173f4d377SMatthew Knepley /*$Id: mpisbaij.c,v 1.61 2001/08/10 03:31:37 bsmith Exp $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 840781036SHong Zhang extern int MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10d94109b8SHong Zhang extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS[],int); 11f15d580aSBarry Smith extern int MatGetValues_SeqSBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 12e249d750SSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int[],PetscScalar []); 13f15d580aSBarry Smith extern int MatSetValues_SeqSBAIJ(Mat,int,const int [],int,const int [],const PetscScalar [],InsertMode); 14f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 15e249d750SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 1687828ca2SBarry Smith extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 1787828ca2SBarry Smith extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,PetscScalar**); 18a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 1987828ca2SBarry Smith extern int MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 2087828ca2SBarry Smith extern int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 21d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 22c14dc6b6SHong Zhang extern int MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec); 23a30f8f8cSSatish Balay 24a30f8f8cSSatish Balay /* UGLY, ugly, ugly 2587828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 26a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 27a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 28a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 29a30f8f8cSSatish Balay into the single precision data structures. 30a30f8f8cSSatish Balay */ 31a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 32f15d580aSBarry Smith extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 33f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 34f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 35f15d580aSBarry Smith extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 36f15d580aSBarry Smith extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,const int[],int,const int[],const MatScalar[],InsertMode); 37a30f8f8cSSatish Balay #else 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 41a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 42a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 43a30f8f8cSSatish Balay #endif 44a30f8f8cSSatish Balay 45a30f8f8cSSatish Balay EXTERN_C_BEGIN 464a2ae208SSatish Balay #undef __FUNCT__ 474a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 48a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 49a30f8f8cSSatish Balay { 50f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 51a30f8f8cSSatish Balay int ierr; 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay PetscFunctionBegin; 54a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 55a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 56a30f8f8cSSatish Balay PetscFunctionReturn(0); 57a30f8f8cSSatish Balay } 58a30f8f8cSSatish Balay EXTERN_C_END 59a30f8f8cSSatish Balay 60a30f8f8cSSatish Balay EXTERN_C_BEGIN 614a2ae208SSatish Balay #undef __FUNCT__ 624a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 63a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 64a30f8f8cSSatish Balay { 65f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 66a30f8f8cSSatish Balay int ierr; 67a30f8f8cSSatish Balay 68a30f8f8cSSatish Balay PetscFunctionBegin; 69a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 70a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 71a30f8f8cSSatish Balay PetscFunctionReturn(0); 72a30f8f8cSSatish Balay } 73a30f8f8cSSatish Balay EXTERN_C_END 74a30f8f8cSSatish Balay 75a30f8f8cSSatish Balay 76a30f8f8cSSatish Balay #define CHUNKSIZE 10 77a30f8f8cSSatish Balay 78a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 79a30f8f8cSSatish Balay { \ 80a30f8f8cSSatish Balay \ 81a30f8f8cSSatish Balay brow = row/bs; \ 82a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 84a30f8f8cSSatish Balay bcol = col/bs; \ 85a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 86a30f8f8cSSatish Balay low = 0; high = nrow; \ 87a30f8f8cSSatish Balay while (high-low > 3) { \ 88a30f8f8cSSatish Balay t = (low+high)/2; \ 89a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 90a30f8f8cSSatish Balay else low = t; \ 91a30f8f8cSSatish Balay } \ 92a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 93a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 94a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 95a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97a30f8f8cSSatish Balay else *bap = value; \ 98a30f8f8cSSatish Balay goto a_noinsert; \ 99a30f8f8cSSatish Balay } \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 102a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 103a30f8f8cSSatish Balay if (nrow >= rmax) { \ 104a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 105a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 106a30f8f8cSSatish Balay MatScalar *new_a; \ 107a30f8f8cSSatish Balay \ 108a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 109a30f8f8cSSatish Balay \ 110a30f8f8cSSatish Balay /* malloc new storage space */ \ 111a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 11282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 113a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 114a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 115a30f8f8cSSatish Balay \ 116a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 117a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 118a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 119a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 120a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 121a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 122a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12387828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 125a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 126a30f8f8cSSatish Balay /* free up old matrix storage */ \ 127a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 128a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 129a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 130a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 131a30f8f8cSSatish Balay } \ 132a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 133a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 134a30f8f8cSSatish Balay \ 135a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 136a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 137b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 1386c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; \ 139a30f8f8cSSatish Balay a->reallocs++; \ 1406c6c5352SBarry Smith a->nz++; \ 141a30f8f8cSSatish Balay } \ 142a30f8f8cSSatish Balay N = nrow++ - 1; \ 143a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 144a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 145a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 146a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 147a30f8f8cSSatish Balay } \ 148a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 149a30f8f8cSSatish Balay rp[_i] = bcol; \ 150a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151a30f8f8cSSatish Balay a_noinsert:; \ 152a30f8f8cSSatish Balay ailen[brow] = nrow; \ 153a30f8f8cSSatish Balay } 154a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 155a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 156a30f8f8cSSatish Balay { \ 157a30f8f8cSSatish Balay brow = row/bs; \ 158a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 159a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 160a30f8f8cSSatish Balay bcol = col/bs; \ 161a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 162a30f8f8cSSatish Balay low = 0; high = nrow; \ 163a30f8f8cSSatish Balay while (high-low > 3) { \ 164a30f8f8cSSatish Balay t = (low+high)/2; \ 165a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 166a30f8f8cSSatish Balay else low = t; \ 167a30f8f8cSSatish Balay } \ 168a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 169a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 170a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 171a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 172a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 173a30f8f8cSSatish Balay else *bap = value; \ 174a30f8f8cSSatish Balay goto b_noinsert; \ 175a30f8f8cSSatish Balay } \ 176a30f8f8cSSatish Balay } \ 177a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 178a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 179a30f8f8cSSatish Balay if (nrow >= rmax) { \ 180a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 181a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 182a30f8f8cSSatish Balay MatScalar *new_a; \ 183a30f8f8cSSatish Balay \ 184a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 185a30f8f8cSSatish Balay \ 186a30f8f8cSSatish Balay /* malloc new storage space */ \ 187a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 18882502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 189a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 190a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 191a30f8f8cSSatish Balay \ 192a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 193a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 194a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 195a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 196a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 197a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 198a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 199a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 200a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 201a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 202a30f8f8cSSatish Balay /* free up old matrix storage */ \ 203a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 204a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 205a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 207a30f8f8cSSatish Balay } \ 208a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 209a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 210a30f8f8cSSatish Balay \ 211a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 212a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 213b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 214a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 215a30f8f8cSSatish Balay b->reallocs++; \ 216a30f8f8cSSatish Balay b->nz++; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay N = nrow++ - 1; \ 219a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 220a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 221a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 222a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 223a30f8f8cSSatish Balay } \ 224a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 225a30f8f8cSSatish Balay rp[_i] = bcol; \ 226a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 227a30f8f8cSSatish Balay b_noinsert:; \ 228a30f8f8cSSatish Balay bilen[brow] = nrow; \ 229a30f8f8cSSatish Balay } 230a30f8f8cSSatish Balay #endif 231a30f8f8cSSatish Balay 232a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2334a2ae208SSatish Balay #undef __FUNCT__ 2344a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ" 235f15d580aSBarry Smith int MatSetValues_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 236a30f8f8cSSatish Balay { 237a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 238a30f8f8cSSatish Balay int ierr,i,N = m*n; 239a30f8f8cSSatish Balay MatScalar *vsingle; 240a30f8f8cSSatish Balay 241a30f8f8cSSatish Balay PetscFunctionBegin; 242a30f8f8cSSatish Balay if (N > b->setvalueslen) { 243a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 245a30f8f8cSSatish Balay b->setvalueslen = N; 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 248a30f8f8cSSatish Balay 249a30f8f8cSSatish Balay for (i=0; i<N; i++) { 250a30f8f8cSSatish Balay vsingle[i] = v[i]; 251a30f8f8cSSatish Balay } 252a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 253a30f8f8cSSatish Balay PetscFunctionReturn(0); 254a30f8f8cSSatish Balay } 255a30f8f8cSSatish Balay 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 258f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 259a30f8f8cSSatish Balay { 260a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 261a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 262a30f8f8cSSatish Balay MatScalar *vsingle; 263a30f8f8cSSatish Balay 264a30f8f8cSSatish Balay PetscFunctionBegin; 265a30f8f8cSSatish Balay if (N > b->setvalueslen) { 266a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 26782502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 268a30f8f8cSSatish Balay b->setvalueslen = N; 269a30f8f8cSSatish Balay } 270a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 271a30f8f8cSSatish Balay for (i=0; i<N; i++) { 272a30f8f8cSSatish Balay vsingle[i] = v[i]; 273a30f8f8cSSatish Balay } 274a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 275a30f8f8cSSatish Balay PetscFunctionReturn(0); 276a30f8f8cSSatish Balay } 277a30f8f8cSSatish Balay 2784a2ae208SSatish Balay #undef __FUNCT__ 2794a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT" 280f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 281a30f8f8cSSatish Balay { 282a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 283a30f8f8cSSatish Balay int ierr,i,N = m*n; 284a30f8f8cSSatish Balay MatScalar *vsingle; 285a30f8f8cSSatish Balay 286a30f8f8cSSatish Balay PetscFunctionBegin; 28729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 2884d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 289a30f8f8cSSatish Balay } 290a30f8f8cSSatish Balay 2914a2ae208SSatish Balay #undef __FUNCT__ 2924a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT" 293f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 294a30f8f8cSSatish Balay { 295a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 296a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 297a30f8f8cSSatish Balay MatScalar *vsingle; 298a30f8f8cSSatish Balay 299a30f8f8cSSatish Balay PetscFunctionBegin; 30029bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3014d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 302a30f8f8cSSatish Balay } 303a30f8f8cSSatish Balay #endif 304a30f8f8cSSatish Balay 305a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 306a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 307a30f8f8cSSatish Balay */ 3084a2ae208SSatish Balay #undef __FUNCT__ 309e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 310f15d580aSBarry Smith int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 311a30f8f8cSSatish Balay { 312a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 313a30f8f8cSSatish Balay MatScalar value; 314b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 315a30f8f8cSSatish Balay int ierr,i,j,row,col; 316b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 317a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 318a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 319a30f8f8cSSatish Balay 320a30f8f8cSSatish Balay /* Some Variables required in the macro */ 321a30f8f8cSSatish Balay Mat A = baij->A; 322a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 323a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 324a30f8f8cSSatish Balay MatScalar *aa=a->a; 325a30f8f8cSSatish Balay 326a30f8f8cSSatish Balay Mat B = baij->B; 327a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 328a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 329a30f8f8cSSatish Balay MatScalar *ba=b->a; 330a30f8f8cSSatish Balay 331a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 332a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 333a30f8f8cSSatish Balay MatScalar *ap,*bap; 334a30f8f8cSSatish Balay 335a30f8f8cSSatish Balay /* for stash */ 336f65c83cfSHong Zhang int n_loc, *in_loc=0; 337f65c83cfSHong Zhang MatScalar *v_loc=0; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay PetscFunctionBegin; 340a30f8f8cSSatish Balay 341a30f8f8cSSatish Balay if(!baij->donotstash){ 34282502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 34382502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 344a30f8f8cSSatish Balay } 345a30f8f8cSSatish Balay 346a30f8f8cSSatish Balay for (i=0; i<m; i++) { 347a30f8f8cSSatish Balay if (im[i] < 0) continue; 348a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 349590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 350a30f8f8cSSatish Balay #endif 351a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 352a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 353a30f8f8cSSatish Balay for (j=0; j<n; j++) { 354f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 355a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 356a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 357a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 358a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 359a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 360a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 361a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 362a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 363a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 364590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[j],mat->N-1);} 365a30f8f8cSSatish Balay #endif 366a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 367a30f8f8cSSatish Balay if (mat->was_assembled) { 368a30f8f8cSSatish Balay if (!baij->colmap) { 369653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 370a30f8f8cSSatish Balay } 371a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 372a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 37371730473SSatish Balay col = col - 1; 374a30f8f8cSSatish Balay #else 37571730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 376a30f8f8cSSatish Balay #endif 377a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 378a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 379a30f8f8cSSatish Balay col = in[j]; 380a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 381a30f8f8cSSatish Balay B = baij->B; 382a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 383a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 384a30f8f8cSSatish Balay ba=b->a; 38571730473SSatish Balay } else col += in[j]%bs; 386a30f8f8cSSatish Balay } else col = in[j]; 387a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 388a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 389a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 390a30f8f8cSSatish Balay } 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay } else { /* off processor entry */ 393a30f8f8cSSatish Balay if (!baij->donotstash) { 394a30f8f8cSSatish Balay n_loc = 0; 395a30f8f8cSSatish Balay for (j=0; j<n; j++){ 396f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 397a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 398a30f8f8cSSatish Balay if (roworiented) { 399a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 400a30f8f8cSSatish Balay } else { 401a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay n_loc++; 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 406a30f8f8cSSatish Balay } 407a30f8f8cSSatish Balay } 408a30f8f8cSSatish Balay } 409a30f8f8cSSatish Balay 410a30f8f8cSSatish Balay if(!baij->donotstash){ 411a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 412a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 413a30f8f8cSSatish Balay } 414a30f8f8cSSatish Balay PetscFunctionReturn(0); 415a30f8f8cSSatish Balay } 416a30f8f8cSSatish Balay 4174a2ae208SSatish Balay #undef __FUNCT__ 418e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar" 419f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 420a30f8f8cSSatish Balay { 4210880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 422f15d580aSBarry Smith const MatScalar *value; 423f15d580aSBarry Smith MatScalar *barray=baij->barray; 4240880e062SHong Zhang PetscTruth roworiented = baij->roworiented; 4250880e062SHong Zhang int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 4260880e062SHong Zhang int rend=baij->rend,cstart=baij->cstart,stepval; 4270880e062SHong Zhang int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 4280880e062SHong Zhang 429a30f8f8cSSatish Balay PetscFunctionBegin; 4300880e062SHong Zhang if(!barray) { 4310880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 4320880e062SHong Zhang baij->barray = barray; 4330880e062SHong Zhang } 4340880e062SHong Zhang 4350880e062SHong Zhang if (roworiented) { 4360880e062SHong Zhang stepval = (n-1)*bs; 4370880e062SHong Zhang } else { 4380880e062SHong Zhang stepval = (m-1)*bs; 4390880e062SHong Zhang } 4400880e062SHong Zhang for (i=0; i<m; i++) { 4410880e062SHong Zhang if (im[i] < 0) continue; 4420880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 443590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 4440880e062SHong Zhang #endif 4450880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 4460880e062SHong Zhang row = im[i] - rstart; 4470880e062SHong Zhang for (j=0; j<n; j++) { 4480880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 4490880e062SHong Zhang if ((roworiented) && (n == 1)) { 450f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 4510880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 452f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 4530880e062SHong Zhang } else { /* Here a copy is required */ 4540880e062SHong Zhang if (roworiented) { 4550880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 4560880e062SHong Zhang } else { 4570880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 4580880e062SHong Zhang } 4590880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 4600880e062SHong Zhang for (jj=0; jj<bs; jj++) { 4610880e062SHong Zhang *barray++ = *value++; 4620880e062SHong Zhang } 4630880e062SHong Zhang } 4640880e062SHong Zhang barray -=bs2; 4650880e062SHong Zhang } 4660880e062SHong Zhang 4670880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 4680880e062SHong Zhang col = in[j] - cstart; 4690880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 4700880e062SHong Zhang } 4710880e062SHong Zhang else if (in[j] < 0) continue; 4720880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 473590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 4740880e062SHong Zhang #endif 4750880e062SHong Zhang else { 4760880e062SHong Zhang if (mat->was_assembled) { 4770880e062SHong Zhang if (!baij->colmap) { 478653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 4790880e062SHong Zhang } 4800880e062SHong Zhang 4810880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 4820880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4830880e062SHong Zhang { int data; 4840880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4850880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4860880e062SHong Zhang } 4870880e062SHong Zhang #else 4880880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 4890880e062SHong Zhang #endif 4900880e062SHong Zhang #endif 4910880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 4920880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 4930880e062SHong Zhang col = (col - 1)/bs; 4940880e062SHong Zhang #else 4950880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 4960880e062SHong Zhang #endif 4970880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 4980880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 4990880e062SHong Zhang col = in[j]; 5000880e062SHong Zhang } 5010880e062SHong Zhang } 5020880e062SHong Zhang else col = in[j]; 503e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 5040880e062SHong Zhang } 5050880e062SHong Zhang } 5060880e062SHong Zhang } else { 5070880e062SHong Zhang if (!baij->donotstash) { 5080880e062SHong Zhang if (roworiented) { 5090880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5100880e062SHong Zhang } else { 5110880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5120880e062SHong Zhang } 5130880e062SHong Zhang } 5140880e062SHong Zhang } 5150880e062SHong Zhang } 5160880e062SHong Zhang PetscFunctionReturn(0); 517a30f8f8cSSatish Balay } 518a30f8f8cSSatish Balay 519a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 520a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 521a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 522a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5234a2ae208SSatish Balay #undef __FUNCT__ 5244a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ_HT_MatScalar" 525f15d580aSBarry Smith int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 526a30f8f8cSSatish Balay { 527a30f8f8cSSatish Balay PetscFunctionBegin; 52829bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 52996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 530a30f8f8cSSatish Balay } 531a30f8f8cSSatish Balay 5324a2ae208SSatish Balay #undef __FUNCT__ 5334a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 534f15d580aSBarry Smith int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 535a30f8f8cSSatish Balay { 536a30f8f8cSSatish Balay PetscFunctionBegin; 53729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 53896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 539a30f8f8cSSatish Balay } 540a30f8f8cSSatish Balay 5414a2ae208SSatish Balay #undef __FUNCT__ 5424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 543f15d580aSBarry Smith int MatGetValues_MPISBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 544a30f8f8cSSatish Balay { 545f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 546a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 547a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 548a30f8f8cSSatish Balay 549a30f8f8cSSatish Balay PetscFunctionBegin; 550a30f8f8cSSatish Balay for (i=0; i<m; i++) { 551590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 552590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 553a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 554a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 555a30f8f8cSSatish Balay for (j=0; j<n; j++) { 556590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %d",idxn[j]); 557590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 558a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 559a30f8f8cSSatish Balay col = idxn[j] - bscstart; 560c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 561a30f8f8cSSatish Balay } else { 562a30f8f8cSSatish Balay if (!baij->colmap) { 563653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 564a30f8f8cSSatish Balay } 565a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 566a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 567a30f8f8cSSatish Balay data --; 568a30f8f8cSSatish Balay #else 569a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 570a30f8f8cSSatish Balay #endif 571a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 572a30f8f8cSSatish Balay else { 573a30f8f8cSSatish Balay col = data + idxn[j]%bs; 574e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay } 577a30f8f8cSSatish Balay } 578a30f8f8cSSatish Balay } else { 57929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 580a30f8f8cSSatish Balay } 581a30f8f8cSSatish Balay } 582a30f8f8cSSatish Balay PetscFunctionReturn(0); 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay 5854a2ae208SSatish Balay #undef __FUNCT__ 5864a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 587a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 588a30f8f8cSSatish Balay { 589a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 590bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 591bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 592a30f8f8cSSatish Balay int ierr; 593a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 594a30f8f8cSSatish Balay 595a30f8f8cSSatish Balay PetscFunctionBegin; 596a30f8f8cSSatish Balay if (baij->size == 1) { 597a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 598a30f8f8cSSatish Balay } else { 599a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 600f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 601a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 602a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 603a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 604a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 605a30f8f8cSSatish Balay /* 60656faa61eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 60756faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 608a30f8f8cSSatish Balay */ 609d7d1e502SBarry Smith ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 610a30f8f8cSSatish Balay /* 61156faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 61256faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); */ 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 615a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 616a30f8f8cSSatish Balay } else { 61729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 618a30f8f8cSSatish Balay } 619a30f8f8cSSatish Balay } 620a30f8f8cSSatish Balay PetscFunctionReturn(0); 621a30f8f8cSSatish Balay } 622a30f8f8cSSatish Balay 623a30f8f8cSSatish Balay /* 624a30f8f8cSSatish Balay Creates the hash table, and sets the table 625a30f8f8cSSatish Balay This table is created only once. 626a30f8f8cSSatish Balay If new entried need to be added to the matrix 627a30f8f8cSSatish Balay then the hash table has to be destroyed and 628a30f8f8cSSatish Balay recreated. 629a30f8f8cSSatish Balay */ 6304a2ae208SSatish Balay #undef __FUNCT__ 6314a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPISBAIJ_Private" 632a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 633a30f8f8cSSatish Balay { 634a30f8f8cSSatish Balay PetscFunctionBegin; 63529bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 63696e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 637a30f8f8cSSatish Balay } 638a30f8f8cSSatish Balay 6394a2ae208SSatish Balay #undef __FUNCT__ 6404a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 641a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 642a30f8f8cSSatish Balay { 643a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 644a30f8f8cSSatish Balay int ierr,nstash,reallocs; 645a30f8f8cSSatish Balay InsertMode addv; 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay PetscFunctionBegin; 648a30f8f8cSSatish Balay if (baij->donotstash) { 649a30f8f8cSSatish Balay PetscFunctionReturn(0); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 653a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 654a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 65529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 656a30f8f8cSSatish Balay } 657a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 658a30f8f8cSSatish Balay 659a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 660a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 661a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 662b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 663a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 664b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 665a30f8f8cSSatish Balay PetscFunctionReturn(0); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay 6684a2ae208SSatish Balay #undef __FUNCT__ 6694a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 670a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 671a30f8f8cSSatish Balay { 672a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 673a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 674a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 675a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 676a30f8f8cSSatish Balay int *row,*col,other_disassembled; 677a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 678a30f8f8cSSatish Balay MatScalar *val; 679a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 680a30f8f8cSSatish Balay 681a30f8f8cSSatish Balay PetscFunctionBegin; 682a30f8f8cSSatish Balay 683a30f8f8cSSatish Balay if (!baij->donotstash) { 684a30f8f8cSSatish Balay while (1) { 685a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 686a30f8f8cSSatish Balay /* 68756faa61eSBarry Smith PetscSynchronizedPrintf(mat->comm,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 68856faa61eSBarry Smith PetscSynchronizedFlush(mat->comm); 689a30f8f8cSSatish Balay */ 690a30f8f8cSSatish Balay if (!flg) break; 691a30f8f8cSSatish Balay 692a30f8f8cSSatish Balay for (i=0; i<n;) { 693a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 694a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 695a30f8f8cSSatish Balay if (j < n) ncols = j-i; 696a30f8f8cSSatish Balay else ncols = n-i; 697a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 698a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 699a30f8f8cSSatish Balay i = j; 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 703a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 704a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 705a30f8f8cSSatish Balay restore the original flags */ 706a30f8f8cSSatish Balay r1 = baij->roworiented; 707a30f8f8cSSatish Balay r2 = a->roworiented; 708a30f8f8cSSatish Balay r3 = b->roworiented; 709a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 710a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 711a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 712a30f8f8cSSatish Balay while (1) { 713a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 714a30f8f8cSSatish Balay if (!flg) break; 715a30f8f8cSSatish Balay 716a30f8f8cSSatish Balay for (i=0; i<n;) { 717a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 718a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 719a30f8f8cSSatish Balay if (j < n) ncols = j-i; 720a30f8f8cSSatish Balay else ncols = n-i; 721a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 722a30f8f8cSSatish Balay i = j; 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 726a30f8f8cSSatish Balay baij->roworiented = r1; 727a30f8f8cSSatish Balay a->roworiented = r2; 728a30f8f8cSSatish Balay b->roworiented = r3; 729a30f8f8cSSatish Balay } 730a30f8f8cSSatish Balay 731a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 732a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 733a30f8f8cSSatish Balay 734a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 735a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 736a30f8f8cSSatish Balay /* 737a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 738a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 739a30f8f8cSSatish Balay */ 740a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 741a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 742a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 743c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 744a30f8f8cSSatish Balay } 745a30f8f8cSSatish Balay } 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 74840781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 749a30f8f8cSSatish Balay } 750a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 751a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 752a30f8f8cSSatish Balay 753a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 754a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 755f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 756a30f8f8cSSatish Balay baij->ht_total_ct = 0; 757a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 758a30f8f8cSSatish Balay } 759a30f8f8cSSatish Balay #endif 760a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 761c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 762a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 763a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 764a30f8f8cSSatish Balay } 765a30f8f8cSSatish Balay 766a30f8f8cSSatish Balay if (baij->rowvalues) { 767a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 768a30f8f8cSSatish Balay baij->rowvalues = 0; 769a30f8f8cSSatish Balay } 7705222a1afSHong Zhang 771a30f8f8cSSatish Balay PetscFunctionReturn(0); 772a30f8f8cSSatish Balay } 773a30f8f8cSSatish Balay 7744a2ae208SSatish Balay #undef __FUNCT__ 7754a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 776b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 777a30f8f8cSSatish Balay { 778a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 779fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 780a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 781b0a32e0cSBarry Smith PetscViewer sviewer; 782f3ef73ceSBarry Smith PetscViewerFormat format; 783a30f8f8cSSatish Balay 784a30f8f8cSSatish Balay PetscFunctionBegin; 785b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 786fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 787a30f8f8cSSatish Balay if (isascii) { 788b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 789456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 790a30f8f8cSSatish Balay MatInfo info; 791a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 792a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 793b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 794b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 795a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 796a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 797b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 798a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 799b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 800b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 801a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 802a30f8f8cSSatish Balay PetscFunctionReturn(0); 803fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 804b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 805a30f8f8cSSatish Balay PetscFunctionReturn(0); 806a30f8f8cSSatish Balay } 807a30f8f8cSSatish Balay } 808a30f8f8cSSatish Balay 809a30f8f8cSSatish Balay if (isdraw) { 810b0a32e0cSBarry Smith PetscDraw draw; 811a30f8f8cSSatish Balay PetscTruth isnull; 812b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 813b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 814a30f8f8cSSatish Balay } 815a30f8f8cSSatish Balay 816a30f8f8cSSatish Balay if (size == 1) { 817e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 818a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 819a30f8f8cSSatish Balay } else { 820a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 821a30f8f8cSSatish Balay Mat A; 82265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 82365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 824b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 825a30f8f8cSSatish Balay MatScalar *a; 826a30f8f8cSSatish Balay 827*f204ca49SKris Buschelman /* Should this be the same type as mat? */ 828a30f8f8cSSatish Balay if (!rank) { 829*f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 830a30f8f8cSSatish Balay } else { 831*f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 832a30f8f8cSSatish Balay } 833*f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 834*f204ca49SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 835b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 836a30f8f8cSSatish Balay 837a30f8f8cSSatish Balay /* copy over the A part */ 83865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 839a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 84082502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 841a30f8f8cSSatish Balay 842a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 843a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 844a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 845a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 846a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 847a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 848a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 849a30f8f8cSSatish Balay col++; a += bs; 850a30f8f8cSSatish Balay } 851a30f8f8cSSatish Balay } 852a30f8f8cSSatish Balay } 853a30f8f8cSSatish Balay /* copy over the B part */ 85465d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 85565d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 856a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 857a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 858a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 859a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 860a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 861a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 862a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 863a30f8f8cSSatish Balay col++; a += bs; 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay } 866a30f8f8cSSatish Balay } 867a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 868a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 869a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 870a30f8f8cSSatish Balay /* 871a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 872b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 873a30f8f8cSSatish Balay */ 874b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 87565d70643SHong Zhang if (!rank) { 876e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 877a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 878a30f8f8cSSatish Balay } 879b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 880a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay PetscFunctionReturn(0); 883a30f8f8cSSatish Balay } 884a30f8f8cSSatish Balay 8854a2ae208SSatish Balay #undef __FUNCT__ 8864a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 887b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 888a30f8f8cSSatish Balay { 889a30f8f8cSSatish Balay int ierr; 890a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 891a30f8f8cSSatish Balay 892a30f8f8cSSatish Balay PetscFunctionBegin; 893b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 894fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 895b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 896fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 897a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 898a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 899a30f8f8cSSatish Balay } else { 90029bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 901a30f8f8cSSatish Balay } 902a30f8f8cSSatish Balay PetscFunctionReturn(0); 903a30f8f8cSSatish Balay } 904a30f8f8cSSatish Balay 9054a2ae208SSatish Balay #undef __FUNCT__ 9064a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 907a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 908a30f8f8cSSatish Balay { 909a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 910a30f8f8cSSatish Balay int ierr; 911a30f8f8cSSatish Balay 912a30f8f8cSSatish Balay PetscFunctionBegin; 913a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 914b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 915a30f8f8cSSatish Balay #endif 916a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 917a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 918a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 919a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 920a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 921a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 922a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 923a30f8f8cSSatish Balay #else 924a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 925a30f8f8cSSatish Balay #endif 926a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 927a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 928a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 92940781036SHong Zhang if (baij->slvec0) { 93040781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 93140781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 93240781036SHong Zhang } 93340781036SHong Zhang if (baij->slvec1) { 93440781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 93540781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 93640781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 93740781036SHong Zhang } 93840781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 939a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 940a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 941a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 942a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 943a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 944a30f8f8cSSatish Balay #endif 945a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 946a30f8f8cSSatish Balay PetscFunctionReturn(0); 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay 9494a2ae208SSatish Balay #undef __FUNCT__ 950a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 951a9d4b620SHong Zhang int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 952a9d4b620SHong Zhang { 953a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 9544024bf32SHong Zhang int ierr,nt,mbs=a->mbs,bs=a->bs; 955a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 956a9d4b620SHong Zhang 957a9d4b620SHong Zhang PetscFunctionBegin; 958a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 959a9d4b620SHong Zhang if (nt != A->n) { 960a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 961a9d4b620SHong Zhang } 962a9d4b620SHong Zhang ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 963a9d4b620SHong Zhang if (nt != A->m) { 964a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 965a9d4b620SHong Zhang } 966a9d4b620SHong Zhang 967a9d4b620SHong Zhang /* diagonal part */ 968a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 969a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 970a9d4b620SHong Zhang 971a9d4b620SHong Zhang /* subdiagonal part */ 972a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 973a9d4b620SHong Zhang 974a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 975b1d4fb26SBarry Smith ierr = VecGetArrayFast(a->slvec0,&from);CHKERRQ(ierr); 976b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 977a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 978b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(a->slvec0,&from);CHKERRQ(ierr); 979a9d4b620SHong Zhang 980a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 981b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 982a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 983a9d4b620SHong Zhang 984a9d4b620SHong Zhang /* supperdiagonal part */ 985a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 986a9d4b620SHong Zhang 987a9d4b620SHong Zhang PetscFunctionReturn(0); 988a9d4b620SHong Zhang } 989a9d4b620SHong Zhang 990a9d4b620SHong Zhang #undef __FUNCT__ 99140781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 99240781036SHong Zhang int MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 993a30f8f8cSSatish Balay { 994a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 995a30f8f8cSSatish Balay int ierr,nt; 996a30f8f8cSSatish Balay 997a30f8f8cSSatish Balay PetscFunctionBegin; 998a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 999b5df2d14SHong Zhang if (nt != A->n) { 100029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1001a30f8f8cSSatish Balay } 1002a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1003b5df2d14SHong Zhang if (nt != A->m) { 100429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1005a30f8f8cSSatish Balay } 100665d70643SHong Zhang 1007b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1008b941877fSHong Zhang /* do diagonal part */ 1009b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1010b941877fSHong Zhang /* do supperdiagonal part */ 1011b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1012b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1013b941877fSHong Zhang /* do subdiagonal part */ 1014b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1015b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1016b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 101765d70643SHong Zhang 1018a30f8f8cSSatish Balay PetscFunctionReturn(0); 1019a30f8f8cSSatish Balay } 1020a30f8f8cSSatish Balay 10214a2ae208SSatish Balay #undef __FUNCT__ 10224a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 1023a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1024a30f8f8cSSatish Balay { 1025de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1026a9d4b620SHong Zhang int ierr,mbs=a->mbs,bs=a->bs; 1027a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 1028a9d4b620SHong Zhang 1029a9d4b620SHong Zhang PetscFunctionBegin; 1030a9d4b620SHong Zhang /* 103156faa61eSBarry Smith PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n"); 103256faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 1033a9d4b620SHong Zhang */ 1034a9d4b620SHong Zhang /* diagonal part */ 1035a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 1036a9d4b620SHong Zhang ierr = VecSet(&zero,a->slvec1b);CHKERRQ(ierr); 1037a9d4b620SHong Zhang 1038a9d4b620SHong Zhang /* subdiagonal part */ 1039a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 1040a9d4b620SHong Zhang 1041a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 1042b1d4fb26SBarry Smith ierr = VecGetArrayFast(a->slvec0,&from);CHKERRQ(ierr); 1043b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 1044a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1045b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(a->slvec0,&from);CHKERRQ(ierr); 1046a9d4b620SHong Zhang 1047a9d4b620SHong Zhang ierr = VecScatterBegin(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1048b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 1049a9d4b620SHong Zhang ierr = VecScatterEnd(a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD,a->sMvctx);CHKERRQ(ierr); 1050a9d4b620SHong Zhang 1051a9d4b620SHong Zhang /* supperdiagonal part */ 1052a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 1053a9d4b620SHong Zhang 1054a9d4b620SHong Zhang PetscFunctionReturn(0); 1055a9d4b620SHong Zhang } 1056a9d4b620SHong Zhang 1057a9d4b620SHong Zhang #undef __FUNCT__ 1058a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 1059a9d4b620SHong Zhang int MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 1060a9d4b620SHong Zhang { 1061a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1062aa482183SHong Zhang int ierr; 1063a30f8f8cSSatish Balay 1064a30f8f8cSSatish Balay PetscFunctionBegin; 1065b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1066b941877fSHong Zhang /* do diagonal part */ 1067b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1068b941877fSHong Zhang /* do supperdiagonal part */ 1069b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1070de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 1071de8b6608SHong Zhang 1072b941877fSHong Zhang /* do subdiagonal part */ 1073a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1074a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1075a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1076aa482183SHong Zhang 1077a30f8f8cSSatish Balay PetscFunctionReturn(0); 1078a30f8f8cSSatish Balay } 1079a30f8f8cSSatish Balay 10804a2ae208SSatish Balay #undef __FUNCT__ 10814a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPISBAIJ" 1082a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 1083a30f8f8cSSatish Balay { 10845a7c0312SHong Zhang int ierr; 10855a7c0312SHong Zhang 1086a30f8f8cSSatish Balay PetscFunctionBegin; 10875a7c0312SHong Zhang ierr = MatMult(A,xx,yy);CHKERRQ(ierr); 10885a7c0312SHong Zhang PetscFunctionReturn(0); 1089a30f8f8cSSatish Balay } 1090a30f8f8cSSatish Balay 10914a2ae208SSatish Balay #undef __FUNCT__ 10924a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPISBAIJ" 1093a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1094a30f8f8cSSatish Balay { 10955a7c0312SHong Zhang int ierr; 10965a7c0312SHong Zhang 1097a30f8f8cSSatish Balay PetscFunctionBegin; 10985a7c0312SHong Zhang ierr = MatMultAdd(A,xx,yy,zz);CHKERRQ(ierr); 10995a7c0312SHong Zhang PetscFunctionReturn(0); 1100a30f8f8cSSatish Balay } 1101a30f8f8cSSatish Balay 1102a30f8f8cSSatish Balay /* 1103a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1104a30f8f8cSSatish Balay diagonal block 1105a30f8f8cSSatish Balay */ 11064a2ae208SSatish Balay #undef __FUNCT__ 11074a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 1108a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1109a30f8f8cSSatish Balay { 1110a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1111a30f8f8cSSatish Balay int ierr; 1112a30f8f8cSSatish Balay 1113a30f8f8cSSatish Balay PetscFunctionBegin; 111429bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 1115a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1116a30f8f8cSSatish Balay PetscFunctionReturn(0); 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay 11194a2ae208SSatish Balay #undef __FUNCT__ 11204a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 1121268466fbSBarry Smith int MatScale_MPISBAIJ(const PetscScalar *aa,Mat A) 1122a30f8f8cSSatish Balay { 1123a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1124a30f8f8cSSatish Balay int ierr; 1125a30f8f8cSSatish Balay 1126a30f8f8cSSatish Balay PetscFunctionBegin; 1127a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1128a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1129a30f8f8cSSatish Balay PetscFunctionReturn(0); 1130a30f8f8cSSatish Balay } 1131a30f8f8cSSatish Balay 11324a2ae208SSatish Balay #undef __FUNCT__ 11334a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 113487828ca2SBarry Smith int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1135a30f8f8cSSatish Balay { 1136a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 113787828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1138a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1139a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1140a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1141a30f8f8cSSatish Balay 1142a30f8f8cSSatish Balay PetscFunctionBegin; 114329bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1144a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1147a30f8f8cSSatish Balay /* 1148a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1149a30f8f8cSSatish Balay */ 1150a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1151a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1152a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1153a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1154a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1155a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1156a30f8f8cSSatish Balay } 115787828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1158a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1159a30f8f8cSSatish Balay } 1160a30f8f8cSSatish Balay 116129bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1162a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1163a30f8f8cSSatish Balay 1164a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1165a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1166a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1167a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1168a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1169a30f8f8cSSatish Balay nztot = nzA + nzB; 1170a30f8f8cSSatish Balay 1171a30f8f8cSSatish Balay cmap = mat->garray; 1172a30f8f8cSSatish Balay if (v || idx) { 1173a30f8f8cSSatish Balay if (nztot) { 1174a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1175a30f8f8cSSatish Balay int imark = -1; 1176a30f8f8cSSatish Balay if (v) { 1177a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1178a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1179a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1180a30f8f8cSSatish Balay else break; 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay imark = i; 1183a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1184a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1185a30f8f8cSSatish Balay } 1186a30f8f8cSSatish Balay if (idx) { 1187a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1188a30f8f8cSSatish Balay if (imark > -1) { 1189a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1190a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay } else { 1193a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1194a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1195a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1196a30f8f8cSSatish Balay else break; 1197a30f8f8cSSatish Balay } 1198a30f8f8cSSatish Balay imark = i; 1199a30f8f8cSSatish Balay } 1200a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1201a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1202a30f8f8cSSatish Balay } 1203a30f8f8cSSatish Balay } else { 1204a30f8f8cSSatish Balay if (idx) *idx = 0; 1205a30f8f8cSSatish Balay if (v) *v = 0; 1206a30f8f8cSSatish Balay } 1207a30f8f8cSSatish Balay } 1208a30f8f8cSSatish Balay *nz = nztot; 1209a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1211a30f8f8cSSatish Balay PetscFunctionReturn(0); 1212a30f8f8cSSatish Balay } 1213a30f8f8cSSatish Balay 12144a2ae208SSatish Balay #undef __FUNCT__ 12154a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 121687828ca2SBarry Smith int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1217a30f8f8cSSatish Balay { 1218a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1219a30f8f8cSSatish Balay 1220a30f8f8cSSatish Balay PetscFunctionBegin; 1221a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 122229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1223a30f8f8cSSatish Balay } 1224a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1225a30f8f8cSSatish Balay PetscFunctionReturn(0); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 12284a2ae208SSatish Balay #undef __FUNCT__ 12294a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPISBAIJ" 1230a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1233a30f8f8cSSatish Balay 1234a30f8f8cSSatish Balay PetscFunctionBegin; 1235a30f8f8cSSatish Balay *bs = baij->bs; 1236a30f8f8cSSatish Balay PetscFunctionReturn(0); 1237a30f8f8cSSatish Balay } 1238a30f8f8cSSatish Balay 12394a2ae208SSatish Balay #undef __FUNCT__ 12404a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1241a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1242a30f8f8cSSatish Balay { 1243a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1244a30f8f8cSSatish Balay int ierr; 1245a30f8f8cSSatish Balay 1246a30f8f8cSSatish Balay PetscFunctionBegin; 1247a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay PetscFunctionReturn(0); 1250a30f8f8cSSatish Balay } 1251a30f8f8cSSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1254a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1255a30f8f8cSSatish Balay { 1256a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1257a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1258a30f8f8cSSatish Balay int ierr; 1259a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1260a30f8f8cSSatish Balay 1261a30f8f8cSSatish Balay PetscFunctionBegin; 1262f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 1263a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1264a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1265a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1266a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1268a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1269a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1270a30f8f8cSSatish Balay info->nz_used = isend[0]; 1271a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1272a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1273a30f8f8cSSatish Balay info->memory = isend[3]; 1274a30f8f8cSSatish Balay info->mallocs = isend[4]; 1275a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1276d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 1277a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1278a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1279a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1280a30f8f8cSSatish Balay info->memory = irecv[3]; 1281a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1282a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1283d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 1284a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1285a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1286a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1287a30f8f8cSSatish Balay info->memory = irecv[3]; 1288a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1289a30f8f8cSSatish Balay } else { 129029bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1291a30f8f8cSSatish Balay } 1292f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1293f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1294f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1295f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 1296a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1297a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1298a30f8f8cSSatish Balay info->factor_mallocs = 0; 1299a30f8f8cSSatish Balay PetscFunctionReturn(0); 1300a30f8f8cSSatish Balay } 1301a30f8f8cSSatish Balay 13024a2ae208SSatish Balay #undef __FUNCT__ 13034a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1304a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1305a30f8f8cSSatish Balay { 1306a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1307a30f8f8cSSatish Balay int ierr; 1308a30f8f8cSSatish Balay 1309a30f8f8cSSatish Balay PetscFunctionBegin; 1310e98b92d7SKris Buschelman switch (op) { 1311e98b92d7SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1312e98b92d7SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1313e98b92d7SKris Buschelman case MAT_COLUMNS_UNSORTED: 1314e98b92d7SKris Buschelman case MAT_COLUMNS_SORTED: 1315e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1316e98b92d7SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1317e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1318a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1320e98b92d7SKris Buschelman break; 1321e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 1322a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1323a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1324a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1325e98b92d7SKris Buschelman break; 1326e98b92d7SKris Buschelman case MAT_ROWS_SORTED: 1327e98b92d7SKris Buschelman case MAT_ROWS_UNSORTED: 1328e98b92d7SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1329b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1330e98b92d7SKris Buschelman break; 1331e98b92d7SKris Buschelman case MAT_COLUMN_ORIENTED: 1332a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1333a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1334a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1335e98b92d7SKris Buschelman break; 1336e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1337a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1338e98b92d7SKris Buschelman break; 1339e98b92d7SKris Buschelman case MAT_NO_NEW_DIAGONALS: 134029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1341e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 1342a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1343e98b92d7SKris Buschelman break; 13449a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 13459a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 13469a4540c5SBarry Smith case MAT_HERMITIAN: 13479a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 134877e54ba9SKris Buschelman case MAT_SYMMETRIC: 134977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13509a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 13519a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 13529a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 135377e54ba9SKris Buschelman break; 1354e98b92d7SKris Buschelman default: 135529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1356a30f8f8cSSatish Balay } 1357a30f8f8cSSatish Balay PetscFunctionReturn(0); 1358a30f8f8cSSatish Balay } 1359a30f8f8cSSatish Balay 13604a2ae208SSatish Balay #undef __FUNCT__ 13618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 13628115998fSBarry Smith int MatTranspose_MPISBAIJ(Mat A,Mat *B) 1363a30f8f8cSSatish Balay { 13648115998fSBarry Smith int ierr; 1365a30f8f8cSSatish Balay PetscFunctionBegin; 1366999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 13678115998fSBarry Smith PetscFunctionReturn(0); 1368a30f8f8cSSatish Balay } 1369a30f8f8cSSatish Balay 13704a2ae208SSatish Balay #undef __FUNCT__ 13714a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1372a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1373a30f8f8cSSatish Balay { 1374a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1375a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1376a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1377a30f8f8cSSatish Balay 1378a30f8f8cSSatish Balay PetscFunctionBegin; 1379a30f8f8cSSatish Balay if (ll != rr) { 138029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1381a30f8f8cSSatish Balay } 1382a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1383a30f8f8cSSatish Balay if (rr) { 1384a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 138529bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1386a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1387a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1388a30f8f8cSSatish Balay /*} if (ll) { */ 1389a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 139029bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1391a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay /* } */ 1393a30f8f8cSSatish Balay /* scale the diagonal block */ 1394a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay 1396a30f8f8cSSatish Balay /* if (rr) { */ 1397a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1398a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1399a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1400a30f8f8cSSatish Balay } 1401a30f8f8cSSatish Balay 1402a30f8f8cSSatish Balay PetscFunctionReturn(0); 1403a30f8f8cSSatish Balay } 1404a30f8f8cSSatish Balay 14054a2ae208SSatish Balay #undef __FUNCT__ 14064a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPISBAIJ" 1407268466fbSBarry Smith int MatZeroRows_MPISBAIJ(Mat A,IS is,const PetscScalar *diag) 1408a30f8f8cSSatish Balay { 1409a30f8f8cSSatish Balay PetscFunctionBegin; 1410c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPISBAIJ" 1415a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1416a30f8f8cSSatish Balay { 1417a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1418a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1419a30f8f8cSSatish Balay static int called = 0; 1420a30f8f8cSSatish Balay int ierr; 1421a30f8f8cSSatish Balay 1422a30f8f8cSSatish Balay PetscFunctionBegin; 1423a30f8f8cSSatish Balay if (!a->rank) { 1424a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1425a30f8f8cSSatish Balay } 1426a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1427a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1428a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1429a30f8f8cSSatish Balay PetscFunctionReturn(0); 1430a30f8f8cSSatish Balay } 1431a30f8f8cSSatish Balay 14324a2ae208SSatish Balay #undef __FUNCT__ 14334a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1434a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1435a30f8f8cSSatish Balay { 1436f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1437a30f8f8cSSatish Balay int ierr; 1438a30f8f8cSSatish Balay 1439a30f8f8cSSatish Balay PetscFunctionBegin; 1440a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1441a30f8f8cSSatish Balay PetscFunctionReturn(0); 1442a30f8f8cSSatish Balay } 1443a30f8f8cSSatish Balay 1444a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1445a30f8f8cSSatish Balay 14464a2ae208SSatish Balay #undef __FUNCT__ 14474a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1448a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1449a30f8f8cSSatish Balay { 1450a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1451a30f8f8cSSatish Balay Mat a,b,c,d; 1452a30f8f8cSSatish Balay PetscTruth flg; 1453a30f8f8cSSatish Balay int ierr; 1454a30f8f8cSSatish Balay 1455a30f8f8cSSatish Balay PetscFunctionBegin; 1456a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1457a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1458a30f8f8cSSatish Balay 1459a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1460a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1461a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1462a30f8f8cSSatish Balay } 1463a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1464a30f8f8cSSatish Balay PetscFunctionReturn(0); 1465a30f8f8cSSatish Balay } 1466a30f8f8cSSatish Balay 14674a2ae208SSatish Balay #undef __FUNCT__ 14684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1469273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1470273d9f13SBarry Smith { 1471273d9f13SBarry Smith int ierr; 1472273d9f13SBarry Smith 1473273d9f13SBarry Smith PetscFunctionBegin; 1474273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1475273d9f13SBarry Smith PetscFunctionReturn(0); 1476273d9f13SBarry Smith } 1477a5e6ed63SBarry Smith 1478a5e6ed63SBarry Smith #undef __FUNCT__ 1479a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 1480a5e6ed63SBarry Smith int MatGetSubMatrices_MPISBAIJ(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1481a5e6ed63SBarry Smith { 1482a5e6ed63SBarry Smith int i,ierr; 1483a5e6ed63SBarry Smith PetscTruth flg; 1484a5e6ed63SBarry Smith 1485a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1486a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1487a5e6ed63SBarry Smith if (!flg) { 1488a5e6ed63SBarry Smith SETERRQ(1,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1489a5e6ed63SBarry Smith } 1490a5e6ed63SBarry Smith } 1491a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1492a5e6ed63SBarry Smith PetscFunctionReturn(0); 1493a5e6ed63SBarry Smith } 1494a5e6ed63SBarry Smith 1495a5e6ed63SBarry Smith 1496a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1497a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1498a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1499a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1500a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1501a9d4b620SHong Zhang MatMult_MPISBAIJ, 150297304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1503a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1504a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 150897304618SKris Buschelman /*10*/ 0, 1509a30f8f8cSSatish Balay 0, 1510a30f8f8cSSatish Balay 0, 15112798e883SHong Zhang MatRelax_MPISBAIJ, 1512a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 151397304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1514a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1515a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1516a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1517a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 151897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1519a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1520a30f8f8cSSatish Balay 0, 1521a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1522a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 152397304618SKris Buschelman /*25*/ MatZeroRows_MPISBAIJ, 1524a30f8f8cSSatish Balay 0, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 152897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ, 1529b5df2d14SHong Zhang 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay 0, 1532a30f8f8cSSatish Balay 0, 153397304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay 0, 153897304618SKris Buschelman /*40*/ 0, 1539a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1540d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1541a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1542a30f8f8cSSatish Balay 0, 154397304618SKris Buschelman /*45*/ MatPrintHelp_MPISBAIJ, 1544a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay 0, 1547a30f8f8cSSatish Balay 0, 154897304618SKris Buschelman /*50*/ MatGetBlockSize_MPISBAIJ, 1549a30f8f8cSSatish Balay 0, 1550a30f8f8cSSatish Balay 0, 1551a30f8f8cSSatish Balay 0, 1552a30f8f8cSSatish Balay 0, 155397304618SKris Buschelman /*55*/ 0, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1556a30f8f8cSSatish Balay 0, 1557a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 155897304618SKris Buschelman /*60*/ 0, 1559a30f8f8cSSatish Balay 0, 1560a30f8f8cSSatish Balay 0, 15618a124369SBarry Smith MatGetPetscMaps_Petsc, 156224d5174aSHong Zhang 0, 156397304618SKris Buschelman /*65*/ 0, 156424d5174aSHong Zhang 0, 156524d5174aSHong Zhang 0, 156624d5174aSHong Zhang 0, 156724d5174aSHong Zhang 0, 156897304618SKris Buschelman /*70*/ MatGetRowMax_MPISBAIJ, 156924d5174aSHong Zhang 0, 157097304618SKris Buschelman 0, 157197304618SKris Buschelman 0, 157297304618SKris Buschelman 0, 157397304618SKris Buschelman /*75*/ 0, 157497304618SKris Buschelman 0, 157597304618SKris Buschelman 0, 157697304618SKris Buschelman 0, 157797304618SKris Buschelman 0, 157897304618SKris Buschelman /*80*/ 0, 157997304618SKris Buschelman 0, 158097304618SKris Buschelman 0, 158197304618SKris Buschelman 0, 158297304618SKris Buschelman /*85*/ MatLoad_MPISBAIJ 158397304618SKris Buschelman }; 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay 1586a30f8f8cSSatish Balay EXTERN_C_BEGIN 15874a2ae208SSatish Balay #undef __FUNCT__ 15884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1589a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1590a30f8f8cSSatish Balay { 1591a30f8f8cSSatish Balay PetscFunctionBegin; 1592a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1593a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1594a30f8f8cSSatish Balay PetscFunctionReturn(0); 1595a30f8f8cSSatish Balay } 1596a30f8f8cSSatish Balay EXTERN_C_END 1597a30f8f8cSSatish Balay 1598273d9f13SBarry Smith EXTERN_C_BEGIN 15994a2ae208SSatish Balay #undef __FUNCT__ 1600a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1601a23d5eceSKris Buschelman int MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1602a23d5eceSKris Buschelman { 1603a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1604a23d5eceSKris Buschelman int ierr,i,mbs,Mbs; 1605a23d5eceSKris Buschelman 1606a23d5eceSKris Buschelman PetscFunctionBegin; 1607a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1608a23d5eceSKris Buschelman 1609a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1610a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1611a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 1612a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1613a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1614a23d5eceSKris Buschelman if (d_nnz) { 1615a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1616a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman } 1619a23d5eceSKris Buschelman if (o_nnz) { 1620a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1621a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1622a23d5eceSKris Buschelman } 1623a23d5eceSKris Buschelman } 1624a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1625a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 1626a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 1627a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1628a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1629a23d5eceSKris Buschelman 1630a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1631a23d5eceSKris Buschelman mbs = B->m/bs; 1632a23d5eceSKris Buschelman Mbs = B->M/bs; 1633a23d5eceSKris Buschelman if (mbs*bs != B->m) { 1634a23d5eceSKris Buschelman SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1635a23d5eceSKris Buschelman } 1636a23d5eceSKris Buschelman 1637a23d5eceSKris Buschelman b->bs = bs; 1638a23d5eceSKris Buschelman b->bs2 = bs*bs; 1639a23d5eceSKris Buschelman b->mbs = mbs; 1640a23d5eceSKris Buschelman b->nbs = mbs; 1641a23d5eceSKris Buschelman b->Mbs = Mbs; 1642a23d5eceSKris Buschelman b->Nbs = Mbs; 1643a23d5eceSKris Buschelman 1644a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1645a23d5eceSKris Buschelman b->rowners[0] = 0; 1646a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 1647a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 1648a23d5eceSKris Buschelman } 1649a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 1650a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 1651a23d5eceSKris Buschelman b->cstart = b->rstart; 1652a23d5eceSKris Buschelman b->cend = b->rend; 1653a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1654a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 1655a23d5eceSKris Buschelman } 1656a23d5eceSKris Buschelman b->rstart_bs = b-> rstart*bs; 1657a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 1658a23d5eceSKris Buschelman 1659a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 1660a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 1661a23d5eceSKris Buschelman 16629c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->m,B->m,B->m,&b->A);CHKERRQ(ierr); 16639c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 1664c60e587dSKris Buschelman ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 16659c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 16669c097c71SKris Buschelman 16679c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->M,B->m,B->M,&b->B);CHKERRQ(ierr); 16684aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 1669589264c8SKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 16709c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 1671a23d5eceSKris Buschelman 1672a23d5eceSKris Buschelman /* build cache for off array entries formed */ 1673a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1674a23d5eceSKris Buschelman 1675a23d5eceSKris Buschelman PetscFunctionReturn(0); 1676a23d5eceSKris Buschelman } 1677a23d5eceSKris Buschelman EXTERN_C_END 1678a23d5eceSKris Buschelman 16790bad9183SKris Buschelman /*MC 1680fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16810bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16820bad9183SKris Buschelman 16830bad9183SKris Buschelman Options Database Keys: 16840bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16850bad9183SKris Buschelman 16860bad9183SKris Buschelman Level: beginner 16870bad9183SKris Buschelman 16880bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16890bad9183SKris Buschelman M*/ 16900bad9183SKris Buschelman 1691a23d5eceSKris Buschelman EXTERN_C_BEGIN 1692a23d5eceSKris Buschelman #undef __FUNCT__ 16934a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1694b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1695b5df2d14SHong Zhang { 1696b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1697ca54ac64SHong Zhang int ierr; 1698b5df2d14SHong Zhang PetscTruth flg; 1699b5df2d14SHong Zhang 1700b5df2d14SHong Zhang PetscFunctionBegin; 1701b5df2d14SHong Zhang 1702b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1703b0a32e0cSBarry Smith B->data = (void*)b; 1704b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1705b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1706b5df2d14SHong Zhang 1707b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1708b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1709b5df2d14SHong Zhang B->mapping = 0; 1710b5df2d14SHong Zhang B->factor = 0; 1711b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1712b5df2d14SHong Zhang 1713b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1714b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1715b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1716b5df2d14SHong Zhang 1717b5df2d14SHong Zhang /* build local table of row and column ownerships */ 171882502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1719273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1720273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1721b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1722b5df2d14SHong Zhang 1723b5df2d14SHong Zhang /* build cache for off array entries formed */ 1724b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1725b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1726b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1727b5df2d14SHong Zhang b->garray = PETSC_NULL; 1728b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1729b5df2d14SHong Zhang 1730f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1731b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 173264a35ccbSBarry Smith b->setvalueslen = 0; 1733b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1734b5df2d14SHong Zhang #endif 1735b5df2d14SHong Zhang 1736b5df2d14SHong Zhang /* stuff used in block assembly */ 1737b5df2d14SHong Zhang b->barray = 0; 1738b5df2d14SHong Zhang 1739b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1740b5df2d14SHong Zhang b->lvec = 0; 1741b5df2d14SHong Zhang b->Mvctx = 0; 174240781036SHong Zhang b->slvec0 = 0; 174340781036SHong Zhang b->slvec0b = 0; 174440781036SHong Zhang b->slvec1 = 0; 174540781036SHong Zhang b->slvec1a = 0; 174640781036SHong Zhang b->slvec1b = 0; 174740781036SHong Zhang b->sMvctx = 0; 1748b5df2d14SHong Zhang 1749b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1750b5df2d14SHong Zhang b->rowindices = 0; 1751b5df2d14SHong Zhang b->rowvalues = 0; 1752b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1753b5df2d14SHong Zhang 1754b5df2d14SHong Zhang /* hash table stuff */ 1755b5df2d14SHong Zhang b->ht = 0; 1756b5df2d14SHong Zhang b->hd = 0; 1757b5df2d14SHong Zhang b->ht_size = 0; 1758b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1759b5df2d14SHong Zhang b->ht_fact = 0; 1760b5df2d14SHong Zhang b->ht_total_ct = 0; 1761b5df2d14SHong Zhang b->ht_insert_ct = 0; 1762b5df2d14SHong Zhang 1763e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1764b5df2d14SHong Zhang if (flg) { 1765f6275e2eSBarry Smith PetscReal fact = 1.39; 1766b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1767e82a3eeeSBarry Smith ierr = PetscOptionsGetReal(B->prefix,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1768b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1769b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1770b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1771b5df2d14SHong Zhang } 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1773b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1774b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1775b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1776b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1777b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1778b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1779b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1780b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1781a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1782a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1783a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1784b5df2d14SHong Zhang PetscFunctionReturn(0); 1785b5df2d14SHong Zhang } 1786273d9f13SBarry Smith EXTERN_C_END 1787b5df2d14SHong Zhang 1788209238afSKris Buschelman /*MC 1789002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1790209238afSKris Buschelman 1791209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1792209238afSKris Buschelman and MATMPISBAIJ otherwise. 1793209238afSKris Buschelman 1794209238afSKris Buschelman Options Database Keys: 1795209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1796209238afSKris Buschelman 1797209238afSKris Buschelman Level: beginner 1798209238afSKris Buschelman 1799209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1800209238afSKris Buschelman M*/ 1801209238afSKris Buschelman 1802209238afSKris Buschelman EXTERN_C_BEGIN 1803209238afSKris Buschelman #undef __FUNCT__ 1804209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1805209238afSKris Buschelman int MatCreate_SBAIJ(Mat A) { 1806209238afSKris Buschelman int ierr,size; 1807209238afSKris Buschelman 1808209238afSKris Buschelman PetscFunctionBegin; 1809209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATSBAIJ);CHKERRQ(ierr); 1810209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1811209238afSKris Buschelman if (size == 1) { 1812209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1813209238afSKris Buschelman } else { 1814209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1815209238afSKris Buschelman } 1816209238afSKris Buschelman PetscFunctionReturn(0); 1817209238afSKris Buschelman } 1818209238afSKris Buschelman EXTERN_C_END 1819209238afSKris Buschelman 18204a2ae208SSatish Balay #undef __FUNCT__ 18214a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1822b5df2d14SHong Zhang /*@C 1823b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1824b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1825b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1826b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1827b5df2d14SHong Zhang 1828b5df2d14SHong Zhang Collective on Mat 1829b5df2d14SHong Zhang 1830b5df2d14SHong Zhang Input Parameters: 1831b5df2d14SHong Zhang + A - the matrix 1832b5df2d14SHong Zhang . bs - size of blockk 1833b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1834b5df2d14SHong Zhang submatrix (same for all local rows) 1835b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18366d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18376d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18386d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1839b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1840b5df2d14SHong Zhang submatrix (same for all local rows). 1841b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1842b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1843b5df2d14SHong Zhang each block row) or PETSC_NULL. 1844b5df2d14SHong Zhang 1845b5df2d14SHong Zhang 1846b5df2d14SHong Zhang Options Database Keys: 1847b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1848b5df2d14SHong Zhang block calculations (much slower) 1849b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1850b5df2d14SHong Zhang 1851b5df2d14SHong Zhang Notes: 1852b5df2d14SHong Zhang 1853b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1854b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang Storage Information: 1857b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1858b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1859b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1860b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1861b5df2d14SHong Zhang 1862b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1863b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1864b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1865b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1866b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1867b5df2d14SHong Zhang 1868b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1869b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1870b5df2d14SHong Zhang 1871b5df2d14SHong Zhang .vb 1872b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1873b5df2d14SHong Zhang ------------------- 1874b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1875b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1876b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1877b5df2d14SHong Zhang ------------------- 1878b5df2d14SHong Zhang .ve 1879b5df2d14SHong Zhang 1880b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1881b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18826d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18836d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1884b5df2d14SHong Zhang 18856d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18866d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1887b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1888b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1889b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1890b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1891b5df2d14SHong Zhang matrices. 1892b5df2d14SHong Zhang 1893b5df2d14SHong Zhang Level: intermediate 1894b5df2d14SHong Zhang 1895b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1896b5df2d14SHong Zhang 1897b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1898b5df2d14SHong Zhang @*/ 1899ca01db9bSBarry Smith int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 1900b5df2d14SHong Zhang { 1901ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 1902b5df2d14SHong Zhang 1903b5df2d14SHong Zhang PetscFunctionBegin; 1904a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1905a23d5eceSKris Buschelman if (f) { 1906a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1907b5df2d14SHong Zhang } 1908b5df2d14SHong Zhang PetscFunctionReturn(0); 1909b5df2d14SHong Zhang } 1910b5df2d14SHong Zhang 19114a2ae208SSatish Balay #undef __FUNCT__ 19124a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1913a30f8f8cSSatish Balay /*@C 1914a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1915a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1916a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1917a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1918a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1919a30f8f8cSSatish Balay 1920a30f8f8cSSatish Balay Collective on MPI_Comm 1921a30f8f8cSSatish Balay 1922a30f8f8cSSatish Balay Input Parameters: 1923a30f8f8cSSatish Balay + comm - MPI communicator 1924a30f8f8cSSatish Balay . bs - size of blockk 1925a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1926a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1927a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1928a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1929a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1930a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1931a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1932a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1933a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1934a30f8f8cSSatish Balay submatrix (same for all local rows) 1935a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19366d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19376d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19386d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1939a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1940a30f8f8cSSatish Balay submatrix (same for all local rows). 1941a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1942a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1943a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1944a30f8f8cSSatish Balay 1945a30f8f8cSSatish Balay Output Parameter: 1946a30f8f8cSSatish Balay . A - the matrix 1947a30f8f8cSSatish Balay 1948a30f8f8cSSatish Balay Options Database Keys: 1949a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1950a30f8f8cSSatish Balay block calculations (much slower) 1951a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1952a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1953a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay Notes: 1956a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1957a30f8f8cSSatish Balay (possibly both). 1958a30f8f8cSSatish Balay 1959a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1960a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1961a30f8f8cSSatish Balay 1962a30f8f8cSSatish Balay Storage Information: 1963a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1964a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1965a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1966a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1969a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1970a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1971a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1972a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1973a30f8f8cSSatish Balay 1974a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1975a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1976a30f8f8cSSatish Balay 1977a30f8f8cSSatish Balay .vb 1978a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1979a30f8f8cSSatish Balay ------------------- 1980a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1981a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1982a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1983a30f8f8cSSatish Balay ------------------- 1984a30f8f8cSSatish Balay .ve 1985a30f8f8cSSatish Balay 1986a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1987a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 19886d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19896d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1990a30f8f8cSSatish Balay 19916d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19926d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1993a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1994a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1995a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1996a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1997a30f8f8cSSatish Balay matrices. 1998a30f8f8cSSatish Balay 1999a30f8f8cSSatish Balay Level: intermediate 2000a30f8f8cSSatish Balay 2001a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2002a30f8f8cSSatish Balay 2003a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2004a30f8f8cSSatish Balay @*/ 2005a30f8f8cSSatish Balay 2006ca01db9bSBarry Smith int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 2007a30f8f8cSSatish Balay { 2008273d9f13SBarry Smith int ierr,size; 2009a30f8f8cSSatish Balay 2010a30f8f8cSSatish Balay PetscFunctionBegin; 2011b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2012273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2013273d9f13SBarry Smith if (size > 1) { 2014b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2015b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2016273d9f13SBarry Smith } else { 2017273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2018273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2019273d9f13SBarry Smith } 2020a30f8f8cSSatish Balay PetscFunctionReturn(0); 2021a30f8f8cSSatish Balay } 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay 20244a2ae208SSatish Balay #undef __FUNCT__ 20254a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 2026a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2027a30f8f8cSSatish Balay { 2028a30f8f8cSSatish Balay Mat mat; 2029a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2030387bc808SHong Zhang int ierr,len=0,nt,bs=oldmat->bs,mbs=oldmat->mbs; 2031387bc808SHong Zhang PetscScalar *array; 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay PetscFunctionBegin; 2034a30f8f8cSSatish Balay *newmat = 0; 2035b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2036be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 20377fff6886SHong Zhang 20387fff6886SHong Zhang /* ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); */ /*-- cause error? */ 203982327fa8SHong Zhang mat->factor = matin->factor; 2040273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 204182327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20427fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20437fff6886SHong Zhang 2044b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2045a30f8f8cSSatish Balay a->bs = oldmat->bs; 2046a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2047a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2048a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2049a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2050a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2051a30f8f8cSSatish Balay 2052a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 2053a30f8f8cSSatish Balay a->rend = oldmat->rend; 2054a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 2055a30f8f8cSSatish Balay a->cend = oldmat->cend; 2056a30f8f8cSSatish Balay a->size = oldmat->size; 2057a30f8f8cSSatish Balay a->rank = oldmat->rank; 2058a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2059a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2060a30f8f8cSSatish Balay a->rowindices = 0; 2061a30f8f8cSSatish Balay a->rowvalues = 0; 2062a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2063a30f8f8cSSatish Balay a->barray = 0; 2064a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 2065a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 2066a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 2067a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 2068a30f8f8cSSatish Balay 2069a30f8f8cSSatish Balay /* hash table stuff */ 2070a30f8f8cSSatish Balay a->ht = 0; 2071a30f8f8cSSatish Balay a->hd = 0; 2072a30f8f8cSSatish Balay a->ht_size = 0; 2073a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2074a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2075a30f8f8cSSatish Balay a->ht_total_ct = 0; 2076a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2077a30f8f8cSSatish Balay 2078a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 2079a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2080a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 2081a30f8f8cSSatish Balay if (oldmat->colmap) { 2082a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2083a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2084a30f8f8cSSatish Balay #else 208582502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2086b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2087a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 2088a30f8f8cSSatish Balay #endif 2089a30f8f8cSSatish Balay } else a->colmap = 0; 2090387bc808SHong Zhang 2091a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 209282502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2093b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2094a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 2095a30f8f8cSSatish Balay } else a->garray = 0; 2096a30f8f8cSSatish Balay 2097a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2098b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 2099a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2100b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 210182327fa8SHong Zhang 210282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 2103387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 210482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 2105387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2106387bc808SHong Zhang 2107387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 2108387bc808SHong Zhang ierr = VecGetArrayFast(a->slvec1,&array);CHKERRQ(ierr); 2109387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2110387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 2111387bc808SHong Zhang ierr = VecRestoreArrayFast(a->slvec1,&array);CHKERRQ(ierr); 2112387bc808SHong Zhang ierr = VecGetArrayFast(a->slvec0,&array);CHKERRQ(ierr); 2113387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 2114387bc808SHong Zhang ierr = VecRestoreArrayFast(a->slvec0,&array);CHKERRQ(ierr); 2115387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0); 2116387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1); 2117387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec0b); 2118387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1a); 2119387bc808SHong Zhang PetscLogObjectParent(mat,a->slvec1b); 2120387bc808SHong Zhang 2121387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2122387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2123387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 2124387bc808SHong Zhang PetscLogObjectParent(mat,a->sMvctx); 212582327fa8SHong Zhang 2126a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2127b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 2128a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2129b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2130b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay *newmat = mat; 2132a30f8f8cSSatish Balay PetscFunctionReturn(0); 2133a30f8f8cSSatish Balay } 2134a30f8f8cSSatish Balay 2135a30f8f8cSSatish Balay #include "petscsys.h" 2136a30f8f8cSSatish Balay 21374a2ae208SSatish Balay #undef __FUNCT__ 21384a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 21398e9aea5cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 2140a30f8f8cSSatish Balay { 2141a30f8f8cSSatish Balay Mat A; 2142a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 214387828ca2SBarry Smith PetscScalar *vals,*buf; 2144a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2145a30f8f8cSSatish Balay MPI_Status status; 2146a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 2147a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2148a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2149a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2150a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2151a30f8f8cSSatish Balay 2152a30f8f8cSSatish Balay PetscFunctionBegin; 2153b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay 2155a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay if (!rank) { 2158b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2159a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2160552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2161a30f8f8cSSatish Balay if (header[3] < 0) { 216229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2163a30f8f8cSSatish Balay } 2164a30f8f8cSSatish Balay } 2165a30f8f8cSSatish Balay 2166a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2168a30f8f8cSSatish Balay 216929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2170a30f8f8cSSatish Balay 2171a30f8f8cSSatish Balay /* 2172a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2173a30f8f8cSSatish Balay divisible by the blocksize 2174a30f8f8cSSatish Balay */ 2175a30f8f8cSSatish Balay Mbs = M/bs; 2176a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2177a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2178a30f8f8cSSatish Balay else Mbs++; 2179a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2180b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2181a30f8f8cSSatish Balay } 2182a30f8f8cSSatish Balay 2183a30f8f8cSSatish Balay /* determine ownership of all rows */ 2184a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2185a30f8f8cSSatish Balay m = mbs*bs; 2186b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2187a30f8f8cSSatish Balay browners = rowners + size + 1; 2188a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2189a30f8f8cSSatish Balay rowners[0] = 0; 2190a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2191a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2192a30f8f8cSSatish Balay rstart = rowners[rank]; 2193a30f8f8cSSatish Balay rend = rowners[rank+1]; 2194a30f8f8cSSatish Balay 2195a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 219682502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay if (!rank) { 2198b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 220182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2203a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2205a30f8f8cSSatish Balay } else { 2206a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2207a30f8f8cSSatish Balay } 2208a30f8f8cSSatish Balay 22090222edb1SHong Zhang if (!rank) { /* procs[0] */ 2210a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 221182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2213a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2214a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2215a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2216a30f8f8cSSatish Balay } 2217a30f8f8cSSatish Balay } 2218a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2219a30f8f8cSSatish Balay 2220a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2221a30f8f8cSSatish Balay maxnz = 0; 2222a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2223a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2224a30f8f8cSSatish Balay } 222582502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2226a30f8f8cSSatish Balay 2227a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2228a30f8f8cSSatish Balay nz = procsnz[0]; 222982502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay mycols = ibuf; 2231a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2232a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2233a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2234a30f8f8cSSatish Balay 2235a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2236a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2237a30f8f8cSSatish Balay nz = procsnz[i]; 2238a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2239a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2240a30f8f8cSSatish Balay } 2241a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2242a30f8f8cSSatish Balay if (size != 1) { 2243a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2244a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2245a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2246a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2247a30f8f8cSSatish Balay } 2248a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22490222edb1SHong Zhang } else { /* procs[i], i>0 */ 2250a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2251a30f8f8cSSatish Balay nz = 0; 2252a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2253a30f8f8cSSatish Balay nz += locrowlens[i]; 2254a30f8f8cSSatish Balay } 225582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2256a30f8f8cSSatish Balay mycols = ibuf; 2257a30f8f8cSSatish Balay /* receive message of column indices*/ 2258a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2259a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 226029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2261a30f8f8cSSatish Balay } 2262a30f8f8cSSatish Balay 2263a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 226482502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 226682502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2267a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2268a30f8f8cSSatish Balay masked1 = mask + Mbs; 2269a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2270a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2271a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2272a30f8f8cSSatish Balay dcount = 0; 2273a30f8f8cSSatish Balay odcount = 0; 2274a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2275a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2276a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 22770222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2278a30f8f8cSSatish Balay if (!mask[tmp]) { 2279a30f8f8cSSatish Balay mask[tmp] = 1; 22800222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 22810222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2282a30f8f8cSSatish Balay } 2283a30f8f8cSSatish Balay } 2284a30f8f8cSSatish Balay rowcount++; 2285a30f8f8cSSatish Balay } 2286a30f8f8cSSatish Balay 22870222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 22880222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2289a30f8f8cSSatish Balay 2290a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2291a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2292a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2293a30f8f8cSSatish Balay } 2294a30f8f8cSSatish Balay 2295a30f8f8cSSatish Balay /* create our matrix */ 229622191285SKris Buschelman ierr = MatCreate(comm,m,m,PETSC_DETERMINE,PETSC_DETERMINE,&A);CHKERRQ(ierr); 229722191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 229822191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2299273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2300a30f8f8cSSatish Balay 2301a30f8f8cSSatish Balay if (!rank) { 230287828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2303a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2304a30f8f8cSSatish Balay nz = procsnz[0]; 2305a30f8f8cSSatish Balay vals = buf; 2306a30f8f8cSSatish Balay mycols = ibuf; 2307a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2308a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2309a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2310a30f8f8cSSatish Balay 2311a30f8f8cSSatish Balay /* insert into matrix */ 2312a30f8f8cSSatish Balay jj = rstart*bs; 2313a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23147e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2315a30f8f8cSSatish Balay mycols += locrowlens[i]; 2316a30f8f8cSSatish Balay vals += locrowlens[i]; 2317a30f8f8cSSatish Balay jj++; 2318a30f8f8cSSatish Balay } 23197e06b45fSHong Zhang 2320a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2321a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2322a30f8f8cSSatish Balay nz = procsnz[i]; 2323a30f8f8cSSatish Balay vals = buf; 2324a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2325a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay } 2327a30f8f8cSSatish Balay /* the last proc */ 2328a30f8f8cSSatish Balay if (size != 1){ 2329a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2330a30f8f8cSSatish Balay vals = buf; 2331a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2332a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2333a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2334a30f8f8cSSatish Balay } 2335a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23367e06b45fSHong Zhang 2337a30f8f8cSSatish Balay } else { 2338a30f8f8cSSatish Balay /* receive numeric values */ 233987828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2340a30f8f8cSSatish Balay 2341a30f8f8cSSatish Balay /* receive message of values*/ 2342a30f8f8cSSatish Balay vals = buf; 2343a30f8f8cSSatish Balay mycols = ibuf; 2344a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2345a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 234629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2347a30f8f8cSSatish Balay 2348a30f8f8cSSatish Balay /* insert into matrix */ 2349a30f8f8cSSatish Balay jj = rstart*bs; 2350a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2351a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay mycols += locrowlens[i]; 2353a30f8f8cSSatish Balay vals += locrowlens[i]; 2354a30f8f8cSSatish Balay jj++; 2355a30f8f8cSSatish Balay } 2356a30f8f8cSSatish Balay } 23577e06b45fSHong Zhang 2358a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2359a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2360a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2361a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2362a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2363a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2364a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2365a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 236622191285SKris Buschelman *newmat = A; 2367a30f8f8cSSatish Balay PetscFunctionReturn(0); 2368a30f8f8cSSatish Balay } 2369a30f8f8cSSatish Balay 23704a2ae208SSatish Balay #undef __FUNCT__ 23714a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2372a30f8f8cSSatish Balay /*@ 2373a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay Input Parameters: 2376a30f8f8cSSatish Balay . mat - the matrix 2377a30f8f8cSSatish Balay . fact - factor 2378a30f8f8cSSatish Balay 2379a30f8f8cSSatish Balay Collective on Mat 2380a30f8f8cSSatish Balay 2381a30f8f8cSSatish Balay Level: advanced 2382a30f8f8cSSatish Balay 2383a30f8f8cSSatish Balay Notes: 2384a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2385a30f8f8cSSatish Balay 2386a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2387a30f8f8cSSatish Balay 2388a30f8f8cSSatish Balay .seealso: MatSetOption() 2389a30f8f8cSSatish Balay @*/ 2390a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2391a30f8f8cSSatish Balay { 2392a30f8f8cSSatish Balay PetscFunctionBegin; 239329bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 239496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2395a30f8f8cSSatish Balay } 239624d5174aSHong Zhang 23974a2ae208SSatish Balay #undef __FUNCT__ 23984a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPISBAIJ" 239924d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 240024d5174aSHong Zhang { 240124d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2402f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2403ca54ac64SHong Zhang PetscReal atmp; 240487828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2405ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2406154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 240787828ca2SBarry Smith PetscScalar *va; 24088a1c53f2SBarry Smith MatScalar *ba; 2409f4c0e9e4SHong Zhang MPI_Status stat; 241024d5174aSHong Zhang 241124d5174aSHong Zhang PetscFunctionBegin; 2412d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2413b1d4fb26SBarry Smith ierr = VecGetArrayFast(v,&va);CHKERRQ(ierr); 2414f4c0e9e4SHong Zhang 241556faa61eSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 241656faa61eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2417f4c0e9e4SHong Zhang 2418f4c0e9e4SHong Zhang bs = a->bs; 2419f4c0e9e4SHong Zhang mbs = a->mbs; 2420f4c0e9e4SHong Zhang Mbs = a->Mbs; 2421f4c0e9e4SHong Zhang ba = b->a; 2422f4c0e9e4SHong Zhang bi = b->i; 2423f4c0e9e4SHong Zhang bj = b->j; 2424ca54ac64SHong Zhang /* 242556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 242656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2427ca54ac64SHong Zhang */ 2428f4c0e9e4SHong Zhang 2429f4c0e9e4SHong Zhang /* find ownerships */ 2430f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2431f4c0e9e4SHong Zhang /* 243204d41228SHong Zhang if (!rank){ 243304d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2434f4c0e9e4SHong Zhang } 2435f4c0e9e4SHong Zhang */ 2436f4c0e9e4SHong Zhang 2437f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 243882502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2439ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2440f4c0e9e4SHong Zhang 2441f4c0e9e4SHong Zhang /* row_max for B */ 2442b8475685SHong Zhang if (rank != size-1){ 2443f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2444f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2445f4c0e9e4SHong Zhang brow = bs*i; 2446f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2447f4c0e9e4SHong Zhang bcol = bs*(*bj); 2448f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2449ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 245004d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2451ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2452f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2453f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2454ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2455f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2456ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2457f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2458f4c0e9e4SHong Zhang } 2459f4c0e9e4SHong Zhang } 2460f4c0e9e4SHong Zhang bj++; 2461f4c0e9e4SHong Zhang } 2462f4c0e9e4SHong Zhang } 246304d41228SHong Zhang /* 246404d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 246504d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 246604d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 246704d41228SHong Zhang */ 2468f4c0e9e4SHong Zhang 2469f4c0e9e4SHong Zhang /* send values to its owners */ 2470f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2471f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2472ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 247356faa61eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr); 2474ca54ac64SHong Zhang /* 247556faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 247656faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2477ca54ac64SHong Zhang */ 2478ca54ac64SHong Zhang } 2479f4c0e9e4SHong Zhang } 2480f4c0e9e4SHong Zhang 2481f4c0e9e4SHong Zhang /* receive values */ 2482ca54ac64SHong Zhang if (rank){ 2483f4c0e9e4SHong Zhang rvalues = work; 2484ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2485f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 248656faa61eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr); 2487f4c0e9e4SHong Zhang /* process values */ 2488f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2489ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2490f4c0e9e4SHong Zhang } 2491ca54ac64SHong Zhang /* 249256faa61eSBarry Smith PetscSynchronizedPrintf(A->comm,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 249356faa61eSBarry Smith PetscSynchronizedFlush(A->comm); 2494ca54ac64SHong Zhang */ 2495f4c0e9e4SHong Zhang } 2496ca54ac64SHong Zhang } 2497f4c0e9e4SHong Zhang 2498b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(v,&va);CHKERRQ(ierr); 2499ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250024d5174aSHong Zhang PetscFunctionReturn(0); 250124d5174aSHong Zhang } 25022798e883SHong Zhang 25032798e883SHong Zhang #undef __FUNCT__ 25042798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ" 2505c14dc6b6SHong Zhang int MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 25062798e883SHong Zhang { 25072798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2508ffe4fb16SHong Zhang int ierr,mbs=mat->mbs,bs=mat->bs; 2509ffe4fb16SHong Zhang PetscScalar mone=-1.0,*x,*b,*ptr,zero=0.0; 2510ffe4fb16SHong Zhang Vec bb1; 2511ffe4fb16SHong Zhang 2512ffe4fb16SHong Zhang PetscFunctionBegin; 2513ffe4fb16SHong Zhang if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 2514ffe4fb16SHong Zhang if (bs > 1) 2515ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2516ffe4fb16SHong Zhang 2517ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2518ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2519ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2520ffe4fb16SHong Zhang its--; 2521ffe4fb16SHong Zhang } 2522ffe4fb16SHong Zhang 2523ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2524ffe4fb16SHong Zhang while (its--){ 2525ffe4fb16SHong Zhang 2526ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2527ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2528ffe4fb16SHong Zhang 2529ffe4fb16SHong Zhang /* copy xx into slvec0a */ 2530b1d4fb26SBarry Smith ierr = VecGetArrayFast(mat->slvec0,&ptr);CHKERRQ(ierr); 2531b1d4fb26SBarry Smith ierr = VecGetArrayFast(xx,&x);CHKERRQ(ierr); 2532ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2533b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(mat->slvec0,&ptr);CHKERRQ(ierr); 2534ffe4fb16SHong Zhang 2535ffe4fb16SHong Zhang ierr = VecScale(&mone,mat->slvec0);CHKERRQ(ierr); 2536ffe4fb16SHong Zhang 2537ffe4fb16SHong Zhang /* copy bb into slvec1a */ 2538b1d4fb26SBarry Smith ierr = VecGetArrayFast(mat->slvec1,&ptr);CHKERRQ(ierr); 2539b1d4fb26SBarry Smith ierr = VecGetArrayFast(bb,&b);CHKERRQ(ierr); 2540ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2541b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(mat->slvec1,&ptr);CHKERRQ(ierr); 2542ffe4fb16SHong Zhang 2543ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2544ffe4fb16SHong Zhang ierr = VecSet(&zero,mat->slvec1b);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang 2546ffe4fb16SHong Zhang ierr = VecScatterBegin(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2547b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(xx,&x);CHKERRQ(ierr); 2548b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(bb,&b);CHKERRQ(ierr); 2549ffe4fb16SHong Zhang ierr = VecScatterEnd(mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD,mat->sMvctx);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang 2551ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2552ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2553ffe4fb16SHong Zhang 2554ffe4fb16SHong Zhang /* local diagonal sweep */ 2555ffe4fb16SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2556ffe4fb16SHong Zhang } 2557ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang } else { 2559ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2560ffe4fb16SHong Zhang } 2561ffe4fb16SHong Zhang PetscFunctionReturn(0); 2562ffe4fb16SHong Zhang } 2563ffe4fb16SHong Zhang 2564ffe4fb16SHong Zhang #undef __FUNCT__ 2565ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm" 2566ffe4fb16SHong Zhang int MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 2567ffe4fb16SHong Zhang { 2568ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 25692798e883SHong Zhang int ierr; 2570d05c616dSSatish Balay PetscScalar mone=-1.0; 25712798e883SHong Zhang Vec lvec1,bb1; 25722798e883SHong Zhang 25732798e883SHong Zhang PetscFunctionBegin; 257491723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 25752798e883SHong Zhang if (mat->bs > 1) 25762798e883SHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 25772798e883SHong Zhang 2578c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 25792798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 2580bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 25812798e883SHong Zhang its--; 25822798e883SHong Zhang } 25832798e883SHong Zhang 25842798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 25852798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25862798e883SHong Zhang while (its--){ 25872798e883SHong Zhang ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25882798e883SHong Zhang 25892798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 25902798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 25912798e883SHong Zhang ierr = VecScale(&mone,lvec1);CHKERRQ(ierr); 25922798e883SHong Zhang 25932798e883SHong Zhang ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 25942798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 25952798e883SHong Zhang ierr = VecScatterBegin(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 25962798e883SHong Zhang 25972798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 25982798e883SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 25992798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26002798e883SHong Zhang 26012798e883SHong Zhang ierr = VecScatterEnd(lvec1,bb1,ADD_VALUES,SCATTER_REVERSE,mat->Mvctx);CHKERRQ(ierr); 26022798e883SHong Zhang 2603c14dc6b6SHong Zhang /* diagonal sweep */ 2604bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26052798e883SHong Zhang } 26062798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26072798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2608c14dc6b6SHong Zhang } else { 2609c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2610c14dc6b6SHong Zhang } 26112798e883SHong Zhang PetscFunctionReturn(0); 26122798e883SHong Zhang } 26132798e883SHong Zhang 2614