xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision ed1caa07d30b4bf52fa72dab33adf574bdef2af0)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21dfbe8321SBarry Smith EXTERN PetscErrorCode MatGetRowMax_MPISBAIJ(Mat,Vec);
221302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2587828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
26a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
27a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
28a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
29a30f8f8cSSatish Balay    into the single precision data structures.
30a30f8f8cSSatish Balay */
31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
361302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
37a30f8f8cSSatish Balay #else
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
43a30f8f8cSSatish Balay #endif
44a30f8f8cSSatish Balay 
45a30f8f8cSSatish Balay EXTERN_C_BEGIN
464a2ae208SSatish Balay #undef __FUNCT__
474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
48be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
49a30f8f8cSSatish Balay {
50f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
51dfbe8321SBarry Smith   PetscErrorCode ierr;
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay   PetscFunctionBegin;
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
56a30f8f8cSSatish Balay   PetscFunctionReturn(0);
57a30f8f8cSSatish Balay }
58a30f8f8cSSatish Balay EXTERN_C_END
59a30f8f8cSSatish Balay 
60a30f8f8cSSatish Balay EXTERN_C_BEGIN
614a2ae208SSatish Balay #undef __FUNCT__
624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
63be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
64a30f8f8cSSatish Balay {
65f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
66dfbe8321SBarry Smith   PetscErrorCode ierr;
67a30f8f8cSSatish Balay 
68a30f8f8cSSatish Balay   PetscFunctionBegin;
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
71a30f8f8cSSatish Balay   PetscFunctionReturn(0);
72a30f8f8cSSatish Balay }
73a30f8f8cSSatish Balay EXTERN_C_END
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay 
76a30f8f8cSSatish Balay #define CHUNKSIZE  10
77a30f8f8cSSatish Balay 
78a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
79a30f8f8cSSatish Balay { \
80a30f8f8cSSatish Balay  \
81a30f8f8cSSatish Balay     brow = row/bs;  \
82a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
83a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
84a30f8f8cSSatish Balay       bcol = col/bs; \
85a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
86a30f8f8cSSatish Balay       low = 0; high = nrow; \
87a30f8f8cSSatish Balay       while (high-low > 3) { \
88a30f8f8cSSatish Balay         t = (low+high)/2; \
89a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
90a30f8f8cSSatish Balay         else              low  = t; \
91a30f8f8cSSatish Balay       } \
92a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
93a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
94a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
95a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
96a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
97a30f8f8cSSatish Balay           else                    *bap  = value;  \
98a30f8f8cSSatish Balay           goto a_noinsert; \
99a30f8f8cSSatish Balay         } \
100a30f8f8cSSatish Balay       } \
101a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
102085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
103*ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \
104a30f8f8cSSatish Balay       N = nrow++ - 1;  \
105a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
106a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
107a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
108a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
109a30f8f8cSSatish Balay       } \
110a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
111a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
112a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
113a30f8f8cSSatish Balay       a_noinsert:; \
114a30f8f8cSSatish Balay     ailen[brow] = nrow; \
115a30f8f8cSSatish Balay }
116a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
117a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
118a30f8f8cSSatish Balay { \
119a30f8f8cSSatish Balay     brow = row/bs;  \
120a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
121a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
122a30f8f8cSSatish Balay       bcol = col/bs; \
123a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
124a30f8f8cSSatish Balay       low = 0; high = nrow; \
125a30f8f8cSSatish Balay       while (high-low > 3) { \
126a30f8f8cSSatish Balay         t = (low+high)/2; \
127a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
128a30f8f8cSSatish Balay         else              low  = t; \
129a30f8f8cSSatish Balay       } \
130a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
131a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
132a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
133a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
134a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
135a30f8f8cSSatish Balay           else                    *bap  = value;  \
136a30f8f8cSSatish Balay           goto b_noinsert; \
137a30f8f8cSSatish Balay         } \
138a30f8f8cSSatish Balay       } \
139a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
140085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
141*ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \
142a30f8f8cSSatish Balay       N = nrow++ - 1;  \
143a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
144a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
145a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
146a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
147a30f8f8cSSatish Balay       } \
148a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
149a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
150a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
151a30f8f8cSSatish Balay       b_noinsert:; \
152a30f8f8cSSatish Balay     bilen[brow] = nrow; \
153a30f8f8cSSatish Balay }
154a30f8f8cSSatish Balay #endif
155a30f8f8cSSatish Balay 
156a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1574a2ae208SSatish Balay #undef __FUNCT__
1584a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1591302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
160a30f8f8cSSatish Balay {
161a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
162dfbe8321SBarry Smith   PetscErrorCode ierr;
1631302d50aSBarry Smith   PetscInt       i,N = m*n;
164a30f8f8cSSatish Balay   MatScalar      *vsingle;
165a30f8f8cSSatish Balay 
166a30f8f8cSSatish Balay   PetscFunctionBegin;
167a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
168a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
16982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
170a30f8f8cSSatish Balay     b->setvalueslen  = N;
171a30f8f8cSSatish Balay   }
172a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
173a30f8f8cSSatish Balay 
174a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
175a30f8f8cSSatish Balay     vsingle[i] = v[i];
176a30f8f8cSSatish Balay   }
177a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
178a30f8f8cSSatish Balay   PetscFunctionReturn(0);
179a30f8f8cSSatish Balay }
180a30f8f8cSSatish Balay 
1814a2ae208SSatish Balay #undef __FUNCT__
1824a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1831302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
184a30f8f8cSSatish Balay {
185a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
186dfbe8321SBarry Smith   PetscErrorCode ierr;
1871302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
188a30f8f8cSSatish Balay   MatScalar      *vsingle;
189a30f8f8cSSatish Balay 
190a30f8f8cSSatish Balay   PetscFunctionBegin;
191a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
192a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
19382502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
194a30f8f8cSSatish Balay     b->setvalueslen  = N;
195a30f8f8cSSatish Balay   }
196a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
197a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
198a30f8f8cSSatish Balay     vsingle[i] = v[i];
199a30f8f8cSSatish Balay   }
200a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
201a30f8f8cSSatish Balay   PetscFunctionReturn(0);
202a30f8f8cSSatish Balay }
203a30f8f8cSSatish Balay #endif
204a30f8f8cSSatish Balay 
205a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
206a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
207a30f8f8cSSatish Balay */
2084a2ae208SSatish Balay #undef __FUNCT__
209e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
2101302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
211a30f8f8cSSatish Balay {
212a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
213a30f8f8cSSatish Balay   MatScalar      value;
214b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
215dfbe8321SBarry Smith   PetscErrorCode ierr;
2161302d50aSBarry Smith   PetscInt       i,j,row,col;
2171302d50aSBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
2181302d50aSBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
219521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
220a30f8f8cSSatish Balay 
221a30f8f8cSSatish Balay   /* Some Variables required in the macro */
222a30f8f8cSSatish Balay   Mat            A = baij->A;
223a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2241302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
225a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
226a30f8f8cSSatish Balay 
227a30f8f8cSSatish Balay   Mat            B = baij->B;
228a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2291302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
230a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
231a30f8f8cSSatish Balay 
2321302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2331302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
234a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
235a30f8f8cSSatish Balay 
236a30f8f8cSSatish Balay   /* for stash */
2371302d50aSBarry Smith   PetscInt      n_loc, *in_loc=0;
238f65c83cfSHong Zhang   MatScalar     *v_loc=0;
239a30f8f8cSSatish Balay 
240a30f8f8cSSatish Balay   PetscFunctionBegin;
241a30f8f8cSSatish Balay 
242a30f8f8cSSatish Balay   if(!baij->donotstash){
2431302d50aSBarry Smith     ierr = PetscMalloc(n*sizeof(PetscInt),&in_loc);CHKERRQ(ierr);
24482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
245a30f8f8cSSatish Balay   }
246a30f8f8cSSatish Balay 
247a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
248a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
25077431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
251a30f8f8cSSatish Balay #endif
252a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
253a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
254a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
255f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
256a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
257a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
258a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
259a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
260a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
261a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
262a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
263a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
26577431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->N-1);}
266a30f8f8cSSatish Balay #endif
267a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
268a30f8f8cSSatish Balay           if (mat->was_assembled) {
269a30f8f8cSSatish Balay             if (!baij->colmap) {
270653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
271a30f8f8cSSatish Balay             }
272a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
273a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
27471730473SSatish Balay             col  = col - 1;
275a30f8f8cSSatish Balay #else
27671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
277a30f8f8cSSatish Balay #endif
278a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
279a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
280a30f8f8cSSatish Balay               col =  in[j];
281a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
282a30f8f8cSSatish Balay               B = baij->B;
283a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
284a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
285a30f8f8cSSatish Balay               ba=b->a;
28671730473SSatish Balay             } else col += in[j]%bs;
287a30f8f8cSSatish Balay           } else col = in[j];
288a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
289a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
290a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
291a30f8f8cSSatish Balay         }
292a30f8f8cSSatish Balay       }
293a30f8f8cSSatish Balay     } else {  /* off processor entry */
294a30f8f8cSSatish Balay       if (!baij->donotstash) {
295a30f8f8cSSatish Balay         n_loc = 0;
296a30f8f8cSSatish Balay         for (j=0; j<n; j++){
297f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
298a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
299a30f8f8cSSatish Balay           if (roworiented) {
300a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
301a30f8f8cSSatish Balay           } else {
302a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
303a30f8f8cSSatish Balay           }
304a30f8f8cSSatish Balay           n_loc++;
305a30f8f8cSSatish Balay         }
306a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
307a30f8f8cSSatish Balay       }
308a30f8f8cSSatish Balay     }
309a30f8f8cSSatish Balay   }
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   if(!baij->donotstash){
312a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
313a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
314a30f8f8cSSatish Balay   }
315a30f8f8cSSatish Balay   PetscFunctionReturn(0);
316a30f8f8cSSatish Balay }
317a30f8f8cSSatish Balay 
3184a2ae208SSatish Balay #undef __FUNCT__
319e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3201302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
321a30f8f8cSSatish Balay {
3220880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
323f15d580aSBarry Smith   const MatScalar *value;
324f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3250880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
326dfbe8321SBarry Smith   PetscErrorCode  ierr;
3271302d50aSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
3281302d50aSBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
329521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
3300880e062SHong Zhang 
331a30f8f8cSSatish Balay   PetscFunctionBegin;
3320880e062SHong Zhang   if(!barray) {
3330880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3340880e062SHong Zhang     baij->barray = barray;
3350880e062SHong Zhang   }
3360880e062SHong Zhang 
3370880e062SHong Zhang   if (roworiented) {
3380880e062SHong Zhang     stepval = (n-1)*bs;
3390880e062SHong Zhang   } else {
3400880e062SHong Zhang     stepval = (m-1)*bs;
3410880e062SHong Zhang   }
3420880e062SHong Zhang   for (i=0; i<m; i++) {
3430880e062SHong Zhang     if (im[i] < 0) continue;
3442515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
34577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3460880e062SHong Zhang #endif
3470880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3480880e062SHong Zhang       row = im[i] - rstart;
3490880e062SHong Zhang       for (j=0; j<n; j++) {
3500880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3510880e062SHong Zhang         if ((roworiented) && (n == 1)) {
352f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3530880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
354f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3550880e062SHong Zhang         } else { /* Here a copy is required */
3560880e062SHong Zhang           if (roworiented) {
3570880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3580880e062SHong Zhang           } else {
3590880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3600880e062SHong Zhang           }
3610880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3620880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3630880e062SHong Zhang               *barray++  = *value++;
3640880e062SHong Zhang             }
3650880e062SHong Zhang           }
3660880e062SHong Zhang           barray -=bs2;
3670880e062SHong Zhang         }
3680880e062SHong Zhang 
3690880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3700880e062SHong Zhang           col  = in[j] - cstart;
3710880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3720880e062SHong Zhang         }
3730880e062SHong Zhang         else if (in[j] < 0) continue;
3742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
37577431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3760880e062SHong Zhang #endif
3770880e062SHong Zhang         else {
3780880e062SHong Zhang           if (mat->was_assembled) {
3790880e062SHong Zhang             if (!baij->colmap) {
380653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3810880e062SHong Zhang             }
3820880e062SHong Zhang 
3832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3840880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3851302d50aSBarry Smith             { PetscInt data;
3860880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3870880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3880880e062SHong Zhang             }
3890880e062SHong Zhang #else
3900880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3910880e062SHong Zhang #endif
3920880e062SHong Zhang #endif
3930880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3940880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3950880e062SHong Zhang             col  = (col - 1)/bs;
3960880e062SHong Zhang #else
3970880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3980880e062SHong Zhang #endif
3990880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4000880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4010880e062SHong Zhang               col =  in[j];
4020880e062SHong Zhang             }
4030880e062SHong Zhang           }
4040880e062SHong Zhang           else col = in[j];
405e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4060880e062SHong Zhang         }
4070880e062SHong Zhang       }
4080880e062SHong Zhang     } else {
4090880e062SHong Zhang       if (!baij->donotstash) {
4100880e062SHong Zhang         if (roworiented) {
4110880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4120880e062SHong Zhang         } else {
4130880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4140880e062SHong Zhang         }
4150880e062SHong Zhang       }
4160880e062SHong Zhang     }
4170880e062SHong Zhang   }
4180880e062SHong Zhang   PetscFunctionReturn(0);
419a30f8f8cSSatish Balay }
420a30f8f8cSSatish Balay 
4214a2ae208SSatish Balay #undef __FUNCT__
4224a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4231302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
424a30f8f8cSSatish Balay {
425f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4266849ba73SBarry Smith   PetscErrorCode ierr;
427521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
4281302d50aSBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
429a30f8f8cSSatish Balay 
430a30f8f8cSSatish Balay   PetscFunctionBegin;
431a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43277431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
43377431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
434a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
435a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
436a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
43777431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]);
43877431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
439a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
440a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
441c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
442a30f8f8cSSatish Balay         } else {
443a30f8f8cSSatish Balay           if (!baij->colmap) {
444653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
445a30f8f8cSSatish Balay           }
446a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
447a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
448a30f8f8cSSatish Balay           data --;
449a30f8f8cSSatish Balay #else
450a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
451a30f8f8cSSatish Balay #endif
452a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
453a30f8f8cSSatish Balay           else {
454a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
455e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
456a30f8f8cSSatish Balay           }
457a30f8f8cSSatish Balay         }
458a30f8f8cSSatish Balay       }
459a30f8f8cSSatish Balay     } else {
46029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
461a30f8f8cSSatish Balay     }
462a30f8f8cSSatish Balay   }
463a30f8f8cSSatish Balay  PetscFunctionReturn(0);
464a30f8f8cSSatish Balay }
465a30f8f8cSSatish Balay 
4664a2ae208SSatish Balay #undef __FUNCT__
4674a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
468dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
469a30f8f8cSSatish Balay {
470a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
471dfbe8321SBarry Smith   PetscErrorCode ierr;
472a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
473a30f8f8cSSatish Balay 
474a30f8f8cSSatish Balay   PetscFunctionBegin;
475a30f8f8cSSatish Balay   if (baij->size == 1) {
476a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
477a30f8f8cSSatish Balay   } else {
478a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
479f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
480a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
481a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
482a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
483a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
484d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
485a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
486a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4870b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4880b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4890b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4900b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
4910b8dc8d2SHong Zhang       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstart,nz;
4920b8dc8d2SHong Zhang       PetscInt     brow,bcol,col,bs=baij->A->bs,row,grow,gcol,mbs=amat->mbs;
4930b8dc8d2SHong Zhang       MatScalar    *v;
4940b8dc8d2SHong Zhang 
4950b8dc8d2SHong Zhang       ierr  = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
4960b8dc8d2SHong Zhang       rsum2 = rsum + mat->N;
4970b8dc8d2SHong Zhang       ierr  = PetscMemzero(rsum,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
4980b8dc8d2SHong Zhang       /* Amat */
4990b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5000b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5010b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5020b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5030b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5040b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5050b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5060b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5070b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5080b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5090b8dc8d2SHong Zhang               /* non-diagonal block */
5100b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5110b8dc8d2SHong Zhang             }
5120b8dc8d2SHong Zhang           }
5130b8dc8d2SHong Zhang         }
5140b8dc8d2SHong Zhang       }
5150b8dc8d2SHong Zhang       /* Bmat */
5160b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5170b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5180b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5190b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5200b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5210b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5220b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5230b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5240b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5250b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5260b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5270b8dc8d2SHong Zhang             }
5280b8dc8d2SHong Zhang           }
5290b8dc8d2SHong Zhang         }
5300b8dc8d2SHong Zhang       }
5310b8dc8d2SHong Zhang       ierr = MPI_Allreduce(rsum,rsum2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5320b8dc8d2SHong Zhang       *norm = 0.0;
5330b8dc8d2SHong Zhang       for (col=0; col<mat->N; col++) {
5340b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5350b8dc8d2SHong Zhang       }
5360b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
537a30f8f8cSSatish Balay     } else {
53829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
539a30f8f8cSSatish Balay     }
540a30f8f8cSSatish Balay   }
541a30f8f8cSSatish Balay   PetscFunctionReturn(0);
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
5444a2ae208SSatish Balay #undef __FUNCT__
5454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
546dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
547a30f8f8cSSatish Balay {
548a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
549dfbe8321SBarry Smith   PetscErrorCode ierr;
5501302d50aSBarry Smith   PetscInt       nstash,reallocs;
551a30f8f8cSSatish Balay   InsertMode     addv;
552a30f8f8cSSatish Balay 
553a30f8f8cSSatish Balay   PetscFunctionBegin;
554a30f8f8cSSatish Balay   if (baij->donotstash) {
555a30f8f8cSSatish Balay     PetscFunctionReturn(0);
556a30f8f8cSSatish Balay   }
557a30f8f8cSSatish Balay 
558a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
559a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
560a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
562a30f8f8cSSatish Balay   }
563a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
566a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
56863ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
569a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
57063ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
571a30f8f8cSSatish Balay   PetscFunctionReturn(0);
572a30f8f8cSSatish Balay }
573a30f8f8cSSatish Balay 
5744a2ae208SSatish Balay #undef __FUNCT__
5754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
576dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
577a30f8f8cSSatish Balay {
578a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
579a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
580a30f8f8cSSatish Balay   Mat_SeqBAIJ    *b=(Mat_SeqBAIJ*)baij->B->data;
5816849ba73SBarry Smith   PetscErrorCode ierr;
58213f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5831302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
58413f74950SBarry Smith   PetscMPIInt    n;
585a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
586a30f8f8cSSatish Balay   MatScalar      *val;
587a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
588a30f8f8cSSatish Balay 
589a30f8f8cSSatish Balay   PetscFunctionBegin;
590a30f8f8cSSatish Balay 
591a30f8f8cSSatish Balay   if (!baij->donotstash) {
592a30f8f8cSSatish Balay     while (1) {
593a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
594a30f8f8cSSatish Balay       if (!flg) break;
595a30f8f8cSSatish Balay 
596a30f8f8cSSatish Balay       for (i=0; i<n;) {
597a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
598a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
599a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
600a30f8f8cSSatish Balay         else       ncols = n-i;
601a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
602a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
603a30f8f8cSSatish Balay         i = j;
604a30f8f8cSSatish Balay       }
605a30f8f8cSSatish Balay     }
606a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
607a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
608a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
609a30f8f8cSSatish Balay        restore the original flags */
610a30f8f8cSSatish Balay     r1 = baij->roworiented;
611a30f8f8cSSatish Balay     r2 = a->roworiented;
612a30f8f8cSSatish Balay     r3 = b->roworiented;
613a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
614a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
615a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
616a30f8f8cSSatish Balay     while (1) {
617a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
618a30f8f8cSSatish Balay       if (!flg) break;
619a30f8f8cSSatish Balay 
620a30f8f8cSSatish Balay       for (i=0; i<n;) {
621a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
622a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
623a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
624a30f8f8cSSatish Balay         else       ncols = n-i;
625a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
626a30f8f8cSSatish Balay         i = j;
627a30f8f8cSSatish Balay       }
628a30f8f8cSSatish Balay     }
629a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
630a30f8f8cSSatish Balay     baij->roworiented = r1;
631a30f8f8cSSatish Balay     a->roworiented    = r2;
632a30f8f8cSSatish Balay     b->roworiented    = r3;
633a30f8f8cSSatish Balay   }
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
636a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
637a30f8f8cSSatish Balay 
638a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
639a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
640a30f8f8cSSatish Balay   /*
641a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
642a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
643a30f8f8cSSatish Balay   */
644a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
645a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
646a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
647c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
648a30f8f8cSSatish Balay     }
649a30f8f8cSSatish Balay   }
650a30f8f8cSSatish Balay 
651a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
653a30f8f8cSSatish Balay   }
6544eb6d288SHong Zhang   b->compressedrow.use = PETSC_TRUE;
655a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
656a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (baij->rowvalues) {
659a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
660a30f8f8cSSatish Balay     baij->rowvalues = 0;
661a30f8f8cSSatish Balay   }
6625222a1afSHong Zhang 
663a30f8f8cSSatish Balay   PetscFunctionReturn(0);
664a30f8f8cSSatish Balay }
665a30f8f8cSSatish Balay 
6664a2ae208SSatish Balay #undef __FUNCT__
6674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6686849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
669a30f8f8cSSatish Balay {
670a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
671dfbe8321SBarry Smith   PetscErrorCode    ierr;
672521d7252SBarry Smith   PetscInt          bs = mat->bs;
6731302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
67432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
675b0a32e0cSBarry Smith   PetscViewer       sviewer;
676f3ef73ceSBarry Smith   PetscViewerFormat format;
677a30f8f8cSSatish Balay 
678a30f8f8cSSatish Balay   PetscFunctionBegin;
67932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
680fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68132077d6dSBarry Smith   if (iascii) {
682b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
683456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
684a30f8f8cSSatish Balay       MatInfo info;
685a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
686a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
68777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
68877431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
689521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
690a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
694b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
695a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       PetscFunctionReturn(0);
697fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
69877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
699a30f8f8cSSatish Balay       PetscFunctionReturn(0);
700a30f8f8cSSatish Balay     }
701a30f8f8cSSatish Balay   }
702a30f8f8cSSatish Balay 
703a30f8f8cSSatish Balay   if (isdraw) {
704b0a32e0cSBarry Smith     PetscDraw       draw;
705a30f8f8cSSatish Balay     PetscTruth isnull;
706b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
707b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
708a30f8f8cSSatish Balay   }
709a30f8f8cSSatish Balay 
710a30f8f8cSSatish Balay   if (size == 1) {
711e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay   } else {
714a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
715a30f8f8cSSatish Balay     Mat         A;
71665d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
71765d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
7181302d50aSBarry Smith     PetscInt         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
719a30f8f8cSSatish Balay     MatScalar   *a;
720a30f8f8cSSatish Balay 
721f204ca49SKris Buschelman     /* Should this be the same type as mat? */
722a30f8f8cSSatish Balay     if (!rank) {
723f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
724a30f8f8cSSatish Balay     } else {
725f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
726a30f8f8cSSatish Balay     }
727f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
728521d7252SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
72952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
730a30f8f8cSSatish Balay 
731a30f8f8cSSatish Balay     /* copy over the A part */
73265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
733a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7341302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
735a30f8f8cSSatish Balay 
736a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
737a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
738a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
739a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
740a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
741a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
742a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
743a30f8f8cSSatish Balay           col++; a += bs;
744a30f8f8cSSatish Balay         }
745a30f8f8cSSatish Balay       }
746a30f8f8cSSatish Balay     }
747a30f8f8cSSatish Balay     /* copy over the B part */
74865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
74965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
750a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
751a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
752a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
753a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
754a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
755a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
756a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
757a30f8f8cSSatish Balay           col++; a += bs;
758a30f8f8cSSatish Balay         }
759a30f8f8cSSatish Balay       }
760a30f8f8cSSatish Balay     }
761a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
762a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
763a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
764a30f8f8cSSatish Balay     /*
765a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
766b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
767a30f8f8cSSatish Balay     */
768b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
76965d70643SHong Zhang     if (!rank) {
770e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
771a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
772a30f8f8cSSatish Balay     }
773b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
775a30f8f8cSSatish Balay   }
776a30f8f8cSSatish Balay   PetscFunctionReturn(0);
777a30f8f8cSSatish Balay }
778a30f8f8cSSatish Balay 
7794a2ae208SSatish Balay #undef __FUNCT__
7804a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
781dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
782a30f8f8cSSatish Balay {
783dfbe8321SBarry Smith   PetscErrorCode ierr;
78432077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
785a30f8f8cSSatish Balay 
786a30f8f8cSSatish Balay   PetscFunctionBegin;
78732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
788fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
789b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
790fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
79132077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
792a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
793a30f8f8cSSatish Balay   } else {
7941302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
795a30f8f8cSSatish Balay   }
796a30f8f8cSSatish Balay   PetscFunctionReturn(0);
797a30f8f8cSSatish Balay }
798a30f8f8cSSatish Balay 
7994a2ae208SSatish Balay #undef __FUNCT__
8004a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
801dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
802a30f8f8cSSatish Balay {
803a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
804dfbe8321SBarry Smith   PetscErrorCode ierr;
805a30f8f8cSSatish Balay 
806a30f8f8cSSatish Balay   PetscFunctionBegin;
807a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
80877431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
809a30f8f8cSSatish Balay #endif
810a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
811a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
812a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
813a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
814a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
815a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
816a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
817a30f8f8cSSatish Balay #else
818a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
819a30f8f8cSSatish Balay #endif
820a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
821a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
822a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
82340781036SHong Zhang   if (baij->slvec0) {
82440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
82540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
82640781036SHong Zhang   }
82740781036SHong Zhang   if (baij->slvec1) {
82840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
82940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
83040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
83140781036SHong Zhang   }
83240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
833a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
834a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
835a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
836a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
837a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
838a30f8f8cSSatish Balay #endif
839a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
840901853e0SKris Buschelman 
841901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
842901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
843901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
844901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
845a30f8f8cSSatish Balay   PetscFunctionReturn(0);
846a30f8f8cSSatish Balay }
847a30f8f8cSSatish Balay 
8484a2ae208SSatish Balay #undef __FUNCT__
849a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
850dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
851a9d4b620SHong Zhang {
852a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
853dfbe8321SBarry Smith   PetscErrorCode ierr;
854521d7252SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->bs;
855a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
856a9d4b620SHong Zhang 
857a9d4b620SHong Zhang   PetscFunctionBegin;
858a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
859a9d4b620SHong Zhang   if (nt != A->n) {
860a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
861a9d4b620SHong Zhang   }
862a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
863a9d4b620SHong Zhang   if (nt != A->m) {
864a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
865a9d4b620SHong Zhang   }
866a9d4b620SHong Zhang 
867a9d4b620SHong Zhang   /* diagonal part */
868a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
869a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
870a9d4b620SHong Zhang 
871a9d4b620SHong Zhang   /* subdiagonal part */
872a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
873a9d4b620SHong Zhang 
874a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8751ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8761ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
877a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8781ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
879a9d4b620SHong Zhang 
880a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
8811ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
882a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
883a9d4b620SHong Zhang 
884a9d4b620SHong Zhang   /* supperdiagonal part */
885a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
886a9d4b620SHong Zhang 
887a9d4b620SHong Zhang   PetscFunctionReturn(0);
888a9d4b620SHong Zhang }
889a9d4b620SHong Zhang 
890a9d4b620SHong Zhang #undef __FUNCT__
89140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
892dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
893a30f8f8cSSatish Balay {
894a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
895dfbe8321SBarry Smith   PetscErrorCode ierr;
8961302d50aSBarry Smith   PetscInt       nt;
897a30f8f8cSSatish Balay 
898a30f8f8cSSatish Balay   PetscFunctionBegin;
899a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
900b5df2d14SHong Zhang   if (nt != A->n) {
90129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
902a30f8f8cSSatish Balay   }
903a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
904b5df2d14SHong Zhang   if (nt != A->m) {
90529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
906a30f8f8cSSatish Balay   }
90765d70643SHong Zhang 
908b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
909b941877fSHong Zhang   /* do diagonal part */
910b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
911b941877fSHong Zhang   /* do supperdiagonal part */
912b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
913b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
914b941877fSHong Zhang   /* do subdiagonal part */
915b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
916b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
917b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
91865d70643SHong Zhang 
919a30f8f8cSSatish Balay   PetscFunctionReturn(0);
920a30f8f8cSSatish Balay }
921a30f8f8cSSatish Balay 
9224a2ae208SSatish Balay #undef __FUNCT__
9234a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
924dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
925a30f8f8cSSatish Balay {
926de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
927dfbe8321SBarry Smith   PetscErrorCode ierr;
928521d7252SBarry Smith   PetscInt       mbs=a->mbs,bs=A->bs;
929a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
930a9d4b620SHong Zhang 
931a9d4b620SHong Zhang   PetscFunctionBegin;
932a9d4b620SHong Zhang   /*
93356faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
93456faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
935a9d4b620SHong Zhang   */
936a9d4b620SHong Zhang   /* diagonal part */
937a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
938a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
939a9d4b620SHong Zhang 
940a9d4b620SHong Zhang   /* subdiagonal part */
941a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
942a9d4b620SHong Zhang 
943a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9441ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9451ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
946a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9471ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
948a9d4b620SHong Zhang 
949a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
9501ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
951a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
952a9d4b620SHong Zhang 
953a9d4b620SHong Zhang   /* supperdiagonal part */
954a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
955a9d4b620SHong Zhang 
956a9d4b620SHong Zhang   PetscFunctionReturn(0);
957a9d4b620SHong Zhang }
958a9d4b620SHong Zhang 
959a9d4b620SHong Zhang #undef __FUNCT__
960a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
961dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
962a9d4b620SHong Zhang {
963a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
964dfbe8321SBarry Smith   PetscErrorCode ierr;
965a30f8f8cSSatish Balay 
966a30f8f8cSSatish Balay   PetscFunctionBegin;
967b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
968b941877fSHong Zhang   /* do diagonal part */
969b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
970b941877fSHong Zhang   /* do supperdiagonal part */
971b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
972de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
973de8b6608SHong Zhang 
974b941877fSHong Zhang   /* do subdiagonal part */
975a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
976a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
977a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
978aa482183SHong Zhang 
979a30f8f8cSSatish Balay   PetscFunctionReturn(0);
980a30f8f8cSSatish Balay }
981a30f8f8cSSatish Balay 
9824a2ae208SSatish Balay #undef __FUNCT__
9834a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
984dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
985a30f8f8cSSatish Balay {
986dfbe8321SBarry Smith   PetscErrorCode ierr;
9875a7c0312SHong Zhang 
988a30f8f8cSSatish Balay   PetscFunctionBegin;
9895a7c0312SHong Zhang   ierr = MatMult(A,xx,yy);CHKERRQ(ierr);
9905a7c0312SHong Zhang   PetscFunctionReturn(0);
991a30f8f8cSSatish Balay }
992a30f8f8cSSatish Balay 
9934a2ae208SSatish Balay #undef __FUNCT__
9944a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
995dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
996a30f8f8cSSatish Balay {
997dfbe8321SBarry Smith   PetscErrorCode ierr;
9985a7c0312SHong Zhang 
999a30f8f8cSSatish Balay   PetscFunctionBegin;
10005a7c0312SHong Zhang   ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr);
10015a7c0312SHong Zhang   PetscFunctionReturn(0);
1002a30f8f8cSSatish Balay }
1003a30f8f8cSSatish Balay 
1004a30f8f8cSSatish Balay /*
1005a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1006a30f8f8cSSatish Balay    diagonal block
1007a30f8f8cSSatish Balay */
10084a2ae208SSatish Balay #undef __FUNCT__
10094a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1010dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1011a30f8f8cSSatish Balay {
1012a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1013dfbe8321SBarry Smith   PetscErrorCode ierr;
1014a30f8f8cSSatish Balay 
1015a30f8f8cSSatish Balay   PetscFunctionBegin;
101629bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1017a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1018a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1019a30f8f8cSSatish Balay }
1020a30f8f8cSSatish Balay 
10214a2ae208SSatish Balay #undef __FUNCT__
10224a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1023dfbe8321SBarry Smith PetscErrorCode MatScale_MPISBAIJ(const PetscScalar *aa,Mat A)
1024a30f8f8cSSatish Balay {
1025a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1026dfbe8321SBarry Smith   PetscErrorCode ierr;
1027a30f8f8cSSatish Balay 
1028a30f8f8cSSatish Balay   PetscFunctionBegin;
1029a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1030a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1031a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1032a30f8f8cSSatish Balay }
1033a30f8f8cSSatish Balay 
10344a2ae208SSatish Balay #undef __FUNCT__
10354a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10361302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1037a30f8f8cSSatish Balay {
1038a30f8f8cSSatish Balay   PetscFunctionBegin;
103980e57f9fSHong Zhang   SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format");
1040a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1041a30f8f8cSSatish Balay }
1042a30f8f8cSSatish Balay 
10434a2ae208SSatish Balay #undef __FUNCT__
10444a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10451302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1046a30f8f8cSSatish Balay {
1047a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1048a30f8f8cSSatish Balay 
1049a30f8f8cSSatish Balay   PetscFunctionBegin;
1050abc0a331SBarry Smith   if (!baij->getrowactive) {
1051abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1052a30f8f8cSSatish Balay   }
1053a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1054a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1055a30f8f8cSSatish Balay }
1056a30f8f8cSSatish Balay 
10574a2ae208SSatish Balay #undef __FUNCT__
10584a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1059dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1060a30f8f8cSSatish Balay {
1061a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1062dfbe8321SBarry Smith   PetscErrorCode ierr;
1063a30f8f8cSSatish Balay 
1064a30f8f8cSSatish Balay   PetscFunctionBegin;
1065a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1066a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1067a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1068a30f8f8cSSatish Balay }
1069a30f8f8cSSatish Balay 
10704a2ae208SSatish Balay #undef __FUNCT__
10714a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1072dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1073a30f8f8cSSatish Balay {
1074a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1075a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1076dfbe8321SBarry Smith   PetscErrorCode ierr;
1077a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1078a30f8f8cSSatish Balay 
1079a30f8f8cSSatish Balay   PetscFunctionBegin;
1080521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
1081a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1082a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1083a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1084a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1085a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1086a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1087a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1088a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1089a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1090a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1091a30f8f8cSSatish Balay     info->memory       = isend[3];
1092a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1093a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1094d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1095a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1096a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1097a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1098a30f8f8cSSatish Balay     info->memory       = irecv[3];
1099a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1100a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1101d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1102a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1103a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1104a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1105a30f8f8cSSatish Balay     info->memory       = irecv[3];
1106a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1107a30f8f8cSSatish Balay   } else {
110877431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1109a30f8f8cSSatish Balay   }
1110f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1111f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1112f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1113f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1114a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1115a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1116a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1117a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1118a30f8f8cSSatish Balay }
1119a30f8f8cSSatish Balay 
11204a2ae208SSatish Balay #undef __FUNCT__
11214a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1122dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op)
1123a30f8f8cSSatish Balay {
1124a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1125dfbe8321SBarry Smith   PetscErrorCode ierr;
1126a30f8f8cSSatish Balay 
1127a30f8f8cSSatish Balay   PetscFunctionBegin;
1128e98b92d7SKris Buschelman   switch (op) {
1129e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1130e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1131e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1132e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1133e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1134e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1135e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1136a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1138e98b92d7SKris Buschelman     break;
1139e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1140a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1141a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1142a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1143e98b92d7SKris Buschelman     break;
1144e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1145e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1146e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
114763ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
1148e98b92d7SKris Buschelman     break;
1149e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1150a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1151a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1152a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1153e98b92d7SKris Buschelman     break;
1154e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1155a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1156e98b92d7SKris Buschelman     break;
1157e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
115829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1159e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1160a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1161e98b92d7SKris Buschelman     break;
11629a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
11639a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
11649a4540c5SBarry Smith   case MAT_HERMITIAN:
11659a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
116677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
116777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
11689a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
11699a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
11709a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
117177e54ba9SKris Buschelman     break;
1172e98b92d7SKris Buschelman   default:
117329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1174a30f8f8cSSatish Balay   }
1175a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1176a30f8f8cSSatish Balay }
1177a30f8f8cSSatish Balay 
11784a2ae208SSatish Balay #undef __FUNCT__
11798115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1180dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1181a30f8f8cSSatish Balay {
1182dfbe8321SBarry Smith   PetscErrorCode ierr;
1183a30f8f8cSSatish Balay   PetscFunctionBegin;
1184999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
11858115998fSBarry Smith   PetscFunctionReturn(0);
1186a30f8f8cSSatish Balay }
1187a30f8f8cSSatish Balay 
11884a2ae208SSatish Balay #undef __FUNCT__
11894a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1190dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1191a30f8f8cSSatish Balay {
1192a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1193a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
11955e90f9d9SHong Zhang   PetscInt       nv,m,n;
1196b3bf805bSHong Zhang   PetscTruth     flg;
1197a30f8f8cSSatish Balay 
1198a30f8f8cSSatish Balay   PetscFunctionBegin;
1199a30f8f8cSSatish Balay   if (ll != rr){
1200b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1201b3bf805bSHong Zhang     if (!flg)
120229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1203a30f8f8cSSatish Balay   }
1204b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1205b3bf805bSHong Zhang 
12065e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12075e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1208b3bf805bSHong Zhang 
12095e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12105e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12115e90f9d9SHong Zhang 
1212a30f8f8cSSatish Balay   ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
12135e90f9d9SHong Zhang 
12145e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1215a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12165e90f9d9SHong Zhang 
12175e90f9d9SHong Zhang   /* scale the diagonal part */
1218a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1219a30f8f8cSSatish Balay 
12205e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1221a30f8f8cSSatish Balay   ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1222a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1223a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1224a30f8f8cSSatish Balay }
1225a30f8f8cSSatish Balay 
12264a2ae208SSatish Balay #undef __FUNCT__
12274a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1228dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPISBAIJ(Mat A)
1229a30f8f8cSSatish Balay {
1230a30f8f8cSSatish Balay   Mat_MPISBAIJ      *a = (Mat_MPISBAIJ*)A->data;
1231a30f8f8cSSatish Balay   MPI_Comm          comm = A->comm;
12321302d50aSBarry Smith   static PetscTruth called = PETSC_FALSE;
1233dfbe8321SBarry Smith   PetscErrorCode    ierr;
1234a30f8f8cSSatish Balay 
1235a30f8f8cSSatish Balay   PetscFunctionBegin;
1236a30f8f8cSSatish Balay   if (!a->rank) {
1237a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1238a30f8f8cSSatish Balay   }
12391302d50aSBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1240a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1241a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1242a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1243a30f8f8cSSatish Balay }
1244a30f8f8cSSatish Balay 
12454a2ae208SSatish Balay #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1247dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1248a30f8f8cSSatish Balay {
1249f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1250dfbe8321SBarry Smith   PetscErrorCode ierr;
1251a30f8f8cSSatish Balay 
1252a30f8f8cSSatish Balay   PetscFunctionBegin;
1253a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1254a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1255a30f8f8cSSatish Balay }
1256a30f8f8cSSatish Balay 
12576849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1258a30f8f8cSSatish Balay 
12594a2ae208SSatish Balay #undef __FUNCT__
12604a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1261dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1262a30f8f8cSSatish Balay {
1263a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1264a30f8f8cSSatish Balay   Mat            a,b,c,d;
1265a30f8f8cSSatish Balay   PetscTruth     flg;
1266dfbe8321SBarry Smith   PetscErrorCode ierr;
1267a30f8f8cSSatish Balay 
1268a30f8f8cSSatish Balay   PetscFunctionBegin;
1269a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1270a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1271a30f8f8cSSatish Balay 
1272a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1273abc0a331SBarry Smith   if (flg) {
1274a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1275a30f8f8cSSatish Balay   }
1276a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1277a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1278a30f8f8cSSatish Balay }
1279a30f8f8cSSatish Balay 
12804a2ae208SSatish Balay #undef __FUNCT__
12814a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1282dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1283273d9f13SBarry Smith {
1284dfbe8321SBarry Smith   PetscErrorCode ierr;
1285273d9f13SBarry Smith 
1286273d9f13SBarry Smith   PetscFunctionBegin;
1287273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1288273d9f13SBarry Smith   PetscFunctionReturn(0);
1289273d9f13SBarry Smith }
1290a5e6ed63SBarry Smith 
1291a5e6ed63SBarry Smith #undef __FUNCT__
1292a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
12931302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1294a5e6ed63SBarry Smith {
12956849ba73SBarry Smith   PetscErrorCode ierr;
12961302d50aSBarry Smith   PetscInt       i;
1297a5e6ed63SBarry Smith   PetscTruth     flg;
1298a5e6ed63SBarry Smith 
12996849ba73SBarry Smith   PetscFunctionBegin;
1300a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1301a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1302a5e6ed63SBarry Smith     if (!flg) {
13031302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1304a5e6ed63SBarry Smith     }
1305a5e6ed63SBarry Smith   }
1306a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1307a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1308a5e6ed63SBarry Smith }
1309a5e6ed63SBarry Smith 
1310a5e6ed63SBarry Smith 
1311a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1312a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1313a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1314a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1315a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1316a9d4b620SHong Zhang        MatMult_MPISBAIJ,
131797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1318a30f8f8cSSatish Balay        MatMultTranspose_MPISBAIJ,
1319a30f8f8cSSatish Balay        MatMultTransposeAdd_MPISBAIJ,
1320a30f8f8cSSatish Balay        0,
1321a30f8f8cSSatish Balay        0,
1322a30f8f8cSSatish Balay        0,
132397304618SKris Buschelman /*10*/ 0,
1324a30f8f8cSSatish Balay        0,
1325a30f8f8cSSatish Balay        0,
13262798e883SHong Zhang        MatRelax_MPISBAIJ,
1327a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
132897304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1329a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1330a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1331a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1332a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
133397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1334a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1335a30f8f8cSSatish Balay        0,
1336a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1337a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1338dcf5cc72SBarry Smith /*25*/ 0,
1339a30f8f8cSSatish Balay        0,
1340a30f8f8cSSatish Balay        0,
1341a30f8f8cSSatish Balay        0,
1342a30f8f8cSSatish Balay        0,
134397304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1344b5df2d14SHong Zhang        0,
1345a30f8f8cSSatish Balay        0,
1346a30f8f8cSSatish Balay        0,
1347a30f8f8cSSatish Balay        0,
134897304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1349a30f8f8cSSatish Balay        0,
1350a30f8f8cSSatish Balay        0,
1351a30f8f8cSSatish Balay        0,
1352a30f8f8cSSatish Balay        0,
135397304618SKris Buschelman /*40*/ 0,
1354a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1355d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1356a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
1357a30f8f8cSSatish Balay        0,
135897304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ,
1359a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1360a30f8f8cSSatish Balay        0,
1361a30f8f8cSSatish Balay        0,
1362a30f8f8cSSatish Balay        0,
1363521d7252SBarry Smith /*50*/ 0,
1364a30f8f8cSSatish Balay        0,
1365a30f8f8cSSatish Balay        0,
1366a30f8f8cSSatish Balay        0,
1367a30f8f8cSSatish Balay        0,
136897304618SKris Buschelman /*55*/ 0,
1369a30f8f8cSSatish Balay        0,
1370a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1371a30f8f8cSSatish Balay        0,
1372a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
137397304618SKris Buschelman /*60*/ 0,
1374a30f8f8cSSatish Balay        0,
1375a30f8f8cSSatish Balay        0,
13768a124369SBarry Smith        MatGetPetscMaps_Petsc,
137724d5174aSHong Zhang        0,
137897304618SKris Buschelman /*65*/ 0,
137924d5174aSHong Zhang        0,
138024d5174aSHong Zhang        0,
138124d5174aSHong Zhang        0,
138224d5174aSHong Zhang        0,
138397304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ,
138424d5174aSHong Zhang        0,
138597304618SKris Buschelman        0,
138697304618SKris Buschelman        0,
138797304618SKris Buschelman        0,
138897304618SKris Buschelman /*75*/ 0,
138997304618SKris Buschelman        0,
139097304618SKris Buschelman        0,
139197304618SKris Buschelman        0,
139297304618SKris Buschelman        0,
139397304618SKris Buschelman /*80*/ 0,
139497304618SKris Buschelman        0,
139597304618SKris Buschelman        0,
139697304618SKris Buschelman        0,
1397865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1398865e5f61SKris Buschelman /*85*/ 0,
1399865e5f61SKris Buschelman        0,
1400865e5f61SKris Buschelman        0,
1401865e5f61SKris Buschelman        0,
1402865e5f61SKris Buschelman        0,
1403865e5f61SKris Buschelman /*90*/ 0,
1404865e5f61SKris Buschelman        0,
1405865e5f61SKris Buschelman        0,
1406865e5f61SKris Buschelman        0,
1407865e5f61SKris Buschelman        0,
1408865e5f61SKris Buschelman /*95*/ 0,
1409865e5f61SKris Buschelman        0,
1410865e5f61SKris Buschelman        0,
1411865e5f61SKris Buschelman        0};
1412a30f8f8cSSatish Balay 
1413a30f8f8cSSatish Balay 
1414a30f8f8cSSatish Balay EXTERN_C_BEGIN
14154a2ae208SSatish Balay #undef __FUNCT__
14164a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1417be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1418a30f8f8cSSatish Balay {
1419a30f8f8cSSatish Balay   PetscFunctionBegin;
1420a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1421a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1422a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1423a30f8f8cSSatish Balay }
1424a30f8f8cSSatish Balay EXTERN_C_END
1425a30f8f8cSSatish Balay 
1426273d9f13SBarry Smith EXTERN_C_BEGIN
14274a2ae208SSatish Balay #undef __FUNCT__
1428a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1429be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1430a23d5eceSKris Buschelman {
1431a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1432dfbe8321SBarry Smith   PetscErrorCode ierr;
14331302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1434a23d5eceSKris Buschelman 
1435a23d5eceSKris Buschelman   PetscFunctionBegin;
1436a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1437a23d5eceSKris Buschelman 
1438a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1439a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1440a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
144177431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
144277431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1443a23d5eceSKris Buschelman   if (d_nnz) {
1444a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
144577431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1446a23d5eceSKris Buschelman     }
1447a23d5eceSKris Buschelman   }
1448a23d5eceSKris Buschelman   if (o_nnz) {
1449a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
145077431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1451a23d5eceSKris Buschelman     }
1452a23d5eceSKris Buschelman   }
1453a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1454a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1455a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1456a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1457a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1458a23d5eceSKris Buschelman 
1459a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1460a23d5eceSKris Buschelman   mbs = B->m/bs;
1461a23d5eceSKris Buschelman   Mbs = B->M/bs;
1462a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
146377431f27SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->m,bs);
1464a23d5eceSKris Buschelman   }
1465a23d5eceSKris Buschelman 
1466521d7252SBarry Smith   B->bs  = bs;
1467a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1468a23d5eceSKris Buschelman   b->mbs = mbs;
1469a23d5eceSKris Buschelman   b->nbs = mbs;
1470a23d5eceSKris Buschelman   b->Mbs = Mbs;
1471a23d5eceSKris Buschelman   b->Nbs = Mbs;
1472a23d5eceSKris Buschelman 
1473a7cc72afSBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
1474a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1475a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1476a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1477a23d5eceSKris Buschelman   }
1478a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1479a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1480a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1481a23d5eceSKris Buschelman   b->cend      = b->rend;
1482a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1483a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1484a23d5eceSKris Buschelman   }
1485a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1486a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1487a23d5eceSKris Buschelman 
1488a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1489a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1490a23d5eceSKris Buschelman 
14919c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr);
14929c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1493c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
149452e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
14959c097c71SKris Buschelman 
14969c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr);
14974aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1498589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
149952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1500a23d5eceSKris Buschelman 
1501a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1502a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1503a23d5eceSKris Buschelman 
1504a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1505a23d5eceSKris Buschelman }
1506a23d5eceSKris Buschelman EXTERN_C_END
1507a23d5eceSKris Buschelman 
15080bad9183SKris Buschelman /*MC
1509fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
15100bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15110bad9183SKris Buschelman 
15120bad9183SKris Buschelman    Options Database Keys:
15130bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
15140bad9183SKris Buschelman 
15150bad9183SKris Buschelman   Level: beginner
15160bad9183SKris Buschelman 
15170bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
15180bad9183SKris Buschelman M*/
15190bad9183SKris Buschelman 
1520a23d5eceSKris Buschelman EXTERN_C_BEGIN
1521a23d5eceSKris Buschelman #undef __FUNCT__
15224a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1523be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1524b5df2d14SHong Zhang {
1525b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1526dfbe8321SBarry Smith   PetscErrorCode ierr;
1527b5df2d14SHong Zhang   PetscTruth     flg;
1528b5df2d14SHong Zhang 
1529b5df2d14SHong Zhang   PetscFunctionBegin;
1530b5df2d14SHong Zhang 
1531b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1532b0a32e0cSBarry Smith   B->data = (void*)b;
1533b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1534b5df2d14SHong Zhang 
1535b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1536b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1537b5df2d14SHong Zhang   B->mapping    = 0;
1538b5df2d14SHong Zhang   B->factor     = 0;
1539b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1540b5df2d14SHong Zhang 
1541b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1542b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1543b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1544b5df2d14SHong Zhang 
1545b5df2d14SHong Zhang   /* build local table of row and column ownerships */
15461302d50aSBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
1547273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1548273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
154952e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1550b5df2d14SHong Zhang 
1551b5df2d14SHong Zhang   /* build cache for off array entries formed */
1552b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1553b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1554b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1555b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1556b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1557b5df2d14SHong Zhang 
1558f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1559b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
156064a35ccbSBarry Smith   b->setvalueslen     = 0;
1561b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1562b5df2d14SHong Zhang #endif
1563b5df2d14SHong Zhang 
1564b5df2d14SHong Zhang   /* stuff used in block assembly */
1565b5df2d14SHong Zhang   b->barray       = 0;
1566b5df2d14SHong Zhang 
1567b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1568b5df2d14SHong Zhang   b->lvec         = 0;
1569b5df2d14SHong Zhang   b->Mvctx        = 0;
157040781036SHong Zhang   b->slvec0       = 0;
157140781036SHong Zhang   b->slvec0b      = 0;
157240781036SHong Zhang   b->slvec1       = 0;
157340781036SHong Zhang   b->slvec1a      = 0;
157440781036SHong Zhang   b->slvec1b      = 0;
157540781036SHong Zhang   b->sMvctx       = 0;
1576b5df2d14SHong Zhang 
1577b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1578b5df2d14SHong Zhang   b->rowindices   = 0;
1579b5df2d14SHong Zhang   b->rowvalues    = 0;
1580b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1581b5df2d14SHong Zhang 
1582b5df2d14SHong Zhang   /* hash table stuff */
1583b5df2d14SHong Zhang   b->ht           = 0;
1584b5df2d14SHong Zhang   b->hd           = 0;
1585b5df2d14SHong Zhang   b->ht_size      = 0;
1586b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1587b5df2d14SHong Zhang   b->ht_fact      = 0;
1588b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1589b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1590b5df2d14SHong Zhang 
1591e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1592b5df2d14SHong Zhang   if (flg) {
1593f6275e2eSBarry Smith     PetscReal fact = 1.39;
1594b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1595e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1596b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1597b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
159863ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
1599b5df2d14SHong Zhang   }
1600b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1601b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1602b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1603b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1604b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1605b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1606b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1607b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1608b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1609a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1610a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1611a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
161223ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
161323ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
161423ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
161523ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1616b5df2d14SHong Zhang   PetscFunctionReturn(0);
1617b5df2d14SHong Zhang }
1618273d9f13SBarry Smith EXTERN_C_END
1619b5df2d14SHong Zhang 
1620209238afSKris Buschelman /*MC
1621002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1622209238afSKris Buschelman 
1623209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1624209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1625209238afSKris Buschelman 
1626209238afSKris Buschelman    Options Database Keys:
1627209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1628209238afSKris Buschelman 
1629209238afSKris Buschelman   Level: beginner
1630209238afSKris Buschelman 
1631209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1632209238afSKris Buschelman M*/
1633209238afSKris Buschelman 
1634209238afSKris Buschelman EXTERN_C_BEGIN
1635209238afSKris Buschelman #undef __FUNCT__
1636209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1637be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1638dfbe8321SBarry Smith {
16396849ba73SBarry Smith   PetscErrorCode ierr;
16401302d50aSBarry Smith   PetscMPIInt    size;
1641209238afSKris Buschelman 
1642209238afSKris Buschelman   PetscFunctionBegin;
1643209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr);
1644209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1645209238afSKris Buschelman   if (size == 1) {
1646209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1647209238afSKris Buschelman   } else {
1648209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1649209238afSKris Buschelman   }
1650209238afSKris Buschelman   PetscFunctionReturn(0);
1651209238afSKris Buschelman }
1652209238afSKris Buschelman EXTERN_C_END
1653209238afSKris Buschelman 
16544a2ae208SSatish Balay #undef __FUNCT__
16554a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1656b5df2d14SHong Zhang /*@C
1657b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1658b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1659b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1660b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1661b5df2d14SHong Zhang 
1662b5df2d14SHong Zhang    Collective on Mat
1663b5df2d14SHong Zhang 
1664b5df2d14SHong Zhang    Input Parameters:
1665b5df2d14SHong Zhang +  A - the matrix
1666b5df2d14SHong Zhang .  bs   - size of blockk
1667b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1668b5df2d14SHong Zhang            submatrix  (same for all local rows)
1669b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
16706d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
16716d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
16726d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1673b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1674b5df2d14SHong Zhang            submatrix (same for all local rows).
1675b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1676b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1677b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1678b5df2d14SHong Zhang 
1679b5df2d14SHong Zhang 
1680b5df2d14SHong Zhang    Options Database Keys:
1681b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1682b5df2d14SHong Zhang                      block calculations (much slower)
1683b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1684b5df2d14SHong Zhang 
1685b5df2d14SHong Zhang    Notes:
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1688b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1689b5df2d14SHong Zhang 
169049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
169149a6f317SBarry Smith 
1692b5df2d14SHong Zhang    Storage Information:
1693b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1694b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1695b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1696b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1697b5df2d14SHong Zhang 
1698b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1699b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1700b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1701b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1702b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1703b5df2d14SHong Zhang 
1704b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1705b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1706b5df2d14SHong Zhang 
1707b5df2d14SHong Zhang .vb
1708b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1709b5df2d14SHong Zhang           -------------------
1710b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1711b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1712b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1713b5df2d14SHong Zhang           -------------------
1714b5df2d14SHong Zhang .ve
1715b5df2d14SHong Zhang 
1716b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1717b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
17186d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
17196d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1720b5df2d14SHong Zhang 
17216d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
17226d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1723b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1724b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1725b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1726b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1727b5df2d14SHong Zhang    matrices.
1728b5df2d14SHong Zhang 
1729b5df2d14SHong Zhang    Level: intermediate
1730b5df2d14SHong Zhang 
1731b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1732b5df2d14SHong Zhang 
1733b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1734b5df2d14SHong Zhang @*/
1735be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1736b5df2d14SHong Zhang {
17371302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1738b5df2d14SHong Zhang 
1739b5df2d14SHong Zhang   PetscFunctionBegin;
1740a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1741a23d5eceSKris Buschelman   if (f) {
1742a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1743b5df2d14SHong Zhang   }
1744b5df2d14SHong Zhang   PetscFunctionReturn(0);
1745b5df2d14SHong Zhang }
1746b5df2d14SHong Zhang 
17474a2ae208SSatish Balay #undef __FUNCT__
17484a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1749a30f8f8cSSatish Balay /*@C
1750a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1751a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1752a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1753a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1754a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1755a30f8f8cSSatish Balay 
1756a30f8f8cSSatish Balay    Collective on MPI_Comm
1757a30f8f8cSSatish Balay 
1758a30f8f8cSSatish Balay    Input Parameters:
1759a30f8f8cSSatish Balay +  comm - MPI communicator
1760a30f8f8cSSatish Balay .  bs   - size of blockk
1761a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1762a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1763a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1764a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1765a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1766a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1767a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1768a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1769a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1770a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1771a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
17726d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
17736d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
17746d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1775a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1776a30f8f8cSSatish Balay            submatrix (same for all local rows).
1777a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1778a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1779a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1780a30f8f8cSSatish Balay 
1781a30f8f8cSSatish Balay    Output Parameter:
1782a30f8f8cSSatish Balay .  A - the matrix
1783a30f8f8cSSatish Balay 
1784a30f8f8cSSatish Balay    Options Database Keys:
1785a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1786a30f8f8cSSatish Balay                      block calculations (much slower)
1787a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1788a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1789a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1790a30f8f8cSSatish Balay 
1791a30f8f8cSSatish Balay    Notes:
1792d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
1793d1be2dadSMatthew Knepley 
1794a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1795a30f8f8cSSatish Balay    (possibly both).
1796a30f8f8cSSatish Balay 
1797a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1798a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1799a30f8f8cSSatish Balay 
180049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
180149a6f317SBarry Smith 
1802a30f8f8cSSatish Balay    Storage Information:
1803a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1804a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1805a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1806a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1807a30f8f8cSSatish Balay 
1808a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1809a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1810a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1811a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1812a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1813a30f8f8cSSatish Balay 
1814a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1815a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1816a30f8f8cSSatish Balay 
1817a30f8f8cSSatish Balay .vb
1818a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1819a30f8f8cSSatish Balay           -------------------
1820a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1821a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1822a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1823a30f8f8cSSatish Balay           -------------------
1824a30f8f8cSSatish Balay .ve
1825a30f8f8cSSatish Balay 
1826a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1827a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
18286d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18296d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1830a30f8f8cSSatish Balay 
18316d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18326d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1833a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1834a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1835a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1836a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1837a30f8f8cSSatish Balay    matrices.
1838a30f8f8cSSatish Balay 
1839a30f8f8cSSatish Balay    Level: intermediate
1840a30f8f8cSSatish Balay 
1841a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1842a30f8f8cSSatish Balay 
1843a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1844a30f8f8cSSatish Balay @*/
1845a30f8f8cSSatish Balay 
1846be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1847a30f8f8cSSatish Balay {
18486849ba73SBarry Smith   PetscErrorCode ierr;
18491302d50aSBarry Smith   PetscMPIInt    size;
1850a30f8f8cSSatish Balay 
1851a30f8f8cSSatish Balay   PetscFunctionBegin;
1852b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1853273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1854273d9f13SBarry Smith   if (size > 1) {
1855b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1856b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1857273d9f13SBarry Smith   } else {
1858273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1859273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1860273d9f13SBarry Smith   }
1861a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1862a30f8f8cSSatish Balay }
1863a30f8f8cSSatish Balay 
1864a30f8f8cSSatish Balay 
18654a2ae208SSatish Balay #undef __FUNCT__
18664a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
18676849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1868a30f8f8cSSatish Balay {
1869a30f8f8cSSatish Balay   Mat            mat;
1870a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1871dfbe8321SBarry Smith   PetscErrorCode ierr;
1872521d7252SBarry Smith   PetscInt       len=0,nt,bs=matin->bs,mbs=oldmat->mbs;
1873387bc808SHong Zhang   PetscScalar    *array;
1874a30f8f8cSSatish Balay 
1875a30f8f8cSSatish Balay   PetscFunctionBegin;
1876a30f8f8cSSatish Balay   *newmat       = 0;
1877b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1878be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
18791d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1880e1b6402fSHong Zhang 
188182327fa8SHong Zhang   mat->factor       = matin->factor;
1882273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
188382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
18847fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
18857fff6886SHong Zhang 
1886b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1887521d7252SBarry Smith   mat->bs  = matin->bs;
1888a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
1889a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
1890a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
1891a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
1892a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
1893a30f8f8cSSatish Balay 
1894a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1895a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1896a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1897a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1898a30f8f8cSSatish Balay   a->size         = oldmat->size;
1899a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1900a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1901a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1902a30f8f8cSSatish Balay   a->rowindices   = 0;
1903a30f8f8cSSatish Balay   a->rowvalues    = 0;
1904a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1905a30f8f8cSSatish Balay   a->barray       = 0;
1906a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1907a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1908a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1909a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1910a30f8f8cSSatish Balay 
1911a30f8f8cSSatish Balay   /* hash table stuff */
1912a30f8f8cSSatish Balay   a->ht           = 0;
1913a30f8f8cSSatish Balay   a->hd           = 0;
1914a30f8f8cSSatish Balay   a->ht_size      = 0;
1915a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1916a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1917a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1918a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1919a30f8f8cSSatish Balay 
19201302d50aSBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
1921a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
1922521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
1923a30f8f8cSSatish Balay   if (oldmat->colmap) {
1924a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
1925a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1926a30f8f8cSSatish Balay #else
19271302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
192852e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
19291302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
1930a30f8f8cSSatish Balay #endif
1931a30f8f8cSSatish Balay   } else a->colmap = 0;
1932387bc808SHong Zhang 
1933a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
19341302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
193552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
19361302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
1937a30f8f8cSSatish Balay   } else a->garray = 0;
1938a30f8f8cSSatish Balay 
1939a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
194052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
1941a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
194252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
194382327fa8SHong Zhang 
194482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
194552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
194682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
194752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
1948387bc808SHong Zhang 
1949387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
19501ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
1951387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
1952387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
19531ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
19541ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
1955387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
19561ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
195752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
195852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
195952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
196052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
196152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
1962387bc808SHong Zhang 
1963387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
1964387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
1965387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
196652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
196782327fa8SHong Zhang 
1968a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
196952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1970a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
197152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
1972b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
1973a30f8f8cSSatish Balay   *newmat = mat;
1974a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1975a30f8f8cSSatish Balay }
1976a30f8f8cSSatish Balay 
1977a30f8f8cSSatish Balay #include "petscsys.h"
1978a30f8f8cSSatish Balay 
19794a2ae208SSatish Balay #undef __FUNCT__
19804a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
1981dfbe8321SBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
1982a30f8f8cSSatish Balay {
1983a30f8f8cSSatish Balay   Mat            A;
19846849ba73SBarry Smith   PetscErrorCode ierr;
198513f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
198687828ca2SBarry Smith   PetscScalar    *vals,*buf;
1987a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
1988a30f8f8cSSatish Balay   MPI_Status     status;
198913f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners;
199013f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
199113f74950SBarry Smith   PetscInt       *locrowlens,*procsnz = 0,jj,*mycols,*ibuf;
19921302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
19931302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
19941302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
199513f74950SBarry Smith   int            fd;
1996a30f8f8cSSatish Balay 
1997a30f8f8cSSatish Balay   PetscFunctionBegin;
1998b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2001a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2002a30f8f8cSSatish Balay   if (!rank) {
2003b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2004a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2005552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2006a30f8f8cSSatish Balay     if (header[3] < 0) {
200729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2008a30f8f8cSSatish Balay     }
2009a30f8f8cSSatish Balay   }
2010a30f8f8cSSatish Balay 
2011a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2012a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2013a30f8f8cSSatish Balay 
201429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2015a30f8f8cSSatish Balay 
2016a30f8f8cSSatish Balay   /*
2017a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2018a30f8f8cSSatish Balay      divisible by the blocksize
2019a30f8f8cSSatish Balay   */
2020a30f8f8cSSatish Balay   Mbs        = M/bs;
2021a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2022a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2023a30f8f8cSSatish Balay   else                  Mbs++;
2024a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
202563ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
2026a30f8f8cSSatish Balay   }
2027a30f8f8cSSatish Balay 
2028a30f8f8cSSatish Balay   /* determine ownership of all rows */
2029a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2030a30f8f8cSSatish Balay   m          = mbs*bs;
2031a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2032a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2033a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2034a30f8f8cSSatish Balay   rowners[0] = 0;
2035a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2036a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2037a30f8f8cSSatish Balay   rstart = rowners[rank];
2038a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2039a30f8f8cSSatish Balay 
2040a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
20411302d50aSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
2042a30f8f8cSSatish Balay   if (!rank) {
20431302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2044a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2045a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2046a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2047a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2048a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2049a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2050a30f8f8cSSatish Balay   } else {
2051a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2052a30f8f8cSSatish Balay   }
2053a30f8f8cSSatish Balay 
20540222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2055a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
20561302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
20571302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2058a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2059a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2060a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2061a30f8f8cSSatish Balay       }
2062a30f8f8cSSatish Balay     }
2063a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2064a30f8f8cSSatish Balay 
2065a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2066a30f8f8cSSatish Balay     maxnz = 0;
2067a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2068a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2069a30f8f8cSSatish Balay     }
20701302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2073a30f8f8cSSatish Balay     nz     = procsnz[0];
20741302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2075a30f8f8cSSatish Balay     mycols = ibuf;
2076a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2077a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2078a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2079a30f8f8cSSatish Balay 
2080a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2081a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2082a30f8f8cSSatish Balay       nz   = procsnz[i];
2083a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2084a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2085a30f8f8cSSatish Balay     }
2086a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2087a30f8f8cSSatish Balay     if (size != 1) {
2088a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2089a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2090a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2091a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2092a30f8f8cSSatish Balay     }
2093a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
20940222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2095a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2096a30f8f8cSSatish Balay     nz = 0;
2097a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2098a30f8f8cSSatish Balay       nz += locrowlens[i];
2099a30f8f8cSSatish Balay     }
21001302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay     mycols = ibuf;
2102a30f8f8cSSatish Balay     /* receive message of column indices*/
2103a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2104a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
210529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2106a30f8f8cSSatish Balay   }
2107a30f8f8cSSatish Balay 
2108a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
21091302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2110a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
21111302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
21121302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2113a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2114a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2115a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2116a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2117a30f8f8cSSatish Balay     dcount  = 0;
2118a30f8f8cSSatish Balay     odcount = 0;
2119a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2120a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2121a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21220222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2123a30f8f8cSSatish Balay         if (!mask[tmp]) {
2124a30f8f8cSSatish Balay           mask[tmp] = 1;
21250222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21260222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2127a30f8f8cSSatish Balay         }
2128a30f8f8cSSatish Balay       }
2129a30f8f8cSSatish Balay       rowcount++;
2130a30f8f8cSSatish Balay     }
2131a30f8f8cSSatish Balay 
21320222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21330222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2134a30f8f8cSSatish Balay 
2135a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2136a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2137a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2138a30f8f8cSSatish Balay   }
2139a30f8f8cSSatish Balay 
2140a30f8f8cSSatish Balay   /* create our matrix */
214122191285SKris Buschelman   ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr);
214222191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
214322191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2144273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2145a30f8f8cSSatish Balay 
2146a30f8f8cSSatish Balay   if (!rank) {
214787828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2149a30f8f8cSSatish Balay     nz = procsnz[0];
2150a30f8f8cSSatish Balay     vals = buf;
2151a30f8f8cSSatish Balay     mycols = ibuf;
2152a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2153a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2154a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2155a30f8f8cSSatish Balay 
2156a30f8f8cSSatish Balay     /* insert into matrix */
2157a30f8f8cSSatish Balay     jj      = rstart*bs;
2158a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
21597e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2160a30f8f8cSSatish Balay       mycols += locrowlens[i];
2161a30f8f8cSSatish Balay       vals   += locrowlens[i];
2162a30f8f8cSSatish Balay       jj++;
2163a30f8f8cSSatish Balay     }
21647e06b45fSHong Zhang 
2165a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2166a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2167a30f8f8cSSatish Balay       nz   = procsnz[i];
2168a30f8f8cSSatish Balay       vals = buf;
2169a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2170a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay     }
2172a30f8f8cSSatish Balay     /* the last proc */
2173a30f8f8cSSatish Balay     if (size != 1){
2174a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2175a30f8f8cSSatish Balay       vals = buf;
2176a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2177a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2178a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2179a30f8f8cSSatish Balay     }
2180a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
21817e06b45fSHong Zhang 
2182a30f8f8cSSatish Balay   } else {
2183a30f8f8cSSatish Balay     /* receive numeric values */
218487828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2185a30f8f8cSSatish Balay 
2186a30f8f8cSSatish Balay     /* receive message of values*/
2187a30f8f8cSSatish Balay     vals   = buf;
2188a30f8f8cSSatish Balay     mycols = ibuf;
2189a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2190a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
219129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2192a30f8f8cSSatish Balay 
2193a30f8f8cSSatish Balay     /* insert into matrix */
2194a30f8f8cSSatish Balay     jj      = rstart*bs;
2195a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2196a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2197a30f8f8cSSatish Balay       mycols += locrowlens[i];
2198a30f8f8cSSatish Balay       vals   += locrowlens[i];
2199a30f8f8cSSatish Balay       jj++;
2200a30f8f8cSSatish Balay     }
2201a30f8f8cSSatish Balay   }
22027e06b45fSHong Zhang 
2203a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2206a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
221122191285SKris Buschelman   *newmat = A;
2212a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2213a30f8f8cSSatish Balay }
2214a30f8f8cSSatish Balay 
22154a2ae208SSatish Balay #undef __FUNCT__
22164a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2217dcf5cc72SBarry Smith /*XXXXX@
2218a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2219a30f8f8cSSatish Balay 
2220a30f8f8cSSatish Balay    Input Parameters:
2221a30f8f8cSSatish Balay .  mat  - the matrix
2222a30f8f8cSSatish Balay .  fact - factor
2223a30f8f8cSSatish Balay 
2224a30f8f8cSSatish Balay    Collective on Mat
2225a30f8f8cSSatish Balay 
2226a30f8f8cSSatish Balay    Level: advanced
2227a30f8f8cSSatish Balay 
2228a30f8f8cSSatish Balay   Notes:
2229a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2230a30f8f8cSSatish Balay 
2231a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2232a30f8f8cSSatish Balay 
2233a30f8f8cSSatish Balay .seealso: MatSetOption()
2234dcf5cc72SBarry Smith @XXXXX*/
2235dcf5cc72SBarry Smith 
223624d5174aSHong Zhang 
22374a2ae208SSatish Balay #undef __FUNCT__
22384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
2239dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPISBAIJ(Mat A,Vec v)
224024d5174aSHong Zhang {
224124d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2242f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2243ca54ac64SHong Zhang   PetscReal      atmp;
224487828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2245dfbe8321SBarry Smith   PetscErrorCode ierr;
22461302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
22471302d50aSBarry Smith   PetscMPIInt    rank,size;
22481302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
224987828ca2SBarry Smith   PetscScalar    *va;
22508a1c53f2SBarry Smith   MatScalar      *ba;
2251f4c0e9e4SHong Zhang   MPI_Status     stat;
225224d5174aSHong Zhang 
225324d5174aSHong Zhang   PetscFunctionBegin;
2254d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
22551ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2256f4c0e9e4SHong Zhang 
225756faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
225856faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2259f4c0e9e4SHong Zhang 
2260521d7252SBarry Smith   bs   = A->bs;
2261f4c0e9e4SHong Zhang   mbs  = a->mbs;
2262f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2263f4c0e9e4SHong Zhang   ba   = b->a;
2264f4c0e9e4SHong Zhang   bi   = b->i;
2265f4c0e9e4SHong Zhang   bj   = b->j;
2266f4c0e9e4SHong Zhang 
2267f4c0e9e4SHong Zhang   /* find ownerships */
2268f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2269f4c0e9e4SHong Zhang 
2270f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
227182502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2272ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2273f4c0e9e4SHong Zhang 
2274f4c0e9e4SHong Zhang   /* row_max for B */
2275b8475685SHong Zhang   if (rank != size-1){
2276f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2277f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2278f4c0e9e4SHong Zhang       brow  = bs*i;
2279f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2280f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2281f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2282ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
228304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2284f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2285f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2286ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2287ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2288f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2289f4c0e9e4SHong Zhang           }
2290f4c0e9e4SHong Zhang         }
2291f4c0e9e4SHong Zhang         bj++;
2292f4c0e9e4SHong Zhang       }
2293f4c0e9e4SHong Zhang     }
2294f4c0e9e4SHong Zhang 
2295f4c0e9e4SHong Zhang     /* send values to its owners */
2296f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2297f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2298ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
229956faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2300ca54ac64SHong Zhang     }
2301f4c0e9e4SHong Zhang   }
2302f4c0e9e4SHong Zhang 
2303f4c0e9e4SHong Zhang   /* receive values */
2304ca54ac64SHong Zhang   if (rank){
2305f4c0e9e4SHong Zhang     rvalues = work;
2306ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2307f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
230856faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2309f4c0e9e4SHong Zhang       /* process values */
2310f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2311ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2312f4c0e9e4SHong Zhang       }
2313f4c0e9e4SHong Zhang     }
2314ca54ac64SHong Zhang   }
2315f4c0e9e4SHong Zhang 
23161ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2317ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
231824d5174aSHong Zhang   PetscFunctionReturn(0);
231924d5174aSHong Zhang }
23202798e883SHong Zhang 
23212798e883SHong Zhang #undef __FUNCT__
23222798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
23231302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
23242798e883SHong Zhang {
23252798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2326dfbe8321SBarry Smith   PetscErrorCode ierr;
2327521d7252SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->bs;
2328ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2329ffe4fb16SHong Zhang   Vec            bb1;
2330ffe4fb16SHong Zhang 
2331ffe4fb16SHong Zhang   PetscFunctionBegin;
233277431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2333ffe4fb16SHong Zhang   if (bs > 1)
2334ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2335ffe4fb16SHong Zhang 
2336ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2337ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2338ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2339ffe4fb16SHong Zhang       its--;
2340ffe4fb16SHong Zhang     }
2341ffe4fb16SHong Zhang 
2342ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2343ffe4fb16SHong Zhang     while (its--){
2344ffe4fb16SHong Zhang 
2345ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2346ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2347ffe4fb16SHong Zhang 
2348ffe4fb16SHong Zhang       /* copy xx into slvec0a */
23491ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
23501ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2351ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
23521ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2353ffe4fb16SHong Zhang 
2354ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2355ffe4fb16SHong Zhang 
2356ffe4fb16SHong Zhang       /* copy bb into slvec1a */
23571ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
23581ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2359ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
23601ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2361ffe4fb16SHong Zhang 
2362ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2363ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2364ffe4fb16SHong Zhang 
2365ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
23661ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
23671ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2368ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2369ffe4fb16SHong Zhang 
2370ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2371ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2372ffe4fb16SHong Zhang 
2373ffe4fb16SHong Zhang       /* local diagonal sweep */
2374ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2375ffe4fb16SHong Zhang     }
2376ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2377ffe4fb16SHong Zhang   } else {
2378ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2379ffe4fb16SHong Zhang   }
2380ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2381ffe4fb16SHong Zhang }
2382ffe4fb16SHong Zhang 
2383ffe4fb16SHong Zhang #undef __FUNCT__
2384ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
23851302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2386ffe4fb16SHong Zhang {
2387ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2388dfbe8321SBarry Smith   PetscErrorCode ierr;
2389d05c616dSSatish Balay   PetscScalar    mone=-1.0;
23902798e883SHong Zhang   Vec            lvec1,bb1;
23912798e883SHong Zhang 
23922798e883SHong Zhang   PetscFunctionBegin;
239377431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2394521d7252SBarry Smith   if (matin->bs > 1)
23952798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
23962798e883SHong Zhang 
2397c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
23982798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2399bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
24002798e883SHong Zhang       its--;
24012798e883SHong Zhang     }
24022798e883SHong Zhang 
24032798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
24042798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24052798e883SHong Zhang     while (its--){
24062798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24072798e883SHong Zhang 
24082798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
24092798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
24102798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
24112798e883SHong Zhang 
24122798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
24132798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
24142798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24152798e883SHong Zhang 
24162798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
24172798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
24182798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
24192798e883SHong Zhang 
24202798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
24212798e883SHong Zhang 
2422c14dc6b6SHong Zhang       /* diagonal sweep */
2423bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
24242798e883SHong Zhang     }
24252798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
24262798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2427c14dc6b6SHong Zhang   } else {
2428c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2429c14dc6b6SHong Zhang   }
24302798e883SHong Zhang   PetscFunctionReturn(0);
24312798e883SHong Zhang }
24322798e883SHong Zhang 
2433