1a30f8f8cSSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 4c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 6a30f8f8cSSatish Balay 709573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat); 809573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat); 9ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPISBAIJ(Mat); 1009573ac7SBarry Smith extern PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt); 1109573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1209573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []); 1309573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 1409573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1509573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1609573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1709573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 1809573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 1909573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*,Vec,Vec); 2009573ac7SBarry Smith extern PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]); 2109573ac7SBarry Smith extern PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 22a30f8f8cSSatish Balay 234a2ae208SSatish Balay #undef __FUNCT__ 244a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ" 257087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 26a30f8f8cSSatish Balay { 27f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 28dfbe8321SBarry Smith PetscErrorCode ierr; 29a30f8f8cSSatish Balay 30a30f8f8cSSatish Balay PetscFunctionBegin; 31a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 32a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 33a30f8f8cSSatish Balay PetscFunctionReturn(0); 34a30f8f8cSSatish Balay } 35a30f8f8cSSatish Balay 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ" 387087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 39a30f8f8cSSatish Balay { 40f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ*)mat->data; 41dfbe8321SBarry Smith PetscErrorCode ierr; 42a30f8f8cSSatish Balay 43a30f8f8cSSatish Balay PetscFunctionBegin; 44a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 45a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 46a30f8f8cSSatish Balay PetscFunctionReturn(0); 47a30f8f8cSSatish Balay } 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 50a30f8f8cSSatish Balay { \ 51a30f8f8cSSatish Balay \ 52a30f8f8cSSatish Balay brow = row/bs; \ 53a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 54a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 55a30f8f8cSSatish Balay bcol = col/bs; \ 56a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 57a30f8f8cSSatish Balay low = 0; high = nrow; \ 58a30f8f8cSSatish Balay while (high-low > 3) { \ 59a30f8f8cSSatish Balay t = (low+high)/2; \ 60a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 61a30f8f8cSSatish Balay else low = t; \ 62a30f8f8cSSatish Balay } \ 63a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 64a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 65a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 66a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 67a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 68a30f8f8cSSatish Balay else *bap = value; \ 69a30f8f8cSSatish Balay goto a_noinsert; \ 70a30f8f8cSSatish Balay } \ 71a30f8f8cSSatish Balay } \ 72a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 73e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 74fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 75a30f8f8cSSatish Balay N = nrow++ - 1; \ 76a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 77a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 78a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 79a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 80a30f8f8cSSatish Balay } \ 81a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 82a30f8f8cSSatish Balay rp[_i] = bcol; \ 83a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 84a30f8f8cSSatish Balay a_noinsert:; \ 85a30f8f8cSSatish Balay ailen[brow] = nrow; \ 86a30f8f8cSSatish Balay } 87e5e170daSBarry Smith 88a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 89a30f8f8cSSatish Balay { \ 90a30f8f8cSSatish Balay brow = row/bs; \ 91a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 92a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 93a30f8f8cSSatish Balay bcol = col/bs; \ 94a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 95a30f8f8cSSatish Balay low = 0; high = nrow; \ 96a30f8f8cSSatish Balay while (high-low > 3) { \ 97a30f8f8cSSatish Balay t = (low+high)/2; \ 98a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 99a30f8f8cSSatish Balay else low = t; \ 100a30f8f8cSSatish Balay } \ 101a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 102a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 103a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 104a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 105a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 106a30f8f8cSSatish Balay else *bap = value; \ 107a30f8f8cSSatish Balay goto b_noinsert; \ 108a30f8f8cSSatish Balay } \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 111e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 112fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 113a30f8f8cSSatish Balay N = nrow++ - 1; \ 114a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 115a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 116a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 117a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 118a30f8f8cSSatish Balay } \ 119a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 120a30f8f8cSSatish Balay rp[_i] = bcol; \ 121a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 122a30f8f8cSSatish Balay b_noinsert:; \ 123a30f8f8cSSatish Balay bilen[brow] = nrow; \ 124a30f8f8cSSatish Balay } 125a30f8f8cSSatish Balay 126a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 127a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 128a30f8f8cSSatish Balay */ 1294a2ae208SSatish Balay #undef __FUNCT__ 130dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ" 131dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 132a30f8f8cSSatish Balay { 133a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 134a30f8f8cSSatish Balay MatScalar value; 135ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 136dfbe8321SBarry Smith PetscErrorCode ierr; 1371302d50aSBarry Smith PetscInt i,j,row,col; 138d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 139d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 140d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 141a30f8f8cSSatish Balay 142a30f8f8cSSatish Balay /* Some Variables required in the macro */ 143a30f8f8cSSatish Balay Mat A = baij->A; 144a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 1451302d50aSBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 146a30f8f8cSSatish Balay MatScalar *aa =a->a; 147a30f8f8cSSatish Balay 148a30f8f8cSSatish Balay Mat B = baij->B; 149a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 1501302d50aSBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 151a30f8f8cSSatish Balay MatScalar *ba =b->a; 152a30f8f8cSSatish Balay 1531302d50aSBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 1541302d50aSBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 155a30f8f8cSSatish Balay MatScalar *ap,*bap; 156a30f8f8cSSatish Balay 157a30f8f8cSSatish Balay /* for stash */ 1580298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 1590298fd71SBarry Smith MatScalar *v_loc = NULL; 160a30f8f8cSSatish Balay 161a30f8f8cSSatish Balay PetscFunctionBegin; 16271fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 163a30f8f8cSSatish Balay if (!baij->donotstash) { 16459ffdab8SBarry Smith if (n > baij->n_loc) { 16559ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 16659ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 16759ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr); 16859ffdab8SBarry Smith ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr); 16926fbe8dcSKarl Rupp 17059ffdab8SBarry Smith baij->n_loc = n; 17159ffdab8SBarry Smith } 17259ffdab8SBarry Smith in_loc = baij->in_loc; 17359ffdab8SBarry Smith v_loc = baij->v_loc; 174a30f8f8cSSatish Balay } 175a30f8f8cSSatish Balay 176a30f8f8cSSatish Balay for (i=0; i<m; i++) { 177a30f8f8cSSatish Balay if (im[i] < 0) continue; 1782515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 179e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 180a30f8f8cSSatish Balay #endif 181a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 182a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 183a30f8f8cSSatish Balay for (j=0; j<n; j++) { 18401b2bd88SHong Zhang if (im[i]/bs > in[j]/bs) { 18501b2bd88SHong Zhang if (a->ignore_ltriangular) { 18601b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 18726fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 18801b2bd88SHong Zhang } 189a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 190a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 191a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 192a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 193db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 194db4deed7SKarl Rupp else value = v[i+j*m]; 195a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 196a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 197a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 1982515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 199cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 200a30f8f8cSSatish Balay #endif 201a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 202a30f8f8cSSatish Balay if (mat->was_assembled) { 203a30f8f8cSSatish Balay if (!baij->colmap) { 204ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 205a30f8f8cSSatish Balay } 206a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 207a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 20871730473SSatish Balay col = col - 1; 209a30f8f8cSSatish Balay #else 21071730473SSatish Balay col = baij->colmap[in[j]/bs] - 1; 211a30f8f8cSSatish Balay #endif 212a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 213ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 214a30f8f8cSSatish Balay col = in[j]; 215a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 216a30f8f8cSSatish Balay B = baij->B; 217a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 218a30f8f8cSSatish Balay bimax= b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 219a30f8f8cSSatish Balay ba = b->a; 22071730473SSatish Balay } else col += in[j]%bs; 221a30f8f8cSSatish Balay } else col = in[j]; 222db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 223db4deed7SKarl Rupp else value = v[i+j*m]; 224a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 225a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 226a30f8f8cSSatish Balay } 227a30f8f8cSSatish Balay } 228a30f8f8cSSatish Balay } else { /* off processor entry */ 2294cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 230a30f8f8cSSatish Balay if (!baij->donotstash) { 2315080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 232a30f8f8cSSatish Balay n_loc = 0; 233a30f8f8cSSatish Balay for (j=0; j<n; j++) { 234f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 235a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 236a30f8f8cSSatish Balay if (roworiented) { 237a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 238a30f8f8cSSatish Balay } else { 239a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 240a30f8f8cSSatish Balay } 241a30f8f8cSSatish Balay n_loc++; 242a30f8f8cSSatish Balay } 243b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr); 244a30f8f8cSSatish Balay } 245a30f8f8cSSatish Balay } 246a30f8f8cSSatish Balay } 247a30f8f8cSSatish Balay PetscFunctionReturn(0); 248a30f8f8cSSatish Balay } 249a30f8f8cSSatish Balay 2504a2ae208SSatish Balay #undef __FUNCT__ 251dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ" 252dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 253a30f8f8cSSatish Balay { 2540880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 255f15d580aSBarry Smith const MatScalar *value; 256f15d580aSBarry Smith MatScalar *barray =baij->barray; 257ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular; 258dfbe8321SBarry Smith PetscErrorCode ierr; 259899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 260899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->rstartbs,stepval; 261d0f46423SBarry Smith PetscInt cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2; 2620880e062SHong Zhang 263a30f8f8cSSatish Balay PetscFunctionBegin; 2640880e062SHong Zhang if (!barray) { 2650880e062SHong Zhang ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 2660880e062SHong Zhang baij->barray = barray; 2670880e062SHong Zhang } 2680880e062SHong Zhang 2690880e062SHong Zhang if (roworiented) { 2700880e062SHong Zhang stepval = (n-1)*bs; 2710880e062SHong Zhang } else { 2720880e062SHong Zhang stepval = (m-1)*bs; 2730880e062SHong Zhang } 2740880e062SHong Zhang for (i=0; i<m; i++) { 2750880e062SHong Zhang if (im[i] < 0) continue; 2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 277e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 2780880e062SHong Zhang #endif 2790880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 2800880e062SHong Zhang row = im[i] - rstart; 2810880e062SHong Zhang for (j=0; j<n; j++) { 282f3f98c53SJed Brown if (im[i] > in[j]) { 283f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 284e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 285f3f98c53SJed Brown } 2860880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 2870880e062SHong Zhang if ((roworiented) && (n == 1)) { 288f15d580aSBarry Smith barray = (MatScalar*) v + i*bs2; 2890880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 290f15d580aSBarry Smith barray = (MatScalar*) v + j*bs2; 2910880e062SHong Zhang } else { /* Here a copy is required */ 2920880e062SHong Zhang if (roworiented) { 2930880e062SHong Zhang value = v + i*(stepval+bs)*bs + j*bs; 2940880e062SHong Zhang } else { 2950880e062SHong Zhang value = v + j*(stepval+bs)*bs + i*bs; 2960880e062SHong Zhang } 2970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 2980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 2990880e062SHong Zhang *barray++ = *value++; 3000880e062SHong Zhang } 3010880e062SHong Zhang } 3020880e062SHong Zhang barray -=bs2; 3030880e062SHong Zhang } 3040880e062SHong Zhang 3050880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 3060880e062SHong Zhang col = in[j] - cstart; 3070880e062SHong Zhang ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 30826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3092515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 310cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 3110880e062SHong Zhang #endif 3120880e062SHong Zhang else { 3130880e062SHong Zhang if (mat->was_assembled) { 3140880e062SHong Zhang if (!baij->colmap) { 315ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 3160880e062SHong Zhang } 3170880e062SHong Zhang 3182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 3190880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3201302d50aSBarry Smith { PetscInt data; 3210880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 322e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3230880e062SHong Zhang } 3240880e062SHong Zhang #else 325e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 3260880e062SHong Zhang #endif 3270880e062SHong Zhang #endif 3280880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 3290880e062SHong Zhang ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 3300880e062SHong Zhang col = (col - 1)/bs; 3310880e062SHong Zhang #else 3320880e062SHong Zhang col = (baij->colmap[in[j]] - 1)/bs; 3330880e062SHong Zhang #endif 3340880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 335ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 3360880e062SHong Zhang col = in[j]; 3370880e062SHong Zhang } 33826fbe8dcSKarl Rupp } else col = in[j]; 339e249d750SSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 3400880e062SHong Zhang } 3410880e062SHong Zhang } 3420880e062SHong Zhang } else { 3434cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 3440880e062SHong Zhang if (!baij->donotstash) { 3450880e062SHong Zhang if (roworiented) { 3460880e062SHong Zhang ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3470880e062SHong Zhang } else { 3480880e062SHong Zhang ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 3490880e062SHong Zhang } 3500880e062SHong Zhang } 3510880e062SHong Zhang } 3520880e062SHong Zhang } 3530880e062SHong Zhang PetscFunctionReturn(0); 354a30f8f8cSSatish Balay } 355a30f8f8cSSatish Balay 3564a2ae208SSatish Balay #undef __FUNCT__ 3574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ" 3581302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 359a30f8f8cSSatish Balay { 360f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 3616849ba73SBarry Smith PetscErrorCode ierr; 362d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 363d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 364a30f8f8cSSatish Balay 365a30f8f8cSSatish Balay PetscFunctionBegin; 366a30f8f8cSSatish Balay for (i=0; i<m; i++) { 367e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */ 368e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 369a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 370a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 371a30f8f8cSSatish Balay for (j=0; j<n; j++) { 372e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */ 373e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 374a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 375a30f8f8cSSatish Balay col = idxn[j] - bscstart; 376c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 377a30f8f8cSSatish Balay } else { 378a30f8f8cSSatish Balay if (!baij->colmap) { 379ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 382a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 383a30f8f8cSSatish Balay data--; 384a30f8f8cSSatish Balay #else 385a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 386a30f8f8cSSatish Balay #endif 387a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 388a30f8f8cSSatish Balay else { 389a30f8f8cSSatish Balay col = data + idxn[j]%bs; 390e249d750SSatish Balay ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 391a30f8f8cSSatish Balay } 392a30f8f8cSSatish Balay } 393a30f8f8cSSatish Balay } 394f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 395a30f8f8cSSatish Balay } 396a30f8f8cSSatish Balay PetscFunctionReturn(0); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay 3994a2ae208SSatish Balay #undef __FUNCT__ 4004a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ" 401dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 402a30f8f8cSSatish Balay { 403a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 404dfbe8321SBarry Smith PetscErrorCode ierr; 405a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 406a30f8f8cSSatish Balay 407a30f8f8cSSatish Balay PetscFunctionBegin; 408a30f8f8cSSatish Balay if (baij->size == 1) { 409a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 410a30f8f8cSSatish Balay } else { 411a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 412f6275e2eSBarry Smith ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr); 413a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 414a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 415a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 416a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 417ce94432eSBarry Smith ierr = MPI_Allreduce(lnorm2,sum,2,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4188f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2*sum[1]); 419a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 4200b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 4210b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data; 4220b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat=(Mat_SeqBAIJ*)baij->B->data; 4230b8dc8d2SHong Zhang PetscReal *rsum,*rsum2,vabs; 424899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,rstart=baij->rstartbs,nz; 425d0f46423SBarry Smith PetscInt brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs; 4260b8dc8d2SHong Zhang MatScalar *v; 4270b8dc8d2SHong Zhang 42874ed9c26SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr); 429d0f46423SBarry Smith ierr = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 4300b8dc8d2SHong Zhang /* Amat */ 4310b8dc8d2SHong Zhang v = amat->a; jj = amat->j; 4320b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4330b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4340b8dc8d2SHong Zhang nz = amat->i[brow+1] - amat->i[brow]; 4350b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4360b8dc8d2SHong Zhang gcol = bs*(rstart + *jj); jj++; 4370b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4380b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4390b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4400b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4410b8dc8d2SHong Zhang /* non-diagonal block */ 4420b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs; 4430b8dc8d2SHong Zhang } 4440b8dc8d2SHong Zhang } 4450b8dc8d2SHong Zhang } 4460b8dc8d2SHong Zhang } 4470b8dc8d2SHong Zhang /* Bmat */ 4480b8dc8d2SHong Zhang v = bmat->a; jj = bmat->j; 4490b8dc8d2SHong Zhang for (brow=0; brow<mbs; brow++) { 4500b8dc8d2SHong Zhang grow = bs*(rstart + brow); 4510b8dc8d2SHong Zhang nz = bmat->i[brow+1] - bmat->i[brow]; 4520b8dc8d2SHong Zhang for (bcol=0; bcol<nz; bcol++) { 4530b8dc8d2SHong Zhang gcol = bs*garray[*jj]; jj++; 4540b8dc8d2SHong Zhang for (col=0; col<bs; col++) { 4550b8dc8d2SHong Zhang for (row=0; row<bs; row++) { 4560b8dc8d2SHong Zhang vabs = PetscAbsScalar(*v); v++; 4570b8dc8d2SHong Zhang rsum[gcol+col] += vabs; 4580b8dc8d2SHong Zhang rsum[grow+row] += vabs; 4590b8dc8d2SHong Zhang } 4600b8dc8d2SHong Zhang } 4610b8dc8d2SHong Zhang } 4620b8dc8d2SHong Zhang } 463ce94432eSBarry Smith ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 4640b8dc8d2SHong Zhang *norm = 0.0; 465d0f46423SBarry Smith for (col=0; col<mat->cmap->N; col++) { 4660b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 4670b8dc8d2SHong Zhang } 46874ed9c26SBarry Smith ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr); 469f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet"); 470a30f8f8cSSatish Balay } 471a30f8f8cSSatish Balay PetscFunctionReturn(0); 472a30f8f8cSSatish Balay } 473a30f8f8cSSatish Balay 4744a2ae208SSatish Balay #undef __FUNCT__ 4754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ" 476dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 477a30f8f8cSSatish Balay { 478a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 479dfbe8321SBarry Smith PetscErrorCode ierr; 4801302d50aSBarry Smith PetscInt nstash,reallocs; 481a30f8f8cSSatish Balay InsertMode addv; 482a30f8f8cSSatish Balay 483a30f8f8cSSatish Balay PetscFunctionBegin; 48426fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 485a30f8f8cSSatish Balay 486a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 487ce94432eSBarry Smith ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 488ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 489a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 490a30f8f8cSSatish Balay 491d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 4921e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 493a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4941e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 495a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 4961e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 497a30f8f8cSSatish Balay PetscFunctionReturn(0); 498a30f8f8cSSatish Balay } 499a30f8f8cSSatish Balay 5004a2ae208SSatish Balay #undef __FUNCT__ 5014a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ" 502dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 503a30f8f8cSSatish Balay { 504a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 505a30f8f8cSSatish Balay Mat_SeqSBAIJ *a =(Mat_SeqSBAIJ*)baij->A->data; 5066849ba73SBarry Smith PetscErrorCode ierr; 50713f74950SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 508e44c0bd4SBarry Smith PetscInt *row,*col; 509ace3abfcSBarry Smith PetscBool other_disassembled; 51013f74950SBarry Smith PetscMPIInt n; 511ace3abfcSBarry Smith PetscBool r1,r2,r3; 512a30f8f8cSSatish Balay MatScalar *val; 513a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 514a30f8f8cSSatish Balay 51591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 516a30f8f8cSSatish Balay PetscFunctionBegin; 5174cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 518a30f8f8cSSatish Balay while (1) { 519a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 520a30f8f8cSSatish Balay if (!flg) break; 521a30f8f8cSSatish Balay 522a30f8f8cSSatish Balay for (i=0; i<n;) { 523a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 52426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 52526fbe8dcSKarl Rupp if (row[j] != rstart) break; 52626fbe8dcSKarl Rupp } 527a30f8f8cSSatish Balay if (j < n) ncols = j-i; 528a30f8f8cSSatish Balay else ncols = n-i; 529a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 530dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 531a30f8f8cSSatish Balay i = j; 532a30f8f8cSSatish Balay } 533a30f8f8cSSatish Balay } 534a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 535a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 536a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 537a30f8f8cSSatish Balay restore the original flags */ 538a30f8f8cSSatish Balay r1 = baij->roworiented; 539a30f8f8cSSatish Balay r2 = a->roworiented; 54091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 54126fbe8dcSKarl Rupp 542a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 543a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 54426fbe8dcSKarl Rupp 54591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 546a30f8f8cSSatish Balay while (1) { 547a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 548a30f8f8cSSatish Balay if (!flg) break; 549a30f8f8cSSatish Balay 550a30f8f8cSSatish Balay for (i=0; i<n;) { 551a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 55226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 55326fbe8dcSKarl Rupp if (row[j] != rstart) break; 55426fbe8dcSKarl Rupp } 555a30f8f8cSSatish Balay if (j < n) ncols = j-i; 556a30f8f8cSSatish Balay else ncols = n-i; 557dd6ea824SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 558a30f8f8cSSatish Balay i = j; 559a30f8f8cSSatish Balay } 560a30f8f8cSSatish Balay } 561a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 56226fbe8dcSKarl Rupp 563a30f8f8cSSatish Balay baij->roworiented = r1; 564a30f8f8cSSatish Balay a->roworiented = r2; 56526fbe8dcSKarl Rupp 56691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworinted */ 567a30f8f8cSSatish Balay } 568a30f8f8cSSatish Balay 569a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 570a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 571a30f8f8cSSatish Balay 572a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 573a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 574a30f8f8cSSatish Balay /* 575a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 576a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 577a30f8f8cSSatish Balay */ 578a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 579ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 580a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 581ab9863d7SBarry Smith ierr = MatDisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay } 584a30f8f8cSSatish Balay 585a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 58640781036SHong Zhang ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */ 587a30f8f8cSSatish Balay } 588cd6b891eSBarry Smith ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE);CHKERRQ(ierr); 589a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 590a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 591a30f8f8cSSatish Balay 59274ed9c26SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 59326fbe8dcSKarl Rupp 594a30f8f8cSSatish Balay baij->rowvalues = 0; 595a30f8f8cSSatish Balay PetscFunctionReturn(0); 596a30f8f8cSSatish Balay } 597a30f8f8cSSatish Balay 598dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 5999804daf3SBarry Smith #include <petscdraw.h> 6004a2ae208SSatish Balay #undef __FUNCT__ 6014a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket" 6026849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 603a30f8f8cSSatish Balay { 604a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 605dfbe8321SBarry Smith PetscErrorCode ierr; 606d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 6071302d50aSBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 608ace3abfcSBarry Smith PetscBool iascii,isdraw; 609b0a32e0cSBarry Smith PetscViewer sviewer; 610f3ef73ceSBarry Smith PetscViewerFormat format; 611a30f8f8cSSatish Balay 612a30f8f8cSSatish Balay PetscFunctionBegin; 613251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 614251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61532077d6dSBarry Smith if (iascii) { 616b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 617456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 618a30f8f8cSSatish Balay MatInfo info; 619ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 620a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6217b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6227b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 623a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 624e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 625a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 626e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 627b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6287b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 62907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 630a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 631a30f8f8cSSatish Balay PetscFunctionReturn(0); 632fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 63377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 634a30f8f8cSSatish Balay PetscFunctionReturn(0); 635c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 636c1490034SHong Zhang PetscFunctionReturn(0); 637a30f8f8cSSatish Balay } 638a30f8f8cSSatish Balay } 639a30f8f8cSSatish Balay 640a30f8f8cSSatish Balay if (isdraw) { 641b0a32e0cSBarry Smith PetscDraw draw; 642ace3abfcSBarry Smith PetscBool isnull; 643b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 644b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 645a30f8f8cSSatish Balay } 646a30f8f8cSSatish Balay 647a30f8f8cSSatish Balay if (size == 1) { 6487adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 649a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 650a30f8f8cSSatish Balay } else { 651a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 652a30f8f8cSSatish Balay Mat A; 65365d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 65465d70643SHong Zhang Mat_SeqBAIJ *Bloc; 655d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 656a30f8f8cSSatish Balay MatScalar *a; 657a30f8f8cSSatish Balay 658f204ca49SKris Buschelman /* Should this be the same type as mat? */ 659ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 660a30f8f8cSSatish Balay if (!rank) { 661f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 662a30f8f8cSSatish Balay } else { 663f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 664a30f8f8cSSatish Balay } 665f204ca49SKris Buschelman ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr); 6660298fd71SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 6672b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 6683bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay /* copy over the A part */ 67165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 672a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 6731302d50aSBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 674a30f8f8cSSatish Balay 675a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 676e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 67726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 678a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 679e9f7bc9eSHong Zhang col = (baij->cstartbs+aj[j])*bs; 680a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 681dd6ea824SBarry Smith ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 68226fbe8dcSKarl Rupp col++; 68326fbe8dcSKarl Rupp a += bs; 684a30f8f8cSSatish Balay } 685a30f8f8cSSatish Balay } 686a30f8f8cSSatish Balay } 687a30f8f8cSSatish Balay /* copy over the B part */ 68865d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 68965d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 690a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 691e9f7bc9eSHong Zhang 692e9f7bc9eSHong Zhang rvals[0] = bs*(baij->rstartbs + i); 69326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 694a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 695a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 696a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 697799bb49cSHong Zhang ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 69826fbe8dcSKarl Rupp col++; 69926fbe8dcSKarl Rupp a += bs; 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay } 702a30f8f8cSSatish Balay } 703a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 704a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 705a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 706a30f8f8cSSatish Balay /* 707a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 708b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 709a30f8f8cSSatish Balay */ 710b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 71165d70643SHong Zhang if (!rank) { 7127adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7137566de4bSShri Abhyankar /* Set the type name to MATMPISBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqSBAIJ_ASCII()*/ 7147566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPISBAIJ*)(A->data))->A)->type_name,MATMPISBAIJ); 715a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 716a30f8f8cSSatish Balay } 717b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 7186bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 719a30f8f8cSSatish Balay } 720a30f8f8cSSatish Balay PetscFunctionReturn(0); 721a30f8f8cSSatish Balay } 722a30f8f8cSSatish Balay 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ" 725dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer) 726a30f8f8cSSatish Balay { 727dfbe8321SBarry Smith PetscErrorCode ierr; 728ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 729a30f8f8cSSatish Balay 730a30f8f8cSSatish Balay PetscFunctionBegin; 731251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 732251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 733251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 734251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 73532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 736a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 737a30f8f8cSSatish Balay } 738a30f8f8cSSatish Balay PetscFunctionReturn(0); 739a30f8f8cSSatish Balay } 740a30f8f8cSSatish Balay 7414a2ae208SSatish Balay #undef __FUNCT__ 7424a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ" 743dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 744a30f8f8cSSatish Balay { 745a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 746dfbe8321SBarry Smith PetscErrorCode ierr; 747a30f8f8cSSatish Balay 748a30f8f8cSSatish Balay PetscFunctionBegin; 749a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 750d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 751a30f8f8cSSatish Balay #endif 752a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 753a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 7546bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 7556bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 756a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 7576bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 758a30f8f8cSSatish Balay #else 75905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 760a30f8f8cSSatish Balay #endif 76105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 7626bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 7636bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 7646bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0);CHKERRQ(ierr); 7656bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec0b);CHKERRQ(ierr); 7666bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1);CHKERRQ(ierr); 7676bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1a);CHKERRQ(ierr); 7686bf464f9SBarry Smith ierr = VecDestroy(&baij->slvec1b);CHKERRQ(ierr); 7696bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->sMvctx);CHKERRQ(ierr); 7705755ff91SHong Zhang ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 77105b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 77205b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 7736bf464f9SBarry Smith ierr = VecDestroy(&baij->diag);CHKERRQ(ierr); 7746bf464f9SBarry Smith ierr = VecDestroy(&baij->bb1);CHKERRQ(ierr); 7756bf464f9SBarry Smith ierr = VecDestroy(&baij->xx1);CHKERRQ(ierr); 776ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 77705b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 778a30f8f8cSSatish Balay #endif 77959ffdab8SBarry Smith ierr = PetscFree(baij->in_loc);CHKERRQ(ierr); 78059ffdab8SBarry Smith ierr = PetscFree(baij->v_loc);CHKERRQ(ierr); 781899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 782bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 783901853e0SKris Buschelman 784dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 785bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 786bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 787bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 788bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 789bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisbaij_mpisbstrm_C",NULL);CHKERRQ(ierr); 790a30f8f8cSSatish Balay PetscFunctionReturn(0); 791a30f8f8cSSatish Balay } 792a30f8f8cSSatish Balay 7934a2ae208SSatish Balay #undef __FUNCT__ 794547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian" 795547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy) 796547795f9SHong Zhang { 797547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 798547795f9SHong Zhang PetscErrorCode ierr; 799547795f9SHong Zhang PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 800547795f9SHong Zhang PetscScalar *x,*from; 801547795f9SHong Zhang 802547795f9SHong Zhang PetscFunctionBegin; 803547795f9SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 804e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 805547795f9SHong Zhang 806547795f9SHong Zhang /* diagonal part */ 807547795f9SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 808547795f9SHong Zhang ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 809547795f9SHong Zhang 810547795f9SHong Zhang /* subdiagonal part */ 811547795f9SHong Zhang ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 812547795f9SHong Zhang 813547795f9SHong Zhang /* copy x into the vec slvec0 */ 814547795f9SHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 815547795f9SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 816547795f9SHong Zhang 817547795f9SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 818547795f9SHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 819547795f9SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 820547795f9SHong Zhang 821547795f9SHong Zhang ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 822547795f9SHong Zhang ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 823547795f9SHong Zhang /* supperdiagonal part */ 824547795f9SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 825547795f9SHong Zhang PetscFunctionReturn(0); 826547795f9SHong Zhang } 827547795f9SHong Zhang 828547795f9SHong Zhang #undef __FUNCT__ 829a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 831a9d4b620SHong Zhang { 832a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834d0f46423SBarry Smith PetscInt nt,mbs=a->mbs,bs=A->rmap->bs; 835fa22f6d0SBarry Smith PetscScalar *x,*from; 836a9d4b620SHong Zhang 837a9d4b620SHong Zhang PetscFunctionBegin; 838a9d4b620SHong Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 839e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 840a9d4b620SHong Zhang 841a9d4b620SHong Zhang /* diagonal part */ 842a9d4b620SHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr); 843fa22f6d0SBarry Smith ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr); 844a9d4b620SHong Zhang 845a9d4b620SHong Zhang /* subdiagonal part */ 846a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 847fc165ae2SBarry Smith 848a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 8491ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 8501ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 851a9d4b620SHong Zhang 852fc165ae2SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 853fc165ae2SBarry Smith ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 8541ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 855fc165ae2SBarry Smith 856fc165ae2SBarry Smith ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 857ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 858a9d4b620SHong Zhang /* supperdiagonal part */ 859a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr); 860a9d4b620SHong Zhang PetscFunctionReturn(0); 861a9d4b620SHong Zhang } 862a9d4b620SHong Zhang 863a9d4b620SHong Zhang #undef __FUNCT__ 86440781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm" 865dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy) 866a30f8f8cSSatish Balay { 867a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 868dfbe8321SBarry Smith PetscErrorCode ierr; 8691302d50aSBarry Smith PetscInt nt; 870a30f8f8cSSatish Balay 871a30f8f8cSSatish Balay PetscFunctionBegin; 872a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 873e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 874e7e72b3dSBarry Smith 875a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 876e7e72b3dSBarry Smith if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 87765d70643SHong Zhang 878ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 879b941877fSHong Zhang /* do diagonal part */ 880b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 881b941877fSHong Zhang /* do supperdiagonal part */ 882ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 883b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 884b941877fSHong Zhang /* do subdiagonal part */ 885b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 886ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 887ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 888a30f8f8cSSatish Balay PetscFunctionReturn(0); 889a30f8f8cSSatish Balay } 890a30f8f8cSSatish Balay 8914a2ae208SSatish Balay #undef __FUNCT__ 8924a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ" 893dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 894a30f8f8cSSatish Balay { 895de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 897d0f46423SBarry Smith PetscInt mbs=a->mbs,bs=A->rmap->bs; 898a9d4b620SHong Zhang PetscScalar *x,*from,zero=0.0; 899a9d4b620SHong Zhang 900a9d4b620SHong Zhang PetscFunctionBegin; 901a9d4b620SHong Zhang /* 902ce94432eSBarry Smith PetscSynchronizedPrintf(PetscObjectComm((PetscObject)A)," MatMultAdd is called ...\n"); 903ce94432eSBarry Smith PetscSynchronizedFlush(PetscObjectComm((PetscObject)A)); 904a9d4b620SHong Zhang */ 905a9d4b620SHong Zhang /* diagonal part */ 906a9d4b620SHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr); 9072dcb1b2aSMatthew Knepley ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr); 908a9d4b620SHong Zhang 909a9d4b620SHong Zhang /* subdiagonal part */ 910a9d4b620SHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr); 911a9d4b620SHong Zhang 912a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 9131ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr); 9141ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 915a9d4b620SHong Zhang ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 9161ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr); 917a9d4b620SHong Zhang 918ca9f406cSSatish Balay ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 9191ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 920ca9f406cSSatish Balay ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 921a9d4b620SHong Zhang 922a9d4b620SHong Zhang /* supperdiagonal part */ 923a9d4b620SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr); 924a9d4b620SHong Zhang PetscFunctionReturn(0); 925a9d4b620SHong Zhang } 926a9d4b620SHong Zhang 927a9d4b620SHong Zhang #undef __FUNCT__ 928a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm" 929dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz) 930a9d4b620SHong Zhang { 931a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 932dfbe8321SBarry Smith PetscErrorCode ierr; 933a30f8f8cSSatish Balay 934a30f8f8cSSatish Balay PetscFunctionBegin; 935ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 936b941877fSHong Zhang /* do diagonal part */ 937b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 938b941877fSHong Zhang /* do supperdiagonal part */ 939ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 940de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 941de8b6608SHong Zhang 942b941877fSHong Zhang /* do subdiagonal part */ 943a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 944ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 945ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 946a30f8f8cSSatish Balay PetscFunctionReturn(0); 947a30f8f8cSSatish Balay } 948a30f8f8cSSatish Balay 949a30f8f8cSSatish Balay /* 950a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 951a30f8f8cSSatish Balay diagonal block 952a30f8f8cSSatish Balay */ 9534a2ae208SSatish Balay #undef __FUNCT__ 9544a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ" 955dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 956a30f8f8cSSatish Balay { 957a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 958dfbe8321SBarry Smith PetscErrorCode ierr; 959a30f8f8cSSatish Balay 960a30f8f8cSSatish Balay PetscFunctionBegin; 961e32f2f54SBarry Smith /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 962a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 963a30f8f8cSSatish Balay PetscFunctionReturn(0); 964a30f8f8cSSatish Balay } 965a30f8f8cSSatish Balay 9664a2ae208SSatish Balay #undef __FUNCT__ 9674a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ" 968f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa) 969a30f8f8cSSatish Balay { 970a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 971dfbe8321SBarry Smith PetscErrorCode ierr; 972a30f8f8cSSatish Balay 973a30f8f8cSSatish Balay PetscFunctionBegin; 974f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 975f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 976a30f8f8cSSatish Balay PetscFunctionReturn(0); 977a30f8f8cSSatish Balay } 978a30f8f8cSSatish Balay 9794a2ae208SSatish Balay #undef __FUNCT__ 9804a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ" 9811302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 982a30f8f8cSSatish Balay { 983d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 984d0d4cfc2SHong Zhang PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 985d0d4cfc2SHong Zhang PetscErrorCode ierr; 986d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 987d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 988899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->rstartbs; 989d0d4cfc2SHong Zhang 990a30f8f8cSSatish Balay PetscFunctionBegin; 991e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 992d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 993d0d4cfc2SHong Zhang 994d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 995d0d4cfc2SHong Zhang /* 996d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 997d0d4cfc2SHong Zhang */ 998d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 999d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1000d0d4cfc2SHong Zhang PetscInt max = 1,mbs = mat->mbs,tmp; 1001d0d4cfc2SHong Zhang for (i=0; i<mbs; i++) { 1002d0d4cfc2SHong Zhang tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 100326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1004d0d4cfc2SHong Zhang } 100574ed9c26SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1006d0d4cfc2SHong Zhang } 1007d0d4cfc2SHong Zhang 1008e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1009d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1010d0d4cfc2SHong Zhang 1011d0d4cfc2SHong Zhang pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1012d0d4cfc2SHong Zhang if (!v) {pvA = 0; pvB = 0;} 1013d0d4cfc2SHong Zhang if (!idx) {pcA = 0; if (!v) pcB = 0;} 1014d0d4cfc2SHong Zhang ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1015d0d4cfc2SHong Zhang ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1016d0d4cfc2SHong Zhang nztot = nzA + nzB; 1017d0d4cfc2SHong Zhang 1018d0d4cfc2SHong Zhang cmap = mat->garray; 1019d0d4cfc2SHong Zhang if (v || idx) { 1020d0d4cfc2SHong Zhang if (nztot) { 1021d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1022d0d4cfc2SHong Zhang PetscInt imark = -1; 1023d0d4cfc2SHong Zhang if (v) { 1024d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1025d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 1026d0d4cfc2SHong Zhang if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1027d0d4cfc2SHong Zhang else break; 1028d0d4cfc2SHong Zhang } 1029d0d4cfc2SHong Zhang imark = i; 1030d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1031d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1032d0d4cfc2SHong Zhang } 1033d0d4cfc2SHong Zhang if (idx) { 1034d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1035d0d4cfc2SHong Zhang if (imark > -1) { 1036d0d4cfc2SHong Zhang for (i=0; i<imark; i++) { 1037d0d4cfc2SHong Zhang idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1038d0d4cfc2SHong Zhang } 1039d0d4cfc2SHong Zhang } else { 1040d0d4cfc2SHong Zhang for (i=0; i<nzB; i++) { 104126fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1042d0d4cfc2SHong Zhang else break; 1043d0d4cfc2SHong Zhang } 1044d0d4cfc2SHong Zhang imark = i; 1045d0d4cfc2SHong Zhang } 1046d0d4cfc2SHong Zhang for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1047d0d4cfc2SHong Zhang for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1048d0d4cfc2SHong Zhang } 1049d0d4cfc2SHong Zhang } else { 1050d0d4cfc2SHong Zhang if (idx) *idx = 0; 1051d0d4cfc2SHong Zhang if (v) *v = 0; 1052d0d4cfc2SHong Zhang } 1053d0d4cfc2SHong Zhang } 1054d0d4cfc2SHong Zhang *nz = nztot; 1055d0d4cfc2SHong Zhang ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1056d0d4cfc2SHong Zhang ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1057a30f8f8cSSatish Balay PetscFunctionReturn(0); 1058a30f8f8cSSatish Balay } 1059a30f8f8cSSatish Balay 10604a2ae208SSatish Balay #undef __FUNCT__ 10614a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ" 10621302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1063a30f8f8cSSatish Balay { 1064a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1065a30f8f8cSSatish Balay 1066a30f8f8cSSatish Balay PetscFunctionBegin; 1067e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first"); 1068a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1069a30f8f8cSSatish Balay PetscFunctionReturn(0); 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 1073d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ" 1074d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1075d0d4cfc2SHong Zhang { 1076d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1077d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1078d0d4cfc2SHong Zhang 1079d0d4cfc2SHong Zhang PetscFunctionBegin; 1080d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 1081d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1082d0d4cfc2SHong Zhang } 1083d0d4cfc2SHong Zhang #undef __FUNCT__ 1084d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ" 1085d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1086d0d4cfc2SHong Zhang { 1087d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1088d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1089d0d4cfc2SHong Zhang 1090d0d4cfc2SHong Zhang PetscFunctionBegin; 1091d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 1092d0d4cfc2SHong Zhang PetscFunctionReturn(0); 1093d0d4cfc2SHong Zhang } 1094d0d4cfc2SHong Zhang 1095d0d4cfc2SHong Zhang #undef __FUNCT__ 109699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ" 109799cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 109899cafbc1SBarry Smith { 109999cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 110099cafbc1SBarry Smith PetscErrorCode ierr; 110199cafbc1SBarry Smith 110299cafbc1SBarry Smith PetscFunctionBegin; 110399cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 110499cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 110599cafbc1SBarry Smith PetscFunctionReturn(0); 110699cafbc1SBarry Smith } 110799cafbc1SBarry Smith 110899cafbc1SBarry Smith #undef __FUNCT__ 110999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ" 111099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 111199cafbc1SBarry Smith { 111299cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 111399cafbc1SBarry Smith PetscErrorCode ierr; 111499cafbc1SBarry Smith 111599cafbc1SBarry Smith PetscFunctionBegin; 111699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 111799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 111899cafbc1SBarry Smith PetscFunctionReturn(0); 111999cafbc1SBarry Smith } 112099cafbc1SBarry Smith 112199cafbc1SBarry Smith #undef __FUNCT__ 11224a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ" 1123dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1124a30f8f8cSSatish Balay { 1125a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1126dfbe8321SBarry Smith PetscErrorCode ierr; 1127a30f8f8cSSatish Balay 1128a30f8f8cSSatish Balay PetscFunctionBegin; 1129a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1130a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1131a30f8f8cSSatish Balay PetscFunctionReturn(0); 1132a30f8f8cSSatish Balay } 1133a30f8f8cSSatish Balay 11344a2ae208SSatish Balay #undef __FUNCT__ 11354a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ" 1136dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1137a30f8f8cSSatish Balay { 1138a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1139a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1140dfbe8321SBarry Smith PetscErrorCode ierr; 1141a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1142a30f8f8cSSatish Balay 1143a30f8f8cSSatish Balay PetscFunctionBegin; 1144d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 114526fbe8dcSKarl Rupp 1146a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 114726fbe8dcSKarl Rupp 1148a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1149a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 115026fbe8dcSKarl Rupp 1151a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 115226fbe8dcSKarl Rupp 1153a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1154a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1155a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1156a30f8f8cSSatish Balay info->nz_used = isend[0]; 1157a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1158a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1159a30f8f8cSSatish Balay info->memory = isend[3]; 1160a30f8f8cSSatish Balay info->mallocs = isend[4]; 1161a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1162ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 116326fbe8dcSKarl Rupp 1164a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1165a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1166a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1167a30f8f8cSSatish Balay info->memory = irecv[3]; 1168a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1169a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1170ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 117126fbe8dcSKarl Rupp 1172a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1173a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1174a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1175a30f8f8cSSatish Balay info->memory = irecv[3]; 1176a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1177f23aa3ddSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 1178a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1179a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1180a30f8f8cSSatish Balay info->factor_mallocs = 0; 1181a30f8f8cSSatish Balay PetscFunctionReturn(0); 1182a30f8f8cSSatish Balay } 1183a30f8f8cSSatish Balay 11844a2ae208SSatish Balay #undef __FUNCT__ 11854a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ" 1186ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg) 1187a30f8f8cSSatish Balay { 1188a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1189d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ*)a->A->data; 1190dfbe8321SBarry Smith PetscErrorCode ierr; 1191a30f8f8cSSatish Balay 1192a30f8f8cSSatish Balay PetscFunctionBegin; 1193e98b92d7SKris Buschelman switch (op) { 1194512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1195e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 119628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1197a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1198e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 11994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12004e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1201e98b92d7SKris Buschelman break; 1202e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 12034e0d8c25SBarry Smith a->roworiented = flg; 120426fbe8dcSKarl Rupp 12054e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 12064e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 1207e98b92d7SKris Buschelman break; 12084e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1209290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1210e98b92d7SKris Buschelman break; 1211e98b92d7SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 12124e0d8c25SBarry Smith a->donotstash = flg; 1213e98b92d7SKris Buschelman break; 1214e98b92d7SKris Buschelman case MAT_USE_HASH_TABLE: 12154e0d8c25SBarry Smith a->ht_flag = flg; 1216e98b92d7SKris Buschelman break; 12179a4540c5SBarry Smith case MAT_HERMITIAN: 1218e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 1219eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 122026fbe8dcSKarl Rupp 1221547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1222eeffb40dSHong Zhang break; 1223ffa07934SHong Zhang case MAT_SPD: 1224ffa07934SHong Zhang A->spd_set = PETSC_TRUE; 1225ffa07934SHong Zhang A->spd = flg; 1226ffa07934SHong Zhang if (flg) { 1227ffa07934SHong Zhang A->symmetric = PETSC_TRUE; 1228ffa07934SHong Zhang A->structurally_symmetric = PETSC_TRUE; 1229ffa07934SHong Zhang A->symmetric_set = PETSC_TRUE; 1230ffa07934SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 1231ffa07934SHong Zhang } 1232ffa07934SHong Zhang break; 123377e54ba9SKris Buschelman case MAT_SYMMETRIC: 1234eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1235eeffb40dSHong Zhang break; 123677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1237eeffb40dSHong Zhang ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 1238eeffb40dSHong Zhang break; 12399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1240e32f2f54SBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric"); 1241290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 124277e54ba9SKris Buschelman break; 1243d0d4cfc2SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 12444e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1245d0d4cfc2SHong Zhang break; 1246d0d4cfc2SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 12474e0d8c25SBarry Smith aA->ignore_ltriangular = flg; 1248d0d4cfc2SHong Zhang break; 1249d0d4cfc2SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 12504e0d8c25SBarry Smith aA->getrow_utriangular = flg; 1251d0d4cfc2SHong Zhang break; 1252e98b92d7SKris Buschelman default: 1253e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 1254a30f8f8cSSatish Balay } 1255a30f8f8cSSatish Balay PetscFunctionReturn(0); 1256a30f8f8cSSatish Balay } 1257a30f8f8cSSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12598115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ" 1260fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B) 1261a30f8f8cSSatish Balay { 1262dfbe8321SBarry Smith PetscErrorCode ierr; 12636e111a19SKarl Rupp 1264a30f8f8cSSatish Balay PetscFunctionBegin; 1265815cbec1SBarry Smith if (MAT_INITIAL_MATRIX || *B != A) { 1266999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 1267fc4dec0aSBarry Smith } 12688115998fSBarry Smith PetscFunctionReturn(0); 1269a30f8f8cSSatish Balay } 1270a30f8f8cSSatish Balay 12714a2ae208SSatish Balay #undef __FUNCT__ 12724a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ" 1273dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1274a30f8f8cSSatish Balay { 1275a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1276a30f8f8cSSatish Balay Mat a = baij->A, b=baij->B; 1277dfbe8321SBarry Smith PetscErrorCode ierr; 12785e90f9d9SHong Zhang PetscInt nv,m,n; 1279ace3abfcSBarry Smith PetscBool flg; 1280a30f8f8cSSatish Balay 1281a30f8f8cSSatish Balay PetscFunctionBegin; 1282a30f8f8cSSatish Balay if (ll != rr) { 1283b3bf805bSHong Zhang ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr); 1284e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n"); 1285a30f8f8cSSatish Balay } 1286b3bf805bSHong Zhang if (!ll) PetscFunctionReturn(0); 1287b3bf805bSHong Zhang 12885e90f9d9SHong Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1289e32f2f54SBarry Smith if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n); 1290b3bf805bSHong Zhang 12915e90f9d9SHong Zhang ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr); 1292e32f2f54SBarry Smith if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size"); 12935e90f9d9SHong Zhang 1294ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 12955e90f9d9SHong Zhang 12965e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 12970298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 12985e90f9d9SHong Zhang 12995e90f9d9SHong Zhang /* scale the diagonal part */ 1300a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1301a30f8f8cSSatish Balay 13025e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 1303ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 13040298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay PetscFunctionReturn(0); 1306a30f8f8cSSatish Balay } 1307a30f8f8cSSatish Balay 13084a2ae208SSatish Balay #undef __FUNCT__ 13094a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ" 1310dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1311a30f8f8cSSatish Balay { 1312f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1313dfbe8321SBarry Smith PetscErrorCode ierr; 1314a30f8f8cSSatish Balay 1315a30f8f8cSSatish Balay PetscFunctionBegin; 1316a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1317a30f8f8cSSatish Balay PetscFunctionReturn(0); 1318a30f8f8cSSatish Balay } 1319a30f8f8cSSatish Balay 13206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat*); 1321a30f8f8cSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ" 1324ace3abfcSBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool *flag) 1325a30f8f8cSSatish Balay { 1326a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1327a30f8f8cSSatish Balay Mat a,b,c,d; 1328ace3abfcSBarry Smith PetscBool flg; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330a30f8f8cSSatish Balay 1331a30f8f8cSSatish Balay PetscFunctionBegin; 1332a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1333a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1334a30f8f8cSSatish Balay 1335a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1336abc0a331SBarry Smith if (flg) { 1337a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1338a30f8f8cSSatish Balay } 1339ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1340a30f8f8cSSatish Balay PetscFunctionReturn(0); 1341a30f8f8cSSatish Balay } 1342a30f8f8cSSatish Balay 13434a2ae208SSatish Balay #undef __FUNCT__ 13443c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ" 13453c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str) 13463c896bc6SHong Zhang { 13473c896bc6SHong Zhang PetscErrorCode ierr; 13483c896bc6SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 13493c896bc6SHong Zhang Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)B->data; 13503c896bc6SHong Zhang 13513c896bc6SHong Zhang PetscFunctionBegin; 13523c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 13533c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 1354d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 13553c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1356d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 13573c896bc6SHong Zhang } else { 13583c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 13593c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 13603c896bc6SHong Zhang } 13613c896bc6SHong Zhang PetscFunctionReturn(0); 13623c896bc6SHong Zhang } 13633c896bc6SHong Zhang 13643c896bc6SHong Zhang #undef __FUNCT__ 13654994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPISBAIJ" 13664994cf47SJed Brown PetscErrorCode MatSetUp_MPISBAIJ(Mat A) 1367273d9f13SBarry Smith { 1368dfbe8321SBarry Smith PetscErrorCode ierr; 1369273d9f13SBarry Smith 1370273d9f13SBarry Smith PetscFunctionBegin; 1371535b19f3SBarry Smith ierr = MatMPISBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1372273d9f13SBarry Smith PetscFunctionReturn(0); 1373273d9f13SBarry Smith } 1374a5e6ed63SBarry Smith 13754fe895cdSHong Zhang #undef __FUNCT__ 13764fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ" 13774fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 13784fe895cdSHong Zhang { 13794fe895cdSHong Zhang PetscErrorCode ierr; 13804fe895cdSHong Zhang Mat_MPISBAIJ *xx=(Mat_MPISBAIJ*)X->data,*yy=(Mat_MPISBAIJ*)Y->data; 13814fe895cdSHong Zhang PetscBLASInt bnz,one=1; 13824fe895cdSHong Zhang Mat_SeqSBAIJ *xa,*ya; 13834fe895cdSHong Zhang Mat_SeqBAIJ *xb,*yb; 13844fe895cdSHong Zhang 13854fe895cdSHong Zhang PetscFunctionBegin; 13864fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 13874fe895cdSHong Zhang PetscScalar alpha = a; 13884fe895cdSHong Zhang xa = (Mat_SeqSBAIJ*)xx->A->data; 13894fe895cdSHong Zhang ya = (Mat_SeqSBAIJ*)yy->A->data; 1390c5df96a5SBarry Smith ierr = PetscBLASIntCast(xa->nz,&bnz);CHKERRQ(ierr); 13918b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one)); 13924fe895cdSHong Zhang xb = (Mat_SeqBAIJ*)xx->B->data; 13934fe895cdSHong Zhang yb = (Mat_SeqBAIJ*)yy->B->data; 1394c5df96a5SBarry Smith ierr = PetscBLASIntCast(xb->nz,&bnz);CHKERRQ(ierr); 13958b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one)); 13964fe895cdSHong Zhang } else { 1397d0d4cfc2SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 13984fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1399d0d4cfc2SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 14004fe895cdSHong Zhang } 14014fe895cdSHong Zhang PetscFunctionReturn(0); 14024fe895cdSHong Zhang } 14034fe895cdSHong Zhang 1404a5e6ed63SBarry Smith #undef __FUNCT__ 1405a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ" 14061302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1407a5e6ed63SBarry Smith { 14086849ba73SBarry Smith PetscErrorCode ierr; 14091302d50aSBarry Smith PetscInt i; 1410ace3abfcSBarry Smith PetscBool flg; 1411a5e6ed63SBarry Smith 14126849ba73SBarry Smith PetscFunctionBegin; 1413a5e6ed63SBarry Smith for (i=0; i<n; i++) { 1414a5e6ed63SBarry Smith ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr); 1415e7e72b3dSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices"); 1416a5e6ed63SBarry Smith } 1417a5e6ed63SBarry Smith ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr); 1418a5e6ed63SBarry Smith PetscFunctionReturn(0); 1419a5e6ed63SBarry Smith } 1420a5e6ed63SBarry Smith 1421a5e6ed63SBarry Smith 1422a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 14233964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1424a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1425a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1426a9d4b620SHong Zhang MatMult_MPISBAIJ, 142797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1428431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1429431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1430a30f8f8cSSatish Balay 0, 1431a30f8f8cSSatish Balay 0, 1432a30f8f8cSSatish Balay 0, 143397304618SKris Buschelman /* 10*/ 0, 1434a30f8f8cSSatish Balay 0, 1435a30f8f8cSSatish Balay 0, 143641f059aeSBarry Smith MatSOR_MPISBAIJ, 1437a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 143897304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1439a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1440a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1441a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1442a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 144397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1444a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1445a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1446a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1447d519adbfSMatthew Knepley /* 24*/ 0, 1448a30f8f8cSSatish Balay 0, 1449a30f8f8cSSatish Balay 0, 1450a30f8f8cSSatish Balay 0, 1451a30f8f8cSSatish Balay 0, 14524994cf47SJed Brown /* 29*/ MatSetUp_MPISBAIJ, 1453b5df2d14SHong Zhang 0, 1454a30f8f8cSSatish Balay 0, 1455a30f8f8cSSatish Balay 0, 1456a30f8f8cSSatish Balay 0, 1457d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1458a30f8f8cSSatish Balay 0, 1459a30f8f8cSSatish Balay 0, 1460a30f8f8cSSatish Balay 0, 1461a30f8f8cSSatish Balay 0, 1462d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 1463a5e6ed63SBarry Smith MatGetSubMatrices_MPISBAIJ, 1464d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1465a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 14663c896bc6SHong Zhang MatCopy_MPISBAIJ, 1467d519adbfSMatthew Knepley /* 44*/ 0, 1468a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1469a30f8f8cSSatish Balay 0, 1470a30f8f8cSSatish Balay 0, 1471a30f8f8cSSatish Balay 0, 1472f73d5cc4SBarry Smith /* 49*/ 0, 1473a30f8f8cSSatish Balay 0, 1474a30f8f8cSSatish Balay 0, 1475a30f8f8cSSatish Balay 0, 1476a30f8f8cSSatish Balay 0, 1477d519adbfSMatthew Knepley /* 54*/ 0, 1478a30f8f8cSSatish Balay 0, 1479a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1482d519adbfSMatthew Knepley /* 59*/ 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485357abbc8SBarry Smith 0, 148624d5174aSHong Zhang 0, 1487d519adbfSMatthew Knepley /* 64*/ 0, 148824d5174aSHong Zhang 0, 148924d5174aSHong Zhang 0, 149024d5174aSHong Zhang 0, 149124d5174aSHong Zhang 0, 1492d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 149324d5174aSHong Zhang 0, 149497304618SKris Buschelman 0, 149597304618SKris Buschelman 0, 149697304618SKris Buschelman 0, 1497d519adbfSMatthew Knepley /* 74*/ 0, 149897304618SKris Buschelman 0, 149997304618SKris Buschelman 0, 150097304618SKris Buschelman 0, 150197304618SKris Buschelman 0, 1502d519adbfSMatthew Knepley /* 79*/ 0, 150397304618SKris Buschelman 0, 150497304618SKris Buschelman 0, 150597304618SKris Buschelman 0, 15065bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1507d519adbfSMatthew Knepley /* 84*/ 0, 1508865e5f61SKris Buschelman 0, 1509865e5f61SKris Buschelman 0, 1510865e5f61SKris Buschelman 0, 1511865e5f61SKris Buschelman 0, 1512d519adbfSMatthew Knepley /* 89*/ 0, 1513865e5f61SKris Buschelman 0, 1514865e5f61SKris Buschelman 0, 1515865e5f61SKris Buschelman 0, 1516865e5f61SKris Buschelman 0, 1517d519adbfSMatthew Knepley /* 94*/ 0, 1518865e5f61SKris Buschelman 0, 1519865e5f61SKris Buschelman 0, 152099cafbc1SBarry Smith 0, 152199cafbc1SBarry Smith 0, 1522d519adbfSMatthew Knepley /* 99*/ 0, 152399cafbc1SBarry Smith 0, 152499cafbc1SBarry Smith 0, 152599cafbc1SBarry Smith 0, 152699cafbc1SBarry Smith 0, 1527d519adbfSMatthew Knepley /*104*/ 0, 152899cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1529d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1530d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 153195936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 153295936485SShri Abhyankar /*109*/ 0, 153395936485SShri Abhyankar 0, 153495936485SShri Abhyankar 0, 153595936485SShri Abhyankar 0, 153695936485SShri Abhyankar 0, 153795936485SShri Abhyankar /*114*/ 0, 153895936485SShri Abhyankar 0, 153995936485SShri Abhyankar 0, 154095936485SShri Abhyankar 0, 154195936485SShri Abhyankar 0, 154295936485SShri Abhyankar /*119*/ 0, 154395936485SShri Abhyankar 0, 154495936485SShri Abhyankar 0, 15453964eb88SJed Brown 0, 15463964eb88SJed Brown 0, 15473964eb88SJed Brown /*124*/ 0, 15483964eb88SJed Brown 0, 15493964eb88SJed Brown 0, 15503964eb88SJed Brown 0, 15513964eb88SJed Brown 0, 15523964eb88SJed Brown /*129*/ 0, 15533964eb88SJed Brown 0, 15543964eb88SJed Brown 0, 15553964eb88SJed Brown 0, 15563964eb88SJed Brown 0, 15573964eb88SJed Brown /*134*/ 0, 15583964eb88SJed Brown 0, 15593964eb88SJed Brown 0, 15603964eb88SJed Brown 0, 15613964eb88SJed Brown 0, 15623964eb88SJed Brown /*139*/ 0, 1563*f9426fe0SMark Adams 0, 15645bba2384SShri Abhyankar 0 156599cafbc1SBarry Smith }; 1566a30f8f8cSSatish Balay 1567a30f8f8cSSatish Balay 15684a2ae208SSatish Balay #undef __FUNCT__ 15694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ" 157011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat *a) 1571a30f8f8cSSatish Balay { 1572a30f8f8cSSatish Balay PetscFunctionBegin; 1573a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ*)A->data)->A; 1574a30f8f8cSSatish Balay PetscFunctionReturn(0); 1575a30f8f8cSSatish Balay } 1576a30f8f8cSSatish Balay 15774a2ae208SSatish Balay #undef __FUNCT__ 1578a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ" 1579b2573a8aSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 1580a23d5eceSKris Buschelman { 1581a23d5eceSKris Buschelman Mat_MPISBAIJ *b; 1582dfbe8321SBarry Smith PetscErrorCode ierr; 1583535b19f3SBarry Smith PetscInt i,mbs,Mbs; 1584a23d5eceSKris Buschelman 1585a23d5eceSKris Buschelman PetscFunctionBegin; 1586535b19f3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1587535b19f3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 158826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 158926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1590e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1591899cda47SBarry Smith 1592a23d5eceSKris Buschelman b = (Mat_MPISBAIJ*)B->data; 1593d0f46423SBarry Smith mbs = B->rmap->n/bs; 1594d0f46423SBarry Smith Mbs = B->rmap->N/bs; 1595c2fc9fa9SBarry Smith if (mbs*bs != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs); 1596a23d5eceSKris Buschelman 1597d0f46423SBarry Smith B->rmap->bs = bs; 1598a23d5eceSKris Buschelman b->bs2 = bs*bs; 1599a23d5eceSKris Buschelman b->mbs = mbs; 1600a23d5eceSKris Buschelman b->nbs = mbs; 1601a23d5eceSKris Buschelman b->Mbs = Mbs; 1602a23d5eceSKris Buschelman b->Nbs = Mbs; 1603a23d5eceSKris Buschelman 1604a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 1605d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 1606a23d5eceSKris Buschelman } 1607d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 1608d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 1609a23d5eceSKris Buschelman 1610d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 1611d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 1612a23d5eceSKris Buschelman 1613526dfc15SBarry Smith if (!B->preallocated) { 1614f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1615d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 16169c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr); 16173bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1618f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1619d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 16204aea0f9eSHong Zhang ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 16213bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1622ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 1623526dfc15SBarry Smith } 1624a23d5eceSKris Buschelman 1625526dfc15SBarry Smith ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 1626526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 162726fbe8dcSKarl Rupp 1628526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 1629a23d5eceSKris Buschelman PetscFunctionReturn(0); 1630a23d5eceSKris Buschelman } 1631a23d5eceSKris Buschelman 1632dfb205c3SBarry Smith #undef __FUNCT__ 1633dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR_MPISBAIJ" 1634dfb205c3SBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 1635dfb205c3SBarry Smith { 1636dfb205c3SBarry Smith PetscInt m,rstart,cstart,cend; 1637dfb205c3SBarry Smith PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 1638dfb205c3SBarry Smith const PetscInt *JJ =0; 1639dfb205c3SBarry Smith PetscScalar *values=0; 1640dfb205c3SBarry Smith PetscErrorCode ierr; 1641dfb205c3SBarry Smith 1642dfb205c3SBarry Smith PetscFunctionBegin; 1643ce94432eSBarry Smith if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 1644dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 1645dfb205c3SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 1646dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1647dfb205c3SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1648e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1649dfb205c3SBarry Smith m = B->rmap->n/bs; 1650dfb205c3SBarry Smith rstart = B->rmap->rstart/bs; 1651dfb205c3SBarry Smith cstart = B->cmap->rstart/bs; 1652dfb205c3SBarry Smith cend = B->cmap->rend/bs; 1653dfb205c3SBarry Smith 1654dfb205c3SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1655dfb205c3SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 1656dfb205c3SBarry Smith for (i=0; i<m; i++) { 1657dfb205c3SBarry Smith nz = ii[i+1] - ii[i]; 1658dfb205c3SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 1659dfb205c3SBarry Smith nz_max = PetscMax(nz_max,nz); 1660dfb205c3SBarry Smith JJ = jj + ii[i]; 1661dfb205c3SBarry Smith for (j=0; j<nz; j++) { 1662dfb205c3SBarry Smith if (*JJ >= cstart) break; 1663dfb205c3SBarry Smith JJ++; 1664dfb205c3SBarry Smith } 1665dfb205c3SBarry Smith d = 0; 1666dfb205c3SBarry Smith for (; j<nz; j++) { 1667dfb205c3SBarry Smith if (*JJ++ >= cend) break; 1668dfb205c3SBarry Smith d++; 1669dfb205c3SBarry Smith } 1670dfb205c3SBarry Smith d_nnz[i] = d; 1671dfb205c3SBarry Smith o_nnz[i] = nz - d; 1672dfb205c3SBarry Smith } 1673dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 1674dfb205c3SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 1675dfb205c3SBarry Smith 1676dfb205c3SBarry Smith values = (PetscScalar*)V; 1677dfb205c3SBarry Smith if (!values) { 1678dfb205c3SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 1679dfb205c3SBarry Smith ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 1680dfb205c3SBarry Smith } 1681dfb205c3SBarry Smith for (i=0; i<m; i++) { 1682dfb205c3SBarry Smith PetscInt row = i + rstart; 1683dfb205c3SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 1684dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 1685dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 1686dfb205c3SBarry Smith ierr = MatSetValuesBlocked_MPISBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 1687dfb205c3SBarry Smith } 1688dfb205c3SBarry Smith 1689dfb205c3SBarry Smith if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 1690dfb205c3SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1691dfb205c3SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16927827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 1693dfb205c3SBarry Smith PetscFunctionReturn(0); 1694dfb205c3SBarry Smith } 1695dfb205c3SBarry Smith 1696611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 16978cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*); 1698611f576cSBarry Smith #endif 1699b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 17008cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*); 1701b5e56a35SBarry Smith #endif 17025c9eb25fSBarry Smith 17030bad9183SKris Buschelman /*MC 1704fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 1705828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 1706828413b8SBarry Smith the matrix is stored. 1707828413b8SBarry Smith 1708828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1709828413b8SBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); 17100bad9183SKris Buschelman 17110bad9183SKris Buschelman Options Database Keys: 17120bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions() 17130bad9183SKris Buschelman 17140bad9183SKris Buschelman Level: beginner 17150bad9183SKris Buschelman 17160bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ 17170bad9183SKris Buschelman M*/ 17180bad9183SKris Buschelman 17198cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPISBAIJ_MPISBSTRM(Mat,MatType,MatReuse,Mat*); 1720aa5a9175SDahai Guo 1721a23d5eceSKris Buschelman #undef __FUNCT__ 17224a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ" 17238cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 1724b5df2d14SHong Zhang { 1725b5df2d14SHong Zhang Mat_MPISBAIJ *b; 1726dfbe8321SBarry Smith PetscErrorCode ierr; 1727ace3abfcSBarry Smith PetscBool flg; 1728b5df2d14SHong Zhang 1729b5df2d14SHong Zhang PetscFunctionBegin; 173038f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr); 1731b0a32e0cSBarry Smith B->data = (void*)b; 1732b5df2d14SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1733b5df2d14SHong Zhang 1734b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 1735b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 1736b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 1737b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 173826fbe8dcSKarl Rupp 1739ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 1740ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 1741b5df2d14SHong Zhang 1742b5df2d14SHong Zhang /* build local table of row and column ownerships */ 1743899cda47SBarry Smith ierr = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 1744b5df2d14SHong Zhang 1745b5df2d14SHong Zhang /* build cache for off array entries formed */ 1746ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 174726fbe8dcSKarl Rupp 1748b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 17490298fd71SBarry Smith b->colmap = NULL; 17500298fd71SBarry Smith b->garray = NULL; 1751b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 1752b5df2d14SHong Zhang 1753b5df2d14SHong Zhang /* stuff used in block assembly */ 1754b5df2d14SHong Zhang b->barray = 0; 1755b5df2d14SHong Zhang 1756b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 1757b5df2d14SHong Zhang b->lvec = 0; 1758b5df2d14SHong Zhang b->Mvctx = 0; 175940781036SHong Zhang b->slvec0 = 0; 176040781036SHong Zhang b->slvec0b = 0; 176140781036SHong Zhang b->slvec1 = 0; 176240781036SHong Zhang b->slvec1a = 0; 176340781036SHong Zhang b->slvec1b = 0; 176440781036SHong Zhang b->sMvctx = 0; 1765b5df2d14SHong Zhang 1766b5df2d14SHong Zhang /* stuff for MatGetRow() */ 1767b5df2d14SHong Zhang b->rowindices = 0; 1768b5df2d14SHong Zhang b->rowvalues = 0; 1769b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 1770b5df2d14SHong Zhang 1771b5df2d14SHong Zhang /* hash table stuff */ 1772b5df2d14SHong Zhang b->ht = 0; 1773b5df2d14SHong Zhang b->hd = 0; 1774b5df2d14SHong Zhang b->ht_size = 0; 1775b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 1776b5df2d14SHong Zhang b->ht_fact = 0; 1777b5df2d14SHong Zhang b->ht_total_ct = 0; 1778b5df2d14SHong Zhang b->ht_insert_ct = 0; 1779b5df2d14SHong Zhang 17807a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 17817a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 17827a868f3eSHong Zhang 178359ffdab8SBarry Smith b->in_loc = 0; 178459ffdab8SBarry Smith b->v_loc = 0; 178559ffdab8SBarry Smith b->n_loc = 0; 1786ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr); 17870298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 1788b5df2d14SHong Zhang if (flg) { 1789f6275e2eSBarry Smith PetscReal fact = 1.39; 17904e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 17910298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 1792b5df2d14SHong Zhang if (fact <= 1.0) fact = 1.39; 1793b5df2d14SHong Zhang ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 17941e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 1795b5df2d14SHong Zhang } 17968c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 17978c07d4e3SBarry Smith 1798b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX) 1799bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_pastix_C",MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr); 1800b5e56a35SBarry Smith #endif 1801611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS) 1802bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_sbaij_mumps);CHKERRQ(ierr); 1803611f576cSBarry Smith #endif 1804bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1805bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1806bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1807bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr); 1808bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISBAIJSetPreallocationCSR_C",MatMPISBAIJSetPreallocationCSR_MPISBAIJ);CHKERRQ(ierr); 1809bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisbaij_mpisbstrm_C",MatConvert_MPISBAIJ_MPISBSTRM);CHKERRQ(ierr); 1810aa5a9175SDahai Guo 181123ce1328SBarry Smith B->symmetric = PETSC_TRUE; 181223ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 181323ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 181423ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 181526fbe8dcSKarl Rupp 181617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr); 1817b5df2d14SHong Zhang PetscFunctionReturn(0); 1818b5df2d14SHong Zhang } 1819b5df2d14SHong Zhang 1820209238afSKris Buschelman /*MC 1821002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 1822209238afSKris Buschelman 1823209238afSKris Buschelman This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator, 1824209238afSKris Buschelman and MATMPISBAIJ otherwise. 1825209238afSKris Buschelman 1826209238afSKris Buschelman Options Database Keys: 1827209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions() 1828209238afSKris Buschelman 1829209238afSKris Buschelman Level: beginner 1830209238afSKris Buschelman 1831209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ 1832209238afSKris Buschelman M*/ 1833209238afSKris Buschelman 18344a2ae208SSatish Balay #undef __FUNCT__ 18354a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation" 1836b5df2d14SHong Zhang /*@C 1837b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 1838b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 1839b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1840b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 1841b5df2d14SHong Zhang 1842b5df2d14SHong Zhang Collective on Mat 1843b5df2d14SHong Zhang 1844b5df2d14SHong Zhang Input Parameters: 1845b5df2d14SHong Zhang + A - the matrix 1846b5df2d14SHong Zhang . bs - size of blockk 1847b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 1848b5df2d14SHong Zhang submatrix (same for all local rows) 1849b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 18506d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 18510298fd71SBarry Smith (possibly different for each block row) or NULL. If you plan to factor the matrix you must leave room 185295742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 1853b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1854b5df2d14SHong Zhang submatrix (same for all local rows). 1855b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 1856c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 18570298fd71SBarry Smith (possibly different for each block row) or NULL. 1858b5df2d14SHong Zhang 1859b5df2d14SHong Zhang 1860b5df2d14SHong Zhang Options Database Keys: 1861b5df2d14SHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1862b5df2d14SHong Zhang block calculations (much slower) 1863b5df2d14SHong Zhang . -mat_block_size - size of the blocks to use 1864b5df2d14SHong Zhang 1865b5df2d14SHong Zhang Notes: 1866b5df2d14SHong Zhang 1867b5df2d14SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1868b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 1869b5df2d14SHong Zhang 187049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 187149a6f317SBarry Smith 1872b5df2d14SHong Zhang Storage Information: 1873b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 1874b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1875b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1876b5df2d14SHong Zhang local matrix (a rectangular submatrix). 1877b5df2d14SHong Zhang 1878b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 1879b5df2d14SHong Zhang the local submatrix with either d_nz or d_nnz (not both). Set 18800298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 1881b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 1882b5df2d14SHong Zhang off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1883b5df2d14SHong Zhang 1884aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1885aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1886aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1887aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1888aa95bbe8SBarry Smith 1889b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1890b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 1891b5df2d14SHong Zhang 1892b5df2d14SHong Zhang .vb 1893b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 1894a4b1a0f6SJed Brown -------------------------- 1895c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 1896c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 1897c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 1898a4b1a0f6SJed Brown -------------------------- 1899b5df2d14SHong Zhang .ve 1900b5df2d14SHong Zhang 1901b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 1902b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 19036d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 19046d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 1905b5df2d14SHong Zhang 19066d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 19076d10fdaeSSatish Balay plus the diagonal part of the d matrix, 1908c2fc9fa9SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix 1909c2fc9fa9SBarry Smith 1910b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 1911b5df2d14SHong Zhang one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1912b5df2d14SHong Zhang or you will get TERRIBLE performance; see the users' manual chapter on 1913b5df2d14SHong Zhang matrices. 1914b5df2d14SHong Zhang 1915b5df2d14SHong Zhang Level: intermediate 1916b5df2d14SHong Zhang 1917b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel 1918b5df2d14SHong Zhang 1919ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ(), PetscSplitOwnership() 1920b5df2d14SHong Zhang @*/ 19217087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1922b5df2d14SHong Zhang { 19234ac538c5SBarry Smith PetscErrorCode ierr; 1924b5df2d14SHong Zhang 1925b5df2d14SHong Zhang PetscFunctionBegin; 19266ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19276ba663aaSJed Brown PetscValidType(B,1); 19286ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19294ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 1930b5df2d14SHong Zhang PetscFunctionReturn(0); 1931b5df2d14SHong Zhang } 1932b5df2d14SHong Zhang 19334a2ae208SSatish Balay #undef __FUNCT__ 193469b1f4b7SBarry Smith #define __FUNCT__ "MatCreateSBAIJ" 1935a30f8f8cSSatish Balay /*@C 193669b1f4b7SBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1937a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1938a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1939a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1940a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1941a30f8f8cSSatish Balay 1942a30f8f8cSSatish Balay Collective on MPI_Comm 1943a30f8f8cSSatish Balay 1944a30f8f8cSSatish Balay Input Parameters: 1945a30f8f8cSSatish Balay + comm - MPI communicator 1946a30f8f8cSSatish Balay . bs - size of blockk 1947a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1948a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1949a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1950a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1951a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1952a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1953a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1954a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1955a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1956a30f8f8cSSatish Balay submatrix (same for all local rows) 1957a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 19586d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 19590298fd71SBarry Smith (possibly different for each block block row) or NULL. 196095742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 196195742e49SBarry Smith set its value even if it is zero. 1962a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1963a30f8f8cSSatish Balay submatrix (same for all local rows). 1964a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1965a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 19660298fd71SBarry Smith each block row) or NULL. 1967a30f8f8cSSatish Balay 1968a30f8f8cSSatish Balay Output Parameter: 1969a30f8f8cSSatish Balay . A - the matrix 1970a30f8f8cSSatish Balay 1971a30f8f8cSSatish Balay Options Database Keys: 1972a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1973a30f8f8cSSatish Balay block calculations (much slower) 1974a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1975a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1976a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1977a30f8f8cSSatish Balay 1978175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1979ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 1980175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1981175b88e8SBarry Smith 1982a30f8f8cSSatish Balay Notes: 1983d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 19846d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 1985d1be2dadSMatthew Knepley 1986a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1987a30f8f8cSSatish Balay (possibly both). 1988a30f8f8cSSatish Balay 1989a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1990a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1991a30f8f8cSSatish Balay 199249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 199349a6f317SBarry Smith 1994a30f8f8cSSatish Balay Storage Information: 1995a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1996a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1997a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1998a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1999a30f8f8cSSatish Balay 2000a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 2001a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 20020298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2003a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 2004a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2005a30f8f8cSSatish Balay 2006a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2007a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2008a30f8f8cSSatish Balay 2009a30f8f8cSSatish Balay .vb 2010a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2011a4b1a0f6SJed Brown -------------------------- 2012c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2013c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2014c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2015a4b1a0f6SJed Brown -------------------------- 2016a30f8f8cSSatish Balay .ve 2017a30f8f8cSSatish Balay 2018a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2019a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 20206d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 20216d10fdaeSSatish Balay MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format. 2022a30f8f8cSSatish Balay 20236d10fdaeSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the upper triangular 20246d10fdaeSSatish Balay plus the diagonal part of the d matrix, 2025a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 2026a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 2027a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2028a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 2029a30f8f8cSSatish Balay matrices. 2030a30f8f8cSSatish Balay 2031a30f8f8cSSatish Balay Level: intermediate 2032a30f8f8cSSatish Balay 2033a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 2034a30f8f8cSSatish Balay 203569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateBAIJ() 2036a30f8f8cSSatish Balay @*/ 2037a30f8f8cSSatish Balay 203869b1f4b7SBarry Smith PetscErrorCode MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 2039a30f8f8cSSatish Balay { 20406849ba73SBarry Smith PetscErrorCode ierr; 20411302d50aSBarry Smith PetscMPIInt size; 2042a30f8f8cSSatish Balay 2043a30f8f8cSSatish Balay PetscFunctionBegin; 2044f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2045f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2046273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2047273d9f13SBarry Smith if (size > 1) { 2048b5df2d14SHong Zhang ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr); 2049b5df2d14SHong Zhang ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2050273d9f13SBarry Smith } else { 2051273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2052273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2053273d9f13SBarry Smith } 2054a30f8f8cSSatish Balay PetscFunctionReturn(0); 2055a30f8f8cSSatish Balay } 2056a30f8f8cSSatish Balay 2057a30f8f8cSSatish Balay 20584a2ae208SSatish Balay #undef __FUNCT__ 20594a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ" 20606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 2061a30f8f8cSSatish Balay { 2062a30f8f8cSSatish Balay Mat mat; 2063a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 2064dfbe8321SBarry Smith PetscErrorCode ierr; 2065d0f46423SBarry Smith PetscInt len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs; 2066387bc808SHong Zhang PetscScalar *array; 2067a30f8f8cSSatish Balay 2068a30f8f8cSSatish Balay PetscFunctionBegin; 2069a30f8f8cSSatish Balay *newmat = 0; 207026fbe8dcSKarl Rupp 2071ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 2072d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 20737adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 20741d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 20751e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 20761e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 2077e1b6402fSHong Zhang 2078d5f3da31SBarry Smith mat->factortype = matin->factortype; 2079273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 208082327fa8SHong Zhang mat->assembled = PETSC_TRUE; 20817fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 20827fff6886SHong Zhang 2083b5df2d14SHong Zhang a = (Mat_MPISBAIJ*)mat->data; 2084a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2085a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2086a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2087a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2088a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2089a30f8f8cSSatish Balay 2090899cda47SBarry Smith 2091a30f8f8cSSatish Balay a->size = oldmat->size; 2092a30f8f8cSSatish Balay a->rank = oldmat->rank; 2093a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2094a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2095a30f8f8cSSatish Balay a->rowindices = 0; 2096a30f8f8cSSatish Balay a->rowvalues = 0; 2097a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2098a30f8f8cSSatish Balay a->barray = 0; 2099899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2100899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2101899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2102899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2103a30f8f8cSSatish Balay 2104a30f8f8cSSatish Balay /* hash table stuff */ 2105a30f8f8cSSatish Balay a->ht = 0; 2106a30f8f8cSSatish Balay a->hd = 0; 2107a30f8f8cSSatish Balay a->ht_size = 0; 2108a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2109a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2110a30f8f8cSSatish Balay a->ht_total_ct = 0; 2111a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2112a30f8f8cSSatish Balay 2113899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 2114a30f8f8cSSatish Balay if (oldmat->colmap) { 2115a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2116a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay #else 21181302d50aSBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 21193bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 21201302d50aSBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2121a30f8f8cSSatish Balay #endif 2122a30f8f8cSSatish Balay } else a->colmap = 0; 2123387bc808SHong Zhang 2124a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 21251302d50aSBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 21263bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 21271302d50aSBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 2128a30f8f8cSSatish Balay } else a->garray = 0; 2129a30f8f8cSSatish Balay 2130ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 2131a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 21323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 2133a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 21343bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 213582327fa8SHong Zhang 213682327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr); 21373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 213882327fa8SHong Zhang ierr = VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr); 21393bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 2140387bc808SHong Zhang 2141387bc808SHong Zhang ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr); 21421ebc52fbSHong Zhang ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr); 2143778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr); 2144778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr); 21451ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr); 21461ebc52fbSHong Zhang ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr); 2147778a2246SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr); 21481ebc52fbSHong Zhang ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr); 21493bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0);CHKERRQ(ierr); 21503bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1);CHKERRQ(ierr); 21513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec0b);CHKERRQ(ierr); 21523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1a);CHKERRQ(ierr); 21533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->slvec1b);CHKERRQ(ierr); 2154387bc808SHong Zhang 2155387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 2156387bc808SHong Zhang ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr); 2157387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 21583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->sMvctx);CHKERRQ(ierr); 215982327fa8SHong Zhang 2160a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 21613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2162a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 21633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 2164140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 2165a30f8f8cSSatish Balay *newmat = mat; 2166a30f8f8cSSatish Balay PetscFunctionReturn(0); 2167a30f8f8cSSatish Balay } 2168a30f8f8cSSatish Balay 21694a2ae208SSatish Balay #undef __FUNCT__ 21705bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPISBAIJ" 2171112444f4SShri Abhyankar PetscErrorCode MatLoad_MPISBAIJ(Mat newmat,PetscViewer viewer) 217295936485SShri Abhyankar { 217395936485SShri Abhyankar PetscErrorCode ierr; 217495936485SShri Abhyankar PetscInt i,nz,j,rstart,rend; 217595936485SShri Abhyankar PetscScalar *vals,*buf; 2176ce94432eSBarry Smith MPI_Comm comm; 217795936485SShri Abhyankar MPI_Status status; 2178adcec1e5SJed Brown PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,mmbs; 2179adcec1e5SJed Brown PetscInt header[4],*rowlengths = 0,M,N,m,*cols,*locrowlens; 218095936485SShri Abhyankar PetscInt *procsnz = 0,jj,*mycols,*ibuf; 218195936485SShri Abhyankar PetscInt bs =1,Mbs,mbs,extra_rows; 218295936485SShri Abhyankar PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 218395936485SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,sizesset=1,grows,gcols; 218495936485SShri Abhyankar int fd; 218595936485SShri Abhyankar 218695936485SShri Abhyankar PetscFunctionBegin; 2187ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 21880298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr); 21890298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 219095936485SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 219195936485SShri Abhyankar 219295936485SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 219395936485SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 219495936485SShri Abhyankar if (!rank) { 219595936485SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 219695936485SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 219795936485SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 219895936485SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ"); 219995936485SShri Abhyankar } 220095936485SShri Abhyankar 220195936485SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 220295936485SShri Abhyankar 220395936485SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 220426fbe8dcSKarl Rupp M = header[1]; 220526fbe8dcSKarl Rupp N = header[2]; 220695936485SShri Abhyankar 220795936485SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 220895936485SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 220995936485SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 221095936485SShri Abhyankar 221195936485SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 221295936485SShri Abhyankar if (sizesset) { 221395936485SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 221495936485SShri Abhyankar } 2215abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 2216abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 221795936485SShri Abhyankar 221895936485SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 221995936485SShri Abhyankar 222095936485SShri Abhyankar /* 222195936485SShri Abhyankar This code adds extra rows to make sure the number of rows is 222295936485SShri Abhyankar divisible by the blocksize 222395936485SShri Abhyankar */ 222495936485SShri Abhyankar Mbs = M/bs; 222595936485SShri Abhyankar extra_rows = bs - M + bs*(Mbs); 222695936485SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 222795936485SShri Abhyankar else Mbs++; 222895936485SShri Abhyankar if (extra_rows &&!rank) { 222995936485SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 223095936485SShri Abhyankar } 223195936485SShri Abhyankar 223295936485SShri Abhyankar /* determine ownership of all rows */ 223395936485SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 223495936485SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 223595936485SShri Abhyankar m = mbs*bs; 223695936485SShri Abhyankar } else { /* User Set */ 223795936485SShri Abhyankar m = newmat->rmap->n; 223895936485SShri Abhyankar mbs = m/bs; 223995936485SShri Abhyankar } 224095936485SShri Abhyankar ierr = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr); 22414dc2109aSBarry Smith ierr = PetscMPIIntCast(mbs,&mmbs);CHKERRQ(ierr); 224295936485SShri Abhyankar ierr = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 224395936485SShri Abhyankar rowners[0] = 0; 224495936485SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 224595936485SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 224695936485SShri Abhyankar rstart = rowners[rank]; 224795936485SShri Abhyankar rend = rowners[rank+1]; 224895936485SShri Abhyankar 224995936485SShri Abhyankar /* distribute row lengths to all processors */ 2250adcec1e5SJed Brown ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 225195936485SShri Abhyankar if (!rank) { 225295936485SShri Abhyankar ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 225395936485SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 225495936485SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 225595936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 225695936485SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 225795936485SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 225895936485SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 225995936485SShri Abhyankar } else { 226095936485SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 226195936485SShri Abhyankar } 226295936485SShri Abhyankar 226395936485SShri Abhyankar if (!rank) { /* procs[0] */ 226495936485SShri Abhyankar /* calculate the number of nonzeros on each processor */ 226595936485SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 226695936485SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 226795936485SShri Abhyankar for (i=0; i<size; i++) { 226895936485SShri Abhyankar for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 226995936485SShri Abhyankar procsnz[i] += rowlengths[j]; 227095936485SShri Abhyankar } 227195936485SShri Abhyankar } 227295936485SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 227395936485SShri Abhyankar 227495936485SShri Abhyankar /* determine max buffer needed and allocate it */ 227595936485SShri Abhyankar maxnz = 0; 227695936485SShri Abhyankar for (i=0; i<size; i++) { 227795936485SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 227895936485SShri Abhyankar } 227995936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 228095936485SShri Abhyankar 228195936485SShri Abhyankar /* read in my part of the matrix column indices */ 228295936485SShri Abhyankar nz = procsnz[0]; 228395936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 228495936485SShri Abhyankar mycols = ibuf; 228595936485SShri Abhyankar if (size == 1) nz -= extra_rows; 228695936485SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 228726fbe8dcSKarl Rupp if (size == 1) { 228826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 228926fbe8dcSKarl Rupp } 229095936485SShri Abhyankar 229195936485SShri Abhyankar /* read in every ones (except the last) and ship off */ 229295936485SShri Abhyankar for (i=1; i<size-1; i++) { 229395936485SShri Abhyankar nz = procsnz[i]; 229495936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 229595936485SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 229695936485SShri Abhyankar } 229795936485SShri Abhyankar /* read in the stuff for the last proc */ 229895936485SShri Abhyankar if (size != 1) { 229995936485SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 230095936485SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 230195936485SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 230295936485SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 230395936485SShri Abhyankar } 230495936485SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 230595936485SShri Abhyankar } else { /* procs[i], i>0 */ 230695936485SShri Abhyankar /* determine buffer space needed for message */ 230795936485SShri Abhyankar nz = 0; 230826fbe8dcSKarl Rupp for (i=0; i<m; i++) nz += locrowlens[i]; 230995936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 231095936485SShri Abhyankar mycols = ibuf; 231195936485SShri Abhyankar /* receive message of column indices*/ 231295936485SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 231395936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 231495936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 231595936485SShri Abhyankar } 231695936485SShri Abhyankar 231795936485SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 231895936485SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 231995936485SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 232095936485SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232195936485SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232295936485SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 232395936485SShri Abhyankar rowcount = 0; 232495936485SShri Abhyankar nzcount = 0; 232595936485SShri Abhyankar for (i=0; i<mbs; i++) { 232695936485SShri Abhyankar dcount = 0; 232795936485SShri Abhyankar odcount = 0; 232895936485SShri Abhyankar for (j=0; j<bs; j++) { 232995936485SShri Abhyankar kmax = locrowlens[rowcount]; 233095936485SShri Abhyankar for (k=0; k<kmax; k++) { 233195936485SShri Abhyankar tmp = mycols[nzcount++]/bs; /* block col. index */ 233295936485SShri Abhyankar if (!mask[tmp]) { 233395936485SShri Abhyankar mask[tmp] = 1; 233495936485SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 233595936485SShri Abhyankar else masked1[dcount++] = tmp; /* entry in diag portion */ 233695936485SShri Abhyankar } 233795936485SShri Abhyankar } 233895936485SShri Abhyankar rowcount++; 233995936485SShri Abhyankar } 234095936485SShri Abhyankar 234195936485SShri Abhyankar dlens[i] = dcount; /* d_nzz[i] */ 234295936485SShri Abhyankar odlens[i] = odcount; /* o_nzz[i] */ 234395936485SShri Abhyankar 234495936485SShri Abhyankar /* zero out the mask elements we set */ 234595936485SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 234695936485SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 234795936485SShri Abhyankar } 234895936485SShri Abhyankar if (!sizesset) { 234995936485SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 235095936485SShri Abhyankar } 235195936485SShri Abhyankar ierr = MatMPISBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 23526816a49fSBarry Smith ierr = MatSetOption(newmat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 235395936485SShri Abhyankar 235495936485SShri Abhyankar if (!rank) { 235595936485SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 235695936485SShri Abhyankar /* read in my part of the matrix numerical values */ 235795936485SShri Abhyankar nz = procsnz[0]; 235895936485SShri Abhyankar vals = buf; 235995936485SShri Abhyankar mycols = ibuf; 236095936485SShri Abhyankar if (size == 1) nz -= extra_rows; 236195936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 236226fbe8dcSKarl Rupp if (size == 1) { 236326fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 236426fbe8dcSKarl Rupp } 236595936485SShri Abhyankar 236695936485SShri Abhyankar /* insert into matrix */ 236795936485SShri Abhyankar jj = rstart*bs; 236895936485SShri Abhyankar for (i=0; i<m; i++) { 236995936485SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 237095936485SShri Abhyankar mycols += locrowlens[i]; 237195936485SShri Abhyankar vals += locrowlens[i]; 237295936485SShri Abhyankar jj++; 237395936485SShri Abhyankar } 237495936485SShri Abhyankar 237595936485SShri Abhyankar /* read in other processors (except the last one) and ship out */ 237695936485SShri Abhyankar for (i=1; i<size-1; i++) { 237795936485SShri Abhyankar nz = procsnz[i]; 237895936485SShri Abhyankar vals = buf; 237995936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238095936485SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238195936485SShri Abhyankar } 238295936485SShri Abhyankar /* the last proc */ 238395936485SShri Abhyankar if (size != 1) { 238495936485SShri Abhyankar nz = procsnz[i] - extra_rows; 238595936485SShri Abhyankar vals = buf; 238695936485SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 238795936485SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 238895936485SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 238995936485SShri Abhyankar } 239095936485SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 239195936485SShri Abhyankar 239295936485SShri Abhyankar } else { 239395936485SShri Abhyankar /* receive numeric values */ 239495936485SShri Abhyankar ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 239595936485SShri Abhyankar 239695936485SShri Abhyankar /* receive message of values*/ 239795936485SShri Abhyankar vals = buf; 239895936485SShri Abhyankar mycols = ibuf; 239995936485SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 240095936485SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 240195936485SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 240295936485SShri Abhyankar 240395936485SShri Abhyankar /* insert into matrix */ 240495936485SShri Abhyankar jj = rstart*bs; 240595936485SShri Abhyankar for (i=0; i<m; i++) { 240695936485SShri Abhyankar ierr = MatSetValues_MPISBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 240795936485SShri Abhyankar mycols += locrowlens[i]; 240895936485SShri Abhyankar vals += locrowlens[i]; 240995936485SShri Abhyankar jj++; 241095936485SShri Abhyankar } 241195936485SShri Abhyankar } 241295936485SShri Abhyankar 241395936485SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 241495936485SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 241595936485SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 241695936485SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 241795936485SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 241895936485SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 241995936485SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242095936485SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242195936485SShri Abhyankar PetscFunctionReturn(0); 242295936485SShri Abhyankar } 242395936485SShri Abhyankar 242495936485SShri Abhyankar #undef __FUNCT__ 24254a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor" 2426dcf5cc72SBarry Smith /*XXXXX@ 2427a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2428a30f8f8cSSatish Balay 2429a30f8f8cSSatish Balay Input Parameters: 2430a30f8f8cSSatish Balay . mat - the matrix 2431a30f8f8cSSatish Balay . fact - factor 2432a30f8f8cSSatish Balay 2433c5eb9154SBarry Smith Not Collective on Mat, each process can have a different hash factor 2434a30f8f8cSSatish Balay 2435a30f8f8cSSatish Balay Level: advanced 2436a30f8f8cSSatish Balay 2437a30f8f8cSSatish Balay Notes: 2438a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2439a30f8f8cSSatish Balay 2440a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2441a30f8f8cSSatish Balay 2442a30f8f8cSSatish Balay .seealso: MatSetOption() 2443dcf5cc72SBarry Smith @XXXXX*/ 2444dcf5cc72SBarry Smith 244524d5174aSHong Zhang 24464a2ae208SSatish Balay #undef __FUNCT__ 2447985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ" 2448985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[]) 244924d5174aSHong Zhang { 245024d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 2451f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(a->B)->data; 2452ca54ac64SHong Zhang PetscReal atmp; 245387828ca2SBarry Smith PetscReal *work,*svalues,*rvalues; 2454dfbe8321SBarry Smith PetscErrorCode ierr; 24551302d50aSBarry Smith PetscInt i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol; 24561302d50aSBarry Smith PetscMPIInt rank,size; 24571302d50aSBarry Smith PetscInt *rowners_bs,dest,count,source; 245887828ca2SBarry Smith PetscScalar *va; 24598a1c53f2SBarry Smith MatScalar *ba; 2460f4c0e9e4SHong Zhang MPI_Status stat; 246124d5174aSHong Zhang 246224d5174aSHong Zhang PetscFunctionBegin; 2463e32f2f54SBarry Smith if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov"); 24640298fd71SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,NULL);CHKERRQ(ierr); 24651ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 2466f4c0e9e4SHong Zhang 2467ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2468ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2469f4c0e9e4SHong Zhang 2470d0f46423SBarry Smith bs = A->rmap->bs; 2471f4c0e9e4SHong Zhang mbs = a->mbs; 2472f4c0e9e4SHong Zhang Mbs = a->Mbs; 2473f4c0e9e4SHong Zhang ba = b->a; 2474f4c0e9e4SHong Zhang bi = b->i; 2475f4c0e9e4SHong Zhang bj = b->j; 2476f4c0e9e4SHong Zhang 2477f4c0e9e4SHong Zhang /* find ownerships */ 2478d0f46423SBarry Smith rowners_bs = A->rmap->range; 2479f4c0e9e4SHong Zhang 2480f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 248182502324SSatish Balay ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr); 2482ca54ac64SHong Zhang ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr); 2483f4c0e9e4SHong Zhang 2484f4c0e9e4SHong Zhang /* row_max for B */ 2485b8475685SHong Zhang if (rank != size-1) { 2486f4c0e9e4SHong Zhang for (i=0; i<mbs; i++) { 2487f4c0e9e4SHong Zhang ncols = bi[1] - bi[0]; bi++; 2488f4c0e9e4SHong Zhang brow = bs*i; 2489f4c0e9e4SHong Zhang for (j=0; j<ncols; j++) { 2490f4c0e9e4SHong Zhang bcol = bs*(*bj); 2491f4c0e9e4SHong Zhang for (kcol=0; kcol<bs; kcol++) { 2492ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 249304d41228SHong Zhang col += rowners_bs[rank+1]; /* global col index */ 2494f4c0e9e4SHong Zhang for (krow=0; krow<bs; krow++) { 2495f4c0e9e4SHong Zhang atmp = PetscAbsScalar(*ba); ba++; 2496ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2497ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2498f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2499f4c0e9e4SHong Zhang } 2500f4c0e9e4SHong Zhang } 2501f4c0e9e4SHong Zhang bj++; 2502f4c0e9e4SHong Zhang } 2503f4c0e9e4SHong Zhang } 2504f4c0e9e4SHong Zhang 2505f4c0e9e4SHong Zhang /* send values to its owners */ 2506f4c0e9e4SHong Zhang for (dest=rank+1; dest<size; dest++) { 2507f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2508ca54ac64SHong Zhang count = rowners_bs[dest+1]-rowners_bs[dest]; 2509ce94432eSBarry Smith ierr = MPI_Send(svalues,count,MPIU_REAL,dest,rank,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2510ca54ac64SHong Zhang } 2511f4c0e9e4SHong Zhang } 2512f4c0e9e4SHong Zhang 2513f4c0e9e4SHong Zhang /* receive values */ 2514ca54ac64SHong Zhang if (rank) { 2515f4c0e9e4SHong Zhang rvalues = work; 2516ca54ac64SHong Zhang count = rowners_bs[rank+1]-rowners_bs[rank]; 2517f4c0e9e4SHong Zhang for (source=0; source<rank; source++) { 2518ce94432eSBarry Smith ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,PetscObjectComm((PetscObject)A),&stat);CHKERRQ(ierr); 2519f4c0e9e4SHong Zhang /* process values */ 2520f4c0e9e4SHong Zhang for (i=0; i<count; i++) { 2521ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2522f4c0e9e4SHong Zhang } 2523f4c0e9e4SHong Zhang } 2524ca54ac64SHong Zhang } 2525f4c0e9e4SHong Zhang 25261ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 2527ac355199SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 252824d5174aSHong Zhang PetscFunctionReturn(0); 252924d5174aSHong Zhang } 25302798e883SHong Zhang 25312798e883SHong Zhang #undef __FUNCT__ 253241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ" 253341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 25342798e883SHong Zhang { 25352798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2536dfbe8321SBarry Smith PetscErrorCode ierr; 2537d0f46423SBarry Smith PetscInt mbs=mat->mbs,bs=matin->rmap->bs; 25383649974fSBarry Smith PetscScalar *x,*ptr,*from; 2539ffe4fb16SHong Zhang Vec bb1; 25403649974fSBarry Smith const PetscScalar *b; 2541ffe4fb16SHong Zhang 2542ffe4fb16SHong Zhang PetscFunctionBegin; 2543e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2544e32f2f54SBarry Smith if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 2545ffe4fb16SHong Zhang 2546a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 254741f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2548a2b30743SBarry Smith PetscFunctionReturn(0); 2549a2b30743SBarry Smith } 2550a2b30743SBarry Smith 2551ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2552ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 255341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 2554ffe4fb16SHong Zhang its--; 2555ffe4fb16SHong Zhang } 2556ffe4fb16SHong Zhang 2557ffe4fb16SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2558ffe4fb16SHong Zhang while (its--) { 2559ffe4fb16SHong Zhang 2560ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 2561ffe4fb16SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2562ffe4fb16SHong Zhang 2563ffe4fb16SHong Zhang /* copy xx into slvec0a */ 25641ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr); 25651ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2566ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25671ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr); 2568ffe4fb16SHong Zhang 2569efb30889SBarry Smith ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr); 2570ffe4fb16SHong Zhang 2571ffe4fb16SHong Zhang /* copy bb into slvec1a */ 25721ebc52fbSHong Zhang ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr); 25733649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 2574ffe4fb16SHong Zhang ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 25751ebc52fbSHong Zhang ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr); 2576ffe4fb16SHong Zhang 2577ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2578fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2579ffe4fb16SHong Zhang 2580ca9f406cSSatish Balay ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 25811ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2582a8b09249SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 2583ca9f406cSSatish Balay ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2584ffe4fb16SHong Zhang 2585ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 2586ffe4fb16SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr); 2587ffe4fb16SHong Zhang 2588ffe4fb16SHong Zhang /* local diagonal sweep */ 258941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 2590ffe4fb16SHong Zhang } 25916bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2592fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2594fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 259541f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2596fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2597fa22f6d0SBarry Smith Vec xx1; 2598ace3abfcSBarry Smith PetscBool hasop; 259920f1ed55SBarry Smith const PetscScalar *diag; 2600887ee2caSBarry Smith PetscScalar *sl,scale = (omega - 2.0)/omega; 260120f1ed55SBarry Smith PetscInt i,n; 2602fa22f6d0SBarry Smith 2603fa22f6d0SBarry Smith if (!mat->xx1) { 2604fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr); 2605fa22f6d0SBarry Smith ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr); 2606fa22f6d0SBarry Smith } 2607fa22f6d0SBarry Smith xx1 = mat->xx1; 2608fa22f6d0SBarry Smith bb1 = mat->bb1; 2609fa22f6d0SBarry Smith 261041f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr); 2611fa22f6d0SBarry Smith 2612fa22f6d0SBarry Smith if (!mat->diag) { 2613effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 26140298fd71SBarry Smith ierr = MatGetVecs(matin,&mat->diag,NULL);CHKERRQ(ierr); 2615fa22f6d0SBarry Smith ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr); 2616fa22f6d0SBarry Smith } 2617fa22f6d0SBarry Smith ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr); 2618fa22f6d0SBarry Smith 2619fa22f6d0SBarry Smith if (hasop) { 2620fa22f6d0SBarry Smith ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr); 2621887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262220f1ed55SBarry Smith } else { 262320f1ed55SBarry Smith /* 262420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 262520f1ed55SBarry Smith ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr); 2626887ee2caSBarry Smith ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr); 262720f1ed55SBarry Smith */ 262820f1ed55SBarry Smith ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26293649974fSBarry Smith ierr = VecGetArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26303649974fSBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 263120f1ed55SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 263220f1ed55SBarry Smith ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr); 2633887ee2caSBarry Smith if (omega == 1.0) { 263426fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] - diag[i]*x[i]; 263520f1ed55SBarry Smith ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr); 2636887ee2caSBarry Smith } else { 263726fbe8dcSKarl Rupp for (i=0; i<n; i++) sl[i] = b[i] + scale*diag[i]*x[i]; 2638887ee2caSBarry Smith ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr); 2639887ee2caSBarry Smith } 264020f1ed55SBarry Smith ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr); 26413649974fSBarry Smith ierr = VecRestoreArrayRead(mat->diag,&diag);CHKERRQ(ierr); 26423649974fSBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 264320f1ed55SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 264420f1ed55SBarry Smith } 2645fa22f6d0SBarry Smith 2646fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2647fa22f6d0SBarry Smith ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr); 2648fa22f6d0SBarry Smith ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr); 2649fa22f6d0SBarry Smith ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr); 2650fa22f6d0SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2651fa22f6d0SBarry Smith ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2652fa22f6d0SBarry Smith ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr); 2653fa22f6d0SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2654fa22f6d0SBarry Smith ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2655fa22f6d0SBarry Smith ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2656effcda25SBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr); 2657fa22f6d0SBarry Smith 2658fa22f6d0SBarry Smith /* local sweep */ 265941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr); 2660fa22f6d0SBarry Smith ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr); 2661f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 2662ffe4fb16SHong Zhang PetscFunctionReturn(0); 2663ffe4fb16SHong Zhang } 2664ffe4fb16SHong Zhang 2665ffe4fb16SHong Zhang #undef __FUNCT__ 266641f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm" 266741f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2668ffe4fb16SHong Zhang { 2669ffe4fb16SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 2670dfbe8321SBarry Smith PetscErrorCode ierr; 26712798e883SHong Zhang Vec lvec1,bb1; 26722798e883SHong Zhang 26732798e883SHong Zhang PetscFunctionBegin; 2674e32f2f54SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 2675e32f2f54SBarry Smith if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 26762798e883SHong Zhang 2677c14dc6b6SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 26782798e883SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 267941f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 26802798e883SHong Zhang its--; 26812798e883SHong Zhang } 26822798e883SHong Zhang 26832798e883SHong Zhang ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr); 26842798e883SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 26852798e883SHong Zhang while (its--) { 2686ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26872798e883SHong Zhang 26882798e883SHong Zhang /* lower diagonal part: bb1 = bb - B^T*xx */ 26892798e883SHong Zhang ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr); 2690efb30889SBarry Smith ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr); 26912798e883SHong Zhang 2692ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 26932798e883SHong Zhang ierr = VecCopy(bb,bb1);CHKERRQ(ierr); 2694ca9f406cSSatish Balay ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 26952798e883SHong Zhang 26962798e883SHong Zhang /* upper diagonal part: bb1 = bb1 - B*x */ 2697efb30889SBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 26982798e883SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr); 26992798e883SHong Zhang 2700ca9f406cSSatish Balay ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 27012798e883SHong Zhang 2702c14dc6b6SHong Zhang /* diagonal sweep */ 270341f059aeSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr); 27042798e883SHong Zhang } 27056bf464f9SBarry Smith ierr = VecDestroy(&lvec1);CHKERRQ(ierr); 27066bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 27076bf464f9SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format"); 27082798e883SHong Zhang PetscFunctionReturn(0); 27092798e883SHong Zhang } 27102798e883SHong Zhang 2711dfb205c3SBarry Smith #undef __FUNCT__ 2712dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPISBAIJWithArrays" 2713dfb205c3SBarry Smith /*@ 2714dfb205c3SBarry Smith MatCreateMPISBAIJWithArrays - creates a MPI SBAIJ matrix using arrays that contain in standard 2715dfb205c3SBarry Smith CSR format the local rows. 2716dfb205c3SBarry Smith 2717dfb205c3SBarry Smith Collective on MPI_Comm 2718dfb205c3SBarry Smith 2719dfb205c3SBarry Smith Input Parameters: 2720dfb205c3SBarry Smith + comm - MPI communicator 2721dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 2722dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 2723dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 2724dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2725dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 2726dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2727dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2728dfb205c3SBarry Smith . i - row indices 2729dfb205c3SBarry Smith . j - column indices 2730dfb205c3SBarry Smith - a - matrix values 2731dfb205c3SBarry Smith 2732dfb205c3SBarry Smith Output Parameter: 2733dfb205c3SBarry Smith . mat - the matrix 2734dfb205c3SBarry Smith 2735dfb205c3SBarry Smith Level: intermediate 2736dfb205c3SBarry Smith 2737dfb205c3SBarry Smith Notes: 2738dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 2739dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 2740dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 2741dfb205c3SBarry Smith 2742dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 2743dfb205c3SBarry Smith 2744dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2745dfb205c3SBarry Smith 2746dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 274769b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 2748dfb205c3SBarry Smith @*/ 27497087cfbeSBarry Smith PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 2750dfb205c3SBarry Smith { 2751dfb205c3SBarry Smith PetscErrorCode ierr; 2752dfb205c3SBarry Smith 2753dfb205c3SBarry Smith 2754dfb205c3SBarry Smith PetscFunctionBegin; 2755f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2756dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 2757dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2758dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 2759dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 2760dfb205c3SBarry Smith ierr = MatMPISBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 2761dfb205c3SBarry Smith PetscFunctionReturn(0); 2762dfb205c3SBarry Smith } 2763dfb205c3SBarry Smith 2764dfb205c3SBarry Smith 2765dfb205c3SBarry Smith #undef __FUNCT__ 2766dfb205c3SBarry Smith #define __FUNCT__ "MatMPISBAIJSetPreallocationCSR" 2767dfb205c3SBarry Smith /*@C 2768dfb205c3SBarry Smith MatMPISBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2769dfb205c3SBarry Smith (the default parallel PETSc format). 2770dfb205c3SBarry Smith 2771dfb205c3SBarry Smith Collective on MPI_Comm 2772dfb205c3SBarry Smith 2773dfb205c3SBarry Smith Input Parameters: 2774dfb205c3SBarry Smith + A - the matrix 2775dfb205c3SBarry Smith . bs - the block size 2776dfb205c3SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2777dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2778dfb205c3SBarry Smith - v - optional values in the matrix 2779dfb205c3SBarry Smith 2780dfb205c3SBarry Smith Level: developer 2781dfb205c3SBarry Smith 2782dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2783dfb205c3SBarry Smith 278469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ 2785dfb205c3SBarry Smith @*/ 27867087cfbeSBarry Smith PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2787dfb205c3SBarry Smith { 27884ac538c5SBarry Smith PetscErrorCode ierr; 2789dfb205c3SBarry Smith 2790dfb205c3SBarry Smith PetscFunctionBegin; 27914ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPISBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2792dfb205c3SBarry Smith PetscFunctionReturn(0); 2793dfb205c3SBarry Smith } 2794dfb205c3SBarry Smith 2795dfb205c3SBarry Smith 2796