1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h> 3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 5a30f8f8cSSatish Balay 666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat) 726cec326SBarry Smith { 826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 926cec326SBarry Smith 1026cec326SBarry Smith PetscFunctionBegin; 1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1826cec326SBarry Smith #else 1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2026cec326SBarry Smith #endif 2126cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b)); 2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1)); 2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a)); 2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b)); 2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx)); 3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 3126cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 3226cec326SBarry Smith PetscCall(PetscFree(baij->hd)); 3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag)); 3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1)); 3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1)); 3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE) 3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy)); 3826cec326SBarry Smith #endif 3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc)); 4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc)); 4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 4226cec326SBarry Smith PetscCall(PetscFree(mat->data)); 4326cec326SBarry Smith 4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL)); 4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL)); 4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL)); 5126cec326SBarry Smith #endif 5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL)); 5426cec326SBarry Smith #endif 5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL)); 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL)); 5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 5826cec326SBarry Smith } 5926cec326SBarry Smith 6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */ 6126cec326SBarry Smith #define TYPE SBAIJ 6226cec326SBarry Smith #define TYPE_SBAIJ 6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 6426cec326SBarry Smith #undef TYPE 6526cec326SBarry Smith #undef TYPE_SBAIJ 6626cec326SBarry Smith 676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 696214f412SHong Zhang #endif 70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 72d24d4204SJose E. Roman #endif 73b147fbf3SStefano Zampini 74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */ 75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill) 76d71ae5a4SJacob Faibussowitsch { 77b147fbf3SStefano Zampini Mat preallocator; 78b147fbf3SStefano Zampini PetscInt r, rstart, rend; 79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N; 80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE; 81b147fbf3SStefano Zampini 82b147fbf3SStefano Zampini PetscFunctionBegin; 83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2); 85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3); 879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong)); 885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts"); 89b147fbf3SStefano Zampini } 90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5); 919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs)); 929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N)); 939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator)); 959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs)); 979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N)); 989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend)); 100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) { 101b147fbf3SStefano Zampini PetscInt ncols; 102b147fbf3SStefano Zampini const PetscInt *row; 103b147fbf3SStefano Zampini const PetscScalar *vals; 104b147fbf3SStefano Zampini 105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) { 1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals)); 1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES)); 10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES)); 1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals)); 110b147fbf3SStefano Zampini } 111b147fbf3SStefano Zampini } 1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B)); 1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117b147fbf3SStefano Zampini } 118b147fbf3SStefano Zampini 119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 120d71ae5a4SJacob Faibussowitsch { 121b147fbf3SStefano Zampini Mat B; 122b147fbf3SStefano Zampini PetscInt r; 123b147fbf3SStefano Zampini 124b147fbf3SStefano Zampini PetscFunctionBegin; 125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense; 127b147fbf3SStefano Zampini PetscInt bs; 128b147fbf3SStefano Zampini 1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype)); 1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs)); 1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, "")); 13728d58a37SPierre Jolivet if (!isdense) { 1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE)); 1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 14128d58a37SPierre Jolivet } else { 1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B)); 14328d58a37SPierre Jolivet } 14428d58a37SPierre Jolivet } else { 14528d58a37SPierre Jolivet B = *newmat; 1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 14728d58a37SPierre Jolivet } 148b147fbf3SStefano Zampini 1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) { 151b147fbf3SStefano Zampini PetscInt ncols; 152b147fbf3SStefano Zampini const PetscInt *row; 153b147fbf3SStefano Zampini const PetscScalar *vals; 154b147fbf3SStefano Zampini 1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals)); 1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES)); 157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) { 159eb1ec7c1SStefano Zampini PetscInt i; 16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES)); 161eb1ec7c1SStefano Zampini } else { 1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 163eb1ec7c1SStefano Zampini } 164eb1ec7c1SStefano Zampini #else 1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES)); 166eb1ec7c1SStefano Zampini #endif 1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals)); 168b147fbf3SStefano Zampini } 1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172b147fbf3SStefano Zampini 173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) { 1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 175b147fbf3SStefano Zampini } else { 176b147fbf3SStefano Zampini *newmat = B; 177b147fbf3SStefano Zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179b147fbf3SStefano Zampini } 180b147fbf3SStefano Zampini 18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat) 182d71ae5a4SJacob Faibussowitsch { 183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 184a30f8f8cSSatish Balay 185a30f8f8cSSatish Balay PetscFunctionBegin; 1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189a30f8f8cSSatish Balay } 190a30f8f8cSSatish Balay 19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat) 192d71ae5a4SJacob Faibussowitsch { 193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 194a30f8f8cSSatish Balay 195a30f8f8cSSatish Balay PetscFunctionBegin; 1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199a30f8f8cSSatish Balay } 200a30f8f8cSSatish Balay 201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 202a8f51744SPierre Jolivet do { \ 203a30f8f8cSSatish Balay brow = row / bs; \ 2049371c9d4SSatish Balay rp = aj + ai[brow]; \ 2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 2069371c9d4SSatish Balay rmax = aimax[brow]; \ 2079371c9d4SSatish Balay nrow = ailen[brow]; \ 208a30f8f8cSSatish Balay bcol = col / bs; \ 2099371c9d4SSatish Balay ridx = row % bs; \ 2109371c9d4SSatish Balay cidx = col % bs; \ 2119371c9d4SSatish Balay low = 0; \ 2129371c9d4SSatish Balay high = nrow; \ 213a30f8f8cSSatish Balay while (high - low > 3) { \ 214a30f8f8cSSatish Balay t = (low + high) / 2; \ 215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 216a30f8f8cSSatish Balay else low = t; \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223a30f8f8cSSatish Balay else *bap = value; \ 224a30f8f8cSSatish Balay goto a_noinsert; \ 225a30f8f8cSSatish Balay } \ 226a30f8f8cSSatish Balay } \ 227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 230a30f8f8cSSatish Balay N = nrow++ - 1; \ 231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 237e56f5c9eSBarry Smith A->nonzerostate++; \ 238a30f8f8cSSatish Balay a_noinsert:; \ 239a30f8f8cSSatish Balay ailen[brow] = nrow; \ 240a8f51744SPierre Jolivet } while (0) 241e5e170daSBarry Smith 242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 243a8f51744SPierre Jolivet do { \ 244a30f8f8cSSatish Balay brow = row / bs; \ 2459371c9d4SSatish Balay rp = bj + bi[brow]; \ 2469371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 2479371c9d4SSatish Balay rmax = bimax[brow]; \ 2489371c9d4SSatish Balay nrow = bilen[brow]; \ 249a30f8f8cSSatish Balay bcol = col / bs; \ 2509371c9d4SSatish Balay ridx = row % bs; \ 2519371c9d4SSatish Balay cidx = col % bs; \ 2529371c9d4SSatish Balay low = 0; \ 2539371c9d4SSatish Balay high = nrow; \ 254a30f8f8cSSatish Balay while (high - low > 3) { \ 255a30f8f8cSSatish Balay t = (low + high) / 2; \ 256a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 257a30f8f8cSSatish Balay else low = t; \ 258a30f8f8cSSatish Balay } \ 259a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \ 260a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 261a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 262a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 263a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 264a30f8f8cSSatish Balay else *bap = value; \ 265a30f8f8cSSatish Balay goto b_noinsert; \ 266a30f8f8cSSatish Balay } \ 267a30f8f8cSSatish Balay } \ 268a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 2695f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 270fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 271a30f8f8cSSatish Balay N = nrow++ - 1; \ 272a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 276a30f8f8cSSatish Balay rp[_i] = bcol; \ 277a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 278e56f5c9eSBarry Smith B->nonzerostate++; \ 279a30f8f8cSSatish Balay b_noinsert:; \ 280a30f8f8cSSatish Balay bilen[brow] = nrow; \ 281a8f51744SPierre Jolivet } while (0) 282a30f8f8cSSatish Balay 283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 284da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error 285a30f8f8cSSatish Balay */ 28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 287d71ae5a4SJacob Faibussowitsch { 288a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 289a30f8f8cSSatish Balay MatScalar value; 290ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 2911302d50aSBarry Smith PetscInt i, j, row, col; 292d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 293d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 294d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay /* Some Variables required in the macro */ 297a30f8f8cSSatish Balay Mat A = baij->A; 298a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)(A)->data; 2991302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 300a30f8f8cSSatish Balay MatScalar *aa = a->a; 301a30f8f8cSSatish Balay 302a30f8f8cSSatish Balay Mat B = baij->B; 303a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 3041302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 305a30f8f8cSSatish Balay MatScalar *ba = b->a; 306a30f8f8cSSatish Balay 3071302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 3081302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 309a30f8f8cSSatish Balay MatScalar *ap, *bap; 310a30f8f8cSSatish Balay 311a30f8f8cSSatish Balay /* for stash */ 3120298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL; 3130298fd71SBarry Smith MatScalar *v_loc = NULL; 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay PetscFunctionBegin; 316a30f8f8cSSatish Balay if (!baij->donotstash) { 31759ffdab8SBarry Smith if (n > baij->n_loc) { 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc)); 3209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc)); 3219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc)); 32226fbe8dcSKarl Rupp 32359ffdab8SBarry Smith baij->n_loc = n; 32459ffdab8SBarry Smith } 32559ffdab8SBarry Smith in_loc = baij->in_loc; 32659ffdab8SBarry Smith v_loc = baij->v_loc; 327a30f8f8cSSatish Balay } 328a30f8f8cSSatish Balay 329a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 330a30f8f8cSSatish Balay if (im[i] < 0) continue; 3315f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 332a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 333a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 334a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 33501b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) { 33601b2bd88SHong Zhang if (a->ignore_ltriangular) { 33701b2bd88SHong Zhang continue; /* ignore lower triangular blocks */ 33826fbe8dcSKarl Rupp } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 33901b2bd88SHong Zhang } 340a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */ 341a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 3429371c9d4SSatish Balay brow = row / bs; 3439371c9d4SSatish Balay bcol = col / bs; 344a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 345db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 346db4deed7SKarl Rupp else value = v[i + j * m]; 347d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 3489566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */ 349f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 350f7d195e4SLawrence Mitchell continue; 351f7d195e4SLawrence Mitchell } else { 352f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 353f7d195e4SLawrence Mitchell /* off-diag entry (B) */ 354a30f8f8cSSatish Balay if (mat->was_assembled) { 35548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 357eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 35871730473SSatish Balay col = col - 1; 359a30f8f8cSSatish Balay #else 36071730473SSatish Balay col = baij->colmap[in[j] / bs] - 1; 361a30f8f8cSSatish Balay #endif 362a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) { 3639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 364a30f8f8cSSatish Balay col = in[j]; 365a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 366a30f8f8cSSatish Balay B = baij->B; 367a30f8f8cSSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 3689371c9d4SSatish Balay bimax = b->imax; 3699371c9d4SSatish Balay bi = b->i; 3709371c9d4SSatish Balay bilen = b->ilen; 3719371c9d4SSatish Balay bj = b->j; 372a30f8f8cSSatish Balay ba = b->a; 37371730473SSatish Balay } else col += in[j] % bs; 374a30f8f8cSSatish Balay } else col = in[j]; 375db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 376db4deed7SKarl Rupp else value = v[i + j * m]; 377d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3789566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay } 381a30f8f8cSSatish Balay } else { /* off processor entry */ 3825f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 383a30f8f8cSSatish Balay if (!baij->donotstash) { 3845080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 385a30f8f8cSSatish Balay n_loc = 0; 386a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 387f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */ 388a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 389a30f8f8cSSatish Balay if (roworiented) { 390a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j]; 391a30f8f8cSSatish Balay } else { 392a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i]; 393a30f8f8cSSatish Balay } 394a30f8f8cSSatish Balay n_loc++; 395a30f8f8cSSatish Balay } 3969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE)); 397a30f8f8cSSatish Balay } 398a30f8f8cSSatish Balay } 399a30f8f8cSSatish Balay } 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401a30f8f8cSSatish Balay } 402a30f8f8cSSatish Balay 403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 404d71ae5a4SJacob Faibussowitsch { 40536bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data; 40636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 40736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 40836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 40936bd2089SBarry Smith PetscBool roworiented = a->roworiented; 41036bd2089SBarry Smith const PetscScalar *value = v; 41136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 41236bd2089SBarry Smith 41336bd2089SBarry Smith PetscFunctionBegin; 41436bd2089SBarry Smith if (col < row) { 4153ba16761SJacob Faibussowitsch if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */ 41636bd2089SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 41736bd2089SBarry Smith } 41836bd2089SBarry Smith rp = aj + ai[row]; 41936bd2089SBarry Smith ap = aa + bs2 * ai[row]; 42036bd2089SBarry Smith rmax = imax[row]; 42136bd2089SBarry Smith nrow = ailen[row]; 42236bd2089SBarry Smith value = v; 42336bd2089SBarry Smith low = 0; 42436bd2089SBarry Smith high = nrow; 42536bd2089SBarry Smith 42636bd2089SBarry Smith while (high - low > 7) { 42736bd2089SBarry Smith t = (low + high) / 2; 42836bd2089SBarry Smith if (rp[t] > col) high = t; 42936bd2089SBarry Smith else low = t; 43036bd2089SBarry Smith } 43136bd2089SBarry Smith for (i = low; i < high; i++) { 43236bd2089SBarry Smith if (rp[i] > col) break; 43336bd2089SBarry Smith if (rp[i] == col) { 43436bd2089SBarry Smith bap = ap + bs2 * i; 43536bd2089SBarry Smith if (roworiented) { 43636bd2089SBarry Smith if (is == ADD_VALUES) { 43736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 438ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 43936bd2089SBarry Smith } 44036bd2089SBarry Smith } else { 44136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 442ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 44336bd2089SBarry Smith } 44436bd2089SBarry Smith } 44536bd2089SBarry Smith } else { 44636bd2089SBarry Smith if (is == ADD_VALUES) { 44736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 448ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++; 44936bd2089SBarry Smith } 45036bd2089SBarry Smith } else { 45136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 452ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 45336bd2089SBarry Smith } 45436bd2089SBarry Smith } 45536bd2089SBarry Smith } 45636bd2089SBarry Smith goto noinsert2; 45736bd2089SBarry Smith } 45836bd2089SBarry Smith } 45936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 4605f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 46136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 4629371c9d4SSatish Balay N = nrow++ - 1; 4639371c9d4SSatish Balay high++; 46436bd2089SBarry Smith /* shift up all the later entries in this row */ 4659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 4669566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 46736bd2089SBarry Smith rp[i] = col; 46836bd2089SBarry Smith bap = ap + bs2 * i; 46936bd2089SBarry Smith if (roworiented) { 47036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 471ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 47236bd2089SBarry Smith } 47336bd2089SBarry Smith } else { 47436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 475ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 47636bd2089SBarry Smith } 47736bd2089SBarry Smith } 47836bd2089SBarry Smith noinsert2:; 47936bd2089SBarry Smith ailen[row] = nrow; 4803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48136bd2089SBarry Smith } 48236bd2089SBarry Smith 48336bd2089SBarry Smith /* 48436bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c 48536bd2089SBarry Smith */ 486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 487d71ae5a4SJacob Faibussowitsch { 48836bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 48936bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 49036bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 49136bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 49236bd2089SBarry Smith PetscBool roworiented = a->roworiented; 49336bd2089SBarry Smith const PetscScalar *value = v; 49436bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap; 49536bd2089SBarry Smith 49636bd2089SBarry Smith PetscFunctionBegin; 49736bd2089SBarry Smith rp = aj + ai[row]; 49836bd2089SBarry Smith ap = aa + bs2 * ai[row]; 49936bd2089SBarry Smith rmax = imax[row]; 50036bd2089SBarry Smith nrow = ailen[row]; 50136bd2089SBarry Smith low = 0; 50236bd2089SBarry Smith high = nrow; 50336bd2089SBarry Smith value = v; 50436bd2089SBarry Smith while (high - low > 7) { 50536bd2089SBarry Smith t = (low + high) / 2; 50636bd2089SBarry Smith if (rp[t] > col) high = t; 50736bd2089SBarry Smith else low = t; 50836bd2089SBarry Smith } 50936bd2089SBarry Smith for (i = low; i < high; i++) { 51036bd2089SBarry Smith if (rp[i] > col) break; 51136bd2089SBarry Smith if (rp[i] == col) { 51236bd2089SBarry Smith bap = ap + bs2 * i; 51336bd2089SBarry Smith if (roworiented) { 51436bd2089SBarry Smith if (is == ADD_VALUES) { 51536bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 516ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 51736bd2089SBarry Smith } 51836bd2089SBarry Smith } else { 51936bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 520ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 52136bd2089SBarry Smith } 52236bd2089SBarry Smith } 52336bd2089SBarry Smith } else { 52436bd2089SBarry Smith if (is == ADD_VALUES) { 52536bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 526ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 52736bd2089SBarry Smith bap += bs; 52836bd2089SBarry Smith } 52936bd2089SBarry Smith } else { 53036bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 531ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 53236bd2089SBarry Smith bap += bs; 53336bd2089SBarry Smith } 53436bd2089SBarry Smith } 53536bd2089SBarry Smith } 53636bd2089SBarry Smith goto noinsert2; 53736bd2089SBarry Smith } 53836bd2089SBarry Smith } 53936bd2089SBarry Smith if (nonew == 1) goto noinsert2; 5405f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 54136bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 5429371c9d4SSatish Balay N = nrow++ - 1; 5439371c9d4SSatish Balay high++; 54436bd2089SBarry Smith /* shift up all the later entries in this row */ 5459566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 5469566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 54736bd2089SBarry Smith rp[i] = col; 54836bd2089SBarry Smith bap = ap + bs2 * i; 54936bd2089SBarry Smith if (roworiented) { 55036bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 551ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 55236bd2089SBarry Smith } 55336bd2089SBarry Smith } else { 55436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) { 555ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 55636bd2089SBarry Smith } 55736bd2089SBarry Smith } 55836bd2089SBarry Smith noinsert2:; 55936bd2089SBarry Smith ailen[row] = nrow; 5603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56136bd2089SBarry Smith } 56236bd2089SBarry Smith 56336bd2089SBarry Smith /* 56436bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information 56536bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ() 56636bd2089SBarry Smith */ 56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv) 568d71ae5a4SJacob Faibussowitsch { 5690880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 570f15d580aSBarry Smith const MatScalar *value; 571f15d580aSBarry Smith MatScalar *barray = baij->barray; 572ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular; 573899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 574476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 575476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 5760880e062SHong Zhang 577a30f8f8cSSatish Balay PetscFunctionBegin; 5780880e062SHong Zhang if (!barray) { 5799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 5800880e062SHong Zhang baij->barray = barray; 5810880e062SHong Zhang } 5820880e062SHong Zhang 5830880e062SHong Zhang if (roworiented) { 5840880e062SHong Zhang stepval = (n - 1) * bs; 5850880e062SHong Zhang } else { 5860880e062SHong Zhang stepval = (m - 1) * bs; 5870880e062SHong Zhang } 5880880e062SHong Zhang for (i = 0; i < m; i++) { 5890880e062SHong Zhang if (im[i] < 0) continue; 5906bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 5910880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) { 5920880e062SHong Zhang row = im[i] - rstart; 5930880e062SHong Zhang for (j = 0; j < n; j++) { 594f3f98c53SJed Brown if (im[i] > in[j]) { 595f3f98c53SJed Brown if (ignore_ltriangular) continue; /* ignore lower triangular blocks */ 596e32f2f54SBarry Smith else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 597f3f98c53SJed Brown } 5980880e062SHong Zhang /* If NumCol = 1 then a copy is not required */ 5990880e062SHong Zhang if ((roworiented) && (n == 1)) { 600f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 6010880e062SHong Zhang } else if ((!roworiented) && (m == 1)) { 602f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 6030880e062SHong Zhang } else { /* Here a copy is required */ 6040880e062SHong Zhang if (roworiented) { 6050880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs; 6060880e062SHong Zhang } else { 6070880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs; 6080880e062SHong Zhang } 6090880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) { 610ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 6110880e062SHong Zhang } 6120880e062SHong Zhang barray -= bs2; 6130880e062SHong Zhang } 6140880e062SHong Zhang 6150880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) { 6160880e062SHong Zhang col = in[j] - cstart; 6179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 618f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 619f7d195e4SLawrence Mitchell continue; 620f7d195e4SLawrence Mitchell } else { 621f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 6220880e062SHong Zhang if (mat->was_assembled) { 62348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 6240880e062SHong Zhang 6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6260880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 6279371c9d4SSatish Balay { 6289371c9d4SSatish Balay PetscInt data; 629eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 63008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6310880e062SHong Zhang } 6320880e062SHong Zhang #else 63308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 6340880e062SHong Zhang #endif 6350880e062SHong Zhang #endif 6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE) 637eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 6380880e062SHong Zhang col = (col - 1) / bs; 6390880e062SHong Zhang #else 6400880e062SHong Zhang col = (baij->colmap[in[j]] - 1) / bs; 6410880e062SHong Zhang #endif 6420880e062SHong Zhang if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 6439566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat)); 6440880e062SHong Zhang col = in[j]; 6450880e062SHong Zhang } 64626fbe8dcSKarl Rupp } else col = in[j]; 6479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 6480880e062SHong Zhang } 6490880e062SHong Zhang } 6500880e062SHong Zhang } else { 6515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 6520880e062SHong Zhang if (!baij->donotstash) { 6530880e062SHong Zhang if (roworiented) { 6549566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6550880e062SHong Zhang } else { 6569566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6570880e062SHong Zhang } 6580880e062SHong Zhang } 6590880e062SHong Zhang } 6600880e062SHong Zhang } 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 662a30f8f8cSSatish Balay } 663a30f8f8cSSatish Balay 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 665d71ae5a4SJacob Faibussowitsch { 666f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 667d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 668d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 669a30f8f8cSSatish Balay 670a30f8f8cSSatish Balay PetscFunctionBegin; 671a30f8f8cSSatish Balay for (i = 0; i < m; i++) { 67254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 67354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 674a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 675a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 676a30f8f8cSSatish Balay for (j = 0; j < n; j++) { 67754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 679a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 680a30f8f8cSSatish Balay col = idxn[j] - bscstart; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 682a30f8f8cSSatish Balay } else { 68348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 685eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 686a30f8f8cSSatish Balay data--; 687a30f8f8cSSatish Balay #else 688a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 689a30f8f8cSSatish Balay #endif 690a30f8f8cSSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 691a30f8f8cSSatish Balay else { 692a30f8f8cSSatish Balay col = data + idxn[j] % bs; 6939566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 694a30f8f8cSSatish Balay } 695a30f8f8cSSatish Balay } 696a30f8f8cSSatish Balay } 697f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 698a30f8f8cSSatish Balay } 6993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700a30f8f8cSSatish Balay } 701a30f8f8cSSatish Balay 70266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm) 703d71ae5a4SJacob Faibussowitsch { 704a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 705a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2; 706a30f8f8cSSatish Balay 707a30f8f8cSSatish Balay PetscFunctionBegin; 708a30f8f8cSSatish Balay if (baij->size == 1) { 7099566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm)); 710a30f8f8cSSatish Balay } else { 711a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 7129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2)); 7139566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2)); 7149371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7159371c9d4SSatish Balay lnorm2++; /* squar power of norm(A) */ 7169566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2)); 7179371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2); 7189371c9d4SSatish Balay lnorm2--; /* squar power of norm(B) */ 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2)); 7220b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */ 7230b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data; 7240b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data; 7250b8dc8d2SHong Zhang PetscReal *rsum, *rsum2, vabs; 726899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz; 727d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs; 7280b8dc8d2SHong Zhang MatScalar *v; 7290b8dc8d2SHong Zhang 7309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2)); 7319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rsum, mat->cmap->N)); 7320b8dc8d2SHong Zhang /* Amat */ 7339371c9d4SSatish Balay v = amat->a; 7349371c9d4SSatish Balay jj = amat->j; 7350b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7360b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7370b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow]; 7380b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7399371c9d4SSatish Balay gcol = bs * (rstart + *jj); 7409371c9d4SSatish Balay jj++; 7410b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7420b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7439371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7449371c9d4SSatish Balay v++; 7450b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7460b8dc8d2SHong Zhang /* non-diagonal block */ 7470b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs; 7480b8dc8d2SHong Zhang } 7490b8dc8d2SHong Zhang } 7500b8dc8d2SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7520b8dc8d2SHong Zhang } 7530b8dc8d2SHong Zhang /* Bmat */ 7549371c9d4SSatish Balay v = bmat->a; 7559371c9d4SSatish Balay jj = bmat->j; 7560b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) { 7570b8dc8d2SHong Zhang grow = bs * (rstart + brow); 7580b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow]; 7590b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) { 7609371c9d4SSatish Balay gcol = bs * garray[*jj]; 7619371c9d4SSatish Balay jj++; 7620b8dc8d2SHong Zhang for (col = 0; col < bs; col++) { 7630b8dc8d2SHong Zhang for (row = 0; row < bs; row++) { 7649371c9d4SSatish Balay vabs = PetscAbsScalar(*v); 7659371c9d4SSatish Balay v++; 7660b8dc8d2SHong Zhang rsum[gcol + col] += vabs; 7670b8dc8d2SHong Zhang rsum[grow + row] += vabs; 7680b8dc8d2SHong Zhang } 7690b8dc8d2SHong Zhang } 7700b8dc8d2SHong Zhang } 7719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs)); 7720b8dc8d2SHong Zhang } 7731c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7740b8dc8d2SHong Zhang *norm = 0.0; 775d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) { 7760b8dc8d2SHong Zhang if (rsum2[col] > *norm) *norm = rsum2[col]; 7770b8dc8d2SHong Zhang } 7789566063dSJacob Faibussowitsch PetscCall(PetscFree2(rsum, rsum2)); 779f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet"); 780a30f8f8cSSatish Balay } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782a30f8f8cSSatish Balay } 783a30f8f8cSSatish Balay 78466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode) 785d71ae5a4SJacob Faibussowitsch { 786a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 7871302d50aSBarry Smith PetscInt nstash, reallocs; 788a30f8f8cSSatish Balay 789a30f8f8cSSatish Balay PetscFunctionBegin; 7903ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 791a30f8f8cSSatish Balay 7929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 7949566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7959566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7979566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799a30f8f8cSSatish Balay } 800a30f8f8cSSatish Balay 80166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode) 802d71ae5a4SJacob Faibussowitsch { 803a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 804a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data; 80513f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 806e44c0bd4SBarry Smith PetscInt *row, *col; 807ace3abfcSBarry Smith PetscBool other_disassembled; 80813f74950SBarry Smith PetscMPIInt n; 809ace3abfcSBarry Smith PetscBool r1, r2, r3; 810a30f8f8cSSatish Balay MatScalar *val; 811a30f8f8cSSatish Balay 81291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 813a30f8f8cSSatish Balay PetscFunctionBegin; 8144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 815a30f8f8cSSatish Balay while (1) { 8169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 817a30f8f8cSSatish Balay if (!flg) break; 818a30f8f8cSSatish Balay 819a30f8f8cSSatish Balay for (i = 0; i < n;) { 820a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 82126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 82226fbe8dcSKarl Rupp if (row[j] != rstart) break; 82326fbe8dcSKarl Rupp } 824a30f8f8cSSatish Balay if (j < n) ncols = j - i; 825a30f8f8cSSatish Balay else ncols = n - i; 826a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 8279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 828a30f8f8cSSatish Balay i = j; 829a30f8f8cSSatish Balay } 830a30f8f8cSSatish Balay } 8319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 832a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 833a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 834a30f8f8cSSatish Balay restore the original flags */ 835a30f8f8cSSatish Balay r1 = baij->roworiented; 836a30f8f8cSSatish Balay r2 = a->roworiented; 83791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 83826fbe8dcSKarl Rupp 839a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 840a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 84126fbe8dcSKarl Rupp 84291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */ 843a30f8f8cSSatish Balay while (1) { 8449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 845a30f8f8cSSatish Balay if (!flg) break; 846a30f8f8cSSatish Balay 847a30f8f8cSSatish Balay for (i = 0; i < n;) { 848a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 84926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 85026fbe8dcSKarl Rupp if (row[j] != rstart) break; 85126fbe8dcSKarl Rupp } 852a30f8f8cSSatish Balay if (j < n) ncols = j - i; 853a30f8f8cSSatish Balay else ncols = n - i; 8549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 855a30f8f8cSSatish Balay i = j; 856a30f8f8cSSatish Balay } 857a30f8f8cSSatish Balay } 8589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 85926fbe8dcSKarl Rupp 860a30f8f8cSSatish Balay baij->roworiented = r1; 861a30f8f8cSSatish Balay a->roworiented = r2; 86226fbe8dcSKarl Rupp 86391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */ 864a30f8f8cSSatish Balay } 865a30f8f8cSSatish Balay 8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 8679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 868a30f8f8cSSatish Balay 869a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 8706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 871a30f8f8cSSatish Balay /* 872a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 873a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 874a30f8f8cSSatish Balay */ 875a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 8765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 87748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat)); 878a30f8f8cSSatish Balay } 879a30f8f8cSSatish Balay 8809371c9d4SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ } 8819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 8829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 883a30f8f8cSSatish Balay 8849566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 88526fbe8dcSKarl Rupp 886f4259b30SLisandro Dalcin baij->rowvalues = NULL; 8874f9cfa9eSBarry Smith 8884f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 8894f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 890e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 892e56f5c9eSBarry Smith } 8933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 894a30f8f8cSSatish Balay } 895a30f8f8cSSatish Balay 896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 8979804daf3SBarry Smith #include <petscdraw.h> 898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 899d71ae5a4SJacob Faibussowitsch { 900a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 901d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 9027da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 903ace3abfcSBarry Smith PetscBool iascii, isdraw; 904b0a32e0cSBarry Smith PetscViewer sviewer; 905f3ef73ceSBarry Smith PetscViewerFormat format; 906a30f8f8cSSatish Balay 907a30f8f8cSSatish Balay PetscFunctionBegin; 9089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 91032077d6dSBarry Smith if (iascii) { 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 912456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 913a30f8f8cSSatish Balay MatInfo info; 9149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9179371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9189371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9269566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 928fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 931c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 9323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 933a30f8f8cSSatish Balay } 934a30f8f8cSSatish Balay } 935a30f8f8cSSatish Balay 936a30f8f8cSSatish Balay if (isdraw) { 937b0a32e0cSBarry Smith PetscDraw draw; 938ace3abfcSBarry Smith PetscBool isnull; 9399566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9409566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 9413ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 942a30f8f8cSSatish Balay } 943a30f8f8cSSatish Balay 9447da1fb6eSBarry Smith { 945a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 946a30f8f8cSSatish Balay Mat A; 94765d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 94865d70643SHong Zhang Mat_SeqBAIJ *Bloc; 949d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 950a30f8f8cSSatish Balay MatScalar *a; 9513e219373SBarry Smith const char *matname; 952a30f8f8cSSatish Balay 953f204ca49SKris Buschelman /* Should this be the same type as mat? */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 955dd400576SPatrick Sanan if (rank == 0) { 9569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 957a30f8f8cSSatish Balay } else { 9589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 959a30f8f8cSSatish Balay } 9609566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ)); 9619566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 9629566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay /* copy over the A part */ 96565d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data; 9669371c9d4SSatish Balay ai = Aloc->i; 9679371c9d4SSatish Balay aj = Aloc->j; 9689371c9d4SSatish Balay a = Aloc->a; 9699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 970a30f8f8cSSatish Balay 971a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 972e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 97326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 974a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 975e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs; 976a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 97826fbe8dcSKarl Rupp col++; 97926fbe8dcSKarl Rupp a += bs; 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay } 982a30f8f8cSSatish Balay } 983a30f8f8cSSatish Balay /* copy over the B part */ 98465d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data; 9859371c9d4SSatish Balay ai = Bloc->i; 9869371c9d4SSatish Balay aj = Bloc->j; 9879371c9d4SSatish Balay a = Bloc->a; 988a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) { 989e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i); 99026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 991a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 992a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs; 993a30f8f8cSSatish Balay for (k = 0; k < bs; k++) { 9949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 99526fbe8dcSKarl Rupp col++; 99626fbe8dcSKarl Rupp a += bs; 997a30f8f8cSSatish Balay } 998a30f8f8cSSatish Balay } 999a30f8f8cSSatish Balay } 10009566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 1003a30f8f8cSSatish Balay /* 1004a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 1005b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 1006a30f8f8cSSatish Balay */ 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 100823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1009dd400576SPatrick Sanan if (rank == 0) { 101023a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname)); 10119566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer)); 1012a30f8f8cSSatish Balay } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10149566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 1016a30f8f8cSSatish Balay } 10173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1018a30f8f8cSSatish Balay } 1019a30f8f8cSSatish Balay 1020618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1021618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary 1022d1654148SHong Zhang 102366976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer) 1024d71ae5a4SJacob Faibussowitsch { 1025ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1026a30f8f8cSSatish Balay 1027a30f8f8cSSatish Balay PetscFunctionBegin; 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 10319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1032d1654148SHong Zhang if (iascii || isdraw || issocket) { 10339566063dSJacob Faibussowitsch PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer)); 10341baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer)); 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1036a30f8f8cSSatish Balay } 1037a30f8f8cSSatish Balay 1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy) 1039d71ae5a4SJacob Faibussowitsch { 1040547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1041eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 10426de40e93SBarry Smith PetscScalar *from; 10436de40e93SBarry Smith const PetscScalar *x; 1044547795f9SHong Zhang 1045547795f9SHong Zhang PetscFunctionBegin; 1046547795f9SHong Zhang /* diagonal part */ 10479566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1048629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1049629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1050629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1051547795f9SHong Zhang 1052547795f9SHong Zhang /* subdiagonal part */ 10535f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 10549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1055547795f9SHong Zhang 1056547795f9SHong Zhang /* copy x into the vec slvec0 */ 10579566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1059547795f9SHong Zhang 10609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1063547795f9SHong Zhang 10649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1066547795f9SHong Zhang /* supperdiagonal part */ 10679566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1069547795f9SHong Zhang } 1070547795f9SHong Zhang 107166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy) 1072d71ae5a4SJacob Faibussowitsch { 1073a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1074eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1075d9ca1df4SBarry Smith PetscScalar *from; 1076d9ca1df4SBarry Smith const PetscScalar *x; 1077a9d4b620SHong Zhang 1078a9d4b620SHong Zhang PetscFunctionBegin; 1079a9d4b620SHong Zhang /* diagonal part */ 10809566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a)); 1081629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */ 1082629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1083629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1084a9d4b620SHong Zhang 1085a9d4b620SHong Zhang /* subdiagonal part */ 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1087fc165ae2SBarry Smith 1088a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 10899566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 10909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 1091a9d4b620SHong Zhang 10929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 10939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 10949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 1095fc165ae2SBarry Smith 10969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 10979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1098a9d4b620SHong Zhang /* supperdiagonal part */ 10999566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy)); 11003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1101a9d4b620SHong Zhang } 1102a9d4b620SHong Zhang 110366976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX) 110466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz) 1105d71ae5a4SJacob Faibussowitsch { 1106eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1107eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs; 1108629a200eSBarry Smith PetscScalar *from; 1109eb1ec7c1SStefano Zampini const PetscScalar *x; 1110eb1ec7c1SStefano Zampini 1111eb1ec7c1SStefano Zampini PetscFunctionBegin; 1112eb1ec7c1SStefano Zampini /* diagonal part */ 11139566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1114629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1115629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1116eb1ec7c1SStefano Zampini 1117eb1ec7c1SStefano Zampini /* subdiagonal part */ 11185f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name); 11199566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b)); 1120eb1ec7c1SStefano Zampini 1121eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */ 11229566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1126eb1ec7c1SStefano Zampini 11279566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1130eb1ec7c1SStefano Zampini 1131eb1ec7c1SStefano Zampini /* supperdiagonal part */ 11329566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1134eb1ec7c1SStefano Zampini } 113566976f2fSJacob Faibussowitsch #endif 1136eb1ec7c1SStefano Zampini 113766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1138d71ae5a4SJacob Faibussowitsch { 1139de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1140d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs; 1141629a200eSBarry Smith PetscScalar *from; 1142d9ca1df4SBarry Smith const PetscScalar *x; 1143a9d4b620SHong Zhang 1144a9d4b620SHong Zhang PetscFunctionBegin; 1145a9d4b620SHong Zhang /* diagonal part */ 11469566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a)); 1147629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b)); 1148629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b)); 1149a9d4b620SHong Zhang 1150a9d4b620SHong Zhang /* subdiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b)); 1152a9d4b620SHong Zhang 1153a9d4b620SHong Zhang /* copy x into the vec slvec0 */ 11549566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from)); 11559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 11569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 11579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from)); 1158a9d4b620SHong Zhang 11599566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 11609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 11619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD)); 1162a9d4b620SHong Zhang 1163a9d4b620SHong Zhang /* supperdiagonal part */ 11649566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz)); 11653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1166a9d4b620SHong Zhang } 1167a9d4b620SHong Zhang 1168a30f8f8cSSatish Balay /* 1169a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1170a30f8f8cSSatish Balay diagonal block 1171a30f8f8cSSatish Balay */ 117266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v) 1173d71ae5a4SJacob Faibussowitsch { 1174a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1175a30f8f8cSSatish Balay 1176a30f8f8cSSatish Balay PetscFunctionBegin; 117708401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */ 11789566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1180a30f8f8cSSatish Balay } 1181a30f8f8cSSatish Balay 118266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa) 1183d71ae5a4SJacob Faibussowitsch { 1184a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1185a30f8f8cSSatish Balay 1186a30f8f8cSSatish Balay PetscFunctionBegin; 11879566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11889566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1190a30f8f8cSSatish Balay } 1191a30f8f8cSSatish Balay 119266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1193d71ae5a4SJacob Faibussowitsch { 1194d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 1195d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1196d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1197d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1198899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs; 1199d0d4cfc2SHong Zhang 1200a30f8f8cSSatish Balay PetscFunctionBegin; 12015f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1202d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE; 1203d0d4cfc2SHong Zhang 1204d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) { 1205d0d4cfc2SHong Zhang /* 1206d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row. 1207d0d4cfc2SHong Zhang */ 1208d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data; 1209d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data; 1210d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp; 1211d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) { 1212d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */ 121326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1214d0d4cfc2SHong Zhang } 12159566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1216d0d4cfc2SHong Zhang } 1217d0d4cfc2SHong Zhang 12185f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 1219d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */ 1220d0d4cfc2SHong Zhang 12219371c9d4SSatish Balay pvA = &vworkA; 12229371c9d4SSatish Balay pcA = &cworkA; 12239371c9d4SSatish Balay pvB = &vworkB; 12249371c9d4SSatish Balay pcB = &cworkB; 12259371c9d4SSatish Balay if (!v) { 12269371c9d4SSatish Balay pvA = NULL; 12279371c9d4SSatish Balay pvB = NULL; 12289371c9d4SSatish Balay } 12299371c9d4SSatish Balay if (!idx) { 12309371c9d4SSatish Balay pcA = NULL; 12319371c9d4SSatish Balay if (!v) pcB = NULL; 12329371c9d4SSatish Balay } 12339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 12349566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1235d0d4cfc2SHong Zhang nztot = nzA + nzB; 1236d0d4cfc2SHong Zhang 1237d0d4cfc2SHong Zhang cmap = mat->garray; 1238d0d4cfc2SHong Zhang if (v || idx) { 1239d0d4cfc2SHong Zhang if (nztot) { 1240d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */ 1241d0d4cfc2SHong Zhang PetscInt imark = -1; 1242d0d4cfc2SHong Zhang if (v) { 1243d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues; 1244d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 1245d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1246d0d4cfc2SHong Zhang else break; 1247d0d4cfc2SHong Zhang } 1248d0d4cfc2SHong Zhang imark = i; 1249d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1250d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1251d0d4cfc2SHong Zhang } 1252d0d4cfc2SHong Zhang if (idx) { 1253d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices; 1254d0d4cfc2SHong Zhang if (imark > -1) { 1255ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1256d0d4cfc2SHong Zhang } else { 1257d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) { 125826fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1259d0d4cfc2SHong Zhang else break; 1260d0d4cfc2SHong Zhang } 1261d0d4cfc2SHong Zhang imark = i; 1262d0d4cfc2SHong Zhang } 1263d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1264d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1265d0d4cfc2SHong Zhang } 1266d0d4cfc2SHong Zhang } else { 1267f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1268f4259b30SLisandro Dalcin if (v) *v = NULL; 1269d0d4cfc2SHong Zhang } 1270d0d4cfc2SHong Zhang } 1271d0d4cfc2SHong Zhang *nz = nztot; 12729566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 12739566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 12743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1275a30f8f8cSSatish Balay } 1276a30f8f8cSSatish Balay 127766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1278d71ae5a4SJacob Faibussowitsch { 1279a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1280a30f8f8cSSatish Balay 1281a30f8f8cSSatish Balay PetscFunctionBegin; 12825f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 1283a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 12843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285a30f8f8cSSatish Balay } 1286a30f8f8cSSatish Balay 128766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A) 1288d71ae5a4SJacob Faibussowitsch { 1289d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1290d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1291d0d4cfc2SHong Zhang 1292d0d4cfc2SHong Zhang PetscFunctionBegin; 1293d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE; 12943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1295d0d4cfc2SHong Zhang } 129666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A) 1297d71ae5a4SJacob Faibussowitsch { 1298d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1299d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1300d0d4cfc2SHong Zhang 1301d0d4cfc2SHong Zhang PetscFunctionBegin; 1302d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE; 13033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1304d0d4cfc2SHong Zhang } 1305d0d4cfc2SHong Zhang 130666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat) 1307d71ae5a4SJacob Faibussowitsch { 13085f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 13095f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 13102726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data; 13112726fb6dSPierre Jolivet 13129566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 13139566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B)); 13145f80ce2aSJacob Faibussowitsch } 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13162726fb6dSPierre Jolivet } 13172726fb6dSPierre Jolivet 131866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A) 1319d71ae5a4SJacob Faibussowitsch { 132099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 132199cafbc1SBarry Smith 132299cafbc1SBarry Smith PetscFunctionBegin; 13239566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 13249566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132699cafbc1SBarry Smith } 132799cafbc1SBarry Smith 132866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A) 1329d71ae5a4SJacob Faibussowitsch { 133099cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 133199cafbc1SBarry Smith 133299cafbc1SBarry Smith PetscFunctionBegin; 13339566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 13349566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 13353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133699cafbc1SBarry Smith } 133799cafbc1SBarry Smith 13387dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ() 133936032a97SHong Zhang Input: isrow - distributed(parallel), 134036032a97SHong Zhang iscol_local - locally owned (seq) 134136032a97SHong Zhang */ 134266976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg) 1343d71ae5a4SJacob Faibussowitsch { 13448f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch; 13458f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2; 134636032a97SHong Zhang 134736032a97SHong Zhang PetscFunctionBegin; 134866976f2fSJacob Faibussowitsch *flg = PETSC_FALSE; 13499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1)); 13509566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2)); 135166976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS); 13528f46ffcaSHong Zhang 13539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1)); 13549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2)); 13558f46ffcaSHong Zhang 13569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1)); 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2)); 13589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1)); 13599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2)); 13609566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1)); 13619566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2)); 13628f46ffcaSHong Zhang 13638f46ffcaSHong Zhang nmatch = 0; 13648f46ffcaSHong Zhang k = 0; 13658f46ffcaSHong Zhang for (i = 0; i < sz1; i++) { 13668f46ffcaSHong Zhang for (j = k; j < sz2; j++) { 13678f46ffcaSHong Zhang if (a1[i] == a2[j]) { 13689371c9d4SSatish Balay k = j; 13699371c9d4SSatish Balay nmatch++; 13708f46ffcaSHong Zhang break; 13718f46ffcaSHong Zhang } 13728f46ffcaSHong Zhang } 13738f46ffcaSHong Zhang } 13749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1)); 13759566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2)); 13769566063dSJacob Faibussowitsch PetscCall(PetscFree(a1)); 13779566063dSJacob Faibussowitsch PetscCall(PetscFree(a2)); 13781098a8e8SHong Zhang if (nmatch < sz1) { 13791098a8e8SHong Zhang *flg = PETSC_FALSE; 13801098a8e8SHong Zhang } else { 13811098a8e8SHong Zhang *flg = PETSC_TRUE; 13821098a8e8SHong Zhang } 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13848f46ffcaSHong Zhang } 138536032a97SHong Zhang 138666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1387d71ae5a4SJacob Faibussowitsch { 1388*fdfbdca6SPierre Jolivet Mat C[2]; 1389*fdfbdca6SPierre Jolivet IS iscol_local, isrow_local; 1390*fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize; 1391*fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE; 139236032a97SHong Zhang 139336032a97SHong Zhang PetscFunctionBegin; 13949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1395*fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize)); 139636032a97SHong Zhang if (call == MAT_REUSE_MATRIX) { 13979566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 13985f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 139936032a97SHong Zhang } else { 14009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 14019566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted)); 1402*fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted"); 14038f46ffcaSHong Zhang } 1404*fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal)); 1405*fdfbdca6SPierre Jolivet if (!isequal) { 1406*fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local)); 1407*fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local); 1408*fdfbdca6SPierre Jolivet if (!isidentity) { 1409*fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) { 1410*fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local)); 1411*fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1412*fdfbdca6SPierre Jolivet } else { 1413*fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local)); 1414*fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted)); 1415*fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted"); 1416*fdfbdca6SPierre Jolivet } 1417*fdfbdca6SPierre Jolivet } 1418*fdfbdca6SPierre Jolivet } 14197dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */ 1420*fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity))); 1421*fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 14228f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) { 1423*fdfbdca6SPierre Jolivet IS intersect; 1424*fdfbdca6SPierre Jolivet PetscInt ni; 1425*fdfbdca6SPierre Jolivet 1426*fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect)); 1427*fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni)); 1428*fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect)); 1429*fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni); 1430*fdfbdca6SPierre Jolivet } 1431*fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE)); 1432*fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1)); 1433*fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN)); 1434*fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1435*fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat)); 1436*fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN)); 1437*fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C)); 1438*fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1)); 1439*fdfbdca6SPierre Jolivet } 1440*fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) { 1441*fdfbdca6SPierre Jolivet if (!isequal && !isidentity) { 1442*fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local)); 1443*fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local)); 1444*fdfbdca6SPierre Jolivet } 14459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 14469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 14478f46ffcaSHong Zhang } 14483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14498f46ffcaSHong Zhang } 14508f46ffcaSHong Zhang 145166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A) 1452d71ae5a4SJacob Faibussowitsch { 1453a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data; 1454a30f8f8cSSatish Balay 1455a30f8f8cSSatish Balay PetscFunctionBegin; 14569566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14579566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1459a30f8f8cSSatish Balay } 1460a30f8f8cSSatish Balay 146166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1462d71ae5a4SJacob Faibussowitsch { 1463a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data; 1464a30f8f8cSSatish Balay Mat A = a->A, B = a->B; 14653966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1466a30f8f8cSSatish Balay 1467a30f8f8cSSatish Balay PetscFunctionBegin; 1468d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 146926fbe8dcSKarl Rupp 14709566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 147126fbe8dcSKarl Rupp 14729371c9d4SSatish Balay isend[0] = info->nz_used; 14739371c9d4SSatish Balay isend[1] = info->nz_allocated; 14749371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14759371c9d4SSatish Balay isend[3] = info->memory; 14769371c9d4SSatish Balay isend[4] = info->mallocs; 147726fbe8dcSKarl Rupp 14789566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 147926fbe8dcSKarl Rupp 14809371c9d4SSatish Balay isend[0] += info->nz_used; 14819371c9d4SSatish Balay isend[1] += info->nz_allocated; 14829371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14839371c9d4SSatish Balay isend[3] += info->memory; 14849371c9d4SSatish Balay isend[4] += info->mallocs; 1485a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1486a30f8f8cSSatish Balay info->nz_used = isend[0]; 1487a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1488a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1489a30f8f8cSSatish Balay info->memory = isend[3]; 1490a30f8f8cSSatish Balay info->mallocs = isend[4]; 1491a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 149326fbe8dcSKarl Rupp 1494a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1495a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1496a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1497a30f8f8cSSatish Balay info->memory = irecv[3]; 1498a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1499a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 15001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 150126fbe8dcSKarl Rupp 1502a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1503a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1504a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1505a30f8f8cSSatish Balay info->memory = irecv[3]; 1506a30f8f8cSSatish Balay info->mallocs = irecv[4]; 150798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 1508a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1509a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1510a30f8f8cSSatish Balay info->factor_mallocs = 0; 15113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1512a30f8f8cSSatish Balay } 1513a30f8f8cSSatish Balay 151466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg) 1515d71ae5a4SJacob Faibussowitsch { 1516a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1517d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data; 1518a30f8f8cSSatish Balay 1519a30f8f8cSSatish Balay PetscFunctionBegin; 1520e98b92d7SKris Buschelman switch (op) { 1521512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1522e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 152328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1524a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1525c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1526e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 152743674050SBarry Smith MatCheckPreallocated(A, 1); 15289566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15299566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1530e98b92d7SKris Buschelman break; 1531e98b92d7SKris Buschelman case MAT_ROW_ORIENTED: 153243674050SBarry Smith MatCheckPreallocated(A, 1); 15334e0d8c25SBarry Smith a->roworiented = flg; 153426fbe8dcSKarl Rupp 15359566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15369566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 1537e98b92d7SKris Buschelman break; 15388c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1539d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1540d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1541d71ae5a4SJacob Faibussowitsch break; 1542d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1543d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1544d71ae5a4SJacob Faibussowitsch break; 1545d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE: 1546d71ae5a4SJacob Faibussowitsch a->ht_flag = flg; 1547d71ae5a4SJacob Faibussowitsch break; 1548d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN: 1549d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1550d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 15510f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1552eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */ 1553547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian; 1554eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian; 1555eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 1556eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 1557b94d7dedSBarry Smith A->symmetric = PETSC_BOOL3_FALSE; 1558eb1ec7c1SStefano Zampini } 15590f2140c7SStefano Zampini #endif 1560eeffb40dSHong Zhang break; 1561ffa07934SHong Zhang case MAT_SPD: 1562d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC: 1563d71ae5a4SJacob Faibussowitsch MatCheckPreallocated(A, 1); 1564d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1565eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1566eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */ 1567eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ; 1568eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ; 1569eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ; 1570eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ; 1571eb1ec7c1SStefano Zampini } 1572eb1ec7c1SStefano Zampini #endif 1573eeffb40dSHong Zhang break; 157477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 157543674050SBarry Smith MatCheckPreallocated(A, 1); 15769566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 1577eeffb40dSHong Zhang break; 15789a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1579b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 15805f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric"); 15819566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 158277e54ba9SKris Buschelman break; 1583d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 1584d71ae5a4SJacob Faibussowitsch break; 1585d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR: 1586d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1587d71ae5a4SJacob Faibussowitsch break; 1588d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR: 1589d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg; 1590d71ae5a4SJacob Faibussowitsch break; 1591d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR: 1592d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg; 1593d71ae5a4SJacob Faibussowitsch break; 1594d71ae5a4SJacob Faibussowitsch default: 1595d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 1596a30f8f8cSSatish Balay } 15973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1598a30f8f8cSSatish Balay } 1599a30f8f8cSSatish Balay 160066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B) 1601d71ae5a4SJacob Faibussowitsch { 1602a30f8f8cSSatish Balay PetscFunctionBegin; 16037fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 1604cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 16059566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B)); 1606cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 16079566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN)); 1608fc4dec0aSBarry Smith } 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1610a30f8f8cSSatish Balay } 1611a30f8f8cSSatish Balay 161266976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr) 1613d71ae5a4SJacob Faibussowitsch { 1614a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data; 1615a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B; 16165e90f9d9SHong Zhang PetscInt nv, m, n; 1617ace3abfcSBarry Smith PetscBool flg; 1618a30f8f8cSSatish Balay 1619a30f8f8cSSatish Balay PetscFunctionBegin; 1620a30f8f8cSSatish Balay if (ll != rr) { 16219566063dSJacob Faibussowitsch PetscCall(VecEqual(ll, rr, &flg)); 16225f80ce2aSJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same"); 1623a30f8f8cSSatish Balay } 16243ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS); 1625b3bf805bSHong Zhang 16269566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 16275f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n); 1628b3bf805bSHong Zhang 16299566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv)); 16305f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size"); 16315e90f9d9SHong Zhang 16329566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16335e90f9d9SHong Zhang 16345e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */ 1635dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16365e90f9d9SHong Zhang 16375e90f9d9SHong Zhang /* scale the diagonal part */ 1638dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 1639a30f8f8cSSatish Balay 16405e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */ 16419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1642dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1644a30f8f8cSSatish Balay } 1645a30f8f8cSSatish Balay 164666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A) 1647d71ae5a4SJacob Faibussowitsch { 1648f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 1649a30f8f8cSSatish Balay 1650a30f8f8cSSatish Balay PetscFunctionBegin; 16519566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 16523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1653a30f8f8cSSatish Balay } 1654a30f8f8cSSatish Balay 16556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *); 1656a30f8f8cSSatish Balay 165766976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag) 1658d71ae5a4SJacob Faibussowitsch { 1659a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data; 1660a30f8f8cSSatish Balay Mat a, b, c, d; 1661ace3abfcSBarry Smith PetscBool flg; 1662a30f8f8cSSatish Balay 1663a30f8f8cSSatish Balay PetscFunctionBegin; 16649371c9d4SSatish Balay a = matA->A; 16659371c9d4SSatish Balay b = matA->B; 16669371c9d4SSatish Balay c = matB->A; 16679371c9d4SSatish Balay d = matB->B; 1668a30f8f8cSSatish Balay 16699566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 167048a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 16711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 16723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1673a30f8f8cSSatish Balay } 1674a30f8f8cSSatish Balay 167566976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str) 1676d71ae5a4SJacob Faibussowitsch { 16774c7a3774SStefano Zampini PetscBool isbaij; 16783c896bc6SHong Zhang 16793c896bc6SHong Zhang PetscFunctionBegin; 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, "")); 16815f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name); 16823c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 16833c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 16849566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 16859566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 16869566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 16873c896bc6SHong Zhang } else { 16884c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 16894c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 16904c7a3774SStefano Zampini 16919566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 16929566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 16933c896bc6SHong Zhang } 16949566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 16953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16963c896bc6SHong Zhang } 16973c896bc6SHong Zhang 169866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1699d71ae5a4SJacob Faibussowitsch { 17004fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data; 17014fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 17024fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya; 17034fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb; 17044fe895cdSHong Zhang 17054fe895cdSHong Zhang PetscFunctionBegin; 17064fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17074fe895cdSHong Zhang PetscScalar alpha = a; 17084fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data; 17094fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data; 17109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz)); 1711792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one)); 17124fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data; 17134fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data; 17149566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz)); 1715792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one)); 17169566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1717ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 17189566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 17199566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 17209566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 17214fe895cdSHong Zhang } else { 17224de5dceeSHong Zhang Mat B; 17234de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 17245f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size"); 17259566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 17269566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 17279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 17289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 17299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 17309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 17319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 17329566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 17339566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ)); 17349566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d)); 17359566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 17369566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 17379566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 17389566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 17399566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 17409566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 17419566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 17429566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 17434fe895cdSHong Zhang } 17443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17454fe895cdSHong Zhang } 17464fe895cdSHong Zhang 174766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[]) 1748d71ae5a4SJacob Faibussowitsch { 17491302d50aSBarry Smith PetscInt i; 1750afebec48SHong Zhang PetscBool flg; 1751a5e6ed63SBarry Smith 17526849ba73SBarry Smith PetscFunctionBegin; 17539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */ 1754a5e6ed63SBarry Smith for (i = 0; i < n; i++) { 17559566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg)); 175648a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i])); 17574dcd73b1SHong Zhang } 17583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1759a5e6ed63SBarry Smith } 1760a5e6ed63SBarry Smith 176166976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a) 1762d71ae5a4SJacob Faibussowitsch { 17637d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data; 17646f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data; 17657d68702bSBarry Smith 17667d68702bSBarry Smith PetscFunctionBegin; 17676f33a894SBarry Smith if (!Y->preallocated) { 17689566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 17696f33a894SBarry Smith } else if (!aij->nz) { 1770b83222d8SBarry Smith PetscInt nonew = aij->nonew; 17719566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 1772b83222d8SBarry Smith aij->nonew = nonew; 17737d68702bSBarry Smith } 17749566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 17753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17767d68702bSBarry Smith } 17777d68702bSBarry Smith 177866976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d) 1779d71ae5a4SJacob Faibussowitsch { 17803b49f96aSBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 17813b49f96aSBarry Smith 17823b49f96aSBarry Smith PetscFunctionBegin; 17835f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 17849566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 17853b49f96aSBarry Smith if (d) { 17863b49f96aSBarry Smith PetscInt rstart; 17879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 17883b49f96aSBarry Smith *d += rstart / A->rmap->bs; 17893b49f96aSBarry Smith } 17903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17913b49f96aSBarry Smith } 17923b49f96aSBarry Smith 179366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a) 1794d71ae5a4SJacob Faibussowitsch { 1795a5b7ff6bSBarry Smith PetscFunctionBegin; 1796a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A; 17973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1798a5b7ff6bSBarry Smith } 17993b49f96aSBarry Smith 180017ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep) 180117ea310bSPierre Jolivet { 180217ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 180317ea310bSPierre Jolivet 180417ea310bSPierre Jolivet PetscFunctionBegin; 180517ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 180617ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 180717ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 180817ea310bSPierre Jolivet } 180917ea310bSPierre Jolivet 18103964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ, 1811a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1812a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1813a9d4b620SHong Zhang MatMult_MPISBAIJ, 181497304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ, 1815431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */ 1816431c96f7SBarry Smith MatMultAdd_MPISBAIJ, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin /* 10*/ NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 182341f059aeSBarry Smith MatSOR_MPISBAIJ, 1824a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 182597304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ, 1826a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1827a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1828a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1829a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 183097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ, 1831a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1832a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1833a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1834f4259b30SLisandro Dalcin /* 24*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 183926cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ, 1843f4259b30SLisandro Dalcin NULL, 1844d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ, 18507dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ, 1851d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ, 1852a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 18533c896bc6SHong Zhang MatCopy_MPISBAIJ, 1854f4259b30SLisandro Dalcin /* 44*/ NULL, 1855a30f8f8cSSatish Balay MatScale_MPISBAIJ, 18567d68702bSBarry Smith MatShift_MPISBAIJ, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin /* 49*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin /* 54*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1867f4259b30SLisandro Dalcin NULL, 1868a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 18697dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin /* 64*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_MPISBAIJ, 1880f4259b30SLisandro Dalcin NULL, 188128d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin /* 74*/ NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin /* 79*/ NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 18935bba2384SShri Abhyankar MatLoad_MPISBAIJ, 1894f4259b30SLisandro Dalcin /* 84*/ NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin /* 89*/ NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 1904f4259b30SLisandro Dalcin /* 94*/ NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin NULL, 1909f4259b30SLisandro Dalcin /* 99*/ NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 19122726fb6dSPierre Jolivet MatConjugate_MPISBAIJ, 1913f4259b30SLisandro Dalcin NULL, 1914f4259b30SLisandro Dalcin /*104*/ NULL, 191599cafbc1SBarry Smith MatRealPart_MPISBAIJ, 1916d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ, 1917d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ, 191895936485SShri Abhyankar MatRestoreRowUpperTriangular_MPISBAIJ, 1919f4259b30SLisandro Dalcin /*109*/ NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 19233b49f96aSBarry Smith MatMissingDiagonal_MPISBAIJ, 1924f4259b30SLisandro Dalcin /*114*/ NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin NULL, 1929f4259b30SLisandro Dalcin /*119*/ NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin NULL, 1934f4259b30SLisandro Dalcin /*124*/ NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937f4259b30SLisandro Dalcin NULL, 1938f4259b30SLisandro Dalcin NULL, 1939f4259b30SLisandro Dalcin /*129*/ NULL, 1940f4259b30SLisandro Dalcin NULL, 1941f4259b30SLisandro Dalcin NULL, 1942f4259b30SLisandro Dalcin NULL, 1943f4259b30SLisandro Dalcin NULL, 1944f4259b30SLisandro Dalcin /*134*/ NULL, 1945f4259b30SLisandro Dalcin NULL, 1946f4259b30SLisandro Dalcin NULL, 1947f4259b30SLisandro Dalcin NULL, 1948f4259b30SLisandro Dalcin NULL, 194946533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1950f4259b30SLisandro Dalcin NULL, 1951f4259b30SLisandro Dalcin NULL, 1952f4259b30SLisandro Dalcin NULL, 1953f4259b30SLisandro Dalcin NULL, 1954d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ, 1955d70f29a3SPierre Jolivet NULL, 1956d70f29a3SPierre Jolivet NULL, 195799a7f59eSMark Adams NULL, 195899a7f59eSMark Adams NULL, 19597fb60732SBarry Smith NULL, 1960dec0b466SHong Zhang /*150*/ NULL, 196117ea310bSPierre Jolivet MatEliminateZeros_MPISBAIJ}; 1962a30f8f8cSSatish Balay 196366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 1964d71ae5a4SJacob Faibussowitsch { 1965476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data; 1966535b19f3SBarry Smith PetscInt i, mbs, Mbs; 19675d2a9ed1SStefano Zampini PetscMPIInt size; 1968a23d5eceSKris Buschelman 1969a23d5eceSKris Buschelman PetscFunctionBegin; 1970ad79cf63SBarry Smith if (B->hash_active) { 1971aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 1972ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 1973ad79cf63SBarry Smith } 1974ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 19759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 19769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 19779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 19789566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 19795f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N); 19805f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n); 1981899cda47SBarry Smith 1982d0f46423SBarry Smith mbs = B->rmap->n / bs; 1983d0f46423SBarry Smith Mbs = B->rmap->N / bs; 19845f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs); 1985a23d5eceSKris Buschelman 1986d0f46423SBarry Smith B->rmap->bs = bs; 1987a23d5eceSKris Buschelman b->bs2 = bs * bs; 1988a23d5eceSKris Buschelman b->mbs = mbs; 1989a23d5eceSKris Buschelman b->Mbs = Mbs; 1990de64b629SHong Zhang b->nbs = B->cmap->n / bs; 1991de64b629SHong Zhang b->Nbs = B->cmap->N / bs; 1992a23d5eceSKris Buschelman 1993ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 1994d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 1995d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 1996a23d5eceSKris Buschelman 1997d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 1998d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 1999a23d5eceSKris Buschelman 2000cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2001eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2002cb7b82ddSBarry Smith #else 20039566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2004cb7b82ddSBarry Smith #endif 20059566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 20069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 20079566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 20089566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0)); 20099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b)); 20109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1)); 20119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a)); 20129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b)); 20139566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx)); 2014cb7b82ddSBarry Smith 20159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 20169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 20179566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 20189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 20199566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2020cb7b82ddSBarry Smith 2021ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 20229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 20239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 20249566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ)); 2025a23d5eceSKris Buschelman 20269566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 20279566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 202826fbe8dcSKarl Rupp 2029526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2030cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2031cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 20323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2033a23d5eceSKris Buschelman } 2034a23d5eceSKris Buschelman 203566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2036d71ae5a4SJacob Faibussowitsch { 203702106b30SBarry Smith PetscInt m, rstart, cend; 2038f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2039f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2040f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2041bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented; 20423bd0feecSPierre Jolivet PetscBool nooffprocentries; 2043dfb205c3SBarry Smith 2044dfb205c3SBarry Smith PetscFunctionBegin; 20455f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs); 20469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 20479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 20489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 20499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 20509566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2051dfb205c3SBarry Smith m = B->rmap->n / bs; 2052dfb205c3SBarry Smith rstart = B->rmap->rstart / bs; 2053dfb205c3SBarry Smith cend = B->cmap->rend / bs; 2054dfb205c3SBarry Smith 20555f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 20569566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2057dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2058dfb205c3SBarry Smith nz = ii[i + 1] - ii[i]; 20595f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 20600cd7f59aSBarry Smith /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */ 2061dfb205c3SBarry Smith JJ = jj + ii[i]; 20620cd7f59aSBarry Smith bd = 0; 2063dfb205c3SBarry Smith for (j = 0; j < nz; j++) { 20640cd7f59aSBarry Smith if (*JJ >= i + rstart) break; 2065dfb205c3SBarry Smith JJ++; 20660cd7f59aSBarry Smith bd++; 2067dfb205c3SBarry Smith } 2068dfb205c3SBarry Smith d = 0; 2069dfb205c3SBarry Smith for (; j < nz; j++) { 2070dfb205c3SBarry Smith if (*JJ++ >= cend) break; 2071dfb205c3SBarry Smith d++; 2072dfb205c3SBarry Smith } 2073dfb205c3SBarry Smith d_nnz[i] = d; 20740cd7f59aSBarry Smith o_nnz[i] = nz - d - bd; 20750cd7f59aSBarry Smith nz = nz - bd; 20760cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz); 2077dfb205c3SBarry Smith } 20789566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 20799566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE)); 20809566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2081dfb205c3SBarry Smith 2082dfb205c3SBarry Smith values = (PetscScalar *)V; 208348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2084dfb205c3SBarry Smith for (i = 0; i < m; i++) { 2085dfb205c3SBarry Smith PetscInt row = i + rstart; 2086dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2087dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i]; 2088bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2089dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 20909566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 2091bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */ 2092bb80cfbbSStefano Zampini PetscInt j; 20930cd7f59aSBarry Smith for (j = 0; j < ncols; j++) { 20940cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 20959566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 20960cd7f59aSBarry Smith } 20970cd7f59aSBarry Smith } 2098dfb205c3SBarry Smith } 2099dfb205c3SBarry Smith 21009566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 21013bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 21023bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 21039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21053bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 21063bd0feecSPierre Jolivet 21079566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 21083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2109dfb205c3SBarry Smith } 2110dfb205c3SBarry Smith 21110bad9183SKris Buschelman /*MC 2112fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices, 2113828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of 2114828413b8SBarry Smith the matrix is stored. 2115828413b8SBarry Smith 2116828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 211711a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`); 21180bad9183SKris Buschelman 21192ef1f0ffSBarry Smith Options Database Key: 212011a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()` 21210bad9183SKris Buschelman 21222ef1f0ffSBarry Smith Level: beginner 21232ef1f0ffSBarry Smith 212411a5261eSBarry Smith Note: 2125476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the 2126476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns. 2127476417e5SBarry Smith 21281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType` 21290bad9183SKris Buschelman M*/ 21300bad9183SKris Buschelman 2131d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B) 2132d71ae5a4SJacob Faibussowitsch { 2133b5df2d14SHong Zhang Mat_MPISBAIJ *b; 213494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2135b5df2d14SHong Zhang 2136b5df2d14SHong Zhang PetscFunctionBegin; 21374dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2138b0a32e0cSBarry Smith B->data = (void *)b; 2139aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2140b5df2d14SHong Zhang 2141b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ; 2142b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ; 2143b5df2d14SHong Zhang B->assembled = PETSC_FALSE; 2144b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES; 214526fbe8dcSKarl Rupp 21469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 21479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2148b5df2d14SHong Zhang 2149b5df2d14SHong Zhang /* build local table of row and column ownerships */ 21509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs)); 2151b5df2d14SHong Zhang 2152b5df2d14SHong Zhang /* build cache for off array entries formed */ 21539566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 215426fbe8dcSKarl Rupp 2155b5df2d14SHong Zhang b->donotstash = PETSC_FALSE; 21560298fd71SBarry Smith b->colmap = NULL; 21570298fd71SBarry Smith b->garray = NULL; 2158b5df2d14SHong Zhang b->roworiented = PETSC_TRUE; 2159b5df2d14SHong Zhang 2160b5df2d14SHong Zhang /* stuff used in block assembly */ 2161f4259b30SLisandro Dalcin b->barray = NULL; 2162b5df2d14SHong Zhang 2163b5df2d14SHong Zhang /* stuff used for matrix vector multiply */ 2164f4259b30SLisandro Dalcin b->lvec = NULL; 2165f4259b30SLisandro Dalcin b->Mvctx = NULL; 2166f4259b30SLisandro Dalcin b->slvec0 = NULL; 2167f4259b30SLisandro Dalcin b->slvec0b = NULL; 2168f4259b30SLisandro Dalcin b->slvec1 = NULL; 2169f4259b30SLisandro Dalcin b->slvec1a = NULL; 2170f4259b30SLisandro Dalcin b->slvec1b = NULL; 2171f4259b30SLisandro Dalcin b->sMvctx = NULL; 2172b5df2d14SHong Zhang 2173b5df2d14SHong Zhang /* stuff for MatGetRow() */ 2174f4259b30SLisandro Dalcin b->rowindices = NULL; 2175f4259b30SLisandro Dalcin b->rowvalues = NULL; 2176b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE; 2177b5df2d14SHong Zhang 2178b5df2d14SHong Zhang /* hash table stuff */ 2179f4259b30SLisandro Dalcin b->ht = NULL; 2180f4259b30SLisandro Dalcin b->hd = NULL; 2181b5df2d14SHong Zhang b->ht_size = 0; 2182b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE; 2183b5df2d14SHong Zhang b->ht_fact = 0; 2184b5df2d14SHong Zhang b->ht_total_ct = 0; 2185b5df2d14SHong Zhang b->ht_insert_ct = 0; 2186b5df2d14SHong Zhang 21877dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 21887a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 21897a868f3eSHong Zhang 2190f4259b30SLisandro Dalcin b->in_loc = NULL; 2191f4259b30SLisandro Dalcin b->v_loc = NULL; 219259ffdab8SBarry Smith b->n_loc = 0; 219394ae4db5SBarry Smith 21949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ)); 21959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ)); 21969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ)); 21979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ)); 21986214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 21999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental)); 22006214f412SHong Zhang #endif 2201d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 22029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK)); 2203d24d4204SJose E. Roman #endif 22049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic)); 22059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic)); 2206aa5a9175SDahai Guo 2207b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE; 2208b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE; 2209b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE; 2210b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE; 2211eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2212b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_FALSE; 2213eb1ec7c1SStefano Zampini #else 2214b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE; 2215eb1ec7c1SStefano Zampini #endif 221613647f61SHong Zhang 22179566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ)); 2218d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat"); 22199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL)); 222094ae4db5SBarry Smith if (flg) { 222194ae4db5SBarry Smith PetscReal fact = 1.39; 22229566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 22239566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 222494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 22259566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 22269566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 222794ae4db5SBarry Smith } 2228d0609cedSBarry Smith PetscOptionsEnd(); 22293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2230b5df2d14SHong Zhang } 2231b5df2d14SHong Zhang 22322920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2233209238afSKris Buschelman /*MC 2234002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices. 2235209238afSKris Buschelman 223611a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator, 223711a5261eSBarry Smith and `MATMPISBAIJ` otherwise. 2238209238afSKris Buschelman 223911a5261eSBarry Smith Options Database Key: 2240c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()` 2241209238afSKris Buschelman 2242209238afSKris Buschelman Level: beginner 2243209238afSKris Buschelman 22441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ` 2245209238afSKris Buschelman M*/ 2246209238afSKris Buschelman 2247b5df2d14SHong Zhang /*@C 2248b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance 2249b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters 2250b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2251b5df2d14SHong Zhang performance can be increased by more than a factor of 50. 2252b5df2d14SHong Zhang 2253c3339decSBarry Smith Collective 2254b5df2d14SHong Zhang 2255b5df2d14SHong Zhang Input Parameters: 22561c4f3114SJed Brown + B - the matrix 2257bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2258bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2259b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local 2260b5df2d14SHong Zhang submatrix (same for all local rows) 2261b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows 22626d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local 22632ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room 226495742e49SBarry Smith for the diagonal entry and set a value even if it is zero. 2265b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2266b5df2d14SHong Zhang submatrix (same for all local rows). 2267b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the 2268c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal 22692ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. 2270b5df2d14SHong Zhang 2271b5df2d14SHong Zhang Options Database Keys: 2272a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2273b5df2d14SHong Zhang block calculations (much slower) 2274a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2275b5df2d14SHong Zhang 22762ef1f0ffSBarry Smith Level: intermediate 22772ef1f0ffSBarry Smith 2278b5df2d14SHong Zhang Notes: 2279b5df2d14SHong Zhang 228011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2281b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument. 2282b5df2d14SHong Zhang 228349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 228449a6f317SBarry Smith 2285b5df2d14SHong Zhang Storage Information: 2286b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion 2287b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 2288b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 2289b5df2d14SHong Zhang local matrix (a rectangular submatrix). 2290b5df2d14SHong Zhang 2291b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of 22922ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 22932ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2294b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the 22952ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2296b5df2d14SHong Zhang 229711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 2298aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 22992ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string 2300aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2301aa95bbe8SBarry Smith 2302b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2303b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11). 2304b5df2d14SHong Zhang 2305b5df2d14SHong Zhang .vb 2306b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11 2307a4b1a0f6SJed Brown -------------------------- 2308c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2309c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2310c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2311a4b1a0f6SJed Brown -------------------------- 2312b5df2d14SHong Zhang .ve 2313b5df2d14SHong Zhang 2314b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal) 2315b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the 23166d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 231711a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2318b5df2d14SHong Zhang 23192ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 23206d10fdaeSSatish Balay plus the diagonal part of the d matrix, 23212ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix 2322c2fc9fa9SBarry Smith 2323b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal, 23242ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2325b5df2d14SHong Zhang 23261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()` 2327b5df2d14SHong Zhang @*/ 2328d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2329d71ae5a4SJacob Faibussowitsch { 2330b5df2d14SHong Zhang PetscFunctionBegin; 23316ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 23326ba663aaSJed Brown PetscValidType(B, 1); 23336ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2334cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 23353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2336b5df2d14SHong Zhang } 2337b5df2d14SHong Zhang 23382920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2339a30f8f8cSSatish Balay /*@C 234011a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`, 2341a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 2342a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 234320f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 2344a30f8f8cSSatish Balay 2345d083f849SBarry Smith Collective 2346a30f8f8cSSatish Balay 2347a30f8f8cSSatish Balay Input Parameters: 2348a30f8f8cSSatish Balay + comm - MPI communicator 234911a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 235020f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 235120f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 2352a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2353a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 235420f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 2355a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 2356a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 235720f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 235820f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2359a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 2360a30f8f8cSSatish Balay submatrix (same for all local rows) 2361a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 23626d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local 23632ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`. 236495742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and 236595742e49SBarry Smith set its value even if it is zero. 2366a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2367a30f8f8cSSatish Balay submatrix (same for all local rows). 2368a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 2369a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 23702ef1f0ffSBarry Smith each block row) or `NULL`. 2371a30f8f8cSSatish Balay 2372a30f8f8cSSatish Balay Output Parameter: 2373a30f8f8cSSatish Balay . A - the matrix 2374a30f8f8cSSatish Balay 2375a30f8f8cSSatish Balay Options Database Keys: 2376a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2377a30f8f8cSSatish Balay block calculations (much slower) 2378a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 2379a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor 2380a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 2381a30f8f8cSSatish Balay 23822ef1f0ffSBarry Smith Level: intermediate 23832ef1f0ffSBarry Smith 23842ef1f0ffSBarry Smith Notes: 238577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2386f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 238711a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 2388175b88e8SBarry Smith 2389d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 23906d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2391d1be2dadSMatthew Knepley 2392a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 2393a30f8f8cSSatish Balay (possibly both). 2394a30f8f8cSSatish Balay 239511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2396a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 2397a30f8f8cSSatish Balay 239849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 239949a6f317SBarry Smith 2400a30f8f8cSSatish Balay Storage Information: 2401a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 2402a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 2403a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 2404a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 2405a30f8f8cSSatish Balay 2406a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 24072ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 24082ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2409a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 24102ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2411a30f8f8cSSatish Balay 2412a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2413a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 2414a30f8f8cSSatish Balay 2415a30f8f8cSSatish Balay .vb 2416a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 2417a4b1a0f6SJed Brown -------------------------- 2418c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o 2419c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o 2420c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o 2421a4b1a0f6SJed Brown -------------------------- 2422a30f8f8cSSatish Balay .ve 2423a30f8f8cSSatish Balay 2424a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 2425a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 24266d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in 24272ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format. 2428a30f8f8cSSatish Balay 24292ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular 24306d10fdaeSSatish Balay plus the diagonal part of the d matrix, 24312ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 2432a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 24332ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`. 2434a30f8f8cSSatish Balay 24351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()` 2436a30f8f8cSSatish Balay @*/ 2437d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 2438d71ae5a4SJacob Faibussowitsch { 24391302d50aSBarry Smith PetscMPIInt size; 2440a30f8f8cSSatish Balay 2441a30f8f8cSSatish Balay PetscFunctionBegin; 24429566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 24449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2445273d9f13SBarry Smith if (size > 1) { 24469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ)); 24479566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 2448273d9f13SBarry Smith } else { 24499566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ)); 24509566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 2451273d9f13SBarry Smith } 24523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2453a30f8f8cSSatish Balay } 2454a30f8f8cSSatish Balay 2455d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2456d71ae5a4SJacob Faibussowitsch { 2457a30f8f8cSSatish Balay Mat mat; 2458a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data; 2459d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs; 2460387bc808SHong Zhang PetscScalar *array; 2461a30f8f8cSSatish Balay 2462a30f8f8cSSatish Balay PetscFunctionBegin; 2463f4259b30SLisandro Dalcin *newmat = NULL; 246426fbe8dcSKarl Rupp 24659566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 24669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 24679566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 24689566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 24699566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2470e1b6402fSHong Zhang 2471d5f3da31SBarry Smith mat->factortype = matin->factortype; 2472273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 247382327fa8SHong Zhang mat->assembled = PETSC_TRUE; 24747fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24757fff6886SHong Zhang 2476b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data; 2477a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 2478a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 2479a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 2480a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 2481a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 2482a30f8f8cSSatish Balay 2483a30f8f8cSSatish Balay a->size = oldmat->size; 2484a30f8f8cSSatish Balay a->rank = oldmat->rank; 2485a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 2486a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 2487f4259b30SLisandro Dalcin a->rowindices = NULL; 2488f4259b30SLisandro Dalcin a->rowvalues = NULL; 2489a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 2490f4259b30SLisandro Dalcin a->barray = NULL; 2491899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2492899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2493899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2494899cda47SBarry Smith a->cendbs = oldmat->cendbs; 2495a30f8f8cSSatish Balay 2496a30f8f8cSSatish Balay /* hash table stuff */ 2497f4259b30SLisandro Dalcin a->ht = NULL; 2498f4259b30SLisandro Dalcin a->hd = NULL; 2499a30f8f8cSSatish Balay a->ht_size = 0; 2500a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 2501a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 2502a30f8f8cSSatish Balay a->ht_total_ct = 0; 2503a30f8f8cSSatish Balay a->ht_insert_ct = 0; 2504a30f8f8cSSatish Balay 25059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2)); 2506a30f8f8cSSatish Balay if (oldmat->colmap) { 2507a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE) 2508eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2509a30f8f8cSSatish Balay #else 25109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 25119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 2512a30f8f8cSSatish Balay #endif 2513f4259b30SLisandro Dalcin } else a->colmap = NULL; 2514387bc808SHong Zhang 2515a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 25169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 25179566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2518f4259b30SLisandro Dalcin } else a->garray = NULL; 2519a30f8f8cSSatish Balay 25209566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 25219566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 25229566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 252382327fa8SHong Zhang 25249566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0)); 25259566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1)); 2526387bc808SHong Zhang 25279566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt)); 25289566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array)); 25299566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a)); 25309566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b)); 25319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array)); 25329566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array)); 25339566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b)); 25349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array)); 2535387bc808SHong Zhang 2536387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */ 25379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx)); 2538387bc808SHong Zhang a->sMvctx = oldmat->sMvctx; 253982327fa8SHong Zhang 25409566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 25419566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 25429566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 2543a30f8f8cSSatish Balay *newmat = mat; 25443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2545a30f8f8cSSatish Balay } 2546a30f8f8cSSatish Balay 2547618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 2548618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary 2549618cc2edSLisandro Dalcin 2550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer) 2551d71ae5a4SJacob Faibussowitsch { 25527f489da9SVaclav Hapla PetscBool isbinary; 255395936485SShri Abhyankar 255495936485SShri Abhyankar PetscFunctionBegin; 25559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 25565f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 25579566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer)); 25583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 255995936485SShri Abhyankar } 256095936485SShri Abhyankar 2561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[]) 2562d71ae5a4SJacob Faibussowitsch { 256324d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data; 2564f4c0e9e4SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(a->B)->data; 2565ca54ac64SHong Zhang PetscReal atmp; 256687828ca2SBarry Smith PetscReal *work, *svalues, *rvalues; 25671302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol; 25681302d50aSBarry Smith PetscMPIInt rank, size; 25691302d50aSBarry Smith PetscInt *rowners_bs, dest, count, source; 257087828ca2SBarry Smith PetscScalar *va; 25718a1c53f2SBarry Smith MatScalar *ba; 2572f4c0e9e4SHong Zhang MPI_Status stat; 257324d5174aSHong Zhang 257424d5174aSHong Zhang PetscFunctionBegin; 25755f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov"); 25769566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL)); 25779566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va)); 2578f4c0e9e4SHong Zhang 25799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 25809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2581f4c0e9e4SHong Zhang 2582d0f46423SBarry Smith bs = A->rmap->bs; 2583f4c0e9e4SHong Zhang mbs = a->mbs; 2584f4c0e9e4SHong Zhang Mbs = a->Mbs; 2585f4c0e9e4SHong Zhang ba = b->a; 2586f4c0e9e4SHong Zhang bi = b->i; 2587f4c0e9e4SHong Zhang bj = b->j; 2588f4c0e9e4SHong Zhang 2589f4c0e9e4SHong Zhang /* find ownerships */ 2590d0f46423SBarry Smith rowners_bs = A->rmap->range; 2591f4c0e9e4SHong Zhang 2592f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */ 25939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work)); 2594f4c0e9e4SHong Zhang 2595f4c0e9e4SHong Zhang /* row_max for B */ 2596b8475685SHong Zhang if (rank != size - 1) { 2597f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) { 25989371c9d4SSatish Balay ncols = bi[1] - bi[0]; 25999371c9d4SSatish Balay bi++; 2600f4c0e9e4SHong Zhang brow = bs * i; 2601f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) { 2602f4c0e9e4SHong Zhang bcol = bs * (*bj); 2603f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) { 2604ca54ac64SHong Zhang col = bcol + kcol; /* local col index */ 260504d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */ 2606f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) { 26079371c9d4SSatish Balay atmp = PetscAbsScalar(*ba); 26089371c9d4SSatish Balay ba++; 2609ca54ac64SHong Zhang row = brow + krow; /* local row index */ 2610ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp; 2611f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp; 2612f4c0e9e4SHong Zhang } 2613f4c0e9e4SHong Zhang } 2614f4c0e9e4SHong Zhang bj++; 2615f4c0e9e4SHong Zhang } 2616f4c0e9e4SHong Zhang } 2617f4c0e9e4SHong Zhang 2618f4c0e9e4SHong Zhang /* send values to its owners */ 2619f4c0e9e4SHong Zhang for (dest = rank + 1; dest < size; dest++) { 2620f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest]; 2621ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest]; 26229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A))); 2623ca54ac64SHong Zhang } 2624f4c0e9e4SHong Zhang } 2625f4c0e9e4SHong Zhang 2626f4c0e9e4SHong Zhang /* receive values */ 2627ca54ac64SHong Zhang if (rank) { 2628f4c0e9e4SHong Zhang rvalues = work; 2629ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank]; 2630f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) { 26319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat)); 2632f4c0e9e4SHong Zhang /* process values */ 2633f4c0e9e4SHong Zhang for (i = 0; i < count; i++) { 2634ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i]; 2635f4c0e9e4SHong Zhang } 2636f4c0e9e4SHong Zhang } 2637ca54ac64SHong Zhang } 2638f4c0e9e4SHong Zhang 26399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va)); 26409566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 26413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 264224d5174aSHong Zhang } 26432798e883SHong Zhang 2644d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2645d71ae5a4SJacob Faibussowitsch { 26462798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data; 2647d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs; 26483649974fSBarry Smith PetscScalar *x, *ptr, *from; 2649ffe4fb16SHong Zhang Vec bb1; 26503649974fSBarry Smith const PetscScalar *b; 2651ffe4fb16SHong Zhang 2652ffe4fb16SHong Zhang PetscFunctionBegin; 26535f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits); 26545f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented"); 2655ffe4fb16SHong Zhang 2656a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 26579566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 26583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2659a2b30743SBarry Smith } 2660a2b30743SBarry Smith 2661ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2662ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 26639566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx)); 2664ffe4fb16SHong Zhang its--; 2665ffe4fb16SHong Zhang } 2666ffe4fb16SHong Zhang 26679566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1)); 2668ffe4fb16SHong Zhang while (its--) { 2669ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */ 26709566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 2671ffe4fb16SHong Zhang 2672ffe4fb16SHong Zhang /* copy xx into slvec0a */ 26739566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr)); 26749566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 26759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs)); 26769566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr)); 2677ffe4fb16SHong Zhang 26789566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0)); 2679ffe4fb16SHong Zhang 2680ffe4fb16SHong Zhang /* copy bb into slvec1a */ 26819566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr)); 26829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 26839566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs)); 26849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr)); 2685ffe4fb16SHong Zhang 2686ffe4fb16SHong Zhang /* set slvec1b = 0 */ 2687629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2688629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 2689ffe4fb16SHong Zhang 26909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 26919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 26929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 26939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 2694ffe4fb16SHong Zhang 2695ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */ 26969566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1)); 2697ffe4fb16SHong Zhang 2698ffe4fb16SHong Zhang /* local diagonal sweep */ 26999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx)); 2700ffe4fb16SHong Zhang } 27019566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2702fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27039566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2704fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) { 27059566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2706fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) { 2707fa22f6d0SBarry Smith Vec xx1; 2708ace3abfcSBarry Smith PetscBool hasop; 270920f1ed55SBarry Smith const PetscScalar *diag; 2710887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega; 271120f1ed55SBarry Smith PetscInt i, n; 2712fa22f6d0SBarry Smith 2713fa22f6d0SBarry Smith if (!mat->xx1) { 27149566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1)); 27159566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1)); 2716fa22f6d0SBarry Smith } 2717fa22f6d0SBarry Smith xx1 = mat->xx1; 2718fa22f6d0SBarry Smith bb1 = mat->bb1; 2719fa22f6d0SBarry Smith 27209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 2721fa22f6d0SBarry Smith 2722fa22f6d0SBarry Smith if (!mat->diag) { 2723effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */ 27249566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 27259566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 2726fa22f6d0SBarry Smith } 27279566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 2728fa22f6d0SBarry Smith 2729fa22f6d0SBarry Smith if (hasop) { 27309566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 27319566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb)); 273220f1ed55SBarry Smith } else { 273320f1ed55SBarry Smith /* 273420f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler 27359566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx)); 27369566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb)); 273720f1ed55SBarry Smith */ 27389566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl)); 27399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag)); 27409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 27419566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27429566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n)); 2743887ee2caSBarry Smith if (omega == 1.0) { 274426fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i]; 27459566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n)); 2746887ee2caSBarry Smith } else { 274726fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i]; 27489566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n)); 2749887ee2caSBarry Smith } 27509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl)); 27519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag)); 27529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 27539566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 275420f1ed55SBarry Smith } 2755fa22f6d0SBarry Smith 2756fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */ 2757629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b)); 2758629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b)); 27599566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b)); 27609566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from)); 27619566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 27629566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs)); 27639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from)); 27649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 27659566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27669566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD)); 27679566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a)); 2768fa22f6d0SBarry Smith 2769fa22f6d0SBarry Smith /* local sweep */ 27709566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 27719566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 2772f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format"); 27733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2774ffe4fb16SHong Zhang } 2775ffe4fb16SHong Zhang 2776dfb205c3SBarry Smith /*@ 277711a5261eSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard 2778dfb205c3SBarry Smith CSR format the local rows. 2779dfb205c3SBarry Smith 2780d083f849SBarry Smith Collective 2781dfb205c3SBarry Smith 2782dfb205c3SBarry Smith Input Parameters: 2783dfb205c3SBarry Smith + comm - MPI communicator 2784dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 278511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 2786dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 278711a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 27882ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 27892ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 27902ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 2791483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2792dfb205c3SBarry Smith . j - column indices 2793dfb205c3SBarry Smith - a - matrix values 2794dfb205c3SBarry Smith 2795dfb205c3SBarry Smith Output Parameter: 2796dfb205c3SBarry Smith . mat - the matrix 2797dfb205c3SBarry Smith 2798dfb205c3SBarry Smith Level: intermediate 2799dfb205c3SBarry Smith 2800dfb205c3SBarry Smith Notes: 28012ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 28022ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have 28032ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 2804dfb205c3SBarry Smith 28052ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 2806dfb205c3SBarry Smith 28071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 28087d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 2809dfb205c3SBarry Smith @*/ 2810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 2811d71ae5a4SJacob Faibussowitsch { 2812dfb205c3SBarry Smith PetscFunctionBegin; 28135f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 28145f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 28159566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 28169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 28179566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ)); 28189566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 28193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2820dfb205c3SBarry Smith } 2821dfb205c3SBarry Smith 2822dfb205c3SBarry Smith /*@C 282311a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values 2824dfb205c3SBarry Smith 2825d083f849SBarry Smith Collective 2826dfb205c3SBarry Smith 2827dfb205c3SBarry Smith Input Parameters: 28281c4f3114SJed Brown + B - the matrix 2829dfb205c3SBarry Smith . bs - the block size 28302ef1f0ffSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2831dfb205c3SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2832dfb205c3SBarry Smith - v - optional values in the matrix 2833dfb205c3SBarry Smith 2834664954b6SBarry Smith Level: advanced 2835664954b6SBarry Smith 2836664954b6SBarry Smith Notes: 28370cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 28380cd7f59aSBarry Smith and usually the numerical values as well 28390cd7f59aSBarry Smith 284050c5228eSBarry Smith Any entries below the diagonal are ignored 2841dfb205c3SBarry Smith 28427d2c085eSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ` 2843dfb205c3SBarry Smith @*/ 2844d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2845d71ae5a4SJacob Faibussowitsch { 2846dfb205c3SBarry Smith PetscFunctionBegin; 2847cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 28483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2849dfb205c3SBarry Smith } 2850dfb205c3SBarry Smith 2851d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 2852d71ae5a4SJacob Faibussowitsch { 285310c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 285410c56fdeSHong Zhang PetscInt *indx; 285510c56fdeSHong Zhang PetscScalar *values; 2856dfb205c3SBarry Smith 28574dcd73b1SHong Zhang PetscFunctionBegin; 28589566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 285910c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 286010c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data; 2861de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs; 286210c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j; 2863de25e9cbSPierre Jolivet PetscMPIInt rank, size; 28644dcd73b1SHong Zhang 28659566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 28669371c9d4SSatish Balay mbs = m / bs; 28679371c9d4SSatish Balay Nbs = N / cbs; 286848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 2869da91a574SPierre Jolivet nbs = n / cbs; 28704dcd73b1SHong Zhang 28719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 2872d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 2873de25e9cbSPierre Jolivet 28749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 28759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 2876de25e9cbSPierre Jolivet if (rank == size - 1) { 2877de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */ 28785f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 2879de25e9cbSPierre Jolivet } 2880de25e9cbSPierre Jolivet 2881d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 28829566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 288310c56fdeSHong Zhang for (i = 0; i < mbs; i++) { 28849566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 28854dcd73b1SHong Zhang nnz = nnz / bs; 28864dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 28879566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 28889566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 28894dcd73b1SHong Zhang } 28909566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 28919566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 28924dcd73b1SHong Zhang 28939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 28949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 28959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 28969566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ)); 28979566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz)); 28989566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 2899d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 29004dcd73b1SHong Zhang } 29014dcd73b1SHong Zhang 290210c56fdeSHong Zhang /* numeric phase */ 29039566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 29049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 29054dcd73b1SHong Zhang 29069566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE)); 29074dcd73b1SHong Zhang for (i = 0; i < m; i++) { 29089566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29094dcd73b1SHong Zhang Ii = i + rstart; 29109566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 29119566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values)); 29124dcd73b1SHong Zhang } 29139566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE)); 29149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 29159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 29163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29174dcd73b1SHong Zhang } 2918