1*f2a5309cSSatish Balay /*$Id: mpisbaij.c,v 1.45 2001/03/07 19:05:15 balay Exp balay $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 1900319c27SSatish Balay extern int MatZeroRows_SeqBAIJ(Mat,IS,Scalar *); 20d0566740SHong Zhang extern int MatGetRowMax_MPISBAIJ(Mat,Vec); 21a30f8f8cSSatish Balay 22a30f8f8cSSatish Balay /* UGLY, ugly, ugly 23a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 24a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 25a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 26a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 27a30f8f8cSSatish Balay into the single precision data structures. 28a30f8f8cSSatish Balay */ 29a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 34a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 35a30f8f8cSSatish Balay #else 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 39a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 40a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 41a30f8f8cSSatish Balay #endif 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay EXTERN_C_BEGIN 44a30f8f8cSSatish Balay #undef __FUNC__ 45b0a32e0cSBarry Smith #define __FUNC__ "MatStoreValues_MPISBAIJ" 46a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 47a30f8f8cSSatish Balay { 48f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 49a30f8f8cSSatish Balay int ierr; 50a30f8f8cSSatish Balay 51a30f8f8cSSatish Balay PetscFunctionBegin; 52a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 53a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 54a30f8f8cSSatish Balay PetscFunctionReturn(0); 55a30f8f8cSSatish Balay } 56a30f8f8cSSatish Balay EXTERN_C_END 57a30f8f8cSSatish Balay 58a30f8f8cSSatish Balay EXTERN_C_BEGIN 59a30f8f8cSSatish Balay #undef __FUNC__ 60b0a32e0cSBarry Smith #define __FUNC__ "MatRetrieveValues_MPISBAIJ" 61a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 62a30f8f8cSSatish Balay { 63f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 64a30f8f8cSSatish Balay int ierr; 65a30f8f8cSSatish Balay 66a30f8f8cSSatish Balay PetscFunctionBegin; 67a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 68a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 69a30f8f8cSSatish Balay PetscFunctionReturn(0); 70a30f8f8cSSatish Balay } 71a30f8f8cSSatish Balay EXTERN_C_END 72a30f8f8cSSatish Balay 73a30f8f8cSSatish Balay /* 74a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 75a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 76a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 77a30f8f8cSSatish Balay length of colmap equals the global matrix length. 78a30f8f8cSSatish Balay */ 79a30f8f8cSSatish Balay #undef __FUNC__ 80b0a32e0cSBarry Smith #define __FUNC__ "CreateColmap_MPISBAIJ_Private" 81a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 82a30f8f8cSSatish Balay { 83a30f8f8cSSatish Balay PetscFunctionBegin; 8429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 8596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 86a30f8f8cSSatish Balay } 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define CHUNKSIZE 10 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 91a30f8f8cSSatish Balay { \ 92a30f8f8cSSatish Balay \ 93a30f8f8cSSatish Balay brow = row/bs; \ 94a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 96a30f8f8cSSatish Balay bcol = col/bs; \ 97a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 98a30f8f8cSSatish Balay low = 0; high = nrow; \ 99a30f8f8cSSatish Balay while (high-low > 3) { \ 100a30f8f8cSSatish Balay t = (low+high)/2; \ 101a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 102a30f8f8cSSatish Balay else low = t; \ 103a30f8f8cSSatish Balay } \ 104a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 105a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 106a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 107a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 108a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 109a30f8f8cSSatish Balay else *bap = value; \ 110a30f8f8cSSatish Balay goto a_noinsert; \ 111a30f8f8cSSatish Balay } \ 112a30f8f8cSSatish Balay } \ 113a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 11429bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 115a30f8f8cSSatish Balay if (nrow >= rmax) { \ 116a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 117a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 118a30f8f8cSSatish Balay MatScalar *new_a; \ 119a30f8f8cSSatish Balay \ 12029bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay /* malloc new storage space */ \ 123a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 12482502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 126a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 127a30f8f8cSSatish Balay \ 128a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 129a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 130a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 135a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 137a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay /* free up old matrix storage */ \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 143a30f8f8cSSatish Balay } \ 144a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 145a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 146a30f8f8cSSatish Balay \ 147a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 148a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 149b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 150a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 151a30f8f8cSSatish Balay a->reallocs++; \ 152a30f8f8cSSatish Balay a->s_nz++; \ 153a30f8f8cSSatish Balay } \ 154a30f8f8cSSatish Balay N = nrow++ - 1; \ 155a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 156a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 157a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 158a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 159a30f8f8cSSatish Balay } \ 160a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 161a30f8f8cSSatish Balay rp[_i] = bcol; \ 162a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 163a30f8f8cSSatish Balay a_noinsert:; \ 164a30f8f8cSSatish Balay ailen[brow] = nrow; \ 165a30f8f8cSSatish Balay } 166a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 167a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 168a30f8f8cSSatish Balay { \ 169a30f8f8cSSatish Balay brow = row/bs; \ 170a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 171a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 172a30f8f8cSSatish Balay bcol = col/bs; \ 173a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 174a30f8f8cSSatish Balay low = 0; high = nrow; \ 175a30f8f8cSSatish Balay while (high-low > 3) { \ 176a30f8f8cSSatish Balay t = (low+high)/2; \ 177a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 178a30f8f8cSSatish Balay else low = t; \ 179a30f8f8cSSatish Balay } \ 180a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 181a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 182a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 183a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 184a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 185a30f8f8cSSatish Balay else *bap = value; \ 186a30f8f8cSSatish Balay goto b_noinsert; \ 187a30f8f8cSSatish Balay } \ 188a30f8f8cSSatish Balay } \ 189a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 19029bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 191a30f8f8cSSatish Balay if (nrow >= rmax) { \ 192a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 193a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 194a30f8f8cSSatish Balay MatScalar *new_a; \ 195a30f8f8cSSatish Balay \ 19629bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay /* malloc new storage space */ \ 199a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 20082502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 201a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 202a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 203a30f8f8cSSatish Balay \ 204a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 205a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 206a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 211a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 213a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay /* free up old matrix storage */ \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 219a30f8f8cSSatish Balay } \ 220a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 221a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 222a30f8f8cSSatish Balay \ 223a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 224a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 225b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 226a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 227a30f8f8cSSatish Balay b->reallocs++; \ 228a30f8f8cSSatish Balay b->nz++; \ 229a30f8f8cSSatish Balay } \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 232a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 233a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 234a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 235a30f8f8cSSatish Balay } \ 236a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 237a30f8f8cSSatish Balay rp[_i] = bcol; \ 238a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 239a30f8f8cSSatish Balay b_noinsert:; \ 240a30f8f8cSSatish Balay bilen[brow] = nrow; \ 241a30f8f8cSSatish Balay } 242a30f8f8cSSatish Balay #endif 243a30f8f8cSSatish Balay 244a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 245a30f8f8cSSatish Balay #undef __FUNC__ 246b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPISBAIJ" 247a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 248a30f8f8cSSatish Balay { 249a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 250a30f8f8cSSatish Balay int ierr,i,N = m*n; 251a30f8f8cSSatish Balay MatScalar *vsingle; 252a30f8f8cSSatish Balay 253a30f8f8cSSatish Balay PetscFunctionBegin; 254a30f8f8cSSatish Balay if (N > b->setvalueslen) { 255a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 25682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 257a30f8f8cSSatish Balay b->setvalueslen = N; 258a30f8f8cSSatish Balay } 259a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 260a30f8f8cSSatish Balay 261a30f8f8cSSatish Balay for (i=0; i<N; i++) { 262a30f8f8cSSatish Balay vsingle[i] = v[i]; 263a30f8f8cSSatish Balay } 264a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 265a30f8f8cSSatish Balay PetscFunctionReturn(0); 266a30f8f8cSSatish Balay } 267a30f8f8cSSatish Balay 268a30f8f8cSSatish Balay #undef __FUNC__ 269b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPISBAIJ" 270a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 271a30f8f8cSSatish Balay { 272a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 273a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 274a30f8f8cSSatish Balay MatScalar *vsingle; 275a30f8f8cSSatish Balay 276a30f8f8cSSatish Balay PetscFunctionBegin; 277a30f8f8cSSatish Balay if (N > b->setvalueslen) { 278a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 27982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 280a30f8f8cSSatish Balay b->setvalueslen = N; 281a30f8f8cSSatish Balay } 282a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 283a30f8f8cSSatish Balay for (i=0; i<N; i++) { 284a30f8f8cSSatish Balay vsingle[i] = v[i]; 285a30f8f8cSSatish Balay } 286a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 287a30f8f8cSSatish Balay PetscFunctionReturn(0); 288a30f8f8cSSatish Balay } 289a30f8f8cSSatish Balay 290a30f8f8cSSatish Balay #undef __FUNC__ 291b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPISBAIJ_HT" 292a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 293a30f8f8cSSatish Balay { 294a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 295a30f8f8cSSatish Balay int ierr,i,N = m*n; 296a30f8f8cSSatish Balay MatScalar *vsingle; 297a30f8f8cSSatish Balay 298a30f8f8cSSatish Balay PetscFunctionBegin; 29929bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3004d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 301a30f8f8cSSatish Balay } 302a30f8f8cSSatish Balay 303a30f8f8cSSatish Balay #undef __FUNC__ 304b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPISBAIJ_HT" 305a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 306a30f8f8cSSatish Balay { 307a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 308a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 309a30f8f8cSSatish Balay MatScalar *vsingle; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay PetscFunctionBegin; 31229bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 3134d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 314a30f8f8cSSatish Balay } 315a30f8f8cSSatish Balay #endif 316a30f8f8cSSatish Balay 317a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 318a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 319a30f8f8cSSatish Balay */ 320a30f8f8cSSatish Balay #undef __FUNC__ 321b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ" 322a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 323a30f8f8cSSatish Balay { 324a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 325a30f8f8cSSatish Balay MatScalar value; 326b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 327a30f8f8cSSatish Balay int ierr,i,j,row,col; 328b5df2d14SHong Zhang int rstart_orig=baij->rstart_bs; 329a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 330a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 331a30f8f8cSSatish Balay 332a30f8f8cSSatish Balay /* Some Variables required in the macro */ 333a30f8f8cSSatish Balay Mat A = baij->A; 334a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 335a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 336a30f8f8cSSatish Balay MatScalar *aa=a->a; 337a30f8f8cSSatish Balay 338a30f8f8cSSatish Balay Mat B = baij->B; 339a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 340a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 341a30f8f8cSSatish Balay MatScalar *ba=b->a; 342a30f8f8cSSatish Balay 343a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 344a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 345a30f8f8cSSatish Balay MatScalar *ap,*bap; 346a30f8f8cSSatish Balay 347a30f8f8cSSatish Balay /* for stash */ 348f65c83cfSHong Zhang int n_loc, *in_loc=0; 349f65c83cfSHong Zhang MatScalar *v_loc=0; 350a30f8f8cSSatish Balay 351a30f8f8cSSatish Balay PetscFunctionBegin; 352a30f8f8cSSatish Balay 353a30f8f8cSSatish Balay if(!baij->donotstash){ 35482502324SSatish Balay ierr = PetscMalloc(n*sizeof(int),&in_loc);CHKERRQ(ierr); 35582502324SSatish Balay ierr = PetscMalloc(n*sizeof(MatScalar),&v_loc);CHKERRQ(ierr); 356a30f8f8cSSatish Balay } 357a30f8f8cSSatish Balay 358a30f8f8cSSatish Balay for (i=0; i<m; i++) { 359a30f8f8cSSatish Balay if (im[i] < 0) continue; 360a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 361b5df2d14SHong Zhang if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 362a30f8f8cSSatish Balay #endif 363a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 364a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 365a30f8f8cSSatish Balay for (j=0; j<n; j++) { 366f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 367a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 368a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 369a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 370a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 371a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 372a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 373a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 374a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 375a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 376b5df2d14SHong Zhang else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Col too large");} 377a30f8f8cSSatish Balay #endif 378a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 379a30f8f8cSSatish Balay if (mat->was_assembled) { 380a30f8f8cSSatish Balay if (!baij->colmap) { 381a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } 383a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 384a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 385a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 386a30f8f8cSSatish Balay #else 387a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 388a30f8f8cSSatish Balay #endif 389a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 390a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 391a30f8f8cSSatish Balay col = in[j]; 392a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 393a30f8f8cSSatish Balay B = baij->B; 394a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 395a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 396a30f8f8cSSatish Balay ba=b->a; 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } else col = in[j]; 399a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 400a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 401a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } else { /* off processor entry */ 405a30f8f8cSSatish Balay if (!baij->donotstash) { 406a30f8f8cSSatish Balay n_loc = 0; 407a30f8f8cSSatish Balay for (j=0; j<n; j++){ 408f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 409a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 410a30f8f8cSSatish Balay if (roworiented) { 411a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 412a30f8f8cSSatish Balay } else { 413a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 414a30f8f8cSSatish Balay } 415a30f8f8cSSatish Balay n_loc++; 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 418a30f8f8cSSatish Balay } 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay 422a30f8f8cSSatish Balay if(!baij->donotstash){ 423a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 424a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay } 426a30f8f8cSSatish Balay PetscFunctionReturn(0); 427a30f8f8cSSatish Balay } 428a30f8f8cSSatish Balay 429a30f8f8cSSatish Balay #undef __FUNC__ 430b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPISBAIJ" 431a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 432a30f8f8cSSatish Balay { 433a30f8f8cSSatish Balay PetscFunctionBegin; 43429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 43596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 436a30f8f8cSSatish Balay } 437a30f8f8cSSatish Balay 438a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 439a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 440a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 441a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 442a30f8f8cSSatish Balay #undef __FUNC__ 443b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPISBAIJ_HT_MatScalar" 444a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 445a30f8f8cSSatish Balay { 446a30f8f8cSSatish Balay PetscFunctionBegin; 44729bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 44896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 449a30f8f8cSSatish Balay } 450a30f8f8cSSatish Balay 451a30f8f8cSSatish Balay #undef __FUNC__ 452b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 453a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 454a30f8f8cSSatish Balay { 455a30f8f8cSSatish Balay PetscFunctionBegin; 45629bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 45796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 458a30f8f8cSSatish Balay } 459a30f8f8cSSatish Balay 460a30f8f8cSSatish Balay #undef __FUNC__ 461b0a32e0cSBarry Smith #define __FUNC__ "MatGetValues_MPISBAIJ" 462a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 463a30f8f8cSSatish Balay { 464f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 465a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 466a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 467a30f8f8cSSatish Balay 468a30f8f8cSSatish Balay PetscFunctionBegin; 469a30f8f8cSSatish Balay for (i=0; i<m; i++) { 47029bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 471b5df2d14SHong Zhang if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 472a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 473a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 474a30f8f8cSSatish Balay for (j=0; j<n; j++) { 47529bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 476b5df2d14SHong Zhang if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 477a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 478a30f8f8cSSatish Balay col = idxn[j] - bscstart; 479c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 480a30f8f8cSSatish Balay } else { 481a30f8f8cSSatish Balay if (!baij->colmap) { 482a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 483a30f8f8cSSatish Balay } 484a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 485a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 486a30f8f8cSSatish Balay data --; 487a30f8f8cSSatish Balay #else 488a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 489a30f8f8cSSatish Balay #endif 490a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 491a30f8f8cSSatish Balay else { 492a30f8f8cSSatish Balay col = data + idxn[j]%bs; 493c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 494a30f8f8cSSatish Balay } 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } else { 49829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay } 501a30f8f8cSSatish Balay PetscFunctionReturn(0); 502a30f8f8cSSatish Balay } 503a30f8f8cSSatish Balay 504a30f8f8cSSatish Balay #undef __FUNC__ 505b0a32e0cSBarry Smith #define __FUNC__ "MatNorm_MPISBAIJ" 506a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 507a30f8f8cSSatish Balay { 508a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 509bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 510bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 511a30f8f8cSSatish Balay int ierr; 512a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 513a30f8f8cSSatish Balay 514a30f8f8cSSatish Balay PetscFunctionBegin; 515a30f8f8cSSatish Balay if (baij->size == 1) { 516a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 517a30f8f8cSSatish Balay } else { 518a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 51982502324SSatish Balay ierr = PetscMalloc(2*sizeof(double),&lnorm2);CHKERRQ(ierr); 520a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 521a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 522a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 523a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 524a30f8f8cSSatish Balay /* 525a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 526a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 527a30f8f8cSSatish Balay */ 528a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 529a30f8f8cSSatish Balay /* 530a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 531a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 532a30f8f8cSSatish Balay 533a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 534a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 535a30f8f8cSSatish Balay } else { 53629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay } 539a30f8f8cSSatish Balay PetscFunctionReturn(0); 540a30f8f8cSSatish Balay } 541a30f8f8cSSatish Balay 542a30f8f8cSSatish Balay /* 543a30f8f8cSSatish Balay Creates the hash table, and sets the table 544a30f8f8cSSatish Balay This table is created only once. 545a30f8f8cSSatish Balay If new entried need to be added to the matrix 546a30f8f8cSSatish Balay then the hash table has to be destroyed and 547a30f8f8cSSatish Balay recreated. 548a30f8f8cSSatish Balay */ 549a30f8f8cSSatish Balay #undef __FUNC__ 550b0a32e0cSBarry Smith #define __FUNC__ "MatCreateHashTable_MPISBAIJ_Private" 551a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 552a30f8f8cSSatish Balay { 553a30f8f8cSSatish Balay PetscFunctionBegin; 55429bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 55596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 556a30f8f8cSSatish Balay } 557a30f8f8cSSatish Balay 558a30f8f8cSSatish Balay #undef __FUNC__ 559b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyBegin_MPISBAIJ" 560a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 561a30f8f8cSSatish Balay { 562a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 563a30f8f8cSSatish Balay int ierr,nstash,reallocs; 564a30f8f8cSSatish Balay InsertMode addv; 565a30f8f8cSSatish Balay 566a30f8f8cSSatish Balay PetscFunctionBegin; 567a30f8f8cSSatish Balay if (baij->donotstash) { 568a30f8f8cSSatish Balay PetscFunctionReturn(0); 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay 571a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 572a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 573a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 57429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 575a30f8f8cSSatish Balay } 576a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 577a30f8f8cSSatish Balay 578a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 579a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 580a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 581b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 582a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 583b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 584a30f8f8cSSatish Balay PetscFunctionReturn(0); 585a30f8f8cSSatish Balay } 586a30f8f8cSSatish Balay 587a30f8f8cSSatish Balay #undef __FUNC__ 588b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyEnd_MPISBAIJ" 589a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 590a30f8f8cSSatish Balay { 591a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 592a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 593a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 594a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 595a30f8f8cSSatish Balay int *row,*col,other_disassembled; 596a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 597a30f8f8cSSatish Balay MatScalar *val; 598a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 5996f651dedSSatish Balay /* int rank;*/ 600a30f8f8cSSatish Balay 601a30f8f8cSSatish Balay PetscFunctionBegin; 602a30f8f8cSSatish Balay /* remove 2 line below later */ 6036f651dedSSatish Balay /*ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); */ 604a30f8f8cSSatish Balay 605a30f8f8cSSatish Balay if (!baij->donotstash) { 606a30f8f8cSSatish Balay while (1) { 607a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 608a30f8f8cSSatish Balay /* 609a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 610a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 611a30f8f8cSSatish Balay */ 612a30f8f8cSSatish Balay if (!flg) break; 613a30f8f8cSSatish Balay 614a30f8f8cSSatish Balay for (i=0; i<n;) { 615a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 616a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 617a30f8f8cSSatish Balay if (j < n) ncols = j-i; 618a30f8f8cSSatish Balay else ncols = n-i; 619a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 620a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 621a30f8f8cSSatish Balay i = j; 622a30f8f8cSSatish Balay } 623a30f8f8cSSatish Balay } 624a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 625a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 626a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 627a30f8f8cSSatish Balay restore the original flags */ 628a30f8f8cSSatish Balay r1 = baij->roworiented; 629a30f8f8cSSatish Balay r2 = a->roworiented; 630a30f8f8cSSatish Balay r3 = b->roworiented; 631a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 632a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 633a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 634a30f8f8cSSatish Balay while (1) { 635a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 636a30f8f8cSSatish Balay if (!flg) break; 637a30f8f8cSSatish Balay 638a30f8f8cSSatish Balay for (i=0; i<n;) { 639a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 640a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 641a30f8f8cSSatish Balay if (j < n) ncols = j-i; 642a30f8f8cSSatish Balay else ncols = n-i; 643a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 644a30f8f8cSSatish Balay i = j; 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay } 647a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 648a30f8f8cSSatish Balay baij->roworiented = r1; 649a30f8f8cSSatish Balay a->roworiented = r2; 650a30f8f8cSSatish Balay b->roworiented = r3; 651a30f8f8cSSatish Balay } 652a30f8f8cSSatish Balay 653a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 654a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 655a30f8f8cSSatish Balay 656a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 657a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 658a30f8f8cSSatish Balay /* 659a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 660a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 661a30f8f8cSSatish Balay */ 662a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 663a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 664a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 665c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay 669a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 670a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 671a30f8f8cSSatish Balay } 672a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 673a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 676a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 677b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 678a30f8f8cSSatish Balay baij->ht_total_ct = 0; 679a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 680a30f8f8cSSatish Balay } 681a30f8f8cSSatish Balay #endif 682a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 683c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 684a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 685a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay 688a30f8f8cSSatish Balay if (baij->rowvalues) { 689a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 690a30f8f8cSSatish Balay baij->rowvalues = 0; 691a30f8f8cSSatish Balay } 692a30f8f8cSSatish Balay PetscFunctionReturn(0); 693a30f8f8cSSatish Balay } 694a30f8f8cSSatish Balay 695a30f8f8cSSatish Balay #undef __FUNC__ 696b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 697b0a32e0cSBarry Smith static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 698a30f8f8cSSatish Balay { 699a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 700fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 701a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 702b0a32e0cSBarry Smith PetscViewer sviewer; 703f3ef73ceSBarry Smith PetscViewerFormat format; 704a30f8f8cSSatish Balay 705a30f8f8cSSatish Balay PetscFunctionBegin; 706b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 707fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 708a30f8f8cSSatish Balay if (isascii) { 709b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 710fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 711a30f8f8cSSatish Balay MatInfo info; 712a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 714b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 715b5df2d14SHong Zhang rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 716a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 718b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 719a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 720b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 721b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 722a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 723a30f8f8cSSatish Balay PetscFunctionReturn(0); 724fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 725b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 726a30f8f8cSSatish Balay PetscFunctionReturn(0); 727a30f8f8cSSatish Balay } 728a30f8f8cSSatish Balay } 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay if (isdraw) { 731b0a32e0cSBarry Smith PetscDraw draw; 732a30f8f8cSSatish Balay PetscTruth isnull; 733b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 734b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay 737a30f8f8cSSatish Balay if (size == 1) { 738a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 739a30f8f8cSSatish Balay } else { 740a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 741a30f8f8cSSatish Balay Mat A; 74265d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 74365d70643SHong Zhang Mat_SeqBAIJ *Bloc; 744b5df2d14SHong Zhang int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 745a30f8f8cSSatish Balay MatScalar *a; 746a30f8f8cSSatish Balay 747a30f8f8cSSatish Balay if (!rank) { 748bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 749a30f8f8cSSatish Balay } else { 750f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 751a30f8f8cSSatish Balay } 752b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 753a30f8f8cSSatish Balay 754a30f8f8cSSatish Balay /* copy over the A part */ 75565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 756a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 75782502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 758a30f8f8cSSatish Balay 759a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 760a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 761a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 762a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 763a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 764a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 765a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 766a30f8f8cSSatish Balay col++; a += bs; 767a30f8f8cSSatish Balay } 768a30f8f8cSSatish Balay } 769a30f8f8cSSatish Balay } 770a30f8f8cSSatish Balay /* copy over the B part */ 77165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 77265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 773a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 774a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 775a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 776a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 777a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 778a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 779a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 780a30f8f8cSSatish Balay col++; a += bs; 781a30f8f8cSSatish Balay } 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay } 784a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 785a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 786a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 787a30f8f8cSSatish Balay /* 788a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 789b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 790a30f8f8cSSatish Balay */ 791b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 79265d70643SHong Zhang if (!rank) { 793a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 794a30f8f8cSSatish Balay } 795b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 796a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 797a30f8f8cSSatish Balay } 798a30f8f8cSSatish Balay PetscFunctionReturn(0); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay 801a30f8f8cSSatish Balay #undef __FUNC__ 802b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPISBAIJ" 803b0a32e0cSBarry Smith int MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 804a30f8f8cSSatish Balay { 805a30f8f8cSSatish Balay int ierr; 806a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 807a30f8f8cSSatish Balay 808a30f8f8cSSatish Balay PetscFunctionBegin; 809b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 810fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 811b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 812fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 813a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 814a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 815a30f8f8cSSatish Balay } else { 81629bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 817a30f8f8cSSatish Balay } 818a30f8f8cSSatish Balay PetscFunctionReturn(0); 819a30f8f8cSSatish Balay } 820a30f8f8cSSatish Balay 821a30f8f8cSSatish Balay #undef __FUNC__ 822b0a32e0cSBarry Smith #define __FUNC__ "MatDestroy_MPISBAIJ" 823a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 824a30f8f8cSSatish Balay { 825a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 826a30f8f8cSSatish Balay int ierr; 827a30f8f8cSSatish Balay 828a30f8f8cSSatish Balay PetscFunctionBegin; 829a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 830b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 831a30f8f8cSSatish Balay #endif 832a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 833a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 834a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 835a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 836a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 837a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 838a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 839a30f8f8cSSatish Balay #else 840a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 841a30f8f8cSSatish Balay #endif 842a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 843a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 844a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 845a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 846a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 847a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 848a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 849a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 850a30f8f8cSSatish Balay #endif 851a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 852a30f8f8cSSatish Balay PetscFunctionReturn(0); 853a30f8f8cSSatish Balay } 854a30f8f8cSSatish Balay 855a30f8f8cSSatish Balay #undef __FUNC__ 856b0a32e0cSBarry Smith #define __FUNC__ "MatMult_MPISBAIJ" 857a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 858a30f8f8cSSatish Balay { 859a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 860a30f8f8cSSatish Balay int ierr,nt; 861a30f8f8cSSatish Balay 862a30f8f8cSSatish Balay PetscFunctionBegin; 863a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 864b5df2d14SHong Zhang if (nt != A->n) { 86529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 866a30f8f8cSSatish Balay } 867a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 868b5df2d14SHong Zhang if (nt != A->m) { 86929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 870a30f8f8cSSatish Balay } 87165d70643SHong Zhang 872b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 873b941877fSHong Zhang /* do diagonal part */ 874b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 875b941877fSHong Zhang /* do supperdiagonal part */ 876b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 877b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 878b941877fSHong Zhang /* do subdiagonal part */ 879b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 880b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 881b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 88265d70643SHong Zhang 883a30f8f8cSSatish Balay PetscFunctionReturn(0); 884a30f8f8cSSatish Balay } 885a30f8f8cSSatish Balay 886a30f8f8cSSatish Balay #undef __FUNC__ 887b0a32e0cSBarry Smith #define __FUNC__ "MatMultAdd_MPISBAIJ" 888a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 889a30f8f8cSSatish Balay { 890de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 891aa482183SHong Zhang int ierr; 892a30f8f8cSSatish Balay 893a30f8f8cSSatish Balay PetscFunctionBegin; 894b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 895b941877fSHong Zhang /* do diagonal part */ 896b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 897b941877fSHong Zhang /* do supperdiagonal part */ 898b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 899de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 900de8b6608SHong Zhang 901b941877fSHong Zhang /* do subdiagonal part */ 902a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 903a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 904a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 905aa482183SHong Zhang 906a30f8f8cSSatish Balay PetscFunctionReturn(0); 907a30f8f8cSSatish Balay } 908a30f8f8cSSatish Balay 909a30f8f8cSSatish Balay #undef __FUNC__ 910b0a32e0cSBarry Smith #define __FUNC__ "MatMultTranspose_MPISBAIJ" 911a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 912a30f8f8cSSatish Balay { 913a30f8f8cSSatish Balay PetscFunctionBegin; 91429bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMult()."); 91596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 916a30f8f8cSSatish Balay } 917a30f8f8cSSatish Balay 918a30f8f8cSSatish Balay #undef __FUNC__ 919b0a32e0cSBarry Smith #define __FUNC__ "MatMultTransposeAdd_MPISBAIJ" 920a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 921a30f8f8cSSatish Balay { 922a30f8f8cSSatish Balay PetscFunctionBegin; 92329bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. Call MatMultAdd()."); 92496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 925a30f8f8cSSatish Balay } 926a30f8f8cSSatish Balay 927a30f8f8cSSatish Balay /* 928a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 929a30f8f8cSSatish Balay diagonal block 930a30f8f8cSSatish Balay */ 931a30f8f8cSSatish Balay #undef __FUNC__ 932b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonal_MPISBAIJ" 933a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 934a30f8f8cSSatish Balay { 935a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 936a30f8f8cSSatish Balay int ierr; 937a30f8f8cSSatish Balay 938a30f8f8cSSatish Balay PetscFunctionBegin; 93929bbc08cSBarry Smith /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 940a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 941a30f8f8cSSatish Balay PetscFunctionReturn(0); 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay 944a30f8f8cSSatish Balay #undef __FUNC__ 945b0a32e0cSBarry Smith #define __FUNC__ "MatScale_MPISBAIJ" 946a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 947a30f8f8cSSatish Balay { 948a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 949a30f8f8cSSatish Balay int ierr; 950a30f8f8cSSatish Balay 951a30f8f8cSSatish Balay PetscFunctionBegin; 952a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 953a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 954a30f8f8cSSatish Balay PetscFunctionReturn(0); 955a30f8f8cSSatish Balay } 956a30f8f8cSSatish Balay 957a30f8f8cSSatish Balay #undef __FUNC__ 958b0a32e0cSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPISBAIJ" 959a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 960a30f8f8cSSatish Balay { 961a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 962a30f8f8cSSatish Balay 963a30f8f8cSSatish Balay PetscFunctionBegin; 964a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 965a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 966a30f8f8cSSatish Balay PetscFunctionReturn(0); 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay 969a30f8f8cSSatish Balay #undef __FUNC__ 970b0a32e0cSBarry Smith #define __FUNC__ "MatGetRow_MPISBAIJ" 971a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 972a30f8f8cSSatish Balay { 973a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 974a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 975a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 976a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 977a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 978a30f8f8cSSatish Balay 979a30f8f8cSSatish Balay PetscFunctionBegin; 98029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 981a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 982a30f8f8cSSatish Balay 983a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 984a30f8f8cSSatish Balay /* 985a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 986a30f8f8cSSatish Balay */ 987a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 988a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 989a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 990a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 991a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 992a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 993a30f8f8cSSatish Balay } 994b0a32e0cSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)),&mat->rowvalues);CHKERRQ(ierr); 995a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 996a30f8f8cSSatish Balay } 997a30f8f8cSSatish Balay 99829bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 999a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1000a30f8f8cSSatish Balay 1001a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1002a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1003a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1004a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1005a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1006a30f8f8cSSatish Balay nztot = nzA + nzB; 1007a30f8f8cSSatish Balay 1008a30f8f8cSSatish Balay cmap = mat->garray; 1009a30f8f8cSSatish Balay if (v || idx) { 1010a30f8f8cSSatish Balay if (nztot) { 1011a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1012a30f8f8cSSatish Balay int imark = -1; 1013a30f8f8cSSatish Balay if (v) { 1014a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1015a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1016a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1017a30f8f8cSSatish Balay else break; 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay imark = i; 1020a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1021a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1022a30f8f8cSSatish Balay } 1023a30f8f8cSSatish Balay if (idx) { 1024a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1025a30f8f8cSSatish Balay if (imark > -1) { 1026a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1027a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1028a30f8f8cSSatish Balay } 1029a30f8f8cSSatish Balay } else { 1030a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1031a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1032a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1033a30f8f8cSSatish Balay else break; 1034a30f8f8cSSatish Balay } 1035a30f8f8cSSatish Balay imark = i; 1036a30f8f8cSSatish Balay } 1037a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1038a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1039a30f8f8cSSatish Balay } 1040a30f8f8cSSatish Balay } else { 1041a30f8f8cSSatish Balay if (idx) *idx = 0; 1042a30f8f8cSSatish Balay if (v) *v = 0; 1043a30f8f8cSSatish Balay } 1044a30f8f8cSSatish Balay } 1045a30f8f8cSSatish Balay *nz = nztot; 1046a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1047a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1048a30f8f8cSSatish Balay PetscFunctionReturn(0); 1049a30f8f8cSSatish Balay } 1050a30f8f8cSSatish Balay 1051a30f8f8cSSatish Balay #undef __FUNC__ 1052b0a32e0cSBarry Smith #define __FUNC__ "MatRestoreRow_MPISBAIJ" 1053a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1054a30f8f8cSSatish Balay { 1055a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1056a30f8f8cSSatish Balay 1057a30f8f8cSSatish Balay PetscFunctionBegin; 1058a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 105929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1060a30f8f8cSSatish Balay } 1061a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1062a30f8f8cSSatish Balay PetscFunctionReturn(0); 1063a30f8f8cSSatish Balay } 1064a30f8f8cSSatish Balay 1065a30f8f8cSSatish Balay #undef __FUNC__ 1066b0a32e0cSBarry Smith #define __FUNC__ "MatGetBlockSize_MPISBAIJ" 1067a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1068a30f8f8cSSatish Balay { 1069a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1070a30f8f8cSSatish Balay 1071a30f8f8cSSatish Balay PetscFunctionBegin; 1072a30f8f8cSSatish Balay *bs = baij->bs; 1073a30f8f8cSSatish Balay PetscFunctionReturn(0); 1074a30f8f8cSSatish Balay } 1075a30f8f8cSSatish Balay 1076a30f8f8cSSatish Balay #undef __FUNC__ 1077b0a32e0cSBarry Smith #define __FUNC__ "MatZeroEntries_MPISBAIJ" 1078a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1079a30f8f8cSSatish Balay { 1080a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1081a30f8f8cSSatish Balay int ierr; 1082a30f8f8cSSatish Balay 1083a30f8f8cSSatish Balay PetscFunctionBegin; 1084a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1085a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1086a30f8f8cSSatish Balay PetscFunctionReturn(0); 1087a30f8f8cSSatish Balay } 1088a30f8f8cSSatish Balay 1089a30f8f8cSSatish Balay #undef __FUNC__ 1090b0a32e0cSBarry Smith #define __FUNC__ "MatGetInfo_MPISBAIJ" 1091a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1092a30f8f8cSSatish Balay { 1093a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1094a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1095a30f8f8cSSatish Balay int ierr; 1096a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1097a30f8f8cSSatish Balay 1098a30f8f8cSSatish Balay PetscFunctionBegin; 1099a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1100a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1101a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1102a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1103a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1104a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1105a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1106a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1107a30f8f8cSSatish Balay info->nz_used = isend[0]; 1108a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1109a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1110a30f8f8cSSatish Balay info->memory = isend[3]; 1111a30f8f8cSSatish Balay info->mallocs = isend[4]; 1112a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1113a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1114a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1115a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1116a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1117a30f8f8cSSatish Balay info->memory = irecv[3]; 1118a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1119a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1120a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1121a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1122a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1123a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1124a30f8f8cSSatish Balay info->memory = irecv[3]; 1125a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1126a30f8f8cSSatish Balay } else { 112729bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 1128a30f8f8cSSatish Balay } 1129b5df2d14SHong Zhang info->rows_global = (double)A->M; 1130b5df2d14SHong Zhang info->columns_global = (double)A->N; 1131b5df2d14SHong Zhang info->rows_local = (double)A->m; 1132b5df2d14SHong Zhang info->columns_local = (double)A->N; 1133a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1134a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1135a30f8f8cSSatish Balay info->factor_mallocs = 0; 1136a30f8f8cSSatish Balay PetscFunctionReturn(0); 1137a30f8f8cSSatish Balay } 1138a30f8f8cSSatish Balay 1139a30f8f8cSSatish Balay #undef __FUNC__ 1140b0a32e0cSBarry Smith #define __FUNC__ "MatSetOption_MPISBAIJ" 1141a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1142a30f8f8cSSatish Balay { 1143a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1144a30f8f8cSSatish Balay int ierr; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay PetscFunctionBegin; 1147a30f8f8cSSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 1148a30f8f8cSSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 1149a30f8f8cSSatish Balay op == MAT_COLUMNS_UNSORTED || 1150a30f8f8cSSatish Balay op == MAT_COLUMNS_SORTED || 1151a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 1152a30f8f8cSSatish Balay op == MAT_KEEP_ZEROED_ROWS || 1153a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 1154a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1155a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1156a30f8f8cSSatish Balay } else if (op == MAT_ROW_ORIENTED) { 1157a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1158a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1159a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1160a30f8f8cSSatish Balay } else if (op == MAT_ROWS_SORTED || 1161a30f8f8cSSatish Balay op == MAT_ROWS_UNSORTED || 1162a30f8f8cSSatish Balay op == MAT_SYMMETRIC || 1163a30f8f8cSSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1164a30f8f8cSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1165a30f8f8cSSatish Balay op == MAT_USE_HASH_TABLE) { 1166b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1167a30f8f8cSSatish Balay } else if (op == MAT_COLUMN_ORIENTED) { 1168a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1169a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1170a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1171a30f8f8cSSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 1172a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1173a30f8f8cSSatish Balay } else if (op == MAT_NO_NEW_DIAGONALS) { 117429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1175a30f8f8cSSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1176a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1177a30f8f8cSSatish Balay } else { 117829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1179a30f8f8cSSatish Balay } 1180a30f8f8cSSatish Balay PetscFunctionReturn(0); 1181a30f8f8cSSatish Balay } 1182a30f8f8cSSatish Balay 1183a30f8f8cSSatish Balay #undef __FUNC__ 1184b0a32e0cSBarry Smith #define __FUNC__ "MatTranspose_MPISBAIJ(" 1185a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1186a30f8f8cSSatish Balay { 1187a30f8f8cSSatish Balay PetscFunctionBegin; 118829bbc08cSBarry Smith SETERRQ(1,"Matrix is symmetric. MatTranspose() should not be called"); 118996e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay 1192a30f8f8cSSatish Balay #undef __FUNC__ 1193b0a32e0cSBarry Smith #define __FUNC__ "MatDiagonalScale_MPISBAIJ" 1194a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1195a30f8f8cSSatish Balay { 1196a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1197a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1198a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1199a30f8f8cSSatish Balay 1200a30f8f8cSSatish Balay PetscFunctionBegin; 1201a30f8f8cSSatish Balay if (ll != rr) { 120229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1203a30f8f8cSSatish Balay } 1204a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1205a30f8f8cSSatish Balay if (rr) { 1206a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 120729bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 1208a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1209a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay /*} if (ll) { */ 1211a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 121229bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1213a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1214a30f8f8cSSatish Balay /* } */ 1215a30f8f8cSSatish Balay /* scale the diagonal block */ 1216a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1217a30f8f8cSSatish Balay 1218a30f8f8cSSatish Balay /* if (rr) { */ 1219a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1220a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1221a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1222a30f8f8cSSatish Balay } 1223a30f8f8cSSatish Balay 1224a30f8f8cSSatish Balay PetscFunctionReturn(0); 1225a30f8f8cSSatish Balay } 1226a30f8f8cSSatish Balay 1227a30f8f8cSSatish Balay #undef __FUNC__ 1228b0a32e0cSBarry Smith #define __FUNC__ "MatZeroRows_MPISBAIJ" 1229a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1230a30f8f8cSSatish Balay { 1231a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1232a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 123335d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 1234a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1235a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1236a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1237a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1238a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1239a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1240a30f8f8cSSatish Balay IS istmp; 124135d8aa7fSBarry Smith PetscTruth found; 1242a30f8f8cSSatish Balay 1243a30f8f8cSSatish Balay PetscFunctionBegin; 1244a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1245a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1246a30f8f8cSSatish Balay 1247a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 124882502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1250a30f8f8cSSatish Balay procs = nprocs + size; 1251b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 1252a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1253a30f8f8cSSatish Balay idx = rows[i]; 125435d8aa7fSBarry Smith found = PETSC_FALSE; 1255a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1256a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 125735d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay } 126029bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 1261a30f8f8cSSatish Balay } 1262a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1263a30f8f8cSSatish Balay 1264a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 126582502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 1266a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1267a30f8f8cSSatish Balay nmax = work[rank]; 1268a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1269a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1270a30f8f8cSSatish Balay 1271a30f8f8cSSatish Balay /* post receives: */ 1272b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1273b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 1274a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1275a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1276a30f8f8cSSatish Balay } 1277a30f8f8cSSatish Balay 1278a30f8f8cSSatish Balay /* do sends: 1279a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1280a30f8f8cSSatish Balay the ith processor 1281a30f8f8cSSatish Balay */ 1282b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1283b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1284b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 1285a30f8f8cSSatish Balay starts[0] = 0; 1286a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1287a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1288a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1289a30f8f8cSSatish Balay } 1290a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1291a30f8f8cSSatish Balay 1292a30f8f8cSSatish Balay starts[0] = 0; 1293a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1294a30f8f8cSSatish Balay count = 0; 1295a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1296a30f8f8cSSatish Balay if (procs[i]) { 1297a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1298a30f8f8cSSatish Balay } 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay 1302a30f8f8cSSatish Balay base = owners[rank]*bs; 1303a30f8f8cSSatish Balay 1304a30f8f8cSSatish Balay /* wait on receives */ 1305b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay source = lens + nrecvs; 1307a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1308a30f8f8cSSatish Balay while (count) { 1309a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1310a30f8f8cSSatish Balay /* unpack receives into our local space */ 1311a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1312a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1313a30f8f8cSSatish Balay lens[imdex] = n; 1314a30f8f8cSSatish Balay slen += n; 1315a30f8f8cSSatish Balay count--; 1316a30f8f8cSSatish Balay } 1317a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay 1319a30f8f8cSSatish Balay /* move the data into the send scatter */ 1320b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 1321a30f8f8cSSatish Balay count = 0; 1322a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1323a30f8f8cSSatish Balay values = rvalues + i*nmax; 1324a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1325a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1326a30f8f8cSSatish Balay } 1327a30f8f8cSSatish Balay } 1328a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1329a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1330a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1331a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1332a30f8f8cSSatish Balay 1333a30f8f8cSSatish Balay /* actually zap the local rows */ 1334a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1335b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay /* 1338a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1339a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1340a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1341a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1342a30f8f8cSSatish Balay 1343a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1344a30f8f8cSSatish Balay */ 1345a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1346ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1348a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1349a30f8f8cSSatish Balay } else if (diag) { 1350a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1351a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 135229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1353a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1354a30f8f8cSSatish Balay } 1355a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1356a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1357a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1358a30f8f8cSSatish Balay } 1359a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1360a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1361a30f8f8cSSatish Balay } else { 1362a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1363a30f8f8cSSatish Balay } 1364a30f8f8cSSatish Balay 1365a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1366a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay 1368a30f8f8cSSatish Balay /* wait on sends */ 1369a30f8f8cSSatish Balay if (nsends) { 137082502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1371a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1372a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1373a30f8f8cSSatish Balay } 1374a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1375a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1376a30f8f8cSSatish Balay 1377a30f8f8cSSatish Balay PetscFunctionReturn(0); 1378a30f8f8cSSatish Balay } 1379a30f8f8cSSatish Balay 1380a30f8f8cSSatish Balay #undef __FUNC__ 1381b0a32e0cSBarry Smith #define __FUNC__ "MatPrintHelp_MPISBAIJ" 1382a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1383a30f8f8cSSatish Balay { 1384a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1385a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1386a30f8f8cSSatish Balay static int called = 0; 1387a30f8f8cSSatish Balay int ierr; 1388a30f8f8cSSatish Balay 1389a30f8f8cSSatish Balay PetscFunctionBegin; 1390a30f8f8cSSatish Balay if (!a->rank) { 1391a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1392a30f8f8cSSatish Balay } 1393a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1394a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1395a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1396a30f8f8cSSatish Balay PetscFunctionReturn(0); 1397a30f8f8cSSatish Balay } 1398a30f8f8cSSatish Balay 1399a30f8f8cSSatish Balay #undef __FUNC__ 1400b0a32e0cSBarry Smith #define __FUNC__ "MatSetUnfactored_MPISBAIJ" 1401a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1402a30f8f8cSSatish Balay { 1403f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1404a30f8f8cSSatish Balay int ierr; 1405a30f8f8cSSatish Balay 1406a30f8f8cSSatish Balay PetscFunctionBegin; 1407a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1408a30f8f8cSSatish Balay PetscFunctionReturn(0); 1409a30f8f8cSSatish Balay } 1410a30f8f8cSSatish Balay 1411a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1412a30f8f8cSSatish Balay 1413a30f8f8cSSatish Balay #undef __FUNC__ 1414b0a32e0cSBarry Smith #define __FUNC__ "MatEqual_MPISBAIJ" 1415a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1416a30f8f8cSSatish Balay { 1417a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1418a30f8f8cSSatish Balay Mat a,b,c,d; 1419a30f8f8cSSatish Balay PetscTruth flg; 1420a30f8f8cSSatish Balay int ierr; 1421a30f8f8cSSatish Balay 1422a30f8f8cSSatish Balay PetscFunctionBegin; 1423b5df2d14SHong Zhang ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg);CHKERRQ(ierr); 1424b5df2d14SHong Zhang if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1425a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1426a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1429a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1430a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1431a30f8f8cSSatish Balay } 1432a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1433a30f8f8cSSatish Balay PetscFunctionReturn(0); 1434a30f8f8cSSatish Balay } 1435a30f8f8cSSatish Balay 1436273d9f13SBarry Smith #undef __FUNC__ 1437b0a32e0cSBarry Smith #define __FUNC__ "MatSetUpPreallocation_MPISBAIJ" 1438273d9f13SBarry Smith int MatSetUpPreallocation_MPISBAIJ(Mat A) 1439273d9f13SBarry Smith { 1440273d9f13SBarry Smith int ierr; 1441273d9f13SBarry Smith 1442273d9f13SBarry Smith PetscFunctionBegin; 1443273d9f13SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1444273d9f13SBarry Smith PetscFunctionReturn(0); 1445273d9f13SBarry Smith } 1446a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1447a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1448a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1449a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1450a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1451a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1452a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1453a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1454a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 1457a30f8f8cSSatish Balay 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1463a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1464a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1465a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1466a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1467a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1468a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1469a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1472a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1473a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477a30f8f8cSSatish Balay 0, 1478273d9f13SBarry Smith MatSetUpPreallocation_MPISBAIJ, 1479b5df2d14SHong Zhang 0, 1480a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1486a30f8f8cSSatish Balay 0, 1487a30f8f8cSSatish Balay 0, 1488a30f8f8cSSatish Balay 0, 1489a30f8f8cSSatish Balay 0, 1490a30f8f8cSSatish Balay 0, 1491a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1492a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1493a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1496a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay 0, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 151324d5174aSHong Zhang MatGetMaps_Petsc, 151424d5174aSHong Zhang 0, 151524d5174aSHong Zhang 0, 151624d5174aSHong Zhang 0, 151724d5174aSHong Zhang 0, 151824d5174aSHong Zhang 0, 151924d5174aSHong Zhang 0, 152024d5174aSHong Zhang MatGetRowMax_MPISBAIJ}; 1521a30f8f8cSSatish Balay 1522a30f8f8cSSatish Balay 1523a30f8f8cSSatish Balay EXTERN_C_BEGIN 1524a30f8f8cSSatish Balay #undef __FUNC__ 1525b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPISBAIJ" 1526a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1527a30f8f8cSSatish Balay { 1528a30f8f8cSSatish Balay PetscFunctionBegin; 1529a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1530a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1531a30f8f8cSSatish Balay PetscFunctionReturn(0); 1532a30f8f8cSSatish Balay } 1533a30f8f8cSSatish Balay EXTERN_C_END 1534a30f8f8cSSatish Balay 1535273d9f13SBarry Smith EXTERN_C_BEGIN 1536a30f8f8cSSatish Balay #undef __FUNC__ 1537b0a32e0cSBarry Smith #define __FUNC__ "MatCreate_MPISBAIJ" 1538b5df2d14SHong Zhang int MatCreate_MPISBAIJ(Mat B) 1539b5df2d14SHong Zhang { 1540b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1541ca54ac64SHong Zhang int ierr; 1542b5df2d14SHong Zhang PetscTruth flg; 1543b5df2d14SHong Zhang 1544b5df2d14SHong Zhang PetscFunctionBegin; 1545b5df2d14SHong Zhang 1546b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1547b0a32e0cSBarry Smith B->data = (void*)b; 1548b5df2d14SHong Zhang ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1549b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1550b5df2d14SHong Zhang 1551b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1552b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1553b5df2d14SHong Zhang B->mapping = 0; 1554b5df2d14SHong Zhang B->factor = 0; 1555b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1556b5df2d14SHong Zhang 1557b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 1558b5df2d14SHong Zhang ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1559b5df2d14SHong Zhang ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1560b5df2d14SHong Zhang 1561b5df2d14SHong Zhang /* build local table of row and column ownerships */ 156282502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1563273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1564273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1565b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1566b5df2d14SHong Zhang 1567b5df2d14SHong Zhang /* build cache for off array entries formed */ 1568b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1569b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1570b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1571b5df2d14SHong Zhang b->garray = PETSC_NULL; 1572b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1573b5df2d14SHong Zhang 1574*f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 1575b5df2d14SHong Zhang /* stuff for MatSetValues_XXX in single precision */ 1576b5df2d14SHong Zhang b->lensetvalues = 0; 1577b5df2d14SHong Zhang b->setvaluescopy = PETSC_NULL; 1578b5df2d14SHong Zhang #endif 1579b5df2d14SHong Zhang 1580b5df2d14SHong Zhang /* stuff used in block assembly */ 1581b5df2d14SHong Zhang b->barray = 0; 1582b5df2d14SHong Zhang 1583b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1584b5df2d14SHong Zhang b->lvec = 0; 1585b5df2d14SHong Zhang b->Mvctx = 0; 1586b5df2d14SHong Zhang 1587b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1588b5df2d14SHong Zhang b->rowindices = 0; 1589b5df2d14SHong Zhang b->rowvalues = 0; 1590b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1591b5df2d14SHong Zhang 1592b5df2d14SHong Zhang /* hash table stuff */ 1593b5df2d14SHong Zhang b->ht = 0; 1594b5df2d14SHong Zhang b->hd = 0; 1595b5df2d14SHong Zhang b->ht_size = 0; 1596b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1597b5df2d14SHong Zhang b->ht_fact = 0; 1598b5df2d14SHong Zhang b->ht_total_ct = 0; 1599b5df2d14SHong Zhang b->ht_insert_ct = 0; 1600b5df2d14SHong Zhang 1601b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1602b5df2d14SHong Zhang if (flg) { 1603b5df2d14SHong Zhang double fact = 1.39; 1604b5df2d14SHong Zhang ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscOptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1606b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1607b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1608b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1609b5df2d14SHong Zhang } 1610b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1611b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1612b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1613b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1614b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1615b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1616b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1617b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1618b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1619b5df2d14SHong Zhang PetscFunctionReturn(0); 1620b5df2d14SHong Zhang } 1621273d9f13SBarry Smith EXTERN_C_END 1622b5df2d14SHong Zhang 1623b5df2d14SHong Zhang #undef __FUNC__ 1624b0a32e0cSBarry Smith #define __FUNC__ "MatMPISBAIJSetPreallocation" 1625b5df2d14SHong Zhang /*@C 1626b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1627b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1628b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1629b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1630b5df2d14SHong Zhang 1631b5df2d14SHong Zhang Collective on Mat 1632b5df2d14SHong Zhang 1633b5df2d14SHong Zhang Input Parameters: 1634b5df2d14SHong Zhang + A - the matrix 1635b5df2d14SHong Zhang . bs - size of blockk 1636b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1637b5df2d14SHong Zhang submatrix (same for all local rows) 1638b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 1639b5df2d14SHong Zhang of the in diagonal portion of the local (possibly different for each block 1640b5df2d14SHong Zhang row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1641b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1642b5df2d14SHong Zhang submatrix (same for all local rows). 1643b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1644b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1645b5df2d14SHong Zhang each block row) or PETSC_NULL. 1646b5df2d14SHong Zhang 1647b5df2d14SHong Zhang 1648b5df2d14SHong Zhang Options Database Keys: 1649b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1650b5df2d14SHong Zhang block calculations (much slower) 1651b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1652b5df2d14SHong Zhang 1653b5df2d14SHong Zhang Notes: 1654b5df2d14SHong Zhang 1655b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1656b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1657b5df2d14SHong Zhang 1658b5df2d14SHong Zhang Storage Information: 1659b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1660b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1661b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1662b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1663b5df2d14SHong Zhang 1664b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1665b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1666b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1667b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1668b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1669b5df2d14SHong Zhang 1670b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1671b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1672b5df2d14SHong Zhang 1673b5df2d14SHong Zhang .vb 1674b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1675b5df2d14SHong Zhang ------------------- 1676b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1677b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1678b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1679b5df2d14SHong Zhang ------------------- 1680b5df2d14SHong Zhang .ve 1681b5df2d14SHong Zhang 1682b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1683b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 1684b5df2d14SHong Zhang o (off-diagonal) submatrix. Note that the d and the o submatrices are 1685b5df2d14SHong Zhang stored simply in the MATSEQBAIJ format for compressed row storage. 1686b5df2d14SHong Zhang 1687b5df2d14SHong Zhang Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1688b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1689b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1690b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1691b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1692b5df2d14SHong Zhang matrices. 1693b5df2d14SHong Zhang 1694b5df2d14SHong Zhang Level: intermediate 1695b5df2d14SHong Zhang 1696b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1697b5df2d14SHong Zhang 1698b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1699b5df2d14SHong Zhang @*/ 1700b5df2d14SHong Zhang 1701b5df2d14SHong Zhang int MatMPISBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1702b5df2d14SHong Zhang { 1703b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1704ca54ac64SHong Zhang int ierr,i,mbs,Mbs=PETSC_DECIDE; 1705273d9f13SBarry Smith PetscTruth flg2; 1706b5df2d14SHong Zhang 1707b5df2d14SHong Zhang PetscFunctionBegin; 1708273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPISBAIJ,&flg2);CHKERRQ(ierr); 1709273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1710273d9f13SBarry Smith 1711b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1712b5df2d14SHong Zhang 1713b5df2d14SHong Zhang if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1714b5df2d14SHong Zhang if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than -2: value %d",d_nz); 1715b5df2d14SHong Zhang if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than -2: value %d",o_nz); 1716b5df2d14SHong Zhang if (d_nnz) { 1717b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1718b5df2d14SHong Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1719b5df2d14SHong Zhang } 1720b5df2d14SHong Zhang } 1721b5df2d14SHong Zhang if (o_nnz) { 1722b5df2d14SHong Zhang for (i=0; i<B->m/bs; i++) { 1723b5df2d14SHong Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1724b5df2d14SHong Zhang } 1725b5df2d14SHong Zhang } 172619138431SHong Zhang B->preallocated = PETSC_TRUE; 172719138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 172819138431SHong Zhang ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 172919138431SHong Zhang ierr = MapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 173019138431SHong Zhang ierr = MapCreateMPI(B->comm,B->m,B->M,&B->cmap);CHKERRQ(ierr); 1731b5df2d14SHong Zhang 1732b5df2d14SHong Zhang b = (Mat_MPISBAIJ*)B->data; 1733b5df2d14SHong Zhang mbs = B->m/bs; 1734b5df2d14SHong Zhang Mbs = B->M/bs; 1735b5df2d14SHong Zhang if (mbs*bs != B->m) { 173619138431SHong Zhang SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %d must be divisible by blocksize %d",B->m,bs); 1737b5df2d14SHong Zhang } 1738b5df2d14SHong Zhang 1739b5df2d14SHong Zhang b->bs = bs; 1740b5df2d14SHong Zhang b->bs2 = bs*bs; 1741b5df2d14SHong Zhang b->mbs = mbs; 1742b5df2d14SHong Zhang b->nbs = mbs; 1743b5df2d14SHong Zhang b->Mbs = Mbs; 1744b5df2d14SHong Zhang b->Nbs = Mbs; 1745b5df2d14SHong Zhang 1746b5df2d14SHong Zhang ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 1747b5df2d14SHong Zhang b->rowners[0] = 0; 1748b5df2d14SHong Zhang for (i=2; i<=b->size; i++) { 1749b5df2d14SHong Zhang b->rowners[i] += b->rowners[i-1]; 1750b5df2d14SHong Zhang } 1751b5df2d14SHong Zhang b->rstart = b->rowners[b->rank]; 1752b5df2d14SHong Zhang b->rend = b->rowners[b->rank+1]; 1753b5df2d14SHong Zhang b->cstart = b->rstart; 1754b5df2d14SHong Zhang b->cend = b->rend; 1755b5df2d14SHong Zhang for (i=0; i<=b->size; i++) { 1756b5df2d14SHong Zhang b->rowners_bs[i] = b->rowners[i]*bs; 1757b5df2d14SHong Zhang } 1758b5df2d14SHong Zhang b->rstart_bs = b-> rstart*bs; 1759b5df2d14SHong Zhang b->rend_bs = b->rend*bs; 1760b5df2d14SHong Zhang 1761b5df2d14SHong Zhang b->cstart_bs = b->cstart*bs; 1762b5df2d14SHong Zhang b->cend_bs = b->cend*bs; 1763b5df2d14SHong Zhang 1764b5df2d14SHong Zhang 1765b5df2d14SHong Zhang if (d_nz == PETSC_DEFAULT) d_nz = 5; 1766b5df2d14SHong Zhang ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,B->m,B->m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1767b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 1768b5df2d14SHong Zhang if (o_nz == PETSC_DEFAULT) o_nz = 0; 1769b5df2d14SHong Zhang ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1770b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 1771b5df2d14SHong Zhang 1772b5df2d14SHong Zhang /* build cache for off array entries formed */ 1773b5df2d14SHong Zhang ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1774b5df2d14SHong Zhang 1775b5df2d14SHong Zhang PetscFunctionReturn(0); 1776b5df2d14SHong Zhang } 1777b5df2d14SHong Zhang 1778b5df2d14SHong Zhang #undef __FUNC__ 1779b0a32e0cSBarry Smith #define __FUNC__ "MatCreateMPISBAIJ" 1780a30f8f8cSSatish Balay /*@C 1781a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1782a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1783a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1784a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1785a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1786a30f8f8cSSatish Balay 1787a30f8f8cSSatish Balay Collective on MPI_Comm 1788a30f8f8cSSatish Balay 1789a30f8f8cSSatish Balay Input Parameters: 1790a30f8f8cSSatish Balay + comm - MPI communicator 1791a30f8f8cSSatish Balay . bs - size of blockk 1792a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1793a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1794a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1795a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1796a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1797a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1798a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1799a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1800a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1801a30f8f8cSSatish Balay submatrix (same for all local rows) 1802a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1803a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1804a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1805a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1806a30f8f8cSSatish Balay submatrix (same for all local rows). 1807a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1808a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1809a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1810a30f8f8cSSatish Balay 1811a30f8f8cSSatish Balay Output Parameter: 1812a30f8f8cSSatish Balay . A - the matrix 1813a30f8f8cSSatish Balay 1814a30f8f8cSSatish Balay Options Database Keys: 1815a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1816a30f8f8cSSatish Balay block calculations (much slower) 1817a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1818a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1819a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1820a30f8f8cSSatish Balay 1821a30f8f8cSSatish Balay Notes: 1822a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1823a30f8f8cSSatish Balay (possibly both). 1824a30f8f8cSSatish Balay 1825a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1826a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1827a30f8f8cSSatish Balay 1828a30f8f8cSSatish Balay Storage Information: 1829a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1830a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1831a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1832a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1833a30f8f8cSSatish Balay 1834a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1835a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1836a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1837a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1838a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1839a30f8f8cSSatish Balay 1840a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1841a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1842a30f8f8cSSatish Balay 1843a30f8f8cSSatish Balay .vb 1844a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1845a30f8f8cSSatish Balay ------------------- 1846a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1847a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1848a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1849a30f8f8cSSatish Balay ------------------- 1850a30f8f8cSSatish Balay .ve 1851a30f8f8cSSatish Balay 1852a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1853a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1854a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1855a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1856a30f8f8cSSatish Balay 1857a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1858a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1859a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1860a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1861a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1862a30f8f8cSSatish Balay matrices. 1863a30f8f8cSSatish Balay 1864a30f8f8cSSatish Balay Level: intermediate 1865a30f8f8cSSatish Balay 1866a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1867a30f8f8cSSatish Balay 1868a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1869a30f8f8cSSatish Balay @*/ 1870a30f8f8cSSatish Balay 1871a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1872a30f8f8cSSatish Balay { 1873273d9f13SBarry Smith int ierr,size; 1874a30f8f8cSSatish Balay 1875a30f8f8cSSatish Balay PetscFunctionBegin; 1876b5df2d14SHong Zhang ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1877273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1878273d9f13SBarry Smith if (size > 1) { 1879b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 1880b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1881273d9f13SBarry Smith } else { 1882273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1883273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1884273d9f13SBarry Smith } 1885a30f8f8cSSatish Balay PetscFunctionReturn(0); 1886a30f8f8cSSatish Balay } 1887a30f8f8cSSatish Balay 1888a30f8f8cSSatish Balay 1889a30f8f8cSSatish Balay #undef __FUNC__ 1890b0a32e0cSBarry Smith #define __FUNC__ "MatDuplicate_MPISBAIJ" 1891a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1892a30f8f8cSSatish Balay { 1893a30f8f8cSSatish Balay Mat mat; 1894a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1895a30f8f8cSSatish Balay int ierr,len=0; 1896a30f8f8cSSatish Balay 1897a30f8f8cSSatish Balay PetscFunctionBegin; 1898a30f8f8cSSatish Balay *newmat = 0; 1899b5df2d14SHong Zhang ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1900b5df2d14SHong Zhang ierr = MatSetType(mat,MATMPISBAIJ);CHKERRQ(ierr); 1901273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1902b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 1903a30f8f8cSSatish Balay a->bs = oldmat->bs; 1904a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1905a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1906a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1907a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1908a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1909a30f8f8cSSatish Balay 1910a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1911a30f8f8cSSatish Balay a->rend = oldmat->rend; 1912a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1913a30f8f8cSSatish Balay a->cend = oldmat->cend; 1914a30f8f8cSSatish Balay a->size = oldmat->size; 1915a30f8f8cSSatish Balay a->rank = oldmat->rank; 1916a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1917a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1918a30f8f8cSSatish Balay a->rowindices = 0; 1919a30f8f8cSSatish Balay a->rowvalues = 0; 1920a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1921a30f8f8cSSatish Balay a->barray = 0; 1922a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1923a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1924a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1925a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay /* hash table stuff */ 1928a30f8f8cSSatish Balay a->ht = 0; 1929a30f8f8cSSatish Balay a->hd = 0; 1930a30f8f8cSSatish Balay a->ht_size = 0; 1931a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1932a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1933a30f8f8cSSatish Balay a->ht_total_ct = 0; 1934a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1935a30f8f8cSSatish Balay 193682502324SSatish Balay ierr = PetscMalloc(3*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1937b0a32e0cSBarry Smith PetscLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1938a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1939a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1940a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1941a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1942a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1943a30f8f8cSSatish Balay if (oldmat->colmap) { 1944a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1945a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1946a30f8f8cSSatish Balay #else 194782502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 1948b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1949a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1950a30f8f8cSSatish Balay #endif 1951a30f8f8cSSatish Balay } else a->colmap = 0; 1952a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 195382502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 1954b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 1955a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1956a30f8f8cSSatish Balay } else a->garray = 0; 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1959b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 1960a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1961a30f8f8cSSatish Balay 1962b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 1963a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1964b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1965a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1966b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 1967b0a32e0cSBarry Smith ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1968a30f8f8cSSatish Balay *newmat = mat; 1969a30f8f8cSSatish Balay PetscFunctionReturn(0); 1970a30f8f8cSSatish Balay } 1971a30f8f8cSSatish Balay 1972a30f8f8cSSatish Balay #include "petscsys.h" 1973a30f8f8cSSatish Balay 1974273d9f13SBarry Smith EXTERN_C_BEGIN 1975a30f8f8cSSatish Balay #undef __FUNC__ 1976b0a32e0cSBarry Smith #define __FUNC__ "MatLoad_MPISBAIJ" 1977b0a32e0cSBarry Smith int MatLoad_MPISBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 1978a30f8f8cSSatish Balay { 1979a30f8f8cSSatish Balay Mat A; 1980a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1981a30f8f8cSSatish Balay Scalar *vals,*buf; 1982a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1983a30f8f8cSSatish Balay MPI_Status status; 1984a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1985a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1986a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1987a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1988a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1989a30f8f8cSSatish Balay 1990a30f8f8cSSatish Balay PetscFunctionBegin; 1991b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1994a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1995a30f8f8cSSatish Balay if (!rank) { 1996b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1997a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 199829bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1999a30f8f8cSSatish Balay if (header[3] < 0) { 200029bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2001a30f8f8cSSatish Balay } 2002a30f8f8cSSatish Balay } 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2005a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2006a30f8f8cSSatish Balay 200729bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2008a30f8f8cSSatish Balay 2009a30f8f8cSSatish Balay /* 2010a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2011a30f8f8cSSatish Balay divisible by the blocksize 2012a30f8f8cSSatish Balay */ 2013a30f8f8cSSatish Balay Mbs = M/bs; 2014a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2015a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2016a30f8f8cSSatish Balay else Mbs++; 2017a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2018b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2019a30f8f8cSSatish Balay } 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay /* determine ownership of all rows */ 2022a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2023a30f8f8cSSatish Balay m = mbs*bs; 2024b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2025a30f8f8cSSatish Balay browners = rowners + size + 1; 2026a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2027a30f8f8cSSatish Balay rowners[0] = 0; 2028a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2029a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2030a30f8f8cSSatish Balay rstart = rowners[rank]; 2031a30f8f8cSSatish Balay rend = rowners[rank+1]; 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 203482502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 2035a30f8f8cSSatish Balay if (!rank) { 2036b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2037a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2038a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 203982502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2040a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2041a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2042a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2043a30f8f8cSSatish Balay } else { 2044a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2045a30f8f8cSSatish Balay } 2046a30f8f8cSSatish Balay 20470222edb1SHong Zhang if (!rank) { /* procs[0] */ 2048a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 204982502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2050a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2051a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2052a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2053a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2054a30f8f8cSSatish Balay } 2055a30f8f8cSSatish Balay } 2056a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2057a30f8f8cSSatish Balay 2058a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2059a30f8f8cSSatish Balay maxnz = 0; 2060a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2061a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2062a30f8f8cSSatish Balay } 206382502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 2064a30f8f8cSSatish Balay 2065a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2066a30f8f8cSSatish Balay nz = procsnz[0]; 206782502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2068a30f8f8cSSatish Balay mycols = ibuf; 2069a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2070a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2071a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2072a30f8f8cSSatish Balay 2073a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2074a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2075a30f8f8cSSatish Balay nz = procsnz[i]; 2076a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2077a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2078a30f8f8cSSatish Balay } 2079a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2080a30f8f8cSSatish Balay if (size != 1) { 2081a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2082a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2083a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2084a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2085a30f8f8cSSatish Balay } 2086a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20870222edb1SHong Zhang } else { /* procs[i], i>0 */ 2088a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2089a30f8f8cSSatish Balay nz = 0; 2090a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2091a30f8f8cSSatish Balay nz += locrowlens[i]; 2092a30f8f8cSSatish Balay } 209382502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 2094a30f8f8cSSatish Balay mycols = ibuf; 2095a30f8f8cSSatish Balay /* receive message of column indices*/ 2096a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 209829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2099a30f8f8cSSatish Balay } 2100a30f8f8cSSatish Balay 2101a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 210282502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 210482502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2105a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2106a30f8f8cSSatish Balay masked1 = mask + Mbs; 2107a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2108a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2109a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2110a30f8f8cSSatish Balay dcount = 0; 2111a30f8f8cSSatish Balay odcount = 0; 2112a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2113a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2114a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21150222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2116a30f8f8cSSatish Balay if (!mask[tmp]) { 2117a30f8f8cSSatish Balay mask[tmp] = 1; 21180222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21190222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2120a30f8f8cSSatish Balay } 2121a30f8f8cSSatish Balay } 2122a30f8f8cSSatish Balay rowcount++; 2123a30f8f8cSSatish Balay } 2124a30f8f8cSSatish Balay 21250222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21260222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2127a30f8f8cSSatish Balay 2128a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2129a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2130a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2131a30f8f8cSSatish Balay } 2132a30f8f8cSSatish Balay 2133a30f8f8cSSatish Balay /* create our matrix */ 21347e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2135bfe19f1aSHong Zhang CHKERRQ(ierr); 2136a30f8f8cSSatish Balay A = *newmat; 2137273d9f13SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay 2139a30f8f8cSSatish Balay if (!rank) { 214082502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(Scalar),&buf);CHKERRQ(ierr); 2141a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2142a30f8f8cSSatish Balay nz = procsnz[0]; 2143a30f8f8cSSatish Balay vals = buf; 2144a30f8f8cSSatish Balay mycols = ibuf; 2145a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2146a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2147a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2148a30f8f8cSSatish Balay 2149a30f8f8cSSatish Balay /* insert into matrix */ 2150a30f8f8cSSatish Balay jj = rstart*bs; 2151a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21527e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay mycols += locrowlens[i]; 2154a30f8f8cSSatish Balay vals += locrowlens[i]; 2155a30f8f8cSSatish Balay jj++; 2156a30f8f8cSSatish Balay } 21577e06b45fSHong Zhang 2158a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2159a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2160a30f8f8cSSatish Balay nz = procsnz[i]; 2161a30f8f8cSSatish Balay vals = buf; 2162a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2163a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2164a30f8f8cSSatish Balay } 2165a30f8f8cSSatish Balay /* the last proc */ 2166a30f8f8cSSatish Balay if (size != 1){ 2167a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2168a30f8f8cSSatish Balay vals = buf; 2169a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2170a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2171a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2172a30f8f8cSSatish Balay } 2173a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21747e06b45fSHong Zhang 2175a30f8f8cSSatish Balay } else { 2176a30f8f8cSSatish Balay /* receive numeric values */ 217782502324SSatish Balay ierr = PetscMalloc(nz*sizeof(Scalar),&buf);CHKERRQ(ierr); 2178a30f8f8cSSatish Balay 2179a30f8f8cSSatish Balay /* receive message of values*/ 2180a30f8f8cSSatish Balay vals = buf; 2181a30f8f8cSSatish Balay mycols = ibuf; 2182a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2183a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 218429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2185a30f8f8cSSatish Balay 2186a30f8f8cSSatish Balay /* insert into matrix */ 2187a30f8f8cSSatish Balay jj = rstart*bs; 2188a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2189a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2190a30f8f8cSSatish Balay mycols += locrowlens[i]; 2191a30f8f8cSSatish Balay vals += locrowlens[i]; 2192a30f8f8cSSatish Balay jj++; 2193a30f8f8cSSatish Balay } 2194a30f8f8cSSatish Balay } 21957e06b45fSHong Zhang 2196a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2199a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2200a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2201a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2202a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2203a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay PetscFunctionReturn(0); 2205a30f8f8cSSatish Balay } 2206273d9f13SBarry Smith EXTERN_C_END 2207a30f8f8cSSatish Balay 2208a30f8f8cSSatish Balay #undef __FUNC__ 2209b0a32e0cSBarry Smith #define __FUNC__ "MatMPISBAIJSetHashTableFactor" 2210a30f8f8cSSatish Balay /*@ 2211a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2212a30f8f8cSSatish Balay 2213a30f8f8cSSatish Balay Input Parameters: 2214a30f8f8cSSatish Balay . mat - the matrix 2215a30f8f8cSSatish Balay . fact - factor 2216a30f8f8cSSatish Balay 2217a30f8f8cSSatish Balay Collective on Mat 2218a30f8f8cSSatish Balay 2219a30f8f8cSSatish Balay Level: advanced 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay Notes: 2222a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2223a30f8f8cSSatish Balay 2224a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2225a30f8f8cSSatish Balay 2226a30f8f8cSSatish Balay .seealso: MatSetOption() 2227a30f8f8cSSatish Balay @*/ 2228a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2229a30f8f8cSSatish Balay { 2230a30f8f8cSSatish Balay PetscFunctionBegin; 223129bbc08cSBarry Smith SETERRQ(1,"Function not yet written for SBAIJ format"); 223296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2233a30f8f8cSSatish Balay } 223424d5174aSHong Zhang 223524d5174aSHong Zhang #undef __FUNC__ 2236b0a32e0cSBarry Smith #define __FUNC__ "MatGetRowMax_MPISBAIJ" 223724d5174aSHong Zhang int MatGetRowMax_MPISBAIJ(Mat A,Vec v) 223824d5174aSHong Zhang { 223924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2240f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2241ca54ac64SHong Zhang PetscReal atmp; 2242ca54ac64SHong Zhang double *work,*svalues,*rvalues; 2243ca54ac64SHong Zhang int ierr,i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 2244154bba0bSHong Zhang int rank,size,*rowners_bs,dest,count,source; 2245ca54ac64SHong Zhang Scalar *ba,*va; 2246f4c0e9e4SHong Zhang MPI_Status stat; 224724d5174aSHong Zhang 224824d5174aSHong Zhang PetscFunctionBegin; 2249d36791b2SHong Zhang ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 2250f4c0e9e4SHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2251f4c0e9e4SHong Zhang 2252ac355199SBarry Smith ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 2253ac355199SBarry Smith ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 2254f4c0e9e4SHong Zhang 2255f4c0e9e4SHong Zhang bs = a->bs; 2256f4c0e9e4SHong Zhang mbs = a->mbs; 2257f4c0e9e4SHong Zhang Mbs = a->Mbs; 2258f4c0e9e4SHong Zhang ba = b->a; 2259f4c0e9e4SHong Zhang bi = b->i; 2260f4c0e9e4SHong Zhang bj = b->j; 2261ca54ac64SHong Zhang /* 2262f4c0e9e4SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] M: %d, bs: %d, mbs: %d \n",rank,bs*Mbs,bs,mbs); 2263f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2264ca54ac64SHong Zhang */ 2265f4c0e9e4SHong Zhang 2266f4c0e9e4SHong Zhang /* find ownerships */ 2267f4c0e9e4SHong Zhang rowners_bs = a->rowners_bs; 2268f4c0e9e4SHong Zhang /* 226904d41228SHong Zhang if (!rank){ 227004d41228SHong Zhang for (i=0; i<size+1; i++) PetscPrintf(PETSC_COMM_SELF," rowners_bs[%d]: %d\n",i,rowners_bs[i]); 2271f4c0e9e4SHong Zhang } 2272f4c0e9e4SHong Zhang */ 2273f4c0e9e4SHong Zhang 2274f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 227582502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2276ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2277f4c0e9e4SHong Zhang 2278f4c0e9e4SHong Zhang /* row_max for B */ 2279b8475685SHong Zhang if (rank != size-1){ 2280f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2281f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2282f4c0e9e4SHong Zhang brow = bs*i; 2283f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2284f4c0e9e4SHong Zhang bcol = bs*(*bj); 2285f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2286ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 228704d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2288ca54ac64SHong Zhang /* PetscPrintf(PETSC_COMM_SELF,"[%d], col: %d\n",rank,col); */ 2289f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2290f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2291ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2292f4c0e9e4SHong Zhang /* printf("val[%d,%d]: %g\n",row,col,atmp); */ 2293ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2294f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2295f4c0e9e4SHong Zhang } 2296f4c0e9e4SHong Zhang } 2297f4c0e9e4SHong Zhang bj++; 2298f4c0e9e4SHong Zhang } 2299f4c0e9e4SHong Zhang } 230004d41228SHong Zhang /* 230104d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d], work: ",rank); 230204d41228SHong Zhang for (i=0; i<bs*Mbs; i++) PetscPrintf(PETSC_COMM_SELF,"%g ",work[i]); 230304d41228SHong Zhang PetscPrintf(PETSC_COMM_SELF,"[%d]: \n"); 230404d41228SHong Zhang */ 2305f4c0e9e4SHong Zhang 2306f4c0e9e4SHong Zhang /* send values to its owners */ 2307f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2308f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2309ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2310273d9f13SBarry Smith ierr = MPI_Send(svalues,count,MPI_DOUBLE,dest,rank,PETSC_COMM_WORLD);CHKERRQ(ierr); 2311ca54ac64SHong Zhang /* 231204d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] sends %d values to [%d]: %g, %g, %g, %g\n",rank,count,dest,svalues[0],svalues[1],svalues[2],svalues[3]); 2313f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2314ca54ac64SHong Zhang */ 2315ca54ac64SHong Zhang } 2316f4c0e9e4SHong Zhang } 2317f4c0e9e4SHong Zhang 2318f4c0e9e4SHong Zhang /* receive values */ 2319ca54ac64SHong Zhang if (rank){ 2320f4c0e9e4SHong Zhang rvalues = work; 2321ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2322f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 2323154bba0bSHong Zhang ierr = MPI_Recv(rvalues,count,MPI_DOUBLE,MPI_ANY_SOURCE,MPI_ANY_TAG,PETSC_COMM_WORLD,&stat);CHKERRQ(ierr); 2324f4c0e9e4SHong Zhang /* process values */ 2325f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2326ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2327f4c0e9e4SHong Zhang } 2328ca54ac64SHong Zhang /* 232904d41228SHong Zhang PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d] received %d values from [%d]: %g, %g, %g, %g \n",rank,count,stat.MPI_SOURCE,rvalues[0],rvalues[1],rvalues[2],rvalues[3]); 2330f4c0e9e4SHong Zhang PetscSynchronizedFlush(PETSC_COMM_WORLD); 2331ca54ac64SHong Zhang */ 2332f4c0e9e4SHong Zhang } 2333ca54ac64SHong Zhang } 2334f4c0e9e4SHong Zhang 2335f4c0e9e4SHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2336ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 233724d5174aSHong Zhang PetscFunctionReturn(0); 233824d5174aSHong Zhang } 2339