1be1d678aSKris Buschelman #define PETSCMAT_DLL 2a30f8f8cSSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "mpisbaij.h" 57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h" 6a30f8f8cSSatish Balay 7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat); 101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*); 19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *); 20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 23a30f8f8cSSatish Balay EXTERN_C_BEGIN 244a2ae208SSatish Balay #undef __FUNCT__ 254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat) 27a30f8f8cSSatish Balay { 28f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 29dfbe8321SBarry Smith PetscErrorCode ierr; 30a30f8f8cSSatish Balay 31a30f8f8cSSatish Balay PetscFunctionBegin; 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 33a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 34a30f8f8cSSatish Balay PetscFunctionReturn(0); 35a30f8f8cSSatish Balay } 36a30f8f8cSSatish Balay EXTERN_C_END 37a30f8f8cSSatish Balay 38a30f8f8cSSatish Balay EXTERN_C_BEGIN 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat) 42a30f8f8cSSatish Balay { 43f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 44dfbe8321SBarry Smith PetscErrorCode ierr; 45a30f8f8cSSatish Balay 46a30f8f8cSSatish Balay PetscFunctionBegin; 47a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 48a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 49a30f8f8cSSatish Balay PetscFunctionReturn(0); 50a30f8f8cSSatish Balay } 51a30f8f8cSSatish Balay EXTERN_C_END 52a30f8f8cSSatish Balay 53a30f8f8cSSatish Balay 54a30f8f8cSSatish Balay #define CHUNKSIZE 10 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 57a30f8f8cSSatish Balay { \ 58a30f8f8cSSatish Balay \ 59a30f8f8cSSatish Balay brow = row/bs; \ 60a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 61a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 62a30f8f8cSSatish Balay bcol = col/bs; \ 63a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 64a30f8f8cSSatish Balay low = 0; high = nrow; \ 65a30f8f8cSSatish Balay while (high-low > 3) { \ 66a30f8f8cSSatish Balay t = (low+high)/2; \ 67a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 68a30f8f8cSSatish Balay else low = t; \ 69a30f8f8cSSatish Balay } \ 70a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 71a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 72a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 73a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 74a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 75a30f8f8cSSatish Balay else *bap = value; \ 76a30f8f8cSSatish Balay goto a_noinsert; \ 77a30f8f8cSSatish Balay } \ 78a30f8f8cSSatish Balay } \ 79a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 80085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 81421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 82a30f8f8cSSatish Balay N = nrow++ - 1; \ 83a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 84a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 85a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 86a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 87a30f8f8cSSatish Balay } \ 88a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 89a30f8f8cSSatish Balay rp[_i] = bcol; \ 90a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 91a30f8f8cSSatish Balay a_noinsert:; \ 92a30f8f8cSSatish Balay ailen[brow] = nrow; \ 93a30f8f8cSSatish Balay } 94e5e170daSBarry Smith 95a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 96a30f8f8cSSatish Balay { \ 97a30f8f8cSSatish Balay brow = row/bs; \ 98a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 99a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 100a30f8f8cSSatish Balay bcol = col/bs; \ 101a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 102a30f8f8cSSatish Balay low = 0; high = nrow; \ 103a30f8f8cSSatish Balay while (high-low > 3) { \ 104a30f8f8cSSatish Balay t = (low+high)/2; \ 105a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 106a30f8f8cSSatish Balay else low = t; \ 107a30f8f8cSSatish Balay } \ 108a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 109a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 110a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 111a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 112a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 113a30f8f8cSSatish Balay else *bap = value; \ 114a30f8f8cSSatish Balay goto b_noinsert; \ 115a30f8f8cSSatish Balay } \ 116a30f8f8cSSatish Balay } \ 117a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 118085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 119421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 120a30f8f8cSSatish Balay N = nrow++ - 1; \ 121a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 122a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 123a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 124a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 125a30f8f8cSSatish Balay } \ 126a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 127a30f8f8cSSatish Balay rp[_i] = bcol; \ 128a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 129a30f8f8cSSatish Balay b_noinsert:; \ 130a30f8f8cSSatish Balay bilen[brow] = nrow; \ 131a30f8f8cSSatish Balay } 132a30f8f8cSSatish Balay 133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 134a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 135a30f8f8cSSatish Balay */ 1364a2ae208SSatish Balay #undef __FUNCT__ 137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 139a30f8f8cSSatish Balay { 140a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 141a30f8f8cSSatish Balay MatScalar value; 142b5df2d14SHong Zhang PetscTruth roworiented = baij->roworiented; 143dfbe8321SBarry Smith PetscErrorCode ierr; 1441302d50aSBarry Smith PetscInt i,j,row,col; 145d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 146d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 147d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 148a30f8f8cSSatish Balay 149a30f8f8cSSatish Balay /* Some Variables required in the macro */ 150a30f8f8cSSatish Balay Mat A = baij->A; 151a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1521302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 153a30f8f8cSSatish Balay MatScalar *aa=a->a; 154a30f8f8cSSatish Balay 155a30f8f8cSSatish Balay Mat B = baij->B; 156a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1571302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 158a30f8f8cSSatish Balay MatScalar *ba=b->a; 159a30f8f8cSSatish Balay 1601302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1611302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 162a30f8f8cSSatish Balay MatScalar *ap,*bap; 163a30f8f8cSSatish Balay 164a30f8f8cSSatish Balay /* for stash */ 165910ba992SMatthew Knepley PetscInt n_loc, *in_loc = PETSC_NULL; 166910ba992SMatthew Knepley MatScalar *v_loc = PETSC_NULL; 167a30f8f8cSSatish Balay 168a30f8f8cSSatish Balay PetscFunctionBegin; 16971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 170a30f8f8cSSatish Balay if (!baij->donotstash){ 17159ffdab8SBarry Smith if (n > baij->n_loc) { 17259ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 17359ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 17459ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 17559ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 17659ffdab8SBarry Smith baij->n_loc = n; 17759ffdab8SBarry Smith } 17859ffdab8SBarry Smith in_loc = baij->in_loc; 17959ffdab8SBarry Smith v_loc = baij->v_loc; 180a30f8f8cSSatish Balay } 181a30f8f8cSSatish Balay 182a30f8f8cSSatish Balay for (i=0; i<m; i++) { 183a30f8f8cSSatish Balay if (im[i] < 0) continue; 1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 185d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 186a30f8f8cSSatish Balay #endif 187a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 188a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 189a30f8f8cSSatish Balay for (j=0; j<n; j++) { 19001b2bd88SHong Zhang if (im[i]/bs > in[j]/bs){ 19101b2bd88SHong Zhang if (a->ignore_ltriangular){ 19201b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 19301b2bd88SHong Zhang } else { 1944e0d8c25SBarry Smith SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 19501b2bd88SHong Zhang } 19601b2bd88SHong Zhang } 197a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 198a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 199a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 200a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 201a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 202a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 203a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 204a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 206d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);} 207a30f8f8cSSatish Balay #endif 208a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 209a30f8f8cSSatish Balay if (mat->was_assembled) { 210a30f8f8cSSatish Balay if (!baij->colmap) { 211653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212a30f8f8cSSatish Balay } 213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 214a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 21571730473SSatish Balay col = col - 1; 216a30f8f8cSSatish Balay #else 21771730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 218a30f8f8cSSatish Balay #endif 219a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 220a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 221a30f8f8cSSatish Balay col = in[j]; 222a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 223a30f8f8cSSatish Balay B = baij->B; 224a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 225a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 226a30f8f8cSSatish Balay ba=b->a; 22771730473SSatish Balay } else col += in[j]%bs; 228a30f8f8cSSatish Balay } else col = in[j]; 229a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 231a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232a30f8f8cSSatish Balay } 233a30f8f8cSSatish Balay } 234a30f8f8cSSatish Balay } else { /* off processor entry */ 235a30f8f8cSSatish Balay if (!baij->donotstash) { 236a30f8f8cSSatish Balay n_loc = 0; 237a30f8f8cSSatish Balay for (j=0; j<n; j++){ 238f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 239a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 240a30f8f8cSSatish Balay if (roworiented) { 241a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 242a30f8f8cSSatish Balay } else { 243a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay n_loc++; 246a30f8f8cSSatish Balay } 247b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay } 250a30f8f8cSSatish Balay } 251a30f8f8cSSatish Balay PetscFunctionReturn(0); 252a30f8f8cSSatish Balay } 253a30f8f8cSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 257a30f8f8cSSatish Balay { 2580880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 259f15d580aSBarry Smith const MatScalar *value; 260f15d580aSBarry Smith MatScalar *barray=baij->barray; 261*f3f98c53SJed Brown PetscTruth roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 262dfbe8321SBarry Smith PetscErrorCode ierr; 263899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 264899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 265d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2660880e062SHong Zhang 267a30f8f8cSSatish Balay PetscFunctionBegin; 2680880e062SHong Zhang if(!barray) { 2690880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2700880e062SHong Zhang baij->barray = barray; 2710880e062SHong Zhang } 2720880e062SHong Zhang 2730880e062SHong Zhang if (roworiented) { 2740880e062SHong Zhang stepval = (n-1)*bs; 2750880e062SHong Zhang } else { 2760880e062SHong Zhang stepval = (m-1)*bs; 2770880e062SHong Zhang } 2780880e062SHong Zhang for (i=0; i<m; i++) { 2790880e062SHong Zhang if (im[i] < 0) continue; 2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 28177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2820880e062SHong Zhang #endif 2830880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2840880e062SHong Zhang row = im[i] - rstart; 2850880e062SHong Zhang for (j=0; j<n; j++) { 286*f3f98c53SJed Brown if (im[i] > in[j]) { 287*f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 288*f3f98c53SJed Brown else SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 289*f3f98c53SJed Brown } 2900880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2910880e062SHong Zhang if ((roworiented) && (n == 1)) { 292f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2930880e062SHong Zhang } else if((!roworiented) && (m == 1)) { 294f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2950880e062SHong Zhang } else { /* Here a copy is required */ 2960880e062SHong Zhang if (roworiented) { 2970880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2980880e062SHong Zhang } else { 2990880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 3000880e062SHong Zhang } 3010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 3020880e062SHong Zhang for (jj=0; jj<bs; jj++) { 3030880e062SHong Zhang *barray++ = *value++; 3040880e062SHong Zhang } 3050880e062SHong Zhang } 3060880e062SHong Zhang barray -=bs2; 3070880e062SHong Zhang } 3080880e062SHong Zhang 3090880e062SHong Zhang if (in[j] >= cstart && in[j] < cend){ 3100880e062SHong Zhang col = in[j] - cstart; 3110880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3120880e062SHong Zhang } 3130880e062SHong Zhang else if (in[j] < 0) continue; 3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 31577431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 3160880e062SHong Zhang #endif 3170880e062SHong Zhang else { 3180880e062SHong Zhang if (mat->was_assembled) { 3190880e062SHong Zhang if (!baij->colmap) { 320653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3210880e062SHong Zhang } 3220880e062SHong Zhang 3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3251302d50aSBarry Smith { PetscInt data; 3260880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3270880e062SHong Zhang if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3280880e062SHong Zhang } 3290880e062SHong Zhang #else 3300880e062SHong Zhang if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 3310880e062SHong Zhang #endif 3320880e062SHong Zhang #endif 3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE) 3340880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3350880e062SHong Zhang col = (col - 1)/bs; 3360880e062SHong Zhang #else 3370880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3380880e062SHong Zhang #endif 3390880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3400880e062SHong Zhang ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3410880e062SHong Zhang col = in[j]; 3420880e062SHong Zhang } 3430880e062SHong Zhang } 3440880e062SHong Zhang else col = in[j]; 345e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3460880e062SHong Zhang } 3470880e062SHong Zhang } 3480880e062SHong Zhang } else { 3490880e062SHong Zhang if (!baij->donotstash) { 3500880e062SHong Zhang if (roworiented) { 3510880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3520880e062SHong Zhang } else { 3530880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3540880e062SHong Zhang } 3550880e062SHong Zhang } 3560880e062SHong Zhang } 3570880e062SHong Zhang } 3580880e062SHong Zhang PetscFunctionReturn(0); 359a30f8f8cSSatish Balay } 360a30f8f8cSSatish Balay 3614a2ae208SSatish Balay #undef __FUNCT__ 3624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3631302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 364a30f8f8cSSatish Balay { 365f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3666849ba73SBarry Smith PetscErrorCode ierr; 367d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 368d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 369a30f8f8cSSatish Balay 370a30f8f8cSSatish Balay PetscFunctionBegin; 371a30f8f8cSSatish Balay for (i=0; i<m; i++) { 37297e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 373d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 374a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 375a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 376a30f8f8cSSatish Balay for (j=0; j<n; j++) { 37797e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 378d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 379a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 380a30f8f8cSSatish Balay col = idxn[j] - bscstart; 381c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 382a30f8f8cSSatish Balay } else { 383a30f8f8cSSatish Balay if (!baij->colmap) { 384653e4784SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 385a30f8f8cSSatish Balay } 386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 387a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 388a30f8f8cSSatish Balay data --; 389a30f8f8cSSatish Balay #else 390a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 391a30f8f8cSSatish Balay #endif 392a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 393a30f8f8cSSatish Balay else { 394a30f8f8cSSatish Balay col = data + idxn[j]%bs; 395e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 396a30f8f8cSSatish Balay } 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } else { 40029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay } 403a30f8f8cSSatish Balay PetscFunctionReturn(0); 404a30f8f8cSSatish Balay } 405a30f8f8cSSatish Balay 4064a2ae208SSatish Balay #undef __FUNCT__ 4074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 408dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 409a30f8f8cSSatish Balay { 410a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 411dfbe8321SBarry Smith PetscErrorCode ierr; 412a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 413a30f8f8cSSatish Balay 414a30f8f8cSSatish Balay PetscFunctionBegin; 415a30f8f8cSSatish Balay if (baij->size == 1) { 416a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 417a30f8f8cSSatish Balay } else { 418a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 419f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 420a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 421a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 422a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 423a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 4247adad957SLisandro Dalcin ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 425a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 426a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4270b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4280b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4290b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4300b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 431899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 432d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4330b8dc8d2SHong Zhang MatScalar *v; 4340b8dc8d2SHong Zhang 43574ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 436d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4370b8dc8d2SHong Zhang /* Amat */ 4380b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4390b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4400b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4410b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4420b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4430b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4440b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4450b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4460b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4470b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4480b8dc8d2SHong Zhang /* non-diagonal block */ 4490b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4500b8dc8d2SHong Zhang } 4510b8dc8d2SHong Zhang } 4520b8dc8d2SHong Zhang } 4530b8dc8d2SHong Zhang } 4540b8dc8d2SHong Zhang /* Bmat */ 4550b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4560b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4570b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4580b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4590b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++){ 4600b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4610b8dc8d2SHong Zhang for (col=0; col<bs; col++){ 4620b8dc8d2SHong Zhang for (row=0; row<bs; row++){ 4630b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4640b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4650b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4660b8dc8d2SHong Zhang } 4670b8dc8d2SHong Zhang } 4680b8dc8d2SHong Zhang } 4690b8dc8d2SHong Zhang } 470d0f46423SBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 4710b8dc8d2SHong Zhang *norm = 0.0; 472d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4730b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4740b8dc8d2SHong Zhang } 47574ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 476a30f8f8cSSatish Balay } else { 47729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 478a30f8f8cSSatish Balay } 479a30f8f8cSSatish Balay } 480a30f8f8cSSatish Balay PetscFunctionReturn(0); 481a30f8f8cSSatish Balay } 482a30f8f8cSSatish Balay 4834a2ae208SSatish Balay #undef __FUNCT__ 4844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 485dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 486a30f8f8cSSatish Balay { 487a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 488dfbe8321SBarry Smith PetscErrorCode ierr; 4891302d50aSBarry Smith PetscInt nstash,reallocs; 490a30f8f8cSSatish Balay InsertMode addv; 491a30f8f8cSSatish Balay 492a30f8f8cSSatish Balay PetscFunctionBegin; 493a30f8f8cSSatish Balay if (baij->donotstash) { 494a30f8f8cSSatish Balay PetscFunctionReturn(0); 495a30f8f8cSSatish Balay } 496a30f8f8cSSatish Balay 497a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 4987adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 499a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 50029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 501a30f8f8cSSatish Balay } 502a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 503a30f8f8cSSatish Balay 504d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 5051e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 506a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5071e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 508a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 5091e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 510a30f8f8cSSatish Balay PetscFunctionReturn(0); 511a30f8f8cSSatish Balay } 512a30f8f8cSSatish Balay 5134a2ae208SSatish Balay #undef __FUNCT__ 5144a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 515dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 516a30f8f8cSSatish Balay { 517a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 518a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 5196849ba73SBarry Smith PetscErrorCode ierr; 52013f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 521e44c0bd4SBarry Smith PetscInt *row,*col; 522e44c0bd4SBarry Smith PetscTruth other_disassembled; 52313f74950SBarry Smith PetscMPIInt n; 524a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 525a30f8f8cSSatish Balay MatScalar *val; 526a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 527a30f8f8cSSatish Balay 52891c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 529a30f8f8cSSatish Balay PetscFunctionBegin; 530a30f8f8cSSatish Balay 531a30f8f8cSSatish Balay if (!baij->donotstash) { 532a30f8f8cSSatish Balay while (1) { 533a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 534a30f8f8cSSatish Balay if (!flg) break; 535a30f8f8cSSatish Balay 536a30f8f8cSSatish Balay for (i=0; i<n;) { 537a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 538a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 539a30f8f8cSSatish Balay if (j < n) ncols = j-i; 540a30f8f8cSSatish Balay else ncols = n-i; 541a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 542dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 543a30f8f8cSSatish Balay i = j; 544a30f8f8cSSatish Balay } 545a30f8f8cSSatish Balay } 546a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 547a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 548a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 549a30f8f8cSSatish Balay restore the original flags */ 550a30f8f8cSSatish Balay r1 = baij->roworiented; 551a30f8f8cSSatish Balay r2 = a->roworiented; 55291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 553a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 554a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 55591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 556a30f8f8cSSatish Balay while (1) { 557a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 558a30f8f8cSSatish Balay if (!flg) break; 559a30f8f8cSSatish Balay 560a30f8f8cSSatish Balay for (i=0; i<n;) { 561a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 562a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 563a30f8f8cSSatish Balay if (j < n) ncols = j-i; 564a30f8f8cSSatish Balay else ncols = n-i; 565dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 566a30f8f8cSSatish Balay i = j; 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay } 569a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 570a30f8f8cSSatish Balay baij->roworiented = r1; 571a30f8f8cSSatish Balay a->roworiented = r2; 57291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 573a30f8f8cSSatish Balay } 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 577a30f8f8cSSatish Balay 578a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 579a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 580a30f8f8cSSatish Balay /* 581a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 582a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 583a30f8f8cSSatish Balay */ 584a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 5857adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 586a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 587c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 588a30f8f8cSSatish Balay } 589a30f8f8cSSatish Balay } 590a30f8f8cSSatish Balay 591a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 59240781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 593a30f8f8cSSatish Balay } 59491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 595a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 596a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 597a30f8f8cSSatish Balay 59874ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 599a30f8f8cSSatish Balay baij->rowvalues = 0; 6005222a1afSHong Zhang 601a30f8f8cSSatish Balay PetscFunctionReturn(0); 602a30f8f8cSSatish Balay } 603a30f8f8cSSatish Balay 604dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 6054a2ae208SSatish Balay #undef __FUNCT__ 6064a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6076849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 608a30f8f8cSSatish Balay { 609a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 610dfbe8321SBarry Smith PetscErrorCode ierr; 611d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6121302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 61332077d6dSBarry Smith PetscTruth iascii,isdraw; 614b0a32e0cSBarry Smith PetscViewer sviewer; 615f3ef73ceSBarry Smith PetscViewerFormat format; 616a30f8f8cSSatish Balay 617a30f8f8cSSatish Balay PetscFunctionBegin; 61832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 619fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 62032077d6dSBarry Smith if (iascii) { 621b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 622456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 623a30f8f8cSSatish Balay MatInfo info; 6247adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 625a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 62677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 627d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 628d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 629a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 63077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 631a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 63277431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 633b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 63407d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 635a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 636a30f8f8cSSatish Balay PetscFunctionReturn(0); 637fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 639a30f8f8cSSatish Balay PetscFunctionReturn(0); 640c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 641c1490034SHong Zhang PetscFunctionReturn(0); 642a30f8f8cSSatish Balay } 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay 645a30f8f8cSSatish Balay if (isdraw) { 646b0a32e0cSBarry Smith PetscDraw draw; 647a30f8f8cSSatish Balay PetscTruth isnull; 648b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 649b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 650a30f8f8cSSatish Balay } 651a30f8f8cSSatish Balay 652a30f8f8cSSatish Balay if (size == 1) { 6537adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 654a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 655a30f8f8cSSatish Balay } else { 656a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 657a30f8f8cSSatish Balay Mat A; 65865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 660d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 661a30f8f8cSSatish Balay MatScalar *a; 662a30f8f8cSSatish Balay 663f204ca49SKris Buschelman /* Should this be the same type as mat? */ 6647adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 665a30f8f8cSSatish Balay if (!rank) { 666f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 667a30f8f8cSSatish Balay } else { 668f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 669a30f8f8cSSatish Balay } 670f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 671d0f46423SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 67252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 673a30f8f8cSSatish Balay 674a30f8f8cSSatish Balay /* copy over the A part */ 67565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 676a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6771302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 678a30f8f8cSSatish Balay 679a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 680e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 681a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 682a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 683e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 684a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 685dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 686a30f8f8cSSatish Balay col++; a += bs; 687a30f8f8cSSatish Balay } 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay } 690a30f8f8cSSatish Balay /* copy over the B part */ 69165d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 69265d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 693a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 694e9f7bc9eSHong Zhang 695e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 696a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 697a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 698a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 699a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 700799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 701a30f8f8cSSatish Balay col++; a += bs; 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay } 704a30f8f8cSSatish Balay } 705a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 706a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 707a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 708a30f8f8cSSatish Balay /* 709a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 710b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 711a30f8f8cSSatish Balay */ 712b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71365d70643SHong Zhang if (!rank) { 7147adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 719a30f8f8cSSatish Balay } 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721a30f8f8cSSatish Balay } 722a30f8f8cSSatish Balay 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 726a30f8f8cSSatish Balay { 727dfbe8321SBarry Smith PetscErrorCode ierr; 72832077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay PetscFunctionBegin; 73132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 732fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 733b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 734fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 73532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 736a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } else { 7381302d50aSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay PetscFunctionReturn(0); 741a30f8f8cSSatish Balay } 742a30f8f8cSSatish Balay 7434a2ae208SSatish Balay #undef __FUNCT__ 7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 746a30f8f8cSSatish Balay { 747a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 748dfbe8321SBarry Smith PetscErrorCode ierr; 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay PetscFunctionBegin; 751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 752d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 753a30f8f8cSSatish Balay #endif 754a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 755a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 756a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 757a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 7599c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 760a30f8f8cSSatish Balay #else 76105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 762a30f8f8cSSatish Balay #endif 76305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 764a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 765a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 76640781036SHong Zhang if (baij->slvec0) { 76740781036SHong Zhang ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr); 76840781036SHong Zhang ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr); 76940781036SHong Zhang } 77040781036SHong Zhang if (baij->slvec1) { 77140781036SHong Zhang ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr); 77240781036SHong Zhang ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr); 77340781036SHong Zhang ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr); 77440781036SHong Zhang } 77540781036SHong Zhang if (baij->sMvctx) {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);} 77605b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 77705b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77805b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 779fa22f6d0SBarry Smith if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);} 780fa22f6d0SBarry Smith if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);} 781fa22f6d0SBarry Smith if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);} 78265460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE) 78305b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 784a30f8f8cSSatish Balay #endif 78559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 787899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 788a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 789901853e0SKris Buschelman 790dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 791901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 792901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 793901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 794901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 795a30f8f8cSSatish Balay PetscFunctionReturn(0); 796a30f8f8cSSatish Balay } 797a30f8f8cSSatish Balay 7984a2ae208SSatish Balay #undef __FUNCT__ 799547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 800547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 801547795f9SHong Zhang { 802547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 803547795f9SHong Zhang PetscErrorCode ierr; 804547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 805547795f9SHong Zhang PetscScalar *x,*from; 806547795f9SHong Zhang 807547795f9SHong Zhang PetscFunctionBegin; 808547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 809547795f9SHong Zhang if (nt != A->cmap->n) { 810547795f9SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 811547795f9SHong Zhang } 812547795f9SHong Zhang 813547795f9SHong Zhang /* diagonal part */ 814547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 815547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang /* subdiagonal part */ 818547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 819547795f9SHong Zhang 820547795f9SHong Zhang /* copy x into the vec slvec0 */ 821547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 823547795f9SHong Zhang 824547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 825547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 826547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 827547795f9SHong Zhang 828547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 829547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 830547795f9SHong Zhang /* supperdiagonal part */ 831547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 832547795f9SHong Zhang PetscFunctionReturn(0); 833547795f9SHong Zhang } 834547795f9SHong Zhang 835547795f9SHong Zhang #undef __FUNCT__ 836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 838a9d4b620SHong Zhang { 839a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 840dfbe8321SBarry Smith PetscErrorCode ierr; 841d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 842fa22f6d0SBarry Smith PetscScalar *x,*from; 843a9d4b620SHong Zhang 844a9d4b620SHong Zhang PetscFunctionBegin; 845a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 846d0f46423SBarry Smith if (nt != A->cmap->n) { 847a9d4b620SHong Zhang SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 848a9d4b620SHong Zhang } 849a9d4b620SHong Zhang 850a9d4b620SHong Zhang /* diagonal part */ 851a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 852fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 853a9d4b620SHong Zhang 854a9d4b620SHong Zhang /* subdiagonal part */ 855a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 856fc165ae2SBarry Smith 857a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8581ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8591ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 860a9d4b620SHong Zhang 861fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 862fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8631ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 864fc165ae2SBarry Smith 865fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 866ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 867a9d4b620SHong Zhang /* supperdiagonal part */ 868a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 869a9d4b620SHong Zhang PetscFunctionReturn(0); 870a9d4b620SHong Zhang } 871a9d4b620SHong Zhang 872a9d4b620SHong Zhang #undef __FUNCT__ 87340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 874dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 875a30f8f8cSSatish Balay { 876a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 877dfbe8321SBarry Smith PetscErrorCode ierr; 8781302d50aSBarry Smith PetscInt nt; 879a30f8f8cSSatish Balay 880a30f8f8cSSatish Balay PetscFunctionBegin; 881a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 882d0f46423SBarry Smith if (nt != A->cmap->n) { 88329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 884a30f8f8cSSatish Balay } 885a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 886d0f46423SBarry Smith if (nt != A->rmap->N) { 88729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 888a30f8f8cSSatish Balay } 88965d70643SHong Zhang 890ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 891b941877fSHong Zhang /* do diagonal part */ 892b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 893b941877fSHong Zhang /* do supperdiagonal part */ 894ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 895b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 896b941877fSHong Zhang /* do subdiagonal part */ 897b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 898ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 899ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 90065d70643SHong Zhang 901a30f8f8cSSatish Balay PetscFunctionReturn(0); 902a30f8f8cSSatish Balay } 903a30f8f8cSSatish Balay 9044a2ae208SSatish Balay #undef __FUNCT__ 9054a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 906dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 907a30f8f8cSSatish Balay { 908de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 909dfbe8321SBarry Smith PetscErrorCode ierr; 910d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 911a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 912a9d4b620SHong Zhang 913a9d4b620SHong Zhang PetscFunctionBegin; 914a9d4b620SHong Zhang /* 9157adad957SLisandro Dalcin PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n"); 9167adad957SLisandro Dalcin PetscSynchronizedFlush(((PetscObject)A)->comm); 917a9d4b620SHong Zhang */ 918a9d4b620SHong Zhang /* diagonal part */ 919a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9202dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 921a9d4b620SHong Zhang 922a9d4b620SHong Zhang /* subdiagonal part */ 923a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 924a9d4b620SHong Zhang 925a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9261ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9271ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 928a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9291ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 930a9d4b620SHong Zhang 931ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9321ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 933ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 934a9d4b620SHong Zhang 935a9d4b620SHong Zhang /* supperdiagonal part */ 936a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 937a9d4b620SHong Zhang 938a9d4b620SHong Zhang PetscFunctionReturn(0); 939a9d4b620SHong Zhang } 940a9d4b620SHong Zhang 941a9d4b620SHong Zhang #undef __FUNCT__ 942a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 943dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 944a9d4b620SHong Zhang { 945a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 946dfbe8321SBarry Smith PetscErrorCode ierr; 947a30f8f8cSSatish Balay 948a30f8f8cSSatish Balay PetscFunctionBegin; 949ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 950b941877fSHong Zhang /* do diagonal part */ 951b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 952b941877fSHong Zhang /* do supperdiagonal part */ 953ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 954de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 955de8b6608SHong Zhang 956b941877fSHong Zhang /* do subdiagonal part */ 957a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 958ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 959ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 960aa482183SHong Zhang 961a30f8f8cSSatish Balay PetscFunctionReturn(0); 962a30f8f8cSSatish Balay } 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* 965a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 966a30f8f8cSSatish Balay diagonal block 967a30f8f8cSSatish Balay */ 9684a2ae208SSatish Balay #undef __FUNCT__ 9694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 970dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 971a30f8f8cSSatish Balay { 972a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 973dfbe8321SBarry Smith PetscErrorCode ierr; 974a30f8f8cSSatish Balay 975a30f8f8cSSatish Balay PetscFunctionBegin; 976d0f46423SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 977a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 978a30f8f8cSSatish Balay PetscFunctionReturn(0); 979a30f8f8cSSatish Balay } 980a30f8f8cSSatish Balay 9814a2ae208SSatish Balay #undef __FUNCT__ 9824a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 983f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 984a30f8f8cSSatish Balay { 985a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 986dfbe8321SBarry Smith PetscErrorCode ierr; 987a30f8f8cSSatish Balay 988a30f8f8cSSatish Balay PetscFunctionBegin; 989f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 990f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 991a30f8f8cSSatish Balay PetscFunctionReturn(0); 992a30f8f8cSSatish Balay } 993a30f8f8cSSatish Balay 9944a2ae208SSatish Balay #undef __FUNCT__ 9954a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9961302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 997a30f8f8cSSatish Balay { 998d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 999d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1000d0d4cfc2SHong Zhang PetscErrorCode ierr; 1001d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1002d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1003899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 1004d0d4cfc2SHong Zhang 1005a30f8f8cSSatish Balay PetscFunctionBegin; 10064eeb8337SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1007d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1008d0d4cfc2SHong Zhang 1009d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1010d0d4cfc2SHong Zhang /* 1011d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1012d0d4cfc2SHong Zhang */ 1013d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1014d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1015d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1016d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1017d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1018d0d4cfc2SHong Zhang if (max < tmp) { max = tmp; } 1019d0d4cfc2SHong Zhang } 102074ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1021d0d4cfc2SHong Zhang } 1022d0d4cfc2SHong Zhang 1023d0d4cfc2SHong Zhang if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1024d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1025d0d4cfc2SHong Zhang 1026d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1027d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1028d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1029d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1030d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1031d0d4cfc2SHong Zhang nztot = nzA + nzB; 1032d0d4cfc2SHong Zhang 1033d0d4cfc2SHong Zhang cmap = mat->garray; 1034d0d4cfc2SHong Zhang if (v || idx) { 1035d0d4cfc2SHong Zhang if (nztot) { 1036d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1037d0d4cfc2SHong Zhang PetscInt imark = -1; 1038d0d4cfc2SHong Zhang if (v) { 1039d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1040d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1041d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1042d0d4cfc2SHong Zhang else break; 1043d0d4cfc2SHong Zhang } 1044d0d4cfc2SHong Zhang imark = i; 1045d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1046d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1047d0d4cfc2SHong Zhang } 1048d0d4cfc2SHong Zhang if (idx) { 1049d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1050d0d4cfc2SHong Zhang if (imark > -1) { 1051d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1052d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang } else { 1055d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1056d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) 1057d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1058d0d4cfc2SHong Zhang else break; 1059d0d4cfc2SHong Zhang } 1060d0d4cfc2SHong Zhang imark = i; 1061d0d4cfc2SHong Zhang } 1062d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1063d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1064d0d4cfc2SHong Zhang } 1065d0d4cfc2SHong Zhang } else { 1066d0d4cfc2SHong Zhang if (idx) *idx = 0; 1067d0d4cfc2SHong Zhang if (v) *v = 0; 1068d0d4cfc2SHong Zhang } 1069d0d4cfc2SHong Zhang } 1070d0d4cfc2SHong Zhang *nz = nztot; 1071d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1072d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1073a30f8f8cSSatish Balay PetscFunctionReturn(0); 1074a30f8f8cSSatish Balay } 1075a30f8f8cSSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10781302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1079a30f8f8cSSatish Balay { 1080a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1081a30f8f8cSSatish Balay 1082a30f8f8cSSatish Balay PetscFunctionBegin; 1083abc0a331SBarry Smith if (!baij->getrowactive) { 1084abc0a331SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1085a30f8f8cSSatish Balay } 1086a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1087a30f8f8cSSatish Balay PetscFunctionReturn(0); 1088a30f8f8cSSatish Balay } 1089a30f8f8cSSatish Balay 10904a2ae208SSatish Balay #undef __FUNCT__ 1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1092d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1093d0d4cfc2SHong Zhang { 1094d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1095d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1096d0d4cfc2SHong Zhang 1097d0d4cfc2SHong Zhang PetscFunctionBegin; 1098d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1099d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1100d0d4cfc2SHong Zhang } 1101d0d4cfc2SHong Zhang #undef __FUNCT__ 1102d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1103d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1104d0d4cfc2SHong Zhang { 1105d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1106d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1107d0d4cfc2SHong Zhang 1108d0d4cfc2SHong Zhang PetscFunctionBegin; 1109d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1110d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1111d0d4cfc2SHong Zhang } 1112d0d4cfc2SHong Zhang 1113d0d4cfc2SHong Zhang #undef __FUNCT__ 111499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 111599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 111699cafbc1SBarry Smith { 111799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111899cafbc1SBarry Smith PetscErrorCode ierr; 111999cafbc1SBarry Smith 112099cafbc1SBarry Smith PetscFunctionBegin; 112199cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 112299cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 112399cafbc1SBarry Smith PetscFunctionReturn(0); 112499cafbc1SBarry Smith } 112599cafbc1SBarry Smith 112699cafbc1SBarry Smith #undef __FUNCT__ 112799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 112899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 112999cafbc1SBarry Smith { 113099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 113199cafbc1SBarry Smith PetscErrorCode ierr; 113299cafbc1SBarry Smith 113399cafbc1SBarry Smith PetscFunctionBegin; 113499cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 113599cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 113699cafbc1SBarry Smith PetscFunctionReturn(0); 113799cafbc1SBarry Smith } 113899cafbc1SBarry Smith 113999cafbc1SBarry Smith #undef __FUNCT__ 11404a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1141dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1142a30f8f8cSSatish Balay { 1143a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1144dfbe8321SBarry Smith PetscErrorCode ierr; 1145a30f8f8cSSatish Balay 1146a30f8f8cSSatish Balay PetscFunctionBegin; 1147a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1148a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1149a30f8f8cSSatish Balay PetscFunctionReturn(0); 1150a30f8f8cSSatish Balay } 1151a30f8f8cSSatish Balay 11524a2ae208SSatish Balay #undef __FUNCT__ 11534a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1154dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1155a30f8f8cSSatish Balay { 1156a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1157a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1158dfbe8321SBarry Smith PetscErrorCode ierr; 1159a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1160a30f8f8cSSatish Balay 1161a30f8f8cSSatish Balay PetscFunctionBegin; 1162d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 1163a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1164a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1165a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1166a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1167a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1168a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1169a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1170a30f8f8cSSatish Balay info->nz_used = isend[0]; 1171a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1172a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1173a30f8f8cSSatish Balay info->memory = isend[3]; 1174a30f8f8cSSatish Balay info->mallocs = isend[4]; 1175a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 11767adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 1177a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1178a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1179a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1180a30f8f8cSSatish Balay info->memory = irecv[3]; 1181a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1182a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 11837adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 1184a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1185a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1186a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1187a30f8f8cSSatish Balay info->memory = irecv[3]; 1188a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1189a30f8f8cSSatish Balay } else { 119077431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1191a30f8f8cSSatish Balay } 1192a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1193a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1194a30f8f8cSSatish Balay info->factor_mallocs = 0; 1195a30f8f8cSSatish Balay PetscFunctionReturn(0); 1196a30f8f8cSSatish Balay } 1197a30f8f8cSSatish Balay 11984a2ae208SSatish Balay #undef __FUNCT__ 11994a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 12004e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg) 1201a30f8f8cSSatish Balay { 1202a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1203d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1204dfbe8321SBarry Smith PetscErrorCode ierr; 1205a30f8f8cSSatish Balay 1206a30f8f8cSSatish Balay PetscFunctionBegin; 1207e98b92d7SKris Buschelman switch (op) { 1208512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1209e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 121028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1211a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1212e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12134e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12144e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1215e98b92d7SKris Buschelman break; 1216e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12174e0d8c25SBarry Smith a->roworiented = flg; 12184e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12194e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1220e98b92d7SKris Buschelman break; 12214e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1222290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1223e98b92d7SKris Buschelman break; 1224e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12254e0d8c25SBarry Smith a->donotstash = flg; 1226e98b92d7SKris Buschelman break; 1227e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12284e0d8c25SBarry Smith a->ht_flag = flg; 1229e98b92d7SKris Buschelman break; 12309a4540c5SBarry Smith case MAT_HERMITIAN: 1231547795f9SHong Zhang if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1232eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1233547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1234eeffb40dSHong Zhang break; 123577e54ba9SKris Buschelman case MAT_SYMMETRIC: 1236eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1237eeffb40dSHong Zhang break; 123877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1239eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1240eeffb40dSHong Zhang break; 12419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12424e0d8c25SBarry Smith if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 1243290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124477e54ba9SKris Buschelman break; 1245d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12464e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1247d0d4cfc2SHong Zhang break; 1248d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12494e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1250d0d4cfc2SHong Zhang break; 1251d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12524e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1253d0d4cfc2SHong Zhang break; 1254e98b92d7SKris Buschelman default: 1255ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay PetscFunctionReturn(0); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 12604a2ae208SSatish Balay #undef __FUNCT__ 12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1263a30f8f8cSSatish Balay { 1264dfbe8321SBarry Smith PetscErrorCode ierr; 1265a30f8f8cSSatish Balay PetscFunctionBegin; 1266815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1267999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1268fc4dec0aSBarry Smith } 12698115998fSBarry Smith PetscFunctionReturn(0); 1270a30f8f8cSSatish Balay } 1271a30f8f8cSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1275a30f8f8cSSatish Balay { 1276a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1277a30f8f8cSSatish Balay Mat a=baij->A, b=baij->B; 1278dfbe8321SBarry Smith PetscErrorCode ierr; 12795e90f9d9SHong Zhang PetscInt nv,m,n; 1280b3bf805bSHong Zhang PetscTruth flg; 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay PetscFunctionBegin; 1283a30f8f8cSSatish Balay if (ll != rr){ 1284b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1285b3bf805bSHong Zhang if (!flg) 128629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1287a30f8f8cSSatish Balay } 1288b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1289b3bf805bSHong Zhang 12905e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 12915e90f9d9SHong Zhang if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1292b3bf805bSHong Zhang 12935e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 12945e90f9d9SHong Zhang if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12955e90f9d9SHong Zhang 1296ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12975e90f9d9SHong Zhang 12985e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1299a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 13005e90f9d9SHong Zhang 13015e90f9d9SHong Zhang /* scale the diagonal part */ 1302a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1303a30f8f8cSSatish Balay 13045e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1305ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1306a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1307a30f8f8cSSatish Balay PetscFunctionReturn(0); 1308a30f8f8cSSatish Balay } 1309a30f8f8cSSatish Balay 13104a2ae208SSatish Balay #undef __FUNCT__ 13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1313a30f8f8cSSatish Balay { 1314f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1315dfbe8321SBarry Smith PetscErrorCode ierr; 1316a30f8f8cSSatish Balay 1317a30f8f8cSSatish Balay PetscFunctionBegin; 1318a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1319a30f8f8cSSatish Balay PetscFunctionReturn(0); 1320a30f8f8cSSatish Balay } 1321a30f8f8cSSatish Balay 13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1323a30f8f8cSSatish Balay 13244a2ae208SSatish Balay #undef __FUNCT__ 13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1326dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1327a30f8f8cSSatish Balay { 1328a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1329a30f8f8cSSatish Balay Mat a,b,c,d; 1330a30f8f8cSSatish Balay PetscTruth flg; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332a30f8f8cSSatish Balay 1333a30f8f8cSSatish Balay PetscFunctionBegin; 1334a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1335a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1338abc0a331SBarry Smith if (flg) { 1339a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1340a30f8f8cSSatish Balay } 13417adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1342a30f8f8cSSatish Balay PetscFunctionReturn(0); 1343a30f8f8cSSatish Balay } 1344a30f8f8cSSatish Balay 13454a2ae208SSatish Balay #undef __FUNCT__ 13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13483c896bc6SHong Zhang { 13493c896bc6SHong Zhang PetscErrorCode ierr; 13503c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 13513c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 13523c896bc6SHong Zhang 13533c896bc6SHong Zhang PetscFunctionBegin; 13543c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13553c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1356d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1358d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13593c896bc6SHong Zhang } else { 13603c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13613c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang PetscFunctionReturn(0); 13643c896bc6SHong Zhang } 13653c896bc6SHong Zhang 13663c896bc6SHong Zhang #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A) 1369273d9f13SBarry Smith { 1370dfbe8321SBarry Smith PetscErrorCode ierr; 1371273d9f13SBarry Smith 1372273d9f13SBarry Smith PetscFunctionBegin; 1373db4efbfdSBarry Smith ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1374273d9f13SBarry Smith PetscFunctionReturn(0); 1375273d9f13SBarry Smith } 1376a5e6ed63SBarry Smith 13774fe895cdSHong Zhang #include "petscblaslapack.h" 13784fe895cdSHong Zhang #undef __FUNCT__ 13794fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13804fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13814fe895cdSHong Zhang { 13824fe895cdSHong Zhang PetscErrorCode ierr; 13834fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data; 13844fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13854fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13864fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13874fe895cdSHong Zhang 13884fe895cdSHong Zhang PetscFunctionBegin; 13894fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13904fe895cdSHong Zhang PetscScalar alpha = a; 13914fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 13924fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 13930805154bSBarry Smith bnz = PetscBLASIntCast(xa->nz); 13944fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one); 13954fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 13964fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 13970805154bSBarry Smith bnz = PetscBLASIntCast(xb->nz); 13984fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one); 13994fe895cdSHong Zhang } else { 1400d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 14014fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1402d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14034fe895cdSHong Zhang } 14044fe895cdSHong Zhang PetscFunctionReturn(0); 14054fe895cdSHong Zhang } 14064fe895cdSHong Zhang 1407a5e6ed63SBarry Smith #undef __FUNCT__ 14086363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ" 14096363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs) 14106363de48SJed Brown { 14116363de48SJed Brown Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 14126363de48SJed Brown PetscInt rbs,cbs; 14136363de48SJed Brown PetscErrorCode ierr; 14146363de48SJed Brown 14156363de48SJed Brown PetscFunctionBegin; 14166363de48SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 14176363de48SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 14186363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 14196363de48SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 14206363de48SJed Brown if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs); 14216363de48SJed Brown if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs); 14226363de48SJed Brown PetscFunctionReturn(0); 14236363de48SJed Brown } 14246363de48SJed Brown 14256363de48SJed Brown #undef __FUNCT__ 1426a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14271302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1428a5e6ed63SBarry Smith { 14296849ba73SBarry Smith PetscErrorCode ierr; 14301302d50aSBarry Smith PetscInt i; 1431a5e6ed63SBarry Smith PetscTruth flg; 1432a5e6ed63SBarry Smith 14336849ba73SBarry Smith PetscFunctionBegin; 1434a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1435a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1436a5e6ed63SBarry Smith if (!flg) { 14371302d50aSBarry Smith SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1438a5e6ed63SBarry Smith } 1439a5e6ed63SBarry Smith } 1440a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1441a5e6ed63SBarry Smith PetscFunctionReturn(0); 1442a5e6ed63SBarry Smith } 1443a5e6ed63SBarry Smith 1444a5e6ed63SBarry Smith 1445a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1446a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1447a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1448a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1449a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1450a9d4b620SHong Zhang MatMult_MPISBAIJ, 145197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1452431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1453431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 145797304618SKris Buschelman /*10*/ 0, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 146041f059aeSBarry Smith MatSOR_MPISBAIJ, 1461a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 146297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ, 1463a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1464a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1465a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1466a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 146797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ, 1468a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1469a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1470a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1471d519adbfSMatthew Knepley /*24*/ 0, 1472a30f8f8cSSatish Balay 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ, 1477b5df2d14SHong Zhang 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ, 1487a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1488d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1489a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14903c896bc6SHong Zhang MatCopy_MPISBAIJ, 1491d519adbfSMatthew Knepley /*44*/ 0, 1492a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1493a30f8f8cSSatish Balay 0, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay 0, 14966363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ, 1497a30f8f8cSSatish Balay 0, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501d519adbfSMatthew Knepley /*54*/ 0, 1502a30f8f8cSSatish Balay 0, 1503a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1504a30f8f8cSSatish Balay 0, 1505a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1506d519adbfSMatthew Knepley /*59*/ 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509357abbc8SBarry Smith 0, 151024d5174aSHong Zhang 0, 1511d519adbfSMatthew Knepley /*64*/ 0, 151224d5174aSHong Zhang 0, 151324d5174aSHong Zhang 0, 151424d5174aSHong Zhang 0, 151524d5174aSHong Zhang 0, 1516d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ, 151724d5174aSHong Zhang 0, 151897304618SKris Buschelman 0, 151997304618SKris Buschelman 0, 152097304618SKris Buschelman 0, 1521d519adbfSMatthew Knepley /*74*/ 0, 152297304618SKris Buschelman 0, 152397304618SKris Buschelman 0, 152497304618SKris Buschelman 0, 152597304618SKris Buschelman 0, 1526d519adbfSMatthew Knepley /*79*/ 0, 152797304618SKris Buschelman 0, 152897304618SKris Buschelman 0, 152997304618SKris Buschelman 0, 1530865e5f61SKris Buschelman MatLoad_MPISBAIJ, 1531d519adbfSMatthew Knepley /*84*/ 0, 1532865e5f61SKris Buschelman 0, 1533865e5f61SKris Buschelman 0, 1534865e5f61SKris Buschelman 0, 1535865e5f61SKris Buschelman 0, 1536d519adbfSMatthew Knepley /*89*/ 0, 1537865e5f61SKris Buschelman 0, 1538865e5f61SKris Buschelman 0, 1539865e5f61SKris Buschelman 0, 1540865e5f61SKris Buschelman 0, 1541d519adbfSMatthew Knepley /*94*/ 0, 1542865e5f61SKris Buschelman 0, 1543865e5f61SKris Buschelman 0, 154499cafbc1SBarry Smith 0, 154599cafbc1SBarry Smith 0, 1546d519adbfSMatthew Knepley /*99*/ 0, 154799cafbc1SBarry Smith 0, 154899cafbc1SBarry Smith 0, 154999cafbc1SBarry Smith 0, 155099cafbc1SBarry Smith 0, 1551d519adbfSMatthew Knepley /*104*/0, 155299cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1553d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1554d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 1555d0d4cfc2SHong Zhang MatRestoreRowUpperTriangular_MPISBAIJ 155699cafbc1SBarry Smith }; 1557a30f8f8cSSatish Balay 1558a30f8f8cSSatish Balay 1559a30f8f8cSSatish Balay EXTERN_C_BEGIN 15604a2ae208SSatish Balay #undef __FUNCT__ 15614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 1562be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1563a30f8f8cSSatish Balay { 1564a30f8f8cSSatish Balay PetscFunctionBegin; 1565a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1566a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1567a30f8f8cSSatish Balay PetscFunctionReturn(0); 1568a30f8f8cSSatish Balay } 1569a30f8f8cSSatish Balay EXTERN_C_END 1570a30f8f8cSSatish Balay 1571273d9f13SBarry Smith EXTERN_C_BEGIN 15724a2ae208SSatish Balay #undef __FUNCT__ 1573a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1574be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 1575a23d5eceSKris Buschelman { 1576a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1577dfbe8321SBarry Smith PetscErrorCode ierr; 1578db4efbfdSBarry Smith PetscInt i,mbs,Mbs,newbs = PetscAbs(bs); 1579a23d5eceSKris Buschelman 1580a23d5eceSKris Buschelman PetscFunctionBegin; 1581db4efbfdSBarry Smith if (bs < 0){ 15827adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr); 1583db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 15848c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1585db4efbfdSBarry Smith bs = PetscAbs(bs); 1586db4efbfdSBarry Smith } 1587db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 1588db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 1589db4efbfdSBarry Smith } 1590db4efbfdSBarry Smith bs = newbs; 1591a23d5eceSKris Buschelman 1592a23d5eceSKris Buschelman if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3; 1593a23d5eceSKris Buschelman if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1; 159477431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 159577431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 1596899cda47SBarry Smith 1597d0f46423SBarry Smith B->rmap->bs = B->cmap->bs = bs; 159826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 159926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1600899cda47SBarry Smith 1601a23d5eceSKris Buschelman if (d_nnz) { 1602d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 160377431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 1604a23d5eceSKris Buschelman } 1605a23d5eceSKris Buschelman } 1606a23d5eceSKris Buschelman if (o_nnz) { 1607d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 160877431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 1609a23d5eceSKris Buschelman } 1610a23d5eceSKris Buschelman } 1611a23d5eceSKris Buschelman 1612a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1613d0f46423SBarry Smith mbs = B->rmap->n/bs; 1614d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1615d0f46423SBarry Smith if (mbs*bs != B->rmap->n) { 1616d0f46423SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1617a23d5eceSKris Buschelman } 1618a23d5eceSKris Buschelman 1619d0f46423SBarry Smith B->rmap->bs = bs; 1620a23d5eceSKris Buschelman b->bs2 = bs*bs; 1621a23d5eceSKris Buschelman b->mbs = mbs; 1622a23d5eceSKris Buschelman b->nbs = mbs; 1623a23d5eceSKris Buschelman b->Mbs = Mbs; 1624a23d5eceSKris Buschelman b->Nbs = Mbs; 1625a23d5eceSKris Buschelman 1626a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1627d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1628a23d5eceSKris Buschelman } 1629d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1630d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1631a23d5eceSKris Buschelman 1632d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1633d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1634a23d5eceSKris Buschelman 1635526dfc15SBarry Smith if (!B->preallocated) { 1636f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1637d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16389c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 163952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 1640f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1641d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16424aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 164352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 1644533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->bstash);CHKERRQ(ierr); 1645526dfc15SBarry Smith } 1646a23d5eceSKris Buschelman 1647526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1648526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 1649526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1650a23d5eceSKris Buschelman PetscFunctionReturn(0); 1651a23d5eceSKris Buschelman } 1652a23d5eceSKris Buschelman EXTERN_C_END 1653a23d5eceSKris Buschelman 16545c9eb25fSBarry Smith EXTERN_C_BEGIN 1655611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1656611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*); 1657611f576cSBarry Smith #endif 1658611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 16595c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*); 1660611f576cSBarry Smith #endif 1661b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1662b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1663b5e56a35SBarry Smith #endif 16645c9eb25fSBarry Smith EXTERN_C_END 16655c9eb25fSBarry Smith 16660bad9183SKris Buschelman /*MC 1667fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 16680bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 16690bad9183SKris Buschelman 16700bad9183SKris Buschelman Options Database Keys: 16710bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 16720bad9183SKris Buschelman 16730bad9183SKris Buschelman Level: beginner 16740bad9183SKris Buschelman 16750bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 16760bad9183SKris Buschelman M*/ 16770bad9183SKris Buschelman 1678a23d5eceSKris Buschelman EXTERN_C_BEGIN 1679a23d5eceSKris Buschelman #undef __FUNCT__ 16804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 1681be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B) 1682b5df2d14SHong Zhang { 1683b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1684dfbe8321SBarry Smith PetscErrorCode ierr; 1685b5df2d14SHong Zhang PetscTruth flg; 1686b5df2d14SHong Zhang 1687b5df2d14SHong Zhang PetscFunctionBegin; 1688b5df2d14SHong Zhang 168938f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1690b0a32e0cSBarry Smith B->data = (void*)b; 1691b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1692b5df2d14SHong Zhang 1693b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1694b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1695b5df2d14SHong Zhang B->mapping = 0; 1696b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1697b5df2d14SHong Zhang 1698b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 16997adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 17007adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 1701b5df2d14SHong Zhang 1702b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1703899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1704b5df2d14SHong Zhang 1705b5df2d14SHong Zhang /* build cache for off array entries formed */ 17067adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 1707b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 1708b5df2d14SHong Zhang b->colmap = PETSC_NULL; 1709b5df2d14SHong Zhang b->garray = PETSC_NULL; 1710b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1711b5df2d14SHong Zhang 1712b5df2d14SHong Zhang /* stuff used in block assembly */ 1713b5df2d14SHong Zhang b->barray = 0; 1714b5df2d14SHong Zhang 1715b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1716b5df2d14SHong Zhang b->lvec = 0; 1717b5df2d14SHong Zhang b->Mvctx = 0; 171840781036SHong Zhang b->slvec0 = 0; 171940781036SHong Zhang b->slvec0b = 0; 172040781036SHong Zhang b->slvec1 = 0; 172140781036SHong Zhang b->slvec1a = 0; 172240781036SHong Zhang b->slvec1b = 0; 172340781036SHong Zhang b->sMvctx = 0; 1724b5df2d14SHong Zhang 1725b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1726b5df2d14SHong Zhang b->rowindices = 0; 1727b5df2d14SHong Zhang b->rowvalues = 0; 1728b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1729b5df2d14SHong Zhang 1730b5df2d14SHong Zhang /* hash table stuff */ 1731b5df2d14SHong Zhang b->ht = 0; 1732b5df2d14SHong Zhang b->hd = 0; 1733b5df2d14SHong Zhang b->ht_size = 0; 1734b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1735b5df2d14SHong Zhang b->ht_fact = 0; 1736b5df2d14SHong Zhang b->ht_total_ct = 0; 1737b5df2d14SHong Zhang b->ht_insert_ct = 0; 1738b5df2d14SHong Zhang 173959ffdab8SBarry Smith b->in_loc = 0; 174059ffdab8SBarry Smith b->v_loc = 0; 174159ffdab8SBarry Smith b->n_loc = 0; 17427adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17438c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 1744b5df2d14SHong Zhang if (flg) { 1745f6275e2eSBarry Smith PetscReal fact = 1.39; 17464e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17478c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 1748b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1749b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17501e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1751b5df2d14SHong Zhang } 17528c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17538c07d4e3SBarry Smith 1754b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1755ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C", 1756b5e56a35SBarry Smith "MatGetFactor_mpisbaij_pastix", 1757b5e56a35SBarry Smith MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1758b5e56a35SBarry Smith #endif 1759611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1760ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", 17615c9eb25fSBarry Smith "MatGetFactor_mpisbaij_mumps", 17625c9eb25fSBarry Smith MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr); 1763611f576cSBarry Smith #endif 1764611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES) 1765ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C", 17665c9eb25fSBarry Smith "MatGetFactor_mpisbaij_spooles", 17675c9eb25fSBarry Smith MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr); 1768611f576cSBarry Smith #endif 1769b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1770b5df2d14SHong Zhang "MatStoreValues_MPISBAIJ", 1771b5df2d14SHong Zhang MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1772b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1773b5df2d14SHong Zhang "MatRetrieveValues_MPISBAIJ", 1774b5df2d14SHong Zhang MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1775b5df2d14SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1776b5df2d14SHong Zhang "MatGetDiagonalBlock_MPISBAIJ", 1777b5df2d14SHong Zhang MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1778a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C", 1779a23d5eceSKris Buschelman "MatMPISBAIJSetPreallocation_MPISBAIJ", 1780a23d5eceSKris Buschelman MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 178123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 178223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 178323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 178423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 178517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1786b5df2d14SHong Zhang PetscFunctionReturn(0); 1787b5df2d14SHong Zhang } 1788273d9f13SBarry Smith EXTERN_C_END 1789b5df2d14SHong Zhang 1790209238afSKris Buschelman /*MC 1791002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1792209238afSKris Buschelman 1793209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1794209238afSKris Buschelman and MATMPISBAIJ otherwise. 1795209238afSKris Buschelman 1796209238afSKris Buschelman Options Database Keys: 1797209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1798209238afSKris Buschelman 1799209238afSKris Buschelman Level: beginner 1800209238afSKris Buschelman 1801209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1802209238afSKris Buschelman M*/ 1803209238afSKris Buschelman 1804209238afSKris Buschelman EXTERN_C_BEGIN 1805209238afSKris Buschelman #undef __FUNCT__ 1806209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ" 1807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A) 1808dfbe8321SBarry Smith { 18096849ba73SBarry Smith PetscErrorCode ierr; 18101302d50aSBarry Smith PetscMPIInt size; 1811209238afSKris Buschelman 1812209238afSKris Buschelman PetscFunctionBegin; 18137adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1814209238afSKris Buschelman if (size == 1) { 1815209238afSKris Buschelman ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr); 1816209238afSKris Buschelman } else { 1817209238afSKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 1818209238afSKris Buschelman } 1819209238afSKris Buschelman PetscFunctionReturn(0); 1820209238afSKris Buschelman } 1821209238afSKris Buschelman EXTERN_C_END 1822209238afSKris Buschelman 18234a2ae208SSatish Balay #undef __FUNCT__ 18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1825b5df2d14SHong Zhang /*@C 1826b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1827b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1828b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1829b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1830b5df2d14SHong Zhang 1831b5df2d14SHong Zhang Collective on Mat 1832b5df2d14SHong Zhang 1833b5df2d14SHong Zhang Input Parameters: 1834b5df2d14SHong Zhang + A - the matrix 1835b5df2d14SHong Zhang . bs - size of blockk 1836b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1837b5df2d14SHong Zhang submatrix (same for all local rows) 1838b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18396d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18406d10fdaeSSatish Balay (possibly different for each block row) or PETSC_NULL. You must leave room 18416d10fdaeSSatish Balay for the diagonal entry even if it is zero. 1842b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1843b5df2d14SHong Zhang submatrix (same for all local rows). 1844b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1845b5df2d14SHong Zhang off-diagonal portion of the local submatrix (possibly different for 1846b5df2d14SHong Zhang each block row) or PETSC_NULL. 1847b5df2d14SHong Zhang 1848b5df2d14SHong Zhang 1849b5df2d14SHong Zhang Options Database Keys: 1850b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1851b5df2d14SHong Zhang block calculations (much slower) 1852b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1853b5df2d14SHong Zhang 1854b5df2d14SHong Zhang Notes: 1855b5df2d14SHong Zhang 1856b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1857b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1858b5df2d14SHong Zhang 185949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 186049a6f317SBarry Smith 1861b5df2d14SHong Zhang Storage Information: 1862b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1863b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1864b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1865b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1868b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 1869b5df2d14SHong Zhang d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1870b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1871b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1872b5df2d14SHong Zhang 1873aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1874aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1875aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1876aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1877aa95bbe8SBarry Smith 1878b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1879b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1880b5df2d14SHong Zhang 1881b5df2d14SHong Zhang .vb 1882b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1883b5df2d14SHong Zhang ------------------- 1884b5df2d14SHong Zhang row 3 | o o o d d d o o o o o o 1885b5df2d14SHong Zhang row 4 | o o o d d d o o o o o o 1886b5df2d14SHong Zhang row 5 | o o o d d d o o o o o o 1887b5df2d14SHong Zhang ------------------- 1888b5df2d14SHong Zhang .ve 1889b5df2d14SHong Zhang 1890b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1891b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 18926d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 18936d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1894b5df2d14SHong Zhang 18956d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 18966d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1897b5df2d14SHong Zhang and o_nz should indicate the number of block nonzeros per row in the o matrix. 1898b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1899b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1900b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1901b5df2d14SHong Zhang matrices. 1902b5df2d14SHong Zhang 1903b5df2d14SHong Zhang Level: intermediate 1904b5df2d14SHong Zhang 1905b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1906b5df2d14SHong Zhang 1907b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1908b5df2d14SHong Zhang @*/ 1909be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1910b5df2d14SHong Zhang { 19111302d50aSBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1912b5df2d14SHong Zhang 1913b5df2d14SHong Zhang PetscFunctionBegin; 1914a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1915a23d5eceSKris Buschelman if (f) { 1916a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1917b5df2d14SHong Zhang } 1918b5df2d14SHong Zhang PetscFunctionReturn(0); 1919b5df2d14SHong Zhang } 1920b5df2d14SHong Zhang 19214a2ae208SSatish Balay #undef __FUNCT__ 19224a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ" 1923a30f8f8cSSatish Balay /*@C 1924a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1925a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1926a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1927a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1928a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1929a30f8f8cSSatish Balay 1930a30f8f8cSSatish Balay Collective on MPI_Comm 1931a30f8f8cSSatish Balay 1932a30f8f8cSSatish Balay Input Parameters: 1933a30f8f8cSSatish Balay + comm - MPI communicator 1934a30f8f8cSSatish Balay . bs - size of blockk 1935a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1936a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1937a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1938a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1939a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1940a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1941a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1942a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1943a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1944a30f8f8cSSatish Balay submatrix (same for all local rows) 1945a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19466d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19476d10fdaeSSatish Balay (possibly different for each block block row) or PETSC_NULL. 19486d10fdaeSSatish Balay You must leave room for the diagonal entry even if it is zero. 1949a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1950a30f8f8cSSatish Balay submatrix (same for all local rows). 1951a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1952a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1953a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1954a30f8f8cSSatish Balay 1955a30f8f8cSSatish Balay Output Parameter: 1956a30f8f8cSSatish Balay . A - the matrix 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay Options Database Keys: 1959a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1960a30f8f8cSSatish Balay block calculations (much slower) 1961a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1962a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1963a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1964a30f8f8cSSatish Balay 1965175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1966ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1967175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1968175b88e8SBarry Smith 1969a30f8f8cSSatish Balay Notes: 1970d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19716d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1972d1be2dadSMatthew Knepley 1973a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1974a30f8f8cSSatish Balay (possibly both). 1975a30f8f8cSSatish Balay 1976a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1977a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1978a30f8f8cSSatish Balay 197949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 198049a6f317SBarry Smith 1981a30f8f8cSSatish Balay Storage Information: 1982a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1983a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1984a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1985a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1988a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1989a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1990a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1991a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1992a30f8f8cSSatish Balay 1993a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1994a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1995a30f8f8cSSatish Balay 1996a30f8f8cSSatish Balay .vb 1997a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1998a30f8f8cSSatish Balay ------------------- 1999a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 2000a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 2001a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 2002a30f8f8cSSatish Balay ------------------- 2003a30f8f8cSSatish Balay .ve 2004a30f8f8cSSatish Balay 2005a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2006a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20076d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20086d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2009a30f8f8cSSatish Balay 20106d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20116d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2012a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2013a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2014a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2015a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2016a30f8f8cSSatish Balay matrices. 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay Level: intermediate 2019a30f8f8cSSatish Balay 2020a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2021a30f8f8cSSatish Balay 2022a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2023a30f8f8cSSatish Balay @*/ 2024a30f8f8cSSatish Balay 2025be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2026a30f8f8cSSatish Balay { 20276849ba73SBarry Smith PetscErrorCode ierr; 20281302d50aSBarry Smith PetscMPIInt size; 2029a30f8f8cSSatish Balay 2030a30f8f8cSSatish Balay PetscFunctionBegin; 2031f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2032f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2033273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2034273d9f13SBarry Smith if (size > 1) { 2035b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2036b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2037273d9f13SBarry Smith } else { 2038273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2039273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2040273d9f13SBarry Smith } 2041a30f8f8cSSatish Balay PetscFunctionReturn(0); 2042a30f8f8cSSatish Balay } 2043a30f8f8cSSatish Balay 2044a30f8f8cSSatish Balay 20454a2ae208SSatish Balay #undef __FUNCT__ 20464a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2048a30f8f8cSSatish Balay { 2049a30f8f8cSSatish Balay Mat mat; 2050a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2051dfbe8321SBarry Smith PetscErrorCode ierr; 2052d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2053387bc808SHong Zhang PetscScalar *array; 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay PetscFunctionBegin; 2056a30f8f8cSSatish Balay *newmat = 0; 20577adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2058d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20597adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20601d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 206126283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 206226283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2063e1b6402fSHong Zhang 206482327fa8SHong Zhang mat->factor = matin->factor; 2065273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 206682327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20687fff6886SHong Zhang 2069b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2070a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2071a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2072a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2073a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2074a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2075a30f8f8cSSatish Balay 2076899cda47SBarry Smith 2077a30f8f8cSSatish Balay a->size = oldmat->size; 2078a30f8f8cSSatish Balay a->rank = oldmat->rank; 2079a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2080a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2081a30f8f8cSSatish Balay a->rowindices = 0; 2082a30f8f8cSSatish Balay a->rowvalues = 0; 2083a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2084a30f8f8cSSatish Balay a->barray = 0; 2085899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2086899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2087899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2088899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2089a30f8f8cSSatish Balay 2090a30f8f8cSSatish Balay /* hash table stuff */ 2091a30f8f8cSSatish Balay a->ht = 0; 2092a30f8f8cSSatish Balay a->hd = 0; 2093a30f8f8cSSatish Balay a->ht_size = 0; 2094a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2095a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2096a30f8f8cSSatish Balay a->ht_total_ct = 0; 2097a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2098a30f8f8cSSatish Balay 2099899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2100a30f8f8cSSatish Balay if (oldmat->colmap) { 2101a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 2102a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2103a30f8f8cSSatish Balay #else 21041302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 210552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21061302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2107a30f8f8cSSatish Balay #endif 2108a30f8f8cSSatish Balay } else a->colmap = 0; 2109387bc808SHong Zhang 2110a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21111302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 211252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21131302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2114a30f8f8cSSatish Balay } else a->garray = 0; 2115a30f8f8cSSatish Balay 2116533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 211852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 2119a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 212052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 212182327fa8SHong Zhang 212282327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 212352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 212482327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 212552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 2126387bc808SHong Zhang 2127387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21281ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2129387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2130387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21311ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21321ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2133387bc808SHong Zhang ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21341ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 213552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr); 213652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr); 213752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr); 213852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr); 2140387bc808SHong Zhang 2141387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2142387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2143387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 214452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr); 214582327fa8SHong Zhang 2146a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 214752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 2148a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 214952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 21507adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay *newmat = mat; 2152a30f8f8cSSatish Balay PetscFunctionReturn(0); 2153a30f8f8cSSatish Balay } 2154a30f8f8cSSatish Balay 2155a30f8f8cSSatish Balay #include "petscsys.h" 2156a30f8f8cSSatish Balay 21574a2ae208SSatish Balay #undef __FUNCT__ 21584a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ" 2159a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 2160a30f8f8cSSatish Balay { 2161a30f8f8cSSatish Balay Mat A; 21626849ba73SBarry Smith PetscErrorCode ierr; 216313f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 216487828ca2SBarry Smith PetscScalar *vals,*buf; 2165a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 2166a30f8f8cSSatish Balay MPI_Status status; 2167e44c0bd4SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs; 216813f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*cols; 21692fd7e33dSBarry Smith PetscInt *procsnz = 0,jj,*mycols,*ibuf; 21701302d50aSBarry Smith PetscInt bs=1,Mbs,mbs,extra_rows; 21711302d50aSBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 21721302d50aSBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 217313f74950SBarry Smith int fd; 2174a30f8f8cSSatish Balay 2175a30f8f8cSSatish Balay PetscFunctionBegin; 217677925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21778c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21788c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2179a30f8f8cSSatish Balay 2180a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2181a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2182a30f8f8cSSatish Balay if (!rank) { 2183b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2184a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2185552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2186a30f8f8cSSatish Balay if (header[3] < 0) { 218729bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 2188a30f8f8cSSatish Balay } 2189a30f8f8cSSatish Balay } 2190a30f8f8cSSatish Balay 2191a7cc72afSBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 2192a30f8f8cSSatish Balay M = header[1]; N = header[2]; 2193a30f8f8cSSatish Balay 219429bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2195a30f8f8cSSatish Balay 2196a30f8f8cSSatish Balay /* 2197a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 2198a30f8f8cSSatish Balay divisible by the blocksize 2199a30f8f8cSSatish Balay */ 2200a30f8f8cSSatish Balay Mbs = M/bs; 2201a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 2202a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 2203a30f8f8cSSatish Balay else Mbs++; 2204a30f8f8cSSatish Balay if (extra_rows &&!rank) { 22051e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2206a30f8f8cSSatish Balay } 2207a30f8f8cSSatish Balay 2208a30f8f8cSSatish Balay /* determine ownership of all rows */ 2209a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 2210a30f8f8cSSatish Balay m = mbs*bs; 221174ed9c26SBarry Smith ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 2212e44c0bd4SBarry Smith mmbs = PetscMPIIntCast(mbs); 2213e44c0bd4SBarry Smith ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 2214a30f8f8cSSatish Balay rowners[0] = 0; 2215a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2216a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 2217a30f8f8cSSatish Balay rstart = rowners[rank]; 2218a30f8f8cSSatish Balay rend = rowners[rank+1]; 2219a30f8f8cSSatish Balay 2220a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 22212fd7e33dSBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr); 2222a30f8f8cSSatish Balay if (!rank) { 22231302d50aSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2224a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2225a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2226a7cc72afSBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2227a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2228a7cc72afSBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2229a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2230a30f8f8cSSatish Balay } else { 2231a7cc72afSBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2232a30f8f8cSSatish Balay } 2233a30f8f8cSSatish Balay 22340222edb1SHong Zhang if (!rank) { /* procs[0] */ 2235a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 22361302d50aSBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 22371302d50aSBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2238a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2239a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2240a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2241a30f8f8cSSatish Balay } 2242a30f8f8cSSatish Balay } 2243a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2244a30f8f8cSSatish Balay 2245a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2246a30f8f8cSSatish Balay maxnz = 0; 2247a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2248a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2249a30f8f8cSSatish Balay } 22501302d50aSBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2251a30f8f8cSSatish Balay 2252a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2253a30f8f8cSSatish Balay nz = procsnz[0]; 22541302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2255a30f8f8cSSatish Balay mycols = ibuf; 2256a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2257a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2258a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2259a30f8f8cSSatish Balay 2260a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2261a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2262a30f8f8cSSatish Balay nz = procsnz[i]; 2263a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2264a7cc72afSBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 2265a30f8f8cSSatish Balay } 2266a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2267a30f8f8cSSatish Balay if (size != 1) { 2268a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2269a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2270a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2271a7cc72afSBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 2272a30f8f8cSSatish Balay } 2273a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 22740222edb1SHong Zhang } else { /* procs[i], i>0 */ 2275a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2276a30f8f8cSSatish Balay nz = 0; 2277a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2278a30f8f8cSSatish Balay nz += locrowlens[i]; 2279a30f8f8cSSatish Balay } 22801302d50aSBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 2281a30f8f8cSSatish Balay mycols = ibuf; 2282a30f8f8cSSatish Balay /* receive message of column indices*/ 2283a7cc72afSBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2284a7cc72afSBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 228529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2286a30f8f8cSSatish Balay } 2287a30f8f8cSSatish Balay 2288a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 228974ed9c26SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 229074ed9c26SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 229174ed9c26SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229274ed9c26SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229374ed9c26SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 229474ed9c26SBarry Smith rowcount = 0; 229574ed9c26SBarry Smith nzcount = 0; 2296a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2297a30f8f8cSSatish Balay dcount = 0; 2298a30f8f8cSSatish Balay odcount = 0; 2299a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2300a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2301a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 23020222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2303a30f8f8cSSatish Balay if (!mask[tmp]) { 2304a30f8f8cSSatish Balay mask[tmp] = 1; 23050222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 23060222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2307a30f8f8cSSatish Balay } 2308a30f8f8cSSatish Balay } 2309a30f8f8cSSatish Balay rowcount++; 2310a30f8f8cSSatish Balay } 2311a30f8f8cSSatish Balay 23120222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 23130222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2314a30f8f8cSSatish Balay 2315a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2316a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2317a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2318a30f8f8cSSatish Balay } 2319a30f8f8cSSatish Balay 2320a30f8f8cSSatish Balay /* create our matrix */ 2321f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2322f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 232322191285SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr); 232417fa8088SHong Zhang ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 232522191285SKris Buschelman ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 2326a30f8f8cSSatish Balay 2327a30f8f8cSSatish Balay if (!rank) { 232887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2329a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2330a30f8f8cSSatish Balay nz = procsnz[0]; 2331a30f8f8cSSatish Balay vals = buf; 2332a30f8f8cSSatish Balay mycols = ibuf; 2333a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2334a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2335a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2336a30f8f8cSSatish Balay 2337a30f8f8cSSatish Balay /* insert into matrix */ 2338a30f8f8cSSatish Balay jj = rstart*bs; 2339a30f8f8cSSatish Balay for (i=0; i<m; i++) { 23407e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2341a30f8f8cSSatish Balay mycols += locrowlens[i]; 2342a30f8f8cSSatish Balay vals += locrowlens[i]; 2343a30f8f8cSSatish Balay jj++; 2344a30f8f8cSSatish Balay } 23457e06b45fSHong Zhang 2346a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2347a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2348a30f8f8cSSatish Balay nz = procsnz[i]; 2349a30f8f8cSSatish Balay vals = buf; 2350a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 23517adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2352a30f8f8cSSatish Balay } 2353a30f8f8cSSatish Balay /* the last proc */ 2354a30f8f8cSSatish Balay if (size != 1){ 2355a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2356a30f8f8cSSatish Balay vals = buf; 2357a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2358a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 23597adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 2360a30f8f8cSSatish Balay } 2361a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 23627e06b45fSHong Zhang 2363a30f8f8cSSatish Balay } else { 2364a30f8f8cSSatish Balay /* receive numeric values */ 236587828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 2366a30f8f8cSSatish Balay 2367a30f8f8cSSatish Balay /* receive message of values*/ 2368a30f8f8cSSatish Balay vals = buf; 2369a30f8f8cSSatish Balay mycols = ibuf; 23707adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2371a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 237229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 2373a30f8f8cSSatish Balay 2374a30f8f8cSSatish Balay /* insert into matrix */ 2375a30f8f8cSSatish Balay jj = rstart*bs; 2376a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2377a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2378a30f8f8cSSatish Balay mycols += locrowlens[i]; 2379a30f8f8cSSatish Balay vals += locrowlens[i]; 2380a30f8f8cSSatish Balay jj++; 2381a30f8f8cSSatish Balay } 2382a30f8f8cSSatish Balay } 23837e06b45fSHong Zhang 2384a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2385a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2386a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 238774ed9c26SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 238874ed9c26SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 238974ed9c26SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 2390a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2391a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239222191285SKris Buschelman *newmat = A; 2393a30f8f8cSSatish Balay PetscFunctionReturn(0); 2394a30f8f8cSSatish Balay } 2395a30f8f8cSSatish Balay 23964a2ae208SSatish Balay #undef __FUNCT__ 23974a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2398dcf5cc72SBarry Smith /*XXXXX@ 2399a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2400a30f8f8cSSatish Balay 2401a30f8f8cSSatish Balay Input Parameters: 2402a30f8f8cSSatish Balay . mat - the matrix 2403a30f8f8cSSatish Balay . fact - factor 2404a30f8f8cSSatish Balay 2405a30f8f8cSSatish Balay Collective on Mat 2406a30f8f8cSSatish Balay 2407a30f8f8cSSatish Balay Level: advanced 2408a30f8f8cSSatish Balay 2409a30f8f8cSSatish Balay Notes: 2410a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2413a30f8f8cSSatish Balay 2414a30f8f8cSSatish Balay .seealso: MatSetOption() 2415dcf5cc72SBarry Smith @XXXXX*/ 2416dcf5cc72SBarry Smith 241724d5174aSHong Zhang 24184a2ae208SSatish Balay #undef __FUNCT__ 2419985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2420985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 242124d5174aSHong Zhang { 242224d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2423f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2424ca54ac64SHong Zhang PetscReal atmp; 242587828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2426dfbe8321SBarry Smith PetscErrorCode ierr; 24271302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24281302d50aSBarry Smith PetscMPIInt rank,size; 24291302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 243087828ca2SBarry Smith PetscScalar *va; 24318a1c53f2SBarry Smith MatScalar *ba; 2432f4c0e9e4SHong Zhang MPI_Status stat; 243324d5174aSHong Zhang 243424d5174aSHong Zhang PetscFunctionBegin; 2435985db425SBarry Smith if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 2436985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr); 24371ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2438f4c0e9e4SHong Zhang 24397adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 24407adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2441f4c0e9e4SHong Zhang 2442d0f46423SBarry Smith bs = A->rmap->bs; 2443f4c0e9e4SHong Zhang mbs = a->mbs; 2444f4c0e9e4SHong Zhang Mbs = a->Mbs; 2445f4c0e9e4SHong Zhang ba = b->a; 2446f4c0e9e4SHong Zhang bi = b->i; 2447f4c0e9e4SHong Zhang bj = b->j; 2448f4c0e9e4SHong Zhang 2449f4c0e9e4SHong Zhang /* find ownerships */ 2450d0f46423SBarry Smith rowners_bs = A->rmap->range; 2451f4c0e9e4SHong Zhang 2452f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 245382502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2454ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2455f4c0e9e4SHong Zhang 2456f4c0e9e4SHong Zhang /* row_max for B */ 2457b8475685SHong Zhang if (rank != size-1){ 2458f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2459f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2460f4c0e9e4SHong Zhang brow = bs*i; 2461f4c0e9e4SHong Zhang for (j=0; j<ncols; j++){ 2462f4c0e9e4SHong Zhang bcol = bs*(*bj); 2463f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++){ 2464ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 246504d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2466f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++){ 2467f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2468ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2469ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2470f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2471f4c0e9e4SHong Zhang } 2472f4c0e9e4SHong Zhang } 2473f4c0e9e4SHong Zhang bj++; 2474f4c0e9e4SHong Zhang } 2475f4c0e9e4SHong Zhang } 2476f4c0e9e4SHong Zhang 2477f4c0e9e4SHong Zhang /* send values to its owners */ 2478f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++){ 2479f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2480ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 24817adad957SLisandro Dalcin ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr); 2482ca54ac64SHong Zhang } 2483f4c0e9e4SHong Zhang } 2484f4c0e9e4SHong Zhang 2485f4c0e9e4SHong Zhang /* receive values */ 2486ca54ac64SHong Zhang if (rank){ 2487f4c0e9e4SHong Zhang rvalues = work; 2488ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2489f4c0e9e4SHong Zhang for (source=0; source<rank; source++){ 24907adad957SLisandro Dalcin ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr); 2491f4c0e9e4SHong Zhang /* process values */ 2492f4c0e9e4SHong Zhang for (i=0; i<count; i++){ 2493ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2494f4c0e9e4SHong Zhang } 2495f4c0e9e4SHong Zhang } 2496ca54ac64SHong Zhang } 2497f4c0e9e4SHong Zhang 24981ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2499ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 250024d5174aSHong Zhang PetscFunctionReturn(0); 250124d5174aSHong Zhang } 25022798e883SHong Zhang 25032798e883SHong Zhang #undef __FUNCT__ 250441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 250541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25062798e883SHong Zhang { 25072798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2508dfbe8321SBarry Smith PetscErrorCode ierr; 2509d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 2510fa22f6d0SBarry Smith PetscScalar *x,*b,*ptr,*from; 2511ffe4fb16SHong Zhang Vec bb1; 2512ffe4fb16SHong Zhang 2513ffe4fb16SHong Zhang PetscFunctionBegin; 251477431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2515b75cf396SBarry Smith if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2516ffe4fb16SHong Zhang 2517a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 251841f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2519a2b30743SBarry Smith PetscFunctionReturn(0); 2520a2b30743SBarry Smith } 2521a2b30743SBarry Smith 2522ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2523ffe4fb16SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 252441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2525ffe4fb16SHong Zhang its--; 2526ffe4fb16SHong Zhang } 2527ffe4fb16SHong Zhang 2528ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2529ffe4fb16SHong Zhang while (its--){ 2530ffe4fb16SHong Zhang 2531ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2532ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2533ffe4fb16SHong Zhang 2534ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25351ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25361ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2537ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25381ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2539ffe4fb16SHong Zhang 2540efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2541ffe4fb16SHong Zhang 2542ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25431ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25441ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 2545ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25461ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2547ffe4fb16SHong Zhang 2548ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2549fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2550ffe4fb16SHong Zhang 2551ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25521ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 25531ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2554ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2555ffe4fb16SHong Zhang 2556ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2557ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang 2559ffe4fb16SHong Zhang /* local diagonal sweep */ 256041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2561ffe4fb16SHong Zhang } 2562ffe4fb16SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2563fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2565fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){ 256641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2567fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2568fa22f6d0SBarry Smith Vec xx1; 2569fa22f6d0SBarry Smith PetscTruth hasop; 257020f1ed55SBarry Smith const PetscScalar *diag; 2571887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 257220f1ed55SBarry Smith PetscInt i,n; 2573fa22f6d0SBarry Smith 2574fa22f6d0SBarry Smith if (!mat->xx1) { 2575fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2576fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2577fa22f6d0SBarry Smith } 2578fa22f6d0SBarry Smith xx1 = mat->xx1; 2579fa22f6d0SBarry Smith bb1 = mat->bb1; 2580fa22f6d0SBarry Smith 258141f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2582fa22f6d0SBarry Smith 2583fa22f6d0SBarry Smith if (!mat->diag) { 2584effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 2585fa22f6d0SBarry Smith ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr); 2586fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2587fa22f6d0SBarry Smith } 2588fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2589fa22f6d0SBarry Smith 2590fa22f6d0SBarry Smith if (hasop) { 2591fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2592887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259320f1ed55SBarry Smith } else { 259420f1ed55SBarry Smith /* 259520f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 259620f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2597887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 259820f1ed55SBarry Smith */ 259920f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 260020f1ed55SBarry Smith ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 260120f1ed55SBarry Smith ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 260220f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 260320f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2604887ee2caSBarry Smith if (omega == 1.0) { 260520f1ed55SBarry Smith for (i=0; i<n; i++) { 260620f1ed55SBarry Smith sl[i] = b[i] - diag[i]*x[i]; 260720f1ed55SBarry Smith } 260820f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2609887ee2caSBarry Smith } else { 2610887ee2caSBarry Smith for (i=0; i<n; i++) { 2611887ee2caSBarry Smith sl[i] = b[i] + scale*diag[i]*x[i]; 2612887ee2caSBarry Smith } 2613887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2614887ee2caSBarry Smith } 261520f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 261620f1ed55SBarry Smith ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr); 261720f1ed55SBarry Smith ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 261820f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 261920f1ed55SBarry Smith } 2620fa22f6d0SBarry Smith 2621fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2622fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2623fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2624fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2625fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2626fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2627fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2628fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2629fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2630fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2631effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2632fa22f6d0SBarry Smith 2633fa22f6d0SBarry Smith /* local sweep */ 263441f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2635fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2636ffe4fb16SHong Zhang } else { 2637ffe4fb16SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2638ffe4fb16SHong Zhang } 2639ffe4fb16SHong Zhang PetscFunctionReturn(0); 2640ffe4fb16SHong Zhang } 2641ffe4fb16SHong Zhang 2642ffe4fb16SHong Zhang #undef __FUNCT__ 264341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 264441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2645ffe4fb16SHong Zhang { 2646ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2647dfbe8321SBarry Smith PetscErrorCode ierr; 26482798e883SHong Zhang Vec lvec1,bb1; 26492798e883SHong Zhang 26502798e883SHong Zhang PetscFunctionBegin; 265177431f27SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2652b75cf396SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26532798e883SHong Zhang 2654c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 26552798e883SHong Zhang if ( flag & SOR_ZERO_INITIAL_GUESS ) { 265641f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26572798e883SHong Zhang its--; 26582798e883SHong Zhang } 26592798e883SHong Zhang 26602798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26612798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26622798e883SHong Zhang while (its--){ 2663ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26642798e883SHong Zhang 26652798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26662798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2667efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26682798e883SHong Zhang 2669ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26702798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2671ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26722798e883SHong Zhang 26732798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2674efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26752798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26762798e883SHong Zhang 2677ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26782798e883SHong Zhang 2679c14dc6b6SHong Zhang /* diagonal sweep */ 268041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 26812798e883SHong Zhang } 26822798e883SHong Zhang ierr = VecDestroy(lvec1);CHKERRQ(ierr); 26832798e883SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 2684c14dc6b6SHong Zhang } else { 2685c14dc6b6SHong Zhang SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2686c14dc6b6SHong Zhang } 26872798e883SHong Zhang PetscFunctionReturn(0); 26882798e883SHong Zhang } 26892798e883SHong Zhang 2690