xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision f15d580ab8a8aa4764877ea4d73c9e0d44a8b2c1)
173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h"
5a30f8f8cSSatish Balay #include "mpisbaij.h"
6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
7a30f8f8cSSatish Balay 
8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat);
940781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat);
11*f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []);
12*f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode);
13*f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode);
1487828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
1587828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**);
16a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat);
1787828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
1887828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
19d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec);
20c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);
21a30f8f8cSSatish Balay 
22a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2387828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
24a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
25a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
26a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
27a30f8f8cSSatish Balay    into the single precision data structures.
28a30f8f8cSSatish Balay */
29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
30*f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
31*f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
32*f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
33*f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
34*f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode);
35a30f8f8cSSatish Balay #else
36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
41a30f8f8cSSatish Balay #endif
42a30f8f8cSSatish Balay 
43a30f8f8cSSatish Balay EXTERN_C_BEGIN
444a2ae208SSatish Balay #undef __FUNCT__
454a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat)
47a30f8f8cSSatish Balay {
48f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
49a30f8f8cSSatish Balay   int          ierr;
50a30f8f8cSSatish Balay 
51a30f8f8cSSatish Balay   PetscFunctionBegin;
52a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   PetscFunctionReturn(0);
55a30f8f8cSSatish Balay }
56a30f8f8cSSatish Balay EXTERN_C_END
57a30f8f8cSSatish Balay 
58a30f8f8cSSatish Balay EXTERN_C_BEGIN
594a2ae208SSatish Balay #undef __FUNCT__
604a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat)
62a30f8f8cSSatish Balay {
63f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
64a30f8f8cSSatish Balay   int          ierr;
65a30f8f8cSSatish Balay 
66a30f8f8cSSatish Balay   PetscFunctionBegin;
67a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   PetscFunctionReturn(0);
70a30f8f8cSSatish Balay }
71a30f8f8cSSatish Balay EXTERN_C_END
72a30f8f8cSSatish Balay 
73a30f8f8cSSatish Balay /*
74a30f8f8cSSatish Balay      Local utility routine that creates a mapping from the global column
75a30f8f8cSSatish Balay    number to the local number in the off-diagonal part of the local
76a30f8f8cSSatish Balay    storage of the matrix.  This is done in a non scable way since the
77a30f8f8cSSatish Balay    length of colmap equals the global matrix length.
78a30f8f8cSSatish Balay */
794a2ae208SSatish Balay #undef __FUNCT__
804a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPISBAIJ_Private"
81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat)
82a30f8f8cSSatish Balay {
83a30f8f8cSSatish Balay   PetscFunctionBegin;
8429bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
8596e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
86a30f8f8cSSatish Balay }
87a30f8f8cSSatish Balay 
88a30f8f8cSSatish Balay #define CHUNKSIZE  10
89a30f8f8cSSatish Balay 
90a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
91a30f8f8cSSatish Balay { \
92a30f8f8cSSatish Balay  \
93a30f8f8cSSatish Balay     brow = row/bs;  \
94a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
95a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
96a30f8f8cSSatish Balay       bcol = col/bs; \
97a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
98a30f8f8cSSatish Balay       low = 0; high = nrow; \
99a30f8f8cSSatish Balay       while (high-low > 3) { \
100a30f8f8cSSatish Balay         t = (low+high)/2; \
101a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
102a30f8f8cSSatish Balay         else              low  = t; \
103a30f8f8cSSatish Balay       } \
104a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
105a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
106a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
107a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
108a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
109a30f8f8cSSatish Balay           else                    *bap  = value;  \
110a30f8f8cSSatish Balay           goto a_noinsert; \
111a30f8f8cSSatish Balay         } \
112a30f8f8cSSatish Balay       } \
113a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
11429bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
115a30f8f8cSSatish Balay       if (nrow >= rmax) { \
116a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
117a30f8f8cSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
118a30f8f8cSSatish Balay         MatScalar *new_a; \
119a30f8f8cSSatish Balay  \
12029bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
121a30f8f8cSSatish Balay  \
122a30f8f8cSSatish Balay         /* malloc new storage space */ \
123a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
12482502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
125a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
126a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
127a30f8f8cSSatish Balay  \
128a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
129a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
130a30f8f8cSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
131a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
132a30f8f8cSSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
133a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
134a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13587828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
136a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
137a30f8f8cSSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
138a30f8f8cSSatish Balay         /* free up old matrix storage */ \
139a30f8f8cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
140a30f8f8cSSatish Balay         if (!a->singlemalloc) { \
141a30f8f8cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
142a30f8f8cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
143a30f8f8cSSatish Balay         } \
144a30f8f8cSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
145a30f8f8cSSatish Balay         a->singlemalloc = PETSC_TRUE; \
146a30f8f8cSSatish Balay  \
147a30f8f8cSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
148a30f8f8cSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
149b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
150a30f8f8cSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE; \
151a30f8f8cSSatish Balay         a->reallocs++; \
152a30f8f8cSSatish Balay         a->s_nz++; \
153a30f8f8cSSatish Balay       } \
154a30f8f8cSSatish Balay       N = nrow++ - 1;  \
155a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
156a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
157a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
158a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
159a30f8f8cSSatish Balay       } \
160a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
161a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
162a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
163a30f8f8cSSatish Balay       a_noinsert:; \
164a30f8f8cSSatish Balay     ailen[brow] = nrow; \
165a30f8f8cSSatish Balay }
166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
167a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
168a30f8f8cSSatish Balay { \
169a30f8f8cSSatish Balay     brow = row/bs;  \
170a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
171a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
172a30f8f8cSSatish Balay       bcol = col/bs; \
173a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
174a30f8f8cSSatish Balay       low = 0; high = nrow; \
175a30f8f8cSSatish Balay       while (high-low > 3) { \
176a30f8f8cSSatish Balay         t = (low+high)/2; \
177a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
178a30f8f8cSSatish Balay         else              low  = t; \
179a30f8f8cSSatish Balay       } \
180a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
181a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
182a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
183a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
184a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
185a30f8f8cSSatish Balay           else                    *bap  = value;  \
186a30f8f8cSSatish Balay           goto b_noinsert; \
187a30f8f8cSSatish Balay         } \
188a30f8f8cSSatish Balay       } \
189a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
19029bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
191a30f8f8cSSatish Balay       if (nrow >= rmax) { \
192a30f8f8cSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
193a30f8f8cSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
194a30f8f8cSSatish Balay         MatScalar *new_a; \
195a30f8f8cSSatish Balay  \
19629bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
197a30f8f8cSSatish Balay  \
198a30f8f8cSSatish Balay         /* malloc new storage space */ \
199a30f8f8cSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
20082502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
201a30f8f8cSSatish Balay         new_j = (int*)(new_a + bs2*new_nz); \
202a30f8f8cSSatish Balay         new_i = new_j + new_nz; \
203a30f8f8cSSatish Balay  \
204a30f8f8cSSatish Balay         /* copy over old data into new slots */ \
205a30f8f8cSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
206a30f8f8cSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
207a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
208a30f8f8cSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
209a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
210a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
211a30f8f8cSSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
212a30f8f8cSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
213a30f8f8cSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
214a30f8f8cSSatish Balay         /* free up old matrix storage */ \
215a30f8f8cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
216a30f8f8cSSatish Balay         if (!b->singlemalloc) { \
217a30f8f8cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
218a30f8f8cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
219a30f8f8cSSatish Balay         } \
220a30f8f8cSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
221a30f8f8cSSatish Balay         b->singlemalloc = PETSC_TRUE; \
222a30f8f8cSSatish Balay  \
223a30f8f8cSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
224a30f8f8cSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
225b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
226a30f8f8cSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
227a30f8f8cSSatish Balay         b->reallocs++; \
228a30f8f8cSSatish Balay         b->nz++; \
229a30f8f8cSSatish Balay       } \
230a30f8f8cSSatish Balay       N = nrow++ - 1;  \
231a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
232a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
233a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
234a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
235a30f8f8cSSatish Balay       } \
236a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
237a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
238a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
239a30f8f8cSSatish Balay       b_noinsert:; \
240a30f8f8cSSatish Balay     bilen[brow] = nrow; \
241a30f8f8cSSatish Balay }
242a30f8f8cSSatish Balay #endif
243a30f8f8cSSatish Balay 
244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2454a2ae208SSatish Balay #undef __FUNCT__
2464a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
247*f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
248a30f8f8cSSatish Balay {
249a30f8f8cSSatish Balay   Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data;
250a30f8f8cSSatish Balay   int          ierr,i,N = m*n;
251a30f8f8cSSatish Balay   MatScalar    *vsingle;
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   PetscFunctionBegin;
254a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
255a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
25682502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
257a30f8f8cSSatish Balay     b->setvalueslen  = N;
258a30f8f8cSSatish Balay   }
259a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
260a30f8f8cSSatish Balay 
261a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
262a30f8f8cSSatish Balay     vsingle[i] = v[i];
263a30f8f8cSSatish Balay   }
264a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
265a30f8f8cSSatish Balay   PetscFunctionReturn(0);
266a30f8f8cSSatish Balay }
267a30f8f8cSSatish Balay 
2684a2ae208SSatish Balay #undef __FUNCT__
2694a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
270*f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
271a30f8f8cSSatish Balay {
272a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
273a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
274a30f8f8cSSatish Balay   MatScalar   *vsingle;
275a30f8f8cSSatish Balay 
276a30f8f8cSSatish Balay   PetscFunctionBegin;
277a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
278a30f8f8cSSatish Balay     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
27982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
280a30f8f8cSSatish Balay     b->setvalueslen  = N;
281a30f8f8cSSatish Balay   }
282a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
283a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
284a30f8f8cSSatish Balay     vsingle[i] = v[i];
285a30f8f8cSSatish Balay   }
286a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
287a30f8f8cSSatish Balay   PetscFunctionReturn(0);
288a30f8f8cSSatish Balay }
289a30f8f8cSSatish Balay 
2904a2ae208SSatish Balay #undef __FUNCT__
2914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT"
292*f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
293a30f8f8cSSatish Balay {
294a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
295a30f8f8cSSatish Balay   int         ierr,i,N = m*n;
296a30f8f8cSSatish Balay   MatScalar   *vsingle;
297a30f8f8cSSatish Balay 
298a30f8f8cSSatish Balay   PetscFunctionBegin;
29929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3004d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
301a30f8f8cSSatish Balay }
302a30f8f8cSSatish Balay 
3034a2ae208SSatish Balay #undef __FUNCT__
3044a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT"
305*f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv)
306a30f8f8cSSatish Balay {
307a30f8f8cSSatish Balay   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
308a30f8f8cSSatish Balay   int         ierr,i,N = m*n*b->bs2;
309a30f8f8cSSatish Balay   MatScalar   *vsingle;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   PetscFunctionBegin;
31229bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
3134d76ade7SHong Zhang   /* PetscFunctionReturn(0); */
314a30f8f8cSSatish Balay }
315a30f8f8cSSatish Balay #endif
316a30f8f8cSSatish Balay 
317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
318a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
319a30f8f8cSSatish Balay */
3204a2ae208SSatish Balay #undef __FUNCT__
321e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
322*f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
323a30f8f8cSSatish Balay {
324a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
325a30f8f8cSSatish Balay   MatScalar    value;
326b5df2d14SHong Zhang   PetscTruth   roworiented = baij->roworiented;
327a30f8f8cSSatish Balay   int          ierr,i,j,row,col;
328b5df2d14SHong Zhang   int          rstart_orig=baij->rstart_bs;
329a30f8f8cSSatish Balay   int          rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
330a30f8f8cSSatish Balay   int          cend_orig=baij->cend_bs,bs=baij->bs;
331a30f8f8cSSatish Balay 
332a30f8f8cSSatish Balay   /* Some Variables required in the macro */
333a30f8f8cSSatish Balay   Mat          A = baij->A;
334a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data;
335a30f8f8cSSatish Balay   int          *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
336a30f8f8cSSatish Balay   MatScalar    *aa=a->a;
337a30f8f8cSSatish Balay 
338a30f8f8cSSatish Balay   Mat          B = baij->B;
339a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(B)->data;
340a30f8f8cSSatish Balay   int          *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
341a30f8f8cSSatish Balay   MatScalar    *ba=b->a;
342a30f8f8cSSatish Balay 
343a30f8f8cSSatish Balay   int          *rp,ii,nrow,_i,rmax,N,brow,bcol;
344a30f8f8cSSatish Balay   int          low,high,t,ridx,cidx,bs2=a->bs2;
345a30f8f8cSSatish Balay   MatScalar    *ap,*bap;
346a30f8f8cSSatish Balay 
347a30f8f8cSSatish Balay   /* for stash */
348f65c83cfSHong Zhang   int          n_loc, *in_loc=0;
349f65c83cfSHong Zhang   MatScalar    *v_loc=0;
350a30f8f8cSSatish Balay 
351a30f8f8cSSatish Balay   PetscFunctionBegin;
352a30f8f8cSSatish Balay 
353a30f8f8cSSatish Balay   if(!baij->donotstash){
35482502324SSatish Balay     ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr);
35582502324SSatish Balay     ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr);
356a30f8f8cSSatish Balay   }
357a30f8f8cSSatish Balay 
358a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
359a30f8f8cSSatish Balay     if (im[i] < 0) continue;
360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
361590ac198SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1);
362a30f8f8cSSatish Balay #endif
363a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
364a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
365a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
366f65c83cfSHong Zhang         if (im[i]/bs > in[j]/bs) continue;    /* ignore lower triangular blocks */
367a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
368a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
369a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
370a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
371a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
372a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
373a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
374a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
376590ac198SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);}
377a30f8f8cSSatish Balay #endif
378a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
379a30f8f8cSSatish Balay           if (mat->was_assembled) {
380a30f8f8cSSatish Balay             if (!baij->colmap) {
381a30f8f8cSSatish Balay               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
382a30f8f8cSSatish Balay             }
383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
384a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
38571730473SSatish Balay             col  = col - 1;
386a30f8f8cSSatish Balay #else
38771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
388a30f8f8cSSatish Balay #endif
389a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
390a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
391a30f8f8cSSatish Balay               col =  in[j];
392a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
393a30f8f8cSSatish Balay               B = baij->B;
394a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
395a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
396a30f8f8cSSatish Balay               ba=b->a;
39771730473SSatish Balay             } else col += in[j]%bs;
398a30f8f8cSSatish Balay           } else col = in[j];
399a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
400a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
401a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
402a30f8f8cSSatish Balay         }
403a30f8f8cSSatish Balay       }
404a30f8f8cSSatish Balay     } else {  /* off processor entry */
405a30f8f8cSSatish Balay       if (!baij->donotstash) {
406a30f8f8cSSatish Balay         n_loc = 0;
407a30f8f8cSSatish Balay         for (j=0; j<n; j++){
408f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
409a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
410a30f8f8cSSatish Balay           if (roworiented) {
411a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
412a30f8f8cSSatish Balay           } else {
413a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
414a30f8f8cSSatish Balay           }
415a30f8f8cSSatish Balay           n_loc++;
416a30f8f8cSSatish Balay         }
417a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
418a30f8f8cSSatish Balay       }
419a30f8f8cSSatish Balay     }
420a30f8f8cSSatish Balay   }
421a30f8f8cSSatish Balay 
422a30f8f8cSSatish Balay   if(!baij->donotstash){
423a30f8f8cSSatish Balay     ierr = PetscFree(in_loc);CHKERRQ(ierr);
424a30f8f8cSSatish Balay     ierr = PetscFree(v_loc);CHKERRQ(ierr);
425a30f8f8cSSatish Balay   }
426a30f8f8cSSatish Balay   PetscFunctionReturn(0);
427a30f8f8cSSatish Balay }
428a30f8f8cSSatish Balay 
4294a2ae208SSatish Balay #undef __FUNCT__
430e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
431*f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
432a30f8f8cSSatish Balay {
4330880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
434*f15d580aSBarry Smith   const MatScalar *value;
435*f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
4360880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
4370880e062SHong Zhang   int             ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
4380880e062SHong Zhang   int             rend=baij->rend,cstart=baij->cstart,stepval;
4390880e062SHong Zhang   int             cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
4400880e062SHong Zhang 
441a30f8f8cSSatish Balay   PetscFunctionBegin;
4420880e062SHong Zhang   if(!barray) {
4430880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
4440880e062SHong Zhang     baij->barray = barray;
4450880e062SHong Zhang   }
4460880e062SHong Zhang 
4470880e062SHong Zhang   if (roworiented) {
4480880e062SHong Zhang     stepval = (n-1)*bs;
4490880e062SHong Zhang   } else {
4500880e062SHong Zhang     stepval = (m-1)*bs;
4510880e062SHong Zhang   }
4520880e062SHong Zhang   for (i=0; i<m; i++) {
4530880e062SHong Zhang     if (im[i] < 0) continue;
4540880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
455590ac198SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1);
4560880e062SHong Zhang #endif
4570880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
4580880e062SHong Zhang       row = im[i] - rstart;
4590880e062SHong Zhang       for (j=0; j<n; j++) {
4600880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
4610880e062SHong Zhang         if ((roworiented) && (n == 1)) {
462*f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
4630880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
464*f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
4650880e062SHong Zhang         } else { /* Here a copy is required */
4660880e062SHong Zhang           if (roworiented) {
4670880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
4680880e062SHong Zhang           } else {
4690880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
4700880e062SHong Zhang           }
4710880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
4720880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
4730880e062SHong Zhang               *barray++  = *value++;
4740880e062SHong Zhang             }
4750880e062SHong Zhang           }
4760880e062SHong Zhang           barray -=bs2;
4770880e062SHong Zhang         }
4780880e062SHong Zhang 
4790880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
4800880e062SHong Zhang           col  = in[j] - cstart;
4810880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4820880e062SHong Zhang         }
4830880e062SHong Zhang         else if (in[j] < 0) continue;
4840880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
485590ac198SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);}
4860880e062SHong Zhang #endif
4870880e062SHong Zhang         else {
4880880e062SHong Zhang           if (mat->was_assembled) {
4890880e062SHong Zhang             if (!baij->colmap) {
4900880e062SHong Zhang               ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
4910880e062SHong Zhang             }
4920880e062SHong Zhang 
4930880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
4940880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4950880e062SHong Zhang             { int data;
4960880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
4970880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
4980880e062SHong Zhang             }
4990880e062SHong Zhang #else
5000880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
5010880e062SHong Zhang #endif
5020880e062SHong Zhang #endif
5030880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
5040880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
5050880e062SHong Zhang             col  = (col - 1)/bs;
5060880e062SHong Zhang #else
5070880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
5080880e062SHong Zhang #endif
5090880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
5100880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
5110880e062SHong Zhang               col =  in[j];
5120880e062SHong Zhang             }
5130880e062SHong Zhang           }
5140880e062SHong Zhang           else col = in[j];
5150880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
5160880e062SHong Zhang         }
5170880e062SHong Zhang       }
5180880e062SHong Zhang     } else {
5190880e062SHong Zhang       if (!baij->donotstash) {
5200880e062SHong Zhang         if (roworiented) {
5210880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5220880e062SHong Zhang         } else {
5230880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5240880e062SHong Zhang         }
5250880e062SHong Zhang       }
5260880e062SHong Zhang     }
5270880e062SHong Zhang   }
5280880e062SHong Zhang   PetscFunctionReturn(0);
529a30f8f8cSSatish Balay }
530a30f8f8cSSatish Balay 
531a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887
532a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
533a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
534a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5354a2ae208SSatish Balay #undef __FUNCT__
5364a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar"
537*f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
538a30f8f8cSSatish Balay {
539a30f8f8cSSatish Balay   PetscFunctionBegin;
54029bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
54196e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
542a30f8f8cSSatish Balay }
543a30f8f8cSSatish Balay 
5444a2ae208SSatish Balay #undef __FUNCT__
5454a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar"
546*f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv)
547a30f8f8cSSatish Balay {
548a30f8f8cSSatish Balay   PetscFunctionBegin;
54929bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
55096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
551a30f8f8cSSatish Balay }
552a30f8f8cSSatish Balay 
5534a2ae208SSatish Balay #undef __FUNCT__
5544a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
555*f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[])
556a30f8f8cSSatish Balay {
557f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
558a30f8f8cSSatish Balay   int          bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
559a30f8f8cSSatish Balay   int          bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
560a30f8f8cSSatish Balay 
561a30f8f8cSSatish Balay   PetscFunctionBegin;
562a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
563590ac198SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]);
564590ac198SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1);
565a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
566a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
567a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
568590ac198SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]);
569590ac198SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1);
570a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
571a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
572c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
573a30f8f8cSSatish Balay         } else {
574a30f8f8cSSatish Balay           if (!baij->colmap) {
575a30f8f8cSSatish Balay             ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr);
576a30f8f8cSSatish Balay           }
577a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
578a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
579a30f8f8cSSatish Balay           data --;
580a30f8f8cSSatish Balay #else
581a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
582a30f8f8cSSatish Balay #endif
583a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
584a30f8f8cSSatish Balay           else {
585a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
586c8407628SSatish Balay             ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
587a30f8f8cSSatish Balay           }
588a30f8f8cSSatish Balay         }
589a30f8f8cSSatish Balay       }
590a30f8f8cSSatish Balay     } else {
59129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
592a30f8f8cSSatish Balay     }
593a30f8f8cSSatish Balay   }
594a30f8f8cSSatish Balay  PetscFunctionReturn(0);
595a30f8f8cSSatish Balay }
596a30f8f8cSSatish Balay 
5974a2ae208SSatish Balay #undef __FUNCT__
5984a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
599a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
600a30f8f8cSSatish Balay {
601a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
602bc0ba53dSHong Zhang   /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */
603bc0ba53dSHong Zhang   /* Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ*)baij->B->data; */
604a30f8f8cSSatish Balay   int        ierr;
605a30f8f8cSSatish Balay   PetscReal  sum[2],*lnorm2;
606a30f8f8cSSatish Balay 
607a30f8f8cSSatish Balay   PetscFunctionBegin;
608a30f8f8cSSatish Balay   if (baij->size == 1) {
609a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
610a30f8f8cSSatish Balay   } else {
611a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
612f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
613a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
614a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
615a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
616a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
617a30f8f8cSSatish Balay       /*
61856faa61eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
61956faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]);
620a30f8f8cSSatish Balay       */
621d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       /*
62356faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]);
62456faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm); */
625a30f8f8cSSatish Balay 
626a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
627a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
628a30f8f8cSSatish Balay     } else {
62929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
630a30f8f8cSSatish Balay     }
631a30f8f8cSSatish Balay   }
632a30f8f8cSSatish Balay   PetscFunctionReturn(0);
633a30f8f8cSSatish Balay }
634a30f8f8cSSatish Balay 
635a30f8f8cSSatish Balay /*
636a30f8f8cSSatish Balay   Creates the hash table, and sets the table
637a30f8f8cSSatish Balay   This table is created only once.
638a30f8f8cSSatish Balay   If new entried need to be added to the matrix
639a30f8f8cSSatish Balay   then the hash table has to be destroyed and
640a30f8f8cSSatish Balay   recreated.
641a30f8f8cSSatish Balay */
6424a2ae208SSatish Balay #undef __FUNCT__
6434a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private"
644a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor)
645a30f8f8cSSatish Balay {
646a30f8f8cSSatish Balay   PetscFunctionBegin;
64729bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
64896e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
649a30f8f8cSSatish Balay }
650a30f8f8cSSatish Balay 
6514a2ae208SSatish Balay #undef __FUNCT__
6524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
653a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
654a30f8f8cSSatish Balay {
655a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
656a30f8f8cSSatish Balay   int         ierr,nstash,reallocs;
657a30f8f8cSSatish Balay   InsertMode  addv;
658a30f8f8cSSatish Balay 
659a30f8f8cSSatish Balay   PetscFunctionBegin;
660a30f8f8cSSatish Balay   if (baij->donotstash) {
661a30f8f8cSSatish Balay     PetscFunctionReturn(0);
662a30f8f8cSSatish Balay   }
663a30f8f8cSSatish Balay 
664a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
665a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
66729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
668a30f8f8cSSatish Balay   }
669a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
672a30f8f8cSSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
673a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
674b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
675a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
676b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
677a30f8f8cSSatish Balay   PetscFunctionReturn(0);
678a30f8f8cSSatish Balay }
679a30f8f8cSSatish Balay 
6804a2ae208SSatish Balay #undef __FUNCT__
6814a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
682a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
683a30f8f8cSSatish Balay {
684a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data;
685a30f8f8cSSatish Balay   Mat_SeqSBAIJ  *a=(Mat_SeqSBAIJ*)baij->A->data;
686a30f8f8cSSatish Balay   Mat_SeqBAIJ  *b=(Mat_SeqBAIJ*)baij->B->data;
687a30f8f8cSSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
688a30f8f8cSSatish Balay   int         *row,*col,other_disassembled;
689a30f8f8cSSatish Balay   PetscTruth  r1,r2,r3;
690a30f8f8cSSatish Balay   MatScalar   *val;
691a30f8f8cSSatish Balay   InsertMode  addv = mat->insertmode;
69227f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
6935222a1afSHong Zhang   PetscTruth  flag;
6945222a1afSHong Zhang #endif
695a30f8f8cSSatish Balay 
696a30f8f8cSSatish Balay   PetscFunctionBegin;
697a30f8f8cSSatish Balay 
698a30f8f8cSSatish Balay   if (!baij->donotstash) {
699a30f8f8cSSatish Balay     while (1) {
700a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
701a30f8f8cSSatish Balay       /*
70256faa61eSBarry Smith       PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg);
70356faa61eSBarry Smith       PetscSynchronizedFlush(mat->comm);
704a30f8f8cSSatish Balay       */
705a30f8f8cSSatish Balay       if (!flg) break;
706a30f8f8cSSatish Balay 
707a30f8f8cSSatish Balay       for (i=0; i<n;) {
708a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
709a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
710a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
711a30f8f8cSSatish Balay         else       ncols = n-i;
712a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
713a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
714a30f8f8cSSatish Balay         i = j;
715a30f8f8cSSatish Balay       }
716a30f8f8cSSatish Balay     }
717a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
719a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
720a30f8f8cSSatish Balay        restore the original flags */
721a30f8f8cSSatish Balay     r1 = baij->roworiented;
722a30f8f8cSSatish Balay     r2 = a->roworiented;
723a30f8f8cSSatish Balay     r3 = b->roworiented;
724a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
725a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
726a30f8f8cSSatish Balay     b->roworiented    = PETSC_FALSE;
727a30f8f8cSSatish Balay     while (1) {
728a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
729a30f8f8cSSatish Balay       if (!flg) break;
730a30f8f8cSSatish Balay 
731a30f8f8cSSatish Balay       for (i=0; i<n;) {
732a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
733a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
734a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
735a30f8f8cSSatish Balay         else       ncols = n-i;
736a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
737a30f8f8cSSatish Balay         i = j;
738a30f8f8cSSatish Balay       }
739a30f8f8cSSatish Balay     }
740a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
741a30f8f8cSSatish Balay     baij->roworiented = r1;
742a30f8f8cSSatish Balay     a->roworiented    = r2;
743a30f8f8cSSatish Balay     b->roworiented    = r3;
744a30f8f8cSSatish Balay   }
745a30f8f8cSSatish Balay 
746a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
747a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
748a30f8f8cSSatish Balay 
749a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
750a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
751a30f8f8cSSatish Balay   /*
752a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
753a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
754a30f8f8cSSatish Balay   */
755a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
756a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
757a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
758c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
759a30f8f8cSSatish Balay     }
760a30f8f8cSSatish Balay   }
761a30f8f8cSSatish Balay 
762a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
76340781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
764a30f8f8cSSatish Balay   }
765a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
766a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
767a30f8f8cSSatish Balay 
768a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g)
769a30f8f8cSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
770f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
771a30f8f8cSSatish Balay     baij->ht_total_ct  = 0;
772a30f8f8cSSatish Balay     baij->ht_insert_ct = 0;
773a30f8f8cSSatish Balay   }
774a30f8f8cSSatish Balay #endif
775a30f8f8cSSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
776c8407628SSatish Balay     ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
777a30f8f8cSSatish Balay     mat->ops->setvalues        = MatSetValues_MPISBAIJ_HT;
778a30f8f8cSSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT;
779a30f8f8cSSatish Balay   }
780a30f8f8cSSatish Balay 
781a30f8f8cSSatish Balay   if (baij->rowvalues) {
782a30f8f8cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
783a30f8f8cSSatish Balay     baij->rowvalues = 0;
784a30f8f8cSSatish Balay   }
7855222a1afSHong Zhang 
7865222a1afSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
7872c535e4dSHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
7885222a1afSHong Zhang   if (flag) { ierr = MatUseSpooles_MPISBAIJ(mat);CHKERRQ(ierr); }
7895222a1afSHong Zhang #endif
79027f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
79127f1aa60SHong Zhang   ierr = PetscOptionsHasName(mat->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
79227f1aa60SHong Zhang   if (flag) { ierr = MatUseMUMPS_MPIAIJ(mat);CHKERRQ(ierr); }
79327f1aa60SHong Zhang #endif
794a30f8f8cSSatish Balay   PetscFunctionReturn(0);
795a30f8f8cSSatish Balay }
796a30f8f8cSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
7984a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
799b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
800a30f8f8cSSatish Balay {
801a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
802fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
803a30f8f8cSSatish Balay   PetscTruth        isascii,isdraw;
804b0a32e0cSBarry Smith   PetscViewer       sviewer;
805f3ef73ceSBarry Smith   PetscViewerFormat format;
806a30f8f8cSSatish Balay 
807a30f8f8cSSatish Balay   PetscFunctionBegin;
808b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
809fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
810a30f8f8cSSatish Balay   if (isascii) {
811b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
812456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
813a30f8f8cSSatish Balay       MatInfo info;
814a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
815a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
816b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
817b5df2d14SHong Zhang               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
818a30f8f8cSSatish Balay               baij->bs,(int)info.memory);CHKERRQ(ierr);
819a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
820b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
821a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
822b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
823b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
824a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
825a30f8f8cSSatish Balay       PetscFunctionReturn(0);
826fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
827b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
828a30f8f8cSSatish Balay       PetscFunctionReturn(0);
829a30f8f8cSSatish Balay     }
830a30f8f8cSSatish Balay   }
831a30f8f8cSSatish Balay 
832a30f8f8cSSatish Balay   if (isdraw) {
833b0a32e0cSBarry Smith     PetscDraw       draw;
834a30f8f8cSSatish Balay     PetscTruth isnull;
835b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
836b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
837a30f8f8cSSatish Balay   }
838a30f8f8cSSatish Balay 
839a30f8f8cSSatish Balay   if (size == 1) {
840e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
841a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
842a30f8f8cSSatish Balay   } else {
843a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
844a30f8f8cSSatish Balay     Mat         A;
84565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
84665d70643SHong Zhang     Mat_SeqBAIJ *Bloc;
847b5df2d14SHong Zhang     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
848a30f8f8cSSatish Balay     MatScalar   *a;
849a30f8f8cSSatish Balay 
850a30f8f8cSSatish Balay     if (!rank) {
851bc0ba53dSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
852a30f8f8cSSatish Balay     } else {
853f65c83cfSHong Zhang       ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
854a30f8f8cSSatish Balay     }
855b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
856a30f8f8cSSatish Balay 
857a30f8f8cSSatish Balay     /* copy over the A part */
85865d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
859a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
86082502324SSatish Balay     ierr  = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
861a30f8f8cSSatish Balay 
862a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
863a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
864a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
865a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
866a30f8f8cSSatish Balay         col = (baij->cstart+aj[j])*bs;
867a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
868a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
869a30f8f8cSSatish Balay           col++; a += bs;
870a30f8f8cSSatish Balay         }
871a30f8f8cSSatish Balay       }
872a30f8f8cSSatish Balay     }
873a30f8f8cSSatish Balay     /* copy over the B part */
87465d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
87565d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
876a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
877a30f8f8cSSatish Balay       rvals[0] = bs*(baij->rstart + i);
878a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
879a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
880a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
881a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
882a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
883a30f8f8cSSatish Balay           col++; a += bs;
884a30f8f8cSSatish Balay         }
885a30f8f8cSSatish Balay       }
886a30f8f8cSSatish Balay     }
887a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
888a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
889a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
890a30f8f8cSSatish Balay     /*
891a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
892b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
893a30f8f8cSSatish Balay     */
894b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
89565d70643SHong Zhang     if (!rank) {
896e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
897a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
898a30f8f8cSSatish Balay     }
899b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
900a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
901a30f8f8cSSatish Balay   }
902a30f8f8cSSatish Balay   PetscFunctionReturn(0);
903a30f8f8cSSatish Balay }
904a30f8f8cSSatish Balay 
9054a2ae208SSatish Balay #undef __FUNCT__
9064a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
907b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
908a30f8f8cSSatish Balay {
909a30f8f8cSSatish Balay   int        ierr;
910a30f8f8cSSatish Balay   PetscTruth isascii,isdraw,issocket,isbinary;
911a30f8f8cSSatish Balay 
912a30f8f8cSSatish Balay   PetscFunctionBegin;
913b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
914fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
915b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
916fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
917a30f8f8cSSatish Balay   if (isascii || isdraw || issocket || isbinary) {
918a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
919a30f8f8cSSatish Balay   } else {
92029bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
921a30f8f8cSSatish Balay   }
922a30f8f8cSSatish Balay   PetscFunctionReturn(0);
923a30f8f8cSSatish Balay }
924a30f8f8cSSatish Balay 
9254a2ae208SSatish Balay #undef __FUNCT__
9264a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
927a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat)
928a30f8f8cSSatish Balay {
929a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
930a30f8f8cSSatish Balay   int         ierr;
931a30f8f8cSSatish Balay 
932a30f8f8cSSatish Balay   PetscFunctionBegin;
933a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
934b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
935a30f8f8cSSatish Balay #endif
936a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
937a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
938a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
939a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
940a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
941a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
942a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
943a30f8f8cSSatish Balay #else
944a30f8f8cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
945a30f8f8cSSatish Balay #endif
946a30f8f8cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
947a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
948a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
94940781036SHong Zhang   if (baij->slvec0) {
95040781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
95140781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
95240781036SHong Zhang   }
95340781036SHong Zhang   if (baij->slvec1) {
95440781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
95540781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
95640781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
95740781036SHong Zhang   }
95840781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
959a30f8f8cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
960a30f8f8cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
961a30f8f8cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
962a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
963a30f8f8cSSatish Balay   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
964a30f8f8cSSatish Balay #endif
965a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
966a30f8f8cSSatish Balay   PetscFunctionReturn(0);
967a30f8f8cSSatish Balay }
968a30f8f8cSSatish Balay 
9694a2ae208SSatish Balay #undef __FUNCT__
970a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
971a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
972a9d4b620SHong Zhang {
973a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
9744024bf32SHong Zhang   int         ierr,nt,mbs=a->mbs,bs=a->bs;
975a9d4b620SHong Zhang   PetscScalar *x,*from,zero=0.0;
976a9d4b620SHong Zhang 
977a9d4b620SHong Zhang   PetscFunctionBegin;
978a9d4b620SHong Zhang   /*
97956faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," _1comm is called ...\n");
98056faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
981a9d4b620SHong Zhang   */
982a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
983a9d4b620SHong Zhang   if (nt != A->n) {
984a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
985a9d4b620SHong Zhang   }
986a9d4b620SHong Zhang   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
987a9d4b620SHong Zhang   if (nt != A->m) {
988a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
989a9d4b620SHong Zhang   }
990a9d4b620SHong Zhang 
991a9d4b620SHong Zhang   /* diagonal part */
992a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
993a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
994a9d4b620SHong Zhang 
995a9d4b620SHong Zhang   /* subdiagonal part */
996a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
997a9d4b620SHong Zhang 
998a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
999a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1000a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1001a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1002a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1003a9d4b620SHong Zhang 
1004a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1005a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1006a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1007a9d4b620SHong Zhang 
1008a9d4b620SHong Zhang   /* supperdiagonal part */
1009a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
1010a9d4b620SHong Zhang 
1011a9d4b620SHong Zhang   PetscFunctionReturn(0);
1012a9d4b620SHong Zhang }
1013a9d4b620SHong Zhang 
1014a9d4b620SHong Zhang #undef __FUNCT__
101540781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
101640781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
1017a30f8f8cSSatish Balay {
1018a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1019a30f8f8cSSatish Balay   int         ierr,nt;
1020a30f8f8cSSatish Balay 
1021a30f8f8cSSatish Balay   PetscFunctionBegin;
1022a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1023b5df2d14SHong Zhang   if (nt != A->n) {
102429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1025a30f8f8cSSatish Balay   }
1026a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1027b5df2d14SHong Zhang   if (nt != A->m) {
102829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1029a30f8f8cSSatish Balay   }
103065d70643SHong Zhang 
1031b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1032b941877fSHong Zhang   /* do diagonal part */
1033b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1034b941877fSHong Zhang   /* do supperdiagonal part */
1035b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1036b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
1037b941877fSHong Zhang   /* do subdiagonal part */
1038b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1039b941877fSHong Zhang   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1040b941877fSHong Zhang   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
104165d70643SHong Zhang 
1042a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1043a30f8f8cSSatish Balay }
1044a30f8f8cSSatish Balay 
10454a2ae208SSatish Balay #undef __FUNCT__
10464a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
1047a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1048a30f8f8cSSatish Balay {
1049de8b6608SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1050a9d4b620SHong Zhang   int          ierr,mbs=a->mbs,bs=a->bs;
1051a9d4b620SHong Zhang   PetscScalar  *x,*from,zero=0.0;
1052a9d4b620SHong Zhang 
1053a9d4b620SHong Zhang   PetscFunctionBegin;
1054a9d4b620SHong Zhang   /*
105556faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
105656faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
1057a9d4b620SHong Zhang   */
1058a9d4b620SHong Zhang   /* diagonal part */
1059a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
1060a9d4b620SHong Zhang   ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr);
1061a9d4b620SHong Zhang 
1062a9d4b620SHong Zhang   /* subdiagonal part */
1063a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
1064a9d4b620SHong Zhang 
1065a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
1066a9d4b620SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
1067a9d4b620SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1068a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
1069a9d4b620SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
1070a9d4b620SHong Zhang 
1071a9d4b620SHong Zhang   ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1072a9d4b620SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1073a9d4b620SHong Zhang   ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr);
1074a9d4b620SHong Zhang 
1075a9d4b620SHong Zhang   /* supperdiagonal part */
1076a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
1077a9d4b620SHong Zhang 
1078a9d4b620SHong Zhang   PetscFunctionReturn(0);
1079a9d4b620SHong Zhang }
1080a9d4b620SHong Zhang 
1081a9d4b620SHong Zhang #undef __FUNCT__
1082a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
1083a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
1084a9d4b620SHong Zhang {
1085a9d4b620SHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1086aa482183SHong Zhang   int        ierr;
1087a30f8f8cSSatish Balay 
1088a30f8f8cSSatish Balay   PetscFunctionBegin;
1089b941877fSHong Zhang   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1090b941877fSHong Zhang   /* do diagonal part */
1091b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1092b941877fSHong Zhang   /* do supperdiagonal part */
1093b941877fSHong Zhang   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1094de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
1095de8b6608SHong Zhang 
1096b941877fSHong Zhang   /* do subdiagonal part */
1097a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1098a30f8f8cSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1099a30f8f8cSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1100aa482183SHong Zhang 
1101a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1102a30f8f8cSSatish Balay }
1103a30f8f8cSSatish Balay 
11044a2ae208SSatish Balay #undef __FUNCT__
11054a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ"
1106a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy)
1107a30f8f8cSSatish Balay {
1108a30f8f8cSSatish Balay   PetscFunctionBegin;
110929bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMult().");
111096e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1111a30f8f8cSSatish Balay }
1112a30f8f8cSSatish Balay 
11134a2ae208SSatish Balay #undef __FUNCT__
11144a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ"
1115a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1116a30f8f8cSSatish Balay {
1117a30f8f8cSSatish Balay   PetscFunctionBegin;
111829bbc08cSBarry Smith   SETERRQ(1,"Matrix is symmetric. Call MatMultAdd().");
111996e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
1120a30f8f8cSSatish Balay }
1121a30f8f8cSSatish Balay 
1122a30f8f8cSSatish Balay /*
1123a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1124a30f8f8cSSatish Balay    diagonal block
1125a30f8f8cSSatish Balay */
11264a2ae208SSatish Balay #undef __FUNCT__
11274a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
1128a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
1129a30f8f8cSSatish Balay {
1130a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1131a30f8f8cSSatish Balay   int         ierr;
1132a30f8f8cSSatish Balay 
1133a30f8f8cSSatish Balay   PetscFunctionBegin;
113429bbc08cSBarry Smith   /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1135a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1137a30f8f8cSSatish Balay }
1138a30f8f8cSSatish Balay 
11394a2ae208SSatish Balay #undef __FUNCT__
11404a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
114187828ca2SBarry Smith int MatScale_MPISBAIJ(PetscScalar *aa,Mat A)
1142a30f8f8cSSatish Balay {
1143a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1144a30f8f8cSSatish Balay   int         ierr;
1145a30f8f8cSSatish Balay 
1146a30f8f8cSSatish Balay   PetscFunctionBegin;
1147a30f8f8cSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1148a30f8f8cSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
1149a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1150a30f8f8cSSatish Balay }
1151a30f8f8cSSatish Balay 
11524a2ae208SSatish Balay #undef __FUNCT__
11534a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
115487828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1155a30f8f8cSSatish Balay {
1156a30f8f8cSSatish Balay   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
115787828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1158a30f8f8cSSatish Balay   int            bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1159a30f8f8cSSatish Balay   int            nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1160a30f8f8cSSatish Balay   int            *cmap,*idx_p,cstart = mat->cstart;
1161a30f8f8cSSatish Balay 
1162a30f8f8cSSatish Balay   PetscFunctionBegin;
116329bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1164a30f8f8cSSatish Balay   mat->getrowactive = PETSC_TRUE;
1165a30f8f8cSSatish Balay 
1166a30f8f8cSSatish Balay   if (!mat->rowvalues && (idx || v)) {
1167a30f8f8cSSatish Balay     /*
1168a30f8f8cSSatish Balay         allocate enough space to hold information from the longest row.
1169a30f8f8cSSatish Balay     */
1170a30f8f8cSSatish Balay     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1171a30f8f8cSSatish Balay     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1172a30f8f8cSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1173a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
1174a30f8f8cSSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1175a30f8f8cSSatish Balay       if (max < tmp) { max = tmp; }
1176a30f8f8cSSatish Balay     }
117787828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1178a30f8f8cSSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1179a30f8f8cSSatish Balay   }
1180a30f8f8cSSatish Balay 
118129bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1182a30f8f8cSSatish Balay   lrow = row - brstart;  /* local row index */
1183a30f8f8cSSatish Balay 
1184a30f8f8cSSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1185a30f8f8cSSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1186a30f8f8cSSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1187a30f8f8cSSatish Balay   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1188a30f8f8cSSatish Balay   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1189a30f8f8cSSatish Balay   nztot = nzA + nzB;
1190a30f8f8cSSatish Balay 
1191a30f8f8cSSatish Balay   cmap  = mat->garray;
1192a30f8f8cSSatish Balay   if (v  || idx) {
1193a30f8f8cSSatish Balay     if (nztot) {
1194a30f8f8cSSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1195a30f8f8cSSatish Balay       int imark = -1;
1196a30f8f8cSSatish Balay       if (v) {
1197a30f8f8cSSatish Balay         *v = v_p = mat->rowvalues;
1198a30f8f8cSSatish Balay         for (i=0; i<nzB; i++) {
1199a30f8f8cSSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1200a30f8f8cSSatish Balay           else break;
1201a30f8f8cSSatish Balay         }
1202a30f8f8cSSatish Balay         imark = i;
1203a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1204a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1205a30f8f8cSSatish Balay       }
1206a30f8f8cSSatish Balay       if (idx) {
1207a30f8f8cSSatish Balay         *idx = idx_p = mat->rowindices;
1208a30f8f8cSSatish Balay         if (imark > -1) {
1209a30f8f8cSSatish Balay           for (i=0; i<imark; i++) {
1210a30f8f8cSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1211a30f8f8cSSatish Balay           }
1212a30f8f8cSSatish Balay         } else {
1213a30f8f8cSSatish Balay           for (i=0; i<nzB; i++) {
1214a30f8f8cSSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1215a30f8f8cSSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1216a30f8f8cSSatish Balay             else break;
1217a30f8f8cSSatish Balay           }
1218a30f8f8cSSatish Balay           imark = i;
1219a30f8f8cSSatish Balay         }
1220a30f8f8cSSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1221a30f8f8cSSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1222a30f8f8cSSatish Balay       }
1223a30f8f8cSSatish Balay     } else {
1224a30f8f8cSSatish Balay       if (idx) *idx = 0;
1225a30f8f8cSSatish Balay       if (v)   *v   = 0;
1226a30f8f8cSSatish Balay     }
1227a30f8f8cSSatish Balay   }
1228a30f8f8cSSatish Balay   *nz = nztot;
1229a30f8f8cSSatish Balay   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1230a30f8f8cSSatish Balay   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1231a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1232a30f8f8cSSatish Balay }
1233a30f8f8cSSatish Balay 
12344a2ae208SSatish Balay #undef __FUNCT__
12354a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
123687828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1237a30f8f8cSSatish Balay {
1238a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1239a30f8f8cSSatish Balay 
1240a30f8f8cSSatish Balay   PetscFunctionBegin;
1241a30f8f8cSSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
124229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1243a30f8f8cSSatish Balay   }
1244a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1245a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1246a30f8f8cSSatish Balay }
1247a30f8f8cSSatish Balay 
12484a2ae208SSatish Balay #undef __FUNCT__
12494a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ"
1250a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs)
1251a30f8f8cSSatish Balay {
1252a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1253a30f8f8cSSatish Balay 
1254a30f8f8cSSatish Balay   PetscFunctionBegin;
1255a30f8f8cSSatish Balay   *bs = baij->bs;
1256a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1257a30f8f8cSSatish Balay }
1258a30f8f8cSSatish Balay 
12594a2ae208SSatish Balay #undef __FUNCT__
12604a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1261a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A)
1262a30f8f8cSSatish Balay {
1263a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data;
1264a30f8f8cSSatish Balay   int         ierr;
1265a30f8f8cSSatish Balay 
1266a30f8f8cSSatish Balay   PetscFunctionBegin;
1267a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1268a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1269a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
12734a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1274a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1275a30f8f8cSSatish Balay {
1276a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data;
1277a30f8f8cSSatish Balay   Mat         A = a->A,B = a->B;
1278a30f8f8cSSatish Balay   int         ierr;
1279a30f8f8cSSatish Balay   PetscReal   isend[5],irecv[5];
1280a30f8f8cSSatish Balay 
1281a30f8f8cSSatish Balay   PetscFunctionBegin;
1282f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
1283a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1284a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1285a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1286a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1287a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1288a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1289a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1290a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1291a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1292a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1293a30f8f8cSSatish Balay     info->memory       = isend[3];
1294a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1295a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1296d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1297a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1298a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1299a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1300a30f8f8cSSatish Balay     info->memory       = irecv[3];
1301a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1302a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1303d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1304a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1305a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1306a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1307a30f8f8cSSatish Balay     info->memory       = irecv[3];
1308a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1309a30f8f8cSSatish Balay   } else {
131029bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
1311a30f8f8cSSatish Balay   }
1312f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1313f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1314f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1315f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
1316a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1317a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1318a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
1324a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op)
1325a30f8f8cSSatish Balay {
1326a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
1327a30f8f8cSSatish Balay   int         ierr;
1328a30f8f8cSSatish Balay 
1329a30f8f8cSSatish Balay   PetscFunctionBegin;
1330e98b92d7SKris Buschelman   switch (op) {
1331e98b92d7SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1332e98b92d7SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1333e98b92d7SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1334e98b92d7SKris Buschelman   case MAT_COLUMNS_SORTED:
1335e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1336e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1337e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1338a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1339a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1340e98b92d7SKris Buschelman     break;
1341e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
1342a30f8f8cSSatish Balay     a->roworiented = PETSC_TRUE;
1343a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1344a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1345e98b92d7SKris Buschelman     break;
1346e98b92d7SKris Buschelman   case MAT_ROWS_SORTED:
1347e98b92d7SKris Buschelman   case MAT_ROWS_UNSORTED:
1348e98b92d7SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1349b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
1350e98b92d7SKris Buschelman     break;
1351e98b92d7SKris Buschelman   case MAT_COLUMN_ORIENTED:
1352a30f8f8cSSatish Balay     a->roworiented = PETSC_FALSE;
1353a30f8f8cSSatish Balay     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
1354a30f8f8cSSatish Balay     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1355e98b92d7SKris Buschelman     break;
1356e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1357a30f8f8cSSatish Balay     a->donotstash = PETSC_TRUE;
1358e98b92d7SKris Buschelman     break;
1359e98b92d7SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
136029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1361e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
1362a30f8f8cSSatish Balay     a->ht_flag = PETSC_TRUE;
1363e98b92d7SKris Buschelman     break;
1364e98b92d7SKris Buschelman   default:
136529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1366a30f8f8cSSatish Balay   }
1367a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1368a30f8f8cSSatish Balay }
1369a30f8f8cSSatish Balay 
13704a2ae208SSatish Balay #undef __FUNCT__
13718115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
13728115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B)
1373a30f8f8cSSatish Balay {
13748115998fSBarry Smith   int ierr;
1375a30f8f8cSSatish Balay   PetscFunctionBegin;
1376999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
13778115998fSBarry Smith   PetscFunctionReturn(0);
1378a30f8f8cSSatish Balay }
1379a30f8f8cSSatish Balay 
13804a2ae208SSatish Balay #undef __FUNCT__
13814a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1382a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1383a30f8f8cSSatish Balay {
1384a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1385a30f8f8cSSatish Balay   Mat         a = baij->A,b = baij->B;
1386a30f8f8cSSatish Balay   int         ierr,s1,s2,s3;
1387a30f8f8cSSatish Balay 
1388a30f8f8cSSatish Balay   PetscFunctionBegin;
1389a30f8f8cSSatish Balay   if (ll != rr) {
139029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1391a30f8f8cSSatish Balay   }
1392a30f8f8cSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
1393a30f8f8cSSatish Balay   if (rr) {
1394a30f8f8cSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
139529bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
1396a30f8f8cSSatish Balay     /* Overlap communication with computation. */
1397a30f8f8cSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1398a30f8f8cSSatish Balay     /*} if (ll) { */
1399a30f8f8cSSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
140029bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1401a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
1402a30f8f8cSSatish Balay     /* } */
1403a30f8f8cSSatish Balay   /* scale  the diagonal block */
1404a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1405a30f8f8cSSatish Balay 
1406a30f8f8cSSatish Balay   /* if (rr) { */
1407a30f8f8cSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1408a30f8f8cSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1409a30f8f8cSSatish Balay     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1410a30f8f8cSSatish Balay   }
1411a30f8f8cSSatish Balay 
1412a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1413a30f8f8cSSatish Balay }
1414a30f8f8cSSatish Balay 
14154a2ae208SSatish Balay #undef __FUNCT__
14164a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ"
141787828ca2SBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,PetscScalar *diag)
1418a30f8f8cSSatish Balay {
1419a30f8f8cSSatish Balay   PetscFunctionBegin;
1420c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
1421a30f8f8cSSatish Balay }
1422a30f8f8cSSatish Balay 
14234a2ae208SSatish Balay #undef __FUNCT__
14244a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ"
1425a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A)
1426a30f8f8cSSatish Balay {
1427a30f8f8cSSatish Balay   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1428a30f8f8cSSatish Balay   MPI_Comm    comm = A->comm;
1429a30f8f8cSSatish Balay   static int  called = 0;
1430a30f8f8cSSatish Balay   int         ierr;
1431a30f8f8cSSatish Balay 
1432a30f8f8cSSatish Balay   PetscFunctionBegin;
1433a30f8f8cSSatish Balay   if (!a->rank) {
1434a30f8f8cSSatish Balay     ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr);
1435a30f8f8cSSatish Balay   }
1436a30f8f8cSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1437a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1438a30f8f8cSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
1439a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1440a30f8f8cSSatish Balay }
1441a30f8f8cSSatish Balay 
14424a2ae208SSatish Balay #undef __FUNCT__
14434a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1444a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A)
1445a30f8f8cSSatish Balay {
1446f3566a2aSHong Zhang   Mat_MPISBAIJ *a   = (Mat_MPISBAIJ*)A->data;
1447a30f8f8cSSatish Balay   int         ierr;
1448a30f8f8cSSatish Balay 
1449a30f8f8cSSatish Balay   PetscFunctionBegin;
1450a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1451a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1452a30f8f8cSSatish Balay }
1453a30f8f8cSSatish Balay 
1454a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1455a30f8f8cSSatish Balay 
14564a2ae208SSatish Balay #undef __FUNCT__
14574a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1458a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1459a30f8f8cSSatish Balay {
1460a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1461a30f8f8cSSatish Balay   Mat         a,b,c,d;
1462a30f8f8cSSatish Balay   PetscTruth  flg;
1463a30f8f8cSSatish Balay   int         ierr;
1464a30f8f8cSSatish Balay 
1465a30f8f8cSSatish Balay   PetscFunctionBegin;
1466a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1467a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1468a30f8f8cSSatish Balay 
1469a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1470a30f8f8cSSatish Balay   if (flg == PETSC_TRUE) {
1471a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1472a30f8f8cSSatish Balay   }
1473a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1474a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1475a30f8f8cSSatish Balay }
1476a30f8f8cSSatish Balay 
14774a2ae208SSatish Balay #undef __FUNCT__
14784a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1479273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A)
1480273d9f13SBarry Smith {
1481273d9f13SBarry Smith   int        ierr;
1482273d9f13SBarry Smith 
1483273d9f13SBarry Smith   PetscFunctionBegin;
1484273d9f13SBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1485273d9f13SBarry Smith   PetscFunctionReturn(0);
1486273d9f13SBarry Smith }
1487a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1488a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1489a30f8f8cSSatish Balay   MatSetValues_MPISBAIJ,
1490a30f8f8cSSatish Balay   MatGetRow_MPISBAIJ,
1491a30f8f8cSSatish Balay   MatRestoreRow_MPISBAIJ,
1492a9d4b620SHong Zhang   MatMult_MPISBAIJ,
1493a30f8f8cSSatish Balay   MatMultAdd_MPISBAIJ,
1494a30f8f8cSSatish Balay   MatMultTranspose_MPISBAIJ,
1495a30f8f8cSSatish Balay   MatMultTransposeAdd_MPISBAIJ,
1496a30f8f8cSSatish Balay   0,
1497a30f8f8cSSatish Balay   0,
1498a30f8f8cSSatish Balay   0,
1499a30f8f8cSSatish Balay   0,
1500a30f8f8cSSatish Balay   0,
1501a30f8f8cSSatish Balay   0,
15022798e883SHong Zhang   MatRelax_MPISBAIJ,
1503a30f8f8cSSatish Balay   MatTranspose_MPISBAIJ,
1504a30f8f8cSSatish Balay   MatGetInfo_MPISBAIJ,
1505a30f8f8cSSatish Balay   MatEqual_MPISBAIJ,
1506a30f8f8cSSatish Balay   MatGetDiagonal_MPISBAIJ,
1507a30f8f8cSSatish Balay   MatDiagonalScale_MPISBAIJ,
1508a30f8f8cSSatish Balay   MatNorm_MPISBAIJ,
1509a30f8f8cSSatish Balay   MatAssemblyBegin_MPISBAIJ,
1510a30f8f8cSSatish Balay   MatAssemblyEnd_MPISBAIJ,
1511a30f8f8cSSatish Balay   0,
1512a30f8f8cSSatish Balay   MatSetOption_MPISBAIJ,
1513a30f8f8cSSatish Balay   MatZeroEntries_MPISBAIJ,
1514a30f8f8cSSatish Balay   MatZeroRows_MPISBAIJ,
1515a30f8f8cSSatish Balay   0,
1516a30f8f8cSSatish Balay   0,
1517a30f8f8cSSatish Balay   0,
1518a30f8f8cSSatish Balay   0,
1519273d9f13SBarry Smith   MatSetUpPreallocation_MPISBAIJ,
1520b5df2d14SHong Zhang   0,
1521a30f8f8cSSatish Balay   0,
1522a30f8f8cSSatish Balay   0,
1523a30f8f8cSSatish Balay   0,
1524a30f8f8cSSatish Balay   MatDuplicate_MPISBAIJ,
1525a30f8f8cSSatish Balay   0,
1526a30f8f8cSSatish Balay   0,
1527a30f8f8cSSatish Balay   0,
1528a30f8f8cSSatish Balay   0,
1529a30f8f8cSSatish Balay   0,
15300b15b8e2SSatish Balay   0,
15310b15b8e2SSatish Balay   0,
1532a30f8f8cSSatish Balay   MatGetValues_MPISBAIJ,
1533a30f8f8cSSatish Balay   0,
1534a30f8f8cSSatish Balay   MatPrintHelp_MPISBAIJ,
1535a30f8f8cSSatish Balay   MatScale_MPISBAIJ,
1536a30f8f8cSSatish Balay   0,
1537a30f8f8cSSatish Balay   0,
1538a30f8f8cSSatish Balay   0,
1539a30f8f8cSSatish Balay   MatGetBlockSize_MPISBAIJ,
1540a30f8f8cSSatish Balay   0,
1541a30f8f8cSSatish Balay   0,
1542a30f8f8cSSatish Balay   0,
1543a30f8f8cSSatish Balay   0,
1544a30f8f8cSSatish Balay   0,
1545a30f8f8cSSatish Balay   0,
1546a30f8f8cSSatish Balay   MatSetUnfactored_MPISBAIJ,
1547a30f8f8cSSatish Balay   0,
1548a30f8f8cSSatish Balay   MatSetValuesBlocked_MPISBAIJ,
1549a30f8f8cSSatish Balay   0,
1550a30f8f8cSSatish Balay   0,
1551a30f8f8cSSatish Balay   0,
15528a124369SBarry Smith   MatGetPetscMaps_Petsc,
155324d5174aSHong Zhang   0,
155424d5174aSHong Zhang   0,
155524d5174aSHong Zhang   0,
155624d5174aSHong Zhang   0,
155724d5174aSHong Zhang   0,
155824d5174aSHong Zhang   0,
155924d5174aSHong Zhang   MatGetRowMax_MPISBAIJ};
1560a30f8f8cSSatish Balay 
1561a30f8f8cSSatish Balay 
1562a30f8f8cSSatish Balay EXTERN_C_BEGIN
15634a2ae208SSatish Balay #undef __FUNCT__
15644a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1565a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1566a30f8f8cSSatish Balay {
1567a30f8f8cSSatish Balay   PetscFunctionBegin;
1568a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1569a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1570a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1571a30f8f8cSSatish Balay }
1572a30f8f8cSSatish Balay EXTERN_C_END
1573a30f8f8cSSatish Balay 
1574273d9f13SBarry Smith EXTERN_C_BEGIN
15754a2ae208SSatish Balay #undef __FUNCT__
1576a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1577a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
1578a23d5eceSKris Buschelman {
1579a23d5eceSKris Buschelman   Mat_MPISBAIJ *b;
1580a23d5eceSKris Buschelman   int          ierr,i,mbs,Mbs;
1581a23d5eceSKris Buschelman 
1582a23d5eceSKris Buschelman   PetscFunctionBegin;
1583a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1584a23d5eceSKris Buschelman 
1585a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1586a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1587a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1588a23d5eceSKris Buschelman   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
1589a23d5eceSKris Buschelman   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
1590a23d5eceSKris Buschelman   if (d_nnz) {
1591a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1592a23d5eceSKris Buschelman       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1593a23d5eceSKris Buschelman     }
1594a23d5eceSKris Buschelman   }
1595a23d5eceSKris Buschelman   if (o_nnz) {
1596a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
1597a23d5eceSKris Buschelman       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1598a23d5eceSKris Buschelman     }
1599a23d5eceSKris Buschelman   }
1600a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1601a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
1602a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
1603a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1604a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr);
1605a23d5eceSKris Buschelman 
1606a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1607a23d5eceSKris Buschelman   mbs = B->m/bs;
1608a23d5eceSKris Buschelman   Mbs = B->M/bs;
1609a23d5eceSKris Buschelman   if (mbs*bs != B->m) {
1610a23d5eceSKris Buschelman     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs);
1611a23d5eceSKris Buschelman   }
1612a23d5eceSKris Buschelman 
1613a23d5eceSKris Buschelman   b->bs  = bs;
1614a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1615a23d5eceSKris Buschelman   b->mbs = mbs;
1616a23d5eceSKris Buschelman   b->nbs = mbs;
1617a23d5eceSKris Buschelman   b->Mbs = Mbs;
1618a23d5eceSKris Buschelman   b->Nbs = Mbs;
1619a23d5eceSKris Buschelman 
1620a23d5eceSKris Buschelman   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
1621a23d5eceSKris Buschelman   b->rowners[0]    = 0;
1622a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
1623a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
1624a23d5eceSKris Buschelman   }
1625a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
1626a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
1627a23d5eceSKris Buschelman   b->cstart    = b->rstart;
1628a23d5eceSKris Buschelman   b->cend      = b->rend;
1629a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1630a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
1631a23d5eceSKris Buschelman   }
1632a23d5eceSKris Buschelman   b->rstart_bs = b-> rstart*bs;
1633a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
1634a23d5eceSKris Buschelman 
1635a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
1636a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
1637a23d5eceSKris Buschelman 
1638a23d5eceSKris Buschelman 
1639a23d5eceSKris Buschelman   ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
1640a23d5eceSKris Buschelman   PetscLogObjectParent(B,b->A);
1641a23d5eceSKris Buschelman   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
1642a23d5eceSKris Buschelman   PetscLogObjectParent(B,b->B);
1643a23d5eceSKris Buschelman 
1644a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1645a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1646a23d5eceSKris Buschelman 
1647a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1648a23d5eceSKris Buschelman }
1649a23d5eceSKris Buschelman EXTERN_C_END
1650a23d5eceSKris Buschelman 
1651a23d5eceSKris Buschelman EXTERN_C_BEGIN
1652a23d5eceSKris Buschelman #undef __FUNCT__
16534a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1654b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B)
1655b5df2d14SHong Zhang {
1656b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
1657ca54ac64SHong Zhang   int          ierr;
1658b5df2d14SHong Zhang   PetscTruth   flg;
1659b5df2d14SHong Zhang 
1660b5df2d14SHong Zhang   PetscFunctionBegin;
1661b5df2d14SHong Zhang 
1662b0a32e0cSBarry Smith   ierr    = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1663b0a32e0cSBarry Smith   B->data = (void*)b;
1664b5df2d14SHong Zhang   ierr    = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr);
1665b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1666b5df2d14SHong Zhang 
1667b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1668b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1669b5df2d14SHong Zhang   B->mapping    = 0;
1670b5df2d14SHong Zhang   B->factor     = 0;
1671b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1672b5df2d14SHong Zhang 
1673b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1674b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1675b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1676b5df2d14SHong Zhang 
1677b5df2d14SHong Zhang   /* build local table of row and column ownerships */
167882502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1679273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1680273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1681b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
1682b5df2d14SHong Zhang 
1683b5df2d14SHong Zhang   /* build cache for off array entries formed */
1684b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1685b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1686b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1687b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1688b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1689b5df2d14SHong Zhang 
1690f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1691b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
169264a35ccbSBarry Smith   b->setvalueslen     = 0;
1693b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1694b5df2d14SHong Zhang #endif
1695b5df2d14SHong Zhang 
1696b5df2d14SHong Zhang   /* stuff used in block assembly */
1697b5df2d14SHong Zhang   b->barray       = 0;
1698b5df2d14SHong Zhang 
1699b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1700b5df2d14SHong Zhang   b->lvec         = 0;
1701b5df2d14SHong Zhang   b->Mvctx        = 0;
170240781036SHong Zhang   b->slvec0       = 0;
170340781036SHong Zhang   b->slvec0b      = 0;
170440781036SHong Zhang   b->slvec1       = 0;
170540781036SHong Zhang   b->slvec1a      = 0;
170640781036SHong Zhang   b->slvec1b      = 0;
170740781036SHong Zhang   b->sMvctx       = 0;
1708b5df2d14SHong Zhang 
1709b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1710b5df2d14SHong Zhang   b->rowindices   = 0;
1711b5df2d14SHong Zhang   b->rowvalues    = 0;
1712b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1713b5df2d14SHong Zhang 
1714b5df2d14SHong Zhang   /* hash table stuff */
1715b5df2d14SHong Zhang   b->ht           = 0;
1716b5df2d14SHong Zhang   b->hd           = 0;
1717b5df2d14SHong Zhang   b->ht_size      = 0;
1718b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1719b5df2d14SHong Zhang   b->ht_fact      = 0;
1720b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1721b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1722b5df2d14SHong Zhang 
1723e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
1724b5df2d14SHong Zhang   if (flg) {
1725f6275e2eSBarry Smith     PetscReal fact = 1.39;
1726b5df2d14SHong Zhang     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
1727e82a3eeeSBarry Smith     ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
1728b5df2d14SHong Zhang     if (fact <= 1.0) fact = 1.39;
1729b5df2d14SHong Zhang     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
1730b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact);
1731b5df2d14SHong Zhang   }
1732b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1733b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1734b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1735b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1736b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1737b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1738b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1739b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1740b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1741a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1742a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1743a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
1744b5df2d14SHong Zhang   PetscFunctionReturn(0);
1745b5df2d14SHong Zhang }
1746273d9f13SBarry Smith EXTERN_C_END
1747b5df2d14SHong Zhang 
17484a2ae208SSatish Balay #undef __FUNCT__
17494a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1750b5df2d14SHong Zhang /*@C
1751b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1752b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1753b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1754b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1755b5df2d14SHong Zhang 
1756b5df2d14SHong Zhang    Collective on Mat
1757b5df2d14SHong Zhang 
1758b5df2d14SHong Zhang    Input Parameters:
1759b5df2d14SHong Zhang +  A - the matrix
1760b5df2d14SHong Zhang .  bs   - size of blockk
1761b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1762b5df2d14SHong Zhang            submatrix  (same for all local rows)
1763b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
17646d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
17656d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
17666d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1767b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1768b5df2d14SHong Zhang            submatrix (same for all local rows).
1769b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1770b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1771b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1772b5df2d14SHong Zhang 
1773b5df2d14SHong Zhang 
1774b5df2d14SHong Zhang    Options Database Keys:
1775b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1776b5df2d14SHong Zhang                      block calculations (much slower)
1777b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1778b5df2d14SHong Zhang 
1779b5df2d14SHong Zhang    Notes:
1780b5df2d14SHong Zhang 
1781b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1782b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1783b5df2d14SHong Zhang 
1784b5df2d14SHong Zhang    Storage Information:
1785b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1786b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1787b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1788b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1789b5df2d14SHong Zhang 
1790b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1791b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1792b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1793b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1794b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1795b5df2d14SHong Zhang 
1796b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1797b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1798b5df2d14SHong Zhang 
1799b5df2d14SHong Zhang .vb
1800b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1801b5df2d14SHong Zhang           -------------------
1802b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1803b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1804b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1805b5df2d14SHong Zhang           -------------------
1806b5df2d14SHong Zhang .ve
1807b5df2d14SHong Zhang 
1808b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1809b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18106d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18116d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1812b5df2d14SHong Zhang 
18136d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18146d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1815b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1816b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1817b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1818b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1819b5df2d14SHong Zhang    matrices.
1820b5df2d14SHong Zhang 
1821b5df2d14SHong Zhang    Level: intermediate
1822b5df2d14SHong Zhang 
1823b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1824b5df2d14SHong Zhang 
1825b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1826b5df2d14SHong Zhang @*/
1827ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[])
1828b5df2d14SHong Zhang {
1829ca01db9bSBarry Smith   int ierr,(*f)(Mat,int,int,const int[],int,const int[]);
1830b5df2d14SHong Zhang 
1831b5df2d14SHong Zhang   PetscFunctionBegin;
1832a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1833a23d5eceSKris Buschelman   if (f) {
1834a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1835b5df2d14SHong Zhang   }
1836b5df2d14SHong Zhang   PetscFunctionReturn(0);
1837b5df2d14SHong Zhang }
1838b5df2d14SHong Zhang 
18394a2ae208SSatish Balay #undef __FUNCT__
18404a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1841a30f8f8cSSatish Balay /*@C
1842a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1843a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1844a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1845a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1846a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1847a30f8f8cSSatish Balay 
1848a30f8f8cSSatish Balay    Collective on MPI_Comm
1849a30f8f8cSSatish Balay 
1850a30f8f8cSSatish Balay    Input Parameters:
1851a30f8f8cSSatish Balay +  comm - MPI communicator
1852a30f8f8cSSatish Balay .  bs   - size of blockk
1853a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1854a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1855a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1856a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1857a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1858a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1859a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1860a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1861a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1862a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1863a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
18646d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
18656d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
18666d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1867a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1868a30f8f8cSSatish Balay            submatrix (same for all local rows).
1869a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1870a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1871a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1872a30f8f8cSSatish Balay 
1873a30f8f8cSSatish Balay    Output Parameter:
1874a30f8f8cSSatish Balay .  A - the matrix
1875a30f8f8cSSatish Balay 
1876a30f8f8cSSatish Balay    Options Database Keys:
1877a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1878a30f8f8cSSatish Balay                      block calculations (much slower)
1879a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1880a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1881a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1882a30f8f8cSSatish Balay 
1883a30f8f8cSSatish Balay    Notes:
1884a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1885a30f8f8cSSatish Balay    (possibly both).
1886a30f8f8cSSatish Balay 
1887a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1888a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1889a30f8f8cSSatish Balay 
1890a30f8f8cSSatish Balay    Storage Information:
1891a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1892a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1893a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1894a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1895a30f8f8cSSatish Balay 
1896a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1897a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1898a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1899a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1900a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1901a30f8f8cSSatish Balay 
1902a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1903a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1904a30f8f8cSSatish Balay 
1905a30f8f8cSSatish Balay .vb
1906a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1907a30f8f8cSSatish Balay           -------------------
1908a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1909a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1910a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1911a30f8f8cSSatish Balay           -------------------
1912a30f8f8cSSatish Balay .ve
1913a30f8f8cSSatish Balay 
1914a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1915a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19166d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19176d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1918a30f8f8cSSatish Balay 
19196d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19206d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1921a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1922a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1923a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1924a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1925a30f8f8cSSatish Balay    matrices.
1926a30f8f8cSSatish Balay 
1927a30f8f8cSSatish Balay    Level: intermediate
1928a30f8f8cSSatish Balay 
1929a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1930a30f8f8cSSatish Balay 
1931a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1932a30f8f8cSSatish Balay @*/
1933a30f8f8cSSatish Balay 
1934ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A)
1935a30f8f8cSSatish Balay {
1936273d9f13SBarry Smith   int ierr,size;
1937a30f8f8cSSatish Balay 
1938a30f8f8cSSatish Balay   PetscFunctionBegin;
1939b5df2d14SHong Zhang   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
1940273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1941273d9f13SBarry Smith   if (size > 1) {
1942b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
1943b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1944273d9f13SBarry Smith   } else {
1945273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1946273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1947273d9f13SBarry Smith   }
1948a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1949a30f8f8cSSatish Balay }
1950a30f8f8cSSatish Balay 
1951a30f8f8cSSatish Balay 
19524a2ae208SSatish Balay #undef __FUNCT__
19534a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
1954a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1955a30f8f8cSSatish Balay {
1956a30f8f8cSSatish Balay   Mat          mat;
1957a30f8f8cSSatish Balay   Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
1958a30f8f8cSSatish Balay   int          ierr,len=0;
1959a30f8f8cSSatish Balay 
1960a30f8f8cSSatish Balay   PetscFunctionBegin;
1961a30f8f8cSSatish Balay   *newmat       = 0;
1962b5df2d14SHong Zhang   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1963b5df2d14SHong Zhang   ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr);
1964273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
1965b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
1966a30f8f8cSSatish Balay   a->bs  = oldmat->bs;
1967a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
1968a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
1969a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
1970a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
1971a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
1972a30f8f8cSSatish Balay 
1973a30f8f8cSSatish Balay   a->rstart       = oldmat->rstart;
1974a30f8f8cSSatish Balay   a->rend         = oldmat->rend;
1975a30f8f8cSSatish Balay   a->cstart       = oldmat->cstart;
1976a30f8f8cSSatish Balay   a->cend         = oldmat->cend;
1977a30f8f8cSSatish Balay   a->size         = oldmat->size;
1978a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
1979a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
1980a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
1981a30f8f8cSSatish Balay   a->rowindices   = 0;
1982a30f8f8cSSatish Balay   a->rowvalues    = 0;
1983a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
1984a30f8f8cSSatish Balay   a->barray       = 0;
1985a30f8f8cSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
1986a30f8f8cSSatish Balay   a->rend_bs      = oldmat->rend_bs;
1987a30f8f8cSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
1988a30f8f8cSSatish Balay   a->cend_bs      = oldmat->cend_bs;
1989a30f8f8cSSatish Balay 
1990a30f8f8cSSatish Balay   /* hash table stuff */
1991a30f8f8cSSatish Balay   a->ht           = 0;
1992a30f8f8cSSatish Balay   a->hd           = 0;
1993a30f8f8cSSatish Balay   a->ht_size      = 0;
1994a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
1995a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
1996a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
1997a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
1998a30f8f8cSSatish Balay 
199982502324SSatish Balay   ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr);
2000b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ));
2001a30f8f8cSSatish Balay   a->cowners    = a->rowners + a->size + 2;
2002a30f8f8cSSatish Balay   a->rowners_bs = a->cowners + a->size + 2;
2003a30f8f8cSSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
2004a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2005a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
2006a30f8f8cSSatish Balay   if (oldmat->colmap) {
2007a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2008a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2009a30f8f8cSSatish Balay #else
201082502324SSatish Balay     ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2011b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2012a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
2013a30f8f8cSSatish Balay #endif
2014a30f8f8cSSatish Balay   } else a->colmap = 0;
2015a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
201682502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2017b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2018a30f8f8cSSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
2019a30f8f8cSSatish Balay   } else a->garray = 0;
2020a30f8f8cSSatish Balay 
2021a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2022b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
2023a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2024a30f8f8cSSatish Balay 
2025b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
2026a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2027b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
2028a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2029b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2030b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2031a30f8f8cSSatish Balay   *newmat = mat;
2032a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2033a30f8f8cSSatish Balay }
2034a30f8f8cSSatish Balay 
2035a30f8f8cSSatish Balay #include "petscsys.h"
2036a30f8f8cSSatish Balay 
2037273d9f13SBarry Smith EXTERN_C_BEGIN
20384a2ae208SSatish Balay #undef __FUNCT__
20394a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2040b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
2041a30f8f8cSSatish Balay {
2042a30f8f8cSSatish Balay   Mat          A;
2043a30f8f8cSSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
204487828ca2SBarry Smith   PetscScalar  *vals,*buf;
2045a30f8f8cSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
2046a30f8f8cSSatish Balay   MPI_Status   status;
2047a30f8f8cSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
2048a30f8f8cSSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2049a30f8f8cSSatish Balay   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
2050a30f8f8cSSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2051a30f8f8cSSatish Balay   int          dcount,kmax,k,nzcount,tmp;
205227f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
205327fa2452SHong Zhang   PetscTruth   flag;
205427fa2452SHong Zhang #endif
2055a30f8f8cSSatish Balay 
2056a30f8f8cSSatish Balay   PetscFunctionBegin;
2057b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2058a30f8f8cSSatish Balay 
2059a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2060a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2061a30f8f8cSSatish Balay   if (!rank) {
2062b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2063a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2064552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2065a30f8f8cSSatish Balay     if (header[3] < 0) {
206629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2067a30f8f8cSSatish Balay     }
2068a30f8f8cSSatish Balay   }
2069a30f8f8cSSatish Balay 
2070a30f8f8cSSatish Balay   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
2071a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2072a30f8f8cSSatish Balay 
207329bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2074a30f8f8cSSatish Balay 
2075a30f8f8cSSatish Balay   /*
2076a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2077a30f8f8cSSatish Balay      divisible by the blocksize
2078a30f8f8cSSatish Balay   */
2079a30f8f8cSSatish Balay   Mbs        = M/bs;
2080a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2081a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2082a30f8f8cSSatish Balay   else                  Mbs++;
2083a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
2084b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n");
2085a30f8f8cSSatish Balay   }
2086a30f8f8cSSatish Balay 
2087a30f8f8cSSatish Balay   /* determine ownership of all rows */
2088a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2089a30f8f8cSSatish Balay   m          = mbs*bs;
2090b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2091a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2092a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2093a30f8f8cSSatish Balay   rowners[0] = 0;
2094a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2095a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2096a30f8f8cSSatish Balay   rstart = rowners[rank];
2097a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2098a30f8f8cSSatish Balay 
2099a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
210082502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   if (!rank) {
2102b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2104a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
210582502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2106a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2107a30f8f8cSSatish Balay     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2108a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2109a30f8f8cSSatish Balay   } else {
2110a30f8f8cSSatish Balay     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2111a30f8f8cSSatish Balay   }
2112a30f8f8cSSatish Balay 
21130222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2114a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
211582502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2116a30f8f8cSSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
2117a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2118a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2119a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2120a30f8f8cSSatish Balay       }
2121a30f8f8cSSatish Balay     }
2122a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2123a30f8f8cSSatish Balay 
2124a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2125a30f8f8cSSatish Balay     maxnz = 0;
2126a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2127a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2128a30f8f8cSSatish Balay     }
212982502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay 
2131a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2132a30f8f8cSSatish Balay     nz     = procsnz[0];
213382502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2134a30f8f8cSSatish Balay     mycols = ibuf;
2135a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2136a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2137a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2138a30f8f8cSSatish Balay 
2139a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2140a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2141a30f8f8cSSatish Balay       nz   = procsnz[i];
2142a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2143a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
2144a30f8f8cSSatish Balay     }
2145a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2146a30f8f8cSSatish Balay     if (size != 1) {
2147a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2148a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2149a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2150a30f8f8cSSatish Balay       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay     }
2152a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
21530222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2154a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2155a30f8f8cSSatish Balay     nz = 0;
2156a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2157a30f8f8cSSatish Balay       nz += locrowlens[i];
2158a30f8f8cSSatish Balay     }
215982502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
2160a30f8f8cSSatish Balay     mycols = ibuf;
2161a30f8f8cSSatish Balay     /* receive message of column indices*/
2162a30f8f8cSSatish Balay     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2163a30f8f8cSSatish Balay     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
216429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2165a30f8f8cSSatish Balay   }
2166a30f8f8cSSatish Balay 
2167a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
216882502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2169a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
217082502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2171a30f8f8cSSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
2172a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2173a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2174a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2175a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2176a30f8f8cSSatish Balay     dcount  = 0;
2177a30f8f8cSSatish Balay     odcount = 0;
2178a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2179a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2180a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
21810222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2182a30f8f8cSSatish Balay         if (!mask[tmp]) {
2183a30f8f8cSSatish Balay           mask[tmp] = 1;
21840222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
21850222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2186a30f8f8cSSatish Balay         }
2187a30f8f8cSSatish Balay       }
2188a30f8f8cSSatish Balay       rowcount++;
2189a30f8f8cSSatish Balay     }
2190a30f8f8cSSatish Balay 
21910222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
21920222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2193a30f8f8cSSatish Balay 
2194a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2195a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2196a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2197a30f8f8cSSatish Balay   }
2198a30f8f8cSSatish Balay 
2199a30f8f8cSSatish Balay   /* create our matrix */
22007e06b45fSHong Zhang   ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat);
2201bfe19f1aSHong Zhang   CHKERRQ(ierr);
2202a30f8f8cSSatish Balay   A = *newmat;
2203273d9f13SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay 
2205a30f8f8cSSatish Balay   if (!rank) {
220687828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2208a30f8f8cSSatish Balay     nz = procsnz[0];
2209a30f8f8cSSatish Balay     vals = buf;
2210a30f8f8cSSatish Balay     mycols = ibuf;
2211a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2212a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2213a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2214a30f8f8cSSatish Balay 
2215a30f8f8cSSatish Balay     /* insert into matrix */
2216a30f8f8cSSatish Balay     jj      = rstart*bs;
2217a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
22187e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2219a30f8f8cSSatish Balay       mycols += locrowlens[i];
2220a30f8f8cSSatish Balay       vals   += locrowlens[i];
2221a30f8f8cSSatish Balay       jj++;
2222a30f8f8cSSatish Balay     }
22237e06b45fSHong Zhang 
2224a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2225a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2226a30f8f8cSSatish Balay       nz   = procsnz[i];
2227a30f8f8cSSatish Balay       vals = buf;
2228a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay     }
2231a30f8f8cSSatish Balay     /* the last proc */
2232a30f8f8cSSatish Balay     if (size != 1){
2233a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2234a30f8f8cSSatish Balay       vals = buf;
2235a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2237a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     }
2239a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
22407e06b45fSHong Zhang 
2241a30f8f8cSSatish Balay   } else {
2242a30f8f8cSSatish Balay     /* receive numeric values */
224387828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2244a30f8f8cSSatish Balay 
2245a30f8f8cSSatish Balay     /* receive message of values*/
2246a30f8f8cSSatish Balay     vals   = buf;
2247a30f8f8cSSatish Balay     mycols = ibuf;
2248a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
225029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2251a30f8f8cSSatish Balay 
2252a30f8f8cSSatish Balay     /* insert into matrix */
2253a30f8f8cSSatish Balay     jj      = rstart*bs;
2254a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2255a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2256a30f8f8cSSatish Balay       mycols += locrowlens[i];
2257a30f8f8cSSatish Balay       vals   += locrowlens[i];
2258a30f8f8cSSatish Balay       jj++;
2259a30f8f8cSSatish Balay     }
2260a30f8f8cSSatish Balay   }
22617e06b45fSHong Zhang 
2262a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2263a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2264a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2266a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2267a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2268a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2269a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
227027fa2452SHong Zhang #if defined(PETSC_HAVE_SPOOLES)
227127fa2452SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
22720f39d4ecSHong Zhang   if (flag) {
22730f39d4ecSHong Zhang     if (size == 1) {
22740f39d4ecSHong Zhang       ierr = MatUseSpooles_SeqAIJ(A);CHKERRQ(ierr);
22750f39d4ecSHong Zhang     } else {
22760f39d4ecSHong Zhang       ierr = MatUseSpooles_MPISBAIJ(A);CHKERRQ(ierr);
22770f39d4ecSHong Zhang     }
22780f39d4ecSHong Zhang   }
227927fa2452SHong Zhang #endif
228027f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
228127f1aa60SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
228227f1aa60SHong Zhang   if (flag) {
228327f1aa60SHong Zhang       ierr = MatUseMUMPS_MPIAIJ(A);CHKERRQ(ierr);
228427f1aa60SHong Zhang   }
228527f1aa60SHong Zhang #endif
2286a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2287a30f8f8cSSatish Balay }
2288273d9f13SBarry Smith EXTERN_C_END
2289a30f8f8cSSatish Balay 
22904a2ae208SSatish Balay #undef __FUNCT__
22914a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2292a30f8f8cSSatish Balay /*@
2293a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2294a30f8f8cSSatish Balay 
2295a30f8f8cSSatish Balay    Input Parameters:
2296a30f8f8cSSatish Balay .  mat  - the matrix
2297a30f8f8cSSatish Balay .  fact - factor
2298a30f8f8cSSatish Balay 
2299a30f8f8cSSatish Balay    Collective on Mat
2300a30f8f8cSSatish Balay 
2301a30f8f8cSSatish Balay    Level: advanced
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay   Notes:
2304a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2305a30f8f8cSSatish Balay 
2306a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2307a30f8f8cSSatish Balay 
2308a30f8f8cSSatish Balay .seealso: MatSetOption()
2309a30f8f8cSSatish Balay @*/
2310a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2311a30f8f8cSSatish Balay {
2312a30f8f8cSSatish Balay   PetscFunctionBegin;
231329bbc08cSBarry Smith   SETERRQ(1,"Function not yet written for SBAIJ format");
231496e2eec7SHong Zhang   /* PetscFunctionReturn(0); */
2315a30f8f8cSSatish Balay }
231624d5174aSHong Zhang 
23174a2ae208SSatish Balay #undef __FUNCT__
23184a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ"
231924d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v)
232024d5174aSHong Zhang {
232124d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data;
2322f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ*)(a->B)->data;
2323ca54ac64SHong Zhang   PetscReal    atmp;
232487828ca2SBarry Smith   PetscReal    *work,*svalues,*rvalues;
2325ca54ac64SHong Zhang   int          ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
2326154bba0bSHong Zhang   int          rank,size,*rowners_bs,dest,count,source;
232787828ca2SBarry Smith   PetscScalar  *va;
23288a1c53f2SBarry Smith   MatScalar    *ba;
2329f4c0e9e4SHong Zhang   MPI_Status   stat;
233024d5174aSHong Zhang 
233124d5174aSHong Zhang   PetscFunctionBegin;
2332d36791b2SHong Zhang   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
2333f4c0e9e4SHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2334f4c0e9e4SHong Zhang 
233556faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
233656faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2337f4c0e9e4SHong Zhang 
2338f4c0e9e4SHong Zhang   bs   = a->bs;
2339f4c0e9e4SHong Zhang   mbs  = a->mbs;
2340f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2341f4c0e9e4SHong Zhang   ba   = b->a;
2342f4c0e9e4SHong Zhang   bi   = b->i;
2343f4c0e9e4SHong Zhang   bj   = b->j;
2344ca54ac64SHong Zhang   /*
234556faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs);
234656faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
2347ca54ac64SHong Zhang   */
2348f4c0e9e4SHong Zhang 
2349f4c0e9e4SHong Zhang   /* find ownerships */
2350f4c0e9e4SHong Zhang   rowners_bs = a->rowners_bs;
2351f4c0e9e4SHong Zhang   /*
235204d41228SHong Zhang   if (!rank){
235304d41228SHong Zhang     for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]);
2354f4c0e9e4SHong Zhang   }
2355f4c0e9e4SHong Zhang   */
2356f4c0e9e4SHong Zhang 
2357f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
235882502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2359ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2360f4c0e9e4SHong Zhang 
2361f4c0e9e4SHong Zhang   /* row_max for B */
2362b8475685SHong Zhang   if (rank != size-1){
2363f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2364f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2365f4c0e9e4SHong Zhang       brow  = bs*i;
2366f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2367f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2368f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2369ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
237004d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2371ca54ac64SHong Zhang           /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */
2372f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2373f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2374ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2375f4c0e9e4SHong Zhang             /* printf("val[%d,%d]: %g\n",row,col,atmp); */
2376ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2377f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2378f4c0e9e4SHong Zhang           }
2379f4c0e9e4SHong Zhang         }
2380f4c0e9e4SHong Zhang         bj++;
2381f4c0e9e4SHong Zhang       }
2382f4c0e9e4SHong Zhang     }
238304d41228SHong Zhang     /*
238404d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank);
238504d41228SHong Zhang       for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]);
238604d41228SHong Zhang       PetscPrintf(PETSC_COMM_SELF,"[%d]: \n");
238704d41228SHong Zhang       */
2388f4c0e9e4SHong Zhang 
2389f4c0e9e4SHong Zhang     /* send values to its owners */
2390f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2391f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2392ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
239356faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2394ca54ac64SHong Zhang       /*
239556faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]);
239656faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2397ca54ac64SHong Zhang       */
2398ca54ac64SHong Zhang     }
2399f4c0e9e4SHong Zhang   }
2400f4c0e9e4SHong Zhang 
2401f4c0e9e4SHong Zhang   /* receive values */
2402ca54ac64SHong Zhang   if (rank){
2403f4c0e9e4SHong Zhang     rvalues = work;
2404ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2405f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
240656faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2407f4c0e9e4SHong Zhang       /* process values */
2408f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2409ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2410f4c0e9e4SHong Zhang       }
2411ca54ac64SHong Zhang       /*
241256faa61eSBarry Smith       PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]);
241356faa61eSBarry Smith       PetscSynchronizedFlush(A->comm);
2414ca54ac64SHong Zhang       */
2415f4c0e9e4SHong Zhang     }
2416ca54ac64SHong Zhang   }
2417f4c0e9e4SHong Zhang 
2418f4c0e9e4SHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2419ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
242024d5174aSHong Zhang   PetscFunctionReturn(0);
242124d5174aSHong Zhang }
24222798e883SHong Zhang 
24232798e883SHong Zhang #undef __FUNCT__
24242798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
2425c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
24262798e883SHong Zhang {
24272798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2428ffe4fb16SHong Zhang   int            ierr,mbs=mat->mbs,bs=mat->bs;
2429ffe4fb16SHong Zhang   PetscScalar    mone=-1.0,*x,*b,*ptr,zero=0.0;
2430ffe4fb16SHong Zhang   Vec            bb1;
2431ffe4fb16SHong Zhang 
2432ffe4fb16SHong Zhang   PetscFunctionBegin;
2433ffe4fb16SHong Zhang   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
2434ffe4fb16SHong Zhang   if (bs > 1)
2435ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2436ffe4fb16SHong Zhang 
2437ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2438ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2439ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2440ffe4fb16SHong Zhang       its--;
2441ffe4fb16SHong Zhang     }
2442ffe4fb16SHong Zhang 
2443ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2444ffe4fb16SHong Zhang     while (its--){
2445ffe4fb16SHong Zhang 
2446ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2447ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2448ffe4fb16SHong Zhang 
2449ffe4fb16SHong Zhang       /* copy xx into slvec0a */
2450ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2451ffe4fb16SHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2452ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2453ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2454ffe4fb16SHong Zhang 
2455ffe4fb16SHong Zhang       ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr);
2456ffe4fb16SHong Zhang 
2457ffe4fb16SHong Zhang       /* copy bb into slvec1a */
2458ffe4fb16SHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2459ffe4fb16SHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2460ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2461ffe4fb16SHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2462ffe4fb16SHong Zhang 
2463ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2464ffe4fb16SHong Zhang       ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr);
2465ffe4fb16SHong Zhang 
2466ffe4fb16SHong Zhang       ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2467ffe4fb16SHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2468ffe4fb16SHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2469ffe4fb16SHong Zhang       ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr);
2470ffe4fb16SHong Zhang 
2471ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2472ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2473ffe4fb16SHong Zhang 
2474ffe4fb16SHong Zhang       /* local diagonal sweep */
2475ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2476ffe4fb16SHong Zhang     }
2477ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2478ffe4fb16SHong Zhang   } else {
2479ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2480ffe4fb16SHong Zhang   }
2481ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2482ffe4fb16SHong Zhang }
2483ffe4fb16SHong Zhang 
2484ffe4fb16SHong Zhang #undef __FUNCT__
2485ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
2486ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
2487ffe4fb16SHong Zhang {
2488ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
24892798e883SHong Zhang   int            ierr;
2490d05c616dSSatish Balay   PetscScalar    mone=-1.0;
24912798e883SHong Zhang   Vec            lvec1,bb1;
24922798e883SHong Zhang 
24932798e883SHong Zhang   PetscFunctionBegin;
249491723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
24952798e883SHong Zhang   if (mat->bs > 1)
24962798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
24972798e883SHong Zhang 
2498c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
24992798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2500bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25012798e883SHong Zhang       its--;
25022798e883SHong Zhang     }
25032798e883SHong Zhang 
25042798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25052798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25062798e883SHong Zhang     while (its--){
25072798e883SHong Zhang       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25082798e883SHong Zhang 
25092798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25102798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
25112798e883SHong Zhang       ierr = VecScale(&mone,lvec1);CHKERRQ(ierr);
25122798e883SHong Zhang 
25132798e883SHong Zhang       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
25142798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
25152798e883SHong Zhang       ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25162798e883SHong Zhang 
25172798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
25182798e883SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
25192798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25202798e883SHong Zhang 
25212798e883SHong Zhang       ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr);
25222798e883SHong Zhang 
2523c14dc6b6SHong Zhang       /* diagonal sweep */
2524bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25252798e883SHong Zhang     }
25262798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25272798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2528c14dc6b6SHong Zhang   } else {
2529c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2530c14dc6b6SHong Zhang   }
25312798e883SHong Zhang   PetscFunctionReturn(0);
25322798e883SHong Zhang }
25332798e883SHong Zhang 
2534