xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision eeffb40d691afbdd57a8091619e7ddd44ac5fdca)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
169a30f8f8cSSatish Balay 
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
2610880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
2860880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2870880e062SHong Zhang         if ((roworiented) && (n == 1)) {
288f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2890880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
290f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2910880e062SHong Zhang         } else { /* Here a copy is required */
2920880e062SHong Zhang           if (roworiented) {
2930880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2940880e062SHong Zhang           } else {
2950880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2960880e062SHong Zhang           }
2970880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
2980880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
2990880e062SHong Zhang               *barray++  = *value++;
3000880e062SHong Zhang             }
3010880e062SHong Zhang           }
3020880e062SHong Zhang           barray -=bs2;
3030880e062SHong Zhang         }
3040880e062SHong Zhang 
3050880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3060880e062SHong Zhang           col  = in[j] - cstart;
3070880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3080880e062SHong Zhang         }
3090880e062SHong Zhang         else if (in[j] < 0) continue;
3102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3120880e062SHong Zhang #endif
3130880e062SHong Zhang         else {
3140880e062SHong Zhang           if (mat->was_assembled) {
3150880e062SHong Zhang             if (!baij->colmap) {
316653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3170880e062SHong Zhang             }
3180880e062SHong Zhang 
3192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3200880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3211302d50aSBarry Smith             { PetscInt data;
3220880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3230880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3240880e062SHong Zhang             }
3250880e062SHong Zhang #else
3260880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang #endif
3280880e062SHong Zhang #endif
3290880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3300880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3310880e062SHong Zhang             col  = (col - 1)/bs;
3320880e062SHong Zhang #else
3330880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3340880e062SHong Zhang #endif
3350880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3360880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3370880e062SHong Zhang               col =  in[j];
3380880e062SHong Zhang             }
3390880e062SHong Zhang           }
3400880e062SHong Zhang           else col = in[j];
341e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3420880e062SHong Zhang         }
3430880e062SHong Zhang       }
3440880e062SHong Zhang     } else {
3450880e062SHong Zhang       if (!baij->donotstash) {
3460880e062SHong Zhang         if (roworiented) {
3470880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3480880e062SHong Zhang         } else {
3490880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3500880e062SHong Zhang         }
3510880e062SHong Zhang       }
3520880e062SHong Zhang     }
3530880e062SHong Zhang   }
3540880e062SHong Zhang   PetscFunctionReturn(0);
355a30f8f8cSSatish Balay }
356a30f8f8cSSatish Balay 
3574a2ae208SSatish Balay #undef __FUNCT__
3584a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3591302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
360a30f8f8cSSatish Balay {
361f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3626849ba73SBarry Smith   PetscErrorCode ierr;
363d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
364d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
365a30f8f8cSSatish Balay 
366a30f8f8cSSatish Balay   PetscFunctionBegin;
367a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
36897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
369d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
370a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
371a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
372a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
374d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
375a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
376a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
377c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
378a30f8f8cSSatish Balay         } else {
379a30f8f8cSSatish Balay           if (!baij->colmap) {
380653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381a30f8f8cSSatish Balay           }
382a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
383a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           data --;
385a30f8f8cSSatish Balay #else
386a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
387a30f8f8cSSatish Balay #endif
388a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
389a30f8f8cSSatish Balay           else {
390a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
391e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
392a30f8f8cSSatish Balay           }
393a30f8f8cSSatish Balay         }
394a30f8f8cSSatish Balay       }
395a30f8f8cSSatish Balay     } else {
39629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
397a30f8f8cSSatish Balay     }
398a30f8f8cSSatish Balay   }
399a30f8f8cSSatish Balay  PetscFunctionReturn(0);
400a30f8f8cSSatish Balay }
401a30f8f8cSSatish Balay 
4024a2ae208SSatish Balay #undef __FUNCT__
4034a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
404dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
405a30f8f8cSSatish Balay {
406a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
407dfbe8321SBarry Smith   PetscErrorCode ierr;
408a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
409a30f8f8cSSatish Balay 
410a30f8f8cSSatish Balay   PetscFunctionBegin;
411a30f8f8cSSatish Balay   if (baij->size == 1) {
412a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
413a30f8f8cSSatish Balay   } else {
414a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
415f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
416a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
417a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
418a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4207adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
422a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4230b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4240b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4250b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4260b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
427899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
428d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4290b8dc8d2SHong Zhang       MatScalar    *v;
4300b8dc8d2SHong Zhang 
431d0f46423SBarry Smith       ierr  = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
432d0f46423SBarry Smith       rsum2 = rsum + mat->cmap->N;
433d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4340b8dc8d2SHong Zhang       /* Amat */
4350b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4360b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4370b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4380b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4390b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4400b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4410b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4420b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4430b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4440b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4450b8dc8d2SHong Zhang               /* non-diagonal block */
4460b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4470b8dc8d2SHong Zhang             }
4480b8dc8d2SHong Zhang           }
4490b8dc8d2SHong Zhang         }
4500b8dc8d2SHong Zhang       }
4510b8dc8d2SHong Zhang       /* Bmat */
4520b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4530b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4540b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4550b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4560b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4570b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4580b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4590b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4600b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4610b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4620b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4630b8dc8d2SHong Zhang             }
4640b8dc8d2SHong Zhang           }
4650b8dc8d2SHong Zhang         }
4660b8dc8d2SHong Zhang       }
467d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4680b8dc8d2SHong Zhang       *norm = 0.0;
469d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4700b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4710b8dc8d2SHong Zhang       }
4720b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
473a30f8f8cSSatish Balay     } else {
47429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
475a30f8f8cSSatish Balay     }
476a30f8f8cSSatish Balay   }
477a30f8f8cSSatish Balay   PetscFunctionReturn(0);
478a30f8f8cSSatish Balay }
479a30f8f8cSSatish Balay 
4804a2ae208SSatish Balay #undef __FUNCT__
4814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
482dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
483a30f8f8cSSatish Balay {
484a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
485dfbe8321SBarry Smith   PetscErrorCode ierr;
4861302d50aSBarry Smith   PetscInt       nstash,reallocs;
487a30f8f8cSSatish Balay   InsertMode     addv;
488a30f8f8cSSatish Balay 
489a30f8f8cSSatish Balay   PetscFunctionBegin;
490a30f8f8cSSatish Balay   if (baij->donotstash) {
491a30f8f8cSSatish Balay     PetscFunctionReturn(0);
492a30f8f8cSSatish Balay   }
493a30f8f8cSSatish Balay 
494a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4957adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
496a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
49729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
498a30f8f8cSSatish Balay   }
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
501d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
595a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
61532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
616fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
72832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
729fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
730b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
731fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
7351302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
778fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
779a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
797dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
798a9d4b620SHong Zhang {
799a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800dfbe8321SBarry Smith   PetscErrorCode ierr;
801d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802fa22f6d0SBarry Smith   PetscScalar    *x,*from;
803a9d4b620SHong Zhang 
804a9d4b620SHong Zhang   PetscFunctionBegin;
805a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806d0f46423SBarry Smith   if (nt != A->cmap->n) {
807a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
808a9d4b620SHong Zhang   }
809a9d4b620SHong Zhang 
810a9d4b620SHong Zhang   /* diagonal part */
811a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
812fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
813a9d4b620SHong Zhang 
814a9d4b620SHong Zhang   /* subdiagonal part */
815a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
816fc165ae2SBarry Smith 
817a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8181ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8191ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
820a9d4b620SHong Zhang 
821fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
822fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8231ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
824fc165ae2SBarry Smith 
825fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
826ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
827a9d4b620SHong Zhang   /* supperdiagonal part */
828a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
829a9d4b620SHong Zhang   PetscFunctionReturn(0);
830a9d4b620SHong Zhang }
831a9d4b620SHong Zhang 
832a9d4b620SHong Zhang #undef __FUNCT__
83340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
834dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
835a30f8f8cSSatish Balay {
836a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
837dfbe8321SBarry Smith   PetscErrorCode ierr;
8381302d50aSBarry Smith   PetscInt       nt;
839a30f8f8cSSatish Balay 
840a30f8f8cSSatish Balay   PetscFunctionBegin;
841a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
842d0f46423SBarry Smith   if (nt != A->cmap->n) {
84329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
844a30f8f8cSSatish Balay   }
845a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
846d0f46423SBarry Smith   if (nt != A->rmap->N) {
84729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
848a30f8f8cSSatish Balay   }
84965d70643SHong Zhang 
850ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
851b941877fSHong Zhang   /* do diagonal part */
852b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
853b941877fSHong Zhang   /* do supperdiagonal part */
854ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
855b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
856b941877fSHong Zhang   /* do subdiagonal part */
857b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
858ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
859ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
86065d70643SHong Zhang 
861a30f8f8cSSatish Balay   PetscFunctionReturn(0);
862a30f8f8cSSatish Balay }
863a30f8f8cSSatish Balay 
8644a2ae208SSatish Balay #undef __FUNCT__
8654a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
866dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
867a30f8f8cSSatish Balay {
868de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
869dfbe8321SBarry Smith   PetscErrorCode ierr;
870d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
871a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
872a9d4b620SHong Zhang 
873a9d4b620SHong Zhang   PetscFunctionBegin;
874a9d4b620SHong Zhang   /*
8757adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
8767adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
877a9d4b620SHong Zhang   */
878a9d4b620SHong Zhang   /* diagonal part */
879a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
8802dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
881a9d4b620SHong Zhang 
882a9d4b620SHong Zhang   /* subdiagonal part */
883a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
884a9d4b620SHong Zhang 
885a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8861ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8871ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
888a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
8891ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
890a9d4b620SHong Zhang 
891ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8921ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894a9d4b620SHong Zhang 
895a9d4b620SHong Zhang   /* supperdiagonal part */
896a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
897a9d4b620SHong Zhang 
898a9d4b620SHong Zhang   PetscFunctionReturn(0);
899a9d4b620SHong Zhang }
900a9d4b620SHong Zhang 
901a9d4b620SHong Zhang #undef __FUNCT__
902a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
903dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
904a9d4b620SHong Zhang {
905a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
906dfbe8321SBarry Smith   PetscErrorCode ierr;
907a30f8f8cSSatish Balay 
908a30f8f8cSSatish Balay   PetscFunctionBegin;
909ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
910b941877fSHong Zhang   /* do diagonal part */
911b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
912b941877fSHong Zhang   /* do supperdiagonal part */
913ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
914de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
915de8b6608SHong Zhang 
916b941877fSHong Zhang   /* do subdiagonal part */
917a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
918ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
919ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
920aa482183SHong Zhang 
921a30f8f8cSSatish Balay   PetscFunctionReturn(0);
922a30f8f8cSSatish Balay }
923a30f8f8cSSatish Balay 
924a30f8f8cSSatish Balay /*
925a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
926a30f8f8cSSatish Balay    diagonal block
927a30f8f8cSSatish Balay */
9284a2ae208SSatish Balay #undef __FUNCT__
9294a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
930dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
931a30f8f8cSSatish Balay {
932a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
933dfbe8321SBarry Smith   PetscErrorCode ierr;
934a30f8f8cSSatish Balay 
935a30f8f8cSSatish Balay   PetscFunctionBegin;
936d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
937a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
938a30f8f8cSSatish Balay   PetscFunctionReturn(0);
939a30f8f8cSSatish Balay }
940a30f8f8cSSatish Balay 
9414a2ae208SSatish Balay #undef __FUNCT__
9424a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
943f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
944a30f8f8cSSatish Balay {
945a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
946dfbe8321SBarry Smith   PetscErrorCode ierr;
947a30f8f8cSSatish Balay 
948a30f8f8cSSatish Balay   PetscFunctionBegin;
949f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
950f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
951a30f8f8cSSatish Balay   PetscFunctionReturn(0);
952a30f8f8cSSatish Balay }
953a30f8f8cSSatish Balay 
9544a2ae208SSatish Balay #undef __FUNCT__
9554a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9561302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
957a30f8f8cSSatish Balay {
958d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
959d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
960d0d4cfc2SHong Zhang   PetscErrorCode ierr;
961d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
962d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
963899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
964d0d4cfc2SHong Zhang 
965a30f8f8cSSatish Balay   PetscFunctionBegin;
9664eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
967d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
968d0d4cfc2SHong Zhang 
969d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
970d0d4cfc2SHong Zhang     /*
971d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
972d0d4cfc2SHong Zhang     */
973d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
974d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
975d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
976d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
977d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
978d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
979d0d4cfc2SHong Zhang     }
980d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
981d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
982d0d4cfc2SHong Zhang   }
983d0d4cfc2SHong Zhang 
984d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
985d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
986d0d4cfc2SHong Zhang 
987d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
988d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
989d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
990d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
991d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
992d0d4cfc2SHong Zhang   nztot = nzA + nzB;
993d0d4cfc2SHong Zhang 
994d0d4cfc2SHong Zhang   cmap  = mat->garray;
995d0d4cfc2SHong Zhang   if (v  || idx) {
996d0d4cfc2SHong Zhang     if (nztot) {
997d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
998d0d4cfc2SHong Zhang       PetscInt imark = -1;
999d0d4cfc2SHong Zhang       if (v) {
1000d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1001d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1002d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1003d0d4cfc2SHong Zhang           else break;
1004d0d4cfc2SHong Zhang         }
1005d0d4cfc2SHong Zhang         imark = i;
1006d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1007d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1008d0d4cfc2SHong Zhang       }
1009d0d4cfc2SHong Zhang       if (idx) {
1010d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1011d0d4cfc2SHong Zhang         if (imark > -1) {
1012d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1013d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1014d0d4cfc2SHong Zhang           }
1015d0d4cfc2SHong Zhang         } else {
1016d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1017d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1018d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1019d0d4cfc2SHong Zhang             else break;
1020d0d4cfc2SHong Zhang           }
1021d0d4cfc2SHong Zhang           imark = i;
1022d0d4cfc2SHong Zhang         }
1023d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1024d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1025d0d4cfc2SHong Zhang       }
1026d0d4cfc2SHong Zhang     } else {
1027d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1028d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1029d0d4cfc2SHong Zhang     }
1030d0d4cfc2SHong Zhang   }
1031d0d4cfc2SHong Zhang   *nz = nztot;
1032d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1033d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1034a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1035a30f8f8cSSatish Balay }
1036a30f8f8cSSatish Balay 
10374a2ae208SSatish Balay #undef __FUNCT__
10384a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10391302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1040a30f8f8cSSatish Balay {
1041a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1042a30f8f8cSSatish Balay 
1043a30f8f8cSSatish Balay   PetscFunctionBegin;
1044abc0a331SBarry Smith   if (!baij->getrowactive) {
1045abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1046a30f8f8cSSatish Balay   }
1047a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1048a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1049a30f8f8cSSatish Balay }
1050a30f8f8cSSatish Balay 
10514a2ae208SSatish Balay #undef __FUNCT__
1052d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1053d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1054d0d4cfc2SHong Zhang {
1055d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1056d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1057d0d4cfc2SHong Zhang 
1058d0d4cfc2SHong Zhang   PetscFunctionBegin;
1059d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1060d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1061d0d4cfc2SHong Zhang }
1062d0d4cfc2SHong Zhang #undef __FUNCT__
1063d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1064d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1065d0d4cfc2SHong Zhang {
1066d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1067d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1068d0d4cfc2SHong Zhang 
1069d0d4cfc2SHong Zhang   PetscFunctionBegin;
1070d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1071d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1072d0d4cfc2SHong Zhang }
1073d0d4cfc2SHong Zhang 
1074d0d4cfc2SHong Zhang #undef __FUNCT__
107599cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
107699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
107799cafbc1SBarry Smith {
107899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
107999cafbc1SBarry Smith   PetscErrorCode ierr;
108099cafbc1SBarry Smith 
108199cafbc1SBarry Smith   PetscFunctionBegin;
108299cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
108399cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
108499cafbc1SBarry Smith   PetscFunctionReturn(0);
108599cafbc1SBarry Smith }
108699cafbc1SBarry Smith 
108799cafbc1SBarry Smith #undef __FUNCT__
108899cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
108999cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
109099cafbc1SBarry Smith {
109199cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
109299cafbc1SBarry Smith   PetscErrorCode ierr;
109399cafbc1SBarry Smith 
109499cafbc1SBarry Smith   PetscFunctionBegin;
109599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
109699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
109799cafbc1SBarry Smith   PetscFunctionReturn(0);
109899cafbc1SBarry Smith }
109999cafbc1SBarry Smith 
110099cafbc1SBarry Smith #undef __FUNCT__
11014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1102dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1103a30f8f8cSSatish Balay {
1104a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1105dfbe8321SBarry Smith   PetscErrorCode ierr;
1106a30f8f8cSSatish Balay 
1107a30f8f8cSSatish Balay   PetscFunctionBegin;
1108a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1109a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1110a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1111a30f8f8cSSatish Balay }
1112a30f8f8cSSatish Balay 
11134a2ae208SSatish Balay #undef __FUNCT__
11144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1115dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1116a30f8f8cSSatish Balay {
1117a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1118a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1119dfbe8321SBarry Smith   PetscErrorCode ierr;
1120a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1121a30f8f8cSSatish Balay 
1122a30f8f8cSSatish Balay   PetscFunctionBegin;
1123d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1124a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1125a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1126a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1127a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1128a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1129a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1130a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1131a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1132a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1133a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1134a30f8f8cSSatish Balay     info->memory       = isend[3];
1135a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1136a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11377adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1138a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1139a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1140a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1141a30f8f8cSSatish Balay     info->memory       = irecv[3];
1142a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1143a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11447adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1145a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1146a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1147a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1148a30f8f8cSSatish Balay     info->memory       = irecv[3];
1149a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1150a30f8f8cSSatish Balay   } else {
115177431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1152a30f8f8cSSatish Balay   }
1153a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1154a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1155a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1156a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1157a30f8f8cSSatish Balay }
1158a30f8f8cSSatish Balay 
11594a2ae208SSatish Balay #undef __FUNCT__
11604a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11614e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1162a30f8f8cSSatish Balay {
1163a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1164d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1165dfbe8321SBarry Smith   PetscErrorCode ierr;
1166a30f8f8cSSatish Balay 
1167a30f8f8cSSatish Balay   PetscFunctionBegin;
1168e98b92d7SKris Buschelman   switch (op) {
1169512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1170e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
117128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1172a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1173e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
11744e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11754e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1176e98b92d7SKris Buschelman     break;
1177e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
11784e0d8c25SBarry Smith     a->roworiented = flg;
11794e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
11804e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1181e98b92d7SKris Buschelman     break;
11824e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1183290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1184e98b92d7SKris Buschelman     break;
1185e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
11864e0d8c25SBarry Smith     a->donotstash = flg;
1187e98b92d7SKris Buschelman     break;
1188e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
11894e0d8c25SBarry Smith     a->ht_flag = flg;
1190e98b92d7SKris Buschelman     break;
11919a4540c5SBarry Smith   case MAT_HERMITIAN:
1192*eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1193*eeffb40dSHong Zhang     break;
119477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1195*eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1196*eeffb40dSHong Zhang     break;
119777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1198*eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1199*eeffb40dSHong Zhang     break;
12009a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12014e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1202290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
120377e54ba9SKris Buschelman     break;
1204d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12054e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1206d0d4cfc2SHong Zhang     break;
1207d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12084e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1209d0d4cfc2SHong Zhang     break;
1210d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12114e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1212d0d4cfc2SHong Zhang     break;
1213e98b92d7SKris Buschelman   default:
1214ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1215a30f8f8cSSatish Balay   }
1216a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1217a30f8f8cSSatish Balay }
1218a30f8f8cSSatish Balay 
12194a2ae208SSatish Balay #undef __FUNCT__
12208115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1221fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1222a30f8f8cSSatish Balay {
1223dfbe8321SBarry Smith   PetscErrorCode ierr;
1224a30f8f8cSSatish Balay   PetscFunctionBegin;
1225815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1226999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1227fc4dec0aSBarry Smith   }
12288115998fSBarry Smith   PetscFunctionReturn(0);
1229a30f8f8cSSatish Balay }
1230a30f8f8cSSatish Balay 
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1233dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1234a30f8f8cSSatish Balay {
1235a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1236a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1237dfbe8321SBarry Smith   PetscErrorCode ierr;
12385e90f9d9SHong Zhang   PetscInt       nv,m,n;
1239b3bf805bSHong Zhang   PetscTruth     flg;
1240a30f8f8cSSatish Balay 
1241a30f8f8cSSatish Balay   PetscFunctionBegin;
1242a30f8f8cSSatish Balay   if (ll != rr){
1243b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1244b3bf805bSHong Zhang     if (!flg)
124529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1246a30f8f8cSSatish Balay   }
1247b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1248b3bf805bSHong Zhang 
12495e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12505e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1251b3bf805bSHong Zhang 
12525e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12535e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12545e90f9d9SHong Zhang 
1255ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12565e90f9d9SHong Zhang 
12575e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1258a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12595e90f9d9SHong Zhang 
12605e90f9d9SHong Zhang   /* scale the diagonal part */
1261a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1262a30f8f8cSSatish Balay 
12635e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1264ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1265a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1266a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1267a30f8f8cSSatish Balay }
1268a30f8f8cSSatish Balay 
12694a2ae208SSatish Balay #undef __FUNCT__
12704a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1271dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1272a30f8f8cSSatish Balay {
1273f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1274dfbe8321SBarry Smith   PetscErrorCode ierr;
1275a30f8f8cSSatish Balay 
1276a30f8f8cSSatish Balay   PetscFunctionBegin;
1277a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1278a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1279a30f8f8cSSatish Balay }
1280a30f8f8cSSatish Balay 
12816849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1282a30f8f8cSSatish Balay 
12834a2ae208SSatish Balay #undef __FUNCT__
12844a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1285dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1286a30f8f8cSSatish Balay {
1287a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1288a30f8f8cSSatish Balay   Mat            a,b,c,d;
1289a30f8f8cSSatish Balay   PetscTruth     flg;
1290dfbe8321SBarry Smith   PetscErrorCode ierr;
1291a30f8f8cSSatish Balay 
1292a30f8f8cSSatish Balay   PetscFunctionBegin;
1293a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1294a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1295a30f8f8cSSatish Balay 
1296a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1297abc0a331SBarry Smith   if (flg) {
1298a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1299a30f8f8cSSatish Balay   }
13007adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1301a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1302a30f8f8cSSatish Balay }
1303a30f8f8cSSatish Balay 
13044a2ae208SSatish Balay #undef __FUNCT__
13053c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13063c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13073c896bc6SHong Zhang {
13083c896bc6SHong Zhang   PetscErrorCode ierr;
13093c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13103c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13113c896bc6SHong Zhang 
13123c896bc6SHong Zhang   PetscFunctionBegin;
13133c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13143c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1315d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13163c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1317d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13183c896bc6SHong Zhang   } else {
13193c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13203c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13213c896bc6SHong Zhang   }
13223c896bc6SHong Zhang   PetscFunctionReturn(0);
13233c896bc6SHong Zhang }
13243c896bc6SHong Zhang 
13253c896bc6SHong Zhang #undef __FUNCT__
13264a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1327dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1328273d9f13SBarry Smith {
1329dfbe8321SBarry Smith   PetscErrorCode ierr;
1330273d9f13SBarry Smith 
1331273d9f13SBarry Smith   PetscFunctionBegin;
1332db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1333273d9f13SBarry Smith   PetscFunctionReturn(0);
1334273d9f13SBarry Smith }
1335a5e6ed63SBarry Smith 
13364fe895cdSHong Zhang #include "petscblaslapack.h"
13374fe895cdSHong Zhang #undef __FUNCT__
13384fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13394fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13404fe895cdSHong Zhang {
13414fe895cdSHong Zhang   PetscErrorCode ierr;
13424fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13434fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13444fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13454fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13464fe895cdSHong Zhang 
13474fe895cdSHong Zhang   PetscFunctionBegin;
13484fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13494fe895cdSHong Zhang     PetscScalar alpha = a;
13504fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13514fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13520805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13534fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13544fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13554fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13560805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13574fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13584fe895cdSHong Zhang   } else {
1359d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13604fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1361d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13624fe895cdSHong Zhang   }
13634fe895cdSHong Zhang   PetscFunctionReturn(0);
13644fe895cdSHong Zhang }
13654fe895cdSHong Zhang 
1366a5e6ed63SBarry Smith #undef __FUNCT__
1367a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
13681302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1369a5e6ed63SBarry Smith {
13706849ba73SBarry Smith   PetscErrorCode ierr;
13711302d50aSBarry Smith   PetscInt       i;
1372a5e6ed63SBarry Smith   PetscTruth     flg;
1373a5e6ed63SBarry Smith 
13746849ba73SBarry Smith   PetscFunctionBegin;
1375a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1376a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1377a5e6ed63SBarry Smith     if (!flg) {
13781302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1379a5e6ed63SBarry Smith     }
1380a5e6ed63SBarry Smith   }
1381a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1382a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1383a5e6ed63SBarry Smith }
1384a5e6ed63SBarry Smith 
1385a5e6ed63SBarry Smith 
1386a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1387a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1388a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1389a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1390a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1391a9d4b620SHong Zhang        MatMult_MPISBAIJ,
139297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1393431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1394431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1395a30f8f8cSSatish Balay        0,
1396a30f8f8cSSatish Balay        0,
1397a30f8f8cSSatish Balay        0,
139897304618SKris Buschelman /*10*/ 0,
1399a30f8f8cSSatish Balay        0,
1400a30f8f8cSSatish Balay        0,
140141f059aeSBarry Smith        MatSOR_MPISBAIJ,
1402a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
140397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1404a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1405a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1406a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1407a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
140897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1409a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1410a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1411a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1412d519adbfSMatthew Knepley /*24*/ 0,
1413a30f8f8cSSatish Balay        0,
1414a30f8f8cSSatish Balay        0,
1415a30f8f8cSSatish Balay        0,
1416a30f8f8cSSatish Balay        0,
1417d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1418b5df2d14SHong Zhang        0,
1419a30f8f8cSSatish Balay        0,
1420a30f8f8cSSatish Balay        0,
1421a30f8f8cSSatish Balay        0,
1422d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1423a30f8f8cSSatish Balay        0,
1424a30f8f8cSSatish Balay        0,
1425a30f8f8cSSatish Balay        0,
1426a30f8f8cSSatish Balay        0,
1427d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1428a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1429d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1430a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14313c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1432d519adbfSMatthew Knepley /*44*/ 0,
1433a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1434a30f8f8cSSatish Balay        0,
1435a30f8f8cSSatish Balay        0,
1436a30f8f8cSSatish Balay        0,
1437d519adbfSMatthew Knepley /*49*/ 0,
1438a30f8f8cSSatish Balay        0,
1439a30f8f8cSSatish Balay        0,
1440a30f8f8cSSatish Balay        0,
1441a30f8f8cSSatish Balay        0,
1442d519adbfSMatthew Knepley /*54*/ 0,
1443a30f8f8cSSatish Balay        0,
1444a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1445a30f8f8cSSatish Balay        0,
1446a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1447d519adbfSMatthew Knepley /*59*/ 0,
1448a30f8f8cSSatish Balay        0,
1449a30f8f8cSSatish Balay        0,
1450357abbc8SBarry Smith        0,
145124d5174aSHong Zhang        0,
1452d519adbfSMatthew Knepley /*64*/ 0,
145324d5174aSHong Zhang        0,
145424d5174aSHong Zhang        0,
145524d5174aSHong Zhang        0,
145624d5174aSHong Zhang        0,
1457d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
145824d5174aSHong Zhang        0,
145997304618SKris Buschelman        0,
146097304618SKris Buschelman        0,
146197304618SKris Buschelman        0,
1462d519adbfSMatthew Knepley /*74*/ 0,
146397304618SKris Buschelman        0,
146497304618SKris Buschelman        0,
146597304618SKris Buschelman        0,
146697304618SKris Buschelman        0,
1467d519adbfSMatthew Knepley /*79*/ 0,
146897304618SKris Buschelman        0,
146997304618SKris Buschelman        0,
147097304618SKris Buschelman        0,
1471865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1472d519adbfSMatthew Knepley /*84*/ 0,
1473865e5f61SKris Buschelman        0,
1474865e5f61SKris Buschelman        0,
1475865e5f61SKris Buschelman        0,
1476865e5f61SKris Buschelman        0,
1477d519adbfSMatthew Knepley /*89*/ 0,
1478865e5f61SKris Buschelman        0,
1479865e5f61SKris Buschelman        0,
1480865e5f61SKris Buschelman        0,
1481865e5f61SKris Buschelman        0,
1482d519adbfSMatthew Knepley /*94*/ 0,
1483865e5f61SKris Buschelman        0,
1484865e5f61SKris Buschelman        0,
148599cafbc1SBarry Smith        0,
148699cafbc1SBarry Smith        0,
1487d519adbfSMatthew Knepley /*99*/ 0,
148899cafbc1SBarry Smith        0,
148999cafbc1SBarry Smith        0,
149099cafbc1SBarry Smith        0,
149199cafbc1SBarry Smith        0,
1492d519adbfSMatthew Knepley /*104*/0,
149399cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1494d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1495d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1496d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
149799cafbc1SBarry Smith };
1498a30f8f8cSSatish Balay 
1499a30f8f8cSSatish Balay 
1500a30f8f8cSSatish Balay EXTERN_C_BEGIN
15014a2ae208SSatish Balay #undef __FUNCT__
15024a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1503be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1504a30f8f8cSSatish Balay {
1505a30f8f8cSSatish Balay   PetscFunctionBegin;
1506a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1507a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1508a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1509a30f8f8cSSatish Balay }
1510a30f8f8cSSatish Balay EXTERN_C_END
1511a30f8f8cSSatish Balay 
1512273d9f13SBarry Smith EXTERN_C_BEGIN
15134a2ae208SSatish Balay #undef __FUNCT__
1514a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1515be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1516a23d5eceSKris Buschelman {
1517a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1518dfbe8321SBarry Smith   PetscErrorCode ierr;
1519db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1520a23d5eceSKris Buschelman 
1521a23d5eceSKris Buschelman   PetscFunctionBegin;
1522db4efbfdSBarry Smith   if (bs < 0){
15237adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1524db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15258c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1526db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1527db4efbfdSBarry Smith   }
1528db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1529db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1530db4efbfdSBarry Smith   }
1531db4efbfdSBarry Smith   bs = newbs;
1532a23d5eceSKris Buschelman 
1533a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1534a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
153577431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
153677431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1537899cda47SBarry Smith 
1538d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
153926283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
154026283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1541899cda47SBarry Smith 
1542a23d5eceSKris Buschelman   if (d_nnz) {
1543d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
154477431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1545a23d5eceSKris Buschelman     }
1546a23d5eceSKris Buschelman   }
1547a23d5eceSKris Buschelman   if (o_nnz) {
1548d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
154977431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1550a23d5eceSKris Buschelman     }
1551a23d5eceSKris Buschelman   }
1552a23d5eceSKris Buschelman 
1553a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1554d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1555d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1556d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1557d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1558a23d5eceSKris Buschelman   }
1559a23d5eceSKris Buschelman 
1560d0f46423SBarry Smith   B->rmap->bs  = bs;
1561a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1562a23d5eceSKris Buschelman   b->mbs = mbs;
1563a23d5eceSKris Buschelman   b->nbs = mbs;
1564a23d5eceSKris Buschelman   b->Mbs = Mbs;
1565a23d5eceSKris Buschelman   b->Nbs = Mbs;
1566a23d5eceSKris Buschelman 
1567a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1568d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1569a23d5eceSKris Buschelman   }
1570d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1571d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1572a23d5eceSKris Buschelman 
1573d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1574d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1575a23d5eceSKris Buschelman 
1576526dfc15SBarry Smith   if (!B->preallocated) {
1577f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1578d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
15799c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
158052e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1581f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1582d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
15834aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
158452e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1585a23d5eceSKris Buschelman     /* build cache for off array entries formed */
15867adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1587526dfc15SBarry Smith   }
1588a23d5eceSKris Buschelman 
1589526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1590526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1591526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1592a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1593a23d5eceSKris Buschelman }
1594a23d5eceSKris Buschelman EXTERN_C_END
1595a23d5eceSKris Buschelman 
15965c9eb25fSBarry Smith EXTERN_C_BEGIN
1597611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1598611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1599611f576cSBarry Smith #endif
1600611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16015c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1602611f576cSBarry Smith #endif
1603b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1604b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1605b5e56a35SBarry Smith #endif
16065c9eb25fSBarry Smith EXTERN_C_END
16075c9eb25fSBarry Smith 
16080bad9183SKris Buschelman /*MC
1609fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16100bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16110bad9183SKris Buschelman 
16120bad9183SKris Buschelman    Options Database Keys:
16130bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16140bad9183SKris Buschelman 
16150bad9183SKris Buschelman   Level: beginner
16160bad9183SKris Buschelman 
16170bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16180bad9183SKris Buschelman M*/
16190bad9183SKris Buschelman 
1620a23d5eceSKris Buschelman EXTERN_C_BEGIN
1621a23d5eceSKris Buschelman #undef __FUNCT__
16224a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1623be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1624b5df2d14SHong Zhang {
1625b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1626dfbe8321SBarry Smith   PetscErrorCode ierr;
1627b5df2d14SHong Zhang   PetscTruth     flg;
1628b5df2d14SHong Zhang 
1629b5df2d14SHong Zhang   PetscFunctionBegin;
1630b5df2d14SHong Zhang 
163138f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1632b0a32e0cSBarry Smith   B->data = (void*)b;
1633b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1634b5df2d14SHong Zhang 
1635b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1636b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1637b5df2d14SHong Zhang   B->mapping         = 0;
1638b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1639b5df2d14SHong Zhang 
1640b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16417adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16427adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1643b5df2d14SHong Zhang 
1644b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1645899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1646b5df2d14SHong Zhang 
1647b5df2d14SHong Zhang   /* build cache for off array entries formed */
16487adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1649b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1650b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1651b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1652b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1653b5df2d14SHong Zhang 
1654b5df2d14SHong Zhang   /* stuff used in block assembly */
1655b5df2d14SHong Zhang   b->barray       = 0;
1656b5df2d14SHong Zhang 
1657b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1658b5df2d14SHong Zhang   b->lvec         = 0;
1659b5df2d14SHong Zhang   b->Mvctx        = 0;
166040781036SHong Zhang   b->slvec0       = 0;
166140781036SHong Zhang   b->slvec0b      = 0;
166240781036SHong Zhang   b->slvec1       = 0;
166340781036SHong Zhang   b->slvec1a      = 0;
166440781036SHong Zhang   b->slvec1b      = 0;
166540781036SHong Zhang   b->sMvctx       = 0;
1666b5df2d14SHong Zhang 
1667b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1668b5df2d14SHong Zhang   b->rowindices   = 0;
1669b5df2d14SHong Zhang   b->rowvalues    = 0;
1670b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1671b5df2d14SHong Zhang 
1672b5df2d14SHong Zhang   /* hash table stuff */
1673b5df2d14SHong Zhang   b->ht           = 0;
1674b5df2d14SHong Zhang   b->hd           = 0;
1675b5df2d14SHong Zhang   b->ht_size      = 0;
1676b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1677b5df2d14SHong Zhang   b->ht_fact      = 0;
1678b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1679b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1680b5df2d14SHong Zhang 
168159ffdab8SBarry Smith   b->in_loc       = 0;
168259ffdab8SBarry Smith   b->v_loc        = 0;
168359ffdab8SBarry Smith   b->n_loc        = 0;
16847adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
16858c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1686b5df2d14SHong Zhang     if (flg) {
1687f6275e2eSBarry Smith       PetscReal fact = 1.39;
16884e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
16898c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1690b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1691b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
16921e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1693b5df2d14SHong Zhang     }
16948c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
16958c07d4e3SBarry Smith 
1696b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1697ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1698b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1699b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1700b5e56a35SBarry Smith #endif
1701611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1702ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17035c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17045c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1705611f576cSBarry Smith #endif
1706611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1707ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17085c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17095c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1710611f576cSBarry Smith #endif
1711b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1712b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1713b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1714b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1715b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1716b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1717b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1718b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1719b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1720a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1721a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1722a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
172323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
172423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
172523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
172623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
172717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1728b5df2d14SHong Zhang   PetscFunctionReturn(0);
1729b5df2d14SHong Zhang }
1730273d9f13SBarry Smith EXTERN_C_END
1731b5df2d14SHong Zhang 
1732209238afSKris Buschelman /*MC
1733002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1734209238afSKris Buschelman 
1735209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1736209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1737209238afSKris Buschelman 
1738209238afSKris Buschelman    Options Database Keys:
1739209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1740209238afSKris Buschelman 
1741209238afSKris Buschelman   Level: beginner
1742209238afSKris Buschelman 
1743209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1744209238afSKris Buschelman M*/
1745209238afSKris Buschelman 
1746209238afSKris Buschelman EXTERN_C_BEGIN
1747209238afSKris Buschelman #undef __FUNCT__
1748209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1749be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1750dfbe8321SBarry Smith {
17516849ba73SBarry Smith   PetscErrorCode ierr;
17521302d50aSBarry Smith   PetscMPIInt    size;
1753209238afSKris Buschelman 
1754209238afSKris Buschelman   PetscFunctionBegin;
17557adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1756209238afSKris Buschelman   if (size == 1) {
1757209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1758209238afSKris Buschelman   } else {
1759209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1760209238afSKris Buschelman   }
1761209238afSKris Buschelman   PetscFunctionReturn(0);
1762209238afSKris Buschelman }
1763209238afSKris Buschelman EXTERN_C_END
1764209238afSKris Buschelman 
17654a2ae208SSatish Balay #undef __FUNCT__
17664a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1767b5df2d14SHong Zhang /*@C
1768b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1769b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1770b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1771b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1772b5df2d14SHong Zhang 
1773b5df2d14SHong Zhang    Collective on Mat
1774b5df2d14SHong Zhang 
1775b5df2d14SHong Zhang    Input Parameters:
1776b5df2d14SHong Zhang +  A - the matrix
1777b5df2d14SHong Zhang .  bs   - size of blockk
1778b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1779b5df2d14SHong Zhang            submatrix  (same for all local rows)
1780b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17816d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17826d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17836d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1784b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1785b5df2d14SHong Zhang            submatrix (same for all local rows).
1786b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1787b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1788b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1789b5df2d14SHong Zhang 
1790b5df2d14SHong Zhang 
1791b5df2d14SHong Zhang    Options Database Keys:
1792b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1793b5df2d14SHong Zhang                      block calculations (much slower)
1794b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1795b5df2d14SHong Zhang 
1796b5df2d14SHong Zhang    Notes:
1797b5df2d14SHong Zhang 
1798b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1799b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1800b5df2d14SHong Zhang 
180149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
180249a6f317SBarry Smith 
1803b5df2d14SHong Zhang    Storage Information:
1804b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1805b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1806b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1807b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1808b5df2d14SHong Zhang 
1809b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1810b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1811b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1812b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1813b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1814b5df2d14SHong Zhang 
1815aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1816aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1817aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1818aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1819aa95bbe8SBarry Smith 
1820b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1821b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1822b5df2d14SHong Zhang 
1823b5df2d14SHong Zhang .vb
1824b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1825b5df2d14SHong Zhang           -------------------
1826b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1827b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1828b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1829b5df2d14SHong Zhang           -------------------
1830b5df2d14SHong Zhang .ve
1831b5df2d14SHong Zhang 
1832b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1833b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18346d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18356d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1836b5df2d14SHong Zhang 
18376d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18386d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1839b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1840b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1841b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1842b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1843b5df2d14SHong Zhang    matrices.
1844b5df2d14SHong Zhang 
1845b5df2d14SHong Zhang    Level: intermediate
1846b5df2d14SHong Zhang 
1847b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1850b5df2d14SHong Zhang @*/
1851be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1852b5df2d14SHong Zhang {
18531302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1854b5df2d14SHong Zhang 
1855b5df2d14SHong Zhang   PetscFunctionBegin;
1856a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1857a23d5eceSKris Buschelman   if (f) {
1858a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1859b5df2d14SHong Zhang   }
1860b5df2d14SHong Zhang   PetscFunctionReturn(0);
1861b5df2d14SHong Zhang }
1862b5df2d14SHong Zhang 
18634a2ae208SSatish Balay #undef __FUNCT__
18644a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1865a30f8f8cSSatish Balay /*@C
1866a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1867a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1868a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1869a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1870a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1871a30f8f8cSSatish Balay 
1872a30f8f8cSSatish Balay    Collective on MPI_Comm
1873a30f8f8cSSatish Balay 
1874a30f8f8cSSatish Balay    Input Parameters:
1875a30f8f8cSSatish Balay +  comm - MPI communicator
1876a30f8f8cSSatish Balay .  bs   - size of blockk
1877a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1878a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1879a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1880a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1881a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1882a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1883a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1884a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1885a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1886a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1887a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18886d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18896d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18906d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1891a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1892a30f8f8cSSatish Balay            submatrix (same for all local rows).
1893a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1894a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1895a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1896a30f8f8cSSatish Balay 
1897a30f8f8cSSatish Balay    Output Parameter:
1898a30f8f8cSSatish Balay .  A - the matrix
1899a30f8f8cSSatish Balay 
1900a30f8f8cSSatish Balay    Options Database Keys:
1901a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1902a30f8f8cSSatish Balay                      block calculations (much slower)
1903a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1904a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1905a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1906a30f8f8cSSatish Balay 
1907175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1908ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1909175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1910175b88e8SBarry Smith 
1911a30f8f8cSSatish Balay    Notes:
1912d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19136d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1914d1be2dadSMatthew Knepley 
1915a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1916a30f8f8cSSatish Balay    (possibly both).
1917a30f8f8cSSatish Balay 
1918a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1919a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1920a30f8f8cSSatish Balay 
192149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
192249a6f317SBarry Smith 
1923a30f8f8cSSatish Balay    Storage Information:
1924a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1925a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1926a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1927a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1930a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1931a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1932a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1933a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1934a30f8f8cSSatish Balay 
1935a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1936a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay .vb
1939a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1940a30f8f8cSSatish Balay           -------------------
1941a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1942a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1943a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1944a30f8f8cSSatish Balay           -------------------
1945a30f8f8cSSatish Balay .ve
1946a30f8f8cSSatish Balay 
1947a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1948a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19496d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19506d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1951a30f8f8cSSatish Balay 
19526d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19536d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1954a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1955a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1956a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1957a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1958a30f8f8cSSatish Balay    matrices.
1959a30f8f8cSSatish Balay 
1960a30f8f8cSSatish Balay    Level: intermediate
1961a30f8f8cSSatish Balay 
1962a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1963a30f8f8cSSatish Balay 
1964a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1965a30f8f8cSSatish Balay @*/
1966a30f8f8cSSatish Balay 
1967be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
1968a30f8f8cSSatish Balay {
19696849ba73SBarry Smith   PetscErrorCode ierr;
19701302d50aSBarry Smith   PetscMPIInt    size;
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay   PetscFunctionBegin;
1973f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1974f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1975273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1976273d9f13SBarry Smith   if (size > 1) {
1977b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1978b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1979273d9f13SBarry Smith   } else {
1980273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1981273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1982273d9f13SBarry Smith   }
1983a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1984a30f8f8cSSatish Balay }
1985a30f8f8cSSatish Balay 
1986a30f8f8cSSatish Balay 
19874a2ae208SSatish Balay #undef __FUNCT__
19884a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
19896849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1990a30f8f8cSSatish Balay {
1991a30f8f8cSSatish Balay   Mat            mat;
1992a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1993dfbe8321SBarry Smith   PetscErrorCode ierr;
1994d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
1995387bc808SHong Zhang   PetscScalar    *array;
1996a30f8f8cSSatish Balay 
1997a30f8f8cSSatish Balay   PetscFunctionBegin;
1998a30f8f8cSSatish Balay   *newmat       = 0;
19997adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2000d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20017adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20021d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
200326283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
200426283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2005e1b6402fSHong Zhang 
200682327fa8SHong Zhang   mat->factor       = matin->factor;
2007273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
200882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20097fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20107fff6886SHong Zhang 
2011b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2012a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2013a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2014a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2015a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2016a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2017a30f8f8cSSatish Balay 
2018899cda47SBarry Smith 
2019a30f8f8cSSatish Balay   a->size         = oldmat->size;
2020a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2021a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2022a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2023a30f8f8cSSatish Balay   a->rowindices   = 0;
2024a30f8f8cSSatish Balay   a->rowvalues    = 0;
2025a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2026a30f8f8cSSatish Balay   a->barray       = 0;
2027899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2028899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2029899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2030899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2031a30f8f8cSSatish Balay 
2032a30f8f8cSSatish Balay   /* hash table stuff */
2033a30f8f8cSSatish Balay   a->ht           = 0;
2034a30f8f8cSSatish Balay   a->hd           = 0;
2035a30f8f8cSSatish Balay   a->ht_size      = 0;
2036a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2037a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2038a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2039a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2040a30f8f8cSSatish Balay 
2041899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
20427adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
2043d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2044a30f8f8cSSatish Balay   if (oldmat->colmap) {
2045a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2046a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2047a30f8f8cSSatish Balay #else
20481302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
204952e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20501302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2051a30f8f8cSSatish Balay #endif
2052a30f8f8cSSatish Balay   } else a->colmap = 0;
2053387bc808SHong Zhang 
2054a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20551302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
205652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20571302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2058a30f8f8cSSatish Balay   } else a->garray = 0;
2059a30f8f8cSSatish Balay 
2060a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
206152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2062a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
206352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
206482327fa8SHong Zhang 
206582327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
206652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
206782327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
206852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2069387bc808SHong Zhang 
2070387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
20711ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2072387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2073387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
20741ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
20751ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2076387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
20771ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
207852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
207952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
208052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
208152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
208252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2083387bc808SHong Zhang 
2084387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2085387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2086387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
208752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
208882327fa8SHong Zhang 
2089a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
209052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2091a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
209252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
20937adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2094a30f8f8cSSatish Balay   *newmat = mat;
2095a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2096a30f8f8cSSatish Balay }
2097a30f8f8cSSatish Balay 
2098a30f8f8cSSatish Balay #include "petscsys.h"
2099a30f8f8cSSatish Balay 
21004a2ae208SSatish Balay #undef __FUNCT__
21014a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2102a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2103a30f8f8cSSatish Balay {
2104a30f8f8cSSatish Balay   Mat            A;
21056849ba73SBarry Smith   PetscErrorCode ierr;
210613f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
210787828ca2SBarry Smith   PetscScalar    *vals,*buf;
2108a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2109a30f8f8cSSatish Balay   MPI_Status     status;
2110e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
211113f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21122fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21131302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21141302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21151302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
211613f74950SBarry Smith   int            fd;
2117a30f8f8cSSatish Balay 
2118a30f8f8cSSatish Balay   PetscFunctionBegin;
211977925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21208c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21218c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2122a30f8f8cSSatish Balay 
2123a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2124a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay   if (!rank) {
2126b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2127a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2128552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2129a30f8f8cSSatish Balay     if (header[3] < 0) {
213029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2131a30f8f8cSSatish Balay     }
2132a30f8f8cSSatish Balay   }
2133a30f8f8cSSatish Balay 
2134a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2135a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2136a30f8f8cSSatish Balay 
213729bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2138a30f8f8cSSatish Balay 
2139a30f8f8cSSatish Balay   /*
2140a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2141a30f8f8cSSatish Balay      divisible by the blocksize
2142a30f8f8cSSatish Balay   */
2143a30f8f8cSSatish Balay   Mbs        = M/bs;
2144a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2145a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2146a30f8f8cSSatish Balay   else                  Mbs++;
2147a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21481e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2149a30f8f8cSSatish Balay   }
2150a30f8f8cSSatish Balay 
2151a30f8f8cSSatish Balay   /* determine ownership of all rows */
2152a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2153a30f8f8cSSatish Balay   m          = mbs*bs;
2154a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2155a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2156e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2157e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2158a30f8f8cSSatish Balay   rowners[0] = 0;
2159a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2160a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2161a30f8f8cSSatish Balay   rstart = rowners[rank];
2162a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2163a30f8f8cSSatish Balay 
2164a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21652fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2166a30f8f8cSSatish Balay   if (!rank) {
21671302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2168a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2169a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2170a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2172a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2173a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2174a30f8f8cSSatish Balay   } else {
2175a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2176a30f8f8cSSatish Balay   }
2177a30f8f8cSSatish Balay 
21780222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2179a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
21801302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
21811302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2182a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2183a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2184a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2185a30f8f8cSSatish Balay       }
2186a30f8f8cSSatish Balay     }
2187a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2188a30f8f8cSSatish Balay 
2189a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2190a30f8f8cSSatish Balay     maxnz = 0;
2191a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2192a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2193a30f8f8cSSatish Balay     }
21941302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2195a30f8f8cSSatish Balay 
2196a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2197a30f8f8cSSatish Balay     nz     = procsnz[0];
21981302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2199a30f8f8cSSatish Balay     mycols = ibuf;
2200a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2201a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2203a30f8f8cSSatish Balay 
2204a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2205a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2206a30f8f8cSSatish Balay       nz   = procsnz[i];
2207a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2208a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay     }
2210a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2211a30f8f8cSSatish Balay     if (size != 1) {
2212a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2213a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2214a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2215a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2216a30f8f8cSSatish Balay     }
2217a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22180222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2219a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2220a30f8f8cSSatish Balay     nz = 0;
2221a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2222a30f8f8cSSatish Balay       nz += locrowlens[i];
2223a30f8f8cSSatish Balay     }
22241302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     mycols = ibuf;
2226a30f8f8cSSatish Balay     /* receive message of column indices*/
2227a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2228a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
222929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2230a30f8f8cSSatish Balay   }
2231a30f8f8cSSatish Balay 
2232a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22331302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2234a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22351302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22361302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2237a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2238a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2239a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2240a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2241a30f8f8cSSatish Balay     dcount  = 0;
2242a30f8f8cSSatish Balay     odcount = 0;
2243a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2244a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2245a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22460222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2247a30f8f8cSSatish Balay         if (!mask[tmp]) {
2248a30f8f8cSSatish Balay           mask[tmp] = 1;
22490222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22500222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2251a30f8f8cSSatish Balay         }
2252a30f8f8cSSatish Balay       }
2253a30f8f8cSSatish Balay       rowcount++;
2254a30f8f8cSSatish Balay     }
2255a30f8f8cSSatish Balay 
22560222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22570222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2258a30f8f8cSSatish Balay 
2259a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2260a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2261a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2262a30f8f8cSSatish Balay   }
2263a30f8f8cSSatish Balay 
2264a30f8f8cSSatish Balay   /* create our matrix */
2265f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2266f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
226722191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
226817fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
226922191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay 
2271a30f8f8cSSatish Balay   if (!rank) {
227287828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2273a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2274a30f8f8cSSatish Balay     nz = procsnz[0];
2275a30f8f8cSSatish Balay     vals = buf;
2276a30f8f8cSSatish Balay     mycols = ibuf;
2277a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2278a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2279a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2280a30f8f8cSSatish Balay 
2281a30f8f8cSSatish Balay     /* insert into matrix */
2282a30f8f8cSSatish Balay     jj      = rstart*bs;
2283a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22847e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2285a30f8f8cSSatish Balay       mycols += locrowlens[i];
2286a30f8f8cSSatish Balay       vals   += locrowlens[i];
2287a30f8f8cSSatish Balay       jj++;
2288a30f8f8cSSatish Balay     }
22897e06b45fSHong Zhang 
2290a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2291a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2292a30f8f8cSSatish Balay       nz   = procsnz[i];
2293a30f8f8cSSatish Balay       vals = buf;
2294a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
22957adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2296a30f8f8cSSatish Balay     }
2297a30f8f8cSSatish Balay     /* the last proc */
2298a30f8f8cSSatish Balay     if (size != 1){
2299a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2300a30f8f8cSSatish Balay       vals = buf;
2301a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2302a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23037adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2304a30f8f8cSSatish Balay     }
2305a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23067e06b45fSHong Zhang 
2307a30f8f8cSSatish Balay   } else {
2308a30f8f8cSSatish Balay     /* receive numeric values */
230987828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2310a30f8f8cSSatish Balay 
2311a30f8f8cSSatish Balay     /* receive message of values*/
2312a30f8f8cSSatish Balay     vals   = buf;
2313a30f8f8cSSatish Balay     mycols = ibuf;
23147adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2315a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
231629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2317a30f8f8cSSatish Balay 
2318a30f8f8cSSatish Balay     /* insert into matrix */
2319a30f8f8cSSatish Balay     jj      = rstart*bs;
2320a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2321a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2322a30f8f8cSSatish Balay       mycols += locrowlens[i];
2323a30f8f8cSSatish Balay       vals   += locrowlens[i];
2324a30f8f8cSSatish Balay       jj++;
2325a30f8f8cSSatish Balay     }
2326a30f8f8cSSatish Balay   }
23277e06b45fSHong Zhang 
2328a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2329a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2330a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2331a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2332a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2333a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2334a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233622191285SKris Buschelman   *newmat = A;
2337a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2338a30f8f8cSSatish Balay }
2339a30f8f8cSSatish Balay 
23404a2ae208SSatish Balay #undef __FUNCT__
23414a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2342dcf5cc72SBarry Smith /*XXXXX@
2343a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2344a30f8f8cSSatish Balay 
2345a30f8f8cSSatish Balay    Input Parameters:
2346a30f8f8cSSatish Balay .  mat  - the matrix
2347a30f8f8cSSatish Balay .  fact - factor
2348a30f8f8cSSatish Balay 
2349a30f8f8cSSatish Balay    Collective on Mat
2350a30f8f8cSSatish Balay 
2351a30f8f8cSSatish Balay    Level: advanced
2352a30f8f8cSSatish Balay 
2353a30f8f8cSSatish Balay   Notes:
2354a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2355a30f8f8cSSatish Balay 
2356a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2357a30f8f8cSSatish Balay 
2358a30f8f8cSSatish Balay .seealso: MatSetOption()
2359dcf5cc72SBarry Smith @XXXXX*/
2360dcf5cc72SBarry Smith 
236124d5174aSHong Zhang 
23624a2ae208SSatish Balay #undef __FUNCT__
2363985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2364985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
236524d5174aSHong Zhang {
236624d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2367f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2368ca54ac64SHong Zhang   PetscReal      atmp;
236987828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2370dfbe8321SBarry Smith   PetscErrorCode ierr;
23711302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
23721302d50aSBarry Smith   PetscMPIInt    rank,size;
23731302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
237487828ca2SBarry Smith   PetscScalar    *va;
23758a1c53f2SBarry Smith   MatScalar      *ba;
2376f4c0e9e4SHong Zhang   MPI_Status     stat;
237724d5174aSHong Zhang 
237824d5174aSHong Zhang   PetscFunctionBegin;
2379985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2380985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
23811ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2382f4c0e9e4SHong Zhang 
23837adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
23847adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2385f4c0e9e4SHong Zhang 
2386d0f46423SBarry Smith   bs   = A->rmap->bs;
2387f4c0e9e4SHong Zhang   mbs  = a->mbs;
2388f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2389f4c0e9e4SHong Zhang   ba   = b->a;
2390f4c0e9e4SHong Zhang   bi   = b->i;
2391f4c0e9e4SHong Zhang   bj   = b->j;
2392f4c0e9e4SHong Zhang 
2393f4c0e9e4SHong Zhang   /* find ownerships */
2394d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2395f4c0e9e4SHong Zhang 
2396f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
239782502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2398ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2399f4c0e9e4SHong Zhang 
2400f4c0e9e4SHong Zhang   /* row_max for B */
2401b8475685SHong Zhang   if (rank != size-1){
2402f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2403f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2404f4c0e9e4SHong Zhang       brow  = bs*i;
2405f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2406f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2407f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2408ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
240904d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2410f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2411f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2412ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2413ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2414f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2415f4c0e9e4SHong Zhang           }
2416f4c0e9e4SHong Zhang         }
2417f4c0e9e4SHong Zhang         bj++;
2418f4c0e9e4SHong Zhang       }
2419f4c0e9e4SHong Zhang     }
2420f4c0e9e4SHong Zhang 
2421f4c0e9e4SHong Zhang     /* send values to its owners */
2422f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2423f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2424ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24257adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2426ca54ac64SHong Zhang     }
2427f4c0e9e4SHong Zhang   }
2428f4c0e9e4SHong Zhang 
2429f4c0e9e4SHong Zhang   /* receive values */
2430ca54ac64SHong Zhang   if (rank){
2431f4c0e9e4SHong Zhang     rvalues = work;
2432ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2433f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24347adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2435f4c0e9e4SHong Zhang       /* process values */
2436f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2437ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2438f4c0e9e4SHong Zhang       }
2439f4c0e9e4SHong Zhang     }
2440ca54ac64SHong Zhang   }
2441f4c0e9e4SHong Zhang 
24421ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2443ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
244424d5174aSHong Zhang   PetscFunctionReturn(0);
244524d5174aSHong Zhang }
24462798e883SHong Zhang 
24472798e883SHong Zhang #undef __FUNCT__
244841f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
244941f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24502798e883SHong Zhang {
24512798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2452dfbe8321SBarry Smith   PetscErrorCode ierr;
2453d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2454fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2455ffe4fb16SHong Zhang   Vec            bb1;
2456ffe4fb16SHong Zhang 
2457ffe4fb16SHong Zhang   PetscFunctionBegin;
245877431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2459b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2460ffe4fb16SHong Zhang 
2461a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
246241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2463a2b30743SBarry Smith     PetscFunctionReturn(0);
2464a2b30743SBarry Smith   }
2465a2b30743SBarry Smith 
2466ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2467ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
246841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2469ffe4fb16SHong Zhang       its--;
2470ffe4fb16SHong Zhang     }
2471ffe4fb16SHong Zhang 
2472ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2473ffe4fb16SHong Zhang     while (its--){
2474ffe4fb16SHong Zhang 
2475ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2476ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2477ffe4fb16SHong Zhang 
2478ffe4fb16SHong Zhang       /* copy xx into slvec0a */
24791ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
24801ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2481ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24821ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2483ffe4fb16SHong Zhang 
2484efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2485ffe4fb16SHong Zhang 
2486ffe4fb16SHong Zhang       /* copy bb into slvec1a */
24871ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
24881ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2489ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
24901ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2491ffe4fb16SHong Zhang 
2492ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2493fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2494ffe4fb16SHong Zhang 
2495ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
24961ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
24971ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2498ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2499ffe4fb16SHong Zhang 
2500ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2501ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2502ffe4fb16SHong Zhang 
2503ffe4fb16SHong Zhang       /* local diagonal sweep */
250441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2505ffe4fb16SHong Zhang     }
2506ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2507fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
250841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2509fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
251041f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2511fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2512fa22f6d0SBarry Smith     Vec               xx1;
2513fa22f6d0SBarry Smith     PetscTruth        hasop;
251420f1ed55SBarry Smith     const PetscScalar *diag;
2515887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
251620f1ed55SBarry Smith     PetscInt          i,n;
2517fa22f6d0SBarry Smith 
2518fa22f6d0SBarry Smith     if (!mat->xx1) {
2519fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2520fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2521fa22f6d0SBarry Smith     }
2522fa22f6d0SBarry Smith     xx1 = mat->xx1;
2523fa22f6d0SBarry Smith     bb1 = mat->bb1;
2524fa22f6d0SBarry Smith 
252541f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2526fa22f6d0SBarry Smith 
2527fa22f6d0SBarry Smith     if (!mat->diag) {
2528effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2529fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2530fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2531fa22f6d0SBarry Smith     }
2532fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2533fa22f6d0SBarry Smith 
2534fa22f6d0SBarry Smith     if (hasop) {
2535fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2536887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
253720f1ed55SBarry Smith     } else {
253820f1ed55SBarry Smith       /*
253920f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
254020f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2541887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
254220f1ed55SBarry Smith       */
254320f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
254420f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
254520f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
254620f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
254720f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2548887ee2caSBarry Smith       if (omega == 1.0) {
254920f1ed55SBarry Smith 	for (i=0; i<n; i++) {
255020f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
255120f1ed55SBarry Smith 	}
255220f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2553887ee2caSBarry Smith       } else {
2554887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2555887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2556887ee2caSBarry Smith 	}
2557887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2558887ee2caSBarry Smith       }
255920f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
256020f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
256120f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
256220f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
256320f1ed55SBarry Smith     }
2564fa22f6d0SBarry Smith 
2565fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2566fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2567fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2568fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2569fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2570fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2571fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2572fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2573fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2574fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2575effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2576fa22f6d0SBarry Smith 
2577fa22f6d0SBarry Smith     /* local sweep */
257841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2579fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2580ffe4fb16SHong Zhang   } else {
2581ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2582ffe4fb16SHong Zhang   }
2583ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2584ffe4fb16SHong Zhang }
2585ffe4fb16SHong Zhang 
2586ffe4fb16SHong Zhang #undef __FUNCT__
258741f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
258841f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2589ffe4fb16SHong Zhang {
2590ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2591dfbe8321SBarry Smith   PetscErrorCode ierr;
25922798e883SHong Zhang   Vec            lvec1,bb1;
25932798e883SHong Zhang 
25942798e883SHong Zhang   PetscFunctionBegin;
259577431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2596b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25972798e883SHong Zhang 
2598c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25992798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
260041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26012798e883SHong Zhang       its--;
26022798e883SHong Zhang     }
26032798e883SHong Zhang 
26042798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26052798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26062798e883SHong Zhang     while (its--){
2607ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26082798e883SHong Zhang 
26092798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26102798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2611efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26122798e883SHong Zhang 
2613ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26142798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2615ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26162798e883SHong Zhang 
26172798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2618efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26192798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26202798e883SHong Zhang 
2621ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26222798e883SHong Zhang 
2623c14dc6b6SHong Zhang       /* diagonal sweep */
262441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26252798e883SHong Zhang     }
26262798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26272798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2628c14dc6b6SHong Zhang   } else {
2629c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2630c14dc6b6SHong Zhang   }
26312798e883SHong Zhang   PetscFunctionReturn(0);
26322798e883SHong Zhang }
26332798e883SHong Zhang 
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