xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision fc165ae29a2942928d845a189b25771de453dc0b)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
4a30f8f8cSSatish Balay #include "mpisbaij.h"
5a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
6a30f8f8cSSatish Balay 
7dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
101302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
111302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
171302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
18dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
20985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
211302d50aSBarry Smith EXTERN PetscErrorCode MatRelax_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
22a30f8f8cSSatish Balay 
23a30f8f8cSSatish Balay /*  UGLY, ugly, ugly
2487828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
25a30f8f8cSSatish Balay    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
26a30f8f8cSSatish Balay    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
27a30f8f8cSSatish Balay    converts the entries into single precision and then calls ..._MatScalar() to put them
28a30f8f8cSSatish Balay    into the single precision data structures.
29a30f8f8cSSatish Balay */
30a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
311302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
321302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
331302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
341302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
351302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
36a30f8f8cSSatish Balay #else
37a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar      MatSetValuesBlocked_SeqSBAIJ
38a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar             MatSetValues_MPISBAIJ
39a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar      MatSetValuesBlocked_MPISBAIJ
40a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar          MatSetValues_MPISBAIJ_HT
41a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar   MatSetValuesBlocked_MPISBAIJ_HT
42a30f8f8cSSatish Balay #endif
43a30f8f8cSSatish Balay 
44a30f8f8cSSatish Balay EXTERN_C_BEGIN
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
47be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
48a30f8f8cSSatish Balay {
49f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
51a30f8f8cSSatish Balay 
52a30f8f8cSSatish Balay   PetscFunctionBegin;
53a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
54a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
55a30f8f8cSSatish Balay   PetscFunctionReturn(0);
56a30f8f8cSSatish Balay }
57a30f8f8cSSatish Balay EXTERN_C_END
58a30f8f8cSSatish Balay 
59a30f8f8cSSatish Balay EXTERN_C_BEGIN
604a2ae208SSatish Balay #undef __FUNCT__
614a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
62be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
63a30f8f8cSSatish Balay {
64f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
65dfbe8321SBarry Smith   PetscErrorCode ierr;
66a30f8f8cSSatish Balay 
67a30f8f8cSSatish Balay   PetscFunctionBegin;
68a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
69a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
70a30f8f8cSSatish Balay   PetscFunctionReturn(0);
71a30f8f8cSSatish Balay }
72a30f8f8cSSatish Balay EXTERN_C_END
73a30f8f8cSSatish Balay 
74a30f8f8cSSatish Balay 
75a30f8f8cSSatish Balay #define CHUNKSIZE  10
76a30f8f8cSSatish Balay 
77a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
78a30f8f8cSSatish Balay { \
79a30f8f8cSSatish Balay  \
80a30f8f8cSSatish Balay     brow = row/bs;  \
81a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
82a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
83a30f8f8cSSatish Balay       bcol = col/bs; \
84a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
85a30f8f8cSSatish Balay       low = 0; high = nrow; \
86a30f8f8cSSatish Balay       while (high-low > 3) { \
87a30f8f8cSSatish Balay         t = (low+high)/2; \
88a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
89a30f8f8cSSatish Balay         else              low  = t; \
90a30f8f8cSSatish Balay       } \
91a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
92a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
93a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
94a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
95a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
96a30f8f8cSSatish Balay           else                    *bap  = value;  \
97a30f8f8cSSatish Balay           goto a_noinsert; \
98a30f8f8cSSatish Balay         } \
99a30f8f8cSSatish Balay       } \
100a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
101085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
102421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
103a30f8f8cSSatish Balay       N = nrow++ - 1;  \
104a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
105a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
106a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
107a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
108a30f8f8cSSatish Balay       } \
109a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
110a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
111a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
112a30f8f8cSSatish Balay       a_noinsert:; \
113a30f8f8cSSatish Balay     ailen[brow] = nrow; \
114a30f8f8cSSatish Balay }
115a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private
116a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
117a30f8f8cSSatish Balay { \
118a30f8f8cSSatish Balay     brow = row/bs;  \
119a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
120a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
121a30f8f8cSSatish Balay       bcol = col/bs; \
122a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
123a30f8f8cSSatish Balay       low = 0; high = nrow; \
124a30f8f8cSSatish Balay       while (high-low > 3) { \
125a30f8f8cSSatish Balay         t = (low+high)/2; \
126a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
127a30f8f8cSSatish Balay         else              low  = t; \
128a30f8f8cSSatish Balay       } \
129a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
130a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
131a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
132a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
133a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
134a30f8f8cSSatish Balay           else                    *bap  = value;  \
135a30f8f8cSSatish Balay           goto b_noinsert; \
136a30f8f8cSSatish Balay         } \
137a30f8f8cSSatish Balay       } \
138a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
139085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
140421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
141a30f8f8cSSatish Balay       N = nrow++ - 1;  \
142a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
143a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
144a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
145a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
146a30f8f8cSSatish Balay       } \
147a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
148a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
149a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
150a30f8f8cSSatish Balay       b_noinsert:; \
151a30f8f8cSSatish Balay     bilen[brow] = nrow; \
152a30f8f8cSSatish Balay }
153a30f8f8cSSatish Balay #endif
154a30f8f8cSSatish Balay 
155a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1564a2ae208SSatish Balay #undef __FUNCT__
1574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPISBAIJ"
1581302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
159a30f8f8cSSatish Balay {
160a30f8f8cSSatish Balay   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ*)mat->data;
161dfbe8321SBarry Smith   PetscErrorCode ierr;
1621302d50aSBarry Smith   PetscInt       i,N = m*n;
163a30f8f8cSSatish Balay   MatScalar      *vsingle;
164a30f8f8cSSatish Balay 
165a30f8f8cSSatish Balay   PetscFunctionBegin;
166a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
16705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
16882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
169a30f8f8cSSatish Balay     b->setvalueslen  = N;
170a30f8f8cSSatish Balay   }
171a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
172a30f8f8cSSatish Balay 
173a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
174a30f8f8cSSatish Balay     vsingle[i] = v[i];
175a30f8f8cSSatish Balay   }
176a30f8f8cSSatish Balay   ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
178a30f8f8cSSatish Balay }
179a30f8f8cSSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
1821302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
183a30f8f8cSSatish Balay {
184a30f8f8cSSatish Balay   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
1861302d50aSBarry Smith   PetscInt       i,N = m*n*b->bs2;
187a30f8f8cSSatish Balay   MatScalar      *vsingle;
188a30f8f8cSSatish Balay 
189a30f8f8cSSatish Balay   PetscFunctionBegin;
190a30f8f8cSSatish Balay   if (N > b->setvalueslen) {
19105b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
19282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
193a30f8f8cSSatish Balay     b->setvalueslen  = N;
194a30f8f8cSSatish Balay   }
195a30f8f8cSSatish Balay   vsingle = b->setvaluescopy;
196a30f8f8cSSatish Balay   for (i=0; i<N; i++) {
197a30f8f8cSSatish Balay     vsingle[i] = v[i];
198a30f8f8cSSatish Balay   }
199a30f8f8cSSatish Balay   ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
200a30f8f8cSSatish Balay   PetscFunctionReturn(0);
201a30f8f8cSSatish Balay }
202a30f8f8cSSatish Balay #endif
203a30f8f8cSSatish Balay 
204a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
205a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
206a30f8f8cSSatish Balay */
2074a2ae208SSatish Balay #undef __FUNCT__
208be583516SMatthew Knepley #define __FUNCT__ "MatSetValues_MPISBAIJ_MatScalar"
2091302d50aSBarry Smith PetscErrorCode MatSetValues_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
210a30f8f8cSSatish Balay {
211a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
212a30f8f8cSSatish Balay   MatScalar      value;
213b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
2151302d50aSBarry Smith   PetscInt       i,j,row,col;
216899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
217899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
218899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
219a30f8f8cSSatish Balay 
220a30f8f8cSSatish Balay   /* Some Variables required in the macro */
221a30f8f8cSSatish Balay   Mat            A = baij->A;
222a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
2231302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
224a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
225a30f8f8cSSatish Balay 
226a30f8f8cSSatish Balay   Mat            B = baij->B;
227a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
2281302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
229a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
230a30f8f8cSSatish Balay 
2311302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
2321302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
233a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
234a30f8f8cSSatish Balay 
235a30f8f8cSSatish Balay   /* for stash */
236910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
237910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
238a30f8f8cSSatish Balay 
239a30f8f8cSSatish Balay   PetscFunctionBegin;
240a30f8f8cSSatish Balay 
241a30f8f8cSSatish Balay   if (!baij->donotstash){
24259ffdab8SBarry Smith     if (n > baij->n_loc) {
24359ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
24459ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
24559ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
24659ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
24759ffdab8SBarry Smith       baij->n_loc = n;
24859ffdab8SBarry Smith     }
24959ffdab8SBarry Smith     in_loc = baij->in_loc;
25059ffdab8SBarry Smith     v_loc  = baij->v_loc;
251a30f8f8cSSatish Balay   }
252a30f8f8cSSatish Balay 
253a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
254a30f8f8cSSatish Balay     if (im[i] < 0) continue;
2552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
256899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
257a30f8f8cSSatish Balay #endif
258a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
259a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
260a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
26101b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
26201b2bd88SHong Zhang           if (a->ignore_ltriangular){
26301b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
26401b2bd88SHong Zhang           } else {
2654e0d8c25SBarry Smith             SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
26601b2bd88SHong Zhang           }
26701b2bd88SHong Zhang         }
268a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
269a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
270a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
271a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
272a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
273a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
274a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
275a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
277899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap.N-1);}
278a30f8f8cSSatish Balay #endif
279a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
280a30f8f8cSSatish Balay           if (mat->was_assembled) {
281a30f8f8cSSatish Balay             if (!baij->colmap) {
282653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
283a30f8f8cSSatish Balay             }
284a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
285a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
28671730473SSatish Balay             col  = col - 1;
287a30f8f8cSSatish Balay #else
28871730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
289a30f8f8cSSatish Balay #endif
290a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
291a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
292a30f8f8cSSatish Balay               col =  in[j];
293a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
294a30f8f8cSSatish Balay               B = baij->B;
295a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
296a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
297a30f8f8cSSatish Balay               ba=b->a;
29871730473SSatish Balay             } else col += in[j]%bs;
299a30f8f8cSSatish Balay           } else col = in[j];
300a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
301a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
302a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
303a30f8f8cSSatish Balay         }
304a30f8f8cSSatish Balay       }
305a30f8f8cSSatish Balay     } else {  /* off processor entry */
306a30f8f8cSSatish Balay       if (!baij->donotstash) {
307a30f8f8cSSatish Balay         n_loc = 0;
308a30f8f8cSSatish Balay         for (j=0; j<n; j++){
309f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
310a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
311a30f8f8cSSatish Balay           if (roworiented) {
312a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
313a30f8f8cSSatish Balay           } else {
314a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
315a30f8f8cSSatish Balay           }
316a30f8f8cSSatish Balay           n_loc++;
317a30f8f8cSSatish Balay         }
318a30f8f8cSSatish Balay         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr);
319a30f8f8cSSatish Balay       }
320a30f8f8cSSatish Balay     }
321a30f8f8cSSatish Balay   }
322a30f8f8cSSatish Balay   PetscFunctionReturn(0);
323a30f8f8cSSatish Balay }
324a30f8f8cSSatish Balay 
3254a2ae208SSatish Balay #undef __FUNCT__
326e03e44c9SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ_MatScalar"
3271302d50aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
328a30f8f8cSSatish Balay {
3290880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
330f15d580aSBarry Smith   const MatScalar *value;
331f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
3320880e062SHong Zhang   PetscTruth      roworiented = baij->roworiented;
333dfbe8321SBarry Smith   PetscErrorCode  ierr;
334899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
335899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
336899cda47SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap.bs,bs2=baij->bs2;
3370880e062SHong Zhang 
338a30f8f8cSSatish Balay   PetscFunctionBegin;
3390880e062SHong Zhang   if(!barray) {
3400880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
3410880e062SHong Zhang     baij->barray = barray;
3420880e062SHong Zhang   }
3430880e062SHong Zhang 
3440880e062SHong Zhang   if (roworiented) {
3450880e062SHong Zhang     stepval = (n-1)*bs;
3460880e062SHong Zhang   } else {
3470880e062SHong Zhang     stepval = (m-1)*bs;
3480880e062SHong Zhang   }
3490880e062SHong Zhang   for (i=0; i<m; i++) {
3500880e062SHong Zhang     if (im[i] < 0) continue;
3512515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
35277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
3530880e062SHong Zhang #endif
3540880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
3550880e062SHong Zhang       row = im[i] - rstart;
3560880e062SHong Zhang       for (j=0; j<n; j++) {
3570880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
3580880e062SHong Zhang         if ((roworiented) && (n == 1)) {
359f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
3600880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
361f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
3620880e062SHong Zhang         } else { /* Here a copy is required */
3630880e062SHong Zhang           if (roworiented) {
3640880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
3650880e062SHong Zhang           } else {
3660880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
3670880e062SHong Zhang           }
3680880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3690880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3700880e062SHong Zhang               *barray++  = *value++;
3710880e062SHong Zhang             }
3720880e062SHong Zhang           }
3730880e062SHong Zhang           barray -=bs2;
3740880e062SHong Zhang         }
3750880e062SHong Zhang 
3760880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3770880e062SHong Zhang           col  = in[j] - cstart;
3780880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3790880e062SHong Zhang         }
3800880e062SHong Zhang         else if (in[j] < 0) continue;
3812515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
38277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
3830880e062SHong Zhang #endif
3840880e062SHong Zhang         else {
3850880e062SHong Zhang           if (mat->was_assembled) {
3860880e062SHong Zhang             if (!baij->colmap) {
387653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3880880e062SHong Zhang             }
3890880e062SHong Zhang 
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3910880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3921302d50aSBarry Smith             { PetscInt data;
3930880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3940880e062SHong Zhang               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3950880e062SHong Zhang             }
3960880e062SHong Zhang #else
3970880e062SHong Zhang             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
3980880e062SHong Zhang #endif
3990880e062SHong Zhang #endif
4000880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
4010880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
4020880e062SHong Zhang             col  = (col - 1)/bs;
4030880e062SHong Zhang #else
4040880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
4050880e062SHong Zhang #endif
4060880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
4070880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
4080880e062SHong Zhang               col =  in[j];
4090880e062SHong Zhang             }
4100880e062SHong Zhang           }
4110880e062SHong Zhang           else col = in[j];
412e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
4130880e062SHong Zhang         }
4140880e062SHong Zhang       }
4150880e062SHong Zhang     } else {
4160880e062SHong Zhang       if (!baij->donotstash) {
4170880e062SHong Zhang         if (roworiented) {
4180880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4190880e062SHong Zhang         } else {
4200880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
4210880e062SHong Zhang         }
4220880e062SHong Zhang       }
4230880e062SHong Zhang     }
4240880e062SHong Zhang   }
4250880e062SHong Zhang   PetscFunctionReturn(0);
426a30f8f8cSSatish Balay }
427a30f8f8cSSatish Balay 
4284a2ae208SSatish Balay #undef __FUNCT__
4294a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
4301302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
431a30f8f8cSSatish Balay {
432f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
4336849ba73SBarry Smith   PetscErrorCode ierr;
434899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
435899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
436a30f8f8cSSatish Balay 
437a30f8f8cSSatish Balay   PetscFunctionBegin;
438a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
43997e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
440899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
441a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
442a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
443a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
44497e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
445899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
446a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
447a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
448c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
449a30f8f8cSSatish Balay         } else {
450a30f8f8cSSatish Balay           if (!baij->colmap) {
451653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
452a30f8f8cSSatish Balay           }
453a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
454a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
455a30f8f8cSSatish Balay           data --;
456a30f8f8cSSatish Balay #else
457a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
458a30f8f8cSSatish Balay #endif
459a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
460a30f8f8cSSatish Balay           else {
461a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
462e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
463a30f8f8cSSatish Balay           }
464a30f8f8cSSatish Balay         }
465a30f8f8cSSatish Balay       }
466a30f8f8cSSatish Balay     } else {
46729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
468a30f8f8cSSatish Balay     }
469a30f8f8cSSatish Balay   }
470a30f8f8cSSatish Balay  PetscFunctionReturn(0);
471a30f8f8cSSatish Balay }
472a30f8f8cSSatish Balay 
4734a2ae208SSatish Balay #undef __FUNCT__
4744a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
475dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
476a30f8f8cSSatish Balay {
477a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
480a30f8f8cSSatish Balay 
481a30f8f8cSSatish Balay   PetscFunctionBegin;
482a30f8f8cSSatish Balay   if (baij->size == 1) {
483a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
484a30f8f8cSSatish Balay   } else {
485a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
486f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
487a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
488a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
489a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
490a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
491d7d1e502SBarry Smith       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
492a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
493a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4940b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4950b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4960b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4970b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
498899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
499899cda47SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap.bs,row,grow,gcol,mbs=amat->mbs;
5000b8dc8d2SHong Zhang       MatScalar    *v;
5010b8dc8d2SHong Zhang 
502899cda47SBarry Smith       ierr  = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&rsum);CHKERRQ(ierr);
503899cda47SBarry Smith       rsum2 = rsum + mat->cmap.N;
504899cda47SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
5050b8dc8d2SHong Zhang       /* Amat */
5060b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
5070b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5080b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5090b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
5100b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5110b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
5120b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5130b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5140b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5150b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5160b8dc8d2SHong Zhang               /* non-diagonal block */
5170b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
5180b8dc8d2SHong Zhang             }
5190b8dc8d2SHong Zhang           }
5200b8dc8d2SHong Zhang         }
5210b8dc8d2SHong Zhang       }
5220b8dc8d2SHong Zhang       /* Bmat */
5230b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
5240b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
5250b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
5260b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
5270b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
5280b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
5290b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
5300b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
5310b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
5320b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
5330b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
5340b8dc8d2SHong Zhang             }
5350b8dc8d2SHong Zhang           }
5360b8dc8d2SHong Zhang         }
5370b8dc8d2SHong Zhang       }
538899cda47SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
5390b8dc8d2SHong Zhang       *norm = 0.0;
540899cda47SBarry Smith       for (col=0; col<mat->cmap.N; col++) {
5410b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
5420b8dc8d2SHong Zhang       }
5430b8dc8d2SHong Zhang       ierr = PetscFree(rsum);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     } else {
54529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
546a30f8f8cSSatish Balay     }
547a30f8f8cSSatish Balay   }
548a30f8f8cSSatish Balay   PetscFunctionReturn(0);
549a30f8f8cSSatish Balay }
550a30f8f8cSSatish Balay 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
553dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
554a30f8f8cSSatish Balay {
555a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
5571302d50aSBarry Smith   PetscInt       nstash,reallocs;
558a30f8f8cSSatish Balay   InsertMode     addv;
559a30f8f8cSSatish Balay 
560a30f8f8cSSatish Balay   PetscFunctionBegin;
561a30f8f8cSSatish Balay   if (baij->donotstash) {
562a30f8f8cSSatish Balay     PetscFunctionReturn(0);
563a30f8f8cSSatish Balay   }
564a30f8f8cSSatish Balay 
565a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
566a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
567a30f8f8cSSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
56829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
569a30f8f8cSSatish Balay   }
570a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
571a30f8f8cSSatish Balay 
5721e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
5731e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
574a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5751e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
576a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5771e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
578a30f8f8cSSatish Balay   PetscFunctionReturn(0);
579a30f8f8cSSatish Balay }
580a30f8f8cSSatish Balay 
5814a2ae208SSatish Balay #undef __FUNCT__
5824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
583dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
584a30f8f8cSSatish Balay {
585a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
586a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5876849ba73SBarry Smith   PetscErrorCode ierr;
58813f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
5891302d50aSBarry Smith   PetscInt       *row,*col,other_disassembled;
59013f74950SBarry Smith   PetscMPIInt    n;
591a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
592a30f8f8cSSatish Balay   MatScalar      *val;
593a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
594a30f8f8cSSatish Balay 
59591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
596a30f8f8cSSatish Balay   PetscFunctionBegin;
597a30f8f8cSSatish Balay 
598a30f8f8cSSatish Balay   if (!baij->donotstash) {
599a30f8f8cSSatish Balay     while (1) {
600a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
601a30f8f8cSSatish Balay       if (!flg) break;
602a30f8f8cSSatish Balay 
603a30f8f8cSSatish Balay       for (i=0; i<n;) {
604a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
605a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
606a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
607a30f8f8cSSatish Balay         else       ncols = n-i;
608a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
609a30f8f8cSSatish Balay         ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
610a30f8f8cSSatish Balay         i = j;
611a30f8f8cSSatish Balay       }
612a30f8f8cSSatish Balay     }
613a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
614a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
615a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
616a30f8f8cSSatish Balay        restore the original flags */
617a30f8f8cSSatish Balay     r1 = baij->roworiented;
618a30f8f8cSSatish Balay     r2 = a->roworiented;
61991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
620a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
621a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
62291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
623a30f8f8cSSatish Balay     while (1) {
624a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
625a30f8f8cSSatish Balay       if (!flg) break;
626a30f8f8cSSatish Balay 
627a30f8f8cSSatish Balay       for (i=0; i<n;) {
628a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
629a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
630a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
631a30f8f8cSSatish Balay         else       ncols = n-i;
632a30f8f8cSSatish Balay         ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
633a30f8f8cSSatish Balay         i = j;
634a30f8f8cSSatish Balay       }
635a30f8f8cSSatish Balay     }
636a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
637a30f8f8cSSatish Balay     baij->roworiented = r1;
638a30f8f8cSSatish Balay     a->roworiented    = r2;
63991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
643a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
644a30f8f8cSSatish Balay 
645a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
646a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
647a30f8f8cSSatish Balay   /*
648a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
649a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
650a30f8f8cSSatish Balay   */
651a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
652a30f8f8cSSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
653a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
654c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
655a30f8f8cSSatish Balay     }
656a30f8f8cSSatish Balay   }
657a30f8f8cSSatish Balay 
658a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
65940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
660a30f8f8cSSatish Balay   }
66191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
662a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
663a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
664a30f8f8cSSatish Balay 
665a30f8f8cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
666a30f8f8cSSatish Balay   baij->rowvalues = 0;
6675222a1afSHong Zhang 
668a30f8f8cSSatish Balay   PetscFunctionReturn(0);
669a30f8f8cSSatish Balay }
670a30f8f8cSSatish Balay 
671799bb49cSHong Zhang extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const MatScalar[],InsertMode);
6724a2ae208SSatish Balay #undef __FUNCT__
6734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6746849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
675a30f8f8cSSatish Balay {
676a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
677dfbe8321SBarry Smith   PetscErrorCode    ierr;
678899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
6791302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
68032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
681b0a32e0cSBarry Smith   PetscViewer       sviewer;
682f3ef73ceSBarry Smith   PetscViewerFormat format;
683a30f8f8cSSatish Balay 
684a30f8f8cSSatish Balay   PetscFunctionBegin;
68532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
686fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
68732077d6dSBarry Smith   if (iascii) {
688b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
689456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
690a30f8f8cSSatish Balay       MatInfo info;
691a30f8f8cSSatish Balay       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
692a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
69377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
694899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
695899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
696a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
69777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
698a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
69977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
700b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
70107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
702a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
703a30f8f8cSSatish Balay       PetscFunctionReturn(0);
704fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
70577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
706a30f8f8cSSatish Balay       PetscFunctionReturn(0);
707c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
708c1490034SHong Zhang       PetscFunctionReturn(0);
709a30f8f8cSSatish Balay     }
710a30f8f8cSSatish Balay   }
711a30f8f8cSSatish Balay 
712a30f8f8cSSatish Balay   if (isdraw) {
713b0a32e0cSBarry Smith     PetscDraw  draw;
714a30f8f8cSSatish Balay     PetscTruth isnull;
715b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
716b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
717a30f8f8cSSatish Balay   }
718a30f8f8cSSatish Balay 
719a30f8f8cSSatish Balay   if (size == 1) {
720e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
721a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
722a30f8f8cSSatish Balay   } else {
723a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
724a30f8f8cSSatish Balay     Mat          A;
72565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
72665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
727899cda47SBarry Smith     PetscInt     M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
728a30f8f8cSSatish Balay     MatScalar    *a;
729a30f8f8cSSatish Balay 
730f204ca49SKris Buschelman     /* Should this be the same type as mat? */
731f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
732a30f8f8cSSatish Balay     if (!rank) {
733f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
734a30f8f8cSSatish Balay     } else {
735f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
736a30f8f8cSSatish Balay     }
737f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
738899cda47SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
73952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
740a30f8f8cSSatish Balay 
741a30f8f8cSSatish Balay     /* copy over the A part */
74265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
743a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
7441302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
745a30f8f8cSSatish Balay 
746a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
747e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
748a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
749a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
750e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
751a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
752a30f8f8cSSatish Balay           ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
753a30f8f8cSSatish Balay           col++; a += bs;
754a30f8f8cSSatish Balay         }
755a30f8f8cSSatish Balay       }
756a30f8f8cSSatish Balay     }
757a30f8f8cSSatish Balay     /* copy over the B part */
75865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
75965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
760a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
761e9f7bc9eSHong Zhang 
762e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
763a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
764a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
765a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
766a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
767799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
768a30f8f8cSSatish Balay           col++; a += bs;
769a30f8f8cSSatish Balay         }
770a30f8f8cSSatish Balay       }
771a30f8f8cSSatish Balay     }
772a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
773a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
774a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
775a30f8f8cSSatish Balay     /*
776a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
777b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
778a30f8f8cSSatish Balay     */
779b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
78065d70643SHong Zhang     if (!rank) {
781e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
782a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
783a30f8f8cSSatish Balay     }
784b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
785a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
786a30f8f8cSSatish Balay   }
787a30f8f8cSSatish Balay   PetscFunctionReturn(0);
788a30f8f8cSSatish Balay }
789a30f8f8cSSatish Balay 
7904a2ae208SSatish Balay #undef __FUNCT__
7914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
792dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
793a30f8f8cSSatish Balay {
794dfbe8321SBarry Smith   PetscErrorCode ierr;
79532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
796a30f8f8cSSatish Balay 
797a30f8f8cSSatish Balay   PetscFunctionBegin;
79832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
799fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
800b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
801fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
80232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
803a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
804a30f8f8cSSatish Balay   } else {
8051302d50aSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
806a30f8f8cSSatish Balay   }
807a30f8f8cSSatish Balay   PetscFunctionReturn(0);
808a30f8f8cSSatish Balay }
809a30f8f8cSSatish Balay 
8104a2ae208SSatish Balay #undef __FUNCT__
8114a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
812dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
813a30f8f8cSSatish Balay {
814a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
815dfbe8321SBarry Smith   PetscErrorCode ierr;
816a30f8f8cSSatish Balay 
817a30f8f8cSSatish Balay   PetscFunctionBegin;
818a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
819899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
820a30f8f8cSSatish Balay #endif
821a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
822a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
823a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
824a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
825a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
8269c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
827a30f8f8cSSatish Balay #else
82805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
829a30f8f8cSSatish Balay #endif
83005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
831a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
832a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
83340781036SHong Zhang   if (baij->slvec0) {
83440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
83540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
83640781036SHong Zhang   }
83740781036SHong Zhang   if (baij->slvec1) {
83840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
83940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
84040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
84140781036SHong Zhang   }
84240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
84305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
84405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
84505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
846a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
84705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
848a30f8f8cSSatish Balay #endif
84959ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
85059ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
851899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
852a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
853901853e0SKris Buschelman 
854dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
855901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
856901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
857901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
858901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
859a30f8f8cSSatish Balay   PetscFunctionReturn(0);
860a30f8f8cSSatish Balay }
861a30f8f8cSSatish Balay 
8624a2ae208SSatish Balay #undef __FUNCT__
863a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
864dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
865a9d4b620SHong Zhang {
866a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
867dfbe8321SBarry Smith   PetscErrorCode ierr;
868899cda47SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap.bs;
869a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
870a9d4b620SHong Zhang 
871a9d4b620SHong Zhang   PetscFunctionBegin;
872a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
873899cda47SBarry Smith   if (nt != A->cmap.n) {
874a9d4b620SHong Zhang     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
875a9d4b620SHong Zhang   }
876a9d4b620SHong Zhang 
877a9d4b620SHong Zhang   /* diagonal part */
878a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
8792dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
880a9d4b620SHong Zhang 
881a9d4b620SHong Zhang   /* subdiagonal part */
882a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
883*fc165ae2SBarry Smith 
884a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8851ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8861ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
887a9d4b620SHong Zhang 
888*fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
889*fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8901ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
891*fc165ae2SBarry Smith 
892*fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
893ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
894a9d4b620SHong Zhang   /* supperdiagonal part */
895a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
896a9d4b620SHong Zhang   PetscFunctionReturn(0);
897a9d4b620SHong Zhang }
898a9d4b620SHong Zhang 
899a9d4b620SHong Zhang #undef __FUNCT__
90040781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
901dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
902a30f8f8cSSatish Balay {
903a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
904dfbe8321SBarry Smith   PetscErrorCode ierr;
9051302d50aSBarry Smith   PetscInt       nt;
906a30f8f8cSSatish Balay 
907a30f8f8cSSatish Balay   PetscFunctionBegin;
908a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
909899cda47SBarry Smith   if (nt != A->cmap.n) {
91029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
911a30f8f8cSSatish Balay   }
912a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
913899cda47SBarry Smith   if (nt != A->rmap.N) {
91429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
915a30f8f8cSSatish Balay   }
91665d70643SHong Zhang 
917ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
918b941877fSHong Zhang   /* do diagonal part */
919b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
920b941877fSHong Zhang   /* do supperdiagonal part */
921ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
922b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
923b941877fSHong Zhang   /* do subdiagonal part */
924b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
925ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
926ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
92765d70643SHong Zhang 
928a30f8f8cSSatish Balay   PetscFunctionReturn(0);
929a30f8f8cSSatish Balay }
930a30f8f8cSSatish Balay 
9314a2ae208SSatish Balay #undef __FUNCT__
9324a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
933dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
934a30f8f8cSSatish Balay {
935de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
936dfbe8321SBarry Smith   PetscErrorCode ierr;
937899cda47SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap.bs;
938a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
939a9d4b620SHong Zhang 
940a9d4b620SHong Zhang   PetscFunctionBegin;
941a9d4b620SHong Zhang   /*
94256faa61eSBarry Smith   PetscSynchronizedPrintf(A->comm," MatMultAdd is called ...\n");
94356faa61eSBarry Smith   PetscSynchronizedFlush(A->comm);
944a9d4b620SHong Zhang   */
945a9d4b620SHong Zhang   /* diagonal part */
946a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9472dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
948a9d4b620SHong Zhang 
949a9d4b620SHong Zhang   /* subdiagonal part */
950a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
951a9d4b620SHong Zhang 
952a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9531ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
955a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9561ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
957a9d4b620SHong Zhang 
958ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9591ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
960ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
961a9d4b620SHong Zhang 
962a9d4b620SHong Zhang   /* supperdiagonal part */
963a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
964a9d4b620SHong Zhang 
965a9d4b620SHong Zhang   PetscFunctionReturn(0);
966a9d4b620SHong Zhang }
967a9d4b620SHong Zhang 
968a9d4b620SHong Zhang #undef __FUNCT__
969a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
970dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
971a9d4b620SHong Zhang {
972a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
973dfbe8321SBarry Smith   PetscErrorCode ierr;
974a30f8f8cSSatish Balay 
975a30f8f8cSSatish Balay   PetscFunctionBegin;
976ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
977b941877fSHong Zhang   /* do diagonal part */
978b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
979b941877fSHong Zhang   /* do supperdiagonal part */
980ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
981de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
982de8b6608SHong Zhang 
983b941877fSHong Zhang   /* do subdiagonal part */
984a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
985ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
986ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
987aa482183SHong Zhang 
988a30f8f8cSSatish Balay   PetscFunctionReturn(0);
989a30f8f8cSSatish Balay }
990a30f8f8cSSatish Balay 
991a30f8f8cSSatish Balay /*
992a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
993a30f8f8cSSatish Balay    diagonal block
994a30f8f8cSSatish Balay */
9954a2ae208SSatish Balay #undef __FUNCT__
9964a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
997dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
998a30f8f8cSSatish Balay {
999a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1000dfbe8321SBarry Smith   PetscErrorCode ierr;
1001a30f8f8cSSatish Balay 
1002a30f8f8cSSatish Balay   PetscFunctionBegin;
1003899cda47SBarry Smith   /* if (a->rmap.N != a->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
1004a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
1005a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1006a30f8f8cSSatish Balay }
1007a30f8f8cSSatish Balay 
10084a2ae208SSatish Balay #undef __FUNCT__
10094a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
1010f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
1011a30f8f8cSSatish Balay {
1012a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1013dfbe8321SBarry Smith   PetscErrorCode ierr;
1014a30f8f8cSSatish Balay 
1015a30f8f8cSSatish Balay   PetscFunctionBegin;
1016f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1017f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
1018a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1019a30f8f8cSSatish Balay }
1020a30f8f8cSSatish Balay 
10214a2ae208SSatish Balay #undef __FUNCT__
10224a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
10231302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1024a30f8f8cSSatish Balay {
1025d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
1026d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
1027d0d4cfc2SHong Zhang   PetscErrorCode ierr;
1028899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1029899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1030899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
1031d0d4cfc2SHong Zhang 
1032a30f8f8cSSatish Balay   PetscFunctionBegin;
1033d0d4cfc2SHong Zhang   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1034d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1035d0d4cfc2SHong Zhang 
1036d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1037d0d4cfc2SHong Zhang     /*
1038d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1039d0d4cfc2SHong Zhang     */
1040d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1041d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1042d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1043d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1044d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1045d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1046d0d4cfc2SHong Zhang     }
1047d0d4cfc2SHong Zhang     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1048d0d4cfc2SHong Zhang     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1049d0d4cfc2SHong Zhang   }
1050d0d4cfc2SHong Zhang 
1051d0d4cfc2SHong Zhang   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1052d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1053d0d4cfc2SHong Zhang 
1054d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1055d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1056d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1057d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1058d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1059d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1060d0d4cfc2SHong Zhang 
1061d0d4cfc2SHong Zhang   cmap  = mat->garray;
1062d0d4cfc2SHong Zhang   if (v  || idx) {
1063d0d4cfc2SHong Zhang     if (nztot) {
1064d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1065d0d4cfc2SHong Zhang       PetscInt imark = -1;
1066d0d4cfc2SHong Zhang       if (v) {
1067d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1068d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1069d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1070d0d4cfc2SHong Zhang           else break;
1071d0d4cfc2SHong Zhang         }
1072d0d4cfc2SHong Zhang         imark = i;
1073d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1074d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1075d0d4cfc2SHong Zhang       }
1076d0d4cfc2SHong Zhang       if (idx) {
1077d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1078d0d4cfc2SHong Zhang         if (imark > -1) {
1079d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1080d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1081d0d4cfc2SHong Zhang           }
1082d0d4cfc2SHong Zhang         } else {
1083d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1084d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1085d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1086d0d4cfc2SHong Zhang             else break;
1087d0d4cfc2SHong Zhang           }
1088d0d4cfc2SHong Zhang           imark = i;
1089d0d4cfc2SHong Zhang         }
1090d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1091d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1092d0d4cfc2SHong Zhang       }
1093d0d4cfc2SHong Zhang     } else {
1094d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1095d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1096d0d4cfc2SHong Zhang     }
1097d0d4cfc2SHong Zhang   }
1098d0d4cfc2SHong Zhang   *nz = nztot;
1099d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1100d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1101a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1102a30f8f8cSSatish Balay }
1103a30f8f8cSSatish Balay 
11044a2ae208SSatish Balay #undef __FUNCT__
11054a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
11061302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1107a30f8f8cSSatish Balay {
1108a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1109a30f8f8cSSatish Balay 
1110a30f8f8cSSatish Balay   PetscFunctionBegin;
1111abc0a331SBarry Smith   if (!baij->getrowactive) {
1112abc0a331SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1113a30f8f8cSSatish Balay   }
1114a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1115a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1116a30f8f8cSSatish Balay }
1117a30f8f8cSSatish Balay 
11184a2ae208SSatish Balay #undef __FUNCT__
1119d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1120d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1121d0d4cfc2SHong Zhang {
1122d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1123d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1124d0d4cfc2SHong Zhang 
1125d0d4cfc2SHong Zhang   PetscFunctionBegin;
1126d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1127d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1128d0d4cfc2SHong Zhang }
1129d0d4cfc2SHong Zhang #undef __FUNCT__
1130d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1131d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1132d0d4cfc2SHong Zhang {
1133d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1134d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1135d0d4cfc2SHong Zhang 
1136d0d4cfc2SHong Zhang   PetscFunctionBegin;
1137d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1138d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1139d0d4cfc2SHong Zhang }
1140d0d4cfc2SHong Zhang 
1141d0d4cfc2SHong Zhang #undef __FUNCT__
114299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
114399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
114499cafbc1SBarry Smith {
114599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
114699cafbc1SBarry Smith   PetscErrorCode ierr;
114799cafbc1SBarry Smith 
114899cafbc1SBarry Smith   PetscFunctionBegin;
114999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
115099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
115199cafbc1SBarry Smith   PetscFunctionReturn(0);
115299cafbc1SBarry Smith }
115399cafbc1SBarry Smith 
115499cafbc1SBarry Smith #undef __FUNCT__
115599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
115699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
115799cafbc1SBarry Smith {
115899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
115999cafbc1SBarry Smith   PetscErrorCode ierr;
116099cafbc1SBarry Smith 
116199cafbc1SBarry Smith   PetscFunctionBegin;
116299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
116399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
116499cafbc1SBarry Smith   PetscFunctionReturn(0);
116599cafbc1SBarry Smith }
116699cafbc1SBarry Smith 
116799cafbc1SBarry Smith #undef __FUNCT__
11684a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1169dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1170a30f8f8cSSatish Balay {
1171a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1172dfbe8321SBarry Smith   PetscErrorCode ierr;
1173a30f8f8cSSatish Balay 
1174a30f8f8cSSatish Balay   PetscFunctionBegin;
1175a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1176a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1177a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1178a30f8f8cSSatish Balay }
1179a30f8f8cSSatish Balay 
11804a2ae208SSatish Balay #undef __FUNCT__
11814a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1182dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1183a30f8f8cSSatish Balay {
1184a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1185a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1186dfbe8321SBarry Smith   PetscErrorCode ierr;
1187a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1188a30f8f8cSSatish Balay 
1189a30f8f8cSSatish Balay   PetscFunctionBegin;
1190899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
1191a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1192a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1193a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1194a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1195a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1196a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1197a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1198a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1199a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1200a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1201a30f8f8cSSatish Balay     info->memory       = isend[3];
1202a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1203a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1204d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
1205a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1206a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1207a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1208a30f8f8cSSatish Balay     info->memory       = irecv[3];
1209a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1210a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1211d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
1212a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1213a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1214a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1215a30f8f8cSSatish Balay     info->memory       = irecv[3];
1216a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1217a30f8f8cSSatish Balay   } else {
121877431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1219a30f8f8cSSatish Balay   }
1220899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1221899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1222899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1223899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
1224a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1225a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1226a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1227a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1228a30f8f8cSSatish Balay }
1229a30f8f8cSSatish Balay 
12304a2ae208SSatish Balay #undef __FUNCT__
12314a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
12324e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1233a30f8f8cSSatish Balay {
1234a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1235d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1236dfbe8321SBarry Smith   PetscErrorCode ierr;
1237a30f8f8cSSatish Balay 
1238a30f8f8cSSatish Balay   PetscFunctionBegin;
1239e98b92d7SKris Buschelman   switch (op) {
1240512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1241e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1242e98b92d7SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1243e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12444e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12454e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1246e98b92d7SKris Buschelman     break;
1247e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12484e0d8c25SBarry Smith     a->roworiented = flg;
12494e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12504e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1251e98b92d7SKris Buschelman     break;
12524e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1253290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1254e98b92d7SKris Buschelman     break;
1255e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12564e0d8c25SBarry Smith     a->donotstash = flg;
1257e98b92d7SKris Buschelman     break;
1258e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12594e0d8c25SBarry Smith     a->ht_flag = flg;
1260e98b92d7SKris Buschelman     break;
12619a4540c5SBarry Smith   case MAT_HERMITIAN:
12624e0d8c25SBarry Smith     if (flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
126377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
126477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12659a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12664e0d8c25SBarry Smith     if (!flg) SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
1267290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
126877e54ba9SKris Buschelman     break;
1269d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12704e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1271d0d4cfc2SHong Zhang     break;
1272d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12734e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1274d0d4cfc2SHong Zhang     break;
1275d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12764e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1277d0d4cfc2SHong Zhang     break;
1278e98b92d7SKris Buschelman   default:
1279ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1280a30f8f8cSSatish Balay   }
1281a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1282a30f8f8cSSatish Balay }
1283a30f8f8cSSatish Balay 
12844a2ae208SSatish Balay #undef __FUNCT__
12858115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1286dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,Mat *B)
1287a30f8f8cSSatish Balay {
1288dfbe8321SBarry Smith   PetscErrorCode ierr;
1289a30f8f8cSSatish Balay   PetscFunctionBegin;
1290999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
12918115998fSBarry Smith   PetscFunctionReturn(0);
1292a30f8f8cSSatish Balay }
1293a30f8f8cSSatish Balay 
12944a2ae208SSatish Balay #undef __FUNCT__
12954a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1296dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1297a30f8f8cSSatish Balay {
1298a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1299a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1300dfbe8321SBarry Smith   PetscErrorCode ierr;
13015e90f9d9SHong Zhang   PetscInt       nv,m,n;
1302b3bf805bSHong Zhang   PetscTruth     flg;
1303a30f8f8cSSatish Balay 
1304a30f8f8cSSatish Balay   PetscFunctionBegin;
1305a30f8f8cSSatish Balay   if (ll != rr){
1306b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1307b3bf805bSHong Zhang     if (!flg)
130829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1309a30f8f8cSSatish Balay   }
1310b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1311b3bf805bSHong Zhang 
13125e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
13135e90f9d9SHong Zhang   if (m != n) SETERRQ2(PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1314b3bf805bSHong Zhang 
13155e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
13165e90f9d9SHong Zhang   if (nv!=n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
13175e90f9d9SHong Zhang 
1318ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13195e90f9d9SHong Zhang 
13205e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1321a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
13225e90f9d9SHong Zhang 
13235e90f9d9SHong Zhang   /* scale the diagonal part */
1324a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1325a30f8f8cSSatish Balay 
13265e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1327ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1328a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1330a30f8f8cSSatish Balay }
1331a30f8f8cSSatish Balay 
13324a2ae208SSatish Balay #undef __FUNCT__
13334a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1334dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1335a30f8f8cSSatish Balay {
1336f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1337dfbe8321SBarry Smith   PetscErrorCode ierr;
1338a30f8f8cSSatish Balay 
1339a30f8f8cSSatish Balay   PetscFunctionBegin;
1340a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1341a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1342a30f8f8cSSatish Balay }
1343a30f8f8cSSatish Balay 
13446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1345a30f8f8cSSatish Balay 
13464a2ae208SSatish Balay #undef __FUNCT__
13474a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1348dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1349a30f8f8cSSatish Balay {
1350a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1351a30f8f8cSSatish Balay   Mat            a,b,c,d;
1352a30f8f8cSSatish Balay   PetscTruth     flg;
1353dfbe8321SBarry Smith   PetscErrorCode ierr;
1354a30f8f8cSSatish Balay 
1355a30f8f8cSSatish Balay   PetscFunctionBegin;
1356a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1357a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1358a30f8f8cSSatish Balay 
1359a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1360abc0a331SBarry Smith   if (flg) {
1361a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1362a30f8f8cSSatish Balay   }
1363a30f8f8cSSatish Balay   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
1364a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1365a30f8f8cSSatish Balay }
1366a30f8f8cSSatish Balay 
13674a2ae208SSatish Balay #undef __FUNCT__
13683c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13693c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13703c896bc6SHong Zhang {
13713c896bc6SHong Zhang   PetscErrorCode ierr;
13723c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13733c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13743c896bc6SHong Zhang 
13753c896bc6SHong Zhang   PetscFunctionBegin;
13763c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13773c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1378d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13793c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1380d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13813c896bc6SHong Zhang   } else {
13823c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13833c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13843c896bc6SHong Zhang   }
13853c896bc6SHong Zhang   PetscFunctionReturn(0);
13863c896bc6SHong Zhang }
13873c896bc6SHong Zhang 
13883c896bc6SHong Zhang #undef __FUNCT__
13894a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1390dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1391273d9f13SBarry Smith {
1392dfbe8321SBarry Smith   PetscErrorCode ierr;
1393273d9f13SBarry Smith 
1394273d9f13SBarry Smith   PetscFunctionBegin;
13957edd0491SSatish Balay   ierr = MatMPISBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1396273d9f13SBarry Smith   PetscFunctionReturn(0);
1397273d9f13SBarry Smith }
1398a5e6ed63SBarry Smith 
13994fe895cdSHong Zhang #include "petscblaslapack.h"
14004fe895cdSHong Zhang #undef __FUNCT__
14014fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
14024fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
14034fe895cdSHong Zhang {
14044fe895cdSHong Zhang   PetscErrorCode ierr;
14054fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
14064fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
14074fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
14084fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
14094fe895cdSHong Zhang 
14104fe895cdSHong Zhang   PetscFunctionBegin;
14114fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
14124fe895cdSHong Zhang     PetscScalar alpha = a;
14134fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
14144fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
14154fe895cdSHong Zhang     bnz = (PetscBLASInt)xa->nz;
14164fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
14174fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
14184fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
14194fe895cdSHong Zhang     bnz = (PetscBLASInt)xb->nz;
14204fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
14214fe895cdSHong Zhang   } else {
1422d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
14234fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1424d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
14254fe895cdSHong Zhang   }
14264fe895cdSHong Zhang   PetscFunctionReturn(0);
14274fe895cdSHong Zhang }
14284fe895cdSHong Zhang 
1429a5e6ed63SBarry Smith #undef __FUNCT__
1430a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14311302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1432a5e6ed63SBarry Smith {
14336849ba73SBarry Smith   PetscErrorCode ierr;
14341302d50aSBarry Smith   PetscInt       i;
1435a5e6ed63SBarry Smith   PetscTruth     flg;
1436a5e6ed63SBarry Smith 
14376849ba73SBarry Smith   PetscFunctionBegin;
1438a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1439a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1440a5e6ed63SBarry Smith     if (!flg) {
14411302d50aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1442a5e6ed63SBarry Smith     }
1443a5e6ed63SBarry Smith   }
1444a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1445a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1446a5e6ed63SBarry Smith }
1447a5e6ed63SBarry Smith 
1448a5e6ed63SBarry Smith 
1449a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1450a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1451a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1452a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1453a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1454a9d4b620SHong Zhang        MatMult_MPISBAIJ,
145597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1456431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1457431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
1460a30f8f8cSSatish Balay        0,
146197304618SKris Buschelman /*10*/ 0,
1462a30f8f8cSSatish Balay        0,
1463a30f8f8cSSatish Balay        0,
14642798e883SHong Zhang        MatRelax_MPISBAIJ,
1465a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
146697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1467a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1468a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1469a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1470a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
147197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1472a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1473a30f8f8cSSatish Balay        0,
1474a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1475a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1476dcf5cc72SBarry Smith /*25*/ 0,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
1480a30f8f8cSSatish Balay        0,
148197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPISBAIJ,
1482b5df2d14SHong Zhang        0,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485a30f8f8cSSatish Balay        0,
148697304618SKris Buschelman /*35*/ MatDuplicate_MPISBAIJ,
1487a30f8f8cSSatish Balay        0,
1488a30f8f8cSSatish Balay        0,
1489a30f8f8cSSatish Balay        0,
1490a30f8f8cSSatish Balay        0,
14914fe895cdSHong Zhang /*40*/ MatAXPY_MPISBAIJ,
1492a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1493d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1494a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14953c896bc6SHong Zhang        MatCopy_MPISBAIJ,
14968c07d4e3SBarry Smith /*45*/ 0,
1497a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1498a30f8f8cSSatish Balay        0,
1499a30f8f8cSSatish Balay        0,
1500a30f8f8cSSatish Balay        0,
1501521d7252SBarry Smith /*50*/ 0,
1502a30f8f8cSSatish Balay        0,
1503a30f8f8cSSatish Balay        0,
1504a30f8f8cSSatish Balay        0,
1505a30f8f8cSSatish Balay        0,
150697304618SKris Buschelman /*55*/ 0,
1507a30f8f8cSSatish Balay        0,
1508a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1509a30f8f8cSSatish Balay        0,
1510a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
151197304618SKris Buschelman /*60*/ 0,
1512a30f8f8cSSatish Balay        0,
1513a30f8f8cSSatish Balay        0,
1514357abbc8SBarry Smith        0,
151524d5174aSHong Zhang        0,
151697304618SKris Buschelman /*65*/ 0,
151724d5174aSHong Zhang        0,
151824d5174aSHong Zhang        0,
151924d5174aSHong Zhang        0,
152024d5174aSHong Zhang        0,
1521985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPISBAIJ,
152224d5174aSHong Zhang        0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
152597304618SKris Buschelman        0,
152697304618SKris Buschelman /*75*/ 0,
152797304618SKris Buschelman        0,
152897304618SKris Buschelman        0,
152997304618SKris Buschelman        0,
153097304618SKris Buschelman        0,
153197304618SKris Buschelman /*80*/ 0,
153297304618SKris Buschelman        0,
153397304618SKris Buschelman        0,
153497304618SKris Buschelman        0,
1535865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1536865e5f61SKris Buschelman /*85*/ 0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0,
1540865e5f61SKris Buschelman        0,
1541865e5f61SKris Buschelman /*90*/ 0,
1542865e5f61SKris Buschelman        0,
1543865e5f61SKris Buschelman        0,
1544865e5f61SKris Buschelman        0,
1545865e5f61SKris Buschelman        0,
1546865e5f61SKris Buschelman /*95*/ 0,
1547865e5f61SKris Buschelman        0,
1548865e5f61SKris Buschelman        0,
154999cafbc1SBarry Smith        0,
155099cafbc1SBarry Smith        0,
155199cafbc1SBarry Smith /*100*/0,
155299cafbc1SBarry Smith        0,
155399cafbc1SBarry Smith        0,
155499cafbc1SBarry Smith        0,
155599cafbc1SBarry Smith        0,
155699cafbc1SBarry Smith /*105*/0,
155799cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1558d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1559d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1560d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
156199cafbc1SBarry Smith };
1562a30f8f8cSSatish Balay 
1563a30f8f8cSSatish Balay 
1564a30f8f8cSSatish Balay EXTERN_C_BEGIN
15654a2ae208SSatish Balay #undef __FUNCT__
15664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1567be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1568a30f8f8cSSatish Balay {
1569a30f8f8cSSatish Balay   PetscFunctionBegin;
1570a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1571a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1572a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1573a30f8f8cSSatish Balay }
1574a30f8f8cSSatish Balay EXTERN_C_END
1575a30f8f8cSSatish Balay 
1576273d9f13SBarry Smith EXTERN_C_BEGIN
15774a2ae208SSatish Balay #undef __FUNCT__
1578a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1579be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1580a23d5eceSKris Buschelman {
1581a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1582dfbe8321SBarry Smith   PetscErrorCode ierr;
15831302d50aSBarry Smith   PetscInt       i,mbs,Mbs;
1584a23d5eceSKris Buschelman 
1585a23d5eceSKris Buschelman   PetscFunctionBegin;
158677925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
15878c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
15888c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1589a23d5eceSKris Buschelman 
1590a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
1591a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1592a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
159377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
159477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1595899cda47SBarry Smith 
1596899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
15976148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
15986148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
1599899cda47SBarry Smith 
1600a23d5eceSKris Buschelman   if (d_nnz) {
1601899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
160277431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1603a23d5eceSKris Buschelman     }
1604a23d5eceSKris Buschelman   }
1605a23d5eceSKris Buschelman   if (o_nnz) {
1606899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
160777431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1608a23d5eceSKris Buschelman     }
1609a23d5eceSKris Buschelman   }
1610a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
1611a23d5eceSKris Buschelman 
1612a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1613899cda47SBarry Smith   mbs = B->rmap.n/bs;
1614899cda47SBarry Smith   Mbs = B->rmap.N/bs;
1615899cda47SBarry Smith   if (mbs*bs != B->rmap.n) {
1616899cda47SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap.N,bs);
1617a23d5eceSKris Buschelman   }
1618a23d5eceSKris Buschelman 
1619899cda47SBarry Smith   B->rmap.bs  = bs;
1620a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1621a23d5eceSKris Buschelman   b->mbs = mbs;
1622a23d5eceSKris Buschelman   b->nbs = mbs;
1623a23d5eceSKris Buschelman   b->Mbs = Mbs;
1624a23d5eceSKris Buschelman   b->Nbs = Mbs;
1625a23d5eceSKris Buschelman 
1626a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1627899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
1628a23d5eceSKris Buschelman   }
1629899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
1630899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
1631a23d5eceSKris Buschelman 
1632899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
1633899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
1634a23d5eceSKris Buschelman 
1635f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1636899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
16379c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
1638c60e587dSKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
163952e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
16409c097c71SKris Buschelman 
1641f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1642899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
16434aea0f9eSHong Zhang   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
1644589264c8SKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
164552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
1646a23d5eceSKris Buschelman 
1647a23d5eceSKris Buschelman   /* build cache for off array entries formed */
1648a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
1649a23d5eceSKris Buschelman 
1650a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1651a23d5eceSKris Buschelman }
1652a23d5eceSKris Buschelman EXTERN_C_END
1653a23d5eceSKris Buschelman 
16540bad9183SKris Buschelman /*MC
1655fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16560bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16570bad9183SKris Buschelman 
16580bad9183SKris Buschelman    Options Database Keys:
16590bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16600bad9183SKris Buschelman 
16610bad9183SKris Buschelman   Level: beginner
16620bad9183SKris Buschelman 
16630bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16640bad9183SKris Buschelman M*/
16650bad9183SKris Buschelman 
1666a23d5eceSKris Buschelman EXTERN_C_BEGIN
1667a23d5eceSKris Buschelman #undef __FUNCT__
16684a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1669be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1670b5df2d14SHong Zhang {
1671b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1672dfbe8321SBarry Smith   PetscErrorCode ierr;
1673b5df2d14SHong Zhang   PetscTruth     flg;
1674b5df2d14SHong Zhang 
1675b5df2d14SHong Zhang   PetscFunctionBegin;
1676b5df2d14SHong Zhang 
167738f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1678b0a32e0cSBarry Smith   B->data = (void*)b;
1679b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1680b5df2d14SHong Zhang 
1681b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1682b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1683b5df2d14SHong Zhang   B->mapping    = 0;
1684b5df2d14SHong Zhang   B->factor     = 0;
1685b5df2d14SHong Zhang   B->assembled  = PETSC_FALSE;
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
1688b5df2d14SHong Zhang   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1689b5df2d14SHong Zhang   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1690b5df2d14SHong Zhang 
1691b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1692899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1693b5df2d14SHong Zhang 
1694b5df2d14SHong Zhang   /* build cache for off array entries formed */
1695b5df2d14SHong Zhang   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1696b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1697b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1698b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1699b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1700b5df2d14SHong Zhang 
1701f2a5309cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1702b5df2d14SHong Zhang   /* stuff for MatSetValues_XXX in single precision */
170364a35ccbSBarry Smith   b->setvalueslen     = 0;
1704b5df2d14SHong Zhang   b->setvaluescopy    = PETSC_NULL;
1705b5df2d14SHong Zhang #endif
1706b5df2d14SHong Zhang 
1707b5df2d14SHong Zhang   /* stuff used in block assembly */
1708b5df2d14SHong Zhang   b->barray       = 0;
1709b5df2d14SHong Zhang 
1710b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1711b5df2d14SHong Zhang   b->lvec         = 0;
1712b5df2d14SHong Zhang   b->Mvctx        = 0;
171340781036SHong Zhang   b->slvec0       = 0;
171440781036SHong Zhang   b->slvec0b      = 0;
171540781036SHong Zhang   b->slvec1       = 0;
171640781036SHong Zhang   b->slvec1a      = 0;
171740781036SHong Zhang   b->slvec1b      = 0;
171840781036SHong Zhang   b->sMvctx       = 0;
1719b5df2d14SHong Zhang 
1720b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1721b5df2d14SHong Zhang   b->rowindices   = 0;
1722b5df2d14SHong Zhang   b->rowvalues    = 0;
1723b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1724b5df2d14SHong Zhang 
1725b5df2d14SHong Zhang   /* hash table stuff */
1726b5df2d14SHong Zhang   b->ht           = 0;
1727b5df2d14SHong Zhang   b->hd           = 0;
1728b5df2d14SHong Zhang   b->ht_size      = 0;
1729b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1730b5df2d14SHong Zhang   b->ht_fact      = 0;
1731b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1732b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1733b5df2d14SHong Zhang 
173459ffdab8SBarry Smith   b->in_loc       = 0;
173559ffdab8SBarry Smith   b->v_loc        = 0;
173659ffdab8SBarry Smith   b->n_loc        = 0;
173777925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17388c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1739b5df2d14SHong Zhang     if (flg) {
1740f6275e2eSBarry Smith       PetscReal fact = 1.39;
17414e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17428c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1743b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1744b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17451e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1746b5df2d14SHong Zhang     }
17478c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17488c07d4e3SBarry Smith 
1749b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1750b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1751b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1752b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1753b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1754b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1755b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1756b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1757b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1758a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1759a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1760a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
176123ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
176223ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
176323ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
176423ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
176517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1766b5df2d14SHong Zhang   PetscFunctionReturn(0);
1767b5df2d14SHong Zhang }
1768273d9f13SBarry Smith EXTERN_C_END
1769b5df2d14SHong Zhang 
1770209238afSKris Buschelman /*MC
1771002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1772209238afSKris Buschelman 
1773209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1774209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1775209238afSKris Buschelman 
1776209238afSKris Buschelman    Options Database Keys:
1777209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1778209238afSKris Buschelman 
1779209238afSKris Buschelman   Level: beginner
1780209238afSKris Buschelman 
1781209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1782209238afSKris Buschelman M*/
1783209238afSKris Buschelman 
1784209238afSKris Buschelman EXTERN_C_BEGIN
1785209238afSKris Buschelman #undef __FUNCT__
1786209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1787be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1788dfbe8321SBarry Smith {
17896849ba73SBarry Smith   PetscErrorCode ierr;
17901302d50aSBarry Smith   PetscMPIInt    size;
1791209238afSKris Buschelman 
1792209238afSKris Buschelman   PetscFunctionBegin;
1793209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1794209238afSKris Buschelman   if (size == 1) {
1795209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1796209238afSKris Buschelman   } else {
1797209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1798209238afSKris Buschelman   }
1799209238afSKris Buschelman   PetscFunctionReturn(0);
1800209238afSKris Buschelman }
1801209238afSKris Buschelman EXTERN_C_END
1802209238afSKris Buschelman 
18034a2ae208SSatish Balay #undef __FUNCT__
18044a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1805b5df2d14SHong Zhang /*@C
1806b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1807b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1808b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1809b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1810b5df2d14SHong Zhang 
1811b5df2d14SHong Zhang    Collective on Mat
1812b5df2d14SHong Zhang 
1813b5df2d14SHong Zhang    Input Parameters:
1814b5df2d14SHong Zhang +  A - the matrix
1815b5df2d14SHong Zhang .  bs   - size of blockk
1816b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1817b5df2d14SHong Zhang            submatrix  (same for all local rows)
1818b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18196d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18206d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18216d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1822b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1823b5df2d14SHong Zhang            submatrix (same for all local rows).
1824b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1825b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1826b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1827b5df2d14SHong Zhang 
1828b5df2d14SHong Zhang 
1829b5df2d14SHong Zhang    Options Database Keys:
1830b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1831b5df2d14SHong Zhang                      block calculations (much slower)
1832b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1833b5df2d14SHong Zhang 
1834b5df2d14SHong Zhang    Notes:
1835b5df2d14SHong Zhang 
1836b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1837b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1838b5df2d14SHong Zhang 
183949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184049a6f317SBarry Smith 
1841b5df2d14SHong Zhang    Storage Information:
1842b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1843b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1844b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1845b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1846b5df2d14SHong Zhang 
1847b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1848b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1849b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1850b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1851b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1852b5df2d14SHong Zhang 
1853b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1854b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1855b5df2d14SHong Zhang 
1856b5df2d14SHong Zhang .vb
1857b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1858b5df2d14SHong Zhang           -------------------
1859b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1860b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1861b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1862b5df2d14SHong Zhang           -------------------
1863b5df2d14SHong Zhang .ve
1864b5df2d14SHong Zhang 
1865b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1866b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18676d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18686d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1869b5df2d14SHong Zhang 
18706d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18716d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1872b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1873b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1874b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1875b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1876b5df2d14SHong Zhang    matrices.
1877b5df2d14SHong Zhang 
1878b5df2d14SHong Zhang    Level: intermediate
1879b5df2d14SHong Zhang 
1880b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1881b5df2d14SHong Zhang 
1882b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1883b5df2d14SHong Zhang @*/
1884be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1885b5df2d14SHong Zhang {
18861302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1887b5df2d14SHong Zhang 
1888b5df2d14SHong Zhang   PetscFunctionBegin;
1889a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1890a23d5eceSKris Buschelman   if (f) {
1891a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1892b5df2d14SHong Zhang   }
1893b5df2d14SHong Zhang   PetscFunctionReturn(0);
1894b5df2d14SHong Zhang }
1895b5df2d14SHong Zhang 
18964a2ae208SSatish Balay #undef __FUNCT__
18974a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1898a30f8f8cSSatish Balay /*@C
1899a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1900a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1901a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1902a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1903a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1904a30f8f8cSSatish Balay 
1905a30f8f8cSSatish Balay    Collective on MPI_Comm
1906a30f8f8cSSatish Balay 
1907a30f8f8cSSatish Balay    Input Parameters:
1908a30f8f8cSSatish Balay +  comm - MPI communicator
1909a30f8f8cSSatish Balay .  bs   - size of blockk
1910a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1911a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1912a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1913a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1914a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1915a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1916a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1917a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1918a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1919a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1920a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19216d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19226d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19236d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1924a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1925a30f8f8cSSatish Balay            submatrix (same for all local rows).
1926a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1927a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1928a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1929a30f8f8cSSatish Balay 
1930a30f8f8cSSatish Balay    Output Parameter:
1931a30f8f8cSSatish Balay .  A - the matrix
1932a30f8f8cSSatish Balay 
1933a30f8f8cSSatish Balay    Options Database Keys:
1934a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1935a30f8f8cSSatish Balay                      block calculations (much slower)
1936a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1937a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1938a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1939a30f8f8cSSatish Balay 
1940175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1941175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
1942175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
1943175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1944175b88e8SBarry Smith 
1945a30f8f8cSSatish Balay    Notes:
1946d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19476d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1948d1be2dadSMatthew Knepley 
1949a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1950a30f8f8cSSatish Balay    (possibly both).
1951a30f8f8cSSatish Balay 
1952a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1953a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1954a30f8f8cSSatish Balay 
195549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
195649a6f317SBarry Smith 
1957a30f8f8cSSatish Balay    Storage Information:
1958a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1959a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1960a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1961a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1962a30f8f8cSSatish Balay 
1963a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1964a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1965a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1966a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1967a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1968a30f8f8cSSatish Balay 
1969a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1970a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1971a30f8f8cSSatish Balay 
1972a30f8f8cSSatish Balay .vb
1973a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1974a30f8f8cSSatish Balay           -------------------
1975a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1976a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1977a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1978a30f8f8cSSatish Balay           -------------------
1979a30f8f8cSSatish Balay .ve
1980a30f8f8cSSatish Balay 
1981a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1982a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19836d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19846d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1985a30f8f8cSSatish Balay 
19866d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19876d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1988a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1989a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1990a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1991a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1992a30f8f8cSSatish Balay    matrices.
1993a30f8f8cSSatish Balay 
1994a30f8f8cSSatish Balay    Level: intermediate
1995a30f8f8cSSatish Balay 
1996a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
1997a30f8f8cSSatish Balay 
1998a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1999a30f8f8cSSatish Balay @*/
2000a30f8f8cSSatish Balay 
2001be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2002a30f8f8cSSatish Balay {
20036849ba73SBarry Smith   PetscErrorCode ierr;
20041302d50aSBarry Smith   PetscMPIInt    size;
2005a30f8f8cSSatish Balay 
2006a30f8f8cSSatish Balay   PetscFunctionBegin;
2007f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2008f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2009273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2010273d9f13SBarry Smith   if (size > 1) {
2011b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2012b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2013273d9f13SBarry Smith   } else {
2014273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2015273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2016273d9f13SBarry Smith   }
2017a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2018a30f8f8cSSatish Balay }
2019a30f8f8cSSatish Balay 
2020a30f8f8cSSatish Balay 
20214a2ae208SSatish Balay #undef __FUNCT__
20224a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2024a30f8f8cSSatish Balay {
2025a30f8f8cSSatish Balay   Mat            mat;
2026a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2027dfbe8321SBarry Smith   PetscErrorCode ierr;
2028899cda47SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap.bs,mbs=oldmat->mbs;
2029387bc808SHong Zhang   PetscScalar    *array;
2030a30f8f8cSSatish Balay 
2031a30f8f8cSSatish Balay   PetscFunctionBegin;
2032a30f8f8cSSatish Balay   *newmat       = 0;
2033f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2034899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2035be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
20361d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2037899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2038899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2039e1b6402fSHong Zhang 
204082327fa8SHong Zhang   mat->factor       = matin->factor;
2041273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
204282327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20437fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20447fff6886SHong Zhang 
2045b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2046a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2047a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2048a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2049a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2050a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2051a30f8f8cSSatish Balay 
2052899cda47SBarry Smith 
2053a30f8f8cSSatish Balay   a->size         = oldmat->size;
2054a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2055a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2056a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2057a30f8f8cSSatish Balay   a->rowindices   = 0;
2058a30f8f8cSSatish Balay   a->rowvalues    = 0;
2059a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2060a30f8f8cSSatish Balay   a->barray       = 0;
2061899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2062899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2063899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2064899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2065a30f8f8cSSatish Balay 
2066a30f8f8cSSatish Balay   /* hash table stuff */
2067a30f8f8cSSatish Balay   a->ht           = 0;
2068a30f8f8cSSatish Balay   a->hd           = 0;
2069a30f8f8cSSatish Balay   a->ht_size      = 0;
2070a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2071a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2072a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2073a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2074a30f8f8cSSatish Balay 
2075899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2076a30f8f8cSSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2077899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
2078a30f8f8cSSatish Balay   if (oldmat->colmap) {
2079a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2080a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2081a30f8f8cSSatish Balay #else
20821302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
208352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20841302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2085a30f8f8cSSatish Balay #endif
2086a30f8f8cSSatish Balay   } else a->colmap = 0;
2087387bc808SHong Zhang 
2088a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20891302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
209052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20911302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2092a30f8f8cSSatish Balay   } else a->garray = 0;
2093a30f8f8cSSatish Balay 
2094a30f8f8cSSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
209552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2096a30f8f8cSSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
209752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
209882327fa8SHong Zhang 
209982327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
210052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
210182327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
210252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2103387bc808SHong Zhang 
2104387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21051ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2106387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2107387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21081ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21091ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2110387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21111ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
211252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
211452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
211552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
211652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2117387bc808SHong Zhang 
2118387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2119387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2120387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
212282327fa8SHong Zhang 
2123a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
212452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2125a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2127b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
2128a30f8f8cSSatish Balay   *newmat = mat;
2129a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2130a30f8f8cSSatish Balay }
2131a30f8f8cSSatish Balay 
2132a30f8f8cSSatish Balay #include "petscsys.h"
2133a30f8f8cSSatish Balay 
21344a2ae208SSatish Balay #undef __FUNCT__
21354a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2136f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
2137a30f8f8cSSatish Balay {
2138a30f8f8cSSatish Balay   Mat            A;
21396849ba73SBarry Smith   PetscErrorCode ierr;
214013f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
214187828ca2SBarry Smith   PetscScalar    *vals,*buf;
2142a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2143a30f8f8cSSatish Balay   MPI_Status     status;
21442fd7e33dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens;
214513f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21462fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21471302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21481302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21491302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
215013f74950SBarry Smith   int            fd;
2151a30f8f8cSSatish Balay 
2152a30f8f8cSSatish Balay   PetscFunctionBegin;
215377925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21548c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21558c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2156a30f8f8cSSatish Balay 
2157a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2158a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2159a30f8f8cSSatish Balay   if (!rank) {
2160b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2162552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2163a30f8f8cSSatish Balay     if (header[3] < 0) {
216429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2165a30f8f8cSSatish Balay     }
2166a30f8f8cSSatish Balay   }
2167a30f8f8cSSatish Balay 
2168a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2169a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2170a30f8f8cSSatish Balay 
217129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
2172a30f8f8cSSatish Balay 
2173a30f8f8cSSatish Balay   /*
2174a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2175a30f8f8cSSatish Balay      divisible by the blocksize
2176a30f8f8cSSatish Balay   */
2177a30f8f8cSSatish Balay   Mbs        = M/bs;
2178a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2179a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2180a30f8f8cSSatish Balay   else                  Mbs++;
2181a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21821e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2183a30f8f8cSSatish Balay   }
2184a30f8f8cSSatish Balay 
2185a30f8f8cSSatish Balay   /* determine ownership of all rows */
2186a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2187a30f8f8cSSatish Balay   m          = mbs*bs;
2188a7cc72afSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
2189a30f8f8cSSatish Balay   browners   = rowners + size + 1;
2190a30f8f8cSSatish Balay   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2191a30f8f8cSSatish Balay   rowners[0] = 0;
2192a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2193a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2194a30f8f8cSSatish Balay   rstart = rowners[rank];
2195a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2196a30f8f8cSSatish Balay 
2197a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21982fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2199a30f8f8cSSatish Balay   if (!rank) {
22001302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2201a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2203a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2204a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2205a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2206a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay   } else {
2208a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2209a30f8f8cSSatish Balay   }
2210a30f8f8cSSatish Balay 
22110222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2212a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22131302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22141302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2215a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2216a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2217a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2218a30f8f8cSSatish Balay       }
2219a30f8f8cSSatish Balay     }
2220a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2221a30f8f8cSSatish Balay 
2222a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2223a30f8f8cSSatish Balay     maxnz = 0;
2224a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2225a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2226a30f8f8cSSatish Balay     }
22271302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2228a30f8f8cSSatish Balay 
2229a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2230a30f8f8cSSatish Balay     nz     = procsnz[0];
22311302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2232a30f8f8cSSatish Balay     mycols = ibuf;
2233a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2234a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2235a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2236a30f8f8cSSatish Balay 
2237a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2238a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2239a30f8f8cSSatish Balay       nz   = procsnz[i];
2240a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2241a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2242a30f8f8cSSatish Balay     }
2243a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2244a30f8f8cSSatish Balay     if (size != 1) {
2245a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2246a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2247a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2248a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2249a30f8f8cSSatish Balay     }
2250a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22510222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2252a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2253a30f8f8cSSatish Balay     nz = 0;
2254a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2255a30f8f8cSSatish Balay       nz += locrowlens[i];
2256a30f8f8cSSatish Balay     }
22571302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2258a30f8f8cSSatish Balay     mycols = ibuf;
2259a30f8f8cSSatish Balay     /* receive message of column indices*/
2260a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2261a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
226229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2263a30f8f8cSSatish Balay   }
2264a30f8f8cSSatish Balay 
2265a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
22661302d50aSBarry Smith   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
2267a30f8f8cSSatish Balay   odlens   = dlens + (rend-rstart);
22681302d50aSBarry Smith   ierr     = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
22691302d50aSBarry Smith   ierr     = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2270a30f8f8cSSatish Balay   masked1  = mask    + Mbs;
2271a30f8f8cSSatish Balay   masked2  = masked1 + Mbs;
2272a30f8f8cSSatish Balay   rowcount = 0; nzcount = 0;
2273a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2274a30f8f8cSSatish Balay     dcount  = 0;
2275a30f8f8cSSatish Balay     odcount = 0;
2276a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2277a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2278a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22790222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2280a30f8f8cSSatish Balay         if (!mask[tmp]) {
2281a30f8f8cSSatish Balay           mask[tmp] = 1;
22820222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22830222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2284a30f8f8cSSatish Balay         }
2285a30f8f8cSSatish Balay       }
2286a30f8f8cSSatish Balay       rowcount++;
2287a30f8f8cSSatish Balay     }
2288a30f8f8cSSatish Balay 
22890222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22900222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2291a30f8f8cSSatish Balay 
2292a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2293a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2294a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2295a30f8f8cSSatish Balay   }
2296a30f8f8cSSatish Balay 
2297a30f8f8cSSatish Balay   /* create our matrix */
2298f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2299f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
230022191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
230122191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2302a30f8f8cSSatish Balay 
2303a30f8f8cSSatish Balay   if (!rank) {
230487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2305a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2306a30f8f8cSSatish Balay     nz = procsnz[0];
2307a30f8f8cSSatish Balay     vals = buf;
2308a30f8f8cSSatish Balay     mycols = ibuf;
2309a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2310a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2311a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2312a30f8f8cSSatish Balay 
2313a30f8f8cSSatish Balay     /* insert into matrix */
2314a30f8f8cSSatish Balay     jj      = rstart*bs;
2315a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23167e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2317a30f8f8cSSatish Balay       mycols += locrowlens[i];
2318a30f8f8cSSatish Balay       vals   += locrowlens[i];
2319a30f8f8cSSatish Balay       jj++;
2320a30f8f8cSSatish Balay     }
23217e06b45fSHong Zhang 
2322a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2323a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2324a30f8f8cSSatish Balay       nz   = procsnz[i];
2325a30f8f8cSSatish Balay       vals = buf;
2326a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2327a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
2328a30f8f8cSSatish Balay     }
2329a30f8f8cSSatish Balay     /* the last proc */
2330a30f8f8cSSatish Balay     if (size != 1){
2331a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2332a30f8f8cSSatish Balay       vals = buf;
2333a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2334a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2335a30f8f8cSSatish Balay       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
2336a30f8f8cSSatish Balay     }
2337a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23387e06b45fSHong Zhang 
2339a30f8f8cSSatish Balay   } else {
2340a30f8f8cSSatish Balay     /* receive numeric values */
234187828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2342a30f8f8cSSatish Balay 
2343a30f8f8cSSatish Balay     /* receive message of values*/
2344a30f8f8cSSatish Balay     vals   = buf;
2345a30f8f8cSSatish Balay     mycols = ibuf;
2346a30f8f8cSSatish Balay     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2347a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
234829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2349a30f8f8cSSatish Balay 
2350a30f8f8cSSatish Balay     /* insert into matrix */
2351a30f8f8cSSatish Balay     jj      = rstart*bs;
2352a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2353a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2354a30f8f8cSSatish Balay       mycols += locrowlens[i];
2355a30f8f8cSSatish Balay       vals   += locrowlens[i];
2356a30f8f8cSSatish Balay       jj++;
2357a30f8f8cSSatish Balay     }
2358a30f8f8cSSatish Balay   }
23597e06b45fSHong Zhang 
2360a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2361a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2362a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2363a30f8f8cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2365a30f8f8cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
2366a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2367a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
236822191285SKris Buschelman   *newmat = A;
2369a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2370a30f8f8cSSatish Balay }
2371a30f8f8cSSatish Balay 
23724a2ae208SSatish Balay #undef __FUNCT__
23734a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2374dcf5cc72SBarry Smith /*XXXXX@
2375a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2376a30f8f8cSSatish Balay 
2377a30f8f8cSSatish Balay    Input Parameters:
2378a30f8f8cSSatish Balay .  mat  - the matrix
2379a30f8f8cSSatish Balay .  fact - factor
2380a30f8f8cSSatish Balay 
2381a30f8f8cSSatish Balay    Collective on Mat
2382a30f8f8cSSatish Balay 
2383a30f8f8cSSatish Balay    Level: advanced
2384a30f8f8cSSatish Balay 
2385a30f8f8cSSatish Balay   Notes:
2386a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2387a30f8f8cSSatish Balay 
2388a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2389a30f8f8cSSatish Balay 
2390a30f8f8cSSatish Balay .seealso: MatSetOption()
2391dcf5cc72SBarry Smith @XXXXX*/
2392dcf5cc72SBarry Smith 
239324d5174aSHong Zhang 
23944a2ae208SSatish Balay #undef __FUNCT__
2395985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2396985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
239724d5174aSHong Zhang {
239824d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2399f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2400ca54ac64SHong Zhang   PetscReal      atmp;
240187828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2402dfbe8321SBarry Smith   PetscErrorCode ierr;
24031302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24041302d50aSBarry Smith   PetscMPIInt    rank,size;
24051302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
240687828ca2SBarry Smith   PetscScalar    *va;
24078a1c53f2SBarry Smith   MatScalar      *ba;
2408f4c0e9e4SHong Zhang   MPI_Status     stat;
240924d5174aSHong Zhang 
241024d5174aSHong Zhang   PetscFunctionBegin;
2411985db425SBarry Smith   if (idx) SETERRQ(PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2412985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24131ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2414f4c0e9e4SHong Zhang 
241556faa61eSBarry Smith   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
241656faa61eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2417f4c0e9e4SHong Zhang 
2418899cda47SBarry Smith   bs   = A->rmap.bs;
2419f4c0e9e4SHong Zhang   mbs  = a->mbs;
2420f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2421f4c0e9e4SHong Zhang   ba   = b->a;
2422f4c0e9e4SHong Zhang   bi   = b->i;
2423f4c0e9e4SHong Zhang   bj   = b->j;
2424f4c0e9e4SHong Zhang 
2425f4c0e9e4SHong Zhang   /* find ownerships */
2426899cda47SBarry Smith   rowners_bs = A->rmap.range;
2427f4c0e9e4SHong Zhang 
2428f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
242982502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2430ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2431f4c0e9e4SHong Zhang 
2432f4c0e9e4SHong Zhang   /* row_max for B */
2433b8475685SHong Zhang   if (rank != size-1){
2434f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2435f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2436f4c0e9e4SHong Zhang       brow  = bs*i;
2437f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2438f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2439f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2440ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
244104d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2442f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2443f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2444ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2445ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2446f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2447f4c0e9e4SHong Zhang           }
2448f4c0e9e4SHong Zhang         }
2449f4c0e9e4SHong Zhang         bj++;
2450f4c0e9e4SHong Zhang       }
2451f4c0e9e4SHong Zhang     }
2452f4c0e9e4SHong Zhang 
2453f4c0e9e4SHong Zhang     /* send values to its owners */
2454f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2455f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2456ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
245756faa61eSBarry Smith       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,A->comm);CHKERRQ(ierr);
2458ca54ac64SHong Zhang     }
2459f4c0e9e4SHong Zhang   }
2460f4c0e9e4SHong Zhang 
2461f4c0e9e4SHong Zhang   /* receive values */
2462ca54ac64SHong Zhang   if (rank){
2463f4c0e9e4SHong Zhang     rvalues = work;
2464ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2465f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
246656faa61eSBarry Smith       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,A->comm,&stat);CHKERRQ(ierr);
2467f4c0e9e4SHong Zhang       /* process values */
2468f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2469ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2470f4c0e9e4SHong Zhang       }
2471f4c0e9e4SHong Zhang     }
2472ca54ac64SHong Zhang   }
2473f4c0e9e4SHong Zhang 
24741ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2475ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
247624d5174aSHong Zhang   PetscFunctionReturn(0);
247724d5174aSHong Zhang }
24782798e883SHong Zhang 
24792798e883SHong Zhang #undef __FUNCT__
24802798e883SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ"
24811302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24822798e883SHong Zhang {
24832798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2484dfbe8321SBarry Smith   PetscErrorCode ierr;
2485899cda47SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap.bs;
2486efb30889SBarry Smith   PetscScalar    *x,*b,*ptr,zero=0.0;
2487ffe4fb16SHong Zhang   Vec            bb1;
2488ffe4fb16SHong Zhang 
2489ffe4fb16SHong Zhang   PetscFunctionBegin;
249077431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2491ffe4fb16SHong Zhang   if (bs > 1)
2492ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2493ffe4fb16SHong Zhang 
2494ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2495ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2496ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2497ffe4fb16SHong Zhang       its--;
2498ffe4fb16SHong Zhang     }
2499ffe4fb16SHong Zhang 
2500ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2501ffe4fb16SHong Zhang     while (its--){
2502ffe4fb16SHong Zhang 
2503ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2504ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2505ffe4fb16SHong Zhang 
2506ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25071ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25081ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2509ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25101ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2511ffe4fb16SHong Zhang 
2512efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2513ffe4fb16SHong Zhang 
2514ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25151ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25161ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2517ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25181ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2519ffe4fb16SHong Zhang 
2520ffe4fb16SHong Zhang       /* set slvec1b = 0 */
25212dcb1b2aSMatthew Knepley       ierr = VecSet(mat->slvec1b,zero);CHKERRQ(ierr);
2522ffe4fb16SHong Zhang 
2523ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25241ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25251ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2526ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2527ffe4fb16SHong Zhang 
2528ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2529ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2530ffe4fb16SHong Zhang 
2531ffe4fb16SHong Zhang       /* local diagonal sweep */
2532ffe4fb16SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang     }
2534ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2535ffe4fb16SHong Zhang   } else {
2536ffe4fb16SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2537ffe4fb16SHong Zhang   }
2538ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2539ffe4fb16SHong Zhang }
2540ffe4fb16SHong Zhang 
2541ffe4fb16SHong Zhang #undef __FUNCT__
2542ffe4fb16SHong Zhang #define __FUNCT__ "MatRelax_MPISBAIJ_2comm"
25431302d50aSBarry Smith PetscErrorCode MatRelax_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2544ffe4fb16SHong Zhang {
2545ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2546dfbe8321SBarry Smith   PetscErrorCode ierr;
25472798e883SHong Zhang   Vec            lvec1,bb1;
25482798e883SHong Zhang 
25492798e883SHong Zhang   PetscFunctionBegin;
255077431f27SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2551899cda47SBarry Smith   if (matin->rmap.bs > 1)
25522798e883SHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
25532798e883SHong Zhang 
2554c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
25552798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
2556bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
25572798e883SHong Zhang       its--;
25582798e883SHong Zhang     }
25592798e883SHong Zhang 
25602798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
25612798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25622798e883SHong Zhang     while (its--){
2563ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25642798e883SHong Zhang 
25652798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
25662798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2567efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
25682798e883SHong Zhang 
2569ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25702798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2571ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25722798e883SHong Zhang 
25732798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2574efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
25752798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
25762798e883SHong Zhang 
2577ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
25782798e883SHong Zhang 
2579c14dc6b6SHong Zhang       /* diagonal sweep */
2580bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
25812798e883SHong Zhang     }
25822798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
25832798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2584c14dc6b6SHong Zhang   } else {
2585c14dc6b6SHong Zhang     SETERRQ(PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2586c14dc6b6SHong Zhang   }
25872798e883SHong Zhang   PetscFunctionReturn(0);
25882798e883SHong Zhang }
25892798e883SHong Zhang 
2590