1*f3566a2aSHong Zhang /*$Id: mpisbaij.c,v 1.16 2000/08/30 20:48:25 hzhang Exp hzhang $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 19a30f8f8cSSatish Balay 20a30f8f8cSSatish Balay /* UGLY, ugly, ugly 21a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 22a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 23a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 24a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 25a30f8f8cSSatish Balay into the single precision data structures. 26a30f8f8cSSatish Balay */ 27a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 28a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 29a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay #else 34a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 35a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 39a30f8f8cSSatish Balay #endif 40a30f8f8cSSatish Balay 41a30f8f8cSSatish Balay EXTERN_C_BEGIN 42a30f8f8cSSatish Balay #undef __FUNC__ 43*f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatStoreValues_MPISBAIJ"></a>*/"MatStoreValues_MPISBAIJ" 44a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 45a30f8f8cSSatish Balay { 46*f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 47a30f8f8cSSatish Balay int ierr; 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay PetscFunctionBegin; 50a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 51a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 52a30f8f8cSSatish Balay PetscFunctionReturn(0); 53a30f8f8cSSatish Balay } 54a30f8f8cSSatish Balay EXTERN_C_END 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay EXTERN_C_BEGIN 57a30f8f8cSSatish Balay #undef __FUNC__ 58*f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatRetrieveValues_MPISBAIJ"></a>*/"MatRetrieveValues_MPISBAIJ" 59a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 60a30f8f8cSSatish Balay { 61*f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 62a30f8f8cSSatish Balay int ierr; 63a30f8f8cSSatish Balay 64a30f8f8cSSatish Balay PetscFunctionBegin; 65a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 66a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 67a30f8f8cSSatish Balay PetscFunctionReturn(0); 68a30f8f8cSSatish Balay } 69a30f8f8cSSatish Balay EXTERN_C_END 70a30f8f8cSSatish Balay 71a30f8f8cSSatish Balay /* 72a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 73a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 74a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 75a30f8f8cSSatish Balay length of colmap equals the global matrix length. 76a30f8f8cSSatish Balay */ 77a30f8f8cSSatish Balay #undef __FUNC__ 78a30f8f8cSSatish Balay #define __FUNC__ /*<a name="CreateColmap_MPISBAIJ_Private"></a>*/"CreateColmap_MPISBAIJ_Private" 79a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 80a30f8f8cSSatish Balay { 81a30f8f8cSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 82a30f8f8cSSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 83a30f8f8cSSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 84a30f8f8cSSatish Balay 85a30f8f8cSSatish Balay PetscFunctionBegin; 86*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 87a30f8f8cSSatish Balay PetscFunctionReturn(0); 88a30f8f8cSSatish Balay } 89a30f8f8cSSatish Balay 90a30f8f8cSSatish Balay #define CHUNKSIZE 10 91a30f8f8cSSatish Balay 92a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 93a30f8f8cSSatish Balay { \ 94a30f8f8cSSatish Balay \ 95a30f8f8cSSatish Balay brow = row/bs; \ 96a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 97a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 98a30f8f8cSSatish Balay bcol = col/bs; \ 99a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 100a30f8f8cSSatish Balay low = 0; high = nrow; \ 101a30f8f8cSSatish Balay while (high-low > 3) { \ 102a30f8f8cSSatish Balay t = (low+high)/2; \ 103a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 104a30f8f8cSSatish Balay else low = t; \ 105a30f8f8cSSatish Balay } \ 106a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 107a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 108a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 109a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 110a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 111a30f8f8cSSatish Balay else *bap = value; \ 112a30f8f8cSSatish Balay goto a_noinsert; \ 113a30f8f8cSSatish Balay } \ 114a30f8f8cSSatish Balay } \ 115a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 116a30f8f8cSSatish Balay else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 117a30f8f8cSSatish Balay if (nrow >= rmax) { \ 118a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 119a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 120a30f8f8cSSatish Balay MatScalar *new_a; \ 121a30f8f8cSSatish Balay \ 122a30f8f8cSSatish Balay if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 123a30f8f8cSSatish Balay \ 124a30f8f8cSSatish Balay /* malloc new storage space */ \ 125a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 126a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 127a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 128a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 129a30f8f8cSSatish Balay \ 130a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 131a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 132a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 133a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 135a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 137a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 139a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay /* free up old matrix storage */ \ 141a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 142a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 143a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 144a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 145a30f8f8cSSatish Balay } \ 146a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 147a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 148a30f8f8cSSatish Balay \ 149a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 150a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 151a30f8f8cSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 152a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 153a30f8f8cSSatish Balay a->reallocs++; \ 154a30f8f8cSSatish Balay a->s_nz++; \ 155a30f8f8cSSatish Balay } \ 156a30f8f8cSSatish Balay N = nrow++ - 1; \ 157a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 158a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 159a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 160a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 161a30f8f8cSSatish Balay } \ 162a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 163a30f8f8cSSatish Balay rp[_i] = bcol; \ 164a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 165a30f8f8cSSatish Balay a_noinsert:; \ 166a30f8f8cSSatish Balay ailen[brow] = nrow; \ 167a30f8f8cSSatish Balay } 168a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 169a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 170a30f8f8cSSatish Balay { \ 171a30f8f8cSSatish Balay brow = row/bs; \ 172a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 173a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 174a30f8f8cSSatish Balay bcol = col/bs; \ 175a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 176a30f8f8cSSatish Balay low = 0; high = nrow; \ 177a30f8f8cSSatish Balay while (high-low > 3) { \ 178a30f8f8cSSatish Balay t = (low+high)/2; \ 179a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 180a30f8f8cSSatish Balay else low = t; \ 181a30f8f8cSSatish Balay } \ 182a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 183a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 184a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 185a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 186a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 187a30f8f8cSSatish Balay else *bap = value; \ 188a30f8f8cSSatish Balay goto b_noinsert; \ 189a30f8f8cSSatish Balay } \ 190a30f8f8cSSatish Balay } \ 191a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 192a30f8f8cSSatish Balay else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 193a30f8f8cSSatish Balay if (nrow >= rmax) { \ 194a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 195a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 196a30f8f8cSSatish Balay MatScalar *new_a; \ 197a30f8f8cSSatish Balay \ 198a30f8f8cSSatish Balay if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 199a30f8f8cSSatish Balay \ 200a30f8f8cSSatish Balay /* malloc new storage space */ \ 201a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 202a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 203a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 204a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 205a30f8f8cSSatish Balay \ 206a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 207a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 208a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 209a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 211a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 213a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 215a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay /* free up old matrix storage */ \ 217a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 218a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 219a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 220a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 221a30f8f8cSSatish Balay } \ 222a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 223a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 224a30f8f8cSSatish Balay \ 225a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 226a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 227a30f8f8cSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 228a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 229a30f8f8cSSatish Balay b->reallocs++; \ 230a30f8f8cSSatish Balay b->nz++; \ 231a30f8f8cSSatish Balay } \ 232a30f8f8cSSatish Balay N = nrow++ - 1; \ 233a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 234a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 235a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 236a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 237a30f8f8cSSatish Balay } \ 238a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 239a30f8f8cSSatish Balay rp[_i] = bcol; \ 240a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 241a30f8f8cSSatish Balay b_noinsert:; \ 242a30f8f8cSSatish Balay bilen[brow] = nrow; \ 243a30f8f8cSSatish Balay } 244a30f8f8cSSatish Balay #endif 245a30f8f8cSSatish Balay 246a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 247a30f8f8cSSatish Balay #undef __FUNC__ 248a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ"></a>*/"MatSetValues_MPISBAIJ" 249a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 250a30f8f8cSSatish Balay { 251a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 252a30f8f8cSSatish Balay int ierr,i,N = m*n; 253a30f8f8cSSatish Balay MatScalar *vsingle; 254a30f8f8cSSatish Balay 255a30f8f8cSSatish Balay PetscFunctionBegin; 256a30f8f8cSSatish Balay if (N > b->setvalueslen) { 257a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 258a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 259a30f8f8cSSatish Balay b->setvalueslen = N; 260a30f8f8cSSatish Balay } 261a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 262a30f8f8cSSatish Balay 263a30f8f8cSSatish Balay for (i=0; i<N; i++) { 264a30f8f8cSSatish Balay vsingle[i] = v[i]; 265a30f8f8cSSatish Balay } 266a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 267a30f8f8cSSatish Balay PetscFunctionReturn(0); 268a30f8f8cSSatish Balay } 269a30f8f8cSSatish Balay 270a30f8f8cSSatish Balay #undef __FUNC__ 271a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 272a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 273a30f8f8cSSatish Balay { 274a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 275a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 276a30f8f8cSSatish Balay MatScalar *vsingle; 277a30f8f8cSSatish Balay 278a30f8f8cSSatish Balay PetscFunctionBegin; 279a30f8f8cSSatish Balay if (N > b->setvalueslen) { 280a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 281a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 282a30f8f8cSSatish Balay b->setvalueslen = N; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 285a30f8f8cSSatish Balay for (i=0; i<N; i++) { 286a30f8f8cSSatish Balay vsingle[i] = v[i]; 287a30f8f8cSSatish Balay } 288a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 289a30f8f8cSSatish Balay PetscFunctionReturn(0); 290a30f8f8cSSatish Balay } 291a30f8f8cSSatish Balay 292a30f8f8cSSatish Balay #undef __FUNC__ 293a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT"></a>*/"MatSetValues_MPISBAIJ_HT" 294a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 295a30f8f8cSSatish Balay { 296a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 297a30f8f8cSSatish Balay int ierr,i,N = m*n; 298a30f8f8cSSatish Balay MatScalar *vsingle; 299a30f8f8cSSatish Balay 300a30f8f8cSSatish Balay PetscFunctionBegin; 301*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 302a30f8f8cSSatish Balay PetscFunctionReturn(0); 303a30f8f8cSSatish Balay } 304a30f8f8cSSatish Balay 305a30f8f8cSSatish Balay #undef __FUNC__ 306a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ_HT"></a>*/"MatSetValuesBlocked_MPISBAIJ_HT" 307a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 308a30f8f8cSSatish Balay { 309a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 310a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 311a30f8f8cSSatish Balay MatScalar *vsingle; 312a30f8f8cSSatish Balay 313a30f8f8cSSatish Balay PetscFunctionBegin; 314*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 315a30f8f8cSSatish Balay PetscFunctionReturn(0); 316a30f8f8cSSatish Balay } 317a30f8f8cSSatish Balay #endif 318a30f8f8cSSatish Balay 319a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 320a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 321a30f8f8cSSatish Balay */ 322a30f8f8cSSatish Balay #undef __FUNC__ 323a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPIBAIJ"></a>*/"MatSetValues_MPIBAIJ" 324a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 325a30f8f8cSSatish Balay { 326a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 327a30f8f8cSSatish Balay MatScalar value; 328a30f8f8cSSatish Balay int ierr,i,j,row,col; 329a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 330a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 331a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 332a30f8f8cSSatish Balay 333a30f8f8cSSatish Balay /* Some Variables required in the macro */ 334a30f8f8cSSatish Balay Mat A = baij->A; 335a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 336a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 337a30f8f8cSSatish Balay MatScalar *aa=a->a; 338a30f8f8cSSatish Balay 339a30f8f8cSSatish Balay Mat B = baij->B; 340a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 341a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 342a30f8f8cSSatish Balay MatScalar *ba=b->a; 343a30f8f8cSSatish Balay 344a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 345a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 346a30f8f8cSSatish Balay MatScalar *ap,*bap; 347a30f8f8cSSatish Balay 348a30f8f8cSSatish Balay /* for stash */ 349f65c83cfSHong Zhang int n_loc, *in_loc=0; 350f65c83cfSHong Zhang MatScalar *v_loc=0; 351a30f8f8cSSatish Balay 352a30f8f8cSSatish Balay PetscFunctionBegin; 353a30f8f8cSSatish Balay 354a30f8f8cSSatish Balay if(!baij->donotstash){ 355a30f8f8cSSatish Balay in_loc = (int*)PetscMalloc(n*sizeof(int));CHKPTRQ(in_loc); 356a30f8f8cSSatish Balay v_loc = (MatScalar*)PetscMalloc(n*sizeof(MatScalar));CHKPTRQ(v_loc); 357a30f8f8cSSatish Balay } 358a30f8f8cSSatish Balay 359a30f8f8cSSatish Balay for (i=0; i<m; i++) { 360a30f8f8cSSatish Balay if (im[i] < 0) continue; 361a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 362a30f8f8cSSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 363a30f8f8cSSatish Balay #endif 364a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 365a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 366a30f8f8cSSatish Balay for (j=0; j<n; j++) { 367f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 368a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 369a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 370a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 371a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 372a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 373a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 374a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 375a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 376a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 377a30f8f8cSSatish Balay else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 378a30f8f8cSSatish Balay #endif 379a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 380a30f8f8cSSatish Balay if (mat->was_assembled) { 381a30f8f8cSSatish Balay if (!baij->colmap) { 382a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 383a30f8f8cSSatish Balay } 384a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 385a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 386a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 387a30f8f8cSSatish Balay #else 388a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 389a30f8f8cSSatish Balay #endif 390a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 391a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 392a30f8f8cSSatish Balay col = in[j]; 393a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 394a30f8f8cSSatish Balay B = baij->B; 395a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 396a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 397a30f8f8cSSatish Balay ba=b->a; 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } else col = in[j]; 400a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 401a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 402a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 403a30f8f8cSSatish Balay } 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay } else { /* off processor entry */ 406a30f8f8cSSatish Balay if (!baij->donotstash) { 407a30f8f8cSSatish Balay n_loc = 0; 408a30f8f8cSSatish Balay for (j=0; j<n; j++){ 409f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 410a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 411a30f8f8cSSatish Balay if (roworiented) { 412a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 413a30f8f8cSSatish Balay } else { 414a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 415a30f8f8cSSatish Balay } 416a30f8f8cSSatish Balay n_loc++; 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 419a30f8f8cSSatish Balay } 420a30f8f8cSSatish Balay } 421a30f8f8cSSatish Balay } 422a30f8f8cSSatish Balay 423a30f8f8cSSatish Balay if(!baij->donotstash){ 424a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 425a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 426a30f8f8cSSatish Balay } 427a30f8f8cSSatish Balay PetscFunctionReturn(0); 428a30f8f8cSSatish Balay } 429a30f8f8cSSatish Balay 430a30f8f8cSSatish Balay #undef __FUNC__ 431a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 432a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 433a30f8f8cSSatish Balay { 434a30f8f8cSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 435a30f8f8cSSatish Balay MatScalar *value,*barray=baij->barray; 436a30f8f8cSSatish Balay int ierr,i,j,ii,jj,row,col; 437a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 438a30f8f8cSSatish Balay int rend=baij->rend,cstart=baij->cstart,stepval; 439a30f8f8cSSatish Balay int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 440a30f8f8cSSatish Balay 441a30f8f8cSSatish Balay PetscFunctionBegin; 442*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 443a30f8f8cSSatish Balay PetscFunctionReturn(0); 444a30f8f8cSSatish Balay } 445a30f8f8cSSatish Balay 446a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 447a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 448a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 449a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 450a30f8f8cSSatish Balay #undef __FUNC__ 451a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT_MatScalar"></a>*/"MatSetValues_MPISBAIJ_HT_MatScalar" 452a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 453a30f8f8cSSatish Balay { 454a30f8f8cSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 455a30f8f8cSSatish Balay int ierr,i,j,row,col; 456a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 457a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 458a30f8f8cSSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 459a30f8f8cSSatish Balay PetscReal tmp; 460a30f8f8cSSatish Balay MatScalar **HD = baij->hd,value; 461a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 462a30f8f8cSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 463a30f8f8cSSatish Balay #endif 464a30f8f8cSSatish Balay 465a30f8f8cSSatish Balay PetscFunctionBegin; 466*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 467a30f8f8cSSatish Balay PetscFunctionReturn(0); 468a30f8f8cSSatish Balay } 469a30f8f8cSSatish Balay 470a30f8f8cSSatish Balay #undef __FUNC__ 471a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 472a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 473a30f8f8cSSatish Balay { 474a30f8f8cSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 475a30f8f8cSSatish Balay int ierr,i,j,ii,jj,row,col; 476a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 477a30f8f8cSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 478a30f8f8cSSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 479a30f8f8cSSatish Balay PetscReal tmp; 480a30f8f8cSSatish Balay MatScalar **HD = baij->hd,*baij_a; 481a30f8f8cSSatish Balay MatScalar *v_t,*value; 482a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 483a30f8f8cSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 484a30f8f8cSSatish Balay #endif 485a30f8f8cSSatish Balay 486a30f8f8cSSatish Balay PetscFunctionBegin; 487*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 488a30f8f8cSSatish Balay PetscFunctionReturn(0); 489a30f8f8cSSatish Balay } 490a30f8f8cSSatish Balay 491a30f8f8cSSatish Balay #undef __FUNC__ 492a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetValues_MPISBAIJ" 493a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 494a30f8f8cSSatish Balay { 495*f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 496a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 497a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 498a30f8f8cSSatish Balay 499a30f8f8cSSatish Balay PetscFunctionBegin; 500a30f8f8cSSatish Balay for (i=0; i<m; i++) { 501a30f8f8cSSatish Balay if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 502a30f8f8cSSatish Balay if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 503a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 504a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 505a30f8f8cSSatish Balay for (j=0; j<n; j++) { 506a30f8f8cSSatish Balay if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 507a30f8f8cSSatish Balay if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 508a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 509a30f8f8cSSatish Balay col = idxn[j] - bscstart; 510c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 511a30f8f8cSSatish Balay } else { 512a30f8f8cSSatish Balay if (!baij->colmap) { 513a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 514a30f8f8cSSatish Balay } 515a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 516a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 517a30f8f8cSSatish Balay data --; 518a30f8f8cSSatish Balay #else 519a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 520a30f8f8cSSatish Balay #endif 521a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 522a30f8f8cSSatish Balay else { 523a30f8f8cSSatish Balay col = data + idxn[j]%bs; 524c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 525a30f8f8cSSatish Balay } 526a30f8f8cSSatish Balay } 527a30f8f8cSSatish Balay } 528a30f8f8cSSatish Balay } else { 529a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 530a30f8f8cSSatish Balay } 531a30f8f8cSSatish Balay } 532a30f8f8cSSatish Balay PetscFunctionReturn(0); 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay 535a30f8f8cSSatish Balay #undef __FUNC__ 536a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatNorm_MPISBAIJ" 537a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 538a30f8f8cSSatish Balay { 539a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 540bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 541bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 542a30f8f8cSSatish Balay int ierr; 543a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 544a30f8f8cSSatish Balay 545a30f8f8cSSatish Balay PetscFunctionBegin; 546a30f8f8cSSatish Balay if (baij->size == 1) { 547a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 548a30f8f8cSSatish Balay } else { 549a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 550ee237329SHong Zhang lnorm2 = (double*)PetscMalloc(2*sizeof(double));CHKPTRQ(lnorm2); 551a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 552a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 553a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 554a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 555a30f8f8cSSatish Balay /* 556a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 557a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 558a30f8f8cSSatish Balay */ 559a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 560a30f8f8cSSatish Balay /* 561a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 562a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 563a30f8f8cSSatish Balay 564a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 565a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 566a30f8f8cSSatish Balay } else { 567a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay } 570a30f8f8cSSatish Balay PetscFunctionReturn(0); 571a30f8f8cSSatish Balay } 572a30f8f8cSSatish Balay 573a30f8f8cSSatish Balay /* 574a30f8f8cSSatish Balay Creates the hash table, and sets the table 575a30f8f8cSSatish Balay This table is created only once. 576a30f8f8cSSatish Balay If new entried need to be added to the matrix 577a30f8f8cSSatish Balay then the hash table has to be destroyed and 578a30f8f8cSSatish Balay recreated. 579a30f8f8cSSatish Balay */ 580a30f8f8cSSatish Balay #undef __FUNC__ 581a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateHashTable_MPISBAIJ_Private" 582a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 583a30f8f8cSSatish Balay { 584a30f8f8cSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 585a30f8f8cSSatish Balay Mat A = baij->A,B=baij->B; 586a30f8f8cSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 587a30f8f8cSSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 588a30f8f8cSSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 589a30f8f8cSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 590a30f8f8cSSatish Balay int *HT,key; 591a30f8f8cSSatish Balay MatScalar **HD; 592a30f8f8cSSatish Balay PetscReal tmp; 593a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 594a30f8f8cSSatish Balay int ct=0,max=0; 595a30f8f8cSSatish Balay #endif 596a30f8f8cSSatish Balay 597a30f8f8cSSatish Balay PetscFunctionBegin; 598*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 599a30f8f8cSSatish Balay PetscFunctionReturn(0); 600a30f8f8cSSatish Balay } 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay #undef __FUNC__ 603a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyBegin_MPISBAIJ" 604a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 605a30f8f8cSSatish Balay { 606a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 607a30f8f8cSSatish Balay int ierr,nstash,reallocs; 608a30f8f8cSSatish Balay InsertMode addv; 609a30f8f8cSSatish Balay 610a30f8f8cSSatish Balay PetscFunctionBegin; 611a30f8f8cSSatish Balay if (baij->donotstash) { 612a30f8f8cSSatish Balay PetscFunctionReturn(0); 613a30f8f8cSSatish Balay } 614a30f8f8cSSatish Balay 615a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 616a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 617a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 618a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 619a30f8f8cSSatish Balay } 620a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 621a30f8f8cSSatish Balay 622a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 623a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 624a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 625a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 626a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 627a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 628a30f8f8cSSatish Balay PetscFunctionReturn(0); 629a30f8f8cSSatish Balay } 630a30f8f8cSSatish Balay 631a30f8f8cSSatish Balay #undef __FUNC__ 632a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyEnd_MPISBAIJ" 633a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 634a30f8f8cSSatish Balay { 635a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 636a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 637a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 638a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 639a30f8f8cSSatish Balay int *row,*col,other_disassembled; 640a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 641a30f8f8cSSatish Balay MatScalar *val; 642a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 643a30f8f8cSSatish Balay int rank; 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay PetscFunctionBegin; 646a30f8f8cSSatish Balay /* remove 2 line below later */ 647a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); 648a30f8f8cSSatish Balay 649a30f8f8cSSatish Balay if (!baij->donotstash) { 650a30f8f8cSSatish Balay while (1) { 651a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 652a30f8f8cSSatish Balay /* 653a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 654a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 655a30f8f8cSSatish Balay */ 656a30f8f8cSSatish Balay if (!flg) break; 657a30f8f8cSSatish Balay 658a30f8f8cSSatish Balay for (i=0; i<n;) { 659a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 660a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 661a30f8f8cSSatish Balay if (j < n) ncols = j-i; 662a30f8f8cSSatish Balay else ncols = n-i; 663a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 664a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 665a30f8f8cSSatish Balay i = j; 666a30f8f8cSSatish Balay } 667a30f8f8cSSatish Balay } 668a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 669a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 670a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 671a30f8f8cSSatish Balay restore the original flags */ 672a30f8f8cSSatish Balay r1 = baij->roworiented; 673a30f8f8cSSatish Balay r2 = a->roworiented; 674a30f8f8cSSatish Balay r3 = b->roworiented; 675a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 676a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 677a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 678a30f8f8cSSatish Balay while (1) { 679a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 680a30f8f8cSSatish Balay if (!flg) break; 681a30f8f8cSSatish Balay 682a30f8f8cSSatish Balay for (i=0; i<n;) { 683a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 684a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 685a30f8f8cSSatish Balay if (j < n) ncols = j-i; 686a30f8f8cSSatish Balay else ncols = n-i; 687a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 688a30f8f8cSSatish Balay i = j; 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 692a30f8f8cSSatish Balay baij->roworiented = r1; 693a30f8f8cSSatish Balay a->roworiented = r2; 694a30f8f8cSSatish Balay b->roworiented = r3; 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay 697a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 698a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 699a30f8f8cSSatish Balay 700a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 701a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 702a30f8f8cSSatish Balay /* 703a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 704a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 705a30f8f8cSSatish Balay */ 706a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 707a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 708a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 709c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 710a30f8f8cSSatish Balay } 711a30f8f8cSSatish Balay } 712a30f8f8cSSatish Balay 713a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 714a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 715a30f8f8cSSatish Balay } 716a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 718a30f8f8cSSatish Balay 719a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 720a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 721a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 722a30f8f8cSSatish Balay baij->ht_total_ct = 0; 723a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay #endif 726a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 727c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 728a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 729a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 730a30f8f8cSSatish Balay } 731a30f8f8cSSatish Balay 732a30f8f8cSSatish Balay if (baij->rowvalues) { 733a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 734a30f8f8cSSatish Balay baij->rowvalues = 0; 735a30f8f8cSSatish Balay } 736a30f8f8cSSatish Balay PetscFunctionReturn(0); 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay 739a30f8f8cSSatish Balay #undef __FUNC__ 740a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ_ASCIIorDraworSocket" 741a30f8f8cSSatish Balay static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 742a30f8f8cSSatish Balay { 743a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 744a30f8f8cSSatish Balay int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 745a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 74665d70643SHong Zhang Viewer sviewer; 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay PetscFunctionBegin; 749a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 750a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 751a30f8f8cSSatish Balay if (isascii) { 752a30f8f8cSSatish Balay ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 753a30f8f8cSSatish Balay if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 754a30f8f8cSSatish Balay MatInfo info; 755a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 756a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 758a30f8f8cSSatish Balay rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 759a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 760a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 761a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 762a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 763a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 764a30f8f8cSSatish Balay ierr = ViewerFlush(viewer);CHKERRQ(ierr); 765a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 766a30f8f8cSSatish Balay PetscFunctionReturn(0); 767a30f8f8cSSatish Balay } else if (format == VIEWER_FORMAT_ASCII_INFO) { 768a30f8f8cSSatish Balay ierr = ViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 769a30f8f8cSSatish Balay PetscFunctionReturn(0); 770a30f8f8cSSatish Balay } 771a30f8f8cSSatish Balay } 772a30f8f8cSSatish Balay 773a30f8f8cSSatish Balay if (isdraw) { 774a30f8f8cSSatish Balay Draw draw; 775a30f8f8cSSatish Balay PetscTruth isnull; 776a30f8f8cSSatish Balay ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 777a30f8f8cSSatish Balay ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay 780a30f8f8cSSatish Balay if (size == 1) { 781a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 782a30f8f8cSSatish Balay } else { 783a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 784a30f8f8cSSatish Balay Mat A; 78565d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 78665d70643SHong Zhang Mat_SeqBAIJ *Bloc; 787a30f8f8cSSatish Balay int M = baij->M,N = baij->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 788a30f8f8cSSatish Balay MatScalar *a; 789a30f8f8cSSatish Balay 790a30f8f8cSSatish Balay if (!rank) { 791bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 792a30f8f8cSSatish Balay } else { 793f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 794a30f8f8cSSatish Balay } 795a30f8f8cSSatish Balay PLogObjectParent(mat,A); 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay /* copy over the A part */ 79865d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 799a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 800a30f8f8cSSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 801a30f8f8cSSatish Balay 802a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 803a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 804a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 805a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 806a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 807a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 808a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 809a30f8f8cSSatish Balay col++; a += bs; 810a30f8f8cSSatish Balay } 811a30f8f8cSSatish Balay } 812a30f8f8cSSatish Balay } 813a30f8f8cSSatish Balay /* copy over the B part */ 81465d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 81565d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 816a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 817a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 818a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 819a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 820a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 821a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 822a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 823a30f8f8cSSatish Balay col++; a += bs; 824a30f8f8cSSatish Balay } 825a30f8f8cSSatish Balay } 826a30f8f8cSSatish Balay } 827a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 828a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 829a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 830a30f8f8cSSatish Balay /* 831a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 832a30f8f8cSSatish Balay synchronized across all processors that share the Draw object 833a30f8f8cSSatish Balay */ 834a30f8f8cSSatish Balay ierr = ViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 83565d70643SHong Zhang if (!rank) { 836a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 837a30f8f8cSSatish Balay } 83865d70643SHong Zhang ierr = ViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 839a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 840a30f8f8cSSatish Balay } 841a30f8f8cSSatish Balay PetscFunctionReturn(0); 842a30f8f8cSSatish Balay } 843a30f8f8cSSatish Balay 844a30f8f8cSSatish Balay #undef __FUNC__ 845a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ" 846a30f8f8cSSatish Balay int MatView_MPISBAIJ(Mat mat,Viewer viewer) 847a30f8f8cSSatish Balay { 848a30f8f8cSSatish Balay int ierr; 849a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 850a30f8f8cSSatish Balay 851a30f8f8cSSatish Balay PetscFunctionBegin; 852a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 853a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 854a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,SOCKET_VIEWER,&issocket);CHKERRQ(ierr); 855a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 856a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 857a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 858a30f8f8cSSatish Balay } else { 859a30f8f8cSSatish Balay SETERRQ1(1,1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 860a30f8f8cSSatish Balay } 861a30f8f8cSSatish Balay PetscFunctionReturn(0); 862a30f8f8cSSatish Balay } 863a30f8f8cSSatish Balay 864a30f8f8cSSatish Balay #undef __FUNC__ 865a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDestroy_MPISBAIJ" 866a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 867a30f8f8cSSatish Balay { 868a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 869a30f8f8cSSatish Balay int ierr; 870a30f8f8cSSatish Balay 871a30f8f8cSSatish Balay PetscFunctionBegin; 872a30f8f8cSSatish Balay 873a30f8f8cSSatish Balay if (mat->mapping) { 874a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 875a30f8f8cSSatish Balay } 876a30f8f8cSSatish Balay if (mat->bmapping) { 877a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay if (mat->rmap) { 880a30f8f8cSSatish Balay ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 881a30f8f8cSSatish Balay } 882a30f8f8cSSatish Balay if (mat->cmap) { 883a30f8f8cSSatish Balay ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 884a30f8f8cSSatish Balay } 885a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 886a30f8f8cSSatish Balay PLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",baij->M,baij->N); 887a30f8f8cSSatish Balay #endif 888a30f8f8cSSatish Balay 889a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 890a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 891a30f8f8cSSatish Balay 892a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 893a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 894a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 895a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 896a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 897a30f8f8cSSatish Balay #else 898a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 899a30f8f8cSSatish Balay #endif 900a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 901a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 902a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 903a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 904a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 905a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 906a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 907a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 908a30f8f8cSSatish Balay #endif 909a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 910a30f8f8cSSatish Balay PLogObjectDestroy(mat); 911a30f8f8cSSatish Balay PetscHeaderDestroy(mat); 912a30f8f8cSSatish Balay PetscFunctionReturn(0); 913a30f8f8cSSatish Balay } 914a30f8f8cSSatish Balay 915a30f8f8cSSatish Balay #undef __FUNC__ 916a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMult_MPISBAIJ" 917a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 918a30f8f8cSSatish Balay { 919a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 920a30f8f8cSSatish Balay int ierr,nt; 921a30f8f8cSSatish Balay 922a30f8f8cSSatish Balay PetscFunctionBegin; 923a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 924a30f8f8cSSatish Balay if (nt != a->n) { 925a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 926a30f8f8cSSatish Balay } 927a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 928a30f8f8cSSatish Balay if (nt != a->m) { 929a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 930a30f8f8cSSatish Balay } 93165d70643SHong Zhang 932b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 933b941877fSHong Zhang /* do diagonal part */ 934b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 935b941877fSHong Zhang /* do supperdiagonal part */ 936b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 937b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 938b941877fSHong Zhang /* do subdiagonal part */ 939b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 940b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 941b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 94265d70643SHong Zhang 943a30f8f8cSSatish Balay PetscFunctionReturn(0); 944a30f8f8cSSatish Balay } 945a30f8f8cSSatish Balay 946a30f8f8cSSatish Balay #undef __FUNC__ 947a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultAdd_MPISBAIJ" 948a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 949a30f8f8cSSatish Balay { 950de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 951aa482183SHong Zhang int ierr; 952a30f8f8cSSatish Balay 953a30f8f8cSSatish Balay PetscFunctionBegin; 954b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 955b941877fSHong Zhang /* do diagonal part */ 956b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 957b941877fSHong Zhang /* do supperdiagonal part */ 958b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 959de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 960de8b6608SHong Zhang 961b941877fSHong Zhang /* do subdiagonal part */ 962a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 963a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 964a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 965aa482183SHong Zhang 966a30f8f8cSSatish Balay PetscFunctionReturn(0); 967a30f8f8cSSatish Balay } 968a30f8f8cSSatish Balay 969a30f8f8cSSatish Balay #undef __FUNC__ 970a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTranspose_MPISBAIJ" 971a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 972a30f8f8cSSatish Balay { 973a30f8f8cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 974a30f8f8cSSatish Balay int ierr; 975a30f8f8cSSatish Balay 976a30f8f8cSSatish Balay PetscFunctionBegin; 977*f3566a2aSHong Zhang SETERRQ(1,1,"Matrix is symmetric. Call MatMult()."); 978a30f8f8cSSatish Balay PetscFunctionReturn(0); 979a30f8f8cSSatish Balay } 980a30f8f8cSSatish Balay 981a30f8f8cSSatish Balay #undef __FUNC__ 982a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTransposeAdd_MPISBAIJ" 983a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 984a30f8f8cSSatish Balay { 985a30f8f8cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 986a30f8f8cSSatish Balay int ierr; 987a30f8f8cSSatish Balay 988a30f8f8cSSatish Balay PetscFunctionBegin; 989*f3566a2aSHong Zhang SETERRQ(1,1,"Matrix is symmetric. Call MatMultAdd()."); 990a30f8f8cSSatish Balay PetscFunctionReturn(0); 991a30f8f8cSSatish Balay } 992a30f8f8cSSatish Balay 993a30f8f8cSSatish Balay /* 994a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 995a30f8f8cSSatish Balay diagonal block 996a30f8f8cSSatish Balay */ 997a30f8f8cSSatish Balay #undef __FUNC__ 998a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonal_MPISBAIJ" 999a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 1000a30f8f8cSSatish Balay { 1001a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1002a30f8f8cSSatish Balay int ierr; 1003a30f8f8cSSatish Balay 1004a30f8f8cSSatish Balay PetscFunctionBegin; 1005a30f8f8cSSatish Balay /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); */ 1006a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 1007a30f8f8cSSatish Balay PetscFunctionReturn(0); 1008a30f8f8cSSatish Balay } 1009a30f8f8cSSatish Balay 1010a30f8f8cSSatish Balay #undef __FUNC__ 1011a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatScale_MPISBAIJ" 1012a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 1013a30f8f8cSSatish Balay { 1014a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1015a30f8f8cSSatish Balay int ierr; 1016a30f8f8cSSatish Balay 1017a30f8f8cSSatish Balay PetscFunctionBegin; 1018a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1019a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 1020a30f8f8cSSatish Balay PetscFunctionReturn(0); 1021a30f8f8cSSatish Balay } 1022a30f8f8cSSatish Balay 1023a30f8f8cSSatish Balay #undef __FUNC__ 1024a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetSize_MPISBAIJ" 1025a30f8f8cSSatish Balay int MatGetSize_MPISBAIJ(Mat matin,int *m,int *n) 1026a30f8f8cSSatish Balay { 1027a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1028a30f8f8cSSatish Balay 1029a30f8f8cSSatish Balay PetscFunctionBegin; 1030a30f8f8cSSatish Balay if (m) *m = mat->M; 1031a30f8f8cSSatish Balay if (n) *n = mat->N; 1032a30f8f8cSSatish Balay PetscFunctionReturn(0); 1033a30f8f8cSSatish Balay } 1034a30f8f8cSSatish Balay 1035a30f8f8cSSatish Balay #undef __FUNC__ 1036a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetLocalSize_MPISBAIJ" 1037a30f8f8cSSatish Balay int MatGetLocalSize_MPISBAIJ(Mat matin,int *m,int *n) 1038a30f8f8cSSatish Balay { 1039a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1040a30f8f8cSSatish Balay 1041a30f8f8cSSatish Balay PetscFunctionBegin; 1042a30f8f8cSSatish Balay *m = mat->m; *n = mat->n; 1043a30f8f8cSSatish Balay PetscFunctionReturn(0); 1044a30f8f8cSSatish Balay } 1045a30f8f8cSSatish Balay 1046a30f8f8cSSatish Balay #undef __FUNC__ 1047a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetOwnershipRange_MPISBAIJ" 1048a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 1049a30f8f8cSSatish Balay { 1050a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1051a30f8f8cSSatish Balay 1052a30f8f8cSSatish Balay PetscFunctionBegin; 1053a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 1054a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 1055a30f8f8cSSatish Balay PetscFunctionReturn(0); 1056a30f8f8cSSatish Balay } 1057a30f8f8cSSatish Balay 1058a30f8f8cSSatish Balay #undef __FUNC__ 1059a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetRow_MPISBAIJ" 1060a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1061a30f8f8cSSatish Balay { 1062a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1063a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1064a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1065a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1066a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1067a30f8f8cSSatish Balay 1068a30f8f8cSSatish Balay PetscFunctionBegin; 1069a30f8f8cSSatish Balay if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1070a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1071a30f8f8cSSatish Balay 1072a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1073a30f8f8cSSatish Balay /* 1074a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1075a30f8f8cSSatish Balay */ 1076a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1077a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1078a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1079a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1080a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1081a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1082a30f8f8cSSatish Balay } 1083a30f8f8cSSatish Balay mat->rowvalues = (Scalar*)PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1084a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1085a30f8f8cSSatish Balay } 1086a30f8f8cSSatish Balay 1087a30f8f8cSSatish Balay if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1088a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1089a30f8f8cSSatish Balay 1090a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1091a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1092a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1093a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1094a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1095a30f8f8cSSatish Balay nztot = nzA + nzB; 1096a30f8f8cSSatish Balay 1097a30f8f8cSSatish Balay cmap = mat->garray; 1098a30f8f8cSSatish Balay if (v || idx) { 1099a30f8f8cSSatish Balay if (nztot) { 1100a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1101a30f8f8cSSatish Balay int imark = -1; 1102a30f8f8cSSatish Balay if (v) { 1103a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1104a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1105a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1106a30f8f8cSSatish Balay else break; 1107a30f8f8cSSatish Balay } 1108a30f8f8cSSatish Balay imark = i; 1109a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1110a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1111a30f8f8cSSatish Balay } 1112a30f8f8cSSatish Balay if (idx) { 1113a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1114a30f8f8cSSatish Balay if (imark > -1) { 1115a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1116a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1117a30f8f8cSSatish Balay } 1118a30f8f8cSSatish Balay } else { 1119a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1120a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1121a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1122a30f8f8cSSatish Balay else break; 1123a30f8f8cSSatish Balay } 1124a30f8f8cSSatish Balay imark = i; 1125a30f8f8cSSatish Balay } 1126a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1127a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1128a30f8f8cSSatish Balay } 1129a30f8f8cSSatish Balay } else { 1130a30f8f8cSSatish Balay if (idx) *idx = 0; 1131a30f8f8cSSatish Balay if (v) *v = 0; 1132a30f8f8cSSatish Balay } 1133a30f8f8cSSatish Balay } 1134a30f8f8cSSatish Balay *nz = nztot; 1135a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1136a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay PetscFunctionReturn(0); 1138a30f8f8cSSatish Balay } 1139a30f8f8cSSatish Balay 1140a30f8f8cSSatish Balay #undef __FUNC__ 1141a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatRestoreRow_MPISBAIJ" 1142a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1143a30f8f8cSSatish Balay { 1144a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay PetscFunctionBegin; 1147a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1148a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1149a30f8f8cSSatish Balay } 1150a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1151a30f8f8cSSatish Balay PetscFunctionReturn(0); 1152a30f8f8cSSatish Balay } 1153a30f8f8cSSatish Balay 1154a30f8f8cSSatish Balay #undef __FUNC__ 1155a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetBlockSize_MPISBAIJ" 1156a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1157a30f8f8cSSatish Balay { 1158a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1159a30f8f8cSSatish Balay 1160a30f8f8cSSatish Balay PetscFunctionBegin; 1161a30f8f8cSSatish Balay *bs = baij->bs; 1162a30f8f8cSSatish Balay PetscFunctionReturn(0); 1163a30f8f8cSSatish Balay } 1164a30f8f8cSSatish Balay 1165a30f8f8cSSatish Balay #undef __FUNC__ 1166a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroEntries_MPISBAIJ" 1167a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1168a30f8f8cSSatish Balay { 1169a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1170a30f8f8cSSatish Balay int ierr; 1171a30f8f8cSSatish Balay 1172a30f8f8cSSatish Balay PetscFunctionBegin; 1173a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1174a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1175a30f8f8cSSatish Balay PetscFunctionReturn(0); 1176a30f8f8cSSatish Balay } 1177a30f8f8cSSatish Balay 1178a30f8f8cSSatish Balay #undef __FUNC__ 1179a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetInfo_MPISBAIJ" 1180a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1181a30f8f8cSSatish Balay { 1182a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1183a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1184a30f8f8cSSatish Balay int ierr; 1185a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1186a30f8f8cSSatish Balay 1187a30f8f8cSSatish Balay PetscFunctionBegin; 1188a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1189a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1190a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1191a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1192a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1193a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1194a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1195a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1196a30f8f8cSSatish Balay info->nz_used = isend[0]; 1197a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1198a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1199a30f8f8cSSatish Balay info->memory = isend[3]; 1200a30f8f8cSSatish Balay info->mallocs = isend[4]; 1201a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1202a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1203a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1204a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1205a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1206a30f8f8cSSatish Balay info->memory = irecv[3]; 1207a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1208a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1209a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1210a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1211a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1212a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1213a30f8f8cSSatish Balay info->memory = irecv[3]; 1214a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1215a30f8f8cSSatish Balay } else { 1216a30f8f8cSSatish Balay SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag); 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay info->rows_global = (double)a->M; 1219a30f8f8cSSatish Balay info->columns_global = (double)a->N; 1220a30f8f8cSSatish Balay info->rows_local = (double)a->m; 1221a30f8f8cSSatish Balay info->columns_local = (double)a->N; 1222a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1223a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1224a30f8f8cSSatish Balay info->factor_mallocs = 0; 1225a30f8f8cSSatish Balay PetscFunctionReturn(0); 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 1228a30f8f8cSSatish Balay #undef __FUNC__ 1229a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetOption_MPISBAIJ" 1230a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1233a30f8f8cSSatish Balay int ierr; 1234a30f8f8cSSatish Balay 1235a30f8f8cSSatish Balay PetscFunctionBegin; 1236a30f8f8cSSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 1237a30f8f8cSSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 1238a30f8f8cSSatish Balay op == MAT_COLUMNS_UNSORTED || 1239a30f8f8cSSatish Balay op == MAT_COLUMNS_SORTED || 1240a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 1241a30f8f8cSSatish Balay op == MAT_KEEP_ZEROED_ROWS || 1242a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 1243a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1244a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1245a30f8f8cSSatish Balay } else if (op == MAT_ROW_ORIENTED) { 1246a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1247a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1249a30f8f8cSSatish Balay } else if (op == MAT_ROWS_SORTED || 1250a30f8f8cSSatish Balay op == MAT_ROWS_UNSORTED || 1251a30f8f8cSSatish Balay op == MAT_SYMMETRIC || 1252a30f8f8cSSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1253a30f8f8cSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1254a30f8f8cSSatish Balay op == MAT_USE_HASH_TABLE) { 1255a30f8f8cSSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1256a30f8f8cSSatish Balay } else if (op == MAT_COLUMN_ORIENTED) { 1257a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1258a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1259a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1260a30f8f8cSSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 1261a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1262a30f8f8cSSatish Balay } else if (op == MAT_NO_NEW_DIAGONALS) { 1263a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1264a30f8f8cSSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1265a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1266a30f8f8cSSatish Balay } else { 1267a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1268a30f8f8cSSatish Balay } 1269a30f8f8cSSatish Balay PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 1272a30f8f8cSSatish Balay #undef __FUNC__ 1273a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatTranspose_MPISBAIJ(" 1274a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 1277a30f8f8cSSatish Balay Mat_SeqBAIJ *Aloc; 1278a30f8f8cSSatish Balay Mat B; 1279a30f8f8cSSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col; 1280a30f8f8cSSatish Balay int bs=baij->bs,mbs=baij->mbs; 1281a30f8f8cSSatish Balay MatScalar *a; 1282a30f8f8cSSatish Balay 1283a30f8f8cSSatish Balay PetscFunctionBegin; 1284*f3566a2aSHong Zhang SETERRQ(1,1,"Matrix is symmetric. MatTranspose() should not be called"); 1285a30f8f8cSSatish Balay PetscFunctionReturn(0); 1286a30f8f8cSSatish Balay } 1287a30f8f8cSSatish Balay 1288a30f8f8cSSatish Balay #undef __FUNC__ 1289a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDiagonalScale_MPISBAIJ" 1290a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1291a30f8f8cSSatish Balay { 1292a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1293a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1294a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1295a30f8f8cSSatish Balay 1296a30f8f8cSSatish Balay PetscFunctionBegin; 1297a30f8f8cSSatish Balay if (ll != rr) { 1298a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"For symmetric format, left and right scaling vectors must be same\n"); 1299a30f8f8cSSatish Balay } 1300a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay if (rr) { 1302a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 1304a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1305a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay /*} if (ll) { */ 1307a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1308a30f8f8cSSatish Balay if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 1309a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1310a30f8f8cSSatish Balay /* } */ 1311a30f8f8cSSatish Balay /* scale the diagonal block */ 1312a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1313a30f8f8cSSatish Balay 1314a30f8f8cSSatish Balay /* if (rr) { */ 1315a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1316a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1318a30f8f8cSSatish Balay } 1319a30f8f8cSSatish Balay 1320a30f8f8cSSatish Balay PetscFunctionReturn(0); 1321a30f8f8cSSatish Balay } 1322a30f8f8cSSatish Balay 1323a30f8f8cSSatish Balay #undef __FUNC__ 1324a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroRows_MPISBAIJ" 1325a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1326a30f8f8cSSatish Balay { 1327a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1328a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1329a30f8f8cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 1330a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1331a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1332a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1333a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1334a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1335a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1336a30f8f8cSSatish Balay IS istmp; 1337a30f8f8cSSatish Balay 1338a30f8f8cSSatish Balay PetscFunctionBegin; 1339a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1341a30f8f8cSSatish Balay 1342a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 1343a30f8f8cSSatish Balay nprocs = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(nprocs); 1344a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1345a30f8f8cSSatish Balay procs = nprocs + size; 1346a30f8f8cSSatish Balay owner = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 1347a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1348a30f8f8cSSatish Balay idx = rows[i]; 1349a30f8f8cSSatish Balay found = 0; 1350a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1351a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1352a30f8f8cSSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 1353a30f8f8cSSatish Balay } 1354a30f8f8cSSatish Balay } 1355a30f8f8cSSatish Balay if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 1356a30f8f8cSSatish Balay } 1357a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1358a30f8f8cSSatish Balay 1359a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 1360a30f8f8cSSatish Balay work = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(work); 1361a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1362a30f8f8cSSatish Balay nmax = work[rank]; 1363a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1364a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1365a30f8f8cSSatish Balay 1366a30f8f8cSSatish Balay /* post receives: */ 1367a30f8f8cSSatish Balay rvalues = (int*)PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1368a30f8f8cSSatish Balay recv_waits = (MPI_Request*)PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 1369a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1370a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1371a30f8f8cSSatish Balay } 1372a30f8f8cSSatish Balay 1373a30f8f8cSSatish Balay /* do sends: 1374a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1375a30f8f8cSSatish Balay the ith processor 1376a30f8f8cSSatish Balay */ 1377a30f8f8cSSatish Balay svalues = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(svalues); 1378a30f8f8cSSatish Balay send_waits = (MPI_Request*)PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 1379a30f8f8cSSatish Balay starts = (int*)PetscMalloc((size+1)*sizeof(int));CHKPTRQ(starts); 1380a30f8f8cSSatish Balay starts[0] = 0; 1381a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1382a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1383a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1384a30f8f8cSSatish Balay } 1385a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1386a30f8f8cSSatish Balay 1387a30f8f8cSSatish Balay starts[0] = 0; 1388a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1389a30f8f8cSSatish Balay count = 0; 1390a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1391a30f8f8cSSatish Balay if (procs[i]) { 1392a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1393a30f8f8cSSatish Balay } 1394a30f8f8cSSatish Balay } 1395a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay 1397a30f8f8cSSatish Balay base = owners[rank]*bs; 1398a30f8f8cSSatish Balay 1399a30f8f8cSSatish Balay /* wait on receives */ 1400a30f8f8cSSatish Balay lens = (int*)PetscMalloc(2*(nrecvs+1)*sizeof(int));CHKPTRQ(lens); 1401a30f8f8cSSatish Balay source = lens + nrecvs; 1402a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1403a30f8f8cSSatish Balay while (count) { 1404a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1405a30f8f8cSSatish Balay /* unpack receives into our local space */ 1406a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1407a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1408a30f8f8cSSatish Balay lens[imdex] = n; 1409a30f8f8cSSatish Balay slen += n; 1410a30f8f8cSSatish Balay count--; 1411a30f8f8cSSatish Balay } 1412a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1413a30f8f8cSSatish Balay 1414a30f8f8cSSatish Balay /* move the data into the send scatter */ 1415a30f8f8cSSatish Balay lrows = (int*)PetscMalloc((slen+1)*sizeof(int));CHKPTRQ(lrows); 1416a30f8f8cSSatish Balay count = 0; 1417a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1418a30f8f8cSSatish Balay values = rvalues + i*nmax; 1419a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1420a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1421a30f8f8cSSatish Balay } 1422a30f8f8cSSatish Balay } 1423a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1424a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1425a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1426a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1427a30f8f8cSSatish Balay 1428a30f8f8cSSatish Balay /* actually zap the local rows */ 1429a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1430a30f8f8cSSatish Balay PLogObjectParent(A,istmp); 1431a30f8f8cSSatish Balay 1432a30f8f8cSSatish Balay /* 1433a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1434a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1435a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1436a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1437a30f8f8cSSatish Balay 1438a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1439a30f8f8cSSatish Balay */ 1440a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1441c8407628SSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1442a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1443a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1444a30f8f8cSSatish Balay } else if (diag) { 1445a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1446a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 1447a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1448a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1449a30f8f8cSSatish Balay } 1450a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1451a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1452a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1453a30f8f8cSSatish Balay } 1454a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1455a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1456a30f8f8cSSatish Balay } else { 1457a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1458a30f8f8cSSatish Balay } 1459a30f8f8cSSatish Balay 1460a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1461a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1462a30f8f8cSSatish Balay 1463a30f8f8cSSatish Balay /* wait on sends */ 1464a30f8f8cSSatish Balay if (nsends) { 1465a30f8f8cSSatish Balay send_status = (MPI_Status*)PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1466a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1467a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1468a30f8f8cSSatish Balay } 1469a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1470a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1471a30f8f8cSSatish Balay 1472a30f8f8cSSatish Balay PetscFunctionReturn(0); 1473a30f8f8cSSatish Balay } 1474a30f8f8cSSatish Balay 1475a30f8f8cSSatish Balay #undef __FUNC__ 1476a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatPrintHelp_MPISBAIJ" 1477a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1478a30f8f8cSSatish Balay { 1479a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1480a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1481a30f8f8cSSatish Balay static int called = 0; 1482a30f8f8cSSatish Balay int ierr; 1483a30f8f8cSSatish Balay 1484a30f8f8cSSatish Balay PetscFunctionBegin; 1485a30f8f8cSSatish Balay if (!a->rank) { 1486a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1487a30f8f8cSSatish Balay } 1488a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1489a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1490a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1491a30f8f8cSSatish Balay PetscFunctionReturn(0); 1492a30f8f8cSSatish Balay } 1493a30f8f8cSSatish Balay 1494a30f8f8cSSatish Balay #undef __FUNC__ 1495a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetUnfactored_MPISBAIJ" 1496a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1497a30f8f8cSSatish Balay { 1498*f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1499a30f8f8cSSatish Balay int ierr; 1500a30f8f8cSSatish Balay 1501a30f8f8cSSatish Balay PetscFunctionBegin; 1502a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1503a30f8f8cSSatish Balay PetscFunctionReturn(0); 1504a30f8f8cSSatish Balay } 1505a30f8f8cSSatish Balay 1506a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1507a30f8f8cSSatish Balay 1508a30f8f8cSSatish Balay #undef __FUNC__ 1509a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatEqual_MPISBAIJ" 1510a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1511a30f8f8cSSatish Balay { 1512a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1513a30f8f8cSSatish Balay Mat a,b,c,d; 1514a30f8f8cSSatish Balay PetscTruth flg; 1515a30f8f8cSSatish Balay int ierr; 1516a30f8f8cSSatish Balay 1517a30f8f8cSSatish Balay PetscFunctionBegin; 1518a30f8f8cSSatish Balay if (B->type != MATMPISBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 1519a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1520a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1521a30f8f8cSSatish Balay 1522a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1523a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1524a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1525a30f8f8cSSatish Balay } 1526a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1527a30f8f8cSSatish Balay PetscFunctionReturn(0); 1528a30f8f8cSSatish Balay } 1529a30f8f8cSSatish Balay 1530a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1531a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1532a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1533a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1534a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1535a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1536a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1537a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1538a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1539a30f8f8cSSatish Balay 0, 1540a30f8f8cSSatish Balay 0, 1541a30f8f8cSSatish Balay 0, 1542a30f8f8cSSatish Balay 0, 1543a30f8f8cSSatish Balay 0, 1544a30f8f8cSSatish Balay 0, 1545a30f8f8cSSatish Balay 0, 1546a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1547a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1548a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1549a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1550a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1551a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1552a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1553a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1554a30f8f8cSSatish Balay 0, 1555a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1556a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1557a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1558a30f8f8cSSatish Balay 0, 1559a30f8f8cSSatish Balay 0, 1560a30f8f8cSSatish Balay 0, 1561a30f8f8cSSatish Balay 0, 1562a30f8f8cSSatish Balay MatGetSize_MPISBAIJ, 1563a30f8f8cSSatish Balay MatGetLocalSize_MPISBAIJ, 1564a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1565a30f8f8cSSatish Balay 0, 1566a30f8f8cSSatish Balay 0, 1567a30f8f8cSSatish Balay 0, 1568a30f8f8cSSatish Balay 0, 1569a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1570a30f8f8cSSatish Balay 0, 1571a30f8f8cSSatish Balay 0, 1572a30f8f8cSSatish Balay 0, 1573a30f8f8cSSatish Balay 0, 1574a30f8f8cSSatish Balay 0, 1575a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1576a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1577a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1578a30f8f8cSSatish Balay 0, 1579a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1580a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1581a30f8f8cSSatish Balay 0, 1582a30f8f8cSSatish Balay 0, 1583a30f8f8cSSatish Balay 0, 1584a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1585a30f8f8cSSatish Balay 0, 1586a30f8f8cSSatish Balay 0, 1587a30f8f8cSSatish Balay 0, 1588a30f8f8cSSatish Balay 0, 1589a30f8f8cSSatish Balay 0, 1590a30f8f8cSSatish Balay 0, 1591a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1592a30f8f8cSSatish Balay 0, 1593a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1594a30f8f8cSSatish Balay 0, 1595a30f8f8cSSatish Balay 0, 1596a30f8f8cSSatish Balay 0, 1597a30f8f8cSSatish Balay MatGetMaps_Petsc}; 1598a30f8f8cSSatish Balay 1599a30f8f8cSSatish Balay 1600a30f8f8cSSatish Balay EXTERN_C_BEGIN 1601a30f8f8cSSatish Balay #undef __FUNC__ 1602a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonalBlock_MPISBAIJ" 1603a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1604a30f8f8cSSatish Balay { 1605a30f8f8cSSatish Balay PetscFunctionBegin; 1606a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1607a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1608a30f8f8cSSatish Balay PetscFunctionReturn(0); 1609a30f8f8cSSatish Balay } 1610a30f8f8cSSatish Balay EXTERN_C_END 1611a30f8f8cSSatish Balay 1612a30f8f8cSSatish Balay #undef __FUNC__ 1613a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateMPISBAIJ" 1614a30f8f8cSSatish Balay /*@C 1615a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1616a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1617a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1618a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1619a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1620a30f8f8cSSatish Balay 1621a30f8f8cSSatish Balay Collective on MPI_Comm 1622a30f8f8cSSatish Balay 1623a30f8f8cSSatish Balay Input Parameters: 1624a30f8f8cSSatish Balay + comm - MPI communicator 1625a30f8f8cSSatish Balay . bs - size of blockk 1626a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1627a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1628a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1629a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1630a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1631a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1632a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1633a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1634a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1635a30f8f8cSSatish Balay submatrix (same for all local rows) 1636a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1637a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1638a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1639a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1640a30f8f8cSSatish Balay submatrix (same for all local rows). 1641a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1642a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1643a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1644a30f8f8cSSatish Balay 1645a30f8f8cSSatish Balay Output Parameter: 1646a30f8f8cSSatish Balay . A - the matrix 1647a30f8f8cSSatish Balay 1648a30f8f8cSSatish Balay Options Database Keys: 1649a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1650a30f8f8cSSatish Balay block calculations (much slower) 1651a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1652a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1653a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1654a30f8f8cSSatish Balay 1655a30f8f8cSSatish Balay Notes: 1656a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1657a30f8f8cSSatish Balay (possibly both). 1658a30f8f8cSSatish Balay 1659a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1660a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1661a30f8f8cSSatish Balay 1662a30f8f8cSSatish Balay Storage Information: 1663a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1664a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1665a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1666a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1667a30f8f8cSSatish Balay 1668a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1669a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1670a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1671a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1672a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1673a30f8f8cSSatish Balay 1674a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1675a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1676a30f8f8cSSatish Balay 1677a30f8f8cSSatish Balay .vb 1678a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1679a30f8f8cSSatish Balay ------------------- 1680a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1681a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1682a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1683a30f8f8cSSatish Balay ------------------- 1684a30f8f8cSSatish Balay .ve 1685a30f8f8cSSatish Balay 1686a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1687a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1688a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1689a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1690a30f8f8cSSatish Balay 1691a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1692a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1693a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1694a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1695a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1696a30f8f8cSSatish Balay matrices. 1697a30f8f8cSSatish Balay 1698a30f8f8cSSatish Balay Level: intermediate 1699a30f8f8cSSatish Balay 1700a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1701a30f8f8cSSatish Balay 1702a30f8f8cSSatish Balay .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPISBAIJ() 1703a30f8f8cSSatish Balay @*/ 1704a30f8f8cSSatish Balay 1705a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1706a30f8f8cSSatish Balay { 1707a30f8f8cSSatish Balay Mat B; 1708a30f8f8cSSatish Balay Mat_MPISBAIJ *b; 1709f65c83cfSHong Zhang int ierr,i,sum[1],work[1],mbs,Mbs=PETSC_DECIDE,size; 1710a30f8f8cSSatish Balay PetscTruth flag1,flag2,flg; 1711a30f8f8cSSatish Balay 1712a30f8f8cSSatish Balay PetscFunctionBegin; 1713a30f8f8cSSatish Balay if (M != N || m != n){ /* N and n are not used after this */ 1714a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"For symmetric format, set M=N and m=n"); 1715a30f8f8cSSatish Balay } 1716a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1717a30f8f8cSSatish Balay 1718a30f8f8cSSatish Balay if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 1719a30f8f8cSSatish Balay if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -2: value %d",d_nz); 1720a30f8f8cSSatish Balay if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -2: value %d",o_nz); 1721a30f8f8cSSatish Balay if (d_nnz) { 1722a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 1723a30f8f8cSSatish Balay if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1724a30f8f8cSSatish Balay } 1725a30f8f8cSSatish Balay } 1726a30f8f8cSSatish Balay if (o_nnz) { 1727a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 1728a30f8f8cSSatish Balay if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1729a30f8f8cSSatish Balay } 1730a30f8f8cSSatish Balay } 1731a30f8f8cSSatish Balay 1732a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1733a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpisbaij",&flag1);CHKERRQ(ierr); 1734a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 1735a30f8f8cSSatish Balay if (!flag1 && !flag2 && size == 1) { 1736a30f8f8cSSatish Balay if (M == PETSC_DECIDE) M = m; 1737a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(comm,bs,M,M,d_nz,d_nnz,A);CHKERRQ(ierr); 1738a30f8f8cSSatish Balay PetscFunctionReturn(0); 1739a30f8f8cSSatish Balay } 1740a30f8f8cSSatish Balay 1741a30f8f8cSSatish Balay *A = 0; 1742a30f8f8cSSatish Balay PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",comm,MatDestroy,MatView); 1743a30f8f8cSSatish Balay PLogObjectCreate(B); 1744a30f8f8cSSatish Balay B->data = (void*)(b = PetscNew(Mat_MPISBAIJ));CHKPTRQ(b); 1745a30f8f8cSSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1746a30f8f8cSSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1747a30f8f8cSSatish Balay 1748a30f8f8cSSatish Balay B->ops->destroy = MatDestroy_MPISBAIJ; 1749a30f8f8cSSatish Balay B->ops->view = MatView_MPISBAIJ; 1750a30f8f8cSSatish Balay B->mapping = 0; 1751a30f8f8cSSatish Balay B->factor = 0; 1752a30f8f8cSSatish Balay B->assembled = PETSC_FALSE; 1753a30f8f8cSSatish Balay 1754a30f8f8cSSatish Balay B->insertmode = NOT_SET_VALUES; 1755a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 1756a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 1757a30f8f8cSSatish Balay 1758a30f8f8cSSatish Balay if (m == PETSC_DECIDE && (d_nnz || o_nnz)) { 1759a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1760a30f8f8cSSatish Balay } 1761a30f8f8cSSatish Balay if (M == PETSC_DECIDE && m == PETSC_DECIDE) { 1762a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 1763a30f8f8cSSatish Balay } 1764a30f8f8cSSatish Balay if (M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1765a30f8f8cSSatish Balay 1766a30f8f8cSSatish Balay if (M == PETSC_DECIDE) { 1767a30f8f8cSSatish Balay work[0] = m; mbs = m/bs; 1768a30f8f8cSSatish Balay ierr = MPI_Allreduce(work,sum,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 1769a30f8f8cSSatish Balay M = sum[0]; Mbs = M/bs; 1770a30f8f8cSSatish Balay } else { /* M is specified */ 1771a30f8f8cSSatish Balay Mbs = M/bs; 1772a30f8f8cSSatish Balay if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 1773a30f8f8cSSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 1774a30f8f8cSSatish Balay m = mbs*bs; 1775a30f8f8cSSatish Balay } 1776a30f8f8cSSatish Balay 1777a30f8f8cSSatish Balay if (mbs*bs != m) { 1778a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows/cols must be divisible by blocksize"); 1779a30f8f8cSSatish Balay } 1780a30f8f8cSSatish Balay 1781a30f8f8cSSatish Balay b->m = m; B->m = m; 1782a30f8f8cSSatish Balay b->n = m; B->n = m; 1783a30f8f8cSSatish Balay b->N = M; B->N = M; 1784a30f8f8cSSatish Balay b->M = M; 1785a30f8f8cSSatish Balay B->M = M; 1786a30f8f8cSSatish Balay b->bs = bs; 1787a30f8f8cSSatish Balay b->bs2 = bs*bs; 1788a30f8f8cSSatish Balay b->mbs = mbs; 1789a30f8f8cSSatish Balay b->nbs = mbs; 1790a30f8f8cSSatish Balay b->Mbs = Mbs; 1791a30f8f8cSSatish Balay b->Nbs = Mbs; 1792a30f8f8cSSatish Balay 1793a30f8f8cSSatish Balay /* the information in the maps duplicates the information computed below, eventually 1794a30f8f8cSSatish Balay we should remove the duplicate information that is not contained in the maps */ 1795a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->rmap);CHKERRQ(ierr); 1796a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->cmap);CHKERRQ(ierr); 1797a30f8f8cSSatish Balay 1798a30f8f8cSSatish Balay /* build local table of row and column ownerships */ 1799a30f8f8cSSatish Balay b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 1800a30f8f8cSSatish Balay PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1801a30f8f8cSSatish Balay b->cowners = b->rowners + b->size + 2; 1802a30f8f8cSSatish Balay b->rowners_bs = b->cowners + b->size + 2; 1803a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1804a30f8f8cSSatish Balay b->rowners[0] = 0; 1805a30f8f8cSSatish Balay for (i=2; i<=b->size; i++) { 1806a30f8f8cSSatish Balay b->rowners[i] += b->rowners[i-1]; 1807a30f8f8cSSatish Balay } 1808a30f8f8cSSatish Balay for (i=0; i<=b->size; i++) { 1809a30f8f8cSSatish Balay b->rowners_bs[i] = b->rowners[i]*bs; 1810a30f8f8cSSatish Balay } 1811a30f8f8cSSatish Balay b->rstart = b->rowners[b->rank]; 1812a30f8f8cSSatish Balay b->rend = b->rowners[b->rank+1]; 1813a30f8f8cSSatish Balay b->rstart_bs = b->rstart * bs; 1814a30f8f8cSSatish Balay b->rend_bs = b->rend * bs; 1815a30f8f8cSSatish Balay 1816a30f8f8cSSatish Balay b->cstart = b->rstart; 1817a30f8f8cSSatish Balay b->cend = b->rend; 1818a30f8f8cSSatish Balay b->cstart_bs = b->cstart * bs; 1819a30f8f8cSSatish Balay b->cend_bs = b->cend * bs; 1820a30f8f8cSSatish Balay 1821a30f8f8cSSatish Balay 1822a30f8f8cSSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 1823a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,m,m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1824a30f8f8cSSatish Balay PLogObjectParent(B,b->A); 1825a30f8f8cSSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 1826a30f8f8cSSatish Balay ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1827a30f8f8cSSatish Balay PLogObjectParent(B,b->B); 1828a30f8f8cSSatish Balay 1829a30f8f8cSSatish Balay /* build cache for off array entries formed */ 1830a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1831a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1832a30f8f8cSSatish Balay b->donotstash = PETSC_FALSE; 1833a30f8f8cSSatish Balay b->colmap = PETSC_NULL; 1834a30f8f8cSSatish Balay b->garray = PETSC_NULL; 1835a30f8f8cSSatish Balay b->roworiented = PETSC_TRUE; 1836a30f8f8cSSatish Balay 1837a30f8f8cSSatish Balay #if defined(PEYSC_USE_MAT_SINGLE) 1838a30f8f8cSSatish Balay /* stuff for MatSetValues_XXX in single precision */ 1839a30f8f8cSSatish Balay b->lensetvalues = 0; 1840a30f8f8cSSatish Balay b->setvaluescopy = PETSC_NULL; 1841a30f8f8cSSatish Balay #endif 1842a30f8f8cSSatish Balay 1843a30f8f8cSSatish Balay /* stuff used in block assembly */ 1844a30f8f8cSSatish Balay b->barray = 0; 1845a30f8f8cSSatish Balay 1846a30f8f8cSSatish Balay /* stuff used for matrix vector multiply */ 1847a30f8f8cSSatish Balay b->lvec = 0; 1848a30f8f8cSSatish Balay b->Mvctx = 0; 1849a30f8f8cSSatish Balay 1850a30f8f8cSSatish Balay /* stuff for MatGetRow() */ 1851a30f8f8cSSatish Balay b->rowindices = 0; 1852a30f8f8cSSatish Balay b->rowvalues = 0; 1853a30f8f8cSSatish Balay b->getrowactive = PETSC_FALSE; 1854a30f8f8cSSatish Balay 1855a30f8f8cSSatish Balay /* hash table stuff */ 1856a30f8f8cSSatish Balay b->ht = 0; 1857a30f8f8cSSatish Balay b->hd = 0; 1858a30f8f8cSSatish Balay b->ht_size = 0; 1859a30f8f8cSSatish Balay b->ht_flag = PETSC_FALSE; 1860a30f8f8cSSatish Balay b->ht_fact = 0; 1861a30f8f8cSSatish Balay b->ht_total_ct = 0; 1862a30f8f8cSSatish Balay b->ht_insert_ct = 0; 1863a30f8f8cSSatish Balay 1864a30f8f8cSSatish Balay *A = B; 1865a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1866a30f8f8cSSatish Balay if (flg) { 1867a30f8f8cSSatish Balay double fact = 1.39; 1868a30f8f8cSSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1869a30f8f8cSSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1870a30f8f8cSSatish Balay if (fact <= 1.0) fact = 1.39; 1871a30f8f8cSSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1872a30f8f8cSSatish Balay PLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1873a30f8f8cSSatish Balay } 1874a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1875a30f8f8cSSatish Balay "MatStoreValues_MPISBAIJ", 1876a30f8f8cSSatish Balay MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1877a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1878a30f8f8cSSatish Balay "MatRetrieveValues_MPISBAIJ", 1879a30f8f8cSSatish Balay MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1880a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1881a30f8f8cSSatish Balay "MatGetDiagonalBlock_MPISBAIJ", 1882a30f8f8cSSatish Balay MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1883a30f8f8cSSatish Balay PetscFunctionReturn(0); 1884a30f8f8cSSatish Balay } 1885a30f8f8cSSatish Balay 1886a30f8f8cSSatish Balay 1887a30f8f8cSSatish Balay #undef __FUNC__ 1888a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDuplicate_MPISBAIJ" 1889a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1890a30f8f8cSSatish Balay { 1891a30f8f8cSSatish Balay Mat mat; 1892a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1893a30f8f8cSSatish Balay int ierr,len=0; 1894a30f8f8cSSatish Balay PetscTruth flg; 1895a30f8f8cSSatish Balay 1896a30f8f8cSSatish Balay PetscFunctionBegin; 1897a30f8f8cSSatish Balay *newmat = 0; 1898a30f8f8cSSatish Balay PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",matin->comm,MatDestroy,MatView); 1899a30f8f8cSSatish Balay PLogObjectCreate(mat); 1900a30f8f8cSSatish Balay mat->data = (void*)(a = PetscNew(Mat_MPISBAIJ));CHKPTRQ(a); 1901a30f8f8cSSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1902a30f8f8cSSatish Balay mat->ops->destroy = MatDestroy_MPISBAIJ; 1903a30f8f8cSSatish Balay mat->ops->view = MatView_MPISBAIJ; 1904a30f8f8cSSatish Balay mat->factor = matin->factor; 1905a30f8f8cSSatish Balay mat->assembled = PETSC_TRUE; 1906a30f8f8cSSatish Balay mat->insertmode = NOT_SET_VALUES; 1907a30f8f8cSSatish Balay 1908a30f8f8cSSatish Balay a->m = mat->m = oldmat->m; 1909a30f8f8cSSatish Balay a->n = mat->n = oldmat->n; 1910a30f8f8cSSatish Balay a->M = mat->M = oldmat->M; 1911a30f8f8cSSatish Balay a->N = mat->N = oldmat->N; 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay a->bs = oldmat->bs; 1914a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1915a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1916a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1917a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1918a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1919a30f8f8cSSatish Balay 1920a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1921a30f8f8cSSatish Balay a->rend = oldmat->rend; 1922a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1923a30f8f8cSSatish Balay a->cend = oldmat->cend; 1924a30f8f8cSSatish Balay a->size = oldmat->size; 1925a30f8f8cSSatish Balay a->rank = oldmat->rank; 1926a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1927a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1928a30f8f8cSSatish Balay a->rowindices = 0; 1929a30f8f8cSSatish Balay a->rowvalues = 0; 1930a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1931a30f8f8cSSatish Balay a->barray = 0; 1932a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1933a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1934a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1935a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1936a30f8f8cSSatish Balay 1937a30f8f8cSSatish Balay /* hash table stuff */ 1938a30f8f8cSSatish Balay a->ht = 0; 1939a30f8f8cSSatish Balay a->hd = 0; 1940a30f8f8cSSatish Balay a->ht_size = 0; 1941a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1942a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1943a30f8f8cSSatish Balay a->ht_total_ct = 0; 1944a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1945a30f8f8cSSatish Balay 1946a30f8f8cSSatish Balay 1947a30f8f8cSSatish Balay a->rowners = (int*)PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 1948a30f8f8cSSatish Balay PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1949a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1950a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1951a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1952a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1953a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1954a30f8f8cSSatish Balay if (oldmat->colmap) { 1955a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1956a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1957a30f8f8cSSatish Balay #else 1958a30f8f8cSSatish Balay a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 1959a30f8f8cSSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1960a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1961a30f8f8cSSatish Balay #endif 1962a30f8f8cSSatish Balay } else a->colmap = 0; 1963a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 1964a30f8f8cSSatish Balay a->garray = (int*)PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 1965a30f8f8cSSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 1966a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1967a30f8f8cSSatish Balay } else a->garray = 0; 1968a30f8f8cSSatish Balay 1969a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1970a30f8f8cSSatish Balay PLogObjectParent(mat,a->lvec); 1971a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1972a30f8f8cSSatish Balay 1973a30f8f8cSSatish Balay PLogObjectParent(mat,a->Mvctx); 1974a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1975a30f8f8cSSatish Balay PLogObjectParent(mat,a->A); 1976a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1977a30f8f8cSSatish Balay PLogObjectParent(mat,a->B); 1978a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 1979a30f8f8cSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1980a30f8f8cSSatish Balay if (flg) { 1981a30f8f8cSSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 1982a30f8f8cSSatish Balay } 1983a30f8f8cSSatish Balay *newmat = mat; 1984a30f8f8cSSatish Balay PetscFunctionReturn(0); 1985a30f8f8cSSatish Balay } 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay #include "petscsys.h" 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay #undef __FUNC__ 1990a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatLoad_MPISBAIJ" 1991a30f8f8cSSatish Balay int MatLoad_MPISBAIJ(Viewer viewer,MatType type,Mat *newmat) 1992a30f8f8cSSatish Balay { 1993a30f8f8cSSatish Balay Mat A; 1994a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1995a30f8f8cSSatish Balay Scalar *vals,*buf; 1996a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1997a30f8f8cSSatish Balay MPI_Status status; 1998a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1999a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2000a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2001a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2002a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 2003a30f8f8cSSatish Balay 2004a30f8f8cSSatish Balay PetscFunctionBegin; 2005a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2006a30f8f8cSSatish Balay 2007a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2008a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2009a30f8f8cSSatish Balay if (!rank) { 2010a30f8f8cSSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2011a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2012a30f8f8cSSatish Balay if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2013a30f8f8cSSatish Balay if (header[3] < 0) { 2014a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPISBAIJ"); 2015a30f8f8cSSatish Balay } 2016a30f8f8cSSatish Balay } 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 2019a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2020a30f8f8cSSatish Balay 2021a30f8f8cSSatish Balay if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 2022a30f8f8cSSatish Balay 2023a30f8f8cSSatish Balay /* 2024a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2025a30f8f8cSSatish Balay divisible by the blocksize 2026a30f8f8cSSatish Balay */ 2027a30f8f8cSSatish Balay Mbs = M/bs; 2028a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2029a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2030a30f8f8cSSatish Balay else Mbs++; 2031a30f8f8cSSatish Balay if (extra_rows &&!rank) { 2032a30f8f8cSSatish Balay PLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 2033a30f8f8cSSatish Balay } 2034a30f8f8cSSatish Balay 2035a30f8f8cSSatish Balay /* determine ownership of all rows */ 2036a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2037a30f8f8cSSatish Balay m = mbs * bs; 2038a30f8f8cSSatish Balay rowners = (int*)PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 2039a30f8f8cSSatish Balay browners = rowners + size + 1; 2040a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2041a30f8f8cSSatish Balay rowners[0] = 0; 2042a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2043a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2044a30f8f8cSSatish Balay rstart = rowners[rank]; 2045a30f8f8cSSatish Balay rend = rowners[rank+1]; 2046a30f8f8cSSatish Balay 2047a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 2048a30f8f8cSSatish Balay locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKPTRQ(locrowlens); 2049a30f8f8cSSatish Balay if (!rank) { 2050a30f8f8cSSatish Balay rowlengths = (int*)PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 2051a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2052a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2053a30f8f8cSSatish Balay sndcounts = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(sndcounts); 2054a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2055a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2056a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2057a30f8f8cSSatish Balay } else { 2058a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2059a30f8f8cSSatish Balay } 2060a30f8f8cSSatish Balay 20610222edb1SHong Zhang if (!rank) { /* procs[0] */ 2062a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 2063a30f8f8cSSatish Balay procsnz = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(procsnz); 2064a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2065a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2066a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2067a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2068a30f8f8cSSatish Balay } 2069a30f8f8cSSatish Balay } 2070a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2071a30f8f8cSSatish Balay 2072a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2073a30f8f8cSSatish Balay maxnz = 0; 2074a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2075a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2076a30f8f8cSSatish Balay } 2077a30f8f8cSSatish Balay cols = (int*)PetscMalloc(maxnz*sizeof(int));CHKPTRQ(cols); 2078a30f8f8cSSatish Balay 2079a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2080a30f8f8cSSatish Balay nz = procsnz[0]; 2081a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2082a30f8f8cSSatish Balay mycols = ibuf; 2083a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2084a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2085a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2086a30f8f8cSSatish Balay 2087a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2088a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2089a30f8f8cSSatish Balay nz = procsnz[i]; 2090a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2091a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2092a30f8f8cSSatish Balay } 2093a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2094a30f8f8cSSatish Balay if (size != 1) { 2095a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2096a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2097a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2098a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2099a30f8f8cSSatish Balay } 2100a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 21010222edb1SHong Zhang } else { /* procs[i], i>0 */ 2102a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2103a30f8f8cSSatish Balay nz = 0; 2104a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2105a30f8f8cSSatish Balay nz += locrowlens[i]; 2106a30f8f8cSSatish Balay } 2107a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2108a30f8f8cSSatish Balay mycols = ibuf; 2109a30f8f8cSSatish Balay /* receive message of column indices*/ 2110a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2111a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2112a30f8f8cSSatish Balay if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 2113a30f8f8cSSatish Balay } 2114a30f8f8cSSatish Balay 2115a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2116a30f8f8cSSatish Balay dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKPTRQ(dlens); 2117a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 2118a30f8f8cSSatish Balay mask = (int*)PetscMalloc(3*Mbs*sizeof(int));CHKPTRQ(mask); 2119a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2120a30f8f8cSSatish Balay masked1 = mask + Mbs; 2121a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2122a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2123a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2124a30f8f8cSSatish Balay dcount = 0; 2125a30f8f8cSSatish Balay odcount = 0; 2126a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2127a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2128a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 21290222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2130a30f8f8cSSatish Balay if (!mask[tmp]) { 2131a30f8f8cSSatish Balay mask[tmp] = 1; 21320222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 21330222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2134a30f8f8cSSatish Balay } 2135a30f8f8cSSatish Balay } 2136a30f8f8cSSatish Balay rowcount++; 2137a30f8f8cSSatish Balay } 2138a30f8f8cSSatish Balay 21390222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 21400222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2141a30f8f8cSSatish Balay 2142a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2143a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2144a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2145a30f8f8cSSatish Balay } 2146a30f8f8cSSatish Balay 2147a30f8f8cSSatish Balay /* create our matrix */ 21487e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2149bfe19f1aSHong Zhang CHKERRQ(ierr); 2150a30f8f8cSSatish Balay A = *newmat; 2151a30f8f8cSSatish Balay MatSetOption(A,MAT_COLUMNS_SORTED); 2152a30f8f8cSSatish Balay 2153a30f8f8cSSatish Balay if (!rank) { 2154a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(maxnz*sizeof(Scalar));CHKPTRQ(buf); 2155a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2156a30f8f8cSSatish Balay nz = procsnz[0]; 2157a30f8f8cSSatish Balay vals = buf; 2158a30f8f8cSSatish Balay mycols = ibuf; 2159a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2160a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2161a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2162a30f8f8cSSatish Balay 2163a30f8f8cSSatish Balay /* insert into matrix */ 2164a30f8f8cSSatish Balay jj = rstart*bs; 2165a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21667e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2167a30f8f8cSSatish Balay mycols += locrowlens[i]; 2168a30f8f8cSSatish Balay vals += locrowlens[i]; 2169a30f8f8cSSatish Balay jj++; 2170a30f8f8cSSatish Balay } 21717e06b45fSHong Zhang 2172a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2173a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2174a30f8f8cSSatish Balay nz = procsnz[i]; 2175a30f8f8cSSatish Balay vals = buf; 2176a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2177a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2178a30f8f8cSSatish Balay } 2179a30f8f8cSSatish Balay /* the last proc */ 2180a30f8f8cSSatish Balay if (size != 1){ 2181a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2182a30f8f8cSSatish Balay vals = buf; 2183a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2184a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2185a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2186a30f8f8cSSatish Balay } 2187a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21887e06b45fSHong Zhang 2189a30f8f8cSSatish Balay } else { 2190a30f8f8cSSatish Balay /* receive numeric values */ 2191a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(nz*sizeof(Scalar));CHKPTRQ(buf); 2192a30f8f8cSSatish Balay 2193a30f8f8cSSatish Balay /* receive message of values*/ 2194a30f8f8cSSatish Balay vals = buf; 2195a30f8f8cSSatish Balay mycols = ibuf; 2196a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2197a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2198a30f8f8cSSatish Balay if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 2199a30f8f8cSSatish Balay 2200a30f8f8cSSatish Balay /* insert into matrix */ 2201a30f8f8cSSatish Balay jj = rstart*bs; 2202a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2203a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2204a30f8f8cSSatish Balay mycols += locrowlens[i]; 2205a30f8f8cSSatish Balay vals += locrowlens[i]; 2206a30f8f8cSSatish Balay jj++; 2207a30f8f8cSSatish Balay } 2208a30f8f8cSSatish Balay } 22097e06b45fSHong Zhang 2210a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2211a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2212a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2213a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2215a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2216a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2217a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2218a30f8f8cSSatish Balay PetscFunctionReturn(0); 2219a30f8f8cSSatish Balay } 2220a30f8f8cSSatish Balay 2221a30f8f8cSSatish Balay #undef __FUNC__ 2222a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMPISBAIJSetHashTableFactor" 2223a30f8f8cSSatish Balay /*@ 2224a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2225a30f8f8cSSatish Balay 2226a30f8f8cSSatish Balay Input Parameters: 2227a30f8f8cSSatish Balay . mat - the matrix 2228a30f8f8cSSatish Balay . fact - factor 2229a30f8f8cSSatish Balay 2230a30f8f8cSSatish Balay Collective on Mat 2231a30f8f8cSSatish Balay 2232a30f8f8cSSatish Balay Level: advanced 2233a30f8f8cSSatish Balay 2234a30f8f8cSSatish Balay Notes: 2235a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2236a30f8f8cSSatish Balay 2237a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2238a30f8f8cSSatish Balay 2239a30f8f8cSSatish Balay .seealso: MatSetOption() 2240a30f8f8cSSatish Balay @*/ 2241a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2242a30f8f8cSSatish Balay { 2243a30f8f8cSSatish Balay Mat_MPIBAIJ *baij; 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay PetscFunctionBegin; 2246*f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 2247a30f8f8cSSatish Balay PetscFunctionReturn(0); 2248a30f8f8cSSatish Balay } 2249