e062SHong Zhang for (j=0; j<n; j++) { 559f3f98c53SJed Brown if (im[i] > in[j]) { 560f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 561e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 562f3f98c53SJed Brown } 5630880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5640880e062SHong Zhang if ((roworiented) && (n == 1)) { 565f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 5660880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 567f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 5680880e062SHong Zhang } else { /* Here a copy is required */ 5690880e062SHong Zhang if (roworiented) { 5700880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 5710880e062SHong Zhang } else { 5720880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 5730880e062SHong Zhang } 5740880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5750880e062SHong Zhang for (jj=0; jj<bs; jj++) { 5760880e062SHong Zhang *barray++ = *value++; 5770880e062SHong Zhang } 5780880e062SHong Zhang } 5790880e062SHong Zhang barray -=bs2; 5800880e062SHong Zhang } 5810880e062SHong Zhang 5820880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 5830880e062SHong Zhang col = in[j] - cstart; 58436bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 58526fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 5862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 587bb003d0fSBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 5880880e062SHong Zhang #endif 5890880e062SHong Zhang else { 5900880e062SHong Zhang if (mat->was_assembled) { 5910880e062SHong Zhang if (!baij->colmap) { 592ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 5930880e062SHong Zhang } 5940880e062SHong Zhang 5952515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 5960880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 5971302d50aSBarry Smith { PetscInt data; 5980880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 599e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 6000880e062SHong Zhang } 6010880e062SHong Zhang #else 602e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 6030880e062SHong Zhang #endif 6040880e062SHong Zhang #endif 6050880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6060880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 6070880e062SHong Zhang col = (col - 1)/bs; 6080880e062SHong Zhang #else 6090880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 6100880e062SHong Zhang #endif 6110880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 612ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 6130880e062SHong Zhang col = in[j]; 6140880e062SHong Zhang } 61526fbe8dcSKarl Rupp } else col = in[j]; 61636bd2089SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 6170880e062SHong Zhang } 6180880e062SHong Zhang } 6190880e062SHong Zhang } else { 620bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 6210880e062SHong Zhang if (!baij->donotstash) { 6220880e062SHong Zhang if (roworiented) { 6230880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6240880e062SHong Zhang } else { 6250880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6260880e062SHong Zhang } 6270880e062SHong Zhang } 6280880e062SHong Zhang } 6290880e062SHong Zhang } 6300880e062SHong Zhang PetscFunctionReturn(0); 631a30f8f8cSSatish Balay } 632a30f8f8cSSatish Balay 6331302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 634a30f8f8cSSatish Balay { 635f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 6366849ba73SBarry Smith PetscErrorCode ierr; 637d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 638d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 639a30f8f8cSSatish Balay 640a30f8f8cSSatish Balay PetscFunctionBegin; 641a30f8f8cSSatish Balay for (i=0; i<m; i++) { 642e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 643e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 644a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 645a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 646a30f8f8cSSatish Balay for (j=0; j<n; j++) { 647e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 648e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 649a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 650a30f8f8cSSatish Balay col = idxn[j] - bscstart; 651c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 652a30f8f8cSSatish Balay } else { 653a30f8f8cSSatish Balay if (!baij->colmap) { 654ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } 656a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 657a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 658a30f8f8cSSatish Balay data--; 659a30f8f8cSSatish Balay #else 660a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 661a30f8f8cSSatish Balay #endif 662a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 663a30f8f8cSSatish Balay else { 664a30f8f8cSSatish Balay col = data + idxn[j]%bs; 665e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay } 669f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 670a30f8f8cSSatish Balay } 671a30f8f8cSSatish Balay PetscFunctionReturn(0); 672a30f8f8cSSatish Balay } 673a30f8f8cSSatish Balay 674dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 675a30f8f8cSSatish Balay { 676a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 677dfbe8321SBarry Smith PetscErrorCode ierr; 678a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 679a30f8f8cSSatish Balay 680a30f8f8cSSatish Balay PetscFunctionBegin; 681a30f8f8cSSatish Balay if (baij->size == 1) { 682a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 683a30f8f8cSSatish Balay } else { 684a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 685785e854fSJed Brown ierr = PetscMalloc1(2,&lnorm2);CHKERRQ(ierr); 686a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 687a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 688a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 689a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 690b2566f29SBarry Smith ierr = MPIU_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6918f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 692a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 6930b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 6940b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 6950b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 6960b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 697899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 698d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 6990b8dc8d2SHong Zhang MatScalar *v; 7000b8dc8d2SHong Zhang 701dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&rsum,mat->cmap->N,&rsum2);CHKERRQ(ierr); 702580bdb30SBarry Smith ierr = PetscArrayzero(rsum,mat->cmap->N);CHKERRQ(ierr); 7030b8dc8d2SHong Zhang /* Amat */ 7040b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 7050b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7060b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7070b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 7080b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7090b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 7100b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7110b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7120b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7130b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7140b8dc8d2SHong Zhang /* non-diagonal block */ 7150b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 7160b8dc8d2SHong Zhang } 7170b8dc8d2SHong Zhang } 7180b8dc8d2SHong Zhang } 71951f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7200b8dc8d2SHong Zhang } 7210b8dc8d2SHong Zhang /* Bmat */ 7220b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 7230b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 7240b8dc8d2SHong Zhang grow = bs*(rstart + brow); 7250b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 7260b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 7270b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 7280b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 7290b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 7300b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 7310b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 7320b8dc8d2SHong Zhang rsum[grow+row] += vabs; 7330b8dc8d2SHong Zhang } 7340b8dc8d2SHong Zhang } 7350b8dc8d2SHong Zhang } 73651f70360SJed Brown ierr = PetscLogFlops(nz*bs*bs);CHKERRQ(ierr); 7370b8dc8d2SHong Zhang } 738b2566f29SBarry Smith ierr = MPIU_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7390b8dc8d2SHong Zhang *norm = 0.0; 740d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 7410b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7420b8dc8d2SHong Zhang } 74374ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 744f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay PetscFunctionReturn(0); 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay 749dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 750a30f8f8cSSatish Balay { 751a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 752dfbe8321SBarry Smith PetscErrorCode ierr; 7531302d50aSBarry Smith PetscInt nstash,reallocs; 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay PetscFunctionBegin; 75626fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 757a30f8f8cSSatish Balay 758d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7591e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7611e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 762a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7631e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 764a30f8f8cSSatish Balay PetscFunctionReturn(0); 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay 767dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 768a30f8f8cSSatish Balay { 769a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 770a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 7716849ba73SBarry Smith PetscErrorCode ierr; 77213f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 773e44c0bd4SBarry Smith PetscInt *row,*col; 774ace3abfcSBarry Smith PetscBool other_disassembled; 77513f74950SBarry Smith PetscMPIInt n; 776ace3abfcSBarry Smith PetscBool r1,r2,r3; 777a30f8f8cSSatish Balay MatScalar *val; 778a30f8f8cSSatish Balay 77991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 780a30f8f8cSSatish Balay PetscFunctionBegin; 7814cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 782a30f8f8cSSatish Balay while (1) { 783a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 784a30f8f8cSSatish Balay if (!flg) break; 785a30f8f8cSSatish Balay 786a30f8f8cSSatish Balay for (i=0; i<n;) { 787a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 78826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 78926fbe8dcSKarl Rupp if (row[j] != rstart) break; 79026fbe8dcSKarl Rupp } 791a30f8f8cSSatish Balay if (j < n) ncols = j-i; 792a30f8f8cSSatish Balay else ncols = n-i; 793a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 7944b4eb8d3SJed Brown ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 795a30f8f8cSSatish Balay i = j; 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay } 798a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 799a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 800a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 801a30f8f8cSSatish Balay restore the original flags */ 802a30f8f8cSSatish Balay r1 = baij->roworiented; 803a30f8f8cSSatish Balay r2 = a->roworiented; 80491c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 80526fbe8dcSKarl Rupp 806a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 807a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 80826fbe8dcSKarl Rupp 80991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 810a30f8f8cSSatish Balay while (1) { 811a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 812a30f8f8cSSatish Balay if (!flg) break; 813a30f8f8cSSatish Balay 814a30f8f8cSSatish Balay for (i=0; i<n;) { 815a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 81626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 81726fbe8dcSKarl Rupp if (row[j] != rstart) break; 81826fbe8dcSKarl Rupp } 819a30f8f8cSSatish Balay if (j < n) ncols = j-i; 820a30f8f8cSSatish Balay else ncols = n-i; 8214b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 822a30f8f8cSSatish Balay i = j; 823a30f8f8cSSatish Balay } 824a30f8f8cSSatish Balay } 825a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 82626fbe8dcSKarl Rupp 827a30f8f8cSSatish Balay baij->roworiented = r1; 828a30f8f8cSSatish Balay a->roworiented = r2; 82926fbe8dcSKarl Rupp 83091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 831a30f8f8cSSatish Balay } 832a30f8f8cSSatish Balay 833a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 834a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 835a30f8f8cSSatish Balay 836a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 837a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 838a30f8f8cSSatish Balay /* 839a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 840a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 841a30f8f8cSSatish Balay */ 842a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 843b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 844a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 845ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 846a30f8f8cSSatish Balay } 847a30f8f8cSSatish Balay } 848a30f8f8cSSatish Balay 849a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 85040781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 853a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 854a30f8f8cSSatish Balay 85574ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 85626fbe8dcSKarl Rupp 857a30f8f8cSSatish Balay baij->rowvalues = 0; 8584f9cfa9eSBarry Smith 8594f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8604f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 861e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 862b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 863e56f5c9eSBarry Smith } 864a30f8f8cSSatish Balay PetscFunctionReturn(0); 865a30f8f8cSSatish Balay } 866a30f8f8cSSatish Balay 867dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 8689804daf3SBarry Smith #include <petscdraw.h> 8696849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 870a30f8f8cSSatish Balay { 871a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 872dfbe8321SBarry Smith PetscErrorCode ierr; 873d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 8747da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 875ace3abfcSBarry Smith PetscBool iascii,isdraw; 876b0a32e0cSBarry Smith PetscViewer sviewer; 877f3ef73ceSBarry Smith PetscViewerFormat format; 878a30f8f8cSSatish Balay 879a30f8f8cSSatish Balay PetscFunctionBegin; 880251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 881251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 88232077d6dSBarry Smith if (iascii) { 883b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 884456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 885a30f8f8cSSatish Balay MatInfo info; 886ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 887a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 8881575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 889b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 890a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 891e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 892a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 893e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 894b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8951575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 89607d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 897a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 898a30f8f8cSSatish Balay PetscFunctionReturn(0); 899fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 90077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 901a30f8f8cSSatish Balay PetscFunctionReturn(0); 902c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 903c1490034SHong Zhang PetscFunctionReturn(0); 904a30f8f8cSSatish Balay } 905a30f8f8cSSatish Balay } 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay if (isdraw) { 908b0a32e0cSBarry Smith PetscDraw draw; 909ace3abfcSBarry Smith PetscBool isnull; 910b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 91145f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 91245f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 913a30f8f8cSSatish Balay } 914a30f8f8cSSatish Balay 9157da1fb6eSBarry Smith { 916a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 917a30f8f8cSSatish Balay Mat A; 91865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 91965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 920d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 921a30f8f8cSSatish Balay MatScalar *a; 9223e219373SBarry Smith const char *matname; 923a30f8f8cSSatish Balay 924f204ca49SKris Buschelman /* Should this be the same type as mat? */ 925ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 926a30f8f8cSSatish Balay if (!rank) { 927f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 928a30f8f8cSSatish Balay } else { 929f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 930a30f8f8cSSatish Balay } 931f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 9320298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9332b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay /* copy over the A part */ 93765d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 938a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 939785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 940a30f8f8cSSatish Balay 941a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 942e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 94326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 944a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 945e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 946a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 947dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 94826fbe8dcSKarl Rupp col++; 94926fbe8dcSKarl Rupp a += bs; 950a30f8f8cSSatish Balay } 951a30f8f8cSSatish Balay } 952a30f8f8cSSatish Balay } 953a30f8f8cSSatish Balay /* copy over the B part */ 95465d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 95565d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 956a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 957e9f7bc9eSHong Zhang 958e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 95926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 960a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 961a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 962a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 963799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 96426fbe8dcSKarl Rupp col++; 96526fbe8dcSKarl Rupp a += bs; 966a30f8f8cSSatish Balay } 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay } 969a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 970a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 971a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 972a30f8f8cSSatish Balay /* 973a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 974b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 975a30f8f8cSSatish Balay */ 9763f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 977ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 9783e219373SBarry Smith if (!rank) { 979ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 980383922c3SLisandro Dalcin ierr = MatView_SeqSBAIJ(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 981a30f8f8cSSatish Balay } 9823f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 9831575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9846bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 985a30f8f8cSSatish Balay } 986a30f8f8cSSatish Balay PetscFunctionReturn(0); 987a30f8f8cSSatish Balay } 988a30f8f8cSSatish Balay 989d1654148SHong Zhang static PetscErrorCode MatView_MPISBAIJ_Binary(Mat mat,PetscViewer viewer) 990d1654148SHong Zhang { 991d1654148SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)mat->data; 992d1654148SHong Zhang Mat_SeqSBAIJ *A = (Mat_SeqSBAIJ*)a->A->data; 993d1654148SHong Zhang Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 994d1654148SHong Zhang PetscErrorCode ierr; 995d1654148SHong Zhang PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 996d1654148SHong Zhang PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 997d1654148SHong Zhang int fd; 998d1654148SHong Zhang PetscScalar *column_values; 999d1654148SHong Zhang FILE *file; 1000d1654148SHong Zhang PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1001d1654148SHong Zhang PetscInt message_count,flowcontrolcount; 1002d1654148SHong Zhang 1003d1654148SHong Zhang PetscFunctionBegin; 1004d1654148SHong Zhang ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1005d1654148SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 1006d1654148SHong Zhang nz = bs2*(A->nz + B->nz); 1007d1654148SHong Zhang rlen = mat->rmap->n; 1008d1654148SHong Zhang ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1009d1654148SHong Zhang if (!rank) { 1010d1654148SHong Zhang header[0] = MAT_FILE_CLASSID; 1011d1654148SHong Zhang header[1] = mat->rmap->N; 1012d1654148SHong Zhang header[2] = mat->cmap->N; 1013d1654148SHong Zhang 1014d1654148SHong Zhang ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1015d1654148SHong Zhang ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1016d1654148SHong Zhang /* get largest number of rows any processor has */ 1017d1654148SHong Zhang range = mat->rmap->range; 1018d1654148SHong Zhang for (i=1; i<size; i++) { 1019d1654148SHong Zhang rlen = PetscMax(rlen,range[i+1] - range[i]); 1020d1654148SHong Zhang } 1021d1654148SHong Zhang } else { 1022d1654148SHong Zhang ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1023d1654148SHong Zhang } 1024d1654148SHong Zhang 1025d1654148SHong Zhang ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 1026d1654148SHong Zhang /* compute lengths of each row */ 1027d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1028d1654148SHong Zhang crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1029d1654148SHong Zhang } 1030d1654148SHong Zhang /* store the row lengths to the file */ 1031d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1032d1654148SHong Zhang if (!rank) { 1033d1654148SHong Zhang MPI_Status status; 1034d1654148SHong Zhang ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1035d1654148SHong Zhang rlen = (range[1] - range[0])/bs; 1036d1654148SHong Zhang for (i=0; i<rlen; i++) { 1037d1654148SHong Zhang for (j=0; j<bs; j++) { 1038d1654148SHong Zhang row_lens[i*bs+j] = bs*crow_lens[i]; 1039d1654148SHong Zhang } 1040d1654148SHong Zhang } 1041d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1042d1654148SHong Zhang for (i=1; i<size; i++) { 1043d1654148SHong Zhang rlen = (range[i+1] - range[i])/bs; 1044d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1045d1654148SHong Zhang ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1046d1654148SHong Zhang for (k=0; k<rlen; k++) { 1047d1654148SHong Zhang for (j=0; j<bs; j++) { 1048d1654148SHong Zhang row_lens[k*bs+j] = bs*crow_lens[k]; 1049d1654148SHong Zhang } 1050d1654148SHong Zhang } 1051d1654148SHong Zhang ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1052d1654148SHong Zhang } 1053d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1054d1654148SHong Zhang ierr = PetscFree(row_lens);CHKERRQ(ierr); 1055d1654148SHong Zhang } else { 1056d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1057d1654148SHong Zhang ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1058d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1059d1654148SHong Zhang } 1060d1654148SHong Zhang ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1061d1654148SHong Zhang 1062d1654148SHong Zhang /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1063d1654148SHong Zhang information needed to make it for each row from a block row. This does require more communication but still not more than 1064d1654148SHong Zhang the communication needed for the nonzero values */ 1065d1654148SHong Zhang nzmax = nz; /* space a largest processor needs */ 1066d1654148SHong Zhang ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1067d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1068d1654148SHong Zhang cnt = 0; 1069d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1070d1654148SHong Zhang pcnt = cnt; 1071d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1072d1654148SHong Zhang if ((col = garray[B->j[j]]) > cstart) break; 1073d1654148SHong Zhang for (l=0; l<bs; l++) { 1074d1654148SHong Zhang column_indices[cnt++] = bs*col+l; 1075d1654148SHong Zhang } 1076d1654148SHong Zhang } 1077d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1078d1654148SHong Zhang for (l=0; l<bs; l++) { 1079d1654148SHong Zhang column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1080d1654148SHong Zhang } 1081d1654148SHong Zhang } 1082d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1083d1654148SHong Zhang for (l=0; l<bs; l++) { 1084d1654148SHong Zhang column_indices[cnt++] = bs*garray[B->j[j]]+l; 1085d1654148SHong Zhang } 1086d1654148SHong Zhang } 1087d1654148SHong Zhang len = cnt - pcnt; 1088d1654148SHong Zhang for (k=1; k<bs; k++) { 1089580bdb30SBarry Smith ierr = PetscArraycpy(&column_indices[cnt],&column_indices[pcnt],len);CHKERRQ(ierr); 1090d1654148SHong Zhang cnt += len; 1091d1654148SHong Zhang } 1092d1654148SHong Zhang } 1093d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1094d1654148SHong Zhang 1095d1654148SHong Zhang /* store the columns to the file */ 1096d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1097d1654148SHong Zhang if (!rank) { 1098d1654148SHong Zhang MPI_Status status; 1099d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1100d1654148SHong Zhang for (i=1; i<size; i++) { 1101d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1102d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1103d1654148SHong Zhang ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1104d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1105d1654148SHong Zhang } 1106d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1107d1654148SHong Zhang } else { 1108d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1109d1654148SHong Zhang ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1110d1654148SHong Zhang ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1111d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1112d1654148SHong Zhang } 1113d1654148SHong Zhang ierr = PetscFree(column_indices);CHKERRQ(ierr); 1114d1654148SHong Zhang 1115d1654148SHong Zhang /* load up the numerical values */ 1116d1654148SHong Zhang ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1117d1654148SHong Zhang cnt = 0; 1118d1654148SHong Zhang for (i=0; i<a->mbs; i++) { 1119d1654148SHong Zhang rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1120d1654148SHong Zhang for (j=B->i[i]; j<B->i[i+1]; j++) { 1121d1654148SHong Zhang if (garray[B->j[j]] > cstart) break; 1122d1654148SHong Zhang for (l=0; l<bs; l++) { 1123d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1124d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1125d1654148SHong Zhang } 1126d1654148SHong Zhang } 1127d1654148SHong Zhang cnt += bs; 1128d1654148SHong Zhang } 1129d1654148SHong Zhang for (k=A->i[i]; k<A->i[i+1]; k++) { 1130d1654148SHong Zhang for (l=0; l<bs; l++) { 1131d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1132d1654148SHong Zhang column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1133d1654148SHong Zhang } 1134d1654148SHong Zhang } 1135d1654148SHong Zhang cnt += bs; 1136d1654148SHong Zhang } 1137d1654148SHong Zhang for (; j<B->i[i+1]; j++) { 1138d1654148SHong Zhang for (l=0; l<bs; l++) { 1139d1654148SHong Zhang for (ll=0; ll<bs; ll++) { 1140d1654148SHong Zhang column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1141d1654148SHong Zhang } 1142d1654148SHong Zhang } 1143d1654148SHong Zhang cnt += bs; 1144d1654148SHong Zhang } 1145d1654148SHong Zhang cnt += (bs-1)*rlen; 1146d1654148SHong Zhang } 1147d1654148SHong Zhang if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1148d1654148SHong Zhang 1149d1654148SHong Zhang /* store the column values to the file */ 1150d1654148SHong Zhang ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1151d1654148SHong Zhang if (!rank) { 1152d1654148SHong Zhang MPI_Status status; 1153d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1154d1654148SHong Zhang for (i=1; i<size; i++) { 1155d1654148SHong Zhang ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1156d1654148SHong Zhang ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1157d1654148SHong Zhang ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1158d1654148SHong Zhang ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1159d1654148SHong Zhang } 1160d1654148SHong Zhang ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1161d1654148SHong Zhang } else { 1162d1654148SHong Zhang ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1163d1654148SHong Zhang ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1164d1654148SHong Zhang ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1165d1654148SHong Zhang ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1166d1654148SHong Zhang } 1167d1654148SHong Zhang ierr = PetscFree(column_values);CHKERRQ(ierr); 1168d1654148SHong Zhang 1169d1654148SHong Zhang ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1170d1654148SHong Zhang if (file) { 1171d1654148SHong Zhang fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1172d1654148SHong Zhang } 1173d1654148SHong Zhang PetscFunctionReturn(0); 1174d1654148SHong Zhang } 1175d1654148SHong Zhang 1176dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 1177a30f8f8cSSatish Balay { 1178dfbe8321SBarry Smith PetscErrorCode ierr; 1179ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 1180a30f8f8cSSatish Balay 1181a30f8f8cSSatish Balay PetscFunctionBegin; 1182251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1183251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1184251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1185251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1186d1654148SHong Zhang if (iascii || isdraw || issocket) { 1187a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1188d1654148SHong Zhang } else if (isbinary) { 1189d1654148SHong Zhang ierr = MatView_MPISBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay PetscFunctionReturn(0); 1192a30f8f8cSSatish Balay } 1193a30f8f8cSSatish Balay 1194dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 1195a30f8f8cSSatish Balay { 1196a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1197dfbe8321SBarry Smith PetscErrorCode ierr; 1198a30f8f8cSSatish Balay 1199a30f8f8cSSatish Balay PetscFunctionBegin; 1200a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 1201d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 1202a30f8f8cSSatish Balay #endif 1203a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 1204a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12056bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12066bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1207a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 12086bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 1209a30f8f8cSSatish Balay #else 121005b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay #endif 121205b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12136bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12146bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 12156bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 12166bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 12176bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 12186bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 12196bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 12206bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 12215755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 122205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 122305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 12246bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 12256bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 12266bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 1227ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 122805b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 1229a30f8f8cSSatish Balay #endif 123059ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 123159ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 1232899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1233bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1234901853e0SKris Buschelman 1235dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1236bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1237bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1238bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1239d2c30c80SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 12406214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 12416214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_elemental_C",NULL);CHKERRQ(ierr); 12426214f412SHong Zhang #endif 1243b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpiaij_C",NULL);CHKERRQ(ierr); 1244b147fbf3SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpibaij_C",NULL);CHKERRQ(ierr); 1245a30f8f8cSSatish Balay PetscFunctionReturn(0); 1246a30f8f8cSSatish Balay } 1247a30f8f8cSSatish Balay 1248547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 1249547795f9SHong Zhang { 1250547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1251547795f9SHong Zhang PetscErrorCode ierr; 1252*eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 12536de40e93SBarry Smith PetscScalar *from; 12546de40e93SBarry Smith const PetscScalar *x; 1255547795f9SHong Zhang 1256547795f9SHong Zhang PetscFunctionBegin; 1257547795f9SHong Zhang /* diagonal part */ 1258547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1259547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1260547795f9SHong Zhang 1261547795f9SHong Zhang /* subdiagonal part */ 1262547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1263547795f9SHong Zhang 1264547795f9SHong Zhang /* copy x into the vec slvec0 */ 1265547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 12666de40e93SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1267547795f9SHong Zhang 1268580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1269547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 12706de40e93SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1271547795f9SHong Zhang 1272547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1273547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1274547795f9SHong Zhang /* supperdiagonal part */ 1275547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1276547795f9SHong Zhang PetscFunctionReturn(0); 1277547795f9SHong Zhang } 1278547795f9SHong Zhang 1279dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 1280a9d4b620SHong Zhang { 1281a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1282dfbe8321SBarry Smith PetscErrorCode ierr; 1283*eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1284d9ca1df4SBarry Smith PetscScalar *from; 1285d9ca1df4SBarry Smith const PetscScalar *x; 1286a9d4b620SHong Zhang 1287a9d4b620SHong Zhang PetscFunctionBegin; 1288a9d4b620SHong Zhang /* diagonal part */ 1289a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 1290fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 1291a9d4b620SHong Zhang 1292a9d4b620SHong Zhang /* subdiagonal part */ 1293a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1294fc165ae2SBarry Smith 1295a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 12961ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1297d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1298a9d4b620SHong Zhang 1299580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1300fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1301d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1302fc165ae2SBarry Smith 1303fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1304ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1305a9d4b620SHong Zhang /* supperdiagonal part */ 1306a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 1307a9d4b620SHong Zhang PetscFunctionReturn(0); 1308a9d4b620SHong Zhang } 1309a9d4b620SHong Zhang 1310dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 1311a30f8f8cSSatish Balay { 1312a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1313dfbe8321SBarry Smith PetscErrorCode ierr; 13141302d50aSBarry Smith PetscInt nt; 1315a30f8f8cSSatish Balay 1316a30f8f8cSSatish Balay PetscFunctionBegin; 1317a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1318e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1319e7e72b3dSBarry Smith 1320a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1321e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 132265d70643SHong Zhang 1323ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1324b941877fSHong Zhang /* do diagonal part */ 1325b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1326b941877fSHong Zhang /* do supperdiagonal part */ 1327ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1328b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1329b941877fSHong Zhang /* do subdiagonal part */ 1330b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1331ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1332ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay PetscFunctionReturn(0); 1334a30f8f8cSSatish Balay } 1335a30f8f8cSSatish Balay 1336*eb1ec7c1SStefano Zampini PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz) 1337*eb1ec7c1SStefano Zampini { 1338*eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1339*eb1ec7c1SStefano Zampini PetscErrorCode ierr; 1340*eb1ec7c1SStefano Zampini PetscInt mbs=a->mbs,bs=A->rmap->bs; 1341*eb1ec7c1SStefano Zampini PetscScalar *from,zero=0.0; 1342*eb1ec7c1SStefano Zampini const PetscScalar *x; 1343*eb1ec7c1SStefano Zampini 1344*eb1ec7c1SStefano Zampini PetscFunctionBegin; 1345*eb1ec7c1SStefano Zampini /* diagonal part */ 1346*eb1ec7c1SStefano Zampini ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1347*eb1ec7c1SStefano Zampini ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1348*eb1ec7c1SStefano Zampini 1349*eb1ec7c1SStefano Zampini /* subdiagonal part */ 1350*eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1351*eb1ec7c1SStefano Zampini 1352*eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 1353*eb1ec7c1SStefano Zampini ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1354*eb1ec7c1SStefano Zampini ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1355*eb1ec7c1SStefano Zampini ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 1356*eb1ec7c1SStefano Zampini ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1357*eb1ec7c1SStefano Zampini 1358*eb1ec7c1SStefano Zampini ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1359*eb1ec7c1SStefano Zampini ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1360*eb1ec7c1SStefano Zampini ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1361*eb1ec7c1SStefano Zampini 1362*eb1ec7c1SStefano Zampini /* supperdiagonal part */ 1363*eb1ec7c1SStefano Zampini ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1364*eb1ec7c1SStefano Zampini PetscFunctionReturn(0); 1365*eb1ec7c1SStefano Zampini } 1366*eb1ec7c1SStefano Zampini 1367dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1368a30f8f8cSSatish Balay { 1369de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1370dfbe8321SBarry Smith PetscErrorCode ierr; 1371d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 1372d9ca1df4SBarry Smith PetscScalar *from,zero=0.0; 1373d9ca1df4SBarry Smith const PetscScalar *x; 1374a9d4b620SHong Zhang 1375a9d4b620SHong Zhang PetscFunctionBegin; 1376a9d4b620SHong Zhang /* diagonal part */ 1377a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 13782dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 1379a9d4b620SHong Zhang 1380a9d4b620SHong Zhang /* subdiagonal part */ 1381a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1382a9d4b620SHong Zhang 1383a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 13841ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 1385d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 1386580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 13871ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 1388a9d4b620SHong Zhang 1389ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1390d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 1391ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1392a9d4b620SHong Zhang 1393a9d4b620SHong Zhang /* supperdiagonal part */ 1394a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1395a9d4b620SHong Zhang PetscFunctionReturn(0); 1396a9d4b620SHong Zhang } 1397a9d4b620SHong Zhang 1398dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1399a9d4b620SHong Zhang { 1400a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1401dfbe8321SBarry Smith PetscErrorCode ierr; 1402a30f8f8cSSatish Balay 1403a30f8f8cSSatish Balay PetscFunctionBegin; 1404ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1405b941877fSHong Zhang /* do diagonal part */ 1406b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1407b941877fSHong Zhang /* do supperdiagonal part */ 1408ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1409de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1410de8b6608SHong Zhang 1411b941877fSHong Zhang /* do subdiagonal part */ 1412a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1413ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1414ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1415a30f8f8cSSatish Balay PetscFunctionReturn(0); 1416a30f8f8cSSatish Balay } 1417a30f8f8cSSatish Balay 1418a30f8f8cSSatish Balay /* 1419a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1420a30f8f8cSSatish Balay diagonal block 1421a30f8f8cSSatish Balay */ 1422dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1423a30f8f8cSSatish Balay { 1424a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1425dfbe8321SBarry Smith PetscErrorCode ierr; 1426a30f8f8cSSatish Balay 1427a30f8f8cSSatish Balay PetscFunctionBegin; 1428e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1429a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1430a30f8f8cSSatish Balay PetscFunctionReturn(0); 1431a30f8f8cSSatish Balay } 1432a30f8f8cSSatish Balay 1433f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 1434a30f8f8cSSatish Balay { 1435a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1436dfbe8321SBarry Smith PetscErrorCode ierr; 1437a30f8f8cSSatish Balay 1438a30f8f8cSSatish Balay PetscFunctionBegin; 1439f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1440f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 1441a30f8f8cSSatish Balay PetscFunctionReturn(0); 1442a30f8f8cSSatish Balay } 1443a30f8f8cSSatish Balay 14441302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1445a30f8f8cSSatish Balay { 1446d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1447d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1448d0d4cfc2SHong Zhang PetscErrorCode ierr; 1449d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1450d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1451899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1452d0d4cfc2SHong Zhang 1453a30f8f8cSSatish Balay PetscFunctionBegin; 1454e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1455d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1456d0d4cfc2SHong Zhang 1457d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1458d0d4cfc2SHong Zhang /* 1459d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1460d0d4cfc2SHong Zhang */ 1461d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1462d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1463d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1464d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1465d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 146626fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1467d0d4cfc2SHong Zhang } 1468dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1469d0d4cfc2SHong Zhang } 1470d0d4cfc2SHong Zhang 1471e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1472d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1473d0d4cfc2SHong Zhang 1474d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1475d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1476d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1477d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1478d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1479d0d4cfc2SHong Zhang nztot = nzA + nzB; 1480d0d4cfc2SHong Zhang 1481d0d4cfc2SHong Zhang cmap = mat->garray; 1482d0d4cfc2SHong Zhang if (v || idx) { 1483d0d4cfc2SHong Zhang if (nztot) { 1484d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1485d0d4cfc2SHong Zhang PetscInt imark = -1; 1486d0d4cfc2SHong Zhang if (v) { 1487d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1488d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1489d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1490d0d4cfc2SHong Zhang else break; 1491d0d4cfc2SHong Zhang } 1492d0d4cfc2SHong Zhang imark = i; 1493d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1494d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1495d0d4cfc2SHong Zhang } 1496d0d4cfc2SHong Zhang if (idx) { 1497d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1498d0d4cfc2SHong Zhang if (imark > -1) { 1499d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1500d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1501d0d4cfc2SHong Zhang } 1502d0d4cfc2SHong Zhang } else { 1503d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 150426fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1505d0d4cfc2SHong Zhang else break; 1506d0d4cfc2SHong Zhang } 1507d0d4cfc2SHong Zhang imark = i; 1508d0d4cfc2SHong Zhang } 1509d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1510d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1511d0d4cfc2SHong Zhang } 1512d0d4cfc2SHong Zhang } else { 1513d0d4cfc2SHong Zhang if (idx) *idx = 0; 1514d0d4cfc2SHong Zhang if (v) *v = 0; 1515d0d4cfc2SHong Zhang } 1516d0d4cfc2SHong Zhang } 1517d0d4cfc2SHong Zhang *nz = nztot; 1518d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1519d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1520a30f8f8cSSatish Balay PetscFunctionReturn(0); 1521a30f8f8cSSatish Balay } 1522a30f8f8cSSatish Balay 15231302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1524a30f8f8cSSatish Balay { 1525a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1526a30f8f8cSSatish Balay 1527a30f8f8cSSatish Balay PetscFunctionBegin; 1528e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1529a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1530a30f8f8cSSatish Balay PetscFunctionReturn(0); 1531a30f8f8cSSatish Balay } 1532a30f8f8cSSatish Balay 1533d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1534d0d4cfc2SHong Zhang { 1535d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1536d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1537d0d4cfc2SHong Zhang 1538d0d4cfc2SHong Zhang PetscFunctionBegin; 1539d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1540d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1541d0d4cfc2SHong Zhang } 1542d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1543d0d4cfc2SHong Zhang { 1544d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1545d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1546d0d4cfc2SHong Zhang 1547d0d4cfc2SHong Zhang PetscFunctionBegin; 1548d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1549d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1550d0d4cfc2SHong Zhang } 1551d0d4cfc2SHong Zhang 155299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 155399cafbc1SBarry Smith { 155499cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 155599cafbc1SBarry Smith PetscErrorCode ierr; 155699cafbc1SBarry Smith 155799cafbc1SBarry Smith PetscFunctionBegin; 155899cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 155999cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 156099cafbc1SBarry Smith PetscFunctionReturn(0); 156199cafbc1SBarry Smith } 156299cafbc1SBarry Smith 156399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 156499cafbc1SBarry Smith { 156599cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 156699cafbc1SBarry Smith PetscErrorCode ierr; 156799cafbc1SBarry Smith 156899cafbc1SBarry Smith PetscFunctionBegin; 156999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 157099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 157199cafbc1SBarry Smith PetscFunctionReturn(0); 157299cafbc1SBarry Smith } 157399cafbc1SBarry Smith 15747dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 157536032a97SHong Zhang Input: isrow - distributed(parallel), 157636032a97SHong Zhang iscol_local - locally owned (seq) 157736032a97SHong Zhang */ 157836032a97SHong Zhang PetscErrorCode ISEqual_private(IS isrow,IS iscol_local,PetscBool *flg) 15798f46ffcaSHong Zhang { 15808f46ffcaSHong Zhang PetscErrorCode ierr; 15818f46ffcaSHong Zhang PetscInt sz1,sz2,*a1,*a2,i,j,k,nmatch; 15828f46ffcaSHong Zhang const PetscInt *ptr1,*ptr2; 158336032a97SHong Zhang 158436032a97SHong Zhang PetscFunctionBegin; 15858f46ffcaSHong Zhang ierr = ISGetLocalSize(isrow,&sz1);CHKERRQ(ierr); 15868f46ffcaSHong Zhang ierr = ISGetLocalSize(iscol_local,&sz2);CHKERRQ(ierr); 15871098a8e8SHong Zhang if (sz1 > sz2) { 15881098a8e8SHong Zhang *flg = PETSC_FALSE; 15891098a8e8SHong Zhang PetscFunctionReturn(0); 15901098a8e8SHong Zhang } 15918f46ffcaSHong Zhang 15928f46ffcaSHong Zhang ierr = ISGetIndices(isrow,&ptr1);CHKERRQ(ierr); 15938f46ffcaSHong Zhang ierr = ISGetIndices(iscol_local,&ptr2);CHKERRQ(ierr); 15948f46ffcaSHong Zhang 15958f46ffcaSHong Zhang ierr = PetscMalloc1(sz1,&a1);CHKERRQ(ierr); 15968f46ffcaSHong Zhang ierr = PetscMalloc1(sz2,&a2);CHKERRQ(ierr); 1597580bdb30SBarry Smith ierr = PetscArraycpy(a1,ptr1,sz1);CHKERRQ(ierr); 1598580bdb30SBarry Smith ierr = PetscArraycpy(a2,ptr2,sz2);CHKERRQ(ierr); 15998f46ffcaSHong Zhang ierr = PetscSortInt(sz1,a1);CHKERRQ(ierr); 16008f46ffcaSHong Zhang ierr = PetscSortInt(sz2,a2);CHKERRQ(ierr); 16018f46ffcaSHong Zhang 16028f46ffcaSHong Zhang nmatch=0; 16038f46ffcaSHong Zhang k = 0; 16048f46ffcaSHong Zhang for (i=0; i<sz1; i++){ 16058f46ffcaSHong Zhang for (j=k; j<sz2; j++){ 16068f46ffcaSHong Zhang if (a1[i] == a2[j]) { 16078f46ffcaSHong Zhang k = j; nmatch++; 16088f46ffcaSHong Zhang break; 16098f46ffcaSHong Zhang } 16108f46ffcaSHong Zhang } 16118f46ffcaSHong Zhang } 16128f46ffcaSHong Zhang ierr = ISRestoreIndices(isrow,&ptr1);CHKERRQ(ierr); 16138f46ffcaSHong Zhang ierr = ISRestoreIndices(iscol_local,&ptr2);CHKERRQ(ierr); 16148f46ffcaSHong Zhang ierr = PetscFree(a1);CHKERRQ(ierr); 16158f46ffcaSHong Zhang ierr = PetscFree(a2);CHKERRQ(ierr); 16161098a8e8SHong Zhang if (nmatch < sz1) { 16171098a8e8SHong Zhang *flg = PETSC_FALSE; 16181098a8e8SHong Zhang } else { 16191098a8e8SHong Zhang *flg = PETSC_TRUE; 16201098a8e8SHong Zhang } 162136032a97SHong Zhang PetscFunctionReturn(0); 16228f46ffcaSHong Zhang } 162336032a97SHong Zhang 16247dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 162536032a97SHong Zhang { 162636032a97SHong Zhang PetscErrorCode ierr; 162736032a97SHong Zhang IS iscol_local; 162836032a97SHong Zhang PetscInt csize; 162936032a97SHong Zhang PetscBool isequal; 163036032a97SHong Zhang 163136032a97SHong Zhang PetscFunctionBegin; 163236032a97SHong Zhang ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 163336032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 163436032a97SHong Zhang ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 163536032a97SHong Zhang if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 163636032a97SHong Zhang } else { 163736032a97SHong Zhang ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 163836032a97SHong Zhang ierr = ISEqual_private(isrow,iscol_local,&isequal);CHKERRQ(ierr); 163936032a97SHong Zhang if (!isequal) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"For symmetric format, iscol must equal isrow"); 16408f46ffcaSHong Zhang } 16418f46ffcaSHong Zhang 16427dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 16437dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 16448f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 16458f46ffcaSHong Zhang ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 16468f46ffcaSHong Zhang ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 16478f46ffcaSHong Zhang } 16488f46ffcaSHong Zhang PetscFunctionReturn(0); 16498f46ffcaSHong Zhang } 16508f46ffcaSHong Zhang 1651dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1652a30f8f8cSSatish Balay { 1653a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1654dfbe8321SBarry Smith PetscErrorCode ierr; 1655a30f8f8cSSatish Balay 1656a30f8f8cSSatish Balay PetscFunctionBegin; 1657a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1658a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1659a30f8f8cSSatish Balay PetscFunctionReturn(0); 1660a30f8f8cSSatish Balay } 1661a30f8f8cSSatish Balay 1662dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1663a30f8f8cSSatish Balay { 1664a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1665a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1666dfbe8321SBarry Smith PetscErrorCode ierr; 16673966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 1668a30f8f8cSSatish Balay 1669a30f8f8cSSatish Balay PetscFunctionBegin; 1670d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 167126fbe8dcSKarl Rupp 1672a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 167326fbe8dcSKarl Rupp 1674a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1675a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 167626fbe8dcSKarl Rupp 1677a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 167826fbe8dcSKarl Rupp 1679a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1680a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1681a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1682a30f8f8cSSatish Balay info->nz_used = isend[0]; 1683a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1684a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1685a30f8f8cSSatish Balay info->memory = isend[3]; 1686a30f8f8cSSatish Balay info->mallocs = isend[4]; 1687a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 16883966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 168926fbe8dcSKarl Rupp 1690a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1691a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1692a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1693a30f8f8cSSatish Balay info->memory = irecv[3]; 1694a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1695a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 16963966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 169726fbe8dcSKarl Rupp 1698a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1699a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1700a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1701a30f8f8cSSatish Balay info->memory = irecv[3]; 1702a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1703f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1704a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1705a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1706a30f8f8cSSatish Balay info->factor_mallocs = 0; 1707a30f8f8cSSatish Balay PetscFunctionReturn(0); 1708a30f8f8cSSatish Balay } 1709a30f8f8cSSatish Balay 1710ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1711a30f8f8cSSatish Balay { 1712a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1713d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1714dfbe8321SBarry Smith PetscErrorCode ierr; 1715a30f8f8cSSatish Balay 1716a30f8f8cSSatish Balay PetscFunctionBegin; 1717e98b92d7SKris Buschelman switch (op) { 1718512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1719e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 172028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1721a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1722c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1723e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 172443674050SBarry Smith MatCheckPreallocated(A,1); 17254e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 17264e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1727e98b92d7SKris Buschelman break; 1728e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 172943674050SBarry Smith MatCheckPreallocated(A,1); 17304e0d8c25SBarry Smith a->roworiented = flg; 173126fbe8dcSKarl Rupp 17324e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 17334e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1734e98b92d7SKris Buschelman break; 17354e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1736071fcb05SBarry Smith case MAT_SORTED_FULL: 1737290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1738e98b92d7SKris Buschelman break; 1739e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 17404e0d8c25SBarry Smith a->donotstash = flg; 1741e98b92d7SKris Buschelman break; 1742e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 17434e0d8c25SBarry Smith a->ht_flag = flg; 1744e98b92d7SKris Buschelman break; 17459a4540c5SBarry Smith case MAT_HERMITIAN: 174643674050SBarry Smith MatCheckPreallocated(A,1); 1747eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 17480f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1749*eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1750547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1751*eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1752*eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1753*eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1754*eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 1755*eb1ec7c1SStefano Zampini } 17560f2140c7SStefano Zampini #endif 1757eeffb40dSHong Zhang break; 1758ffa07934SHong Zhang case MAT_SPD: 175977e54ba9SKris Buschelman case MAT_SYMMETRIC: 176043674050SBarry Smith MatCheckPreallocated(A,1); 1761eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1762*eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1763*eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1764*eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1765*eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1766*eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1767*eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1768*eb1ec7c1SStefano Zampini } 1769*eb1ec7c1SStefano Zampini #endif 1770eeffb40dSHong Zhang break; 177177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 177243674050SBarry Smith MatCheckPreallocated(A,1); 1773eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1774eeffb40dSHong Zhang break; 17759a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1776e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1777290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 177877e54ba9SKris Buschelman break; 1779d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 17804e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1781d0d4cfc2SHong Zhang break; 1782d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 17834e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1784d0d4cfc2SHong Zhang break; 1785d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 17864e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1787d0d4cfc2SHong Zhang break; 1788e98b92d7SKris Buschelman default: 1789e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1790a30f8f8cSSatish Balay } 1791a30f8f8cSSatish Balay PetscFunctionReturn(0); 1792a30f8f8cSSatish Balay } 1793a30f8f8cSSatish Balay 1794fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1795a30f8f8cSSatish Balay { 1796dfbe8321SBarry Smith PetscErrorCode ierr; 17976e111a19SKarl Rupp 1798a30f8f8cSSatish Balay PetscFunctionBegin; 1799cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1800999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1801cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 1802cf37664fSBarry Smith ierr = MatCopy(A,*B,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1803fc4dec0aSBarry Smith } 18048115998fSBarry Smith PetscFunctionReturn(0); 1805a30f8f8cSSatish Balay } 1806a30f8f8cSSatish Balay 1807dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1808a30f8f8cSSatish Balay { 1809a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1810a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1811dfbe8321SBarry Smith PetscErrorCode ierr; 18125e90f9d9SHong Zhang PetscInt nv,m,n; 1813ace3abfcSBarry Smith PetscBool flg; 1814a30f8f8cSSatish Balay 1815a30f8f8cSSatish Balay PetscFunctionBegin; 1816a30f8f8cSSatish Balay if (ll != rr) { 1817b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1818e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1819a30f8f8cSSatish Balay } 1820b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1821b3bf805bSHong Zhang 18225e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1823e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1824b3bf805bSHong Zhang 18255e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1826e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 18275e90f9d9SHong Zhang 1828ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18295e90f9d9SHong Zhang 18305e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 18310298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 18325e90f9d9SHong Zhang 18335e90f9d9SHong Zhang /* scale the diagonal part */ 1834a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1835a30f8f8cSSatish Balay 18365e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1837ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18380298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1839a30f8f8cSSatish Balay PetscFunctionReturn(0); 1840a30f8f8cSSatish Balay } 1841a30f8f8cSSatish Balay 1842dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1843a30f8f8cSSatish Balay { 1844f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1845dfbe8321SBarry Smith PetscErrorCode ierr; 1846a30f8f8cSSatish Balay 1847a30f8f8cSSatish Balay PetscFunctionBegin; 1848a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1849a30f8f8cSSatish Balay PetscFunctionReturn(0); 1850a30f8f8cSSatish Balay } 1851a30f8f8cSSatish Balay 18526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1853a30f8f8cSSatish Balay 1854ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1855a30f8f8cSSatish Balay { 1856a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1857a30f8f8cSSatish Balay Mat a,b,c,d; 1858ace3abfcSBarry Smith PetscBool flg; 1859dfbe8321SBarry Smith PetscErrorCode ierr; 1860a30f8f8cSSatish Balay 1861a30f8f8cSSatish Balay PetscFunctionBegin; 1862a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1863a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1864a30f8f8cSSatish Balay 1865a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1866abc0a331SBarry Smith if (flg) { 1867a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1868a30f8f8cSSatish Balay } 1869b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1870a30f8f8cSSatish Balay PetscFunctionReturn(0); 1871a30f8f8cSSatish Balay } 1872a30f8f8cSSatish Balay 18733c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 18743c896bc6SHong Zhang { 18753c896bc6SHong Zhang PetscErrorCode ierr; 18764c7a3774SStefano Zampini PetscBool isbaij; 18773c896bc6SHong Zhang 18783c896bc6SHong Zhang PetscFunctionBegin; 18794c7a3774SStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"");CHKERRQ(ierr); 18804c7a3774SStefano Zampini if (!isbaij) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 18813c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18823c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1883d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 18843c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1885d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 18863c896bc6SHong Zhang } else { 18874c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 18884c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 18894c7a3774SStefano Zampini 18903c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18913c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18923c896bc6SHong Zhang } 1893cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 18943c896bc6SHong Zhang PetscFunctionReturn(0); 18953c896bc6SHong Zhang } 18963c896bc6SHong Zhang 18974994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1898273d9f13SBarry Smith { 1899dfbe8321SBarry Smith PetscErrorCode ierr; 1900273d9f13SBarry Smith 1901273d9f13SBarry Smith PetscFunctionBegin; 1902535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1903273d9f13SBarry Smith PetscFunctionReturn(0); 1904273d9f13SBarry Smith } 1905a5e6ed63SBarry Smith 19064fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19074fe895cdSHong Zhang { 19084fe895cdSHong Zhang PetscErrorCode ierr; 19094fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 19104fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19114fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 19124fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 19134fe895cdSHong Zhang 19144fe895cdSHong Zhang PetscFunctionBegin; 19154fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19164fe895cdSHong Zhang PetscScalar alpha = a; 19174fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 19184fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1919c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 19208b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 19214fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 19224fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1923c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 19248b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 1925a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1926ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1927ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1928ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1929ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 19304fe895cdSHong Zhang } else { 19314de5dceeSHong Zhang Mat B; 19324de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 19334de5dceeSHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1934d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 19354de5dceeSHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 19364de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 19374de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 19384de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 19394de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 19404de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 19414de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 19424de5dceeSHong Zhang ierr = MatSetType(B,MATMPISBAIJ);CHKERRQ(ierr); 19434de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 19444de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 19454de5dceeSHong Zhang ierr = MatMPISBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 19464de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 194728be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 19484de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 19494de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 1950d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 19514de5dceeSHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 19524fe895cdSHong Zhang } 19534fe895cdSHong Zhang PetscFunctionReturn(0); 19544fe895cdSHong Zhang } 19554fe895cdSHong Zhang 19567dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1957a5e6ed63SBarry Smith { 19586849ba73SBarry Smith PetscErrorCode ierr; 19591302d50aSBarry Smith PetscInt i; 1960afebec48SHong Zhang PetscBool flg; 1961a5e6ed63SBarry Smith 19626849ba73SBarry Smith PetscFunctionBegin; 19637dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); /* B[] are sbaij matrices */ 1964a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1965a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1966afebec48SHong Zhang if (!flg) { 1967b2fa50c1SHong Zhang ierr = MatSeqSBAIJZeroOps_Private(*B[i]);CHKERRQ(ierr); 1968a5e6ed63SBarry Smith } 19694dcd73b1SHong Zhang } 1970a5e6ed63SBarry Smith PetscFunctionReturn(0); 1971a5e6ed63SBarry Smith } 1972a5e6ed63SBarry Smith 19737d68702bSBarry Smith PetscErrorCode MatShift_MPISBAIJ(Mat Y,PetscScalar a) 19747d68702bSBarry Smith { 19757d68702bSBarry Smith PetscErrorCode ierr; 19767d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ*)Y->data; 19776f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)maij->A->data; 19787d68702bSBarry Smith 19797d68702bSBarry Smith PetscFunctionBegin; 19806f33a894SBarry Smith if (!Y->preallocated) { 19817d68702bSBarry Smith ierr = MatMPISBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 19826f33a894SBarry Smith } else if (!aij->nz) { 1983b83222d8SBarry Smith PetscInt nonew = aij->nonew; 19846f33a894SBarry Smith ierr = MatSeqSBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 1985b83222d8SBarry Smith aij->nonew = nonew; 19867d68702bSBarry Smith } 19877d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 19887d68702bSBarry Smith PetscFunctionReturn(0); 19897d68702bSBarry Smith } 19907d68702bSBarry Smith 19913b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A,PetscBool *missing,PetscInt *d) 19923b49f96aSBarry Smith { 19933b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 19943b49f96aSBarry Smith PetscErrorCode ierr; 19953b49f96aSBarry Smith 19963b49f96aSBarry Smith PetscFunctionBegin; 19973b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 19983b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 19993b49f96aSBarry Smith if (d) { 20003b49f96aSBarry Smith PetscInt rstart; 20013b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 20023b49f96aSBarry Smith *d += rstart/A->rmap->bs; 20033b49f96aSBarry Smith 20043b49f96aSBarry Smith } 20053b49f96aSBarry Smith PetscFunctionReturn(0); 20063b49f96aSBarry Smith } 20073b49f96aSBarry Smith 2008a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 2009a5b7ff6bSBarry Smith { 2010a5b7ff6bSBarry Smith PetscFunctionBegin; 2011a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ*)A->data)->A; 2012a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2013a5b7ff6bSBarry Smith } 20143b49f96aSBarry Smith 2015a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 20163964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 2017a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 2018a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 2019a9d4b620SHong Zhang MatMult_MPISBAIJ, 202097304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 2021431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 2022431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 2023a30f8f8cSSatish Balay 0, 2024a30f8f8cSSatish Balay 0, 2025a30f8f8cSSatish Balay 0, 202697304618SKris Buschelman /* 10*/ 0, 2027a30f8f8cSSatish Balay 0, 2028a30f8f8cSSatish Balay 0, 202941f059aeSBarry Smith MatSOR_MPISBAIJ, 2030a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 203197304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 2032a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 2033a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 2034a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 2035a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 203697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 2037a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 2038a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 2039a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 2040d519adbfSMatthew Knepley /* 24*/ 0, 2041a30f8f8cSSatish Balay 0, 2042a30f8f8cSSatish Balay 0, 2043a30f8f8cSSatish Balay 0, 2044a30f8f8cSSatish Balay 0, 20454994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 2046b5df2d14SHong Zhang 0, 2047a30f8f8cSSatish Balay 0, 2048a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 2049a30f8f8cSSatish Balay 0, 2050d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 2051a30f8f8cSSatish Balay 0, 2052a30f8f8cSSatish Balay 0, 2053a30f8f8cSSatish Balay 0, 2054a30f8f8cSSatish Balay 0, 2055d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 20567dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 2057d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 2058a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 20593c896bc6SHong Zhang MatCopy_MPISBAIJ, 2060d519adbfSMatthew Knepley /* 44*/ 0, 2061a30f8f8cSSatish Balay MatScale_MPISBAIJ, 20627d68702bSBarry Smith MatShift_MPISBAIJ, 2063a30f8f8cSSatish Balay 0, 2064a30f8f8cSSatish Balay 0, 2065f73d5cc4SBarry Smith /* 49*/ 0, 2066a30f8f8cSSatish Balay 0, 2067a30f8f8cSSatish Balay 0, 2068a30f8f8cSSatish Balay 0, 2069a30f8f8cSSatish Balay 0, 2070d519adbfSMatthew Knepley /* 54*/ 0, 2071a30f8f8cSSatish Balay 0, 2072a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 2073a30f8f8cSSatish Balay 0, 2074a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 20757dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 2076a30f8f8cSSatish Balay 0, 2077a30f8f8cSSatish Balay 0, 2078357abbc8SBarry Smith 0, 207924d5174aSHong Zhang 0, 2080d519adbfSMatthew Knepley /* 64*/ 0, 208124d5174aSHong Zhang 0, 208224d5174aSHong Zhang 0, 208324d5174aSHong Zhang 0, 208424d5174aSHong Zhang 0, 2085d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 208624d5174aSHong Zhang 0, 208728d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 208897304618SKris Buschelman 0, 208997304618SKris Buschelman 0, 2090d519adbfSMatthew Knepley /* 74*/ 0, 209197304618SKris Buschelman 0, 209297304618SKris Buschelman 0, 209397304618SKris Buschelman 0, 209497304618SKris Buschelman 0, 2095d519adbfSMatthew Knepley /* 79*/ 0, 209697304618SKris Buschelman 0, 209797304618SKris Buschelman 0, 209897304618SKris Buschelman 0, 20995bba2384SShri Abhyankar MatLoad_MPISBAIJ, 2100d519adbfSMatthew Knepley /* 84*/ 0, 2101865e5f61SKris Buschelman 0, 2102865e5f61SKris Buschelman 0, 2103865e5f61SKris Buschelman 0, 2104865e5f61SKris Buschelman 0, 2105d519adbfSMatthew Knepley /* 89*/ 0, 2106865e5f61SKris Buschelman 0, 2107865e5f61SKris Buschelman 0, 2108865e5f61SKris Buschelman 0, 2109865e5f61SKris Buschelman 0, 2110d519adbfSMatthew Knepley /* 94*/ 0, 2111865e5f61SKris Buschelman 0, 2112865e5f61SKris Buschelman 0, 211399cafbc1SBarry Smith 0, 211499cafbc1SBarry Smith 0, 2115d519adbfSMatthew Knepley /* 99*/ 0, 211699cafbc1SBarry Smith 0, 211799cafbc1SBarry Smith 0, 211899cafbc1SBarry Smith 0, 211999cafbc1SBarry Smith 0, 2120d519adbfSMatthew Knepley /*104*/ 0, 212199cafbc1SBarry Smith MatRealPart_MPISBAIJ, 2122d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 2123d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 212495936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 212595936485SShri Abhyankar /*109*/ 0, 212695936485SShri Abhyankar 0, 212795936485SShri Abhyankar 0, 212895936485SShri Abhyankar 0, 21293b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 213095936485SShri Abhyankar /*114*/ 0, 213195936485SShri Abhyankar 0, 213295936485SShri Abhyankar 0, 213395936485SShri Abhyankar 0, 213495936485SShri Abhyankar 0, 213595936485SShri Abhyankar /*119*/ 0, 213695936485SShri Abhyankar 0, 213795936485SShri Abhyankar 0, 21383964eb88SJed Brown 0, 21393964eb88SJed Brown 0, 21403964eb88SJed Brown /*124*/ 0, 21413964eb88SJed Brown 0, 21423964eb88SJed Brown 0, 21433964eb88SJed Brown 0, 21443964eb88SJed Brown 0, 21453964eb88SJed Brown /*129*/ 0, 21463964eb88SJed Brown 0, 21473964eb88SJed Brown 0, 21483964eb88SJed Brown 0, 21493964eb88SJed Brown 0, 21503964eb88SJed Brown /*134*/ 0, 21513964eb88SJed Brown 0, 21523964eb88SJed Brown 0, 21533964eb88SJed Brown 0, 21543964eb88SJed Brown 0, 215546533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2156f9426fe0SMark Adams 0, 215759f5e6ceSHong Zhang 0, 215859f5e6ceSHong Zhang 0, 215959f5e6ceSHong Zhang 0, 216059f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPISBAIJ 216199cafbc1SBarry Smith }; 2162a30f8f8cSSatish Balay 2163b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2164a23d5eceSKris Buschelman { 2165476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 2166dfbe8321SBarry Smith PetscErrorCode ierr; 2167535b19f3SBarry Smith PetscInt i,mbs,Mbs; 21685d2a9ed1SStefano Zampini PetscMPIInt size; 2169a23d5eceSKris Buschelman 2170a23d5eceSKris Buschelman PetscFunctionBegin; 217133d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 217226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 217326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2174e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2175476417e5SBarry Smith if (B->rmap->N > B->cmap->N) SETERRQ2(PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more rows %D than columns %D",B->rmap->N,B->cmap->N); 2176476417e5SBarry Smith if (B->rmap->n > B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"MPISBAIJ matrix cannot have more local rows %D than columns %D",B->rmap->n,B->cmap->n); 2177899cda47SBarry Smith 2178d0f46423SBarry Smith mbs = B->rmap->n/bs; 2179d0f46423SBarry Smith Mbs = B->rmap->N/bs; 2180c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 2181a23d5eceSKris Buschelman 2182d0f46423SBarry Smith B->rmap->bs = bs; 2183a23d5eceSKris Buschelman b->bs2 = bs*bs; 2184a23d5eceSKris Buschelman b->mbs = mbs; 2185a23d5eceSKris Buschelman b->Mbs = Mbs; 2186de64b629SHong Zhang b->nbs = B->cmap->n/bs; 2187de64b629SHong Zhang b->Nbs = B->cmap->N/bs; 2188a23d5eceSKris Buschelman 2189a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2190d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2191a23d5eceSKris Buschelman } 2192d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2193d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2194a23d5eceSKris Buschelman 2195d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2196d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2197a23d5eceSKris Buschelman 2198cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2199cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2200cb7b82ddSBarry Smith #else 2201cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2202cb7b82ddSBarry Smith #endif 2203cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2204cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2205cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2206cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0);CHKERRQ(ierr); 2207cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec0b);CHKERRQ(ierr); 2208cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1);CHKERRQ(ierr); 2209cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1a);CHKERRQ(ierr); 2210cb7b82ddSBarry Smith ierr = VecDestroy(&b->slvec1b);CHKERRQ(ierr); 2211cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->sMvctx);CHKERRQ(ierr); 2212cb7b82ddSBarry Smith 2213cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 22145d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2215cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2216cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 22175d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2218cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2219cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2220cb7b82ddSBarry Smith 2221526dfc15SBarry Smith if (!B->preallocated) { 2222f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2223d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 22249c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 22253bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2226ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2227526dfc15SBarry Smith } 2228a23d5eceSKris Buschelman 2229526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2230526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 223126fbe8dcSKarl Rupp 2232526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2233cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2234cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2235a23d5eceSKris Buschelman PetscFunctionReturn(0); 2236a23d5eceSKris Buschelman } 2237a23d5eceSKris Buschelman 2238dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2239dfb205c3SBarry Smith { 224002106b30SBarry Smith PetscInt m,rstart,cend; 22410cd7f59aSBarry Smith PetscInt i,j,d,nz,bd, nz_max=0,*d_nnz=0,*o_nnz=0; 2242dfb205c3SBarry Smith const PetscInt *JJ =0; 2243dfb205c3SBarry Smith PetscScalar *values=0; 2244bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ*)B->data)->roworiented; 2245dfb205c3SBarry Smith PetscErrorCode ierr; 22463bd0feecSPierre Jolivet PetscBool nooffprocentries; 2247dfb205c3SBarry Smith 2248dfb205c3SBarry Smith PetscFunctionBegin; 2249ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2250dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2251dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2252dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2253dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2254e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2255dfb205c3SBarry Smith m = B->rmap->n/bs; 2256dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 2257dfb205c3SBarry Smith cend = B->cmap->rend/bs; 2258dfb205c3SBarry Smith 2259dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2260dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2261dfb205c3SBarry Smith for (i=0; i<m; i++) { 2262dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 2263dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 22640cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2265dfb205c3SBarry Smith JJ = jj + ii[i]; 22660cd7f59aSBarry Smith bd = 0; 2267dfb205c3SBarry Smith for (j=0; j<nz; j++) { 22680cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2269dfb205c3SBarry Smith JJ++; 22700cd7f59aSBarry Smith bd++; 2271dfb205c3SBarry Smith } 2272dfb205c3SBarry Smith d = 0; 2273dfb205c3SBarry Smith for (; j<nz; j++) { 2274dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2275dfb205c3SBarry Smith d++; 2276dfb205c3SBarry Smith } 2277dfb205c3SBarry Smith d_nnz[i] = d; 22780cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 22790cd7f59aSBarry Smith nz = nz - bd; 22800cd7f59aSBarry Smith nz_max = PetscMax(nz_max,nz); 2281dfb205c3SBarry Smith } 2282dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2283bb80cfbbSStefano Zampini ierr = MatSetOption(B,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 2284dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2285dfb205c3SBarry Smith 2286dfb205c3SBarry Smith values = (PetscScalar*)V; 2287dfb205c3SBarry Smith if (!values) { 2288580bdb30SBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2289dfb205c3SBarry Smith } 2290dfb205c3SBarry Smith for (i=0; i<m; i++) { 2291dfb205c3SBarry Smith PetscInt row = i + rstart; 2292dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2293dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2294bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2295dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2296dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2297bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2298bb80cfbbSStefano Zampini PetscInt j; 22990cd7f59aSBarry Smith for (j=0; j<ncols; j++) { 23000cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 23010cd7f59aSBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 23020cd7f59aSBarry Smith } 23030cd7f59aSBarry Smith } 2304dfb205c3SBarry Smith } 2305dfb205c3SBarry Smith 2306dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 23073bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 23083bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2309dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2310dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23113bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 23123bd0feecSPierre Jolivet 23137827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2314dfb205c3SBarry Smith PetscFunctionReturn(0); 2315dfb205c3SBarry Smith } 2316dfb205c3SBarry Smith 23170bad9183SKris Buschelman /*MC 2318fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2319828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2320828413b8SBarry Smith the matrix is stored. 2321828413b8SBarry Smith 2322828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 2323828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 23240bad9183SKris Buschelman 23250bad9183SKris Buschelman Options Database Keys: 23260bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 23270bad9183SKris Buschelman 2328476417e5SBarry Smith Notes: 2329476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2330476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2331476417e5SBarry Smith 23320bad9183SKris Buschelman Level: beginner 23330bad9183SKris Buschelman 2334476417e5SBarry Smith .seealso: MatCreateMPISBAIJ(), MATSEQSBAIJ, MatType 23350bad9183SKris Buschelman M*/ 23360bad9183SKris Buschelman 23378cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2338b5df2d14SHong Zhang { 2339b5df2d14SHong Zhang Mat_MPISBAIJ *b; 2340dfbe8321SBarry Smith PetscErrorCode ierr; 234194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2342b5df2d14SHong Zhang 2343b5df2d14SHong Zhang PetscFunctionBegin; 2344b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2345b0a32e0cSBarry Smith B->data = (void*)b; 2346b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2347b5df2d14SHong Zhang 2348b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2349b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2350b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2351b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 235226fbe8dcSKarl Rupp 2353ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2354ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2355b5df2d14SHong Zhang 2356b5df2d14SHong Zhang /* build local table of row and column ownerships */ 2357854ce69bSBarry Smith ierr = PetscMalloc1(b->size+2,&b->rangebs);CHKERRQ(ierr); 2358b5df2d14SHong Zhang 2359b5df2d14SHong Zhang /* build cache for off array entries formed */ 2360ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 236126fbe8dcSKarl Rupp 2362b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 23630298fd71SBarry Smith b->colmap = NULL; 23640298fd71SBarry Smith b->garray = NULL; 2365b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2366b5df2d14SHong Zhang 2367b5df2d14SHong Zhang /* stuff used in block assembly */ 2368b5df2d14SHong Zhang b->barray = 0; 2369b5df2d14SHong Zhang 2370b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2371b5df2d14SHong Zhang b->lvec = 0; 2372b5df2d14SHong Zhang b->Mvctx = 0; 237340781036SHong Zhang b->slvec0 = 0; 237440781036SHong Zhang b->slvec0b = 0; 237540781036SHong Zhang b->slvec1 = 0; 237640781036SHong Zhang b->slvec1a = 0; 237740781036SHong Zhang b->slvec1b = 0; 237840781036SHong Zhang b->sMvctx = 0; 2379b5df2d14SHong Zhang 2380b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2381b5df2d14SHong Zhang b->rowindices = 0; 2382b5df2d14SHong Zhang b->rowvalues = 0; 2383b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2384b5df2d14SHong Zhang 2385b5df2d14SHong Zhang /* hash table stuff */ 2386b5df2d14SHong Zhang b->ht = 0; 2387b5df2d14SHong Zhang b->hd = 0; 2388b5df2d14SHong Zhang b->ht_size = 0; 2389b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2390b5df2d14SHong Zhang b->ht_fact = 0; 2391b5df2d14SHong Zhang b->ht_total_ct = 0; 2392b5df2d14SHong Zhang b->ht_insert_ct = 0; 2393b5df2d14SHong Zhang 23947dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 23957a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 23967a868f3eSHong Zhang 239759ffdab8SBarry Smith b->in_loc = 0; 239859ffdab8SBarry Smith b->v_loc = 0; 239959ffdab8SBarry Smith b->n_loc = 0; 240094ae4db5SBarry Smith 2401bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 2402bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 2403bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 2404bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 24056214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 24066214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_elemental_C",MatConvert_MPISBAIJ_Elemental);CHKERRQ(ierr); 24076214f412SHong Zhang #endif 240828d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpiaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 240928d58a37SPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpibaij_C",MatConvert_MPISBAIJ_Basic);CHKERRQ(ierr); 2410aa5a9175SDahai Guo 241123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 241223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 241323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 241423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 24159899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 2416*eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 241713647f61SHong Zhang B->hermitian = PETSC_FALSE; 241813647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 2419*eb1ec7c1SStefano Zampini #else 2420*eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2421*eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2422*eb1ec7c1SStefano Zampini #endif 242313647f61SHong Zhang 242417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 242594ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 242694ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 242794ae4db5SBarry Smith if (flg) { 242894ae4db5SBarry Smith PetscReal fact = 1.39; 242994ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 243094ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 243194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 243294ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 243394ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 243494ae4db5SBarry Smith } 243594ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2436b5df2d14SHong Zhang PetscFunctionReturn(0); 2437b5df2d14SHong Zhang } 2438b5df2d14SHong Zhang 2439209238afSKris Buschelman /*MC 2440002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2441209238afSKris Buschelman 2442209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 2443209238afSKris Buschelman and MATMPISBAIJ otherwise. 2444209238afSKris Buschelman 2445209238afSKris Buschelman Options Database Keys: 2446209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 2447209238afSKris Buschelman 2448209238afSKris Buschelman Level: beginner 2449209238afSKris Buschelman 2450209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 2451209238afSKris Buschelman M*/ 2452209238afSKris Buschelman 2453b5df2d14SHong Zhang /*@C 2454b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2455b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2456b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2457b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2458b5df2d14SHong Zhang 2459b5df2d14SHong Zhang Collective on Mat 2460b5df2d14SHong Zhang 2461b5df2d14SHong Zhang Input Parameters: 24621c4f3114SJed Brown + B - the matrix 2463bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2464bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2465b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2466b5df2d14SHong Zhang submatrix (same for all local rows) 2467b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 24686d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 24690298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 247095742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2471b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2472b5df2d14SHong Zhang submatrix (same for all local rows). 2473b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2474c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 24750298fd71SBarry Smith (possibly different for each block row) or NULL. 2476b5df2d14SHong Zhang 2477b5df2d14SHong Zhang 2478b5df2d14SHong Zhang Options Database Keys: 2479a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2480b5df2d14SHong Zhang block calculations (much slower) 2481a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2482b5df2d14SHong Zhang 2483b5df2d14SHong Zhang Notes: 2484b5df2d14SHong Zhang 2485b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2486b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2487b5df2d14SHong Zhang 248849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 248949a6f317SBarry Smith 2490b5df2d14SHong Zhang Storage Information: 2491b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2492b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2493b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2494b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2495b5df2d14SHong Zhang 2496b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 2497b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 24980298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2499b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 2500b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2501b5df2d14SHong Zhang 2502aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2503aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2504aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2505aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2506aa95bbe8SBarry Smith 2507b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2508b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2509b5df2d14SHong Zhang 2510b5df2d14SHong Zhang .vb 2511b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2512a4b1a0f6SJed Brown -------------------------- 2513c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2514c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2515c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2516a4b1a0f6SJed Brown -------------------------- 2517b5df2d14SHong Zhang .ve 2518b5df2d14SHong Zhang 2519b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2520b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 25216d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 25226d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2523b5df2d14SHong Zhang 25246d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 25256d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2526c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 2527c2fc9fa9SBarry Smith 2528b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 2529b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2530b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 2531b5df2d14SHong Zhang matrices. 2532b5df2d14SHong Zhang 2533b5df2d14SHong Zhang Level: intermediate 2534b5df2d14SHong Zhang 2535ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 2536b5df2d14SHong Zhang @*/ 25377087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2538b5df2d14SHong Zhang { 25394ac538c5SBarry Smith PetscErrorCode ierr; 2540b5df2d14SHong Zhang 2541b5df2d14SHong Zhang PetscFunctionBegin; 25426ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 25436ba663aaSJed Brown PetscValidType(B,1); 25446ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 25454ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 2546b5df2d14SHong Zhang PetscFunctionReturn(0); 2547b5df2d14SHong Zhang } 2548b5df2d14SHong Zhang 2549a30f8f8cSSatish Balay /*@C 255069b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 2551a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2552a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 2553a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2554a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 2555a30f8f8cSSatish Balay 2556d083f849SBarry Smith Collective 2557a30f8f8cSSatish Balay 2558a30f8f8cSSatish Balay Input Parameters: 2559a30f8f8cSSatish Balay + comm - MPI communicator 2560bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2561bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2562a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2563a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2564a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 2565a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2566a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2567a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 2568a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2569a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2570a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2571a30f8f8cSSatish Balay submatrix (same for all local rows) 2572a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 25736d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 25740298fd71SBarry Smith (possibly different for each block block row) or NULL. 257595742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 257695742e49SBarry Smith set its value even if it is zero. 2577a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2578a30f8f8cSSatish Balay submatrix (same for all local rows). 2579a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2580a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 25810298fd71SBarry Smith each block row) or NULL. 2582a30f8f8cSSatish Balay 2583a30f8f8cSSatish Balay Output Parameter: 2584a30f8f8cSSatish Balay . A - the matrix 2585a30f8f8cSSatish Balay 2586a30f8f8cSSatish Balay Options Database Keys: 2587a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2588a30f8f8cSSatish Balay block calculations (much slower) 2589a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2590a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2591a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2592a30f8f8cSSatish Balay 2593175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2594f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2595175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2596175b88e8SBarry Smith 2597a30f8f8cSSatish Balay Notes: 2598d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 25996d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2600d1be2dadSMatthew Knepley 2601a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2602a30f8f8cSSatish Balay (possibly both). 2603a30f8f8cSSatish Balay 2604a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2605a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2606a30f8f8cSSatish Balay 260749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 260849a6f317SBarry Smith 2609a30f8f8cSSatish Balay Storage Information: 2610a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2611a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2612a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2613a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2614a30f8f8cSSatish Balay 2615a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2616a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 26170298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2618a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2619a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2620a30f8f8cSSatish Balay 2621a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2622a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2623a30f8f8cSSatish Balay 2624a30f8f8cSSatish Balay .vb 2625a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2626a4b1a0f6SJed Brown -------------------------- 2627c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2628c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2629c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2630a4b1a0f6SJed Brown -------------------------- 2631a30f8f8cSSatish Balay .ve 2632a30f8f8cSSatish Balay 2633a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2634a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 26356d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 26366d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2637a30f8f8cSSatish Balay 26386d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 26396d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2640a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2641a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2642a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2643a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2644a30f8f8cSSatish Balay matrices. 2645a30f8f8cSSatish Balay 2646a30f8f8cSSatish Balay Level: intermediate 2647a30f8f8cSSatish Balay 264869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2649a30f8f8cSSatish Balay @*/ 2650a30f8f8cSSatish Balay 265169b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2652a30f8f8cSSatish Balay { 26536849ba73SBarry Smith PetscErrorCode ierr; 26541302d50aSBarry Smith PetscMPIInt size; 2655a30f8f8cSSatish Balay 2656a30f8f8cSSatish Balay PetscFunctionBegin; 2657f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2658f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2659273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2660273d9f13SBarry Smith if (size > 1) { 2661b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2662b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2663273d9f13SBarry Smith } else { 2664273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2665273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2666273d9f13SBarry Smith } 2667a30f8f8cSSatish Balay PetscFunctionReturn(0); 2668a30f8f8cSSatish Balay } 2669a30f8f8cSSatish Balay 2670a30f8f8cSSatish Balay 26716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2672a30f8f8cSSatish Balay { 2673a30f8f8cSSatish Balay Mat mat; 2674a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2675dfbe8321SBarry Smith PetscErrorCode ierr; 2676d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2677387bc808SHong Zhang PetscScalar *array; 2678a30f8f8cSSatish Balay 2679a30f8f8cSSatish Balay PetscFunctionBegin; 2680a30f8f8cSSatish Balay *newmat = 0; 268126fbe8dcSKarl Rupp 2682ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2683d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 26847adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 26851e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 26861e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2687e1b6402fSHong Zhang 2688d5f3da31SBarry Smith mat->factortype = matin->factortype; 2689273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 269082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 26917fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26927fff6886SHong Zhang 2693b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2694a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2695a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2696a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2697a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2698a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2699a30f8f8cSSatish Balay 2700a30f8f8cSSatish Balay a->size = oldmat->size; 2701a30f8f8cSSatish Balay a->rank = oldmat->rank; 2702a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2703a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2704a30f8f8cSSatish Balay a->rowindices = 0; 2705a30f8f8cSSatish Balay a->rowvalues = 0; 2706a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2707a30f8f8cSSatish Balay a->barray = 0; 2708899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2709899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2710899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2711899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2712a30f8f8cSSatish Balay 2713a30f8f8cSSatish Balay /* hash table stuff */ 2714a30f8f8cSSatish Balay a->ht = 0; 2715a30f8f8cSSatish Balay a->hd = 0; 2716a30f8f8cSSatish Balay a->ht_size = 0; 2717a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2718a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2719a30f8f8cSSatish Balay a->ht_total_ct = 0; 2720a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2721a30f8f8cSSatish Balay 2722580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+2);CHKERRQ(ierr); 2723a30f8f8cSSatish Balay if (oldmat->colmap) { 2724a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2725a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2726a30f8f8cSSatish Balay #else 2727854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 27283bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2729580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 2730a30f8f8cSSatish Balay #endif 2731a30f8f8cSSatish Balay } else a->colmap = 0; 2732387bc808SHong Zhang 2733a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2734785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 27353bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2736580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 2737a30f8f8cSSatish Balay } else a->garray = 0; 2738a30f8f8cSSatish Balay 2739ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2740a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 27413bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2742a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 27433bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 274482327fa8SHong Zhang 274582327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 27463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 274782327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 27483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2749387bc808SHong Zhang 2750387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 27511ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2752778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2753778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 27541ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 27551ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2756778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 27571ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 27583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 27593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 27603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 27613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 27623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2763387bc808SHong Zhang 2764387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2765387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2766387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 27673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 276882327fa8SHong Zhang 2769a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 27703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2771a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 27723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2773140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2774a30f8f8cSSatish Balay *newmat = mat; 2775a30f8f8cSSatish Balay PetscFunctionReturn(0); 2776a30f8f8cSSatish Balay } 2777a30f8f8cSSatish Balay 2778112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 277995936485SShri Abhyankar { 278095936485SShri Abhyankar PetscErrorCode ierr; 278195936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 278295936485SShri Abhyankar PetscScalar *vals,*buf; 2783ce94432eSBarry Smith MPI_Comm comm; 278495936485SShri Abhyankar MPI_Status status; 2785adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2786adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 278795936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 27883059b6faSBarry Smith PetscInt bs = newmat->rmap->bs,Mbs,mbs,extra_rows; 278995936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2790461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 279195936485SShri Abhyankar int fd; 27927f489da9SVaclav Hapla PetscBool isbinary; 279395936485SShri Abhyankar 279495936485SShri Abhyankar PetscFunctionBegin; 27957f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 27967f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 27977f489da9SVaclav Hapla 2798c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2799c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2800ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 28010298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 28020298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 280395936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 28043059b6faSBarry Smith if (bs < 0) bs = 1; 280595936485SShri Abhyankar 280695936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 280795936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 280895936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 28095872f025SBarry Smith if (!rank) { 28109860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr); 281195936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 281202f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 281395936485SShri Abhyankar } 281495936485SShri Abhyankar 281595936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 281626fbe8dcSKarl Rupp M = header[1]; 281726fbe8dcSKarl Rupp N = header[2]; 281895936485SShri Abhyankar 281995936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 2820461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 2821461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 282295936485SShri Abhyankar 282395936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 282495936485SShri Abhyankar 282595936485SShri Abhyankar /* 282695936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 282795936485SShri Abhyankar divisible by the blocksize 282895936485SShri Abhyankar */ 282995936485SShri Abhyankar Mbs = M/bs; 283095936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 283195936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 283295936485SShri Abhyankar else Mbs++; 283395936485SShri Abhyankar if (extra_rows &&!rank) { 283495936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 283595936485SShri Abhyankar } 283695936485SShri Abhyankar 283795936485SShri Abhyankar /* determine ownership of all rows */ 283895936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 283995936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 284095936485SShri Abhyankar m = mbs*bs; 284195936485SShri Abhyankar } else { /* User Set */ 284295936485SShri Abhyankar m = newmat->rmap->n; 284395936485SShri Abhyankar mbs = m/bs; 284495936485SShri Abhyankar } 2845dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 28464dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 284795936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 284895936485SShri Abhyankar rowners[0] = 0; 284995936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 285095936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 285195936485SShri Abhyankar rstart = rowners[rank]; 285295936485SShri Abhyankar rend = rowners[rank+1]; 285395936485SShri Abhyankar 285495936485SShri Abhyankar /* distribute row lengths to all processors */ 2855785e854fSJed Brown ierr = PetscMalloc1((rend-rstart)*bs,&locrowlens);CHKERRQ(ierr); 285695936485SShri Abhyankar if (!rank) { 2857854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 28589860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr); 285995936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2860785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 286195936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 286295936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 286395936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 286495936485SShri Abhyankar } else { 286595936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 286695936485SShri Abhyankar } 286795936485SShri Abhyankar 286895936485SShri Abhyankar if (!rank) { /* procs[0] */ 286995936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 2870580bdb30SBarry Smith ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 287195936485SShri Abhyankar for (i=0; i<size; i++) { 287295936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 287395936485SShri Abhyankar procsnz[i] += rowlengths[j]; 287495936485SShri Abhyankar } 287595936485SShri Abhyankar } 287695936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 287795936485SShri Abhyankar 287895936485SShri Abhyankar /* determine max buffer needed and allocate it */ 287995936485SShri Abhyankar maxnz = 0; 288095936485SShri Abhyankar for (i=0; i<size; i++) { 288195936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 288295936485SShri Abhyankar } 2883785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 288495936485SShri Abhyankar 288595936485SShri Abhyankar /* read in my part of the matrix column indices */ 288695936485SShri Abhyankar nz = procsnz[0]; 2887785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 288895936485SShri Abhyankar mycols = ibuf; 288995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 28909860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 289126fbe8dcSKarl Rupp if (size == 1) { 289226fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 289326fbe8dcSKarl Rupp } 289495936485SShri Abhyankar 289595936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 289695936485SShri Abhyankar for (i=1; i<size-1; i++) { 289795936485SShri Abhyankar nz = procsnz[i]; 28989860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 289995936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 290095936485SShri Abhyankar } 290195936485SShri Abhyankar /* read in the stuff for the last proc */ 290295936485SShri Abhyankar if (size != 1) { 290395936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 29049860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 290595936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 290695936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 290795936485SShri Abhyankar } 290895936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 290995936485SShri Abhyankar } else { /* procs[i], i>0 */ 291095936485SShri Abhyankar /* determine buffer space needed for message */ 291195936485SShri Abhyankar nz = 0; 291226fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 2913785e854fSJed Brown ierr = PetscMalloc1(nz,&ibuf);CHKERRQ(ierr); 291495936485SShri Abhyankar mycols = ibuf; 291595936485SShri Abhyankar /* receive message of column indices*/ 291695936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 291795936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 291895936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 291995936485SShri Abhyankar } 292095936485SShri Abhyankar 292195936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 2922dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 2923580bdb30SBarry Smith ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 292495936485SShri Abhyankar rowcount = 0; 292595936485SShri Abhyankar nzcount = 0; 292695936485SShri Abhyankar for (i=0; i<mbs; i++) { 292795936485SShri Abhyankar dcount = 0; 292895936485SShri Abhyankar odcount = 0; 292995936485SShri Abhyankar for (j=0; j<bs; j++) { 293095936485SShri Abhyankar kmax = locrowlens[rowcount]; 293195936485SShri Abhyankar for (k=0; k<kmax; k++) { 293295936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 293395936485SShri Abhyankar if (!mask[tmp]) { 293495936485SShri Abhyankar mask[tmp] = 1; 293595936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 293695936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 293795936485SShri Abhyankar } 293895936485SShri Abhyankar } 293995936485SShri Abhyankar rowcount++; 294095936485SShri Abhyankar } 294195936485SShri Abhyankar 294295936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 294395936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 294495936485SShri Abhyankar 294595936485SShri Abhyankar /* zero out the mask elements we set */ 294695936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 294795936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 294895936485SShri Abhyankar } 294995936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 295095936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 29516816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 295295936485SShri Abhyankar 295395936485SShri Abhyankar if (!rank) { 2954785e854fSJed Brown ierr = PetscMalloc1(maxnz,&buf);CHKERRQ(ierr); 295595936485SShri Abhyankar /* read in my part of the matrix numerical values */ 295695936485SShri Abhyankar nz = procsnz[0]; 295795936485SShri Abhyankar vals = buf; 295895936485SShri Abhyankar mycols = ibuf; 295995936485SShri Abhyankar if (size == 1) nz -= extra_rows; 29609860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 296126fbe8dcSKarl Rupp if (size == 1) { 296226fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 296326fbe8dcSKarl Rupp } 296495936485SShri Abhyankar 296595936485SShri Abhyankar /* insert into matrix */ 296695936485SShri Abhyankar jj = rstart*bs; 296795936485SShri Abhyankar for (i=0; i<m; i++) { 296895936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 296995936485SShri Abhyankar mycols += locrowlens[i]; 297095936485SShri Abhyankar vals += locrowlens[i]; 297195936485SShri Abhyankar jj++; 297295936485SShri Abhyankar } 297395936485SShri Abhyankar 297495936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 297595936485SShri Abhyankar for (i=1; i<size-1; i++) { 297695936485SShri Abhyankar nz = procsnz[i]; 297795936485SShri Abhyankar vals = buf; 29789860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 297995936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 298095936485SShri Abhyankar } 298195936485SShri Abhyankar /* the last proc */ 298295936485SShri Abhyankar if (size != 1) { 298395936485SShri Abhyankar nz = procsnz[i] - extra_rows; 298495936485SShri Abhyankar vals = buf; 29859860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 298695936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 298795936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 298895936485SShri Abhyankar } 298995936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 299095936485SShri Abhyankar 299195936485SShri Abhyankar } else { 299295936485SShri Abhyankar /* receive numeric values */ 2993785e854fSJed Brown ierr = PetscMalloc1(nz,&buf);CHKERRQ(ierr); 299495936485SShri Abhyankar 299595936485SShri Abhyankar /* receive message of values*/ 299695936485SShri Abhyankar vals = buf; 299795936485SShri Abhyankar mycols = ibuf; 299895936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 299995936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 300095936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 300195936485SShri Abhyankar 300295936485SShri Abhyankar /* insert into matrix */ 300395936485SShri Abhyankar jj = rstart*bs; 300495936485SShri Abhyankar for (i=0; i<m; i++) { 300595936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 300695936485SShri Abhyankar mycols += locrowlens[i]; 300795936485SShri Abhyankar vals += locrowlens[i]; 300895936485SShri Abhyankar jj++; 300995936485SShri Abhyankar } 301095936485SShri Abhyankar } 301195936485SShri Abhyankar 301295936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 301395936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 301495936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 301595936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 301695936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 301795936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 301895936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 301995936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 302095936485SShri Abhyankar PetscFunctionReturn(0); 302195936485SShri Abhyankar } 302295936485SShri Abhyankar 3023dcf5cc72SBarry Smith /*XXXXX@ 3024a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3025a30f8f8cSSatish Balay 3026a30f8f8cSSatish Balay Input Parameters: 3027a30f8f8cSSatish Balay . mat - the matrix 3028a30f8f8cSSatish Balay . fact - factor 3029a30f8f8cSSatish Balay 3030c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 3031a30f8f8cSSatish Balay 3032a30f8f8cSSatish Balay Level: advanced 3033a30f8f8cSSatish Balay 3034a30f8f8cSSatish Balay Notes: 3035a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 3036a30f8f8cSSatish Balay 3037a30f8f8cSSatish Balay .seealso: MatSetOption() 3038dcf5cc72SBarry Smith @XXXXX*/ 3039dcf5cc72SBarry Smith 304024d5174aSHong Zhang 3041985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 304224d5174aSHong Zhang { 304324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 3044f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 3045ca54ac64SHong Zhang PetscReal atmp; 304687828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 3047dfbe8321SBarry Smith PetscErrorCode ierr; 30481302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 30491302d50aSBarry Smith PetscMPIInt rank,size; 30501302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 305187828ca2SBarry Smith PetscScalar *va; 30528a1c53f2SBarry Smith MatScalar *ba; 3053f4c0e9e4SHong Zhang MPI_Status stat; 305424d5174aSHong Zhang 305524d5174aSHong Zhang PetscFunctionBegin; 3056e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 30570298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 30581ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 3059f4c0e9e4SHong Zhang 3060ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 3061ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 3062f4c0e9e4SHong Zhang 3063d0f46423SBarry Smith bs = A->rmap->bs; 3064f4c0e9e4SHong Zhang mbs = a->mbs; 3065f4c0e9e4SHong Zhang Mbs = a->Mbs; 3066f4c0e9e4SHong Zhang ba = b->a; 3067f4c0e9e4SHong Zhang bi = b->i; 3068f4c0e9e4SHong Zhang bj = b->j; 3069f4c0e9e4SHong Zhang 3070f4c0e9e4SHong Zhang /* find ownerships */ 3071d0f46423SBarry Smith rowners_bs = A->rmap->range; 3072f4c0e9e4SHong Zhang 3073f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 3074580bdb30SBarry Smith ierr = PetscCalloc1(bs*Mbs,&work);CHKERRQ(ierr); 3075f4c0e9e4SHong Zhang 3076f4c0e9e4SHong Zhang /* row_max for B */ 3077b8475685SHong Zhang if (rank != size-1) { 3078f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 3079f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 3080f4c0e9e4SHong Zhang brow = bs*i; 3081f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 3082f4c0e9e4SHong Zhang bcol = bs*(*bj); 3083f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 3084ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 308504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 3086f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 3087f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 3088ca54ac64SHong Zhang row = brow + krow; /* local row index */ 3089ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 3090f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 3091f4c0e9e4SHong Zhang } 3092f4c0e9e4SHong Zhang } 3093f4c0e9e4SHong Zhang bj++; 3094f4c0e9e4SHong Zhang } 3095f4c0e9e4SHong Zhang } 3096f4c0e9e4SHong Zhang 3097f4c0e9e4SHong Zhang /* send values to its owners */ 3098f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 3099f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 3100ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 3101ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 3102ca54ac64SHong Zhang } 3103f4c0e9e4SHong Zhang } 3104f4c0e9e4SHong Zhang 3105f4c0e9e4SHong Zhang /* receive values */ 3106ca54ac64SHong Zhang if (rank) { 3107f4c0e9e4SHong Zhang rvalues = work; 3108ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 3109f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 3110ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 3111f4c0e9e4SHong Zhang /* process values */ 3112f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 3113ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 3114f4c0e9e4SHong Zhang } 3115f4c0e9e4SHong Zhang } 3116ca54ac64SHong Zhang } 3117f4c0e9e4SHong Zhang 31181ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 3119ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 312024d5174aSHong Zhang PetscFunctionReturn(0); 312124d5174aSHong Zhang } 31222798e883SHong Zhang 312341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 31242798e883SHong Zhang { 31252798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3126dfbe8321SBarry Smith PetscErrorCode ierr; 3127d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 31283649974fSBarry Smith PetscScalar *x,*ptr,*from; 3129ffe4fb16SHong Zhang Vec bb1; 31303649974fSBarry Smith const PetscScalar *b; 3131ffe4fb16SHong Zhang 3132ffe4fb16SHong Zhang PetscFunctionBegin; 3133e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3134e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 3135ffe4fb16SHong Zhang 3136a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 313741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3138a2b30743SBarry Smith PetscFunctionReturn(0); 3139a2b30743SBarry Smith } 3140a2b30743SBarry Smith 3141ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 3142ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 314341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 3144ffe4fb16SHong Zhang its--; 3145ffe4fb16SHong Zhang } 3146ffe4fb16SHong Zhang 3147ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 3148ffe4fb16SHong Zhang while (its--) { 3149ffe4fb16SHong Zhang 3150ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 3151ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3152ffe4fb16SHong Zhang 3153ffe4fb16SHong Zhang /* copy xx into slvec0a */ 31541ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 31551ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3156580bdb30SBarry Smith ierr = PetscArraycpy(ptr,x,bs*mbs);CHKERRQ(ierr); 31571ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 3158ffe4fb16SHong Zhang 3159efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 3160ffe4fb16SHong Zhang 3161ffe4fb16SHong Zhang /* copy bb into slvec1a */ 31621ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 31633649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 3164580bdb30SBarry Smith ierr = PetscArraycpy(ptr,b,bs*mbs);CHKERRQ(ierr); 31651ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 3166ffe4fb16SHong Zhang 3167ffe4fb16SHong Zhang /* set slvec1b = 0 */ 3168fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3169ffe4fb16SHong Zhang 3170ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 31711ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3172a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 3173ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3174ffe4fb16SHong Zhang 3175ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 3176ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 3177ffe4fb16SHong Zhang 3178ffe4fb16SHong Zhang /* local diagonal sweep */ 317941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 3180ffe4fb16SHong Zhang } 31816bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 3182fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 318341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3184fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 318541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 3186fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 3187fa22f6d0SBarry Smith Vec xx1; 3188ace3abfcSBarry Smith PetscBool hasop; 318920f1ed55SBarry Smith const PetscScalar *diag; 3190887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 319120f1ed55SBarry Smith PetscInt i,n; 3192fa22f6d0SBarry Smith 3193fa22f6d0SBarry Smith if (!mat->xx1) { 3194fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 3195fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 3196fa22f6d0SBarry Smith } 3197fa22f6d0SBarry Smith xx1 = mat->xx1; 3198fa22f6d0SBarry Smith bb1 = mat->bb1; 3199fa22f6d0SBarry Smith 320041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 3201fa22f6d0SBarry Smith 3202fa22f6d0SBarry Smith if (!mat->diag) { 3203effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 32042a7a6963SBarry Smith ierr = MatCreateVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 3205fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 3206fa22f6d0SBarry Smith } 3207fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 3208fa22f6d0SBarry Smith 3209fa22f6d0SBarry Smith if (hasop) { 3210fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 3211887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 321220f1ed55SBarry Smith } else { 321320f1ed55SBarry Smith /* 321420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 321520f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 3216887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 321720f1ed55SBarry Smith */ 321820f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 32193649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 32203649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 322120f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 322220f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 3223887ee2caSBarry Smith if (omega == 1.0) { 322426fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 322520f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 3226887ee2caSBarry Smith } else { 322726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 3228887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 3229887ee2caSBarry Smith } 323020f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 32313649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 32323649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 323320f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 323420f1ed55SBarry Smith } 3235fa22f6d0SBarry Smith 3236fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 3237fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 3238fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 3239fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 3240fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3241580bdb30SBarry Smith ierr = PetscArraycpy(from,x,bs*mbs);CHKERRQ(ierr); 3242fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 3243fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3244fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3245fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3246effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 3247fa22f6d0SBarry Smith 3248fa22f6d0SBarry Smith /* local sweep */ 324941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 3250fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 3251f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 3252ffe4fb16SHong Zhang PetscFunctionReturn(0); 3253ffe4fb16SHong Zhang } 3254ffe4fb16SHong Zhang 325541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 3256ffe4fb16SHong Zhang { 3257ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 3258dfbe8321SBarry Smith PetscErrorCode ierr; 32592798e883SHong Zhang Vec lvec1,bb1; 32602798e883SHong Zhang 32612798e883SHong Zhang PetscFunctionBegin; 3262e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 3263e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 32642798e883SHong Zhang 3265c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 32662798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 326741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 32682798e883SHong Zhang its--; 32692798e883SHong Zhang } 32702798e883SHong Zhang 32712798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 32722798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 32732798e883SHong Zhang while (its--) { 3274ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32752798e883SHong Zhang 32762798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 32772798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 3278efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 32792798e883SHong Zhang 3280ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32812798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 3282ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32832798e883SHong Zhang 32842798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 3285efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 32862798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 32872798e883SHong Zhang 3288ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 32892798e883SHong Zhang 3290c14dc6b6SHong Zhang /* diagonal sweep */ 329141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 32922798e883SHong Zhang } 32936bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 32946bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 32956bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 32962798e883SHong Zhang PetscFunctionReturn(0); 32972798e883SHong Zhang } 32982798e883SHong Zhang 3299dfb205c3SBarry Smith /*@ 3300dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 3301dfb205c3SBarry Smith CSR format the local rows. 3302dfb205c3SBarry Smith 3303d083f849SBarry Smith Collective 3304dfb205c3SBarry Smith 3305dfb205c3SBarry Smith Input Parameters: 3306dfb205c3SBarry Smith + comm - MPI communicator 3307dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3308dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3309dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3310dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3311dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3312dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3313dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3314483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 3315dfb205c3SBarry Smith . j - column indices 3316dfb205c3SBarry Smith - a - matrix values 3317dfb205c3SBarry Smith 3318dfb205c3SBarry Smith Output Parameter: 3319dfb205c3SBarry Smith . mat - the matrix 3320dfb205c3SBarry Smith 3321dfb205c3SBarry Smith Level: intermediate 3322dfb205c3SBarry Smith 3323dfb205c3SBarry Smith Notes: 3324dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3325dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3326dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3327dfb205c3SBarry Smith 3328dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3329dfb205c3SBarry Smith 3330dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 333169b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3332dfb205c3SBarry Smith @*/ 33337087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3334dfb205c3SBarry Smith { 3335dfb205c3SBarry Smith PetscErrorCode ierr; 3336dfb205c3SBarry Smith 3337dfb205c3SBarry Smith 3338dfb205c3SBarry Smith PetscFunctionBegin; 3339f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3340dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3341dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3342dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3343dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3344dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3345dfb205c3SBarry Smith PetscFunctionReturn(0); 3346dfb205c3SBarry Smith } 3347dfb205c3SBarry Smith 3348dfb205c3SBarry Smith 3349dfb205c3SBarry Smith /*@C 3350664954b6SBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 3351dfb205c3SBarry Smith 3352d083f849SBarry Smith Collective 3353dfb205c3SBarry Smith 3354dfb205c3SBarry Smith Input Parameters: 33551c4f3114SJed Brown + B - the matrix 3356dfb205c3SBarry Smith . bs - the block size 3357dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 3358dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 3359dfb205c3SBarry Smith - v - optional values in the matrix 3360dfb205c3SBarry Smith 3361664954b6SBarry Smith Level: advanced 3362664954b6SBarry Smith 3363664954b6SBarry Smith Notes: 33640cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 33650cd7f59aSBarry Smith and usually the numerical values as well 33660cd7f59aSBarry Smith 336750c5228eSBarry Smith Any entries below the diagonal are ignored 3368dfb205c3SBarry Smith 336969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 3370dfb205c3SBarry Smith @*/ 33717087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3372dfb205c3SBarry Smith { 33734ac538c5SBarry Smith PetscErrorCode ierr; 3374dfb205c3SBarry Smith 3375dfb205c3SBarry Smith PetscFunctionBegin; 33764ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3377dfb205c3SBarry Smith PetscFunctionReturn(0); 3378dfb205c3SBarry Smith } 3379dfb205c3SBarry Smith 338010c56fdeSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 33814dcd73b1SHong Zhang { 33824dcd73b1SHong Zhang PetscErrorCode ierr; 338310c56fdeSHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 338410c56fdeSHong Zhang PetscInt *indx; 338510c56fdeSHong Zhang PetscScalar *values; 3386dfb205c3SBarry Smith 33874dcd73b1SHong Zhang PetscFunctionBegin; 33884dcd73b1SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 338910c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 339010c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inmat->data; 3391de25e9cbSPierre Jolivet PetscInt *dnz,*onz,mbs,Nbs,nbs; 339210c56fdeSHong Zhang PetscInt *bindx,rmax=a->rmax,j; 3393de25e9cbSPierre Jolivet PetscMPIInt rank,size; 33944dcd73b1SHong Zhang 339510c56fdeSHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 339610c56fdeSHong Zhang mbs = m/bs; Nbs = N/cbs; 339710c56fdeSHong Zhang if (n == PETSC_DECIDE) { 3398da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 339910c56fdeSHong Zhang } 3400da91a574SPierre Jolivet nbs = n/cbs; 34014dcd73b1SHong Zhang 34024dcd73b1SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 3403de25e9cbSPierre Jolivet ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 3404de25e9cbSPierre Jolivet 3405de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 3406de25e9cbSPierre Jolivet ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 3407de25e9cbSPierre Jolivet if (rank == size-1) { 3408de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 3409de25e9cbSPierre Jolivet if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 3410de25e9cbSPierre Jolivet } 3411de25e9cbSPierre Jolivet 3412de25e9cbSPierre Jolivet rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 3413e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 341410c56fdeSHong Zhang for (i=0; i<mbs; i++) { 34154dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 34164dcd73b1SHong Zhang nnz = nnz/bs; 34174dcd73b1SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 34184dcd73b1SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 34194dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 34204dcd73b1SHong Zhang } 3421e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 34224dcd73b1SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 34234dcd73b1SHong Zhang 34244dcd73b1SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 3425de25e9cbSPierre Jolivet ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 34264dcd73b1SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 3427ce94fc41SPierre Jolivet ierr = MatSetType(*outmat,MATSBAIJ);CHKERRQ(ierr); 3428ce94fc41SPierre Jolivet ierr = MatSeqSBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 34294dcd73b1SHong Zhang ierr = MatMPISBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 34304dcd73b1SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 34314dcd73b1SHong Zhang } 34324dcd73b1SHong Zhang 343310c56fdeSHong Zhang /* numeric phase */ 34344dcd73b1SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 343510c56fdeSHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 34364dcd73b1SHong Zhang 3437e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 34384dcd73b1SHong Zhang for (i=0; i<m; i++) { 34394dcd73b1SHong Zhang ierr = MatGetRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 34404dcd73b1SHong Zhang Ii = i + rstart; 344110c56fdeSHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 34424dcd73b1SHong Zhang ierr = MatRestoreRow_SeqSBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 34434dcd73b1SHong Zhang } 3444e491d569SHong Zhang ierr = MatSetOption(inmat,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 344510c56fdeSHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 344610c56fdeSHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 34474dcd73b1SHong Zhang PetscFunctionReturn(0); 34484dcd73b1SHong Zhang } 3449