xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision f3f98c53afac73c47ccd777984e7efd64cc4fab6)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2141f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay EXTERN_C_BEGIN
244a2ae208SSatish Balay #undef __FUNCT__
254a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
26be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
27a30f8f8cSSatish Balay {
28f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
29dfbe8321SBarry Smith   PetscErrorCode ierr;
30a30f8f8cSSatish Balay 
31a30f8f8cSSatish Balay   PetscFunctionBegin;
32a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   PetscFunctionReturn(0);
35a30f8f8cSSatish Balay }
36a30f8f8cSSatish Balay EXTERN_C_END
37a30f8f8cSSatish Balay 
38a30f8f8cSSatish Balay EXTERN_C_BEGIN
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
41be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
42a30f8f8cSSatish Balay {
43f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
44dfbe8321SBarry Smith   PetscErrorCode ierr;
45a30f8f8cSSatish Balay 
46a30f8f8cSSatish Balay   PetscFunctionBegin;
47a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   PetscFunctionReturn(0);
50a30f8f8cSSatish Balay }
51a30f8f8cSSatish Balay EXTERN_C_END
52a30f8f8cSSatish Balay 
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay #define CHUNKSIZE  10
55a30f8f8cSSatish Balay 
56a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
57a30f8f8cSSatish Balay { \
58a30f8f8cSSatish Balay  \
59a30f8f8cSSatish Balay     brow = row/bs;  \
60a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
61a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
62a30f8f8cSSatish Balay       bcol = col/bs; \
63a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
64a30f8f8cSSatish Balay       low = 0; high = nrow; \
65a30f8f8cSSatish Balay       while (high-low > 3) { \
66a30f8f8cSSatish Balay         t = (low+high)/2; \
67a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
68a30f8f8cSSatish Balay         else              low  = t; \
69a30f8f8cSSatish Balay       } \
70a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
71a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
72a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
73a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
74a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
75a30f8f8cSSatish Balay           else                    *bap  = value;  \
76a30f8f8cSSatish Balay           goto a_noinsert; \
77a30f8f8cSSatish Balay         } \
78a30f8f8cSSatish Balay       } \
79a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
80085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
81421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
82a30f8f8cSSatish Balay       N = nrow++ - 1;  \
83a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
84a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
85a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
86a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
87a30f8f8cSSatish Balay       } \
88a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
89a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
90a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
91a30f8f8cSSatish Balay       a_noinsert:; \
92a30f8f8cSSatish Balay     ailen[brow] = nrow; \
93a30f8f8cSSatish Balay }
94e5e170daSBarry Smith 
95a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
96a30f8f8cSSatish Balay { \
97a30f8f8cSSatish Balay     brow = row/bs;  \
98a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
99a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
100a30f8f8cSSatish Balay       bcol = col/bs; \
101a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
102a30f8f8cSSatish Balay       low = 0; high = nrow; \
103a30f8f8cSSatish Balay       while (high-low > 3) { \
104a30f8f8cSSatish Balay         t = (low+high)/2; \
105a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
106a30f8f8cSSatish Balay         else              low  = t; \
107a30f8f8cSSatish Balay       } \
108a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
109a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
110a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
111a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
112a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
113a30f8f8cSSatish Balay           else                    *bap  = value;  \
114a30f8f8cSSatish Balay           goto b_noinsert; \
115a30f8f8cSSatish Balay         } \
116a30f8f8cSSatish Balay       } \
117a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
118085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
119421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
120a30f8f8cSSatish Balay       N = nrow++ - 1;  \
121a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
122a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
123a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
124a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
125a30f8f8cSSatish Balay       } \
126a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
127a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
128a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
129a30f8f8cSSatish Balay       b_noinsert:; \
130a30f8f8cSSatish Balay     bilen[brow] = nrow; \
131a30f8f8cSSatish Balay }
132a30f8f8cSSatish Balay 
133a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
134a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
135a30f8f8cSSatish Balay */
1364a2ae208SSatish Balay #undef __FUNCT__
137dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
138dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
139a30f8f8cSSatish Balay {
140a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
141a30f8f8cSSatish Balay   MatScalar      value;
142b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
143dfbe8321SBarry Smith   PetscErrorCode ierr;
1441302d50aSBarry Smith   PetscInt       i,j,row,col;
145d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
146d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
147d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
148a30f8f8cSSatish Balay 
149a30f8f8cSSatish Balay   /* Some Variables required in the macro */
150a30f8f8cSSatish Balay   Mat            A = baij->A;
151a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1521302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
153a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay   Mat            B = baij->B;
156a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1571302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
158a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
159a30f8f8cSSatish Balay 
1601302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1611302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
162a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
163a30f8f8cSSatish Balay 
164a30f8f8cSSatish Balay   /* for stash */
165910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
166910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
167a30f8f8cSSatish Balay 
168a30f8f8cSSatish Balay   PetscFunctionBegin;
16971fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
170a30f8f8cSSatish Balay   if (!baij->donotstash){
17159ffdab8SBarry Smith     if (n > baij->n_loc) {
17259ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17659ffdab8SBarry Smith       baij->n_loc = n;
17759ffdab8SBarry Smith     }
17859ffdab8SBarry Smith     in_loc = baij->in_loc;
17959ffdab8SBarry Smith     v_loc  = baij->v_loc;
180a30f8f8cSSatish Balay   }
181a30f8f8cSSatish Balay 
182a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
183a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
185d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
186a30f8f8cSSatish Balay #endif
187a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
188a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
189a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
19001b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19101b2bd88SHong Zhang           if (a->ignore_ltriangular){
19201b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19301b2bd88SHong Zhang           } else {
1944e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19501b2bd88SHong Zhang           }
19601b2bd88SHong Zhang         }
197a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
198a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
199a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
200a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
201a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
202a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
203a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
204a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
206d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);}
207a30f8f8cSSatish Balay #endif
208a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
209a30f8f8cSSatish Balay           if (mat->was_assembled) {
210a30f8f8cSSatish Balay             if (!baij->colmap) {
211653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212a30f8f8cSSatish Balay             }
213a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
214a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21571730473SSatish Balay             col  = col - 1;
216a30f8f8cSSatish Balay #else
21771730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
218a30f8f8cSSatish Balay #endif
219a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
220a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
221a30f8f8cSSatish Balay               col =  in[j];
222a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
223a30f8f8cSSatish Balay               B = baij->B;
224a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
225a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
226a30f8f8cSSatish Balay               ba=b->a;
22771730473SSatish Balay             } else col += in[j]%bs;
228a30f8f8cSSatish Balay           } else col = in[j];
229a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
231a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232a30f8f8cSSatish Balay         }
233a30f8f8cSSatish Balay       }
234a30f8f8cSSatish Balay     } else {  /* off processor entry */
235a30f8f8cSSatish Balay       if (!baij->donotstash) {
236a30f8f8cSSatish Balay         n_loc = 0;
237a30f8f8cSSatish Balay         for (j=0; j<n; j++){
238f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
239a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
240a30f8f8cSSatish Balay           if (roworiented) {
241a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
242a30f8f8cSSatish Balay           } else {
243a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
244a30f8f8cSSatish Balay           }
245a30f8f8cSSatish Balay           n_loc++;
246a30f8f8cSSatish Balay         }
247b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
248a30f8f8cSSatish Balay       }
249a30f8f8cSSatish Balay     }
250a30f8f8cSSatish Balay   }
251a30f8f8cSSatish Balay   PetscFunctionReturn(0);
252a30f8f8cSSatish Balay }
253a30f8f8cSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
255dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
256dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
257a30f8f8cSSatish Balay {
2580880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
259f15d580aSBarry Smith   const MatScalar *value;
260f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
261*f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
262dfbe8321SBarry Smith   PetscErrorCode  ierr;
263899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
264899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
265d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2660880e062SHong Zhang 
267a30f8f8cSSatish Balay   PetscFunctionBegin;
2680880e062SHong Zhang   if(!barray) {
2690880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2700880e062SHong Zhang     baij->barray = barray;
2710880e062SHong Zhang   }
2720880e062SHong Zhang 
2730880e062SHong Zhang   if (roworiented) {
2740880e062SHong Zhang     stepval = (n-1)*bs;
2750880e062SHong Zhang   } else {
2760880e062SHong Zhang     stepval = (m-1)*bs;
2770880e062SHong Zhang   }
2780880e062SHong Zhang   for (i=0; i<m; i++) {
2790880e062SHong Zhang     if (im[i] < 0) continue;
2802515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
28177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2820880e062SHong Zhang #endif
2830880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2840880e062SHong Zhang       row = im[i] - rstart;
2850880e062SHong Zhang       for (j=0; j<n; j++) {
286*f3f98c53SJed Brown         if (im[i] > in[j]) {
287*f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
288*f3f98c53SJed Brown           else SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
289*f3f98c53SJed Brown         }
2900880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2910880e062SHong Zhang         if ((roworiented) && (n == 1)) {
292f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2930880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
294f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2950880e062SHong Zhang         } else { /* Here a copy is required */
2960880e062SHong Zhang           if (roworiented) {
2970880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2980880e062SHong Zhang           } else {
2990880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3000880e062SHong Zhang           }
3010880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3020880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3030880e062SHong Zhang               *barray++  = *value++;
3040880e062SHong Zhang             }
3050880e062SHong Zhang           }
3060880e062SHong Zhang           barray -=bs2;
3070880e062SHong Zhang         }
3080880e062SHong Zhang 
3090880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3100880e062SHong Zhang           col  = in[j] - cstart;
3110880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3120880e062SHong Zhang         }
3130880e062SHong Zhang         else if (in[j] < 0) continue;
3142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
31577431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3160880e062SHong Zhang #endif
3170880e062SHong Zhang         else {
3180880e062SHong Zhang           if (mat->was_assembled) {
3190880e062SHong Zhang             if (!baij->colmap) {
320653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3210880e062SHong Zhang             }
3220880e062SHong Zhang 
3232515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3240880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3251302d50aSBarry Smith             { PetscInt data;
3260880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3270880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3280880e062SHong Zhang             }
3290880e062SHong Zhang #else
3300880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #endif
3330880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3340880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3350880e062SHong Zhang             col  = (col - 1)/bs;
3360880e062SHong Zhang #else
3370880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3380880e062SHong Zhang #endif
3390880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3400880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3410880e062SHong Zhang               col =  in[j];
3420880e062SHong Zhang             }
3430880e062SHong Zhang           }
3440880e062SHong Zhang           else col = in[j];
345e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3460880e062SHong Zhang         }
3470880e062SHong Zhang       }
3480880e062SHong Zhang     } else {
3490880e062SHong Zhang       if (!baij->donotstash) {
3500880e062SHong Zhang         if (roworiented) {
3510880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3520880e062SHong Zhang         } else {
3530880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3540880e062SHong Zhang         }
3550880e062SHong Zhang       }
3560880e062SHong Zhang     }
3570880e062SHong Zhang   }
3580880e062SHong Zhang   PetscFunctionReturn(0);
359a30f8f8cSSatish Balay }
360a30f8f8cSSatish Balay 
3614a2ae208SSatish Balay #undef __FUNCT__
3624a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3631302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
364a30f8f8cSSatish Balay {
365f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3666849ba73SBarry Smith   PetscErrorCode ierr;
367d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
368d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
369a30f8f8cSSatish Balay 
370a30f8f8cSSatish Balay   PetscFunctionBegin;
371a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
37297e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
373d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
374a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
375a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
376a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
37797e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
378d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
379a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
380a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
381c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
382a30f8f8cSSatish Balay         } else {
383a30f8f8cSSatish Balay           if (!baij->colmap) {
384653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
385a30f8f8cSSatish Balay           }
386a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
387a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
388a30f8f8cSSatish Balay           data --;
389a30f8f8cSSatish Balay #else
390a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
391a30f8f8cSSatish Balay #endif
392a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
393a30f8f8cSSatish Balay           else {
394a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
395e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
396a30f8f8cSSatish Balay           }
397a30f8f8cSSatish Balay         }
398a30f8f8cSSatish Balay       }
399a30f8f8cSSatish Balay     } else {
40029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
401a30f8f8cSSatish Balay     }
402a30f8f8cSSatish Balay   }
403a30f8f8cSSatish Balay  PetscFunctionReturn(0);
404a30f8f8cSSatish Balay }
405a30f8f8cSSatish Balay 
4064a2ae208SSatish Balay #undef __FUNCT__
4074a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
408dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
409a30f8f8cSSatish Balay {
410a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
411dfbe8321SBarry Smith   PetscErrorCode ierr;
412a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
413a30f8f8cSSatish Balay 
414a30f8f8cSSatish Balay   PetscFunctionBegin;
415a30f8f8cSSatish Balay   if (baij->size == 1) {
416a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
417a30f8f8cSSatish Balay   } else {
418a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
419f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
421a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
422a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
423a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4247adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
425a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
426a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4270b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4280b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4290b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4300b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
431899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
432d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4330b8dc8d2SHong Zhang       MatScalar    *v;
4340b8dc8d2SHong Zhang 
43574ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
436d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4370b8dc8d2SHong Zhang       /* Amat */
4380b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4390b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4400b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4410b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4420b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4430b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4440b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4450b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4460b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4470b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4480b8dc8d2SHong Zhang               /* non-diagonal block */
4490b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4500b8dc8d2SHong Zhang             }
4510b8dc8d2SHong Zhang           }
4520b8dc8d2SHong Zhang         }
4530b8dc8d2SHong Zhang       }
4540b8dc8d2SHong Zhang       /* Bmat */
4550b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4560b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4570b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4580b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4590b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4600b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4610b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4620b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4630b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4640b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4650b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4660b8dc8d2SHong Zhang             }
4670b8dc8d2SHong Zhang           }
4680b8dc8d2SHong Zhang         }
4690b8dc8d2SHong Zhang       }
470d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4710b8dc8d2SHong Zhang       *norm = 0.0;
472d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4730b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4740b8dc8d2SHong Zhang       }
47574ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
476a30f8f8cSSatish Balay     } else {
47729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
478a30f8f8cSSatish Balay     }
479a30f8f8cSSatish Balay   }
480a30f8f8cSSatish Balay   PetscFunctionReturn(0);
481a30f8f8cSSatish Balay }
482a30f8f8cSSatish Balay 
4834a2ae208SSatish Balay #undef __FUNCT__
4844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
485dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
486a30f8f8cSSatish Balay {
487a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
488dfbe8321SBarry Smith   PetscErrorCode ierr;
4891302d50aSBarry Smith   PetscInt       nstash,reallocs;
490a30f8f8cSSatish Balay   InsertMode     addv;
491a30f8f8cSSatish Balay 
492a30f8f8cSSatish Balay   PetscFunctionBegin;
493a30f8f8cSSatish Balay   if (baij->donotstash) {
494a30f8f8cSSatish Balay     PetscFunctionReturn(0);
495a30f8f8cSSatish Balay   }
496a30f8f8cSSatish Balay 
497a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4987adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
499a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
50029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
501a30f8f8cSSatish Balay   }
502a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
503a30f8f8cSSatish Balay 
504d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5051e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
506a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5071e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
508a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5091e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
510a30f8f8cSSatish Balay   PetscFunctionReturn(0);
511a30f8f8cSSatish Balay }
512a30f8f8cSSatish Balay 
5134a2ae208SSatish Balay #undef __FUNCT__
5144a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
515dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
516a30f8f8cSSatish Balay {
517a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
518a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5196849ba73SBarry Smith   PetscErrorCode ierr;
52013f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
521e44c0bd4SBarry Smith   PetscInt       *row,*col;
522e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52313f74950SBarry Smith   PetscMPIInt    n;
524a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
525a30f8f8cSSatish Balay   MatScalar      *val;
526a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
527a30f8f8cSSatish Balay 
52891c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
529a30f8f8cSSatish Balay   PetscFunctionBegin;
530a30f8f8cSSatish Balay 
531a30f8f8cSSatish Balay   if (!baij->donotstash) {
532a30f8f8cSSatish Balay     while (1) {
533a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
534a30f8f8cSSatish Balay       if (!flg) break;
535a30f8f8cSSatish Balay 
536a30f8f8cSSatish Balay       for (i=0; i<n;) {
537a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
538a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
539a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
540a30f8f8cSSatish Balay         else       ncols = n-i;
541a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
542dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
543a30f8f8cSSatish Balay         i = j;
544a30f8f8cSSatish Balay       }
545a30f8f8cSSatish Balay     }
546a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
547a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
548a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
549a30f8f8cSSatish Balay        restore the original flags */
550a30f8f8cSSatish Balay     r1 = baij->roworiented;
551a30f8f8cSSatish Balay     r2 = a->roworiented;
55291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
553a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
554a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
556a30f8f8cSSatish Balay     while (1) {
557a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
558a30f8f8cSSatish Balay       if (!flg) break;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay       for (i=0; i<n;) {
561a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
562a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
563a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
564a30f8f8cSSatish Balay         else       ncols = n-i;
565dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
566a30f8f8cSSatish Balay         i = j;
567a30f8f8cSSatish Balay       }
568a30f8f8cSSatish Balay     }
569a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
570a30f8f8cSSatish Balay     baij->roworiented = r1;
571a30f8f8cSSatish Balay     a->roworiented    = r2;
57291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
573a30f8f8cSSatish Balay   }
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
577a30f8f8cSSatish Balay 
578a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
579a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
580a30f8f8cSSatish Balay   /*
581a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
582a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
583a30f8f8cSSatish Balay   */
584a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5857adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
586a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
587c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
588a30f8f8cSSatish Balay     }
589a30f8f8cSSatish Balay   }
590a30f8f8cSSatish Balay 
591a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
59240781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
593a30f8f8cSSatish Balay   }
59491c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
595a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
597a30f8f8cSSatish Balay 
59874ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
599a30f8f8cSSatish Balay   baij->rowvalues = 0;
6005222a1afSHong Zhang 
601a30f8f8cSSatish Balay   PetscFunctionReturn(0);
602a30f8f8cSSatish Balay }
603a30f8f8cSSatish Balay 
604dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6054a2ae208SSatish Balay #undef __FUNCT__
6064a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6076849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
608a30f8f8cSSatish Balay {
609a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
610dfbe8321SBarry Smith   PetscErrorCode    ierr;
611d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6121302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61332077d6dSBarry Smith   PetscTruth        iascii,isdraw;
614b0a32e0cSBarry Smith   PetscViewer       sviewer;
615f3ef73ceSBarry Smith   PetscViewerFormat format;
616a30f8f8cSSatish Balay 
617a30f8f8cSSatish Balay   PetscFunctionBegin;
61832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
619fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
62032077d6dSBarry Smith   if (iascii) {
621b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
622456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
623a30f8f8cSSatish Balay       MatInfo info;
6247adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
627d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
628d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
629a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
63077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
631a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
63277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
633b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63407d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
635a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63877431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
639a30f8f8cSSatish Balay       PetscFunctionReturn(0);
640c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
641c1490034SHong Zhang       PetscFunctionReturn(0);
642a30f8f8cSSatish Balay     }
643a30f8f8cSSatish Balay   }
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   if (isdraw) {
646b0a32e0cSBarry Smith     PetscDraw  draw;
647a30f8f8cSSatish Balay     PetscTruth isnull;
648b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
649b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
650a30f8f8cSSatish Balay   }
651a30f8f8cSSatish Balay 
652a30f8f8cSSatish Balay   if (size == 1) {
6537adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
654a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
655a30f8f8cSSatish Balay   } else {
656a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
657a30f8f8cSSatish Balay     Mat          A;
65865d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65965d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
660d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
661a30f8f8cSSatish Balay     MatScalar    *a;
662a30f8f8cSSatish Balay 
663f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6647adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
665a30f8f8cSSatish Balay     if (!rank) {
666f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
667a30f8f8cSSatish Balay     } else {
668f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
669a30f8f8cSSatish Balay     }
670f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
671d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
67252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
673a30f8f8cSSatish Balay 
674a30f8f8cSSatish Balay     /* copy over the A part */
67565d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
676a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6771302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
678a30f8f8cSSatish Balay 
679a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
680e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
681a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
682a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
683e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
684a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
685dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
686a30f8f8cSSatish Balay           col++; a += bs;
687a30f8f8cSSatish Balay         }
688a30f8f8cSSatish Balay       }
689a30f8f8cSSatish Balay     }
690a30f8f8cSSatish Balay     /* copy over the B part */
69165d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
69265d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
693a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
694e9f7bc9eSHong Zhang 
695e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
696a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
697a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
698a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
699a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
700799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
701a30f8f8cSSatish Balay           col++; a += bs;
702a30f8f8cSSatish Balay         }
703a30f8f8cSSatish Balay       }
704a30f8f8cSSatish Balay     }
705a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
706a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
707a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
708a30f8f8cSSatish Balay     /*
709a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
710b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
711a30f8f8cSSatish Balay     */
712b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71365d70643SHong Zhang     if (!rank) {
7147adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
715a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
716a30f8f8cSSatish Balay     }
717b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
718a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
719a30f8f8cSSatish Balay   }
720a30f8f8cSSatish Balay   PetscFunctionReturn(0);
721a30f8f8cSSatish Balay }
722a30f8f8cSSatish Balay 
7234a2ae208SSatish Balay #undef __FUNCT__
7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
726a30f8f8cSSatish Balay {
727dfbe8321SBarry Smith   PetscErrorCode ierr;
72832077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
729a30f8f8cSSatish Balay 
730a30f8f8cSSatish Balay   PetscFunctionBegin;
73132077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
732fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
733b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
734fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
73532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
736a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
737a30f8f8cSSatish Balay   } else {
7381302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
739a30f8f8cSSatish Balay   }
740a30f8f8cSSatish Balay   PetscFunctionReturn(0);
741a30f8f8cSSatish Balay }
742a30f8f8cSSatish Balay 
7434a2ae208SSatish Balay #undef __FUNCT__
7444a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
745dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
746a30f8f8cSSatish Balay {
747a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
748dfbe8321SBarry Smith   PetscErrorCode ierr;
749a30f8f8cSSatish Balay 
750a30f8f8cSSatish Balay   PetscFunctionBegin;
751a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
752d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
753a30f8f8cSSatish Balay #endif
754a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
755a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
756a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
757a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
758a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7599c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
760a30f8f8cSSatish Balay #else
76105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
762a30f8f8cSSatish Balay #endif
76305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
764a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
765a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76640781036SHong Zhang   if (baij->slvec0) {
76740781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76940781036SHong Zhang   }
77040781036SHong Zhang   if (baij->slvec1) {
77140781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
77240781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77340781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77440781036SHong Zhang   }
77540781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
77605b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
77705b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77805b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
779fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
780fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
781fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
78265460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78305b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
784a30f8f8cSSatish Balay #endif
78559ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78659ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
787899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
788a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
789901853e0SKris Buschelman 
790dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
792901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
793901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
794901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
795a30f8f8cSSatish Balay   PetscFunctionReturn(0);
796a30f8f8cSSatish Balay }
797a30f8f8cSSatish Balay 
7984a2ae208SSatish Balay #undef __FUNCT__
799547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
800547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
801547795f9SHong Zhang {
802547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
803547795f9SHong Zhang   PetscErrorCode ierr;
804547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
805547795f9SHong Zhang   PetscScalar    *x,*from;
806547795f9SHong Zhang 
807547795f9SHong Zhang   PetscFunctionBegin;
808547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
809547795f9SHong Zhang   if (nt != A->cmap->n) {
810547795f9SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
811547795f9SHong Zhang   }
812547795f9SHong Zhang 
813547795f9SHong Zhang   /* diagonal part */
814547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
815547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
816547795f9SHong Zhang 
817547795f9SHong Zhang   /* subdiagonal part */
818547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
819547795f9SHong Zhang 
820547795f9SHong Zhang   /* copy x into the vec slvec0 */
821547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
822547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
823547795f9SHong Zhang 
824547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
825547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
826547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
827547795f9SHong Zhang 
828547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
829547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
830547795f9SHong Zhang   /* supperdiagonal part */
831547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
832547795f9SHong Zhang   PetscFunctionReturn(0);
833547795f9SHong Zhang }
834547795f9SHong Zhang 
835547795f9SHong Zhang #undef __FUNCT__
836a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
837dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
838a9d4b620SHong Zhang {
839a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
840dfbe8321SBarry Smith   PetscErrorCode ierr;
841d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
842fa22f6d0SBarry Smith   PetscScalar    *x,*from;
843a9d4b620SHong Zhang 
844a9d4b620SHong Zhang   PetscFunctionBegin;
845a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
846d0f46423SBarry Smith   if (nt != A->cmap->n) {
847a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
848a9d4b620SHong Zhang   }
849a9d4b620SHong Zhang 
850a9d4b620SHong Zhang   /* diagonal part */
851a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
852fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
853a9d4b620SHong Zhang 
854a9d4b620SHong Zhang   /* subdiagonal part */
855a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
856fc165ae2SBarry Smith 
857a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8581ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8591ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
860a9d4b620SHong Zhang 
861fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
862fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8631ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
864fc165ae2SBarry Smith 
865fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
866ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
867a9d4b620SHong Zhang   /* supperdiagonal part */
868a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
869a9d4b620SHong Zhang   PetscFunctionReturn(0);
870a9d4b620SHong Zhang }
871a9d4b620SHong Zhang 
872a9d4b620SHong Zhang #undef __FUNCT__
87340781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
874dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
875a30f8f8cSSatish Balay {
876a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
877dfbe8321SBarry Smith   PetscErrorCode ierr;
8781302d50aSBarry Smith   PetscInt       nt;
879a30f8f8cSSatish Balay 
880a30f8f8cSSatish Balay   PetscFunctionBegin;
881a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
882d0f46423SBarry Smith   if (nt != A->cmap->n) {
88329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
884a30f8f8cSSatish Balay   }
885a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
886d0f46423SBarry Smith   if (nt != A->rmap->N) {
88729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
888a30f8f8cSSatish Balay   }
88965d70643SHong Zhang 
890ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
891b941877fSHong Zhang   /* do diagonal part */
892b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
893b941877fSHong Zhang   /* do supperdiagonal part */
894ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
895b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
896b941877fSHong Zhang   /* do subdiagonal part */
897b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
898ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
899ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
90065d70643SHong Zhang 
901a30f8f8cSSatish Balay   PetscFunctionReturn(0);
902a30f8f8cSSatish Balay }
903a30f8f8cSSatish Balay 
9044a2ae208SSatish Balay #undef __FUNCT__
9054a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
906dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
907a30f8f8cSSatish Balay {
908de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
909dfbe8321SBarry Smith   PetscErrorCode ierr;
910d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
911a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
912a9d4b620SHong Zhang 
913a9d4b620SHong Zhang   PetscFunctionBegin;
914a9d4b620SHong Zhang   /*
9157adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9167adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
917a9d4b620SHong Zhang   */
918a9d4b620SHong Zhang   /* diagonal part */
919a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9202dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
921a9d4b620SHong Zhang 
922a9d4b620SHong Zhang   /* subdiagonal part */
923a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
924a9d4b620SHong Zhang 
925a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9261ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9271ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
928a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9291ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
930a9d4b620SHong Zhang 
931ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9321ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
933ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
934a9d4b620SHong Zhang 
935a9d4b620SHong Zhang   /* supperdiagonal part */
936a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
937a9d4b620SHong Zhang 
938a9d4b620SHong Zhang   PetscFunctionReturn(0);
939a9d4b620SHong Zhang }
940a9d4b620SHong Zhang 
941a9d4b620SHong Zhang #undef __FUNCT__
942a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
943dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
944a9d4b620SHong Zhang {
945a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
946dfbe8321SBarry Smith   PetscErrorCode ierr;
947a30f8f8cSSatish Balay 
948a30f8f8cSSatish Balay   PetscFunctionBegin;
949ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
950b941877fSHong Zhang   /* do diagonal part */
951b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
952b941877fSHong Zhang   /* do supperdiagonal part */
953ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
954de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
955de8b6608SHong Zhang 
956b941877fSHong Zhang   /* do subdiagonal part */
957a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
958ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
959ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
960aa482183SHong Zhang 
961a30f8f8cSSatish Balay   PetscFunctionReturn(0);
962a30f8f8cSSatish Balay }
963a30f8f8cSSatish Balay 
964a30f8f8cSSatish Balay /*
965a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
966a30f8f8cSSatish Balay    diagonal block
967a30f8f8cSSatish Balay */
9684a2ae208SSatish Balay #undef __FUNCT__
9694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
970dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
971a30f8f8cSSatish Balay {
972a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
973dfbe8321SBarry Smith   PetscErrorCode ierr;
974a30f8f8cSSatish Balay 
975a30f8f8cSSatish Balay   PetscFunctionBegin;
976d0f46423SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
977a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
978a30f8f8cSSatish Balay   PetscFunctionReturn(0);
979a30f8f8cSSatish Balay }
980a30f8f8cSSatish Balay 
9814a2ae208SSatish Balay #undef __FUNCT__
9824a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
983f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
984a30f8f8cSSatish Balay {
985a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
986dfbe8321SBarry Smith   PetscErrorCode ierr;
987a30f8f8cSSatish Balay 
988a30f8f8cSSatish Balay   PetscFunctionBegin;
989f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
990f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
991a30f8f8cSSatish Balay   PetscFunctionReturn(0);
992a30f8f8cSSatish Balay }
993a30f8f8cSSatish Balay 
9944a2ae208SSatish Balay #undef __FUNCT__
9954a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9961302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
997a30f8f8cSSatish Balay {
998d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
999d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1000d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1001d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1002d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1003899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1004d0d4cfc2SHong Zhang 
1005a30f8f8cSSatish Balay   PetscFunctionBegin;
10064eeb8337SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1007d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1008d0d4cfc2SHong Zhang 
1009d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1010d0d4cfc2SHong Zhang     /*
1011d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1012d0d4cfc2SHong Zhang     */
1013d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1014d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1015d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1016d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1017d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1018d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1019d0d4cfc2SHong Zhang     }
102074ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1021d0d4cfc2SHong Zhang   }
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1024d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1025d0d4cfc2SHong Zhang 
1026d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1027d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1028d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1029d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1030d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1031d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1032d0d4cfc2SHong Zhang 
1033d0d4cfc2SHong Zhang   cmap  = mat->garray;
1034d0d4cfc2SHong Zhang   if (v  || idx) {
1035d0d4cfc2SHong Zhang     if (nztot) {
1036d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1037d0d4cfc2SHong Zhang       PetscInt imark = -1;
1038d0d4cfc2SHong Zhang       if (v) {
1039d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1040d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1041d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1042d0d4cfc2SHong Zhang           else break;
1043d0d4cfc2SHong Zhang         }
1044d0d4cfc2SHong Zhang         imark = i;
1045d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1046d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1047d0d4cfc2SHong Zhang       }
1048d0d4cfc2SHong Zhang       if (idx) {
1049d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1050d0d4cfc2SHong Zhang         if (imark > -1) {
1051d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1052d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1053d0d4cfc2SHong Zhang           }
1054d0d4cfc2SHong Zhang         } else {
1055d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1056d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1057d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1058d0d4cfc2SHong Zhang             else break;
1059d0d4cfc2SHong Zhang           }
1060d0d4cfc2SHong Zhang           imark = i;
1061d0d4cfc2SHong Zhang         }
1062d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1063d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1064d0d4cfc2SHong Zhang       }
1065d0d4cfc2SHong Zhang     } else {
1066d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1067d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1068d0d4cfc2SHong Zhang     }
1069d0d4cfc2SHong Zhang   }
1070d0d4cfc2SHong Zhang   *nz = nztot;
1071d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1072d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1073a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1074a30f8f8cSSatish Balay }
1075a30f8f8cSSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10781302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1079a30f8f8cSSatish Balay {
1080a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1081a30f8f8cSSatish Balay 
1082a30f8f8cSSatish Balay   PetscFunctionBegin;
1083abc0a331SBarry Smith   if (!baij->getrowactive) {
1084abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1085a30f8f8cSSatish Balay   }
1086a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1087a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1088a30f8f8cSSatish Balay }
1089a30f8f8cSSatish Balay 
10904a2ae208SSatish Balay #undef __FUNCT__
1091d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1092d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1093d0d4cfc2SHong Zhang {
1094d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1095d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1096d0d4cfc2SHong Zhang 
1097d0d4cfc2SHong Zhang   PetscFunctionBegin;
1098d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1099d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1100d0d4cfc2SHong Zhang }
1101d0d4cfc2SHong Zhang #undef __FUNCT__
1102d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1103d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1104d0d4cfc2SHong Zhang {
1105d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1106d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1107d0d4cfc2SHong Zhang 
1108d0d4cfc2SHong Zhang   PetscFunctionBegin;
1109d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1110d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1111d0d4cfc2SHong Zhang }
1112d0d4cfc2SHong Zhang 
1113d0d4cfc2SHong Zhang #undef __FUNCT__
111499cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
111599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
111699cafbc1SBarry Smith {
111799cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111899cafbc1SBarry Smith   PetscErrorCode ierr;
111999cafbc1SBarry Smith 
112099cafbc1SBarry Smith   PetscFunctionBegin;
112199cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
112299cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
112399cafbc1SBarry Smith   PetscFunctionReturn(0);
112499cafbc1SBarry Smith }
112599cafbc1SBarry Smith 
112699cafbc1SBarry Smith #undef __FUNCT__
112799cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
112899cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
112999cafbc1SBarry Smith {
113099cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
113199cafbc1SBarry Smith   PetscErrorCode ierr;
113299cafbc1SBarry Smith 
113399cafbc1SBarry Smith   PetscFunctionBegin;
113499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
113599cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
113699cafbc1SBarry Smith   PetscFunctionReturn(0);
113799cafbc1SBarry Smith }
113899cafbc1SBarry Smith 
113999cafbc1SBarry Smith #undef __FUNCT__
11404a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1141dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1142a30f8f8cSSatish Balay {
1143a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1144dfbe8321SBarry Smith   PetscErrorCode ierr;
1145a30f8f8cSSatish Balay 
1146a30f8f8cSSatish Balay   PetscFunctionBegin;
1147a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1148a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1149a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1150a30f8f8cSSatish Balay }
1151a30f8f8cSSatish Balay 
11524a2ae208SSatish Balay #undef __FUNCT__
11534a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1154dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1155a30f8f8cSSatish Balay {
1156a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1157a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1158dfbe8321SBarry Smith   PetscErrorCode ierr;
1159a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1160a30f8f8cSSatish Balay 
1161a30f8f8cSSatish Balay   PetscFunctionBegin;
1162d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1163a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1164a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1165a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1166a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1167a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1168a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1169a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1170a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1171a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1172a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1173a30f8f8cSSatish Balay     info->memory       = isend[3];
1174a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1175a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11767adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1178a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1179a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1180a30f8f8cSSatish Balay     info->memory       = irecv[3];
1181a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1182a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11837adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1184a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1185a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1186a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1187a30f8f8cSSatish Balay     info->memory       = irecv[3];
1188a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1189a30f8f8cSSatish Balay   } else {
119077431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1191a30f8f8cSSatish Balay   }
1192a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1193a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1194a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1195a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1196a30f8f8cSSatish Balay }
1197a30f8f8cSSatish Balay 
11984a2ae208SSatish Balay #undef __FUNCT__
11994a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
12004e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1201a30f8f8cSSatish Balay {
1202a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1203d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1204dfbe8321SBarry Smith   PetscErrorCode ierr;
1205a30f8f8cSSatish Balay 
1206a30f8f8cSSatish Balay   PetscFunctionBegin;
1207e98b92d7SKris Buschelman   switch (op) {
1208512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1209e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
121028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1211a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1212e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12134e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12144e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1215e98b92d7SKris Buschelman     break;
1216e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12174e0d8c25SBarry Smith     a->roworiented = flg;
12184e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12194e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1220e98b92d7SKris Buschelman     break;
12214e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1222290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1223e98b92d7SKris Buschelman     break;
1224e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12254e0d8c25SBarry Smith     a->donotstash = flg;
1226e98b92d7SKris Buschelman     break;
1227e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12284e0d8c25SBarry Smith     a->ht_flag = flg;
1229e98b92d7SKris Buschelman     break;
12309a4540c5SBarry Smith   case MAT_HERMITIAN:
1231547795f9SHong Zhang     if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1232eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1233547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1234eeffb40dSHong Zhang     break;
123577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1236eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1237eeffb40dSHong Zhang     break;
123877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1239eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1240eeffb40dSHong Zhang     break;
12419a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12424e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1243290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
124477e54ba9SKris Buschelman     break;
1245d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12464e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1247d0d4cfc2SHong Zhang     break;
1248d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12494e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1250d0d4cfc2SHong Zhang     break;
1251d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12524e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1253d0d4cfc2SHong Zhang     break;
1254e98b92d7SKris Buschelman   default:
1255ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1256a30f8f8cSSatish Balay   }
1257a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12618115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1262fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1263a30f8f8cSSatish Balay {
1264dfbe8321SBarry Smith   PetscErrorCode ierr;
1265a30f8f8cSSatish Balay   PetscFunctionBegin;
1266815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1267999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1268fc4dec0aSBarry Smith   }
12698115998fSBarry Smith   PetscFunctionReturn(0);
1270a30f8f8cSSatish Balay }
1271a30f8f8cSSatish Balay 
12724a2ae208SSatish Balay #undef __FUNCT__
12734a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1274dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1275a30f8f8cSSatish Balay {
1276a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1277a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1278dfbe8321SBarry Smith   PetscErrorCode ierr;
12795e90f9d9SHong Zhang   PetscInt       nv,m,n;
1280b3bf805bSHong Zhang   PetscTruth     flg;
1281a30f8f8cSSatish Balay 
1282a30f8f8cSSatish Balay   PetscFunctionBegin;
1283a30f8f8cSSatish Balay   if (ll != rr){
1284b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1285b3bf805bSHong Zhang     if (!flg)
128629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1287a30f8f8cSSatish Balay   }
1288b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1289b3bf805bSHong Zhang 
12905e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
12915e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1292b3bf805bSHong Zhang 
12935e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
12945e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12955e90f9d9SHong Zhang 
1296ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12975e90f9d9SHong Zhang 
12985e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1299a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13005e90f9d9SHong Zhang 
13015e90f9d9SHong Zhang   /* scale the diagonal part */
1302a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1303a30f8f8cSSatish Balay 
13045e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1305ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1307a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1308a30f8f8cSSatish Balay }
1309a30f8f8cSSatish Balay 
13104a2ae208SSatish Balay #undef __FUNCT__
13114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1312dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1313a30f8f8cSSatish Balay {
1314f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1315dfbe8321SBarry Smith   PetscErrorCode ierr;
1316a30f8f8cSSatish Balay 
1317a30f8f8cSSatish Balay   PetscFunctionBegin;
1318a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1319a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1320a30f8f8cSSatish Balay }
1321a30f8f8cSSatish Balay 
13226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1323a30f8f8cSSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1326dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1327a30f8f8cSSatish Balay {
1328a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1329a30f8f8cSSatish Balay   Mat            a,b,c,d;
1330a30f8f8cSSatish Balay   PetscTruth     flg;
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332a30f8f8cSSatish Balay 
1333a30f8f8cSSatish Balay   PetscFunctionBegin;
1334a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1335a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1336a30f8f8cSSatish Balay 
1337a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1338abc0a331SBarry Smith   if (flg) {
1339a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1340a30f8f8cSSatish Balay   }
13417adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1342a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1343a30f8f8cSSatish Balay }
1344a30f8f8cSSatish Balay 
13454a2ae208SSatish Balay #undef __FUNCT__
13463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13473c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13483c896bc6SHong Zhang {
13493c896bc6SHong Zhang   PetscErrorCode ierr;
13503c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13513c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13523c896bc6SHong Zhang 
13533c896bc6SHong Zhang   PetscFunctionBegin;
13543c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13553c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1356d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13573c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1358d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13593c896bc6SHong Zhang   } else {
13603c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13613c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13623c896bc6SHong Zhang   }
13633c896bc6SHong Zhang   PetscFunctionReturn(0);
13643c896bc6SHong Zhang }
13653c896bc6SHong Zhang 
13663c896bc6SHong Zhang #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1369273d9f13SBarry Smith {
1370dfbe8321SBarry Smith   PetscErrorCode ierr;
1371273d9f13SBarry Smith 
1372273d9f13SBarry Smith   PetscFunctionBegin;
1373db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1374273d9f13SBarry Smith   PetscFunctionReturn(0);
1375273d9f13SBarry Smith }
1376a5e6ed63SBarry Smith 
13774fe895cdSHong Zhang #include "petscblaslapack.h"
13784fe895cdSHong Zhang #undef __FUNCT__
13794fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13804fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13814fe895cdSHong Zhang {
13824fe895cdSHong Zhang   PetscErrorCode ierr;
13834fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13844fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13854fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13864fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13874fe895cdSHong Zhang 
13884fe895cdSHong Zhang   PetscFunctionBegin;
13894fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13904fe895cdSHong Zhang     PetscScalar alpha = a;
13914fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13924fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13930805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13944fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13954fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13964fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13970805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13984fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13994fe895cdSHong Zhang   } else {
1400d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14014fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1402d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14034fe895cdSHong Zhang   }
14044fe895cdSHong Zhang   PetscFunctionReturn(0);
14054fe895cdSHong Zhang }
14064fe895cdSHong Zhang 
1407a5e6ed63SBarry Smith #undef __FUNCT__
14086363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
14096363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
14106363de48SJed Brown {
14116363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
14126363de48SJed Brown   PetscInt        rbs,cbs;
14136363de48SJed Brown   PetscErrorCode  ierr;
14146363de48SJed Brown 
14156363de48SJed Brown   PetscFunctionBegin;
14166363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14176363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14186363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14196363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
14206363de48SJed Brown   if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
14216363de48SJed Brown   if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14226363de48SJed Brown   PetscFunctionReturn(0);
14236363de48SJed Brown }
14246363de48SJed Brown 
14256363de48SJed Brown #undef __FUNCT__
1426a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14271302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1428a5e6ed63SBarry Smith {
14296849ba73SBarry Smith   PetscErrorCode ierr;
14301302d50aSBarry Smith   PetscInt       i;
1431a5e6ed63SBarry Smith   PetscTruth     flg;
1432a5e6ed63SBarry Smith 
14336849ba73SBarry Smith   PetscFunctionBegin;
1434a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1435a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1436a5e6ed63SBarry Smith     if (!flg) {
14371302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1438a5e6ed63SBarry Smith     }
1439a5e6ed63SBarry Smith   }
1440a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1441a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1442a5e6ed63SBarry Smith }
1443a5e6ed63SBarry Smith 
1444a5e6ed63SBarry Smith 
1445a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1446a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1447a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1450a9d4b620SHong Zhang        MatMult_MPISBAIJ,
145197304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1452431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1453431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1454a30f8f8cSSatish Balay        0,
1455a30f8f8cSSatish Balay        0,
1456a30f8f8cSSatish Balay        0,
145797304618SKris Buschelman /*10*/ 0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
146041f059aeSBarry Smith        MatSOR_MPISBAIJ,
1461a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
146297304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1463a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1464a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1466a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
146797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1468a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1470a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1471d519adbfSMatthew Knepley /*24*/ 0,
1472a30f8f8cSSatish Balay        0,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        0,
1475a30f8f8cSSatish Balay        0,
1476d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1477b5df2d14SHong Zhang        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
1481d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        0,
1486d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1487a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1488d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1489a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14903c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1491d519adbfSMatthew Knepley /*44*/ 0,
1492a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1493a30f8f8cSSatish Balay        0,
1494a30f8f8cSSatish Balay        0,
1495a30f8f8cSSatish Balay        0,
14966363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1497a30f8f8cSSatish Balay        0,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        0,
1501d519adbfSMatthew Knepley /*54*/ 0,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1506d519adbfSMatthew Knepley /*59*/ 0,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        0,
1509357abbc8SBarry Smith        0,
151024d5174aSHong Zhang        0,
1511d519adbfSMatthew Knepley /*64*/ 0,
151224d5174aSHong Zhang        0,
151324d5174aSHong Zhang        0,
151424d5174aSHong Zhang        0,
151524d5174aSHong Zhang        0,
1516d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
151724d5174aSHong Zhang        0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
1521d519adbfSMatthew Knepley /*74*/ 0,
152297304618SKris Buschelman        0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
1526d519adbfSMatthew Knepley /*79*/ 0,
152797304618SKris Buschelman        0,
152897304618SKris Buschelman        0,
152997304618SKris Buschelman        0,
1530865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1531d519adbfSMatthew Knepley /*84*/ 0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536d519adbfSMatthew Knepley /*89*/ 0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
1540865e5f61SKris Buschelman        0,
1541d519adbfSMatthew Knepley /*94*/ 0,
1542865e5f61SKris Buschelman        0,
1543865e5f61SKris Buschelman        0,
154499cafbc1SBarry Smith        0,
154599cafbc1SBarry Smith        0,
1546d519adbfSMatthew Knepley /*99*/ 0,
154799cafbc1SBarry Smith        0,
154899cafbc1SBarry Smith        0,
154999cafbc1SBarry Smith        0,
155099cafbc1SBarry Smith        0,
1551d519adbfSMatthew Knepley /*104*/0,
155299cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1553d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1554d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1555d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
155699cafbc1SBarry Smith };
1557a30f8f8cSSatish Balay 
1558a30f8f8cSSatish Balay 
1559a30f8f8cSSatish Balay EXTERN_C_BEGIN
15604a2ae208SSatish Balay #undef __FUNCT__
15614a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1562be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1563a30f8f8cSSatish Balay {
1564a30f8f8cSSatish Balay   PetscFunctionBegin;
1565a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1566a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1567a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1568a30f8f8cSSatish Balay }
1569a30f8f8cSSatish Balay EXTERN_C_END
1570a30f8f8cSSatish Balay 
1571273d9f13SBarry Smith EXTERN_C_BEGIN
15724a2ae208SSatish Balay #undef __FUNCT__
1573a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1574be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1575a23d5eceSKris Buschelman {
1576a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1577dfbe8321SBarry Smith   PetscErrorCode ierr;
1578db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1579a23d5eceSKris Buschelman 
1580a23d5eceSKris Buschelman   PetscFunctionBegin;
1581db4efbfdSBarry Smith   if (bs < 0){
15827adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1583db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15848c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1585db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1586db4efbfdSBarry Smith   }
1587db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
1588db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1589db4efbfdSBarry Smith   }
1590db4efbfdSBarry Smith   bs = newbs;
1591a23d5eceSKris Buschelman 
1592a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1593a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159477431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159577431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1596899cda47SBarry Smith 
1597d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
159826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
159926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1600899cda47SBarry Smith 
1601a23d5eceSKris Buschelman   if (d_nnz) {
1602d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160377431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1604a23d5eceSKris Buschelman     }
1605a23d5eceSKris Buschelman   }
1606a23d5eceSKris Buschelman   if (o_nnz) {
1607d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
160877431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1609a23d5eceSKris Buschelman     }
1610a23d5eceSKris Buschelman   }
1611a23d5eceSKris Buschelman 
1612a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1613d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1614d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1615d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1616d0f46423SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1617a23d5eceSKris Buschelman   }
1618a23d5eceSKris Buschelman 
1619d0f46423SBarry Smith   B->rmap->bs  = bs;
1620a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1621a23d5eceSKris Buschelman   b->mbs = mbs;
1622a23d5eceSKris Buschelman   b->nbs = mbs;
1623a23d5eceSKris Buschelman   b->Mbs = Mbs;
1624a23d5eceSKris Buschelman   b->Nbs = Mbs;
1625a23d5eceSKris Buschelman 
1626a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1627d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1628a23d5eceSKris Buschelman   }
1629d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1630d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1631a23d5eceSKris Buschelman 
1632d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1633d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1634a23d5eceSKris Buschelman 
1635526dfc15SBarry Smith   if (!B->preallocated) {
1636f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1637d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16389c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
163952e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1640f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1641d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16424aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
164352e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1644533163c2SBarry Smith     ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->bstash);CHKERRQ(ierr);
1645526dfc15SBarry Smith   }
1646a23d5eceSKris Buschelman 
1647526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1648526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1649526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1650a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1651a23d5eceSKris Buschelman }
1652a23d5eceSKris Buschelman EXTERN_C_END
1653a23d5eceSKris Buschelman 
16545c9eb25fSBarry Smith EXTERN_C_BEGIN
1655611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1656611f576cSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_mumps(Mat,MatFactorType,Mat*);
1657611f576cSBarry Smith #endif
1658611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16595c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1660611f576cSBarry Smith #endif
1661b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1662b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1663b5e56a35SBarry Smith #endif
16645c9eb25fSBarry Smith EXTERN_C_END
16655c9eb25fSBarry Smith 
16660bad9183SKris Buschelman /*MC
1667fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16680bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16690bad9183SKris Buschelman 
16700bad9183SKris Buschelman    Options Database Keys:
16710bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16720bad9183SKris Buschelman 
16730bad9183SKris Buschelman   Level: beginner
16740bad9183SKris Buschelman 
16750bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16760bad9183SKris Buschelman M*/
16770bad9183SKris Buschelman 
1678a23d5eceSKris Buschelman EXTERN_C_BEGIN
1679a23d5eceSKris Buschelman #undef __FUNCT__
16804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1681be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1682b5df2d14SHong Zhang {
1683b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1684dfbe8321SBarry Smith   PetscErrorCode ierr;
1685b5df2d14SHong Zhang   PetscTruth     flg;
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang   PetscFunctionBegin;
1688b5df2d14SHong Zhang 
168938f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1690b0a32e0cSBarry Smith   B->data = (void*)b;
1691b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1692b5df2d14SHong Zhang 
1693b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1694b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1695b5df2d14SHong Zhang   B->mapping         = 0;
1696b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1697b5df2d14SHong Zhang 
1698b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16997adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
17007adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1701b5df2d14SHong Zhang 
1702b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1703899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1704b5df2d14SHong Zhang 
1705b5df2d14SHong Zhang   /* build cache for off array entries formed */
17067adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1707b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1708b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1709b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1710b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang   /* stuff used in block assembly */
1713b5df2d14SHong Zhang   b->barray       = 0;
1714b5df2d14SHong Zhang 
1715b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1716b5df2d14SHong Zhang   b->lvec         = 0;
1717b5df2d14SHong Zhang   b->Mvctx        = 0;
171840781036SHong Zhang   b->slvec0       = 0;
171940781036SHong Zhang   b->slvec0b      = 0;
172040781036SHong Zhang   b->slvec1       = 0;
172140781036SHong Zhang   b->slvec1a      = 0;
172240781036SHong Zhang   b->slvec1b      = 0;
172340781036SHong Zhang   b->sMvctx       = 0;
1724b5df2d14SHong Zhang 
1725b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1726b5df2d14SHong Zhang   b->rowindices   = 0;
1727b5df2d14SHong Zhang   b->rowvalues    = 0;
1728b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1729b5df2d14SHong Zhang 
1730b5df2d14SHong Zhang   /* hash table stuff */
1731b5df2d14SHong Zhang   b->ht           = 0;
1732b5df2d14SHong Zhang   b->hd           = 0;
1733b5df2d14SHong Zhang   b->ht_size      = 0;
1734b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1735b5df2d14SHong Zhang   b->ht_fact      = 0;
1736b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1737b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1738b5df2d14SHong Zhang 
173959ffdab8SBarry Smith   b->in_loc       = 0;
174059ffdab8SBarry Smith   b->v_loc        = 0;
174159ffdab8SBarry Smith   b->n_loc        = 0;
17427adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17438c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1744b5df2d14SHong Zhang     if (flg) {
1745f6275e2eSBarry Smith       PetscReal fact = 1.39;
17464e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17478c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1748b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1749b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17501e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1751b5df2d14SHong Zhang     }
17528c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17538c07d4e3SBarry Smith 
1754b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1755ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1756b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1757b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1758b5e56a35SBarry Smith #endif
1759611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1760ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
17615c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_mumps",
17625c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_mumps);CHKERRQ(ierr);
1763611f576cSBarry Smith #endif
1764611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1765ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17665c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17675c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1768611f576cSBarry Smith #endif
1769b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1770b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1771b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1772b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1773b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1774b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1775b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1776b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1777b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1778a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1779a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1780a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
178123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
178223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
178323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
178423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
178517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1786b5df2d14SHong Zhang   PetscFunctionReturn(0);
1787b5df2d14SHong Zhang }
1788273d9f13SBarry Smith EXTERN_C_END
1789b5df2d14SHong Zhang 
1790209238afSKris Buschelman /*MC
1791002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1792209238afSKris Buschelman 
1793209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1794209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1795209238afSKris Buschelman 
1796209238afSKris Buschelman    Options Database Keys:
1797209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1798209238afSKris Buschelman 
1799209238afSKris Buschelman   Level: beginner
1800209238afSKris Buschelman 
1801209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1802209238afSKris Buschelman M*/
1803209238afSKris Buschelman 
1804209238afSKris Buschelman EXTERN_C_BEGIN
1805209238afSKris Buschelman #undef __FUNCT__
1806209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1808dfbe8321SBarry Smith {
18096849ba73SBarry Smith   PetscErrorCode ierr;
18101302d50aSBarry Smith   PetscMPIInt    size;
1811209238afSKris Buschelman 
1812209238afSKris Buschelman   PetscFunctionBegin;
18137adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1814209238afSKris Buschelman   if (size == 1) {
1815209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1816209238afSKris Buschelman   } else {
1817209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1818209238afSKris Buschelman   }
1819209238afSKris Buschelman   PetscFunctionReturn(0);
1820209238afSKris Buschelman }
1821209238afSKris Buschelman EXTERN_C_END
1822209238afSKris Buschelman 
18234a2ae208SSatish Balay #undef __FUNCT__
18244a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1825b5df2d14SHong Zhang /*@C
1826b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1827b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1828b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1829b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1830b5df2d14SHong Zhang 
1831b5df2d14SHong Zhang    Collective on Mat
1832b5df2d14SHong Zhang 
1833b5df2d14SHong Zhang    Input Parameters:
1834b5df2d14SHong Zhang +  A - the matrix
1835b5df2d14SHong Zhang .  bs   - size of blockk
1836b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1837b5df2d14SHong Zhang            submatrix  (same for all local rows)
1838b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18396d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18406d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18416d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1842b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1843b5df2d14SHong Zhang            submatrix (same for all local rows).
1844b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1845b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1846b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1847b5df2d14SHong Zhang 
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang    Options Database Keys:
1850b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1851b5df2d14SHong Zhang                      block calculations (much slower)
1852b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1853b5df2d14SHong Zhang 
1854b5df2d14SHong Zhang    Notes:
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1857b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1858b5df2d14SHong Zhang 
185949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
186049a6f317SBarry Smith 
1861b5df2d14SHong Zhang    Storage Information:
1862b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1863b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1864b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1865b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1866b5df2d14SHong Zhang 
1867b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1868b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1869b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1870b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1871b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1872b5df2d14SHong Zhang 
1873aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1874aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1875aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1876aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1877aa95bbe8SBarry Smith 
1878b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1879b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1880b5df2d14SHong Zhang 
1881b5df2d14SHong Zhang .vb
1882b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1883b5df2d14SHong Zhang           -------------------
1884b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1885b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1886b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1887b5df2d14SHong Zhang           -------------------
1888b5df2d14SHong Zhang .ve
1889b5df2d14SHong Zhang 
1890b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1891b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18926d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18936d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1894b5df2d14SHong Zhang 
18956d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18966d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1897b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1898b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1899b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1900b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1901b5df2d14SHong Zhang    matrices.
1902b5df2d14SHong Zhang 
1903b5df2d14SHong Zhang    Level: intermediate
1904b5df2d14SHong Zhang 
1905b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1906b5df2d14SHong Zhang 
1907b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1908b5df2d14SHong Zhang @*/
1909be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1910b5df2d14SHong Zhang {
19111302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1912b5df2d14SHong Zhang 
1913b5df2d14SHong Zhang   PetscFunctionBegin;
1914a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1915a23d5eceSKris Buschelman   if (f) {
1916a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1917b5df2d14SHong Zhang   }
1918b5df2d14SHong Zhang   PetscFunctionReturn(0);
1919b5df2d14SHong Zhang }
1920b5df2d14SHong Zhang 
19214a2ae208SSatish Balay #undef __FUNCT__
19224a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1923a30f8f8cSSatish Balay /*@C
1924a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1925a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1926a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1927a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1928a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1929a30f8f8cSSatish Balay 
1930a30f8f8cSSatish Balay    Collective on MPI_Comm
1931a30f8f8cSSatish Balay 
1932a30f8f8cSSatish Balay    Input Parameters:
1933a30f8f8cSSatish Balay +  comm - MPI communicator
1934a30f8f8cSSatish Balay .  bs   - size of blockk
1935a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1936a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1937a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1938a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1939a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1940a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1941a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1942a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1943a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1944a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1945a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19466d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19476d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19486d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1949a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1950a30f8f8cSSatish Balay            submatrix (same for all local rows).
1951a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1952a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1953a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1954a30f8f8cSSatish Balay 
1955a30f8f8cSSatish Balay    Output Parameter:
1956a30f8f8cSSatish Balay .  A - the matrix
1957a30f8f8cSSatish Balay 
1958a30f8f8cSSatish Balay    Options Database Keys:
1959a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1960a30f8f8cSSatish Balay                      block calculations (much slower)
1961a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1962a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1963a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1964a30f8f8cSSatish Balay 
1965175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1966ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1967175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1968175b88e8SBarry Smith 
1969a30f8f8cSSatish Balay    Notes:
1970d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19716d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1972d1be2dadSMatthew Knepley 
1973a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1974a30f8f8cSSatish Balay    (possibly both).
1975a30f8f8cSSatish Balay 
1976a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1977a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1978a30f8f8cSSatish Balay 
197949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
198049a6f317SBarry Smith 
1981a30f8f8cSSatish Balay    Storage Information:
1982a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1983a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1984a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1985a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1988a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1989a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1990a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1991a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1992a30f8f8cSSatish Balay 
1993a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1994a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1995a30f8f8cSSatish Balay 
1996a30f8f8cSSatish Balay .vb
1997a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1998a30f8f8cSSatish Balay           -------------------
1999a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
2000a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
2001a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
2002a30f8f8cSSatish Balay           -------------------
2003a30f8f8cSSatish Balay .ve
2004a30f8f8cSSatish Balay 
2005a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
2006a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
20076d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
20086d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
2009a30f8f8cSSatish Balay 
20106d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
20116d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
2012a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2013a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
2014a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2015a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
2016a30f8f8cSSatish Balay    matrices.
2017a30f8f8cSSatish Balay 
2018a30f8f8cSSatish Balay    Level: intermediate
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2021a30f8f8cSSatish Balay 
2022a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2023a30f8f8cSSatish Balay @*/
2024a30f8f8cSSatish Balay 
2025be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2026a30f8f8cSSatish Balay {
20276849ba73SBarry Smith   PetscErrorCode ierr;
20281302d50aSBarry Smith   PetscMPIInt    size;
2029a30f8f8cSSatish Balay 
2030a30f8f8cSSatish Balay   PetscFunctionBegin;
2031f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2032f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2033273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2034273d9f13SBarry Smith   if (size > 1) {
2035b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2036b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2037273d9f13SBarry Smith   } else {
2038273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2039273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2040273d9f13SBarry Smith   }
2041a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2042a30f8f8cSSatish Balay }
2043a30f8f8cSSatish Balay 
2044a30f8f8cSSatish Balay 
20454a2ae208SSatish Balay #undef __FUNCT__
20464a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20476849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2048a30f8f8cSSatish Balay {
2049a30f8f8cSSatish Balay   Mat            mat;
2050a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2051dfbe8321SBarry Smith   PetscErrorCode ierr;
2052d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2053387bc808SHong Zhang   PetscScalar    *array;
2054a30f8f8cSSatish Balay 
2055a30f8f8cSSatish Balay   PetscFunctionBegin;
2056a30f8f8cSSatish Balay   *newmat       = 0;
20577adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2058d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20597adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20601d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
206126283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
206226283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2063e1b6402fSHong Zhang 
206482327fa8SHong Zhang   mat->factor       = matin->factor;
2065273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
206682327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20677fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20687fff6886SHong Zhang 
2069b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2070a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2071a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2072a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2073a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2074a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2075a30f8f8cSSatish Balay 
2076899cda47SBarry Smith 
2077a30f8f8cSSatish Balay   a->size         = oldmat->size;
2078a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2079a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2080a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2081a30f8f8cSSatish Balay   a->rowindices   = 0;
2082a30f8f8cSSatish Balay   a->rowvalues    = 0;
2083a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2084a30f8f8cSSatish Balay   a->barray       = 0;
2085899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2086899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2087899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2088899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2089a30f8f8cSSatish Balay 
2090a30f8f8cSSatish Balay   /* hash table stuff */
2091a30f8f8cSSatish Balay   a->ht           = 0;
2092a30f8f8cSSatish Balay   a->hd           = 0;
2093a30f8f8cSSatish Balay   a->ht_size      = 0;
2094a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2095a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2096a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2097a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2098a30f8f8cSSatish Balay 
2099899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2100a30f8f8cSSatish Balay   if (oldmat->colmap) {
2101a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2102a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2103a30f8f8cSSatish Balay #else
21041302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
210552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
21061302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2107a30f8f8cSSatish Balay #endif
2108a30f8f8cSSatish Balay   } else a->colmap = 0;
2109387bc808SHong Zhang 
2110a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
21111302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
211252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
21131302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2114a30f8f8cSSatish Balay   } else a->garray = 0;
2115a30f8f8cSSatish Balay 
2116533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2117a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2119a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
212182327fa8SHong Zhang 
212282327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
212352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
212482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
212552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2126387bc808SHong Zhang 
2127387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21281ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2129387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2130387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21311ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21321ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2133387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21341ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
213552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
213652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
213752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
213852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
213952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2140387bc808SHong Zhang 
2141387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2142387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2143387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
214452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
214582327fa8SHong Zhang 
2146a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
214752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2148a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
214952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21507adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2151a30f8f8cSSatish Balay   *newmat = mat;
2152a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2153a30f8f8cSSatish Balay }
2154a30f8f8cSSatish Balay 
2155a30f8f8cSSatish Balay #include "petscsys.h"
2156a30f8f8cSSatish Balay 
21574a2ae208SSatish Balay #undef __FUNCT__
21584a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2159a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2160a30f8f8cSSatish Balay {
2161a30f8f8cSSatish Balay   Mat            A;
21626849ba73SBarry Smith   PetscErrorCode ierr;
216313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
216487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2165a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2166a30f8f8cSSatish Balay   MPI_Status     status;
2167e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
216813f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21692fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21701302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21711302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21721302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
217313f74950SBarry Smith   int            fd;
2174a30f8f8cSSatish Balay 
2175a30f8f8cSSatish Balay   PetscFunctionBegin;
217677925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21778c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21788c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2179a30f8f8cSSatish Balay 
2180a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2181a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2182a30f8f8cSSatish Balay   if (!rank) {
2183b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2184a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2185552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2186a30f8f8cSSatish Balay     if (header[3] < 0) {
218729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2188a30f8f8cSSatish Balay     }
2189a30f8f8cSSatish Balay   }
2190a30f8f8cSSatish Balay 
2191a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2193a30f8f8cSSatish Balay 
219429bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2195a30f8f8cSSatish Balay 
2196a30f8f8cSSatish Balay   /*
2197a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2198a30f8f8cSSatish Balay      divisible by the blocksize
2199a30f8f8cSSatish Balay   */
2200a30f8f8cSSatish Balay   Mbs        = M/bs;
2201a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2202a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2203a30f8f8cSSatish Balay   else                  Mbs++;
2204a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
22051e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2206a30f8f8cSSatish Balay   }
2207a30f8f8cSSatish Balay 
2208a30f8f8cSSatish Balay   /* determine ownership of all rows */
2209a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2210a30f8f8cSSatish Balay   m          = mbs*bs;
221174ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2212e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2213e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2214a30f8f8cSSatish Balay   rowners[0] = 0;
2215a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2216a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2217a30f8f8cSSatish Balay   rstart = rowners[rank];
2218a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2219a30f8f8cSSatish Balay 
2220a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
22212fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay   if (!rank) {
22231302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2224a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2225a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2226a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2227a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2228a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2230a30f8f8cSSatish Balay   } else {
2231a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay   }
2233a30f8f8cSSatish Balay 
22340222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2235a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22361302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22371302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2238a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2239a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2240a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2241a30f8f8cSSatish Balay       }
2242a30f8f8cSSatish Balay     }
2243a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2244a30f8f8cSSatish Balay 
2245a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2246a30f8f8cSSatish Balay     maxnz = 0;
2247a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2248a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2249a30f8f8cSSatish Balay     }
22501302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2251a30f8f8cSSatish Balay 
2252a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2253a30f8f8cSSatish Balay     nz     = procsnz[0];
22541302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2255a30f8f8cSSatish Balay     mycols = ibuf;
2256a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2257a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2259a30f8f8cSSatish Balay 
2260a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2261a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2262a30f8f8cSSatish Balay       nz   = procsnz[i];
2263a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2264a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2265a30f8f8cSSatish Balay     }
2266a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2267a30f8f8cSSatish Balay     if (size != 1) {
2268a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2269a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2270a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2271a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2272a30f8f8cSSatish Balay     }
2273a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22740222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2275a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2276a30f8f8cSSatish Balay     nz = 0;
2277a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2278a30f8f8cSSatish Balay       nz += locrowlens[i];
2279a30f8f8cSSatish Balay     }
22801302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2281a30f8f8cSSatish Balay     mycols = ibuf;
2282a30f8f8cSSatish Balay     /* receive message of column indices*/
2283a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2284a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
228529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2286a30f8f8cSSatish Balay   }
2287a30f8f8cSSatish Balay 
2288a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
228974ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
229074ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
229174ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229274ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229374ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
229474ed9c26SBarry Smith   rowcount = 0;
229574ed9c26SBarry Smith   nzcount  = 0;
2296a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2297a30f8f8cSSatish Balay     dcount  = 0;
2298a30f8f8cSSatish Balay     odcount = 0;
2299a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2300a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2301a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
23020222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2303a30f8f8cSSatish Balay         if (!mask[tmp]) {
2304a30f8f8cSSatish Balay           mask[tmp] = 1;
23050222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
23060222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2307a30f8f8cSSatish Balay         }
2308a30f8f8cSSatish Balay       }
2309a30f8f8cSSatish Balay       rowcount++;
2310a30f8f8cSSatish Balay     }
2311a30f8f8cSSatish Balay 
23120222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
23130222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2316a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2317a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2318a30f8f8cSSatish Balay   }
2319a30f8f8cSSatish Balay 
2320a30f8f8cSSatish Balay   /* create our matrix */
2321f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2322f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
232322191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
232417fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
232522191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2326a30f8f8cSSatish Balay 
2327a30f8f8cSSatish Balay   if (!rank) {
232887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2329a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2330a30f8f8cSSatish Balay     nz = procsnz[0];
2331a30f8f8cSSatish Balay     vals = buf;
2332a30f8f8cSSatish Balay     mycols = ibuf;
2333a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2334a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2335a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2336a30f8f8cSSatish Balay 
2337a30f8f8cSSatish Balay     /* insert into matrix */
2338a30f8f8cSSatish Balay     jj      = rstart*bs;
2339a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23407e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2341a30f8f8cSSatish Balay       mycols += locrowlens[i];
2342a30f8f8cSSatish Balay       vals   += locrowlens[i];
2343a30f8f8cSSatish Balay       jj++;
2344a30f8f8cSSatish Balay     }
23457e06b45fSHong Zhang 
2346a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2347a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2348a30f8f8cSSatish Balay       nz   = procsnz[i];
2349a30f8f8cSSatish Balay       vals = buf;
2350a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23517adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2352a30f8f8cSSatish Balay     }
2353a30f8f8cSSatish Balay     /* the last proc */
2354a30f8f8cSSatish Balay     if (size != 1){
2355a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2356a30f8f8cSSatish Balay       vals = buf;
2357a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2358a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23597adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2360a30f8f8cSSatish Balay     }
2361a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23627e06b45fSHong Zhang 
2363a30f8f8cSSatish Balay   } else {
2364a30f8f8cSSatish Balay     /* receive numeric values */
236587828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay 
2367a30f8f8cSSatish Balay     /* receive message of values*/
2368a30f8f8cSSatish Balay     vals   = buf;
2369a30f8f8cSSatish Balay     mycols = ibuf;
23707adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2371a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
237229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2373a30f8f8cSSatish Balay 
2374a30f8f8cSSatish Balay     /* insert into matrix */
2375a30f8f8cSSatish Balay     jj      = rstart*bs;
2376a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2377a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2378a30f8f8cSSatish Balay       mycols += locrowlens[i];
2379a30f8f8cSSatish Balay       vals   += locrowlens[i];
2380a30f8f8cSSatish Balay       jj++;
2381a30f8f8cSSatish Balay     }
2382a30f8f8cSSatish Balay   }
23837e06b45fSHong Zhang 
2384a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2385a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2386a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
238774ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
238874ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
238974ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2390a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2391a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239222191285SKris Buschelman   *newmat = A;
2393a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2394a30f8f8cSSatish Balay }
2395a30f8f8cSSatish Balay 
23964a2ae208SSatish Balay #undef __FUNCT__
23974a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2398dcf5cc72SBarry Smith /*XXXXX@
2399a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2400a30f8f8cSSatish Balay 
2401a30f8f8cSSatish Balay    Input Parameters:
2402a30f8f8cSSatish Balay .  mat  - the matrix
2403a30f8f8cSSatish Balay .  fact - factor
2404a30f8f8cSSatish Balay 
2405a30f8f8cSSatish Balay    Collective on Mat
2406a30f8f8cSSatish Balay 
2407a30f8f8cSSatish Balay    Level: advanced
2408a30f8f8cSSatish Balay 
2409a30f8f8cSSatish Balay   Notes:
2410a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2413a30f8f8cSSatish Balay 
2414a30f8f8cSSatish Balay .seealso: MatSetOption()
2415dcf5cc72SBarry Smith @XXXXX*/
2416dcf5cc72SBarry Smith 
241724d5174aSHong Zhang 
24184a2ae208SSatish Balay #undef __FUNCT__
2419985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2420985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
242124d5174aSHong Zhang {
242224d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2423f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2424ca54ac64SHong Zhang   PetscReal      atmp;
242587828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2426dfbe8321SBarry Smith   PetscErrorCode ierr;
24271302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24281302d50aSBarry Smith   PetscMPIInt    rank,size;
24291302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
243087828ca2SBarry Smith   PetscScalar    *va;
24318a1c53f2SBarry Smith   MatScalar      *ba;
2432f4c0e9e4SHong Zhang   MPI_Status     stat;
243324d5174aSHong Zhang 
243424d5174aSHong Zhang   PetscFunctionBegin;
2435985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2436985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24371ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2438f4c0e9e4SHong Zhang 
24397adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24407adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2441f4c0e9e4SHong Zhang 
2442d0f46423SBarry Smith   bs   = A->rmap->bs;
2443f4c0e9e4SHong Zhang   mbs  = a->mbs;
2444f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2445f4c0e9e4SHong Zhang   ba   = b->a;
2446f4c0e9e4SHong Zhang   bi   = b->i;
2447f4c0e9e4SHong Zhang   bj   = b->j;
2448f4c0e9e4SHong Zhang 
2449f4c0e9e4SHong Zhang   /* find ownerships */
2450d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2451f4c0e9e4SHong Zhang 
2452f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
245382502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2454ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2455f4c0e9e4SHong Zhang 
2456f4c0e9e4SHong Zhang   /* row_max for B */
2457b8475685SHong Zhang   if (rank != size-1){
2458f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2459f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2460f4c0e9e4SHong Zhang       brow  = bs*i;
2461f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2462f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2463f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2464ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
246504d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2466f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2467f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2468ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2469ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2470f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2471f4c0e9e4SHong Zhang           }
2472f4c0e9e4SHong Zhang         }
2473f4c0e9e4SHong Zhang         bj++;
2474f4c0e9e4SHong Zhang       }
2475f4c0e9e4SHong Zhang     }
2476f4c0e9e4SHong Zhang 
2477f4c0e9e4SHong Zhang     /* send values to its owners */
2478f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2479f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2480ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24817adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2482ca54ac64SHong Zhang     }
2483f4c0e9e4SHong Zhang   }
2484f4c0e9e4SHong Zhang 
2485f4c0e9e4SHong Zhang   /* receive values */
2486ca54ac64SHong Zhang   if (rank){
2487f4c0e9e4SHong Zhang     rvalues = work;
2488ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2489f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24907adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2491f4c0e9e4SHong Zhang       /* process values */
2492f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2493ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2494f4c0e9e4SHong Zhang       }
2495f4c0e9e4SHong Zhang     }
2496ca54ac64SHong Zhang   }
2497f4c0e9e4SHong Zhang 
24981ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2499ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
250024d5174aSHong Zhang   PetscFunctionReturn(0);
250124d5174aSHong Zhang }
25022798e883SHong Zhang 
25032798e883SHong Zhang #undef __FUNCT__
250441f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
250541f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
25062798e883SHong Zhang {
25072798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2508dfbe8321SBarry Smith   PetscErrorCode ierr;
2509d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2510fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2511ffe4fb16SHong Zhang   Vec            bb1;
2512ffe4fb16SHong Zhang 
2513ffe4fb16SHong Zhang   PetscFunctionBegin;
251477431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2515b75cf396SBarry Smith   if (bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2516ffe4fb16SHong Zhang 
2517a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
251841f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2519a2b30743SBarry Smith     PetscFunctionReturn(0);
2520a2b30743SBarry Smith   }
2521a2b30743SBarry Smith 
2522ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2523ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
252441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2525ffe4fb16SHong Zhang       its--;
2526ffe4fb16SHong Zhang     }
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2529ffe4fb16SHong Zhang     while (its--){
2530ffe4fb16SHong Zhang 
2531ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2532ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang 
2534ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25351ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25361ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2537ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25381ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang 
2540efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2541ffe4fb16SHong Zhang 
2542ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25431ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25441ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2545ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25461ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2547ffe4fb16SHong Zhang 
2548ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2549fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2550ffe4fb16SHong Zhang 
2551ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25521ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25531ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2554ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2555ffe4fb16SHong Zhang 
2556ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2557ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2558ffe4fb16SHong Zhang 
2559ffe4fb16SHong Zhang       /* local diagonal sweep */
256041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2561ffe4fb16SHong Zhang     }
2562ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2563fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2565fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
256641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2567fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2568fa22f6d0SBarry Smith     Vec               xx1;
2569fa22f6d0SBarry Smith     PetscTruth        hasop;
257020f1ed55SBarry Smith     const PetscScalar *diag;
2571887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
257220f1ed55SBarry Smith     PetscInt          i,n;
2573fa22f6d0SBarry Smith 
2574fa22f6d0SBarry Smith     if (!mat->xx1) {
2575fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2576fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2577fa22f6d0SBarry Smith     }
2578fa22f6d0SBarry Smith     xx1 = mat->xx1;
2579fa22f6d0SBarry Smith     bb1 = mat->bb1;
2580fa22f6d0SBarry Smith 
258141f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2582fa22f6d0SBarry Smith 
2583fa22f6d0SBarry Smith     if (!mat->diag) {
2584effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2585fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2586fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2587fa22f6d0SBarry Smith     }
2588fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2589fa22f6d0SBarry Smith 
2590fa22f6d0SBarry Smith     if (hasop) {
2591fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2592887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259320f1ed55SBarry Smith     } else {
259420f1ed55SBarry Smith       /*
259520f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
259620f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2597887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
259820f1ed55SBarry Smith       */
259920f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
260020f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
260120f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
260220f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
260320f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2604887ee2caSBarry Smith       if (omega == 1.0) {
260520f1ed55SBarry Smith 	for (i=0; i<n; i++) {
260620f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
260720f1ed55SBarry Smith 	}
260820f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2609887ee2caSBarry Smith       } else {
2610887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2611887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2612887ee2caSBarry Smith 	}
2613887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2614887ee2caSBarry Smith       }
261520f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
261620f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
261720f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
261820f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
261920f1ed55SBarry Smith     }
2620fa22f6d0SBarry Smith 
2621fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2622fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2623fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2624fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2625fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2626fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2627fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2628fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2629fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2630fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2631effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2632fa22f6d0SBarry Smith 
2633fa22f6d0SBarry Smith     /* local sweep */
263441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2635fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2636ffe4fb16SHong Zhang   } else {
2637ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2638ffe4fb16SHong Zhang   }
2639ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2640ffe4fb16SHong Zhang }
2641ffe4fb16SHong Zhang 
2642ffe4fb16SHong Zhang #undef __FUNCT__
264341f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
264441f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2645ffe4fb16SHong Zhang {
2646ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2647dfbe8321SBarry Smith   PetscErrorCode ierr;
26482798e883SHong Zhang   Vec            lvec1,bb1;
26492798e883SHong Zhang 
26502798e883SHong Zhang   PetscFunctionBegin;
265177431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2652b75cf396SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26532798e883SHong Zhang 
2654c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26552798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
265641f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26572798e883SHong Zhang       its--;
26582798e883SHong Zhang     }
26592798e883SHong Zhang 
26602798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26612798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26622798e883SHong Zhang     while (its--){
2663ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26642798e883SHong Zhang 
26652798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26662798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2667efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26682798e883SHong Zhang 
2669ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26702798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2671ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26722798e883SHong Zhang 
26732798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2674efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26752798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26762798e883SHong Zhang 
2677ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26782798e883SHong Zhang 
2679c14dc6b6SHong Zhang       /* diagonal sweep */
268041f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26812798e883SHong Zhang     }
26822798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26832798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2684c14dc6b6SHong Zhang   } else {
2685c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2686c14dc6b6SHong Zhang   }
26872798e883SHong Zhang   PetscFunctionReturn(0);
26882798e883SHong Zhang }
26892798e883SHong Zhang 
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