xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision fdfbdca60871d1230bda7d5d096e2bd2d2a23f7a)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay 
666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith 
1026cec326SBarry Smith   PetscFunctionBegin;
1126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith   PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith   PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith   PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith   PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith   PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith   PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith   PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith   PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith   PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith 
4426cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
5226cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith 
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith 
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini 
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini   Mat       preallocator;
78b147fbf3SStefano Zampini   PetscInt  r, rstart, rend;
79b147fbf3SStefano Zampini   PetscInt  bs, i, m, n, M, N;
80b147fbf3SStefano Zampini   PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini 
82b147fbf3SStefano Zampini   PetscFunctionBegin;
83b147fbf3SStefano Zampini   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini   PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini   for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini     PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini   }
90b147fbf3SStefano Zampini   PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch   PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini   for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini     PetscInt           ncols;
102b147fbf3SStefano Zampini     const PetscInt    *row;
103b147fbf3SStefano Zampini     const PetscScalar *vals;
104b147fbf3SStefano Zampini 
105b147fbf3SStefano Zampini     for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch       PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch       PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet       if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini     }
111b147fbf3SStefano Zampini   }
1129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch   PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini 
119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini   Mat      B;
122b147fbf3SStefano Zampini   PetscInt r;
123b147fbf3SStefano Zampini 
124b147fbf3SStefano Zampini   PetscFunctionBegin;
125b147fbf3SStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet     PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini     PetscInt  bs;
128b147fbf3SStefano Zampini 
1299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet     if (!isdense) {
1389566063dSJacob Faibussowitsch       PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch       PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch       PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet     } else {
1429566063dSJacob Faibussowitsch       PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet     }
14428d58a37SPierre Jolivet   } else {
14528d58a37SPierre Jolivet     B = *newmat;
1469566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet   }
148b147fbf3SStefano Zampini 
1499566063dSJacob Faibussowitsch   PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini   for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini     PetscInt           ncols;
152b147fbf3SStefano Zampini     const PetscInt    *row;
153b147fbf3SStefano Zampini     const PetscScalar *vals;
154b147fbf3SStefano Zampini 
1559566063dSJacob Faibussowitsch     PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith     if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini       PetscInt i;
16048a46eb9SPierre Jolivet       for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini     } else {
1629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini     }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini   }
1699566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini 
173b147fbf3SStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini   } else {
176b147fbf3SStefano Zampini     *newmat = B;
177b147fbf3SStefano Zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini 
18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay 
185a30f8f8cSSatish Balay   PetscFunctionBegin;
1869566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay 
19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang   Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay 
195a30f8f8cSSatish Balay   PetscFunctionBegin;
1969566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay 
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet   do { \
203a30f8f8cSSatish Balay     brow = row / bs; \
2049371c9d4SSatish Balay     rp   = aj + ai[brow]; \
2059371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay     rmax = aimax[brow]; \
2079371c9d4SSatish Balay     nrow = ailen[brow]; \
208a30f8f8cSSatish Balay     bcol = col / bs; \
2099371c9d4SSatish Balay     ridx = row % bs; \
2109371c9d4SSatish Balay     cidx = col % bs; \
2119371c9d4SSatish Balay     low  = 0; \
2129371c9d4SSatish Balay     high = nrow; \
213a30f8f8cSSatish Balay     while (high - low > 3) { \
214a30f8f8cSSatish Balay       t = (low + high) / 2; \
215a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay       else low = t; \
217a30f8f8cSSatish Balay     } \
218a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay         else *bap = value; \
224a30f8f8cSSatish Balay         goto a_noinsert; \
225a30f8f8cSSatish Balay       } \
226a30f8f8cSSatish Balay     } \
227a30f8f8cSSatish Balay     if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay     N = nrow++ - 1; \
231a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
236a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
237e56f5c9eSBarry Smith     A->nonzerostate++; \
238a30f8f8cSSatish Balay   a_noinsert:; \
239a30f8f8cSSatish Balay     ailen[brow] = nrow; \
240a8f51744SPierre Jolivet   } while (0)
241e5e170daSBarry Smith 
242d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
243a8f51744SPierre Jolivet   do { \
244a30f8f8cSSatish Balay     brow = row / bs; \
2459371c9d4SSatish Balay     rp   = bj + bi[brow]; \
2469371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
2479371c9d4SSatish Balay     rmax = bimax[brow]; \
2489371c9d4SSatish Balay     nrow = bilen[brow]; \
249a30f8f8cSSatish Balay     bcol = col / bs; \
2509371c9d4SSatish Balay     ridx = row % bs; \
2519371c9d4SSatish Balay     cidx = col % bs; \
2529371c9d4SSatish Balay     low  = 0; \
2539371c9d4SSatish Balay     high = nrow; \
254a30f8f8cSSatish Balay     while (high - low > 3) { \
255a30f8f8cSSatish Balay       t = (low + high) / 2; \
256a30f8f8cSSatish Balay       if (rp[t] > bcol) high = t; \
257a30f8f8cSSatish Balay       else low = t; \
258a30f8f8cSSatish Balay     } \
259a30f8f8cSSatish Balay     for (_i = low; _i < high; _i++) { \
260a30f8f8cSSatish Balay       if (rp[_i] > bcol) break; \
261a30f8f8cSSatish Balay       if (rp[_i] == bcol) { \
262a30f8f8cSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
263a30f8f8cSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
264a30f8f8cSSatish Balay         else *bap = value; \
265a30f8f8cSSatish Balay         goto b_noinsert; \
266a30f8f8cSSatish Balay       } \
267a30f8f8cSSatish Balay     } \
268a30f8f8cSSatish Balay     if (b->nonew == 1) goto b_noinsert; \
2695f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
270fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
271a30f8f8cSSatish Balay     N = nrow++ - 1; \
272a30f8f8cSSatish Balay     /* shift up all the later entries in this row */ \
2739566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2759566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
276a30f8f8cSSatish Balay     rp[_i]                          = bcol; \
277a30f8f8cSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
278e56f5c9eSBarry Smith     B->nonzerostate++; \
279a30f8f8cSSatish Balay   b_noinsert:; \
280a30f8f8cSSatish Balay     bilen[brow] = nrow; \
281a8f51744SPierre Jolivet   } while (0)
282a30f8f8cSSatish Balay 
283a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
284da81f932SPierre Jolivet    Any a(i,j) with i>j input by user is ignored or generates an error
285a30f8f8cSSatish Balay */
28666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
287d71ae5a4SJacob Faibussowitsch {
288a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
289a30f8f8cSSatish Balay   MatScalar     value;
290ace3abfcSBarry Smith   PetscBool     roworiented = baij->roworiented;
2911302d50aSBarry Smith   PetscInt      i, j, row, col;
292d0f46423SBarry Smith   PetscInt      rstart_orig = mat->rmap->rstart;
293d0f46423SBarry Smith   PetscInt      rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
294d0f46423SBarry Smith   PetscInt      cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
295a30f8f8cSSatish Balay 
296a30f8f8cSSatish Balay   /* Some Variables required in the macro */
297a30f8f8cSSatish Balay   Mat           A     = baij->A;
298a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a     = (Mat_SeqSBAIJ *)(A)->data;
2991302d50aSBarry Smith   PetscInt     *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
300a30f8f8cSSatish Balay   MatScalar    *aa = a->a;
301a30f8f8cSSatish Balay 
302a30f8f8cSSatish Balay   Mat          B     = baij->B;
303a30f8f8cSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
3041302d50aSBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
305a30f8f8cSSatish Balay   MatScalar   *ba = b->a;
306a30f8f8cSSatish Balay 
3071302d50aSBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
3081302d50aSBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
309a30f8f8cSSatish Balay   MatScalar *ap, *bap;
310a30f8f8cSSatish Balay 
311a30f8f8cSSatish Balay   /* for stash */
3120298fd71SBarry Smith   PetscInt   n_loc, *in_loc = NULL;
3130298fd71SBarry Smith   MatScalar *v_loc = NULL;
314a30f8f8cSSatish Balay 
315a30f8f8cSSatish Balay   PetscFunctionBegin;
316a30f8f8cSSatish Balay   if (!baij->donotstash) {
31759ffdab8SBarry Smith     if (n > baij->n_loc) {
3189566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->in_loc));
3199566063dSJacob Faibussowitsch       PetscCall(PetscFree(baij->v_loc));
3209566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->in_loc));
3219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &baij->v_loc));
32226fbe8dcSKarl Rupp 
32359ffdab8SBarry Smith       baij->n_loc = n;
32459ffdab8SBarry Smith     }
32559ffdab8SBarry Smith     in_loc = baij->in_loc;
32659ffdab8SBarry Smith     v_loc  = baij->v_loc;
327a30f8f8cSSatish Balay   }
328a30f8f8cSSatish Balay 
329a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
330a30f8f8cSSatish Balay     if (im[i] < 0) continue;
3315f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
332a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
333a30f8f8cSSatish Balay       row = im[i] - rstart_orig;                     /* local row index */
334a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
33501b2bd88SHong Zhang         if (im[i] / bs > in[j] / bs) {
33601b2bd88SHong Zhang           if (a->ignore_ltriangular) {
33701b2bd88SHong Zhang             continue; /* ignore lower triangular blocks */
33826fbe8dcSKarl Rupp           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33901b2bd88SHong Zhang         }
340a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
341a30f8f8cSSatish Balay           col  = in[j] - cstart_orig;                    /* local col index */
3429371c9d4SSatish Balay           brow = row / bs;
3439371c9d4SSatish Balay           bcol = col / bs;
344a30f8f8cSSatish Balay           if (brow > bcol) continue; /* ignore lower triangular blocks of A */
345db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
346db4deed7SKarl Rupp           else value = v[i + j * m];
347d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3489566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
349f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
350f7d195e4SLawrence Mitchell           continue;
351f7d195e4SLawrence Mitchell         } else {
352f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
353f7d195e4SLawrence Mitchell           /* off-diag entry (B) */
354a30f8f8cSSatish Balay           if (mat->was_assembled) {
35548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
356a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
357eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35871730473SSatish Balay             col = col - 1;
359a30f8f8cSSatish Balay #else
36071730473SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
361a30f8f8cSSatish Balay #endif
362a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ *)(baij->A->data))->nonew) {
3639566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
364a30f8f8cSSatish Balay               col = in[j];
365a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
366a30f8f8cSSatish Balay               B     = baij->B;
367a30f8f8cSSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
3689371c9d4SSatish Balay               bimax = b->imax;
3699371c9d4SSatish Balay               bi    = b->i;
3709371c9d4SSatish Balay               bilen = b->ilen;
3719371c9d4SSatish Balay               bj    = b->j;
372a30f8f8cSSatish Balay               ba    = b->a;
37371730473SSatish Balay             } else col += in[j] % bs;
374a30f8f8cSSatish Balay           } else col = in[j];
375db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
376db4deed7SKarl Rupp           else value = v[i + j * m];
377d40312a9SBarry Smith           MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3789566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
379a30f8f8cSSatish Balay         }
380a30f8f8cSSatish Balay       }
381a30f8f8cSSatish Balay     } else { /* off processor entry */
3825f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
383a30f8f8cSSatish Balay       if (!baij->donotstash) {
3845080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
385a30f8f8cSSatish Balay         n_loc          = 0;
386a30f8f8cSSatish Balay         for (j = 0; j < n; j++) {
387f65c83cfSHong Zhang           if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
388a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
389a30f8f8cSSatish Balay           if (roworiented) {
390a30f8f8cSSatish Balay             v_loc[n_loc] = v[i * n + j];
391a30f8f8cSSatish Balay           } else {
392a30f8f8cSSatish Balay             v_loc[n_loc] = v[j * m + i];
393a30f8f8cSSatish Balay           }
394a30f8f8cSSatish Balay           n_loc++;
395a30f8f8cSSatish Balay         }
3969566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
397a30f8f8cSSatish Balay       }
398a30f8f8cSSatish Balay     }
399a30f8f8cSSatish Balay   }
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401a30f8f8cSSatish Balay }
402a30f8f8cSSatish Balay 
403d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
404d71ae5a4SJacob Faibussowitsch {
40536bd2089SBarry Smith   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
40636bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40736bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40836bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40936bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
41036bd2089SBarry Smith   const PetscScalar *value       = v;
41136bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
41236bd2089SBarry Smith 
41336bd2089SBarry Smith   PetscFunctionBegin;
41436bd2089SBarry Smith   if (col < row) {
4153ba16761SJacob Faibussowitsch     if (a->ignore_ltriangular) PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41636bd2089SBarry Smith     else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
41736bd2089SBarry Smith   }
41836bd2089SBarry Smith   rp    = aj + ai[row];
41936bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
42036bd2089SBarry Smith   rmax  = imax[row];
42136bd2089SBarry Smith   nrow  = ailen[row];
42236bd2089SBarry Smith   value = v;
42336bd2089SBarry Smith   low   = 0;
42436bd2089SBarry Smith   high  = nrow;
42536bd2089SBarry Smith 
42636bd2089SBarry Smith   while (high - low > 7) {
42736bd2089SBarry Smith     t = (low + high) / 2;
42836bd2089SBarry Smith     if (rp[t] > col) high = t;
42936bd2089SBarry Smith     else low = t;
43036bd2089SBarry Smith   }
43136bd2089SBarry Smith   for (i = low; i < high; i++) {
43236bd2089SBarry Smith     if (rp[i] > col) break;
43336bd2089SBarry Smith     if (rp[i] == col) {
43436bd2089SBarry Smith       bap = ap + bs2 * i;
43536bd2089SBarry Smith       if (roworiented) {
43636bd2089SBarry Smith         if (is == ADD_VALUES) {
43736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
438ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43936bd2089SBarry Smith           }
44036bd2089SBarry Smith         } else {
44136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
442ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44336bd2089SBarry Smith           }
44436bd2089SBarry Smith         }
44536bd2089SBarry Smith       } else {
44636bd2089SBarry Smith         if (is == ADD_VALUES) {
44736bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
448ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44936bd2089SBarry Smith           }
45036bd2089SBarry Smith         } else {
45136bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
452ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45336bd2089SBarry Smith           }
45436bd2089SBarry Smith         }
45536bd2089SBarry Smith       }
45636bd2089SBarry Smith       goto noinsert2;
45736bd2089SBarry Smith     }
45836bd2089SBarry Smith   }
45936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
4605f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
46136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4629371c9d4SSatish Balay   N = nrow++ - 1;
4639371c9d4SSatish Balay   high++;
46436bd2089SBarry Smith   /* shift up all the later entries in this row */
4659566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4669566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46736bd2089SBarry Smith   rp[i] = col;
46836bd2089SBarry Smith   bap   = ap + bs2 * i;
46936bd2089SBarry Smith   if (roworiented) {
47036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
471ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
47236bd2089SBarry Smith     }
47336bd2089SBarry Smith   } else {
47436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
475ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47636bd2089SBarry Smith     }
47736bd2089SBarry Smith   }
47836bd2089SBarry Smith noinsert2:;
47936bd2089SBarry Smith   ailen[row] = nrow;
4803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48136bd2089SBarry Smith }
48236bd2089SBarry Smith 
48336bd2089SBarry Smith /*
48436bd2089SBarry Smith    This routine is exactly duplicated in mpibaij.c
48536bd2089SBarry Smith */
486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
487d71ae5a4SJacob Faibussowitsch {
48836bd2089SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
48936bd2089SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
49036bd2089SBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
49136bd2089SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
49236bd2089SBarry Smith   PetscBool          roworiented = a->roworiented;
49336bd2089SBarry Smith   const PetscScalar *value       = v;
49436bd2089SBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
49536bd2089SBarry Smith 
49636bd2089SBarry Smith   PetscFunctionBegin;
49736bd2089SBarry Smith   rp    = aj + ai[row];
49836bd2089SBarry Smith   ap    = aa + bs2 * ai[row];
49936bd2089SBarry Smith   rmax  = imax[row];
50036bd2089SBarry Smith   nrow  = ailen[row];
50136bd2089SBarry Smith   low   = 0;
50236bd2089SBarry Smith   high  = nrow;
50336bd2089SBarry Smith   value = v;
50436bd2089SBarry Smith   while (high - low > 7) {
50536bd2089SBarry Smith     t = (low + high) / 2;
50636bd2089SBarry Smith     if (rp[t] > col) high = t;
50736bd2089SBarry Smith     else low = t;
50836bd2089SBarry Smith   }
50936bd2089SBarry Smith   for (i = low; i < high; i++) {
51036bd2089SBarry Smith     if (rp[i] > col) break;
51136bd2089SBarry Smith     if (rp[i] == col) {
51236bd2089SBarry Smith       bap = ap + bs2 * i;
51336bd2089SBarry Smith       if (roworiented) {
51436bd2089SBarry Smith         if (is == ADD_VALUES) {
51536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
516ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51736bd2089SBarry Smith           }
51836bd2089SBarry Smith         } else {
51936bd2089SBarry Smith           for (ii = 0; ii < bs; ii++) {
520ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
52136bd2089SBarry Smith           }
52236bd2089SBarry Smith         }
52336bd2089SBarry Smith       } else {
52436bd2089SBarry Smith         if (is == ADD_VALUES) {
52536bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
526ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52736bd2089SBarry Smith             bap += bs;
52836bd2089SBarry Smith           }
52936bd2089SBarry Smith         } else {
53036bd2089SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
531ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
53236bd2089SBarry Smith             bap += bs;
53336bd2089SBarry Smith           }
53436bd2089SBarry Smith         }
53536bd2089SBarry Smith       }
53636bd2089SBarry Smith       goto noinsert2;
53736bd2089SBarry Smith     }
53836bd2089SBarry Smith   }
53936bd2089SBarry Smith   if (nonew == 1) goto noinsert2;
5405f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
54136bd2089SBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5429371c9d4SSatish Balay   N = nrow++ - 1;
5439371c9d4SSatish Balay   high++;
54436bd2089SBarry Smith   /* shift up all the later entries in this row */
5459566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5469566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54736bd2089SBarry Smith   rp[i] = col;
54836bd2089SBarry Smith   bap   = ap + bs2 * i;
54936bd2089SBarry Smith   if (roworiented) {
55036bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
551ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
55236bd2089SBarry Smith     }
55336bd2089SBarry Smith   } else {
55436bd2089SBarry Smith     for (ii = 0; ii < bs; ii++) {
555ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55636bd2089SBarry Smith     }
55736bd2089SBarry Smith   }
55836bd2089SBarry Smith noinsert2:;
55936bd2089SBarry Smith   ailen[row] = nrow;
5603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56136bd2089SBarry Smith }
56236bd2089SBarry Smith 
56336bd2089SBarry Smith /*
56436bd2089SBarry Smith     This routine could be optimized by removing the need for the block copy below and passing stride information
56536bd2089SBarry Smith   to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56636bd2089SBarry Smith */
56766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
568d71ae5a4SJacob Faibussowitsch {
5690880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ *)mat->data;
570f15d580aSBarry Smith   const MatScalar *value;
571f15d580aSBarry Smith   MatScalar       *barray      = baij->barray;
572ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
573899cda47SBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
574476417e5SBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
575476417e5SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5760880e062SHong Zhang 
577a30f8f8cSSatish Balay   PetscFunctionBegin;
5780880e062SHong Zhang   if (!barray) {
5799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
5800880e062SHong Zhang     baij->barray = barray;
5810880e062SHong Zhang   }
5820880e062SHong Zhang 
5830880e062SHong Zhang   if (roworiented) {
5840880e062SHong Zhang     stepval = (n - 1) * bs;
5850880e062SHong Zhang   } else {
5860880e062SHong Zhang     stepval = (m - 1) * bs;
5870880e062SHong Zhang   }
5880880e062SHong Zhang   for (i = 0; i < m; i++) {
5890880e062SHong Zhang     if (im[i] < 0) continue;
5906bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5910880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
5920880e062SHong Zhang       row = im[i] - rstart;
5930880e062SHong Zhang       for (j = 0; j < n; j++) {
594f3f98c53SJed Brown         if (im[i] > in[j]) {
595f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
596e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
597f3f98c53SJed Brown         }
5980880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
5990880e062SHong Zhang         if ((roworiented) && (n == 1)) {
600f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
6010880e062SHong Zhang         } else if ((!roworiented) && (m == 1)) {
602f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
6030880e062SHong Zhang         } else { /* Here a copy is required */
6040880e062SHong Zhang           if (roworiented) {
6050880e062SHong Zhang             value = v + i * (stepval + bs) * bs + j * bs;
6060880e062SHong Zhang           } else {
6070880e062SHong Zhang             value = v + j * (stepval + bs) * bs + i * bs;
6080880e062SHong Zhang           }
6090880e062SHong Zhang           for (ii = 0; ii < bs; ii++, value += stepval) {
610ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6110880e062SHong Zhang           }
6120880e062SHong Zhang           barray -= bs2;
6130880e062SHong Zhang         }
6140880e062SHong Zhang 
6150880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
6160880e062SHong Zhang           col = in[j] - cstart;
6179566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
618f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
619f7d195e4SLawrence Mitchell           continue;
620f7d195e4SLawrence Mitchell         } else {
621f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6220880e062SHong Zhang           if (mat->was_assembled) {
62348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6240880e062SHong Zhang 
6252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
6260880e062SHong Zhang   #if defined(PETSC_USE_CTABLE)
6279371c9d4SSatish Balay             {
6289371c9d4SSatish Balay               PetscInt data;
629eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
63008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
6310880e062SHong Zhang             }
6320880e062SHong Zhang   #else
63308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
6340880e062SHong Zhang   #endif
6350880e062SHong Zhang #endif
6360880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
637eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
6380880e062SHong Zhang             col = (col - 1) / bs;
6390880e062SHong Zhang #else
6400880e062SHong Zhang             col = (baij->colmap[in[j]] - 1) / bs;
6410880e062SHong Zhang #endif
6420880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
6439566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISBAIJ(mat));
6440880e062SHong Zhang               col = in[j];
6450880e062SHong Zhang             }
64626fbe8dcSKarl Rupp           } else col = in[j];
6479566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6480880e062SHong Zhang         }
6490880e062SHong Zhang       }
6500880e062SHong Zhang     } else {
6515f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6520880e062SHong Zhang       if (!baij->donotstash) {
6530880e062SHong Zhang         if (roworiented) {
6549566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6550880e062SHong Zhang         } else {
6569566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6570880e062SHong Zhang         }
6580880e062SHong Zhang       }
6590880e062SHong Zhang     }
6600880e062SHong Zhang   }
6613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
662a30f8f8cSSatish Balay }
663a30f8f8cSSatish Balay 
66466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
665d71ae5a4SJacob Faibussowitsch {
666f3566a2aSHong Zhang   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
667d0f46423SBarry Smith   PetscInt      bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
668d0f46423SBarry Smith   PetscInt      bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
669a30f8f8cSSatish Balay 
670a30f8f8cSSatish Balay   PetscFunctionBegin;
671a30f8f8cSSatish Balay   for (i = 0; i < m; i++) {
67254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
67354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
674a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
675a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
676a30f8f8cSSatish Balay       for (j = 0; j < n; j++) {
67754c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
67854c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
679a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
680a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
6819566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
682a30f8f8cSSatish Balay         } else {
68348a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
684a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
685eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
686a30f8f8cSSatish Balay           data--;
687a30f8f8cSSatish Balay #else
688a30f8f8cSSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
689a30f8f8cSSatish Balay #endif
690a30f8f8cSSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
691a30f8f8cSSatish Balay           else {
692a30f8f8cSSatish Balay             col = data + idxn[j] % bs;
6939566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
694a30f8f8cSSatish Balay           }
695a30f8f8cSSatish Balay         }
696a30f8f8cSSatish Balay       }
697f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
698a30f8f8cSSatish Balay   }
6993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700a30f8f8cSSatish Balay }
701a30f8f8cSSatish Balay 
70266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
703d71ae5a4SJacob Faibussowitsch {
704a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
705a30f8f8cSSatish Balay   PetscReal     sum[2], *lnorm2;
706a30f8f8cSSatish Balay 
707a30f8f8cSSatish Balay   PetscFunctionBegin;
708a30f8f8cSSatish Balay   if (baij->size == 1) {
7099566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, norm));
710a30f8f8cSSatish Balay   } else {
711a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
7129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2, &lnorm2));
7139566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->A, type, lnorm2));
7149371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7159371c9d4SSatish Balay       lnorm2++; /* squar power of norm(A) */
7169566063dSJacob Faibussowitsch       PetscCall(MatNorm(baij->B, type, lnorm2));
7179371c9d4SSatish Balay       *lnorm2 = (*lnorm2) * (*lnorm2);
7189371c9d4SSatish Balay       lnorm2--; /* squar power of norm(B) */
7191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7208f1a2a5eSBarry Smith       *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7219566063dSJacob Faibussowitsch       PetscCall(PetscFree(lnorm2));
7220b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7230b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7240b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat = (Mat_SeqBAIJ *)baij->B->data;
7250b8dc8d2SHong Zhang       PetscReal    *rsum, *rsum2, vabs;
726899cda47SBarry Smith       PetscInt     *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
727d0f46423SBarry Smith       PetscInt      brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7280b8dc8d2SHong Zhang       MatScalar    *v;
7290b8dc8d2SHong Zhang 
7309566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mat->cmap->N, &rsum, mat->cmap->N, &rsum2));
7319566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(rsum, mat->cmap->N));
7320b8dc8d2SHong Zhang       /* Amat */
7339371c9d4SSatish Balay       v  = amat->a;
7349371c9d4SSatish Balay       jj = amat->j;
7350b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7360b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7370b8dc8d2SHong Zhang         nz   = amat->i[brow + 1] - amat->i[brow];
7380b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7399371c9d4SSatish Balay           gcol = bs * (rstart + *jj);
7409371c9d4SSatish Balay           jj++;
7410b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7420b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7439371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7449371c9d4SSatish Balay               v++;
7450b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7460b8dc8d2SHong Zhang               /* non-diagonal block */
7470b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7480b8dc8d2SHong Zhang             }
7490b8dc8d2SHong Zhang           }
7500b8dc8d2SHong Zhang         }
7519566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7520b8dc8d2SHong Zhang       }
7530b8dc8d2SHong Zhang       /* Bmat */
7549371c9d4SSatish Balay       v  = bmat->a;
7559371c9d4SSatish Balay       jj = bmat->j;
7560b8dc8d2SHong Zhang       for (brow = 0; brow < mbs; brow++) {
7570b8dc8d2SHong Zhang         grow = bs * (rstart + brow);
7580b8dc8d2SHong Zhang         nz   = bmat->i[brow + 1] - bmat->i[brow];
7590b8dc8d2SHong Zhang         for (bcol = 0; bcol < nz; bcol++) {
7609371c9d4SSatish Balay           gcol = bs * garray[*jj];
7619371c9d4SSatish Balay           jj++;
7620b8dc8d2SHong Zhang           for (col = 0; col < bs; col++) {
7630b8dc8d2SHong Zhang             for (row = 0; row < bs; row++) {
7649371c9d4SSatish Balay               vabs = PetscAbsScalar(*v);
7659371c9d4SSatish Balay               v++;
7660b8dc8d2SHong Zhang               rsum[gcol + col] += vabs;
7670b8dc8d2SHong Zhang               rsum[grow + row] += vabs;
7680b8dc8d2SHong Zhang             }
7690b8dc8d2SHong Zhang           }
7700b8dc8d2SHong Zhang         }
7719566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(nz * bs * bs));
7720b8dc8d2SHong Zhang       }
7731c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(rsum, rsum2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7740b8dc8d2SHong Zhang       *norm = 0.0;
775d0f46423SBarry Smith       for (col = 0; col < mat->cmap->N; col++) {
7760b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
7770b8dc8d2SHong Zhang       }
7789566063dSJacob Faibussowitsch       PetscCall(PetscFree2(rsum, rsum2));
779f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
780a30f8f8cSSatish Balay   }
7813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
782a30f8f8cSSatish Balay }
783a30f8f8cSSatish Balay 
78466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
785d71ae5a4SJacob Faibussowitsch {
786a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7871302d50aSBarry Smith   PetscInt      nstash, reallocs;
788a30f8f8cSSatish Balay 
789a30f8f8cSSatish Balay   PetscFunctionBegin;
7903ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
791a30f8f8cSSatish Balay 
7929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7949566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7959566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7969566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7979566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799a30f8f8cSSatish Balay }
800a30f8f8cSSatish Balay 
80166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
802d71ae5a4SJacob Faibussowitsch {
803a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
804a30f8f8cSSatish Balay   Mat_SeqSBAIJ *a    = (Mat_SeqSBAIJ *)baij->A->data;
80513f74950SBarry Smith   PetscInt      i, j, rstart, ncols, flg, bs2 = baij->bs2;
806e44c0bd4SBarry Smith   PetscInt     *row, *col;
807ace3abfcSBarry Smith   PetscBool     other_disassembled;
80813f74950SBarry Smith   PetscMPIInt   n;
809ace3abfcSBarry Smith   PetscBool     r1, r2, r3;
810a30f8f8cSSatish Balay   MatScalar    *val;
811a30f8f8cSSatish Balay 
81291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
813a30f8f8cSSatish Balay   PetscFunctionBegin;
8144cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
815a30f8f8cSSatish Balay     while (1) {
8169566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
817a30f8f8cSSatish Balay       if (!flg) break;
818a30f8f8cSSatish Balay 
819a30f8f8cSSatish Balay       for (i = 0; i < n;) {
820a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
82126fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
82226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
82326fbe8dcSKarl Rupp         }
824a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
825a30f8f8cSSatish Balay         else ncols = n - i;
826a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
8279566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
828a30f8f8cSSatish Balay         i = j;
829a30f8f8cSSatish Balay       }
830a30f8f8cSSatish Balay     }
8319566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
832a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
833a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
834a30f8f8cSSatish Balay        restore the original flags */
835a30f8f8cSSatish Balay     r1 = baij->roworiented;
836a30f8f8cSSatish Balay     r2 = a->roworiented;
83791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
83826fbe8dcSKarl Rupp 
839a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
840a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
84126fbe8dcSKarl Rupp 
84291c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworinted */
843a30f8f8cSSatish Balay     while (1) {
8449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
845a30f8f8cSSatish Balay       if (!flg) break;
846a30f8f8cSSatish Balay 
847a30f8f8cSSatish Balay       for (i = 0; i < n;) {
848a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
84926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
85026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
85126fbe8dcSKarl Rupp         }
852a30f8f8cSSatish Balay         if (j < n) ncols = j - i;
853a30f8f8cSSatish Balay         else ncols = n - i;
8549566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
855a30f8f8cSSatish Balay         i = j;
856a30f8f8cSSatish Balay       }
857a30f8f8cSSatish Balay     }
8589566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
85926fbe8dcSKarl Rupp 
860a30f8f8cSSatish Balay     baij->roworiented = r1;
861a30f8f8cSSatish Balay     a->roworiented    = r2;
86226fbe8dcSKarl Rupp 
86391c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworinted */
864a30f8f8cSSatish Balay   }
865a30f8f8cSSatish Balay 
8669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
8679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
868a30f8f8cSSatish Balay 
869a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
8706aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
871a30f8f8cSSatish Balay   /*
872a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
873a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
874a30f8f8cSSatish Balay   */
875a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8765f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
87748a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
878a30f8f8cSSatish Balay   }
879a30f8f8cSSatish Balay 
8809371c9d4SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */ }
8819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
8829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
883a30f8f8cSSatish Balay 
8849566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
88526fbe8dcSKarl Rupp 
886f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
8874f9cfa9eSBarry Smith 
8884f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8894f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
890e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
8911c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
892e56f5c9eSBarry Smith   }
8933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
894a30f8f8cSSatish Balay }
895a30f8f8cSSatish Balay 
896dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8979804daf3SBarry Smith #include <petscdraw.h>
898d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
899d71ae5a4SJacob Faibussowitsch {
900a30f8f8cSSatish Balay   Mat_MPISBAIJ     *baij = (Mat_MPISBAIJ *)mat->data;
901d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
9027da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
903ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
904b0a32e0cSBarry Smith   PetscViewer       sviewer;
905f3ef73ceSBarry Smith   PetscViewerFormat format;
906a30f8f8cSSatish Balay 
907a30f8f8cSSatish Balay   PetscFunctionBegin;
9089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
9099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
91032077d6dSBarry Smith   if (iascii) {
9119566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
912456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
913a30f8f8cSSatish Balay       MatInfo info;
9149566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9159566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9169566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9179371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
9189371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
9199566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9209566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9219566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9229566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9239566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9249566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9259566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9269566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9273ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
928fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9299566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9303ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
931c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
9323ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
933a30f8f8cSSatish Balay     }
934a30f8f8cSSatish Balay   }
935a30f8f8cSSatish Balay 
936a30f8f8cSSatish Balay   if (isdraw) {
937b0a32e0cSBarry Smith     PetscDraw draw;
938ace3abfcSBarry Smith     PetscBool isnull;
9399566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9409566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
9413ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
942a30f8f8cSSatish Balay   }
943a30f8f8cSSatish Balay 
9447da1fb6eSBarry Smith   {
945a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
946a30f8f8cSSatish Balay     Mat           A;
94765d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
94865d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
949d0f46423SBarry Smith     PetscInt      M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
950a30f8f8cSSatish Balay     MatScalar    *a;
9513e219373SBarry Smith     const char   *matname;
952a30f8f8cSSatish Balay 
953f204ca49SKris Buschelman     /* Should this be the same type as mat? */
9549566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
955dd400576SPatrick Sanan     if (rank == 0) {
9569566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
957a30f8f8cSSatish Balay     } else {
9589566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
959a30f8f8cSSatish Balay     }
9609566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISBAIJ));
9619566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
963a30f8f8cSSatish Balay 
964a30f8f8cSSatish Balay     /* copy over the A part */
96565d70643SHong Zhang     Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9669371c9d4SSatish Balay     ai   = Aloc->i;
9679371c9d4SSatish Balay     aj   = Aloc->j;
9689371c9d4SSatish Balay     a    = Aloc->a;
9699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
970a30f8f8cSSatish Balay 
971a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
972e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
97326fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
974a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
975e9f7bc9eSHong Zhang         col = (baij->cstartbs + aj[j]) * bs;
976a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9779566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
97826fbe8dcSKarl Rupp           col++;
97926fbe8dcSKarl Rupp           a += bs;
980a30f8f8cSSatish Balay         }
981a30f8f8cSSatish Balay       }
982a30f8f8cSSatish Balay     }
983a30f8f8cSSatish Balay     /* copy over the B part */
98465d70643SHong Zhang     Bloc = (Mat_SeqBAIJ *)baij->B->data;
9859371c9d4SSatish Balay     ai   = Bloc->i;
9869371c9d4SSatish Balay     aj   = Bloc->j;
9879371c9d4SSatish Balay     a    = Bloc->a;
988a30f8f8cSSatish Balay     for (i = 0; i < mbs; i++) {
989e9f7bc9eSHong Zhang       rvals[0] = bs * (baij->rstartbs + i);
99026fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
991a30f8f8cSSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
992a30f8f8cSSatish Balay         col = baij->garray[aj[j]] * bs;
993a30f8f8cSSatish Balay         for (k = 0; k < bs; k++) {
9949566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
99526fbe8dcSKarl Rupp           col++;
99626fbe8dcSKarl Rupp           a += bs;
997a30f8f8cSSatish Balay         }
998a30f8f8cSSatish Balay       }
999a30f8f8cSSatish Balay     }
10009566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10019566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
10029566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
1003a30f8f8cSSatish Balay     /*
1004a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
1005b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
1006a30f8f8cSSatish Balay     */
10079566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
100823a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1009dd400576SPatrick Sanan     if (rank == 0) {
101023a3927dSBarry Smith       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)(A->data))->A, matname));
10119566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)(A->data))->A, sviewer));
1012a30f8f8cSSatish Balay     }
10139566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10149566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
10159566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
1016a30f8f8cSSatish Balay   }
10173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1018a30f8f8cSSatish Balay }
1019a30f8f8cSSatish Balay 
1020618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1021618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1022d1654148SHong Zhang 
102366976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1024d71ae5a4SJacob Faibussowitsch {
1025ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1026a30f8f8cSSatish Balay 
1027a30f8f8cSSatish Balay   PetscFunctionBegin;
10289566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10309566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10319566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1032d1654148SHong Zhang   if (iascii || isdraw || issocket) {
10339566063dSJacob Faibussowitsch     PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
10341baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1036a30f8f8cSSatish Balay }
1037a30f8f8cSSatish Balay 
1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1039d71ae5a4SJacob Faibussowitsch {
1040547795f9SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1041eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
10426de40e93SBarry Smith   PetscScalar       *from;
10436de40e93SBarry Smith   const PetscScalar *x;
1044547795f9SHong Zhang 
1045547795f9SHong Zhang   PetscFunctionBegin;
1046547795f9SHong Zhang   /* diagonal part */
10479566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1048629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1049629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1050629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1051547795f9SHong Zhang 
1052547795f9SHong Zhang   /* subdiagonal part */
10535f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10549566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1055547795f9SHong Zhang 
1056547795f9SHong Zhang   /* copy x into the vec slvec0 */
10579566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10589566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1059547795f9SHong Zhang 
10609566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1063547795f9SHong Zhang 
10649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1066547795f9SHong Zhang   /* supperdiagonal part */
10679566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1069547795f9SHong Zhang }
1070547795f9SHong Zhang 
107166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1072d71ae5a4SJacob Faibussowitsch {
1073a9d4b620SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1074eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1075d9ca1df4SBarry Smith   PetscScalar       *from;
1076d9ca1df4SBarry Smith   const PetscScalar *x;
1077a9d4b620SHong Zhang 
1078a9d4b620SHong Zhang   PetscFunctionBegin;
1079a9d4b620SHong Zhang   /* diagonal part */
10809566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1081629a200eSBarry Smith   /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1082629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1083629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1084a9d4b620SHong Zhang 
1085a9d4b620SHong Zhang   /* subdiagonal part */
10869566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1087fc165ae2SBarry Smith 
1088a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
10899566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
10909566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
1091a9d4b620SHong Zhang 
10929566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
10939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
10949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
1095fc165ae2SBarry Smith 
10969566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10979566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1098a9d4b620SHong Zhang   /* supperdiagonal part */
10999566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
11003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1101a9d4b620SHong Zhang }
1102a9d4b620SHong Zhang 
110366976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
110466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1105d71ae5a4SJacob Faibussowitsch {
1106eb1ec7c1SStefano Zampini   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1107eb1ec7c1SStefano Zampini   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1108629a200eSBarry Smith   PetscScalar       *from;
1109eb1ec7c1SStefano Zampini   const PetscScalar *x;
1110eb1ec7c1SStefano Zampini 
1111eb1ec7c1SStefano Zampini   PetscFunctionBegin;
1112eb1ec7c1SStefano Zampini   /* diagonal part */
11139566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1114629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1115629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1116eb1ec7c1SStefano Zampini 
1117eb1ec7c1SStefano Zampini   /* subdiagonal part */
11185f80ce2aSJacob Faibussowitsch   PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
11199566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1120eb1ec7c1SStefano Zampini 
1121eb1ec7c1SStefano Zampini   /* copy x into the vec slvec0 */
11229566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11249566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1126eb1ec7c1SStefano Zampini 
11279566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11299566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1130eb1ec7c1SStefano Zampini 
1131eb1ec7c1SStefano Zampini   /* supperdiagonal part */
11329566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1134eb1ec7c1SStefano Zampini }
113566976f2fSJacob Faibussowitsch #endif
1136eb1ec7c1SStefano Zampini 
113766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1138d71ae5a4SJacob Faibussowitsch {
1139de8b6608SHong Zhang   Mat_MPISBAIJ      *a   = (Mat_MPISBAIJ *)A->data;
1140d0f46423SBarry Smith   PetscInt           mbs = a->mbs, bs = A->rmap->bs;
1141629a200eSBarry Smith   PetscScalar       *from;
1142d9ca1df4SBarry Smith   const PetscScalar *x;
1143a9d4b620SHong Zhang 
1144a9d4b620SHong Zhang   PetscFunctionBegin;
1145a9d4b620SHong Zhang   /* diagonal part */
11469566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1147629a200eSBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1148629a200eSBarry Smith   PetscCall(VecZeroEntries(a->slvec1b));
1149a9d4b620SHong Zhang 
1150a9d4b620SHong Zhang   /* subdiagonal part */
11519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1152a9d4b620SHong Zhang 
1153a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
11549566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &from));
11559566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
11569566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(from, x, bs * mbs));
11579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &from));
1158a9d4b620SHong Zhang 
11599566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
11619566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1162a9d4b620SHong Zhang 
1163a9d4b620SHong Zhang   /* supperdiagonal part */
11649566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1166a9d4b620SHong Zhang }
1167a9d4b620SHong Zhang 
1168a30f8f8cSSatish Balay /*
1169a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1170a30f8f8cSSatish Balay    diagonal block
1171a30f8f8cSSatish Balay */
117266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1173d71ae5a4SJacob Faibussowitsch {
1174a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1175a30f8f8cSSatish Balay 
1176a30f8f8cSSatish Balay   PetscFunctionBegin;
117708401ef6SPierre Jolivet   /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11789566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1180a30f8f8cSSatish Balay }
1181a30f8f8cSSatish Balay 
118266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1183d71ae5a4SJacob Faibussowitsch {
1184a30f8f8cSSatish Balay   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1185a30f8f8cSSatish Balay 
1186a30f8f8cSSatish Balay   PetscFunctionBegin;
11879566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11889566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1190a30f8f8cSSatish Balay }
1191a30f8f8cSSatish Balay 
119266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1193d71ae5a4SJacob Faibussowitsch {
1194d0d4cfc2SHong Zhang   Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1195d0d4cfc2SHong Zhang   PetscScalar  *vworkA, *vworkB, **pvA, **pvB, *v_p;
1196d0f46423SBarry Smith   PetscInt      bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1197d0f46423SBarry Smith   PetscInt      nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1198899cda47SBarry Smith   PetscInt     *cmap, *idx_p, cstart = mat->rstartbs;
1199d0d4cfc2SHong Zhang 
1200a30f8f8cSSatish Balay   PetscFunctionBegin;
12015f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1202d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
1203d0d4cfc2SHong Zhang 
1204d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1205d0d4cfc2SHong Zhang     /*
1206d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1207d0d4cfc2SHong Zhang     */
1208d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa  = (Mat_SeqSBAIJ *)mat->A->data;
1209d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba  = (Mat_SeqBAIJ *)mat->B->data;
1210d0d4cfc2SHong Zhang     PetscInt      max = 1, mbs = mat->mbs, tmp;
1211d0d4cfc2SHong Zhang     for (i = 0; i < mbs; i++) {
1212d0d4cfc2SHong Zhang       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
121326fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1214d0d4cfc2SHong Zhang     }
12159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1216d0d4cfc2SHong Zhang   }
1217d0d4cfc2SHong Zhang 
12185f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1219d0d4cfc2SHong Zhang   lrow = row - brstart; /* local row index */
1220d0d4cfc2SHong Zhang 
12219371c9d4SSatish Balay   pvA = &vworkA;
12229371c9d4SSatish Balay   pcA = &cworkA;
12239371c9d4SSatish Balay   pvB = &vworkB;
12249371c9d4SSatish Balay   pcB = &cworkB;
12259371c9d4SSatish Balay   if (!v) {
12269371c9d4SSatish Balay     pvA = NULL;
12279371c9d4SSatish Balay     pvB = NULL;
12289371c9d4SSatish Balay   }
12299371c9d4SSatish Balay   if (!idx) {
12309371c9d4SSatish Balay     pcA = NULL;
12319371c9d4SSatish Balay     if (!v) pcB = NULL;
12329371c9d4SSatish Balay   }
12339566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12349566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1235d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1236d0d4cfc2SHong Zhang 
1237d0d4cfc2SHong Zhang   cmap = mat->garray;
1238d0d4cfc2SHong Zhang   if (v || idx) {
1239d0d4cfc2SHong Zhang     if (nztot) {
1240d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1241d0d4cfc2SHong Zhang       PetscInt imark = -1;
1242d0d4cfc2SHong Zhang       if (v) {
1243d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1244d0d4cfc2SHong Zhang         for (i = 0; i < nzB; i++) {
1245d0d4cfc2SHong Zhang           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1246d0d4cfc2SHong Zhang           else break;
1247d0d4cfc2SHong Zhang         }
1248d0d4cfc2SHong Zhang         imark = i;
1249d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1250d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1251d0d4cfc2SHong Zhang       }
1252d0d4cfc2SHong Zhang       if (idx) {
1253d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1254d0d4cfc2SHong Zhang         if (imark > -1) {
1255ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1256d0d4cfc2SHong Zhang         } else {
1257d0d4cfc2SHong Zhang           for (i = 0; i < nzB; i++) {
125826fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1259d0d4cfc2SHong Zhang             else break;
1260d0d4cfc2SHong Zhang           }
1261d0d4cfc2SHong Zhang           imark = i;
1262d0d4cfc2SHong Zhang         }
1263d0d4cfc2SHong Zhang         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1264d0d4cfc2SHong Zhang         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1265d0d4cfc2SHong Zhang       }
1266d0d4cfc2SHong Zhang     } else {
1267f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1268f4259b30SLisandro Dalcin       if (v) *v = NULL;
1269d0d4cfc2SHong Zhang     }
1270d0d4cfc2SHong Zhang   }
1271d0d4cfc2SHong Zhang   *nz = nztot;
12729566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12739566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1275a30f8f8cSSatish Balay }
1276a30f8f8cSSatish Balay 
127766976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1278d71ae5a4SJacob Faibussowitsch {
1279a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1280a30f8f8cSSatish Balay 
1281a30f8f8cSSatish Balay   PetscFunctionBegin;
12825f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1283a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
12843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1285a30f8f8cSSatish Balay }
1286a30f8f8cSSatish Balay 
128766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1288d71ae5a4SJacob Faibussowitsch {
1289d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1290d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1291d0d4cfc2SHong Zhang 
1292d0d4cfc2SHong Zhang   PetscFunctionBegin;
1293d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
12943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1295d0d4cfc2SHong Zhang }
129666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1297d71ae5a4SJacob Faibussowitsch {
1298d0d4cfc2SHong Zhang   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1299d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1300d0d4cfc2SHong Zhang 
1301d0d4cfc2SHong Zhang   PetscFunctionBegin;
1302d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
13033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1304d0d4cfc2SHong Zhang }
1305d0d4cfc2SHong Zhang 
130666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1307d71ae5a4SJacob Faibussowitsch {
13085f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
13095f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
13102726fb6dSPierre Jolivet     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
13112726fb6dSPierre Jolivet 
13129566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->A));
13139566063dSJacob Faibussowitsch     PetscCall(MatConjugate(a->B));
13145f80ce2aSJacob Faibussowitsch   }
13153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13162726fb6dSPierre Jolivet }
13172726fb6dSPierre Jolivet 
131866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1319d71ae5a4SJacob Faibussowitsch {
132099cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
132199cafbc1SBarry Smith 
132299cafbc1SBarry Smith   PetscFunctionBegin;
13239566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
13249566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
13253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
132699cafbc1SBarry Smith }
132799cafbc1SBarry Smith 
132866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1329d71ae5a4SJacob Faibussowitsch {
133099cafbc1SBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
133199cafbc1SBarry Smith 
133299cafbc1SBarry Smith   PetscFunctionBegin;
13339566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
13349566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
13353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
133699cafbc1SBarry Smith }
133799cafbc1SBarry Smith 
13387dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
133936032a97SHong Zhang    Input: isrow       - distributed(parallel),
134036032a97SHong Zhang           iscol_local - locally owned (seq)
134136032a97SHong Zhang */
134266976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1343d71ae5a4SJacob Faibussowitsch {
13448f46ffcaSHong Zhang   PetscInt        sz1, sz2, *a1, *a2, i, j, k, nmatch;
13458f46ffcaSHong Zhang   const PetscInt *ptr1, *ptr2;
134636032a97SHong Zhang 
134736032a97SHong Zhang   PetscFunctionBegin;
134866976f2fSJacob Faibussowitsch   *flg = PETSC_FALSE;
13499566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &sz1));
13509566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_local, &sz2));
135166976f2fSJacob Faibussowitsch   if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13528f46ffcaSHong Zhang 
13539566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &ptr1));
13549566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol_local, &ptr2));
13558f46ffcaSHong Zhang 
13569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz1, &a1));
13579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(sz2, &a2));
13589566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a1, ptr1, sz1));
13599566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a2, ptr2, sz2));
13609566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz1, a1));
13619566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(sz2, a2));
13628f46ffcaSHong Zhang 
13638f46ffcaSHong Zhang   nmatch = 0;
13648f46ffcaSHong Zhang   k      = 0;
13658f46ffcaSHong Zhang   for (i = 0; i < sz1; i++) {
13668f46ffcaSHong Zhang     for (j = k; j < sz2; j++) {
13678f46ffcaSHong Zhang       if (a1[i] == a2[j]) {
13689371c9d4SSatish Balay         k = j;
13699371c9d4SSatish Balay         nmatch++;
13708f46ffcaSHong Zhang         break;
13718f46ffcaSHong Zhang       }
13728f46ffcaSHong Zhang     }
13738f46ffcaSHong Zhang   }
13749566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &ptr1));
13759566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13769566063dSJacob Faibussowitsch   PetscCall(PetscFree(a1));
13779566063dSJacob Faibussowitsch   PetscCall(PetscFree(a2));
13781098a8e8SHong Zhang   if (nmatch < sz1) {
13791098a8e8SHong Zhang     *flg = PETSC_FALSE;
13801098a8e8SHong Zhang   } else {
13811098a8e8SHong Zhang     *flg = PETSC_TRUE;
13821098a8e8SHong Zhang   }
13833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13848f46ffcaSHong Zhang }
138536032a97SHong Zhang 
138666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1387d71ae5a4SJacob Faibussowitsch {
1388*fdfbdca6SPierre Jolivet   Mat       C[2];
1389*fdfbdca6SPierre Jolivet   IS        iscol_local, isrow_local;
1390*fdfbdca6SPierre Jolivet   PetscInt  csize, csize_local, rsize;
1391*fdfbdca6SPierre Jolivet   PetscBool isequal, issorted, isidentity = PETSC_FALSE;
139236032a97SHong Zhang 
139336032a97SHong Zhang   PetscFunctionBegin;
13949566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1395*fdfbdca6SPierre Jolivet   PetscCall(ISGetLocalSize(isrow, &rsize));
139636032a97SHong Zhang   if (call == MAT_REUSE_MATRIX) {
13979566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13985f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
139936032a97SHong Zhang   } else {
14009566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
14019566063dSJacob Faibussowitsch     PetscCall(ISSorted(iscol_local, &issorted));
1402*fdfbdca6SPierre Jolivet     PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
14038f46ffcaSHong Zhang   }
1404*fdfbdca6SPierre Jolivet   PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1405*fdfbdca6SPierre Jolivet   if (!isequal) {
1406*fdfbdca6SPierre Jolivet     PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1407*fdfbdca6SPierre Jolivet     isidentity = (PetscBool)(mat->cmap->N == csize_local);
1408*fdfbdca6SPierre Jolivet     if (!isidentity) {
1409*fdfbdca6SPierre Jolivet       if (call == MAT_REUSE_MATRIX) {
1410*fdfbdca6SPierre Jolivet         PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1411*fdfbdca6SPierre Jolivet         PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1412*fdfbdca6SPierre Jolivet       } else {
1413*fdfbdca6SPierre Jolivet         PetscCall(ISAllGather(isrow, &isrow_local));
1414*fdfbdca6SPierre Jolivet         PetscCall(ISSorted(isrow_local, &issorted));
1415*fdfbdca6SPierre Jolivet         PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1416*fdfbdca6SPierre Jolivet       }
1417*fdfbdca6SPierre Jolivet     }
1418*fdfbdca6SPierre Jolivet   }
14197dae84e0SHong Zhang   /* now call MatCreateSubMatrix_MPIBAIJ() */
1420*fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1421*fdfbdca6SPierre Jolivet   if (!isequal && !isidentity) {
14228f46ffcaSHong Zhang     if (call == MAT_INITIAL_MATRIX) {
1423*fdfbdca6SPierre Jolivet       IS       intersect;
1424*fdfbdca6SPierre Jolivet       PetscInt ni;
1425*fdfbdca6SPierre Jolivet 
1426*fdfbdca6SPierre Jolivet       PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1427*fdfbdca6SPierre Jolivet       PetscCall(ISGetLocalSize(intersect, &ni));
1428*fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&intersect));
1429*fdfbdca6SPierre Jolivet       PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1430*fdfbdca6SPierre Jolivet     }
1431*fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1432*fdfbdca6SPierre Jolivet     PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1433*fdfbdca6SPierre Jolivet     PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1434*fdfbdca6SPierre Jolivet     if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1435*fdfbdca6SPierre Jolivet     else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1436*fdfbdca6SPierre Jolivet     else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1437*fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C));
1438*fdfbdca6SPierre Jolivet     PetscCall(MatDestroy(C + 1));
1439*fdfbdca6SPierre Jolivet   }
1440*fdfbdca6SPierre Jolivet   if (call == MAT_INITIAL_MATRIX) {
1441*fdfbdca6SPierre Jolivet     if (!isequal && !isidentity) {
1442*fdfbdca6SPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1443*fdfbdca6SPierre Jolivet       PetscCall(ISDestroy(&isrow_local));
1444*fdfbdca6SPierre Jolivet     }
14459566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
14478f46ffcaSHong Zhang   }
14483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14498f46ffcaSHong Zhang }
14508f46ffcaSHong Zhang 
145166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1452d71ae5a4SJacob Faibussowitsch {
1453a30f8f8cSSatish Balay   Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1454a30f8f8cSSatish Balay 
1455a30f8f8cSSatish Balay   PetscFunctionBegin;
14569566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14579566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1459a30f8f8cSSatish Balay }
1460a30f8f8cSSatish Balay 
146166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1462d71ae5a4SJacob Faibussowitsch {
1463a30f8f8cSSatish Balay   Mat_MPISBAIJ  *a = (Mat_MPISBAIJ *)matin->data;
1464a30f8f8cSSatish Balay   Mat            A = a->A, B = a->B;
14653966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1466a30f8f8cSSatish Balay 
1467a30f8f8cSSatish Balay   PetscFunctionBegin;
1468d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
146926fbe8dcSKarl Rupp 
14709566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
147126fbe8dcSKarl Rupp 
14729371c9d4SSatish Balay   isend[0] = info->nz_used;
14739371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14749371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14759371c9d4SSatish Balay   isend[3] = info->memory;
14769371c9d4SSatish Balay   isend[4] = info->mallocs;
147726fbe8dcSKarl Rupp 
14789566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
147926fbe8dcSKarl Rupp 
14809371c9d4SSatish Balay   isend[0] += info->nz_used;
14819371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14829371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14839371c9d4SSatish Balay   isend[3] += info->memory;
14849371c9d4SSatish Balay   isend[4] += info->mallocs;
1485a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1486a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1487a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1488a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1489a30f8f8cSSatish Balay     info->memory       = isend[3];
1490a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1491a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14921c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
149326fbe8dcSKarl Rupp 
1494a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1495a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1496a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1497a30f8f8cSSatish Balay     info->memory       = irecv[3];
1498a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1499a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
15001c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
150126fbe8dcSKarl Rupp 
1502a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1503a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1504a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1505a30f8f8cSSatish Balay     info->memory       = irecv[3];
1506a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
150798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1508a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1509a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1510a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
15113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1512a30f8f8cSSatish Balay }
1513a30f8f8cSSatish Balay 
151466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1515d71ae5a4SJacob Faibussowitsch {
1516a30f8f8cSSatish Balay   Mat_MPISBAIJ *a  = (Mat_MPISBAIJ *)A->data;
1517d0d4cfc2SHong Zhang   Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1518a30f8f8cSSatish Balay 
1519a30f8f8cSSatish Balay   PetscFunctionBegin;
1520e98b92d7SKris Buschelman   switch (op) {
1521512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1522e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
152328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1524a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1525c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1526e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
152743674050SBarry Smith     MatCheckPreallocated(A, 1);
15289566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15299566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1530e98b92d7SKris Buschelman     break;
1531e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
153243674050SBarry Smith     MatCheckPreallocated(A, 1);
15334e0d8c25SBarry Smith     a->roworiented = flg;
153426fbe8dcSKarl Rupp 
15359566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15369566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
1537e98b92d7SKris Buschelman     break;
15388c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1539d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1540d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1541d71ae5a4SJacob Faibussowitsch     break;
1542d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1543d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1544d71ae5a4SJacob Faibussowitsch     break;
1545d71ae5a4SJacob Faibussowitsch   case MAT_USE_HASH_TABLE:
1546d71ae5a4SJacob Faibussowitsch     a->ht_flag = flg;
1547d71ae5a4SJacob Faibussowitsch     break;
1548d71ae5a4SJacob Faibussowitsch   case MAT_HERMITIAN:
1549d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1550d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
15510f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1552eb1ec7c1SStefano Zampini     if (flg) { /* need different mat-vec ops */
1553547795f9SHong Zhang       A->ops->mult             = MatMult_MPISBAIJ_Hermitian;
1554eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ_Hermitian;
1555eb1ec7c1SStefano Zampini       A->ops->multtranspose    = NULL;
1556eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = NULL;
1557b94d7dedSBarry Smith       A->symmetric             = PETSC_BOOL3_FALSE;
1558eb1ec7c1SStefano Zampini     }
15590f2140c7SStefano Zampini #endif
1560eeffb40dSHong Zhang     break;
1561ffa07934SHong Zhang   case MAT_SPD:
1562d71ae5a4SJacob Faibussowitsch   case MAT_SYMMETRIC:
1563d71ae5a4SJacob Faibussowitsch     MatCheckPreallocated(A, 1);
1564d71ae5a4SJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1565eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1566eb1ec7c1SStefano Zampini     if (flg) { /* restore to use default mat-vec ops */
1567eb1ec7c1SStefano Zampini       A->ops->mult             = MatMult_MPISBAIJ;
1568eb1ec7c1SStefano Zampini       A->ops->multadd          = MatMultAdd_MPISBAIJ;
1569eb1ec7c1SStefano Zampini       A->ops->multtranspose    = MatMult_MPISBAIJ;
1570eb1ec7c1SStefano Zampini       A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1571eb1ec7c1SStefano Zampini     }
1572eb1ec7c1SStefano Zampini #endif
1573eeffb40dSHong Zhang     break;
157477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
157543674050SBarry Smith     MatCheckPreallocated(A, 1);
15769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
1577eeffb40dSHong Zhang     break;
15789a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1579b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
15805f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix must be symmetric");
15819566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
158277e54ba9SKris Buschelman     break;
1583d71ae5a4SJacob Faibussowitsch   case MAT_SPD_ETERNAL:
1584d71ae5a4SJacob Faibussowitsch     break;
1585d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_LOWER_TRIANGULAR:
1586d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1587d71ae5a4SJacob Faibussowitsch     break;
1588d71ae5a4SJacob Faibussowitsch   case MAT_ERROR_LOWER_TRIANGULAR:
1589d71ae5a4SJacob Faibussowitsch     aA->ignore_ltriangular = flg;
1590d71ae5a4SJacob Faibussowitsch     break;
1591d71ae5a4SJacob Faibussowitsch   case MAT_GETROW_UPPERTRIANGULAR:
1592d71ae5a4SJacob Faibussowitsch     aA->getrow_utriangular = flg;
1593d71ae5a4SJacob Faibussowitsch     break;
1594d71ae5a4SJacob Faibussowitsch   default:
1595d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
1596a30f8f8cSSatish Balay   }
15973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1598a30f8f8cSSatish Balay }
1599a30f8f8cSSatish Balay 
160066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1601d71ae5a4SJacob Faibussowitsch {
1602a30f8f8cSSatish Balay   PetscFunctionBegin;
16037fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1604cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX) {
16059566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1606cf37664fSBarry Smith   } else if (reuse == MAT_REUSE_MATRIX) {
16079566063dSJacob Faibussowitsch     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1608fc4dec0aSBarry Smith   }
16093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1610a30f8f8cSSatish Balay }
1611a30f8f8cSSatish Balay 
161266976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1613d71ae5a4SJacob Faibussowitsch {
1614a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1615a30f8f8cSSatish Balay   Mat           a = baij->A, b = baij->B;
16165e90f9d9SHong Zhang   PetscInt      nv, m, n;
1617ace3abfcSBarry Smith   PetscBool     flg;
1618a30f8f8cSSatish Balay 
1619a30f8f8cSSatish Balay   PetscFunctionBegin;
1620a30f8f8cSSatish Balay   if (ll != rr) {
16219566063dSJacob Faibussowitsch     PetscCall(VecEqual(ll, rr, &flg));
16225f80ce2aSJacob Faibussowitsch     PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "For symmetric format, left and right scaling vectors must be same");
1623a30f8f8cSSatish Balay   }
16243ba16761SJacob Faibussowitsch   if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1625b3bf805bSHong Zhang 
16269566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
16275f80ce2aSJacob Faibussowitsch   PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1628b3bf805bSHong Zhang 
16299566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(rr, &nv));
16305f80ce2aSJacob Faibussowitsch   PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
16315e90f9d9SHong Zhang 
16329566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
16335e90f9d9SHong Zhang 
16345e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1635dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16365e90f9d9SHong Zhang 
16375e90f9d9SHong Zhang   /* scale the diagonal part */
1638dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
1639a30f8f8cSSatish Balay 
16405e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
16419566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1642dbbe0bcdSBarry Smith   PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
16433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1644a30f8f8cSSatish Balay }
1645a30f8f8cSSatish Balay 
164666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1647d71ae5a4SJacob Faibussowitsch {
1648f3566a2aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1649a30f8f8cSSatish Balay 
1650a30f8f8cSSatish Balay   PetscFunctionBegin;
16519566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
16523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1653a30f8f8cSSatish Balay }
1654a30f8f8cSSatish Balay 
16556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1656a30f8f8cSSatish Balay 
165766976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1658d71ae5a4SJacob Faibussowitsch {
1659a30f8f8cSSatish Balay   Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1660a30f8f8cSSatish Balay   Mat           a, b, c, d;
1661ace3abfcSBarry Smith   PetscBool     flg;
1662a30f8f8cSSatish Balay 
1663a30f8f8cSSatish Balay   PetscFunctionBegin;
16649371c9d4SSatish Balay   a = matA->A;
16659371c9d4SSatish Balay   b = matA->B;
16669371c9d4SSatish Balay   c = matB->A;
16679371c9d4SSatish Balay   d = matB->B;
1668a30f8f8cSSatish Balay 
16699566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
167048a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
16711c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1673a30f8f8cSSatish Balay }
1674a30f8f8cSSatish Balay 
167566976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1676d71ae5a4SJacob Faibussowitsch {
16774c7a3774SStefano Zampini   PetscBool isbaij;
16783c896bc6SHong Zhang 
16793c896bc6SHong Zhang   PetscFunctionBegin;
16809566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16815f80ce2aSJacob Faibussowitsch   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16823c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16833c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16849566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(A));
16859566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
16869566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(A));
16873c896bc6SHong Zhang   } else {
16884c7a3774SStefano Zampini     Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16894c7a3774SStefano Zampini     Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16904c7a3774SStefano Zampini 
16919566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
16929566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
16933c896bc6SHong Zhang   }
16949566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
16953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16963c896bc6SHong Zhang }
16973c896bc6SHong Zhang 
169866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1699d71ae5a4SJacob Faibussowitsch {
17004fe895cdSHong Zhang   Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
17014fe895cdSHong Zhang   PetscBLASInt  bnz, one                          = 1;
17024fe895cdSHong Zhang   Mat_SeqSBAIJ *xa, *ya;
17034fe895cdSHong Zhang   Mat_SeqBAIJ  *xb, *yb;
17044fe895cdSHong Zhang 
17054fe895cdSHong Zhang   PetscFunctionBegin;
17064fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17074fe895cdSHong Zhang     PetscScalar alpha = a;
17084fe895cdSHong Zhang     xa                = (Mat_SeqSBAIJ *)xx->A->data;
17094fe895cdSHong Zhang     ya                = (Mat_SeqSBAIJ *)yy->A->data;
17109566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1711792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
17124fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
17134fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
17149566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1715792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
17169566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1717ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
17189566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
17199566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
17209566063dSJacob Faibussowitsch     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
17214fe895cdSHong Zhang   } else {
17224de5dceeSHong Zhang     Mat       B;
17234de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
17245f80ce2aSJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
17259566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(X));
17269566063dSJacob Faibussowitsch     PetscCall(MatGetRowUpperTriangular(Y));
17279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
17289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
17299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
17309566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
17319566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
17329566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
17339566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISBAIJ));
17349566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
17359566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
17369566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
17379566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
17389566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
17399566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
17409566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
17419566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(X));
17429566063dSJacob Faibussowitsch     PetscCall(MatRestoreRowUpperTriangular(Y));
17434fe895cdSHong Zhang   }
17443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17454fe895cdSHong Zhang }
17464fe895cdSHong Zhang 
174766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1748d71ae5a4SJacob Faibussowitsch {
17491302d50aSBarry Smith   PetscInt  i;
1750afebec48SHong Zhang   PetscBool flg;
1751a5e6ed63SBarry Smith 
17526849ba73SBarry Smith   PetscFunctionBegin;
17539566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1754a5e6ed63SBarry Smith   for (i = 0; i < n; i++) {
17559566063dSJacob Faibussowitsch     PetscCall(ISEqual(irow[i], icol[i], &flg));
175648a46eb9SPierre Jolivet     if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17574dcd73b1SHong Zhang   }
17583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1759a5e6ed63SBarry Smith }
1760a5e6ed63SBarry Smith 
176166976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1762d71ae5a4SJacob Faibussowitsch {
17637d68702bSBarry Smith   Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17646f33a894SBarry Smith   Mat_SeqSBAIJ *aij  = (Mat_SeqSBAIJ *)maij->A->data;
17657d68702bSBarry Smith 
17667d68702bSBarry Smith   PetscFunctionBegin;
17676f33a894SBarry Smith   if (!Y->preallocated) {
17689566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17696f33a894SBarry Smith   } else if (!aij->nz) {
1770b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
17719566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1772b83222d8SBarry Smith     aij->nonew = nonew;
17737d68702bSBarry Smith   }
17749566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17767d68702bSBarry Smith }
17777d68702bSBarry Smith 
177866976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISBAIJ(Mat A, PetscBool *missing, PetscInt *d)
1779d71ae5a4SJacob Faibussowitsch {
17803b49f96aSBarry Smith   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
17813b49f96aSBarry Smith 
17823b49f96aSBarry Smith   PetscFunctionBegin;
17835f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
17849566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
17853b49f96aSBarry Smith   if (d) {
17863b49f96aSBarry Smith     PetscInt rstart;
17879566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
17883b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
17893b49f96aSBarry Smith   }
17903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17913b49f96aSBarry Smith }
17923b49f96aSBarry Smith 
179366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1794d71ae5a4SJacob Faibussowitsch {
1795a5b7ff6bSBarry Smith   PetscFunctionBegin;
1796a5b7ff6bSBarry Smith   *a = ((Mat_MPISBAIJ *)A->data)->A;
17973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1798a5b7ff6bSBarry Smith }
17993b49f96aSBarry Smith 
180017ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
180117ea310bSPierre Jolivet {
180217ea310bSPierre Jolivet   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
180317ea310bSPierre Jolivet 
180417ea310bSPierre Jolivet   PetscFunctionBegin;
180517ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep));       // possibly keep zero diagonal coefficients
180617ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
180717ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
180817ea310bSPierre Jolivet }
180917ea310bSPierre Jolivet 
18103964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1811a30f8f8cSSatish Balay                                        MatGetRow_MPISBAIJ,
1812a30f8f8cSSatish Balay                                        MatRestoreRow_MPISBAIJ,
1813a9d4b620SHong Zhang                                        MatMult_MPISBAIJ,
181497304618SKris Buschelman                                        /*  4*/ MatMultAdd_MPISBAIJ,
1815431c96f7SBarry Smith                                        MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1816431c96f7SBarry Smith                                        MatMultAdd_MPISBAIJ,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819f4259b30SLisandro Dalcin                                        NULL,
1820f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
182341f059aeSBarry Smith                                        MatSOR_MPISBAIJ,
1824a30f8f8cSSatish Balay                                        MatTranspose_MPISBAIJ,
182597304618SKris Buschelman                                        /* 15*/ MatGetInfo_MPISBAIJ,
1826a30f8f8cSSatish Balay                                        MatEqual_MPISBAIJ,
1827a30f8f8cSSatish Balay                                        MatGetDiagonal_MPISBAIJ,
1828a30f8f8cSSatish Balay                                        MatDiagonalScale_MPISBAIJ,
1829a30f8f8cSSatish Balay                                        MatNorm_MPISBAIJ,
183097304618SKris Buschelman                                        /* 20*/ MatAssemblyBegin_MPISBAIJ,
1831a30f8f8cSSatish Balay                                        MatAssemblyEnd_MPISBAIJ,
1832a30f8f8cSSatish Balay                                        MatSetOption_MPISBAIJ,
1833a30f8f8cSSatish Balay                                        MatZeroEntries_MPISBAIJ,
1834f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
183926cec326SBarry Smith                                        /* 29*/ MatSetUp_MPI_Hash,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPISBAIJ,
1843f4259b30SLisandro Dalcin                                        NULL,
1844d519adbfSMatthew Knepley                                        /* 34*/ MatDuplicate_MPISBAIJ,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849d519adbfSMatthew Knepley                                        /* 39*/ MatAXPY_MPISBAIJ,
18507dae84e0SHong Zhang                                        MatCreateSubMatrices_MPISBAIJ,
1851d94109b8SHong Zhang                                        MatIncreaseOverlap_MPISBAIJ,
1852a30f8f8cSSatish Balay                                        MatGetValues_MPISBAIJ,
18533c896bc6SHong Zhang                                        MatCopy_MPISBAIJ,
1854f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1855a30f8f8cSSatish Balay                                        MatScale_MPISBAIJ,
18567d68702bSBarry Smith                                        MatShift_MPISBAIJ,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1860f4259b30SLisandro Dalcin                                        NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        /* 54*/ NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866a30f8f8cSSatish Balay                                        MatSetUnfactored_MPISBAIJ,
1867f4259b30SLisandro Dalcin                                        NULL,
1868a30f8f8cSSatish Balay                                        MatSetValuesBlocked_MPISBAIJ,
18697dae84e0SHong Zhang                                        /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879d519adbfSMatthew Knepley                                        /* 69*/ MatGetRowMaxAbs_MPISBAIJ,
1880f4259b30SLisandro Dalcin                                        NULL,
188128d58a37SPierre Jolivet                                        MatConvert_MPISBAIJ_Basic,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
18935bba2384SShri Abhyankar                                        MatLoad_MPISBAIJ,
1894f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
19122726fb6dSPierre Jolivet                                        MatConjugate_MPISBAIJ,
1913f4259b30SLisandro Dalcin                                        NULL,
1914f4259b30SLisandro Dalcin                                        /*104*/ NULL,
191599cafbc1SBarry Smith                                        MatRealPart_MPISBAIJ,
1916d0d4cfc2SHong Zhang                                        MatImaginaryPart_MPISBAIJ,
1917d0d4cfc2SHong Zhang                                        MatGetRowUpperTriangular_MPISBAIJ,
191895936485SShri Abhyankar                                        MatRestoreRowUpperTriangular_MPISBAIJ,
1919f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1920f4259b30SLisandro Dalcin                                        NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
19233b49f96aSBarry Smith                                        MatMissingDiagonal_MPISBAIJ,
1924f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
1928f4259b30SLisandro Dalcin                                        NULL,
1929f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1930f4259b30SLisandro Dalcin                                        NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        NULL,
1933f4259b30SLisandro Dalcin                                        NULL,
1934f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1935f4259b30SLisandro Dalcin                                        NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        NULL,
1938f4259b30SLisandro Dalcin                                        NULL,
1939f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1940f4259b30SLisandro Dalcin                                        NULL,
1941f4259b30SLisandro Dalcin                                        NULL,
1942f4259b30SLisandro Dalcin                                        NULL,
1943f4259b30SLisandro Dalcin                                        NULL,
1944f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1945f4259b30SLisandro Dalcin                                        NULL,
1946f4259b30SLisandro Dalcin                                        NULL,
1947f4259b30SLisandro Dalcin                                        NULL,
1948f4259b30SLisandro Dalcin                                        NULL,
194946533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
1950f4259b30SLisandro Dalcin                                        NULL,
1951f4259b30SLisandro Dalcin                                        NULL,
1952f4259b30SLisandro Dalcin                                        NULL,
1953f4259b30SLisandro Dalcin                                        NULL,
1954d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1955d70f29a3SPierre Jolivet                                        NULL,
1956d70f29a3SPierre Jolivet                                        NULL,
195799a7f59eSMark Adams                                        NULL,
195899a7f59eSMark Adams                                        NULL,
19597fb60732SBarry Smith                                        NULL,
1960dec0b466SHong Zhang                                        /*150*/ NULL,
196117ea310bSPierre Jolivet                                        MatEliminateZeros_MPISBAIJ};
1962a30f8f8cSSatish Balay 
196366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1964d71ae5a4SJacob Faibussowitsch {
1965476417e5SBarry Smith   Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1966535b19f3SBarry Smith   PetscInt      i, mbs, Mbs;
19675d2a9ed1SStefano Zampini   PetscMPIInt   size;
1968a23d5eceSKris Buschelman 
1969a23d5eceSKris Buschelman   PetscFunctionBegin;
1970ad79cf63SBarry Smith   if (B->hash_active) {
1971aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
1972ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
1973ad79cf63SBarry Smith   }
1974ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
19759566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
19769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
19779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
19789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19795f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19805f80ce2aSJacob Faibussowitsch   PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1981899cda47SBarry Smith 
1982d0f46423SBarry Smith   mbs = B->rmap->n / bs;
1983d0f46423SBarry Smith   Mbs = B->rmap->N / bs;
19845f80ce2aSJacob Faibussowitsch   PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1985a23d5eceSKris Buschelman 
1986d0f46423SBarry Smith   B->rmap->bs = bs;
1987a23d5eceSKris Buschelman   b->bs2      = bs * bs;
1988a23d5eceSKris Buschelman   b->mbs      = mbs;
1989a23d5eceSKris Buschelman   b->Mbs      = Mbs;
1990de64b629SHong Zhang   b->nbs      = B->cmap->n / bs;
1991de64b629SHong Zhang   b->Nbs      = B->cmap->N / bs;
1992a23d5eceSKris Buschelman 
1993ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1994d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
1995d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
1996a23d5eceSKris Buschelman 
1997d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
1998d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
1999a23d5eceSKris Buschelman 
2000cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2001eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2002cb7b82ddSBarry Smith #else
20039566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2004cb7b82ddSBarry Smith #endif
20059566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
20069566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
20079566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
20089566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0));
20099566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec0b));
20109566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1));
20119566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1a));
20129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->slvec1b));
20139566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->sMvctx));
2014cb7b82ddSBarry Smith 
20159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
20169566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
20179566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
20189566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
20199566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2020cb7b82ddSBarry Smith 
2021ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
20229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
20239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
20249566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQSBAIJ));
2025a23d5eceSKris Buschelman 
20269566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
20279566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
202826fbe8dcSKarl Rupp 
2029526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2030cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2031cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
20323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2033a23d5eceSKris Buschelman }
2034a23d5eceSKris Buschelman 
203566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2036d71ae5a4SJacob Faibussowitsch {
203702106b30SBarry Smith   PetscInt        m, rstart, cend;
2038f4259b30SLisandro Dalcin   PetscInt        i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2039f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2040f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2041bb80cfbbSStefano Zampini   PetscBool       roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
20423bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2043dfb205c3SBarry Smith 
2044dfb205c3SBarry Smith   PetscFunctionBegin;
20455f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
20469566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
20479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
20489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
20499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
20509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2051dfb205c3SBarry Smith   m      = B->rmap->n / bs;
2052dfb205c3SBarry Smith   rstart = B->rmap->rstart / bs;
2053dfb205c3SBarry Smith   cend   = B->cmap->rend / bs;
2054dfb205c3SBarry Smith 
20555f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
20569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2057dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2058dfb205c3SBarry Smith     nz = ii[i + 1] - ii[i];
20595f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20600cd7f59aSBarry Smith     /* count the ones on the diagonal and above, split into diagonal and off diagonal portions. */
2061dfb205c3SBarry Smith     JJ = jj + ii[i];
20620cd7f59aSBarry Smith     bd = 0;
2063dfb205c3SBarry Smith     for (j = 0; j < nz; j++) {
20640cd7f59aSBarry Smith       if (*JJ >= i + rstart) break;
2065dfb205c3SBarry Smith       JJ++;
20660cd7f59aSBarry Smith       bd++;
2067dfb205c3SBarry Smith     }
2068dfb205c3SBarry Smith     d = 0;
2069dfb205c3SBarry Smith     for (; j < nz; j++) {
2070dfb205c3SBarry Smith       if (*JJ++ >= cend) break;
2071dfb205c3SBarry Smith       d++;
2072dfb205c3SBarry Smith     }
2073dfb205c3SBarry Smith     d_nnz[i] = d;
20740cd7f59aSBarry Smith     o_nnz[i] = nz - d - bd;
20750cd7f59aSBarry Smith     nz       = nz - bd;
20760cd7f59aSBarry Smith     nz_max   = PetscMax(nz_max, nz);
2077dfb205c3SBarry Smith   }
20789566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20799566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2081dfb205c3SBarry Smith 
2082dfb205c3SBarry Smith   values = (PetscScalar *)V;
208348a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2084dfb205c3SBarry Smith   for (i = 0; i < m; i++) {
2085dfb205c3SBarry Smith     PetscInt        row   = i + rstart;
2086dfb205c3SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2087dfb205c3SBarry Smith     const PetscInt *icols = jj + ii[i];
2088bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2089dfb205c3SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20909566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2091bb80cfbbSStefano Zampini     } else { /* block ordering does not match so we can only insert one block at a time. */
2092bb80cfbbSStefano Zampini       PetscInt j;
20930cd7f59aSBarry Smith       for (j = 0; j < ncols; j++) {
20940cd7f59aSBarry Smith         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20959566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20960cd7f59aSBarry Smith       }
20970cd7f59aSBarry Smith     }
2098dfb205c3SBarry Smith   }
2099dfb205c3SBarry Smith 
21009566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
21013bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
21023bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
21039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21053bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
21063bd0feecSPierre Jolivet 
21079566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
21083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2109dfb205c3SBarry Smith }
2110dfb205c3SBarry Smith 
21110bad9183SKris Buschelman /*MC
2112fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2113828413b8SBarry Smith    based on block compressed sparse row format.  Only the upper triangular portion of the "diagonal" portion of
2114828413b8SBarry Smith    the matrix is stored.
2115828413b8SBarry Smith 
2116828413b8SBarry Smith    For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
211711a5261eSBarry Smith    can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
21180bad9183SKris Buschelman 
21192ef1f0ffSBarry Smith    Options Database Key:
212011a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
21210bad9183SKris Buschelman 
21222ef1f0ffSBarry Smith    Level: beginner
21232ef1f0ffSBarry Smith 
212411a5261eSBarry Smith    Note:
2125476417e5SBarry Smith      The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2126476417e5SBarry Smith      diagonal portion of the matrix of each process has to less than or equal the number of columns.
2127476417e5SBarry Smith 
21281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
21290bad9183SKris Buschelman M*/
21300bad9183SKris Buschelman 
2131d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2132d71ae5a4SJacob Faibussowitsch {
2133b5df2d14SHong Zhang   Mat_MPISBAIJ *b;
213494ae4db5SBarry Smith   PetscBool     flg = PETSC_FALSE;
2135b5df2d14SHong Zhang 
2136b5df2d14SHong Zhang   PetscFunctionBegin;
21374dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2138b0a32e0cSBarry Smith   B->data   = (void *)b;
2139aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2140b5df2d14SHong Zhang 
2141b5df2d14SHong Zhang   B->ops->destroy = MatDestroy_MPISBAIJ;
2142b5df2d14SHong Zhang   B->ops->view    = MatView_MPISBAIJ;
2143b5df2d14SHong Zhang   B->assembled    = PETSC_FALSE;
2144b5df2d14SHong Zhang   B->insertmode   = NOT_SET_VALUES;
214526fbe8dcSKarl Rupp 
21469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
21479566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2148b5df2d14SHong Zhang 
2149b5df2d14SHong Zhang   /* build local table of row and column ownerships */
21509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2151b5df2d14SHong Zhang 
2152b5df2d14SHong Zhang   /* build cache for off array entries formed */
21539566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
215426fbe8dcSKarl Rupp 
2155b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
21560298fd71SBarry Smith   b->colmap      = NULL;
21570298fd71SBarry Smith   b->garray      = NULL;
2158b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
2159b5df2d14SHong Zhang 
2160b5df2d14SHong Zhang   /* stuff used in block assembly */
2161f4259b30SLisandro Dalcin   b->barray = NULL;
2162b5df2d14SHong Zhang 
2163b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
2164f4259b30SLisandro Dalcin   b->lvec    = NULL;
2165f4259b30SLisandro Dalcin   b->Mvctx   = NULL;
2166f4259b30SLisandro Dalcin   b->slvec0  = NULL;
2167f4259b30SLisandro Dalcin   b->slvec0b = NULL;
2168f4259b30SLisandro Dalcin   b->slvec1  = NULL;
2169f4259b30SLisandro Dalcin   b->slvec1a = NULL;
2170f4259b30SLisandro Dalcin   b->slvec1b = NULL;
2171f4259b30SLisandro Dalcin   b->sMvctx  = NULL;
2172b5df2d14SHong Zhang 
2173b5df2d14SHong Zhang   /* stuff for MatGetRow() */
2174f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2175f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2176b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
2177b5df2d14SHong Zhang 
2178b5df2d14SHong Zhang   /* hash table stuff */
2179f4259b30SLisandro Dalcin   b->ht           = NULL;
2180f4259b30SLisandro Dalcin   b->hd           = NULL;
2181b5df2d14SHong Zhang   b->ht_size      = 0;
2182b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
2183b5df2d14SHong Zhang   b->ht_fact      = 0;
2184b5df2d14SHong Zhang   b->ht_total_ct  = 0;
2185b5df2d14SHong Zhang   b->ht_insert_ct = 0;
2186b5df2d14SHong Zhang 
21877dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21887a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
21897a868f3eSHong Zhang 
2190f4259b30SLisandro Dalcin   b->in_loc = NULL;
2191f4259b30SLisandro Dalcin   b->v_loc  = NULL;
219259ffdab8SBarry Smith   b->n_loc  = 0;
219394ae4db5SBarry Smith 
21949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21986214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
22006214f412SHong Zhang #endif
2201d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
22029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2203d24d4204SJose E. Roman #endif
22049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
22059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2206aa5a9175SDahai Guo 
2207b94d7dedSBarry Smith   B->symmetric                   = PETSC_BOOL3_TRUE;
2208b94d7dedSBarry Smith   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
2209b94d7dedSBarry Smith   B->symmetry_eternal            = PETSC_TRUE;
2210b94d7dedSBarry Smith   B->structural_symmetry_eternal = PETSC_TRUE;
2211eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
2212b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_FALSE;
2213eb1ec7c1SStefano Zampini #else
2214b94d7dedSBarry Smith   B->hermitian = PETSC_BOOL3_TRUE;
2215eb1ec7c1SStefano Zampini #endif
221613647f61SHong Zhang 
22179566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2218d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
22199566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
222094ae4db5SBarry Smith   if (flg) {
222194ae4db5SBarry Smith     PetscReal fact = 1.39;
22229566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
22239566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
222494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
22259566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
22269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
222794ae4db5SBarry Smith   }
2228d0609cedSBarry Smith   PetscOptionsEnd();
22293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2230b5df2d14SHong Zhang }
2231b5df2d14SHong Zhang 
22322920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2233209238afSKris Buschelman /*MC
2234002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2235209238afSKris Buschelman 
223611a5261eSBarry Smith    This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
223711a5261eSBarry Smith    and `MATMPISBAIJ` otherwise.
2238209238afSKris Buschelman 
223911a5261eSBarry Smith    Options Database Key:
2240c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2241209238afSKris Buschelman 
2242209238afSKris Buschelman   Level: beginner
2243209238afSKris Buschelman 
22441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2245209238afSKris Buschelman M*/
2246209238afSKris Buschelman 
2247b5df2d14SHong Zhang /*@C
2248b5df2d14SHong Zhang   MatMPISBAIJSetPreallocation - For good matrix assembly performance
2249b5df2d14SHong Zhang   the user should preallocate the matrix storage by setting the parameters
2250b5df2d14SHong Zhang   d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2251b5df2d14SHong Zhang   performance can be increased by more than a factor of 50.
2252b5df2d14SHong Zhang 
2253c3339decSBarry Smith   Collective
2254b5df2d14SHong Zhang 
2255b5df2d14SHong Zhang   Input Parameters:
22561c4f3114SJed Brown + B     - the matrix
2257bb7ae925SBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2258bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2259b5df2d14SHong Zhang . d_nz  - number of block nonzeros per block row in diagonal portion of local
2260b5df2d14SHong Zhang            submatrix  (same for all local rows)
2261b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22626d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
22632ef1f0ffSBarry Smith            (possibly different for each block row) or `NULL`.  If you plan to factor the matrix you must leave room
226495742e49SBarry Smith            for the diagonal entry and set a value even if it is zero.
2265b5df2d14SHong Zhang . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2266b5df2d14SHong Zhang            submatrix (same for all local rows).
2267b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2268c2fc9fa9SBarry Smith            off-diagonal portion of the local submatrix that is right of the diagonal
22692ef1f0ffSBarry Smith            (possibly different for each block row) or `NULL`.
2270b5df2d14SHong Zhang 
2271b5df2d14SHong Zhang   Options Database Keys:
2272a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2273b5df2d14SHong Zhang                      block calculations (much slower)
2274a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2275b5df2d14SHong Zhang 
22762ef1f0ffSBarry Smith   Level: intermediate
22772ef1f0ffSBarry Smith 
2278b5df2d14SHong Zhang   Notes:
2279b5df2d14SHong Zhang 
228011a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2281b5df2d14SHong Zhang   than it must be used on all processors that share the object for that argument.
2282b5df2d14SHong Zhang 
228349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
228449a6f317SBarry Smith 
2285b5df2d14SHong Zhang   Storage Information:
2286b5df2d14SHong Zhang   For a square global matrix we define each processor's diagonal portion
2287b5df2d14SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
2288b5df2d14SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
2289b5df2d14SHong Zhang   local matrix (a rectangular submatrix).
2290b5df2d14SHong Zhang 
2291b5df2d14SHong Zhang   The user can specify preallocated storage for the diagonal part of
22922ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
22932ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2294b5df2d14SHong Zhang   memory allocation.  Likewise, specify preallocated storage for the
22952ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2296b5df2d14SHong Zhang 
229711a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
2298aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22992ef1f0ffSBarry Smith   You can also run with the option `-info` and look for messages with the string
2300aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
2301aa95bbe8SBarry Smith 
2302b5df2d14SHong Zhang   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2303b5df2d14SHong Zhang   the figure below we depict these three local rows and all columns (0-11).
2304b5df2d14SHong Zhang 
2305b5df2d14SHong Zhang .vb
2306b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
2307a4b1a0f6SJed Brown           --------------------------
2308c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2309c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2310c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2311a4b1a0f6SJed Brown           --------------------------
2312b5df2d14SHong Zhang .ve
2313b5df2d14SHong Zhang 
2314b5df2d14SHong Zhang   Thus, any entries in the d locations are stored in the d (diagonal)
2315b5df2d14SHong Zhang   submatrix, and any entries in the o locations are stored in the
23166d10fdaeSSatish Balay   o (off-diagonal) submatrix.  Note that the d matrix is stored in
231711a5261eSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2318b5df2d14SHong Zhang 
23192ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23206d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
23212ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2322c2fc9fa9SBarry Smith 
2323b5df2d14SHong Zhang   In general, for PDE problems in which most nonzeros are near the diagonal,
23242ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2325b5df2d14SHong Zhang 
23261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2327b5df2d14SHong Zhang @*/
2328d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2329d71ae5a4SJacob Faibussowitsch {
2330b5df2d14SHong Zhang   PetscFunctionBegin;
23316ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
23326ba663aaSJed Brown   PetscValidType(B, 1);
23336ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2334cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
23353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2336b5df2d14SHong Zhang }
2337b5df2d14SHong Zhang 
23382920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2339a30f8f8cSSatish Balay /*@C
234011a5261eSBarry Smith   MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2341a30f8f8cSSatish Balay   (block compressed row).  For good matrix assembly performance
2342a30f8f8cSSatish Balay   the user should preallocate the matrix storage by setting the parameters
234320f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2344a30f8f8cSSatish Balay 
2345d083f849SBarry Smith   Collective
2346a30f8f8cSSatish Balay 
2347a30f8f8cSSatish Balay   Input Parameters:
2348a30f8f8cSSatish Balay + comm  - MPI communicator
234911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
235020f4b53cSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
235120f4b53cSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2352a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2353a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
235420f4b53cSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2355a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
2356a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
235720f4b53cSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
235820f4b53cSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2359a30f8f8cSSatish Balay . d_nz  - number of block nonzeros per block row in diagonal portion of local
2360a30f8f8cSSatish Balay            submatrix (same for all local rows)
2361a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23626d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
23632ef1f0ffSBarry Smith            (possibly different for each block block row) or `NULL`.
236495742e49SBarry Smith            If you plan to factor the matrix you must leave room for the diagonal entry and
236595742e49SBarry Smith            set its value even if it is zero.
2366a30f8f8cSSatish Balay . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2367a30f8f8cSSatish Balay            submatrix (same for all local rows).
2368a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2369a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
23702ef1f0ffSBarry Smith            each block row) or `NULL`.
2371a30f8f8cSSatish Balay 
2372a30f8f8cSSatish Balay   Output Parameter:
2373a30f8f8cSSatish Balay . A - the matrix
2374a30f8f8cSSatish Balay 
2375a30f8f8cSSatish Balay   Options Database Keys:
2376a2b725a8SWilliam Gropp + -mat_no_unroll  - uses code that does not unroll the loops in the
2377a30f8f8cSSatish Balay                      block calculations (much slower)
2378a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2379a2b725a8SWilliam Gropp - -mat_mpi        - use the parallel matrix data structures even on one processor
2380a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
2381a30f8f8cSSatish Balay 
23822ef1f0ffSBarry Smith   Level: intermediate
23832ef1f0ffSBarry Smith 
23842ef1f0ffSBarry Smith   Notes:
238577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2386f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
238711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2388175b88e8SBarry Smith 
2389d1be2dadSMatthew Knepley   The number of rows and columns must be divisible by blocksize.
23906d6d819aSHong Zhang   This matrix type does not support complex Hermitian operation.
2391d1be2dadSMatthew Knepley 
2392a30f8f8cSSatish Balay   The user MUST specify either the local or global matrix dimensions
2393a30f8f8cSSatish Balay   (possibly both).
2394a30f8f8cSSatish Balay 
239511a5261eSBarry Smith   If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2396a30f8f8cSSatish Balay   than it must be used on all processors that share the object for that argument.
2397a30f8f8cSSatish Balay 
239849a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
239949a6f317SBarry Smith 
2400a30f8f8cSSatish Balay   Storage Information:
2401a30f8f8cSSatish Balay   For a square global matrix we define each processor's diagonal portion
2402a30f8f8cSSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
2403a30f8f8cSSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
2404a30f8f8cSSatish Balay   local matrix (a rectangular submatrix).
2405a30f8f8cSSatish Balay 
2406a30f8f8cSSatish Balay   The user can specify preallocated storage for the diagonal part of
24072ef1f0ffSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both). Set
24082ef1f0ffSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2409a30f8f8cSSatish Balay   memory allocation. Likewise, specify preallocated storage for the
24102ef1f0ffSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2411a30f8f8cSSatish Balay 
2412a30f8f8cSSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2413a30f8f8cSSatish Balay   the figure below we depict these three local rows and all columns (0-11).
2414a30f8f8cSSatish Balay 
2415a30f8f8cSSatish Balay .vb
2416a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
2417a4b1a0f6SJed Brown           --------------------------
2418c2fc9fa9SBarry Smith    row 3  |. . . d d d o o o o  o  o
2419c2fc9fa9SBarry Smith    row 4  |. . . d d d o o o o  o  o
2420c2fc9fa9SBarry Smith    row 5  |. . . d d d o o o o  o  o
2421a4b1a0f6SJed Brown           --------------------------
2422a30f8f8cSSatish Balay .ve
2423a30f8f8cSSatish Balay 
2424a30f8f8cSSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
2425a30f8f8cSSatish Balay   submatrix, and any entries in the o locations are stored in the
24266d10fdaeSSatish Balay   o (off-diagonal) submatrix. Note that the d matrix is stored in
24272ef1f0ffSBarry Smith   `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2428a30f8f8cSSatish Balay 
24292ef1f0ffSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
24306d10fdaeSSatish Balay   plus the diagonal part of the d matrix,
24312ef1f0ffSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2432a30f8f8cSSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
24332ef1f0ffSBarry Smith   one expects `d_nz` >> `o_nz`.
2434a30f8f8cSSatish Balay 
24351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`
2436a30f8f8cSSatish Balay @*/
2437d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2438d71ae5a4SJacob Faibussowitsch {
24391302d50aSBarry Smith   PetscMPIInt size;
2440a30f8f8cSSatish Balay 
2441a30f8f8cSSatish Balay   PetscFunctionBegin;
24429566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24439566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
24449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2445273d9f13SBarry Smith   if (size > 1) {
24469566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISBAIJ));
24479566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2448273d9f13SBarry Smith   } else {
24499566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSBAIJ));
24509566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2451273d9f13SBarry Smith   }
24523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2453a30f8f8cSSatish Balay }
2454a30f8f8cSSatish Balay 
2455d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2456d71ae5a4SJacob Faibussowitsch {
2457a30f8f8cSSatish Balay   Mat           mat;
2458a30f8f8cSSatish Balay   Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2459d0f46423SBarry Smith   PetscInt      len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2460387bc808SHong Zhang   PetscScalar  *array;
2461a30f8f8cSSatish Balay 
2462a30f8f8cSSatish Balay   PetscFunctionBegin;
2463f4259b30SLisandro Dalcin   *newmat = NULL;
246426fbe8dcSKarl Rupp 
24659566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24669566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24679566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2470e1b6402fSHong Zhang 
2471d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2472273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
247382327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
24747fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24757fff6886SHong Zhang 
2476b5df2d14SHong Zhang   a      = (Mat_MPISBAIJ *)mat->data;
2477a30f8f8cSSatish Balay   a->bs2 = oldmat->bs2;
2478a30f8f8cSSatish Balay   a->mbs = oldmat->mbs;
2479a30f8f8cSSatish Balay   a->nbs = oldmat->nbs;
2480a30f8f8cSSatish Balay   a->Mbs = oldmat->Mbs;
2481a30f8f8cSSatish Balay   a->Nbs = oldmat->Nbs;
2482a30f8f8cSSatish Balay 
2483a30f8f8cSSatish Balay   a->size         = oldmat->size;
2484a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2485a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2486a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2487f4259b30SLisandro Dalcin   a->rowindices   = NULL;
2488f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
2489a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2490f4259b30SLisandro Dalcin   a->barray       = NULL;
2491899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2492899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2493899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2494899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
2495a30f8f8cSSatish Balay 
2496a30f8f8cSSatish Balay   /* hash table stuff */
2497f4259b30SLisandro Dalcin   a->ht           = NULL;
2498f4259b30SLisandro Dalcin   a->hd           = NULL;
2499a30f8f8cSSatish Balay   a->ht_size      = 0;
2500a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2501a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2502a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2503a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2504a30f8f8cSSatish Balay 
25059566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2506a30f8f8cSSatish Balay   if (oldmat->colmap) {
2507a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2508eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2509a30f8f8cSSatish Balay #else
25109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
25119566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2512a30f8f8cSSatish Balay #endif
2513f4259b30SLisandro Dalcin   } else a->colmap = NULL;
2514387bc808SHong Zhang 
2515a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
25169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
25179566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2518f4259b30SLisandro Dalcin   } else a->garray = NULL;
2519a30f8f8cSSatish Balay 
25209566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
25219566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
25229566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
252382327fa8SHong Zhang 
25249566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
25259566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2526387bc808SHong Zhang 
25279566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(a->slvec1, &nt));
25289566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec1, &array));
25299566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
25309566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
25319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec1, &array));
25329566063dSJacob Faibussowitsch   PetscCall(VecGetArray(a->slvec0, &array));
25339566063dSJacob Faibussowitsch   PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
25349566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(a->slvec0, &array));
2535387bc808SHong Zhang 
2536387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
25379566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2538387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
253982327fa8SHong Zhang 
25409566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
25419566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
25429566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2543a30f8f8cSSatish Balay   *newmat = mat;
25443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2545a30f8f8cSSatish Balay }
2546a30f8f8cSSatish Balay 
2547618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2548618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2549618cc2edSLisandro Dalcin 
2550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2551d71ae5a4SJacob Faibussowitsch {
25527f489da9SVaclav Hapla   PetscBool isbinary;
255395936485SShri Abhyankar 
255495936485SShri Abhyankar   PetscFunctionBegin;
25559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25565f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25579566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
255995936485SShri Abhyankar }
256095936485SShri Abhyankar 
2561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2562d71ae5a4SJacob Faibussowitsch {
256324d5174aSHong Zhang   Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2564f4c0e9e4SHong Zhang   Mat_SeqBAIJ  *b = (Mat_SeqBAIJ *)(a->B)->data;
2565ca54ac64SHong Zhang   PetscReal     atmp;
256687828ca2SBarry Smith   PetscReal    *work, *svalues, *rvalues;
25671302d50aSBarry Smith   PetscInt      i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25681302d50aSBarry Smith   PetscMPIInt   rank, size;
25691302d50aSBarry Smith   PetscInt     *rowners_bs, dest, count, source;
257087828ca2SBarry Smith   PetscScalar  *va;
25718a1c53f2SBarry Smith   MatScalar    *ba;
2572f4c0e9e4SHong Zhang   MPI_Status    stat;
257324d5174aSHong Zhang 
257424d5174aSHong Zhang   PetscFunctionBegin;
25755f80ce2aSJacob Faibussowitsch   PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25769566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &va));
2578f4c0e9e4SHong Zhang 
25799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2581f4c0e9e4SHong Zhang 
2582d0f46423SBarry Smith   bs  = A->rmap->bs;
2583f4c0e9e4SHong Zhang   mbs = a->mbs;
2584f4c0e9e4SHong Zhang   Mbs = a->Mbs;
2585f4c0e9e4SHong Zhang   ba  = b->a;
2586f4c0e9e4SHong Zhang   bi  = b->i;
2587f4c0e9e4SHong Zhang   bj  = b->j;
2588f4c0e9e4SHong Zhang 
2589f4c0e9e4SHong Zhang   /* find ownerships */
2590d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2591f4c0e9e4SHong Zhang 
2592f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
25939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bs * Mbs, &work));
2594f4c0e9e4SHong Zhang 
2595f4c0e9e4SHong Zhang   /* row_max for B */
2596b8475685SHong Zhang   if (rank != size - 1) {
2597f4c0e9e4SHong Zhang     for (i = 0; i < mbs; i++) {
25989371c9d4SSatish Balay       ncols = bi[1] - bi[0];
25999371c9d4SSatish Balay       bi++;
2600f4c0e9e4SHong Zhang       brow = bs * i;
2601f4c0e9e4SHong Zhang       for (j = 0; j < ncols; j++) {
2602f4c0e9e4SHong Zhang         bcol = bs * (*bj);
2603f4c0e9e4SHong Zhang         for (kcol = 0; kcol < bs; kcol++) {
2604ca54ac64SHong Zhang           col = bcol + kcol;           /* local col index */
260504d41228SHong Zhang           col += rowners_bs[rank + 1]; /* global col index */
2606f4c0e9e4SHong Zhang           for (krow = 0; krow < bs; krow++) {
26079371c9d4SSatish Balay             atmp = PetscAbsScalar(*ba);
26089371c9d4SSatish Balay             ba++;
2609ca54ac64SHong Zhang             row = brow + krow; /* local row index */
2610ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2611f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2612f4c0e9e4SHong Zhang           }
2613f4c0e9e4SHong Zhang         }
2614f4c0e9e4SHong Zhang         bj++;
2615f4c0e9e4SHong Zhang       }
2616f4c0e9e4SHong Zhang     }
2617f4c0e9e4SHong Zhang 
2618f4c0e9e4SHong Zhang     /* send values to its owners */
2619f4c0e9e4SHong Zhang     for (dest = rank + 1; dest < size; dest++) {
2620f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2621ca54ac64SHong Zhang       count   = rowners_bs[dest + 1] - rowners_bs[dest];
26229566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2623ca54ac64SHong Zhang     }
2624f4c0e9e4SHong Zhang   }
2625f4c0e9e4SHong Zhang 
2626f4c0e9e4SHong Zhang   /* receive values */
2627ca54ac64SHong Zhang   if (rank) {
2628f4c0e9e4SHong Zhang     rvalues = work;
2629ca54ac64SHong Zhang     count   = rowners_bs[rank + 1] - rowners_bs[rank];
2630f4c0e9e4SHong Zhang     for (source = 0; source < rank; source++) {
26319566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2632f4c0e9e4SHong Zhang       /* process values */
2633f4c0e9e4SHong Zhang       for (i = 0; i < count; i++) {
2634ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2635f4c0e9e4SHong Zhang       }
2636f4c0e9e4SHong Zhang     }
2637ca54ac64SHong Zhang   }
2638f4c0e9e4SHong Zhang 
26399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &va));
26409566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
26413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
264224d5174aSHong Zhang }
26432798e883SHong Zhang 
2644d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2645d71ae5a4SJacob Faibussowitsch {
26462798e883SHong Zhang   Mat_MPISBAIJ      *mat = (Mat_MPISBAIJ *)matin->data;
2647d0f46423SBarry Smith   PetscInt           mbs = mat->mbs, bs = matin->rmap->bs;
26483649974fSBarry Smith   PetscScalar       *x, *ptr, *from;
2649ffe4fb16SHong Zhang   Vec                bb1;
26503649974fSBarry Smith   const PetscScalar *b;
2651ffe4fb16SHong Zhang 
2652ffe4fb16SHong Zhang   PetscFunctionBegin;
26535f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26545f80ce2aSJacob Faibussowitsch   PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2655ffe4fb16SHong Zhang 
2656a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
26579566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26583ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2659a2b30743SBarry Smith   }
2660a2b30743SBarry Smith 
2661ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2662ffe4fb16SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
26639566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2664ffe4fb16SHong Zhang       its--;
2665ffe4fb16SHong Zhang     }
2666ffe4fb16SHong Zhang 
26679566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &bb1));
2668ffe4fb16SHong Zhang     while (its--) {
2669ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
26709566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2671ffe4fb16SHong Zhang 
2672ffe4fb16SHong Zhang       /* copy xx into slvec0a */
26739566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec0, &ptr));
26749566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
26759566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26769566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2677ffe4fb16SHong Zhang 
26789566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->slvec0, -1.0));
2679ffe4fb16SHong Zhang 
2680ffe4fb16SHong Zhang       /* copy bb into slvec1a */
26819566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1, &ptr));
26829566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
26839566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26849566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2685ffe4fb16SHong Zhang 
2686ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2687629a200eSBarry Smith       PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2688629a200eSBarry Smith       PetscCall(VecZeroEntries(mat->slvec1b));
2689ffe4fb16SHong Zhang 
26909566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26919566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
26929566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
26939566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2694ffe4fb16SHong Zhang 
2695ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
26969566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2697ffe4fb16SHong Zhang 
2698ffe4fb16SHong Zhang       /* local diagonal sweep */
26999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2700ffe4fb16SHong Zhang     }
27019566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&bb1));
2702fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
27039566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2704fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
27059566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2706fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2707fa22f6d0SBarry Smith     Vec                xx1;
2708ace3abfcSBarry Smith     PetscBool          hasop;
270920f1ed55SBarry Smith     const PetscScalar *diag;
2710887ee2caSBarry Smith     PetscScalar       *sl, scale = (omega - 2.0) / omega;
271120f1ed55SBarry Smith     PetscInt           i, n;
2712fa22f6d0SBarry Smith 
2713fa22f6d0SBarry Smith     if (!mat->xx1) {
27149566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->xx1));
27159566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(bb, &mat->bb1));
2716fa22f6d0SBarry Smith     }
2717fa22f6d0SBarry Smith     xx1 = mat->xx1;
2718fa22f6d0SBarry Smith     bb1 = mat->bb1;
2719fa22f6d0SBarry Smith 
27209566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2721fa22f6d0SBarry Smith 
2722fa22f6d0SBarry Smith     if (!mat->diag) {
2723effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
27249566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
27259566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
2726fa22f6d0SBarry Smith     }
27279566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2728fa22f6d0SBarry Smith 
2729fa22f6d0SBarry Smith     if (hasop) {
27309566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
27319566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a, scale, bb));
273220f1ed55SBarry Smith     } else {
273320f1ed55SBarry Smith       /*
273420f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
27359566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
27369566063dSJacob Faibussowitsch       PetscCall(VecAYPX(mat->slvec1a,scale,bb));
273720f1ed55SBarry Smith       */
27389566063dSJacob Faibussowitsch       PetscCall(VecGetArray(mat->slvec1a, &sl));
27399566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(mat->diag, &diag));
27409566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(bb, &b));
27419566063dSJacob Faibussowitsch       PetscCall(VecGetArray(xx, &x));
27429566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(xx, &n));
2743887ee2caSBarry Smith       if (omega == 1.0) {
274426fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
27459566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * n));
2746887ee2caSBarry Smith       } else {
274726fbe8dcSKarl Rupp         for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
27489566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(3.0 * n));
2749887ee2caSBarry Smith       }
27509566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(mat->slvec1a, &sl));
27519566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(mat->diag, &diag));
27529566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(bb, &b));
27539566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(xx, &x));
275420f1ed55SBarry Smith     }
2755fa22f6d0SBarry Smith 
2756fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2757629a200eSBarry Smith     PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2758629a200eSBarry Smith     PetscCall(VecZeroEntries(mat->slvec1b));
27599566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27609566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->slvec0, &from));
27619566063dSJacob Faibussowitsch     PetscCall(VecGetArray(xx, &x));
27629566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(from, x, bs * mbs));
27639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->slvec0, &from));
27649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(xx, &x));
27659566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27669566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27679566063dSJacob Faibussowitsch     PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2768fa22f6d0SBarry Smith 
2769fa22f6d0SBarry Smith     /* local sweep */
27709566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27719566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
2772f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2774ffe4fb16SHong Zhang }
2775ffe4fb16SHong Zhang 
2776dfb205c3SBarry Smith /*@
277711a5261eSBarry Smith   MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard
2778dfb205c3SBarry Smith   CSR format the local rows.
2779dfb205c3SBarry Smith 
2780d083f849SBarry Smith   Collective
2781dfb205c3SBarry Smith 
2782dfb205c3SBarry Smith   Input Parameters:
2783dfb205c3SBarry Smith + comm - MPI communicator
2784dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
278511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
2786dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
278711a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
27882ef1f0ffSBarry Smith        calculated if `N` is given) For square matrices `n` is almost always `m`.
27892ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27902ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2791483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2792dfb205c3SBarry Smith . j    - column indices
2793dfb205c3SBarry Smith - a    - matrix values
2794dfb205c3SBarry Smith 
2795dfb205c3SBarry Smith   Output Parameter:
2796dfb205c3SBarry Smith . mat - the matrix
2797dfb205c3SBarry Smith 
2798dfb205c3SBarry Smith   Level: intermediate
2799dfb205c3SBarry Smith 
2800dfb205c3SBarry Smith   Notes:
28012ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
28022ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `a` after you have
28032ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2804dfb205c3SBarry Smith 
28052ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2806dfb205c3SBarry Smith 
28071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
28087d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
2809dfb205c3SBarry Smith @*/
2810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2811d71ae5a4SJacob Faibussowitsch {
2812dfb205c3SBarry Smith   PetscFunctionBegin;
28135f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
28145f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
28159566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
28169566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
28179566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPISBAIJ));
28189566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
28193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2820dfb205c3SBarry Smith }
2821dfb205c3SBarry Smith 
2822dfb205c3SBarry Smith /*@C
282311a5261eSBarry Smith   MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2824dfb205c3SBarry Smith 
2825d083f849SBarry Smith   Collective
2826dfb205c3SBarry Smith 
2827dfb205c3SBarry Smith   Input Parameters:
28281c4f3114SJed Brown + B  - the matrix
2829dfb205c3SBarry Smith . bs - the block size
28302ef1f0ffSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2831dfb205c3SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2832dfb205c3SBarry Smith - v  - optional values in the matrix
2833dfb205c3SBarry Smith 
2834664954b6SBarry Smith   Level: advanced
2835664954b6SBarry Smith 
2836664954b6SBarry Smith   Notes:
28370cd7f59aSBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
28380cd7f59aSBarry Smith   and usually the numerical values as well
28390cd7f59aSBarry Smith 
284050c5228eSBarry Smith   Any entries below the diagonal are ignored
2841dfb205c3SBarry Smith 
28427d2c085eSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`
2843dfb205c3SBarry Smith @*/
2844d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2845d71ae5a4SJacob Faibussowitsch {
2846dfb205c3SBarry Smith   PetscFunctionBegin;
2847cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
28483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2849dfb205c3SBarry Smith }
2850dfb205c3SBarry Smith 
2851d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2852d71ae5a4SJacob Faibussowitsch {
285310c56fdeSHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
285410c56fdeSHong Zhang   PetscInt    *indx;
285510c56fdeSHong Zhang   PetscScalar *values;
2856dfb205c3SBarry Smith 
28574dcd73b1SHong Zhang   PetscFunctionBegin;
28589566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
285910c56fdeSHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
286010c56fdeSHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2861de25e9cbSPierre Jolivet     PetscInt     *dnz, *onz, mbs, Nbs, nbs;
286210c56fdeSHong Zhang     PetscInt     *bindx, rmax = a->rmax, j;
2863de25e9cbSPierre Jolivet     PetscMPIInt   rank, size;
28644dcd73b1SHong Zhang 
28659566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28669371c9d4SSatish Balay     mbs = m / bs;
28679371c9d4SSatish Balay     Nbs = N / cbs;
286848a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2869da91a574SPierre Jolivet     nbs = n / cbs;
28704dcd73b1SHong Zhang 
28719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
2872d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2873de25e9cbSPierre Jolivet 
28749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
28759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
2876de25e9cbSPierre Jolivet     if (rank == size - 1) {
2877de25e9cbSPierre Jolivet       /* Check sum(nbs) = Nbs */
28785f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2879de25e9cbSPierre Jolivet     }
2880de25e9cbSPierre Jolivet 
2881d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
288310c56fdeSHong Zhang     for (i = 0; i < mbs; i++) {
28849566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28854dcd73b1SHong Zhang       nnz = nnz / bs;
28864dcd73b1SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28879566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28889566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28894dcd73b1SHong Zhang     }
28909566063dSJacob Faibussowitsch     PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28919566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
28924dcd73b1SHong Zhang 
28939566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
28949566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28959566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28969566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATSBAIJ));
28979566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28989566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2899d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
29004dcd73b1SHong Zhang   }
29014dcd73b1SHong Zhang 
290210c56fdeSHong Zhang   /* numeric phase */
29039566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
29049566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
29054dcd73b1SHong Zhang 
29069566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
29074dcd73b1SHong Zhang   for (i = 0; i < m; i++) {
29089566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29094dcd73b1SHong Zhang     Ii = i + rstart;
29109566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
29119566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
29124dcd73b1SHong Zhang   }
29139566063dSJacob Faibussowitsch   PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
29149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
29159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
29163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29174dcd73b1SHong Zhang }
2918