xref: /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c (revision fef13f97fc8065f3070ca9972f2f2fb67800151f)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2a30f8f8cSSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"    /*I "petscmat.h" I*/
427691634SBarry Smith #include "../src/mat/impls/sbaij/mpi/mpisbaij.h"
57c4f633dSBarry Smith #include "../src/mat/impls/sbaij/seq/sbaij.h"
6f3da1532SBarry Smith #include "petscblaslapack.h"
7a30f8f8cSSatish Balay 
8dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ(Mat);
9dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPISBAIJ_2comm(Mat);
10dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPISBAIJ(Mat);
111302d50aSBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPISBAIJ(Mat,PetscInt,IS[],PetscInt);
121302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
131302d50aSBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar []);
141302d50aSBarry Smith EXTERN PetscErrorCode MatSetValues_SeqSBAIJ(Mat,PetscInt,const PetscInt [],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
151302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
161302d50aSBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
171302d50aSBarry Smith EXTERN PetscErrorCode MatGetRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
181302d50aSBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**);
19dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqSBAIJ(Mat,IS,PetscScalar*);
20dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar *);
21985db425SBarry Smith EXTERN PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat,Vec,PetscInt[]);
2241f059aeSBarry Smith EXTERN PetscErrorCode MatSOR_MPISBAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
23a30f8f8cSSatish Balay 
24a30f8f8cSSatish Balay EXTERN_C_BEGIN
254a2ae208SSatish Balay #undef __FUNCT__
264a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPISBAIJ"
27be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPISBAIJ(Mat mat)
28a30f8f8cSSatish Balay {
29f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
30dfbe8321SBarry Smith   PetscErrorCode ierr;
31a30f8f8cSSatish Balay 
32a30f8f8cSSatish Balay   PetscFunctionBegin;
33a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
34a30f8f8cSSatish Balay   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
35a30f8f8cSSatish Balay   PetscFunctionReturn(0);
36a30f8f8cSSatish Balay }
37a30f8f8cSSatish Balay EXTERN_C_END
38a30f8f8cSSatish Balay 
39a30f8f8cSSatish Balay EXTERN_C_BEGIN
404a2ae208SSatish Balay #undef __FUNCT__
414a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPISBAIJ"
42be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPISBAIJ(Mat mat)
43a30f8f8cSSatish Balay {
44f3566a2aSHong Zhang   Mat_MPISBAIJ   *aij = (Mat_MPISBAIJ *)mat->data;
45dfbe8321SBarry Smith   PetscErrorCode ierr;
46a30f8f8cSSatish Balay 
47a30f8f8cSSatish Balay   PetscFunctionBegin;
48a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
49a30f8f8cSSatish Balay   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
50a30f8f8cSSatish Balay   PetscFunctionReturn(0);
51a30f8f8cSSatish Balay }
52a30f8f8cSSatish Balay EXTERN_C_END
53a30f8f8cSSatish Balay 
54a30f8f8cSSatish Balay 
55a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \
56a30f8f8cSSatish Balay { \
57a30f8f8cSSatish Balay  \
58a30f8f8cSSatish Balay     brow = row/bs;  \
59a30f8f8cSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
60a30f8f8cSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
61a30f8f8cSSatish Balay       bcol = col/bs; \
62a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
63a30f8f8cSSatish Balay       low = 0; high = nrow; \
64a30f8f8cSSatish Balay       while (high-low > 3) { \
65a30f8f8cSSatish Balay         t = (low+high)/2; \
66a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
67a30f8f8cSSatish Balay         else              low  = t; \
68a30f8f8cSSatish Balay       } \
69a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
70a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
71a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
72a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
73a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
74a30f8f8cSSatish Balay           else                    *bap  = value;  \
75a30f8f8cSSatish Balay           goto a_noinsert; \
76a30f8f8cSSatish Balay         } \
77a30f8f8cSSatish Balay       } \
78a30f8f8cSSatish Balay       if (a->nonew == 1) goto a_noinsert; \
79e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
80*fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
81a30f8f8cSSatish Balay       N = nrow++ - 1;  \
82a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
83a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
84a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
85a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
86a30f8f8cSSatish Balay       } \
87a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
88a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
89a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
90a30f8f8cSSatish Balay       a_noinsert:; \
91a30f8f8cSSatish Balay     ailen[brow] = nrow; \
92a30f8f8cSSatish Balay }
93e5e170daSBarry Smith 
94a30f8f8cSSatish Balay #define  MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \
95a30f8f8cSSatish Balay { \
96a30f8f8cSSatish Balay     brow = row/bs;  \
97a30f8f8cSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
98a30f8f8cSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
99a30f8f8cSSatish Balay       bcol = col/bs; \
100a30f8f8cSSatish Balay       ridx = row % bs; cidx = col % bs; \
101a30f8f8cSSatish Balay       low = 0; high = nrow; \
102a30f8f8cSSatish Balay       while (high-low > 3) { \
103a30f8f8cSSatish Balay         t = (low+high)/2; \
104a30f8f8cSSatish Balay         if (rp[t] > bcol) high = t; \
105a30f8f8cSSatish Balay         else              low  = t; \
106a30f8f8cSSatish Balay       } \
107a30f8f8cSSatish Balay       for (_i=low; _i<high; _i++) { \
108a30f8f8cSSatish Balay         if (rp[_i] > bcol) break; \
109a30f8f8cSSatish Balay         if (rp[_i] == bcol) { \
110a30f8f8cSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
111a30f8f8cSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
112a30f8f8cSSatish Balay           else                    *bap  = value;  \
113a30f8f8cSSatish Balay           goto b_noinsert; \
114a30f8f8cSSatish Balay         } \
115a30f8f8cSSatish Balay       } \
116a30f8f8cSSatish Balay       if (b->nonew == 1) goto b_noinsert; \
117e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
118*fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
119a30f8f8cSSatish Balay       N = nrow++ - 1;  \
120a30f8f8cSSatish Balay       /* shift up all the later entries in this row */ \
121a30f8f8cSSatish Balay       for (ii=N; ii>=_i; ii--) { \
122a30f8f8cSSatish Balay         rp[ii+1] = rp[ii]; \
123a30f8f8cSSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
124a30f8f8cSSatish Balay       } \
125a30f8f8cSSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
126a30f8f8cSSatish Balay       rp[_i]                      = bcol;  \
127a30f8f8cSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
128a30f8f8cSSatish Balay       b_noinsert:; \
129a30f8f8cSSatish Balay     bilen[brow] = nrow; \
130a30f8f8cSSatish Balay }
131a30f8f8cSSatish Balay 
132a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
133a30f8f8cSSatish Balay    Any a(i,j) with i>j input by user is ingored.
134a30f8f8cSSatish Balay */
1354a2ae208SSatish Balay #undef __FUNCT__
136dd6ea824SBarry Smith #define __FUNCT__ "MatSetValues_MPISBAIJ"
137dd6ea824SBarry Smith PetscErrorCode MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
138a30f8f8cSSatish Balay {
139a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
140a30f8f8cSSatish Balay   MatScalar      value;
141b5df2d14SHong Zhang   PetscTruth     roworiented = baij->roworiented;
142dfbe8321SBarry Smith   PetscErrorCode ierr;
1431302d50aSBarry Smith   PetscInt       i,j,row,col;
144d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
145d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
146d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
147a30f8f8cSSatish Balay 
148a30f8f8cSSatish Balay   /* Some Variables required in the macro */
149a30f8f8cSSatish Balay   Mat            A = baij->A;
150a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)(A)->data;
1511302d50aSBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
152a30f8f8cSSatish Balay   MatScalar      *aa=a->a;
153a30f8f8cSSatish Balay 
154a30f8f8cSSatish Balay   Mat            B = baij->B;
155a30f8f8cSSatish Balay   Mat_SeqBAIJ   *b = (Mat_SeqBAIJ*)(B)->data;
1561302d50aSBarry Smith   PetscInt      *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
157a30f8f8cSSatish Balay   MatScalar     *ba=b->a;
158a30f8f8cSSatish Balay 
1591302d50aSBarry Smith   PetscInt      *rp,ii,nrow,_i,rmax,N,brow,bcol;
1601302d50aSBarry Smith   PetscInt      low,high,t,ridx,cidx,bs2=a->bs2;
161a30f8f8cSSatish Balay   MatScalar     *ap,*bap;
162a30f8f8cSSatish Balay 
163a30f8f8cSSatish Balay   /* for stash */
164910ba992SMatthew Knepley   PetscInt      n_loc, *in_loc = PETSC_NULL;
165910ba992SMatthew Knepley   MatScalar     *v_loc = PETSC_NULL;
166a30f8f8cSSatish Balay 
167a30f8f8cSSatish Balay   PetscFunctionBegin;
16871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
169a30f8f8cSSatish Balay   if (!baij->donotstash){
17059ffdab8SBarry Smith     if (n > baij->n_loc) {
17159ffdab8SBarry Smith       ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
17259ffdab8SBarry Smith       ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
17359ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&baij->in_loc);CHKERRQ(ierr);
17459ffdab8SBarry Smith       ierr = PetscMalloc(n*sizeof(MatScalar),&baij->v_loc);CHKERRQ(ierr);
17559ffdab8SBarry Smith       baij->n_loc = n;
17659ffdab8SBarry Smith     }
17759ffdab8SBarry Smith     in_loc = baij->in_loc;
17859ffdab8SBarry Smith     v_loc  = baij->v_loc;
179a30f8f8cSSatish Balay   }
180a30f8f8cSSatish Balay 
181a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
182a30f8f8cSSatish Balay     if (im[i] < 0) continue;
1832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
184e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
185a30f8f8cSSatish Balay #endif
186a30f8f8cSSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
187a30f8f8cSSatish Balay       row = im[i] - rstart_orig;              /* local row index */
188a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
18901b2bd88SHong Zhang         if (im[i]/bs > in[j]/bs){
19001b2bd88SHong Zhang           if (a->ignore_ltriangular){
19101b2bd88SHong Zhang             continue;    /* ignore lower triangular blocks */
19201b2bd88SHong Zhang           } else {
193e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
19401b2bd88SHong Zhang           }
19501b2bd88SHong Zhang         }
196a30f8f8cSSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){  /* diag entry (A) */
197a30f8f8cSSatish Balay           col = in[j] - cstart_orig;          /* local col index */
198a30f8f8cSSatish Balay           brow = row/bs; bcol = col/bs;
199a30f8f8cSSatish Balay           if (brow > bcol) continue;  /* ignore lower triangular blocks of A */
200a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
201a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv);
202a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
203a30f8f8cSSatish Balay         } else if (in[j] < 0) continue;
2042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
205cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
206a30f8f8cSSatish Balay #endif
207a30f8f8cSSatish Balay         else {  /* off-diag entry (B) */
208a30f8f8cSSatish Balay           if (mat->was_assembled) {
209a30f8f8cSSatish Balay             if (!baij->colmap) {
210653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
211a30f8f8cSSatish Balay             }
212a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
213a30f8f8cSSatish Balay             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
21471730473SSatish Balay             col  = col - 1;
215a30f8f8cSSatish Balay #else
21671730473SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
217a30f8f8cSSatish Balay #endif
218a30f8f8cSSatish Balay             if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) {
219a30f8f8cSSatish Balay               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
220a30f8f8cSSatish Balay               col =  in[j];
221a30f8f8cSSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
222a30f8f8cSSatish Balay               B = baij->B;
223a30f8f8cSSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
224a30f8f8cSSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
225a30f8f8cSSatish Balay               ba=b->a;
22671730473SSatish Balay             } else col += in[j]%bs;
227a30f8f8cSSatish Balay           } else col = in[j];
228a30f8f8cSSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229a30f8f8cSSatish Balay           MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv);
230a30f8f8cSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
231a30f8f8cSSatish Balay         }
232a30f8f8cSSatish Balay       }
233a30f8f8cSSatish Balay     } else {  /* off processor entry */
234a30f8f8cSSatish Balay       if (!baij->donotstash) {
235a30f8f8cSSatish Balay         n_loc = 0;
236a30f8f8cSSatish Balay         for (j=0; j<n; j++){
237f65c83cfSHong Zhang           if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */
238a30f8f8cSSatish Balay           in_loc[n_loc] = in[j];
239a30f8f8cSSatish Balay           if (roworiented) {
240a30f8f8cSSatish Balay             v_loc[n_loc] = v[i*n+j];
241a30f8f8cSSatish Balay           } else {
242a30f8f8cSSatish Balay             v_loc[n_loc] = v[j*m+i];
243a30f8f8cSSatish Balay           }
244a30f8f8cSSatish Balay           n_loc++;
245a30f8f8cSSatish Balay         }
246b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc,PETSC_FALSE);CHKERRQ(ierr);
247a30f8f8cSSatish Balay       }
248a30f8f8cSSatish Balay     }
249a30f8f8cSSatish Balay   }
250a30f8f8cSSatish Balay   PetscFunctionReturn(0);
251a30f8f8cSSatish Balay }
252a30f8f8cSSatish Balay 
2534a2ae208SSatish Balay #undef __FUNCT__
254dd6ea824SBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPISBAIJ"
255dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
256a30f8f8cSSatish Balay {
2570880e062SHong Zhang   Mat_MPISBAIJ    *baij = (Mat_MPISBAIJ*)mat->data;
258f15d580aSBarry Smith   const MatScalar *value;
259f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
260f3f98c53SJed Brown   PetscTruth      roworiented = baij->roworiented,ignore_ltriangular = ((Mat_SeqSBAIJ*)baij->A->data)->ignore_ltriangular;
261dfbe8321SBarry Smith   PetscErrorCode  ierr;
262899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
263899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->rstartbs,stepval;
264d0f46423SBarry Smith   PetscInt        cend=baij->rendbs,bs=mat->rmap->bs,bs2=baij->bs2;
2650880e062SHong Zhang 
266a30f8f8cSSatish Balay   PetscFunctionBegin;
2670880e062SHong Zhang   if(!barray) {
2680880e062SHong Zhang     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
2690880e062SHong Zhang     baij->barray = barray;
2700880e062SHong Zhang   }
2710880e062SHong Zhang 
2720880e062SHong Zhang   if (roworiented) {
2730880e062SHong Zhang     stepval = (n-1)*bs;
2740880e062SHong Zhang   } else {
2750880e062SHong Zhang     stepval = (m-1)*bs;
2760880e062SHong Zhang   }
2770880e062SHong Zhang   for (i=0; i<m; i++) {
2780880e062SHong Zhang     if (im[i] < 0) continue;
2792515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
280e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
2810880e062SHong Zhang #endif
2820880e062SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
2830880e062SHong Zhang       row = im[i] - rstart;
2840880e062SHong Zhang       for (j=0; j<n; j++) {
285f3f98c53SJed Brown         if (im[i] > in[j]) {
286f3f98c53SJed Brown           if (ignore_ltriangular) continue; /* ignore lower triangular blocks */
287e32f2f54SBarry Smith           else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
288f3f98c53SJed Brown         }
2890880e062SHong Zhang         /* If NumCol = 1 then a copy is not required */
2900880e062SHong Zhang         if ((roworiented) && (n == 1)) {
291f15d580aSBarry Smith           barray = (MatScalar*) v + i*bs2;
2920880e062SHong Zhang         } else if((!roworiented) && (m == 1)) {
293f15d580aSBarry Smith           barray = (MatScalar*) v + j*bs2;
2940880e062SHong Zhang         } else { /* Here a copy is required */
2950880e062SHong Zhang           if (roworiented) {
2960880e062SHong Zhang             value = v + i*(stepval+bs)*bs + j*bs;
2970880e062SHong Zhang           } else {
2980880e062SHong Zhang             value = v + j*(stepval+bs)*bs + i*bs;
2990880e062SHong Zhang           }
3000880e062SHong Zhang           for (ii=0; ii<bs; ii++,value+=stepval) {
3010880e062SHong Zhang             for (jj=0; jj<bs; jj++) {
3020880e062SHong Zhang               *barray++  = *value++;
3030880e062SHong Zhang             }
3040880e062SHong Zhang           }
3050880e062SHong Zhang           barray -=bs2;
3060880e062SHong Zhang         }
3070880e062SHong Zhang 
3080880e062SHong Zhang         if (in[j] >= cstart && in[j] < cend){
3090880e062SHong Zhang           col  = in[j] - cstart;
3100880e062SHong Zhang           ierr = MatSetValuesBlocked_SeqSBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3110880e062SHong Zhang         }
3120880e062SHong Zhang         else if (in[j] < 0) continue;
3132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
314cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
3150880e062SHong Zhang #endif
3160880e062SHong Zhang         else {
3170880e062SHong Zhang           if (mat->was_assembled) {
3180880e062SHong Zhang             if (!baij->colmap) {
319653e4784SBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
3200880e062SHong Zhang             }
3210880e062SHong Zhang 
3222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3230880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3241302d50aSBarry Smith             { PetscInt data;
3250880e062SHong Zhang               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
326e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3270880e062SHong Zhang             }
3280880e062SHong Zhang #else
329e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
3300880e062SHong Zhang #endif
3310880e062SHong Zhang #endif
3320880e062SHong Zhang #if defined (PETSC_USE_CTABLE)
3330880e062SHong Zhang 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
3340880e062SHong Zhang             col  = (col - 1)/bs;
3350880e062SHong Zhang #else
3360880e062SHong Zhang             col = (baij->colmap[in[j]] - 1)/bs;
3370880e062SHong Zhang #endif
3380880e062SHong Zhang             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3390880e062SHong Zhang               ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
3400880e062SHong Zhang               col =  in[j];
3410880e062SHong Zhang             }
3420880e062SHong Zhang           }
3430880e062SHong Zhang           else col = in[j];
344e249d750SSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
3450880e062SHong Zhang         }
3460880e062SHong Zhang       }
3470880e062SHong Zhang     } else {
3480880e062SHong Zhang       if (!baij->donotstash) {
3490880e062SHong Zhang         if (roworiented) {
3500880e062SHong Zhang           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3510880e062SHong Zhang         } else {
3520880e062SHong Zhang           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
3530880e062SHong Zhang         }
3540880e062SHong Zhang       }
3550880e062SHong Zhang     }
3560880e062SHong Zhang   }
3570880e062SHong Zhang   PetscFunctionReturn(0);
358a30f8f8cSSatish Balay }
359a30f8f8cSSatish Balay 
3604a2ae208SSatish Balay #undef __FUNCT__
3614a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPISBAIJ"
3621302d50aSBarry Smith PetscErrorCode MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
363a30f8f8cSSatish Balay {
364f3566a2aSHong Zhang   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
3656849ba73SBarry Smith   PetscErrorCode ierr;
366d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
367d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
368a30f8f8cSSatish Balay 
369a30f8f8cSSatish Balay   PetscFunctionBegin;
370a30f8f8cSSatish Balay   for (i=0; i<m; i++) {
371e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); */
372e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
373a30f8f8cSSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
374a30f8f8cSSatish Balay       row = idxm[i] - bsrstart;
375a30f8f8cSSatish Balay       for (j=0; j<n; j++) {
376e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column %D",idxn[j]); */
377e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
378a30f8f8cSSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
379a30f8f8cSSatish Balay           col = idxn[j] - bscstart;
380c8407628SSatish Balay           ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
381a30f8f8cSSatish Balay         } else {
382a30f8f8cSSatish Balay           if (!baij->colmap) {
383653e4784SBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
384a30f8f8cSSatish Balay           }
385a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
386a30f8f8cSSatish Balay           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
387a30f8f8cSSatish Balay           data --;
388a30f8f8cSSatish Balay #else
389a30f8f8cSSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
390a30f8f8cSSatish Balay #endif
391a30f8f8cSSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
392a30f8f8cSSatish Balay           else {
393a30f8f8cSSatish Balay             col  = data + idxn[j]%bs;
394e249d750SSatish Balay             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
395a30f8f8cSSatish Balay           }
396a30f8f8cSSatish Balay         }
397a30f8f8cSSatish Balay       }
398a30f8f8cSSatish Balay     } else {
399e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
400a30f8f8cSSatish Balay     }
401a30f8f8cSSatish Balay   }
402a30f8f8cSSatish Balay  PetscFunctionReturn(0);
403a30f8f8cSSatish Balay }
404a30f8f8cSSatish Balay 
4054a2ae208SSatish Balay #undef __FUNCT__
4064a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPISBAIJ"
407dfbe8321SBarry Smith PetscErrorCode MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm)
408a30f8f8cSSatish Balay {
409a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
410dfbe8321SBarry Smith   PetscErrorCode ierr;
411a30f8f8cSSatish Balay   PetscReal      sum[2],*lnorm2;
412a30f8f8cSSatish Balay 
413a30f8f8cSSatish Balay   PetscFunctionBegin;
414a30f8f8cSSatish Balay   if (baij->size == 1) {
415a30f8f8cSSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
416a30f8f8cSSatish Balay   } else {
417a30f8f8cSSatish Balay     if (type == NORM_FROBENIUS) {
418f6275e2eSBarry Smith       ierr = PetscMalloc(2*sizeof(PetscReal),&lnorm2);CHKERRQ(ierr);
419a30f8f8cSSatish Balay       ierr =  MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr);
420a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++;            /* squar power of norm(A) */
421a30f8f8cSSatish Balay       ierr =  MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr);
422a30f8f8cSSatish Balay       *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--;             /* squar power of norm(B) */
4237adad957SLisandro Dalcin       ierr = MPI_Allreduce(lnorm2,&sum,2,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
424a30f8f8cSSatish Balay       *norm = sqrt(sum[0] + 2*sum[1]);
425a30f8f8cSSatish Balay       ierr = PetscFree(lnorm2);CHKERRQ(ierr);
4260b8dc8d2SHong Zhang     } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
4270b8dc8d2SHong Zhang       Mat_SeqSBAIJ *amat=(Mat_SeqSBAIJ*)baij->A->data;
4280b8dc8d2SHong Zhang       Mat_SeqBAIJ  *bmat=(Mat_SeqBAIJ*)baij->B->data;
4290b8dc8d2SHong Zhang       PetscReal    *rsum,*rsum2,vabs;
430899cda47SBarry Smith       PetscInt     *jj,*garray=baij->garray,rstart=baij->rstartbs,nz;
431d0f46423SBarry Smith       PetscInt     brow,bcol,col,bs=baij->A->rmap->bs,row,grow,gcol,mbs=amat->mbs;
4320b8dc8d2SHong Zhang       MatScalar    *v;
4330b8dc8d2SHong Zhang 
43474ed9c26SBarry Smith       ierr  = PetscMalloc2(mat->cmap->N,PetscReal,&rsum,mat->cmap->N,PetscReal,&rsum2);CHKERRQ(ierr);
435d0f46423SBarry Smith       ierr  = PetscMemzero(rsum,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
4360b8dc8d2SHong Zhang       /* Amat */
4370b8dc8d2SHong Zhang       v = amat->a; jj = amat->j;
4380b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4390b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4400b8dc8d2SHong Zhang         nz = amat->i[brow+1] - amat->i[brow];
4410b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4420b8dc8d2SHong Zhang           gcol = bs*(rstart + *jj); jj++;
4430b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4440b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4450b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4460b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4470b8dc8d2SHong Zhang               /* non-diagonal block */
4480b8dc8d2SHong Zhang               if (bcol > 0 && vabs > 0.0) rsum[grow+row] += vabs;
4490b8dc8d2SHong Zhang             }
4500b8dc8d2SHong Zhang           }
4510b8dc8d2SHong Zhang         }
4520b8dc8d2SHong Zhang       }
4530b8dc8d2SHong Zhang       /* Bmat */
4540b8dc8d2SHong Zhang       v = bmat->a; jj = bmat->j;
4550b8dc8d2SHong Zhang       for (brow=0; brow<mbs; brow++) {
4560b8dc8d2SHong Zhang         grow = bs*(rstart + brow);
4570b8dc8d2SHong Zhang         nz = bmat->i[brow+1] - bmat->i[brow];
4580b8dc8d2SHong Zhang         for (bcol=0; bcol<nz; bcol++){
4590b8dc8d2SHong Zhang           gcol = bs*garray[*jj]; jj++;
4600b8dc8d2SHong Zhang           for (col=0; col<bs; col++){
4610b8dc8d2SHong Zhang             for (row=0; row<bs; row++){
4620b8dc8d2SHong Zhang               vabs = PetscAbsScalar(*v); v++;
4630b8dc8d2SHong Zhang               rsum[gcol+col] += vabs;
4640b8dc8d2SHong Zhang               rsum[grow+row] += vabs;
4650b8dc8d2SHong Zhang             }
4660b8dc8d2SHong Zhang           }
4670b8dc8d2SHong Zhang         }
4680b8dc8d2SHong Zhang       }
469d0f46423SBarry Smith       ierr = MPI_Allreduce(rsum,rsum2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
4700b8dc8d2SHong Zhang       *norm = 0.0;
471d0f46423SBarry Smith       for (col=0; col<mat->cmap->N; col++) {
4720b8dc8d2SHong Zhang         if (rsum2[col] > *norm) *norm = rsum2[col];
4730b8dc8d2SHong Zhang       }
47474ed9c26SBarry Smith       ierr = PetscFree2(rsum,rsum2);CHKERRQ(ierr);
475a30f8f8cSSatish Balay     } else {
476e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for this norm yet");
477a30f8f8cSSatish Balay     }
478a30f8f8cSSatish Balay   }
479a30f8f8cSSatish Balay   PetscFunctionReturn(0);
480a30f8f8cSSatish Balay }
481a30f8f8cSSatish Balay 
4824a2ae208SSatish Balay #undef __FUNCT__
4834a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPISBAIJ"
484dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)
485a30f8f8cSSatish Balay {
486a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
487dfbe8321SBarry Smith   PetscErrorCode ierr;
4881302d50aSBarry Smith   PetscInt       nstash,reallocs;
489a30f8f8cSSatish Balay   InsertMode     addv;
490a30f8f8cSSatish Balay 
491a30f8f8cSSatish Balay   PetscFunctionBegin;
492a30f8f8cSSatish Balay   if (baij->donotstash) {
493a30f8f8cSSatish Balay     PetscFunctionReturn(0);
494a30f8f8cSSatish Balay   }
495a30f8f8cSSatish Balay 
496a30f8f8cSSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
4977adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
498e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
499a30f8f8cSSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
500a30f8f8cSSatish Balay 
501d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
5021e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
503a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5041e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
505a30f8f8cSSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
5061e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
507a30f8f8cSSatish Balay   PetscFunctionReturn(0);
508a30f8f8cSSatish Balay }
509a30f8f8cSSatish Balay 
5104a2ae208SSatish Balay #undef __FUNCT__
5114a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPISBAIJ"
512dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)
513a30f8f8cSSatish Balay {
514a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij=(Mat_MPISBAIJ*)mat->data;
515a30f8f8cSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)baij->A->data;
5166849ba73SBarry Smith   PetscErrorCode ierr;
51713f74950SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
518e44c0bd4SBarry Smith   PetscInt       *row,*col;
519e44c0bd4SBarry Smith   PetscTruth     other_disassembled;
52013f74950SBarry Smith   PetscMPIInt    n;
521a30f8f8cSSatish Balay   PetscTruth     r1,r2,r3;
522a30f8f8cSSatish Balay   MatScalar      *val;
523a30f8f8cSSatish Balay   InsertMode     addv = mat->insertmode;
524a30f8f8cSSatish Balay 
52591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
526a30f8f8cSSatish Balay   PetscFunctionBegin;
527a30f8f8cSSatish Balay 
528a30f8f8cSSatish Balay   if (!baij->donotstash) {
529a30f8f8cSSatish Balay     while (1) {
530a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
531a30f8f8cSSatish Balay       if (!flg) break;
532a30f8f8cSSatish Balay 
533a30f8f8cSSatish Balay       for (i=0; i<n;) {
534a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
535a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
536a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
537a30f8f8cSSatish Balay         else       ncols = n-i;
538a30f8f8cSSatish Balay         /* Now assemble all these values with a single function call */
539dd6ea824SBarry Smith         ierr = MatSetValues_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
540a30f8f8cSSatish Balay         i = j;
541a30f8f8cSSatish Balay       }
542a30f8f8cSSatish Balay     }
543a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
544a30f8f8cSSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
545a30f8f8cSSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
546a30f8f8cSSatish Balay        restore the original flags */
547a30f8f8cSSatish Balay     r1 = baij->roworiented;
548a30f8f8cSSatish Balay     r2 = a->roworiented;
54991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
550a30f8f8cSSatish Balay     baij->roworiented = PETSC_FALSE;
551a30f8f8cSSatish Balay     a->roworiented    = PETSC_FALSE;
55291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = PETSC_FALSE; /* b->roworinted */
553a30f8f8cSSatish Balay     while (1) {
554a30f8f8cSSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
555a30f8f8cSSatish Balay       if (!flg) break;
556a30f8f8cSSatish Balay 
557a30f8f8cSSatish Balay       for (i=0; i<n;) {
558a30f8f8cSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
559a30f8f8cSSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
560a30f8f8cSSatish Balay         if (j < n) ncols = j-i;
561a30f8f8cSSatish Balay         else       ncols = n-i;
562dd6ea824SBarry Smith         ierr = MatSetValuesBlocked_MPISBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
563a30f8f8cSSatish Balay         i = j;
564a30f8f8cSSatish Balay       }
565a30f8f8cSSatish Balay     }
566a30f8f8cSSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
567a30f8f8cSSatish Balay     baij->roworiented = r1;
568a30f8f8cSSatish Balay     a->roworiented    = r2;
56991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworinted */
570a30f8f8cSSatish Balay   }
571a30f8f8cSSatish Balay 
572a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
573a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
574a30f8f8cSSatish Balay 
575a30f8f8cSSatish Balay   /* determine if any processor has disassembled, if so we must
576a30f8f8cSSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
577a30f8f8cSSatish Balay   /*
578a30f8f8cSSatish Balay      if nonzero structure of submatrix B cannot change then we know that
579a30f8f8cSSatish Balay      no processor disassembled thus we can skip this stuff
580a30f8f8cSSatish Balay   */
581a30f8f8cSSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
5827adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
583a30f8f8cSSatish Balay     if (mat->was_assembled && !other_disassembled) {
584c8407628SSatish Balay       ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr);
585a30f8f8cSSatish Balay     }
586a30f8f8cSSatish Balay   }
587a30f8f8cSSatish Balay 
588a30f8f8cSSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
58940781036SHong Zhang     ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); /* setup Mvctx and sMvctx */
590a30f8f8cSSatish Balay   }
59191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
592a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
593a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
594a30f8f8cSSatish Balay 
59574ed9c26SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
596a30f8f8cSSatish Balay   baij->rowvalues = 0;
5975222a1afSHong Zhang 
598a30f8f8cSSatish Balay   PetscFunctionReturn(0);
599a30f8f8cSSatish Balay }
600a30f8f8cSSatish Balay 
601dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ_ASCIIorDraworSocket"
6046849ba73SBarry Smith static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
605a30f8f8cSSatish Balay {
606a30f8f8cSSatish Balay   Mat_MPISBAIJ      *baij = (Mat_MPISBAIJ*)mat->data;
607dfbe8321SBarry Smith   PetscErrorCode    ierr;
608d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
6091302d50aSBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
61032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
611b0a32e0cSBarry Smith   PetscViewer       sviewer;
612f3ef73ceSBarry Smith   PetscViewerFormat format;
613a30f8f8cSSatish Balay 
614a30f8f8cSSatish Balay   PetscFunctionBegin;
6152692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
6162692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
61732077d6dSBarry Smith   if (iascii) {
618b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
619456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
620a30f8f8cSSatish Balay       MatInfo info;
6217adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
622a30f8f8cSSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
62377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
624d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
625d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
626a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
62777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
628a30f8f8cSSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
62977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
630b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
63107d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
632a30f8f8cSSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
633a30f8f8cSSatish Balay       PetscFunctionReturn(0);
634fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
63577431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
636a30f8f8cSSatish Balay       PetscFunctionReturn(0);
637c1490034SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
638c1490034SHong Zhang       PetscFunctionReturn(0);
639a30f8f8cSSatish Balay     }
640a30f8f8cSSatish Balay   }
641a30f8f8cSSatish Balay 
642a30f8f8cSSatish Balay   if (isdraw) {
643b0a32e0cSBarry Smith     PetscDraw  draw;
644a30f8f8cSSatish Balay     PetscTruth isnull;
645b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
646b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
647a30f8f8cSSatish Balay   }
648a30f8f8cSSatish Balay 
649a30f8f8cSSatish Balay   if (size == 1) {
6507adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651a30f8f8cSSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
652a30f8f8cSSatish Balay   } else {
653a30f8f8cSSatish Balay     /* assemble the entire matrix onto first processor. */
654a30f8f8cSSatish Balay     Mat          A;
65565d70643SHong Zhang     Mat_SeqSBAIJ *Aloc;
65665d70643SHong Zhang     Mat_SeqBAIJ  *Bloc;
657d0f46423SBarry Smith     PetscInt     M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
658a30f8f8cSSatish Balay     MatScalar    *a;
659a30f8f8cSSatish Balay 
660f204ca49SKris Buschelman     /* Should this be the same type as mat? */
6617adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
662a30f8f8cSSatish Balay     if (!rank) {
663f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
664a30f8f8cSSatish Balay     } else {
665f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
666a30f8f8cSSatish Balay     }
667f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
668d0f46423SBarry Smith     ierr = MatMPISBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
66952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
670a30f8f8cSSatish Balay 
671a30f8f8cSSatish Balay     /* copy over the A part */
67265d70643SHong Zhang     Aloc  = (Mat_SeqSBAIJ*)baij->A->data;
673a30f8f8cSSatish Balay     ai    = Aloc->i; aj = Aloc->j; a = Aloc->a;
6741302d50aSBarry Smith     ierr  = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
675a30f8f8cSSatish Balay 
676a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
677e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
678a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
679a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
680e9f7bc9eSHong Zhang         col = (baij->cstartbs+aj[j])*bs;
681a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
682dd6ea824SBarry Smith           ierr = MatSetValues_MPISBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
683a30f8f8cSSatish Balay           col++; a += bs;
684a30f8f8cSSatish Balay         }
685a30f8f8cSSatish Balay       }
686a30f8f8cSSatish Balay     }
687a30f8f8cSSatish Balay     /* copy over the B part */
68865d70643SHong Zhang     Bloc = (Mat_SeqBAIJ*)baij->B->data;
68965d70643SHong Zhang     ai = Bloc->i; aj = Bloc->j; a = Bloc->a;
690a30f8f8cSSatish Balay     for (i=0; i<mbs; i++) {
691e9f7bc9eSHong Zhang 
692e9f7bc9eSHong Zhang       rvals[0] = bs*(baij->rstartbs + i);
693a30f8f8cSSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
694a30f8f8cSSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
695a30f8f8cSSatish Balay         col = baij->garray[aj[j]]*bs;
696a30f8f8cSSatish Balay         for (k=0; k<bs; k++) {
697799bb49cSHong Zhang           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
698a30f8f8cSSatish Balay           col++; a += bs;
699a30f8f8cSSatish Balay         }
700a30f8f8cSSatish Balay       }
701a30f8f8cSSatish Balay     }
702a30f8f8cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
703a30f8f8cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
704a30f8f8cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
705a30f8f8cSSatish Balay     /*
706a30f8f8cSSatish Balay        Everyone has to call to draw the matrix since the graphics waits are
707b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
708a30f8f8cSSatish Balay     */
709b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
71065d70643SHong Zhang     if (!rank) {
7117adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPISBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
712a30f8f8cSSatish Balay       ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
713a30f8f8cSSatish Balay     }
714b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
715a30f8f8cSSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
716a30f8f8cSSatish Balay   }
717a30f8f8cSSatish Balay   PetscFunctionReturn(0);
718a30f8f8cSSatish Balay }
719a30f8f8cSSatish Balay 
7204a2ae208SSatish Balay #undef __FUNCT__
7214a2ae208SSatish Balay #define __FUNCT__ "MatView_MPISBAIJ"
722dfbe8321SBarry Smith PetscErrorCode MatView_MPISBAIJ(Mat mat,PetscViewer viewer)
723a30f8f8cSSatish Balay {
724dfbe8321SBarry Smith   PetscErrorCode ierr;
72532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
726a30f8f8cSSatish Balay 
727a30f8f8cSSatish Balay   PetscFunctionBegin;
7282692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
7292692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7302692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
7312692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
73232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
733a30f8f8cSSatish Balay     ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
734a30f8f8cSSatish Balay   } else {
735e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name);
736a30f8f8cSSatish Balay   }
737a30f8f8cSSatish Balay   PetscFunctionReturn(0);
738a30f8f8cSSatish Balay }
739a30f8f8cSSatish Balay 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPISBAIJ"
742dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
743a30f8f8cSSatish Balay {
744a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746a30f8f8cSSatish Balay 
747a30f8f8cSSatish Balay   PetscFunctionBegin;
748a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG)
749d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
750a30f8f8cSSatish Balay #endif
751a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
752a30f8f8cSSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
753a30f8f8cSSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
754a30f8f8cSSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
755a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
7569c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
757a30f8f8cSSatish Balay #else
75805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
759a30f8f8cSSatish Balay #endif
76005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
761a30f8f8cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
762a30f8f8cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
76340781036SHong Zhang   if (baij->slvec0) {
76440781036SHong Zhang     ierr = VecDestroy(baij->slvec0);CHKERRQ(ierr);
76540781036SHong Zhang     ierr = VecDestroy(baij->slvec0b);CHKERRQ(ierr);
76640781036SHong Zhang   }
76740781036SHong Zhang   if (baij->slvec1) {
76840781036SHong Zhang     ierr = VecDestroy(baij->slvec1);CHKERRQ(ierr);
76940781036SHong Zhang     ierr = VecDestroy(baij->slvec1a);CHKERRQ(ierr);
77040781036SHong Zhang     ierr = VecDestroy(baij->slvec1b);CHKERRQ(ierr);
77140781036SHong Zhang   }
77240781036SHong Zhang   if (baij->sMvctx)  {ierr = VecScatterDestroy(baij->sMvctx);CHKERRQ(ierr);}
7735755ff91SHong Zhang   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
77405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
77505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
776fa22f6d0SBarry Smith   if (baij->diag) {ierr = VecDestroy(baij->diag);CHKERRQ(ierr);}
777fa22f6d0SBarry Smith   if (baij->bb1) {ierr = VecDestroy(baij->bb1);CHKERRQ(ierr);}
778fa22f6d0SBarry Smith   if (baij->xx1) {ierr = VecDestroy(baij->xx1);CHKERRQ(ierr);}
77965460251SBarry Smith #if defined(PETSC_USE_SCALAR_MAT_SINGLE)
78005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
781a30f8f8cSSatish Balay #endif
78259ffdab8SBarry Smith   ierr = PetscFree(baij->in_loc);CHKERRQ(ierr);
78359ffdab8SBarry Smith   ierr = PetscFree(baij->v_loc);CHKERRQ(ierr);
784899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
785a30f8f8cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
786901853e0SKris Buschelman 
787dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
788901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
789901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
790901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
791901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
792a30f8f8cSSatish Balay   PetscFunctionReturn(0);
793a30f8f8cSSatish Balay }
794a30f8f8cSSatish Balay 
7954a2ae208SSatish Balay #undef __FUNCT__
796547795f9SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_Hermitian"
797547795f9SHong Zhang PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)
798547795f9SHong Zhang {
799547795f9SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
800547795f9SHong Zhang   PetscErrorCode ierr;
801547795f9SHong Zhang   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
802547795f9SHong Zhang   PetscScalar    *x,*from;
803547795f9SHong Zhang 
804547795f9SHong Zhang   PetscFunctionBegin;
805547795f9SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
806e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
807547795f9SHong Zhang 
808547795f9SHong Zhang   /* diagonal part */
809547795f9SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
810547795f9SHong Zhang   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
811547795f9SHong Zhang 
812547795f9SHong Zhang   /* subdiagonal part */
813547795f9SHong Zhang   ierr = (*a->B->ops->multhermitiantranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
814547795f9SHong Zhang 
815547795f9SHong Zhang   /* copy x into the vec slvec0 */
816547795f9SHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
817547795f9SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
818547795f9SHong Zhang 
819547795f9SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
820547795f9SHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
821547795f9SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
822547795f9SHong Zhang 
823547795f9SHong Zhang   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824547795f9SHong Zhang   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
825547795f9SHong Zhang   /* supperdiagonal part */
826547795f9SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
827547795f9SHong Zhang   PetscFunctionReturn(0);
828547795f9SHong Zhang }
829547795f9SHong Zhang 
830547795f9SHong Zhang #undef __FUNCT__
831a9d4b620SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ"
832dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)
833a9d4b620SHong Zhang {
834a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
835dfbe8321SBarry Smith   PetscErrorCode ierr;
836d0f46423SBarry Smith   PetscInt       nt,mbs=a->mbs,bs=A->rmap->bs;
837fa22f6d0SBarry Smith   PetscScalar    *x,*from;
838a9d4b620SHong Zhang 
839a9d4b620SHong Zhang   PetscFunctionBegin;
840a9d4b620SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
841e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
842a9d4b620SHong Zhang 
843a9d4b620SHong Zhang   /* diagonal part */
844a9d4b620SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,a->slvec1a);CHKERRQ(ierr);
845fa22f6d0SBarry Smith   ierr = VecSet(a->slvec1b,0.0);CHKERRQ(ierr);
846a9d4b620SHong Zhang 
847a9d4b620SHong Zhang   /* subdiagonal part */
848a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
849fc165ae2SBarry Smith 
850a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
8511ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
8521ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
853a9d4b620SHong Zhang 
854fc165ae2SBarry Smith   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
855fc165ae2SBarry Smith   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
8561ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
857fc165ae2SBarry Smith 
858fc165ae2SBarry Smith   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
859ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
860a9d4b620SHong Zhang   /* supperdiagonal part */
861a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,yy);CHKERRQ(ierr);
862a9d4b620SHong Zhang   PetscFunctionReturn(0);
863a9d4b620SHong Zhang }
864a9d4b620SHong Zhang 
865a9d4b620SHong Zhang #undef __FUNCT__
86640781036SHong Zhang #define __FUNCT__ "MatMult_MPISBAIJ_2comm"
867dfbe8321SBarry Smith PetscErrorCode MatMult_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy)
868a30f8f8cSSatish Balay {
869a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
870dfbe8321SBarry Smith   PetscErrorCode ierr;
8711302d50aSBarry Smith   PetscInt       nt;
872a30f8f8cSSatish Balay 
873a30f8f8cSSatish Balay   PetscFunctionBegin;
874a30f8f8cSSatish Balay   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
875e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
876e7e72b3dSBarry Smith 
877a30f8f8cSSatish Balay   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
878e7e72b3dSBarry Smith   if (nt != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
87965d70643SHong Zhang 
880ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
881b941877fSHong Zhang   /* do diagonal part */
882b941877fSHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
883b941877fSHong Zhang   /* do supperdiagonal part */
884ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
885b941877fSHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
886b941877fSHong Zhang   /* do subdiagonal part */
887b941877fSHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
888ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
889ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
89065d70643SHong Zhang 
891a30f8f8cSSatish Balay   PetscFunctionReturn(0);
892a30f8f8cSSatish Balay }
893a30f8f8cSSatish Balay 
8944a2ae208SSatish Balay #undef __FUNCT__
8954a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPISBAIJ"
896dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
897a30f8f8cSSatish Balay {
898de8b6608SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
899dfbe8321SBarry Smith   PetscErrorCode ierr;
900d0f46423SBarry Smith   PetscInt       mbs=a->mbs,bs=A->rmap->bs;
901a9d4b620SHong Zhang   PetscScalar    *x,*from,zero=0.0;
902a9d4b620SHong Zhang 
903a9d4b620SHong Zhang   PetscFunctionBegin;
904a9d4b620SHong Zhang   /*
9057adad957SLisandro Dalcin   PetscSynchronizedPrintf(((PetscObject)A)->comm," MatMultAdd is called ...\n");
9067adad957SLisandro Dalcin   PetscSynchronizedFlush(((PetscObject)A)->comm);
907a9d4b620SHong Zhang   */
908a9d4b620SHong Zhang   /* diagonal part */
909a9d4b620SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,a->slvec1a);CHKERRQ(ierr);
9102dcb1b2aSMatthew Knepley   ierr = VecSet(a->slvec1b,zero);CHKERRQ(ierr);
911a9d4b620SHong Zhang 
912a9d4b620SHong Zhang   /* subdiagonal part */
913a9d4b620SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->slvec0b);CHKERRQ(ierr);
914a9d4b620SHong Zhang 
915a9d4b620SHong Zhang   /* copy x into the vec slvec0 */
9161ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&from);CHKERRQ(ierr);
9171ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
918a9d4b620SHong Zhang   ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
9191ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&from);CHKERRQ(ierr);
920a9d4b620SHong Zhang 
921ca9f406cSSatish Balay   ierr = VecScatterBegin(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9221ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
923ca9f406cSSatish Balay   ierr = VecScatterEnd(a->sMvctx,a->slvec0,a->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
924a9d4b620SHong Zhang 
925a9d4b620SHong Zhang   /* supperdiagonal part */
926a9d4b620SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->slvec1b,a->slvec1a,zz);CHKERRQ(ierr);
927a9d4b620SHong Zhang 
928a9d4b620SHong Zhang   PetscFunctionReturn(0);
929a9d4b620SHong Zhang }
930a9d4b620SHong Zhang 
931a9d4b620SHong Zhang #undef __FUNCT__
932a9d4b620SHong Zhang #define __FUNCT__ "MatMultAdd_MPISBAIJ_2comm"
933dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPISBAIJ_2comm(Mat A,Vec xx,Vec yy,Vec zz)
934a9d4b620SHong Zhang {
935a9d4b620SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
936dfbe8321SBarry Smith   PetscErrorCode ierr;
937a30f8f8cSSatish Balay 
938a30f8f8cSSatish Balay   PetscFunctionBegin;
939ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
940b941877fSHong Zhang   /* do diagonal part */
941b941877fSHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
942b941877fSHong Zhang   /* do supperdiagonal part */
943ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
944de8b6608SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
945de8b6608SHong Zhang 
946b941877fSHong Zhang   /* do subdiagonal part */
947a30f8f8cSSatish Balay   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
948ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
949ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
950aa482183SHong Zhang 
951a30f8f8cSSatish Balay   PetscFunctionReturn(0);
952a30f8f8cSSatish Balay }
953a30f8f8cSSatish Balay 
954a30f8f8cSSatish Balay /*
955a30f8f8cSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
956a30f8f8cSSatish Balay    diagonal block
957a30f8f8cSSatish Balay */
9584a2ae208SSatish Balay #undef __FUNCT__
9594a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPISBAIJ"
960dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A,Vec v)
961a30f8f8cSSatish Balay {
962a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
963dfbe8321SBarry Smith   PetscErrorCode ierr;
964a30f8f8cSSatish Balay 
965a30f8f8cSSatish Balay   PetscFunctionBegin;
966e32f2f54SBarry Smith   /* if (a->rmap->N != a->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
967a30f8f8cSSatish Balay   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
968a30f8f8cSSatish Balay   PetscFunctionReturn(0);
969a30f8f8cSSatish Balay }
970a30f8f8cSSatish Balay 
9714a2ae208SSatish Balay #undef __FUNCT__
9724a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPISBAIJ"
973f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPISBAIJ(Mat A,PetscScalar aa)
974a30f8f8cSSatish Balay {
975a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
976dfbe8321SBarry Smith   PetscErrorCode ierr;
977a30f8f8cSSatish Balay 
978a30f8f8cSSatish Balay   PetscFunctionBegin;
979f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
980f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
981a30f8f8cSSatish Balay   PetscFunctionReturn(0);
982a30f8f8cSSatish Balay }
983a30f8f8cSSatish Balay 
9844a2ae208SSatish Balay #undef __FUNCT__
9854a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPISBAIJ"
9861302d50aSBarry Smith PetscErrorCode MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
987a30f8f8cSSatish Balay {
988d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
989d0d4cfc2SHong Zhang   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
990d0d4cfc2SHong Zhang   PetscErrorCode ierr;
991d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
992d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
993899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->rstartbs;
994d0d4cfc2SHong Zhang 
995a30f8f8cSSatish Balay   PetscFunctionBegin;
996e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
997d0d4cfc2SHong Zhang   mat->getrowactive = PETSC_TRUE;
998d0d4cfc2SHong Zhang 
999d0d4cfc2SHong Zhang   if (!mat->rowvalues && (idx || v)) {
1000d0d4cfc2SHong Zhang     /*
1001d0d4cfc2SHong Zhang         allocate enough space to hold information from the longest row.
1002d0d4cfc2SHong Zhang     */
1003d0d4cfc2SHong Zhang     Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data;
1004d0d4cfc2SHong Zhang     Mat_SeqBAIJ  *Ba = (Mat_SeqBAIJ*)mat->B->data;
1005d0d4cfc2SHong Zhang     PetscInt     max = 1,mbs = mat->mbs,tmp;
1006d0d4cfc2SHong Zhang     for (i=0; i<mbs; i++) {
1007d0d4cfc2SHong Zhang       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */
1008d0d4cfc2SHong Zhang       if (max < tmp) { max = tmp; }
1009d0d4cfc2SHong Zhang     }
101074ed9c26SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1011d0d4cfc2SHong Zhang   }
1012d0d4cfc2SHong Zhang 
1013e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1014d0d4cfc2SHong Zhang   lrow = row - brstart;  /* local row index */
1015d0d4cfc2SHong Zhang 
1016d0d4cfc2SHong Zhang   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1017d0d4cfc2SHong Zhang   if (!v)   {pvA = 0; pvB = 0;}
1018d0d4cfc2SHong Zhang   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1019d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1020d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1021d0d4cfc2SHong Zhang   nztot = nzA + nzB;
1022d0d4cfc2SHong Zhang 
1023d0d4cfc2SHong Zhang   cmap  = mat->garray;
1024d0d4cfc2SHong Zhang   if (v  || idx) {
1025d0d4cfc2SHong Zhang     if (nztot) {
1026d0d4cfc2SHong Zhang       /* Sort by increasing column numbers, assuming A and B already sorted */
1027d0d4cfc2SHong Zhang       PetscInt imark = -1;
1028d0d4cfc2SHong Zhang       if (v) {
1029d0d4cfc2SHong Zhang         *v = v_p = mat->rowvalues;
1030d0d4cfc2SHong Zhang         for (i=0; i<nzB; i++) {
1031d0d4cfc2SHong Zhang           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1032d0d4cfc2SHong Zhang           else break;
1033d0d4cfc2SHong Zhang         }
1034d0d4cfc2SHong Zhang         imark = i;
1035d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1036d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1037d0d4cfc2SHong Zhang       }
1038d0d4cfc2SHong Zhang       if (idx) {
1039d0d4cfc2SHong Zhang         *idx = idx_p = mat->rowindices;
1040d0d4cfc2SHong Zhang         if (imark > -1) {
1041d0d4cfc2SHong Zhang           for (i=0; i<imark; i++) {
1042d0d4cfc2SHong Zhang             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1043d0d4cfc2SHong Zhang           }
1044d0d4cfc2SHong Zhang         } else {
1045d0d4cfc2SHong Zhang           for (i=0; i<nzB; i++) {
1046d0d4cfc2SHong Zhang             if (cmap[cworkB[i]/bs] < cstart)
1047d0d4cfc2SHong Zhang               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1048d0d4cfc2SHong Zhang             else break;
1049d0d4cfc2SHong Zhang           }
1050d0d4cfc2SHong Zhang           imark = i;
1051d0d4cfc2SHong Zhang         }
1052d0d4cfc2SHong Zhang         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1053d0d4cfc2SHong Zhang         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1054d0d4cfc2SHong Zhang       }
1055d0d4cfc2SHong Zhang     } else {
1056d0d4cfc2SHong Zhang       if (idx) *idx = 0;
1057d0d4cfc2SHong Zhang       if (v)   *v   = 0;
1058d0d4cfc2SHong Zhang     }
1059d0d4cfc2SHong Zhang   }
1060d0d4cfc2SHong Zhang   *nz = nztot;
1061d0d4cfc2SHong Zhang   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1062d0d4cfc2SHong Zhang   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1063a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1064a30f8f8cSSatish Balay }
1065a30f8f8cSSatish Balay 
10664a2ae208SSatish Balay #undef __FUNCT__
10674a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPISBAIJ"
10681302d50aSBarry Smith PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1069a30f8f8cSSatish Balay {
1070a30f8f8cSSatish Balay   Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data;
1071a30f8f8cSSatish Balay 
1072a30f8f8cSSatish Balay   PetscFunctionBegin;
1073e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow() must be called first");
1074a30f8f8cSSatish Balay   baij->getrowactive = PETSC_FALSE;
1075a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1076a30f8f8cSSatish Balay }
1077a30f8f8cSSatish Balay 
10784a2ae208SSatish Balay #undef __FUNCT__
1079d0d4cfc2SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_MPISBAIJ"
1080d0d4cfc2SHong Zhang PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1081d0d4cfc2SHong Zhang {
1082d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1083d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1084d0d4cfc2SHong Zhang 
1085d0d4cfc2SHong Zhang   PetscFunctionBegin;
1086d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_TRUE;
1087d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1088d0d4cfc2SHong Zhang }
1089d0d4cfc2SHong Zhang #undef __FUNCT__
1090d0d4cfc2SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_MPISBAIJ"
1091d0d4cfc2SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1092d0d4cfc2SHong Zhang {
1093d0d4cfc2SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1094d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1095d0d4cfc2SHong Zhang 
1096d0d4cfc2SHong Zhang   PetscFunctionBegin;
1097d0d4cfc2SHong Zhang   aA->getrow_utriangular = PETSC_FALSE;
1098d0d4cfc2SHong Zhang   PetscFunctionReturn(0);
1099d0d4cfc2SHong Zhang }
1100d0d4cfc2SHong Zhang 
1101d0d4cfc2SHong Zhang #undef __FUNCT__
110299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPISBAIJ"
110399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
110499cafbc1SBarry Smith {
110599cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
110699cafbc1SBarry Smith   PetscErrorCode ierr;
110799cafbc1SBarry Smith 
110899cafbc1SBarry Smith   PetscFunctionBegin;
110999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
111099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
111199cafbc1SBarry Smith   PetscFunctionReturn(0);
111299cafbc1SBarry Smith }
111399cafbc1SBarry Smith 
111499cafbc1SBarry Smith #undef __FUNCT__
111599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPISBAIJ"
111699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
111799cafbc1SBarry Smith {
111899cafbc1SBarry Smith   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
111999cafbc1SBarry Smith   PetscErrorCode ierr;
112099cafbc1SBarry Smith 
112199cafbc1SBarry Smith   PetscFunctionBegin;
112299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
112399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
112499cafbc1SBarry Smith   PetscFunctionReturn(0);
112599cafbc1SBarry Smith }
112699cafbc1SBarry Smith 
112799cafbc1SBarry Smith #undef __FUNCT__
11284a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPISBAIJ"
1129dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1130a30f8f8cSSatish Balay {
1131a30f8f8cSSatish Balay   Mat_MPISBAIJ   *l = (Mat_MPISBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133a30f8f8cSSatish Balay 
1134a30f8f8cSSatish Balay   PetscFunctionBegin;
1135a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
1136a30f8f8cSSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
1137a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1138a30f8f8cSSatish Balay }
1139a30f8f8cSSatish Balay 
11404a2ae208SSatish Balay #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPISBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1143a30f8f8cSSatish Balay {
1144a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)matin->data;
1145a30f8f8cSSatish Balay   Mat            A = a->A,B = a->B;
1146dfbe8321SBarry Smith   PetscErrorCode ierr;
1147a30f8f8cSSatish Balay   PetscReal      isend[5],irecv[5];
1148a30f8f8cSSatish Balay 
1149a30f8f8cSSatish Balay   PetscFunctionBegin;
1150d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
1151a30f8f8cSSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
1152a30f8f8cSSatish Balay   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1153a30f8f8cSSatish Balay   isend[3] = info->memory;  isend[4] = info->mallocs;
1154a30f8f8cSSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
1155a30f8f8cSSatish Balay   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1156a30f8f8cSSatish Balay   isend[3] += info->memory;  isend[4] += info->mallocs;
1157a30f8f8cSSatish Balay   if (flag == MAT_LOCAL) {
1158a30f8f8cSSatish Balay     info->nz_used      = isend[0];
1159a30f8f8cSSatish Balay     info->nz_allocated = isend[1];
1160a30f8f8cSSatish Balay     info->nz_unneeded  = isend[2];
1161a30f8f8cSSatish Balay     info->memory       = isend[3];
1162a30f8f8cSSatish Balay     info->mallocs      = isend[4];
1163a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
11647adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
1165a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1166a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1167a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1168a30f8f8cSSatish Balay     info->memory       = irecv[3];
1169a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1170a30f8f8cSSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
11717adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
1172a30f8f8cSSatish Balay     info->nz_used      = irecv[0];
1173a30f8f8cSSatish Balay     info->nz_allocated = irecv[1];
1174a30f8f8cSSatish Balay     info->nz_unneeded  = irecv[2];
1175a30f8f8cSSatish Balay     info->memory       = irecv[3];
1176a30f8f8cSSatish Balay     info->mallocs      = irecv[4];
1177a30f8f8cSSatish Balay   } else {
1178e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
1179a30f8f8cSSatish Balay   }
1180a30f8f8cSSatish Balay   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
1181a30f8f8cSSatish Balay   info->fill_ratio_needed = 0;
1182a30f8f8cSSatish Balay   info->factor_mallocs    = 0;
1183a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1184a30f8f8cSSatish Balay }
1185a30f8f8cSSatish Balay 
11864a2ae208SSatish Balay #undef __FUNCT__
11874a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPISBAIJ"
11884e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscTruth flg)
1189a30f8f8cSSatish Balay {
1190a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1191d0d4cfc2SHong Zhang   Mat_SeqSBAIJ   *aA = (Mat_SeqSBAIJ*)a->A->data;
1192dfbe8321SBarry Smith   PetscErrorCode ierr;
1193a30f8f8cSSatish Balay 
1194a30f8f8cSSatish Balay   PetscFunctionBegin;
1195e98b92d7SKris Buschelman   switch (op) {
1196512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1197e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
119828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1199a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1200e98b92d7SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12014e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12024e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1203e98b92d7SKris Buschelman     break;
1204e98b92d7SKris Buschelman   case MAT_ROW_ORIENTED:
12054e0d8c25SBarry Smith     a->roworiented = flg;
12064e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
12074e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
1208e98b92d7SKris Buschelman     break;
12094e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1210290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1211e98b92d7SKris Buschelman     break;
1212e98b92d7SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
12134e0d8c25SBarry Smith     a->donotstash = flg;
1214e98b92d7SKris Buschelman     break;
1215e98b92d7SKris Buschelman   case MAT_USE_HASH_TABLE:
12164e0d8c25SBarry Smith     a->ht_flag = flg;
1217e98b92d7SKris Buschelman     break;
12189a4540c5SBarry Smith   case MAT_HERMITIAN:
1219e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
1220eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1221547795f9SHong Zhang     A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1222eeffb40dSHong Zhang     break;
122377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
1224eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1225eeffb40dSHong Zhang     break;
122677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1227eeffb40dSHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
1228eeffb40dSHong Zhang     break;
12299a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1230e32f2f54SBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix must be symmetric");
1231290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
123277e54ba9SKris Buschelman     break;
1233d0d4cfc2SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
12344e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1235d0d4cfc2SHong Zhang     break;
1236d0d4cfc2SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
12374e0d8c25SBarry Smith     aA->ignore_ltriangular = flg;
1238d0d4cfc2SHong Zhang     break;
1239d0d4cfc2SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
12404e0d8c25SBarry Smith     aA->getrow_utriangular = flg;
1241d0d4cfc2SHong Zhang     break;
1242e98b92d7SKris Buschelman   default:
1243e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
1244a30f8f8cSSatish Balay   }
1245a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1246a30f8f8cSSatish Balay }
1247a30f8f8cSSatish Balay 
12484a2ae208SSatish Balay #undef __FUNCT__
12498115998fSBarry Smith #define __FUNCT__ "MatTranspose_MPISBAIJ"
1250fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat *B)
1251a30f8f8cSSatish Balay {
1252dfbe8321SBarry Smith   PetscErrorCode ierr;
1253a30f8f8cSSatish Balay   PetscFunctionBegin;
1254815cbec1SBarry Smith   if (MAT_INITIAL_MATRIX || *B != A) {
1255999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
1256fc4dec0aSBarry Smith   }
12578115998fSBarry Smith   PetscFunctionReturn(0);
1258a30f8f8cSSatish Balay }
1259a30f8f8cSSatish Balay 
12604a2ae208SSatish Balay #undef __FUNCT__
12614a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPISBAIJ"
1262dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)
1263a30f8f8cSSatish Balay {
1264a30f8f8cSSatish Balay   Mat_MPISBAIJ   *baij = (Mat_MPISBAIJ*)mat->data;
1265a30f8f8cSSatish Balay   Mat            a=baij->A, b=baij->B;
1266dfbe8321SBarry Smith   PetscErrorCode ierr;
12675e90f9d9SHong Zhang   PetscInt       nv,m,n;
1268b3bf805bSHong Zhang   PetscTruth     flg;
1269a30f8f8cSSatish Balay 
1270a30f8f8cSSatish Balay   PetscFunctionBegin;
1271a30f8f8cSSatish Balay   if (ll != rr){
1272b3bf805bSHong Zhang     ierr = VecEqual(ll,rr,&flg);CHKERRQ(ierr);
1273e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"For symmetric format, left and right scaling vectors must be same\n");
1274a30f8f8cSSatish Balay   }
1275b3bf805bSHong Zhang   if (!ll) PetscFunctionReturn(0);
1276b3bf805bSHong Zhang 
12775e90f9d9SHong Zhang   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
1278e32f2f54SBarry Smith   if (m != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"For symmetric format, local size %d %d must be same",m,n);
1279b3bf805bSHong Zhang 
12805e90f9d9SHong Zhang   ierr = VecGetLocalSize(rr,&nv);CHKERRQ(ierr);
1281e32f2f54SBarry Smith   if (nv!=n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left and right vector non-conforming local size");
12825e90f9d9SHong Zhang 
1283ca9f406cSSatish Balay   ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12845e90f9d9SHong Zhang 
12855e90f9d9SHong Zhang   /* left diagonalscale the off-diagonal part */
1286a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
12875e90f9d9SHong Zhang 
12885e90f9d9SHong Zhang   /* scale the diagonal part */
1289a30f8f8cSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
1290a30f8f8cSSatish Balay 
12915e90f9d9SHong Zhang   /* right diagonalscale the off-diagonal part */
1292ca9f406cSSatish Balay   ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1293a30f8f8cSSatish Balay   ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
1294a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1295a30f8f8cSSatish Balay }
1296a30f8f8cSSatish Balay 
12974a2ae208SSatish Balay #undef __FUNCT__
12984a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPISBAIJ"
1299dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1300a30f8f8cSSatish Balay {
1301f3566a2aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
1302dfbe8321SBarry Smith   PetscErrorCode ierr;
1303a30f8f8cSSatish Balay 
1304a30f8f8cSSatish Balay   PetscFunctionBegin;
1305a30f8f8cSSatish Balay   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
1306a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1307a30f8f8cSSatish Balay }
1308a30f8f8cSSatish Balay 
13096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *);
1310a30f8f8cSSatish Balay 
13114a2ae208SSatish Balay #undef __FUNCT__
13124a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPISBAIJ"
1313dfbe8321SBarry Smith PetscErrorCode MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag)
1314a30f8f8cSSatish Balay {
1315a30f8f8cSSatish Balay   Mat_MPISBAIJ   *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data;
1316a30f8f8cSSatish Balay   Mat            a,b,c,d;
1317a30f8f8cSSatish Balay   PetscTruth     flg;
1318dfbe8321SBarry Smith   PetscErrorCode ierr;
1319a30f8f8cSSatish Balay 
1320a30f8f8cSSatish Balay   PetscFunctionBegin;
1321a30f8f8cSSatish Balay   a = matA->A; b = matA->B;
1322a30f8f8cSSatish Balay   c = matB->A; d = matB->B;
1323a30f8f8cSSatish Balay 
1324a30f8f8cSSatish Balay   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1325abc0a331SBarry Smith   if (flg) {
1326a30f8f8cSSatish Balay     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1327a30f8f8cSSatish Balay   }
13287adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
1329a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1330a30f8f8cSSatish Balay }
1331a30f8f8cSSatish Balay 
13324a2ae208SSatish Balay #undef __FUNCT__
13333c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPISBAIJ"
13343c896bc6SHong Zhang PetscErrorCode MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)
13353c896bc6SHong Zhang {
13363c896bc6SHong Zhang   PetscErrorCode ierr;
13373c896bc6SHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ *)A->data;
13383c896bc6SHong Zhang   Mat_MPISBAIJ   *b = (Mat_MPISBAIJ *)B->data;
13393c896bc6SHong Zhang 
13403c896bc6SHong Zhang   PetscFunctionBegin;
13413c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
13423c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
1343d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
13443c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1345d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
13463c896bc6SHong Zhang   } else {
13473c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
13483c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
13493c896bc6SHong Zhang   }
13503c896bc6SHong Zhang   PetscFunctionReturn(0);
13513c896bc6SHong Zhang }
13523c896bc6SHong Zhang 
13533c896bc6SHong Zhang #undef __FUNCT__
13544a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPISBAIJ"
1355dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPISBAIJ(Mat A)
1356273d9f13SBarry Smith {
1357dfbe8321SBarry Smith   PetscErrorCode ierr;
1358273d9f13SBarry Smith 
1359273d9f13SBarry Smith   PetscFunctionBegin;
1360db4efbfdSBarry Smith   ierr = MatMPISBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1361273d9f13SBarry Smith   PetscFunctionReturn(0);
1362273d9f13SBarry Smith }
1363a5e6ed63SBarry Smith 
13644fe895cdSHong Zhang #undef __FUNCT__
13654fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPISBAIJ"
13664fe895cdSHong Zhang PetscErrorCode MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
13674fe895cdSHong Zhang {
13684fe895cdSHong Zhang   PetscErrorCode ierr;
13694fe895cdSHong Zhang   Mat_MPISBAIJ   *xx=(Mat_MPISBAIJ *)X->data,*yy=(Mat_MPISBAIJ *)Y->data;
13704fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
13714fe895cdSHong Zhang   Mat_SeqSBAIJ   *xa,*ya;
13724fe895cdSHong Zhang   Mat_SeqBAIJ    *xb,*yb;
13734fe895cdSHong Zhang 
13744fe895cdSHong Zhang   PetscFunctionBegin;
13754fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
13764fe895cdSHong Zhang     PetscScalar alpha = a;
13774fe895cdSHong Zhang     xa = (Mat_SeqSBAIJ *)xx->A->data;
13784fe895cdSHong Zhang     ya = (Mat_SeqSBAIJ *)yy->A->data;
13790805154bSBarry Smith     bnz = PetscBLASIntCast(xa->nz);
13804fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xa->a,&one,ya->a,&one);
13814fe895cdSHong Zhang     xb = (Mat_SeqBAIJ *)xx->B->data;
13824fe895cdSHong Zhang     yb = (Mat_SeqBAIJ *)yy->B->data;
13830805154bSBarry Smith     bnz = PetscBLASIntCast(xb->nz);
13844fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,xb->a,&one,yb->a,&one);
13854fe895cdSHong Zhang   } else {
1386d0d4cfc2SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
13874fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1388d0d4cfc2SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
13894fe895cdSHong Zhang   }
13904fe895cdSHong Zhang   PetscFunctionReturn(0);
13914fe895cdSHong Zhang }
13924fe895cdSHong Zhang 
1393a5e6ed63SBarry Smith #undef __FUNCT__
13946363de48SJed Brown #define __FUNCT__ "MatSetBlockSize_MPISBAIJ"
13956363de48SJed Brown PetscErrorCode MatSetBlockSize_MPISBAIJ(Mat A,PetscInt bs)
13966363de48SJed Brown {
13976363de48SJed Brown   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
13986363de48SJed Brown   PetscInt        rbs,cbs;
13996363de48SJed Brown   PetscErrorCode  ierr;
14006363de48SJed Brown 
14016363de48SJed Brown   PetscFunctionBegin;
14026363de48SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
14036363de48SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
14046363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
14056363de48SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1406e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,rbs);
1407e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with SBAIJ %d",bs,cbs);
14086363de48SJed Brown   PetscFunctionReturn(0);
14096363de48SJed Brown }
14106363de48SJed Brown 
14116363de48SJed Brown #undef __FUNCT__
1412a5e6ed63SBarry Smith #define __FUNCT__ "MatGetSubMatrices_MPISBAIJ"
14131302d50aSBarry Smith PetscErrorCode MatGetSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1414a5e6ed63SBarry Smith {
14156849ba73SBarry Smith   PetscErrorCode ierr;
14161302d50aSBarry Smith   PetscInt       i;
1417a5e6ed63SBarry Smith   PetscTruth     flg;
1418a5e6ed63SBarry Smith 
14196849ba73SBarry Smith   PetscFunctionBegin;
1420a5e6ed63SBarry Smith   for (i=0; i<n; i++) {
1421a5e6ed63SBarry Smith     ierr = ISEqual(irow[i],icol[i],&flg);CHKERRQ(ierr);
1422e7e72b3dSBarry Smith     if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only get symmetric submatrix for MPISBAIJ matrices");
1423a5e6ed63SBarry Smith   }
1424a5e6ed63SBarry Smith   ierr = MatGetSubMatrices_MPIBAIJ(A,n,irow,icol,scall,B);CHKERRQ(ierr);
1425a5e6ed63SBarry Smith   PetscFunctionReturn(0);
1426a5e6ed63SBarry Smith }
1427a5e6ed63SBarry Smith 
1428a5e6ed63SBarry Smith 
1429a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/
1430a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = {
1431a30f8f8cSSatish Balay        MatSetValues_MPISBAIJ,
1432a30f8f8cSSatish Balay        MatGetRow_MPISBAIJ,
1433a30f8f8cSSatish Balay        MatRestoreRow_MPISBAIJ,
1434a9d4b620SHong Zhang        MatMult_MPISBAIJ,
143597304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1436431c96f7SBarry Smith        MatMult_MPISBAIJ,       /* transpose versions are same as non-transpose */
1437431c96f7SBarry Smith        MatMultAdd_MPISBAIJ,
1438a30f8f8cSSatish Balay        0,
1439a30f8f8cSSatish Balay        0,
1440a30f8f8cSSatish Balay        0,
144197304618SKris Buschelman /*10*/ 0,
1442a30f8f8cSSatish Balay        0,
1443a30f8f8cSSatish Balay        0,
144441f059aeSBarry Smith        MatSOR_MPISBAIJ,
1445a30f8f8cSSatish Balay        MatTranspose_MPISBAIJ,
144697304618SKris Buschelman /*15*/ MatGetInfo_MPISBAIJ,
1447a30f8f8cSSatish Balay        MatEqual_MPISBAIJ,
1448a30f8f8cSSatish Balay        MatGetDiagonal_MPISBAIJ,
1449a30f8f8cSSatish Balay        MatDiagonalScale_MPISBAIJ,
1450a30f8f8cSSatish Balay        MatNorm_MPISBAIJ,
145197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPISBAIJ,
1452a30f8f8cSSatish Balay        MatAssemblyEnd_MPISBAIJ,
1453a30f8f8cSSatish Balay        MatSetOption_MPISBAIJ,
1454a30f8f8cSSatish Balay        MatZeroEntries_MPISBAIJ,
1455d519adbfSMatthew Knepley /*24*/ 0,
1456a30f8f8cSSatish Balay        0,
1457a30f8f8cSSatish Balay        0,
1458a30f8f8cSSatish Balay        0,
1459a30f8f8cSSatish Balay        0,
1460d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPISBAIJ,
1461b5df2d14SHong Zhang        0,
1462a30f8f8cSSatish Balay        0,
1463a30f8f8cSSatish Balay        0,
1464a30f8f8cSSatish Balay        0,
1465d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPISBAIJ,
1466a30f8f8cSSatish Balay        0,
1467a30f8f8cSSatish Balay        0,
1468a30f8f8cSSatish Balay        0,
1469a30f8f8cSSatish Balay        0,
1470d519adbfSMatthew Knepley /*39*/ MatAXPY_MPISBAIJ,
1471a5e6ed63SBarry Smith        MatGetSubMatrices_MPISBAIJ,
1472d94109b8SHong Zhang        MatIncreaseOverlap_MPISBAIJ,
1473a30f8f8cSSatish Balay        MatGetValues_MPISBAIJ,
14743c896bc6SHong Zhang        MatCopy_MPISBAIJ,
1475d519adbfSMatthew Knepley /*44*/ 0,
1476a30f8f8cSSatish Balay        MatScale_MPISBAIJ,
1477a30f8f8cSSatish Balay        0,
1478a30f8f8cSSatish Balay        0,
1479a30f8f8cSSatish Balay        0,
14806363de48SJed Brown /*49*/ MatSetBlockSize_MPISBAIJ,
1481a30f8f8cSSatish Balay        0,
1482a30f8f8cSSatish Balay        0,
1483a30f8f8cSSatish Balay        0,
1484a30f8f8cSSatish Balay        0,
1485d519adbfSMatthew Knepley /*54*/ 0,
1486a30f8f8cSSatish Balay        0,
1487a30f8f8cSSatish Balay        MatSetUnfactored_MPISBAIJ,
1488a30f8f8cSSatish Balay        0,
1489a30f8f8cSSatish Balay        MatSetValuesBlocked_MPISBAIJ,
1490d519adbfSMatthew Knepley /*59*/ 0,
1491a30f8f8cSSatish Balay        0,
1492a30f8f8cSSatish Balay        0,
1493357abbc8SBarry Smith        0,
149424d5174aSHong Zhang        0,
1495d519adbfSMatthew Knepley /*64*/ 0,
149624d5174aSHong Zhang        0,
149724d5174aSHong Zhang        0,
149824d5174aSHong Zhang        0,
149924d5174aSHong Zhang        0,
1500d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPISBAIJ,
150124d5174aSHong Zhang        0,
150297304618SKris Buschelman        0,
150397304618SKris Buschelman        0,
150497304618SKris Buschelman        0,
1505d519adbfSMatthew Knepley /*74*/ 0,
150697304618SKris Buschelman        0,
150797304618SKris Buschelman        0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
1510d519adbfSMatthew Knepley /*79*/ 0,
151197304618SKris Buschelman        0,
151297304618SKris Buschelman        0,
151397304618SKris Buschelman        0,
1514865e5f61SKris Buschelman        MatLoad_MPISBAIJ,
1515d519adbfSMatthew Knepley /*84*/ 0,
1516865e5f61SKris Buschelman        0,
1517865e5f61SKris Buschelman        0,
1518865e5f61SKris Buschelman        0,
1519865e5f61SKris Buschelman        0,
1520d519adbfSMatthew Knepley /*89*/ 0,
1521865e5f61SKris Buschelman        0,
1522865e5f61SKris Buschelman        0,
1523865e5f61SKris Buschelman        0,
1524865e5f61SKris Buschelman        0,
1525d519adbfSMatthew Knepley /*94*/ 0,
1526865e5f61SKris Buschelman        0,
1527865e5f61SKris Buschelman        0,
152899cafbc1SBarry Smith        0,
152999cafbc1SBarry Smith        0,
1530d519adbfSMatthew Knepley /*99*/ 0,
153199cafbc1SBarry Smith        0,
153299cafbc1SBarry Smith        0,
153399cafbc1SBarry Smith        0,
153499cafbc1SBarry Smith        0,
1535d519adbfSMatthew Knepley /*104*/0,
153699cafbc1SBarry Smith        MatRealPart_MPISBAIJ,
1537d0d4cfc2SHong Zhang        MatImaginaryPart_MPISBAIJ,
1538d0d4cfc2SHong Zhang        MatGetRowUpperTriangular_MPISBAIJ,
1539d0d4cfc2SHong Zhang        MatRestoreRowUpperTriangular_MPISBAIJ
154099cafbc1SBarry Smith };
1541a30f8f8cSSatish Balay 
1542a30f8f8cSSatish Balay 
1543a30f8f8cSSatish Balay EXTERN_C_BEGIN
15444a2ae208SSatish Balay #undef __FUNCT__
15454a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPISBAIJ"
1546be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
1547a30f8f8cSSatish Balay {
1548a30f8f8cSSatish Balay   PetscFunctionBegin;
1549a30f8f8cSSatish Balay   *a      = ((Mat_MPISBAIJ *)A->data)->A;
1550a30f8f8cSSatish Balay   *iscopy = PETSC_FALSE;
1551a30f8f8cSSatish Balay   PetscFunctionReturn(0);
1552a30f8f8cSSatish Balay }
1553a30f8f8cSSatish Balay EXTERN_C_END
1554a30f8f8cSSatish Balay 
1555273d9f13SBarry Smith EXTERN_C_BEGIN
15564a2ae208SSatish Balay #undef __FUNCT__
1557a23d5eceSKris Buschelman #define __FUNCT__ "MatMPISBAIJSetPreallocation_MPISBAIJ"
1558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
1559a23d5eceSKris Buschelman {
1560a23d5eceSKris Buschelman   Mat_MPISBAIJ   *b;
1561dfbe8321SBarry Smith   PetscErrorCode ierr;
1562db4efbfdSBarry Smith   PetscInt       i,mbs,Mbs,newbs = PetscAbs(bs);
1563a23d5eceSKris Buschelman 
1564a23d5eceSKris Buschelman   PetscFunctionBegin;
1565db4efbfdSBarry Smith   if (bs < 0){
15667adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPISBAIJ matrix","Mat");CHKERRQ(ierr);
1567db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
15688c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
1569db4efbfdSBarry Smith     bs   = PetscAbs(bs);
1570db4efbfdSBarry Smith   }
1571e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
1572db4efbfdSBarry Smith   bs = newbs;
1573a23d5eceSKris Buschelman 
1574a23d5eceSKris Buschelman   if (d_nz == PETSC_DECIDE || d_nz == PETSC_DEFAULT) d_nz = 3;
1575a23d5eceSKris Buschelman   if (o_nz == PETSC_DECIDE || o_nz == PETSC_DEFAULT) o_nz = 1;
1576e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
1577e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
1578899cda47SBarry Smith 
1579d0f46423SBarry Smith   B->rmap->bs = B->cmap->bs = bs;
158026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
158126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1582899cda47SBarry Smith 
1583a23d5eceSKris Buschelman   if (d_nnz) {
1584d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1585e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
1586a23d5eceSKris Buschelman     }
1587a23d5eceSKris Buschelman   }
1588a23d5eceSKris Buschelman   if (o_nnz) {
1589d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
1590e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
1591a23d5eceSKris Buschelman     }
1592a23d5eceSKris Buschelman   }
1593a23d5eceSKris Buschelman 
1594a23d5eceSKris Buschelman   b   = (Mat_MPISBAIJ*)B->data;
1595d0f46423SBarry Smith   mbs = B->rmap->n/bs;
1596d0f46423SBarry Smith   Mbs = B->rmap->N/bs;
1597d0f46423SBarry Smith   if (mbs*bs != B->rmap->n) {
1598e32f2f54SBarry Smith     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"No of local rows %D must be divisible by blocksize %D",B->rmap->N,bs);
1599a23d5eceSKris Buschelman   }
1600a23d5eceSKris Buschelman 
1601d0f46423SBarry Smith   B->rmap->bs  = bs;
1602a23d5eceSKris Buschelman   b->bs2 = bs*bs;
1603a23d5eceSKris Buschelman   b->mbs = mbs;
1604a23d5eceSKris Buschelman   b->nbs = mbs;
1605a23d5eceSKris Buschelman   b->Mbs = Mbs;
1606a23d5eceSKris Buschelman   b->Nbs = Mbs;
1607a23d5eceSKris Buschelman 
1608a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
1609d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
1610a23d5eceSKris Buschelman   }
1611d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
1612d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
1613a23d5eceSKris Buschelman 
1614d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
1615d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
1616a23d5eceSKris Buschelman 
1617526dfc15SBarry Smith   if (!B->preallocated) {
1618f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1619d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
16209c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQSBAIJ);CHKERRQ(ierr);
162152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
1622f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1623d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
16244aea0f9eSHong Zhang     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
162552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
162615bb146dSJed Brown     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
1627526dfc15SBarry Smith   }
1628a23d5eceSKris Buschelman 
1629526dfc15SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
1630526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
1631526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
1632a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1633a23d5eceSKris Buschelman }
1634a23d5eceSKris Buschelman EXTERN_C_END
1635a23d5eceSKris Buschelman 
16365c9eb25fSBarry Smith EXTERN_C_BEGIN
1637611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1638bccb9932SShri Abhyankar extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_sbaij_mumps(Mat,MatFactorType,Mat*);
1639611f576cSBarry Smith #endif
1640611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
16415c9eb25fSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_mpisbaij_spooles(Mat,MatFactorType,Mat*);
1642611f576cSBarry Smith #endif
1643b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1644b5e56a35SBarry Smith extern PetscErrorCode MatGetFactor_mpisbaij_pastix(Mat,MatFactorType,Mat*);
1645b5e56a35SBarry Smith #endif
16465c9eb25fSBarry Smith EXTERN_C_END
16475c9eb25fSBarry Smith 
16480bad9183SKris Buschelman /*MC
1649fafad747SKris Buschelman    MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
16500bad9183SKris Buschelman    based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
16510bad9183SKris Buschelman 
16520bad9183SKris Buschelman    Options Database Keys:
16530bad9183SKris Buschelman . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to MatSetFromOptions()
16540bad9183SKris Buschelman 
16550bad9183SKris Buschelman   Level: beginner
16560bad9183SKris Buschelman 
16570bad9183SKris Buschelman .seealso: MatCreateMPISBAIJ
16580bad9183SKris Buschelman M*/
16590bad9183SKris Buschelman 
1660a23d5eceSKris Buschelman EXTERN_C_BEGIN
1661a23d5eceSKris Buschelman #undef __FUNCT__
16624a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPISBAIJ"
1663be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPISBAIJ(Mat B)
1664b5df2d14SHong Zhang {
1665b5df2d14SHong Zhang   Mat_MPISBAIJ   *b;
1666dfbe8321SBarry Smith   PetscErrorCode ierr;
1667b5df2d14SHong Zhang   PetscTruth     flg;
1668b5df2d14SHong Zhang 
1669b5df2d14SHong Zhang   PetscFunctionBegin;
1670b5df2d14SHong Zhang 
167138f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_MPISBAIJ,&b);CHKERRQ(ierr);
1672b0a32e0cSBarry Smith   B->data = (void*)b;
1673b5df2d14SHong Zhang   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1674b5df2d14SHong Zhang 
1675b5df2d14SHong Zhang   B->ops->destroy    = MatDestroy_MPISBAIJ;
1676b5df2d14SHong Zhang   B->ops->view       = MatView_MPISBAIJ;
1677b5df2d14SHong Zhang   B->mapping         = 0;
1678b5df2d14SHong Zhang   B->assembled       = PETSC_FALSE;
1679b5df2d14SHong Zhang 
1680b5df2d14SHong Zhang   B->insertmode = NOT_SET_VALUES;
16817adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
16827adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
1683b5df2d14SHong Zhang 
1684b5df2d14SHong Zhang   /* build local table of row and column ownerships */
1685899cda47SBarry Smith   ierr  = PetscMalloc((b->size+2)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
1686b5df2d14SHong Zhang 
1687b5df2d14SHong Zhang   /* build cache for off array entries formed */
16887adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
1689b5df2d14SHong Zhang   b->donotstash  = PETSC_FALSE;
1690b5df2d14SHong Zhang   b->colmap      = PETSC_NULL;
1691b5df2d14SHong Zhang   b->garray      = PETSC_NULL;
1692b5df2d14SHong Zhang   b->roworiented = PETSC_TRUE;
1693b5df2d14SHong Zhang 
1694b5df2d14SHong Zhang   /* stuff used in block assembly */
1695b5df2d14SHong Zhang   b->barray       = 0;
1696b5df2d14SHong Zhang 
1697b5df2d14SHong Zhang   /* stuff used for matrix vector multiply */
1698b5df2d14SHong Zhang   b->lvec         = 0;
1699b5df2d14SHong Zhang   b->Mvctx        = 0;
170040781036SHong Zhang   b->slvec0       = 0;
170140781036SHong Zhang   b->slvec0b      = 0;
170240781036SHong Zhang   b->slvec1       = 0;
170340781036SHong Zhang   b->slvec1a      = 0;
170440781036SHong Zhang   b->slvec1b      = 0;
170540781036SHong Zhang   b->sMvctx       = 0;
1706b5df2d14SHong Zhang 
1707b5df2d14SHong Zhang   /* stuff for MatGetRow() */
1708b5df2d14SHong Zhang   b->rowindices   = 0;
1709b5df2d14SHong Zhang   b->rowvalues    = 0;
1710b5df2d14SHong Zhang   b->getrowactive = PETSC_FALSE;
1711b5df2d14SHong Zhang 
1712b5df2d14SHong Zhang   /* hash table stuff */
1713b5df2d14SHong Zhang   b->ht           = 0;
1714b5df2d14SHong Zhang   b->hd           = 0;
1715b5df2d14SHong Zhang   b->ht_size      = 0;
1716b5df2d14SHong Zhang   b->ht_flag      = PETSC_FALSE;
1717b5df2d14SHong Zhang   b->ht_fact      = 0;
1718b5df2d14SHong Zhang   b->ht_total_ct  = 0;
1719b5df2d14SHong Zhang   b->ht_insert_ct = 0;
1720b5df2d14SHong Zhang 
172159ffdab8SBarry Smith   b->in_loc       = 0;
172259ffdab8SBarry Smith   b->v_loc        = 0;
172359ffdab8SBarry Smith   b->n_loc        = 0;
17247adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 1","Mat");CHKERRQ(ierr);
17258c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
1726b5df2d14SHong Zhang     if (flg) {
1727f6275e2eSBarry Smith       PetscReal fact = 1.39;
17284e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
17298c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
1730b5df2d14SHong Zhang       if (fact <= 1.0) fact = 1.39;
1731b5df2d14SHong Zhang       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
17321e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
1733b5df2d14SHong Zhang     }
17348c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
17358c07d4e3SBarry Smith 
1736b5e56a35SBarry Smith #if defined(PETSC_HAVE_PASTIX)
1737ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_pastix_C",
1738b5e56a35SBarry Smith 					   "MatGetFactor_mpisbaij_pastix",
1739b5e56a35SBarry Smith 					   MatGetFactor_mpisbaij_pastix);CHKERRQ(ierr);
1740b5e56a35SBarry Smith #endif
1741611f576cSBarry Smith #if defined(PETSC_HAVE_MUMPS)
1742ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C",
1743bccb9932SShri Abhyankar                                      "MatGetFactor_sbaij_mumps",
1744bccb9932SShri Abhyankar                                      MatGetFactor_sbaij_mumps);CHKERRQ(ierr);
1745611f576cSBarry Smith #endif
1746611f576cSBarry Smith #if defined(PETSC_HAVE_SPOOLES)
1747ec1065edSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_spooles_C",
17485c9eb25fSBarry Smith                                      "MatGetFactor_mpisbaij_spooles",
17495c9eb25fSBarry Smith                                      MatGetFactor_mpisbaij_spooles);CHKERRQ(ierr);
1750611f576cSBarry Smith #endif
1751b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1752b5df2d14SHong Zhang                                      "MatStoreValues_MPISBAIJ",
1753b5df2d14SHong Zhang                                      MatStoreValues_MPISBAIJ);CHKERRQ(ierr);
1754b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1755b5df2d14SHong Zhang                                      "MatRetrieveValues_MPISBAIJ",
1756b5df2d14SHong Zhang                                      MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr);
1757b5df2d14SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
1758b5df2d14SHong Zhang                                      "MatGetDiagonalBlock_MPISBAIJ",
1759b5df2d14SHong Zhang                                      MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr);
1760a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPISBAIJSetPreallocation_C",
1761a23d5eceSKris Buschelman                                      "MatMPISBAIJSetPreallocation_MPISBAIJ",
1762a23d5eceSKris Buschelman                                      MatMPISBAIJSetPreallocation_MPISBAIJ);CHKERRQ(ierr);
176323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
176423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
176523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
176623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
176717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISBAIJ);CHKERRQ(ierr);
1768b5df2d14SHong Zhang   PetscFunctionReturn(0);
1769b5df2d14SHong Zhang }
1770273d9f13SBarry Smith EXTERN_C_END
1771b5df2d14SHong Zhang 
1772209238afSKris Buschelman /*MC
1773002d173eSKris Buschelman    MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
1774209238afSKris Buschelman 
1775209238afSKris Buschelman    This matrix type is identical to MATSEQSBAIJ when constructed with a single process communicator,
1776209238afSKris Buschelman    and MATMPISBAIJ otherwise.
1777209238afSKris Buschelman 
1778209238afSKris Buschelman    Options Database Keys:
1779209238afSKris Buschelman . -mat_type sbaij - sets the matrix type to "sbaij" during a call to MatSetFromOptions()
1780209238afSKris Buschelman 
1781209238afSKris Buschelman   Level: beginner
1782209238afSKris Buschelman 
1783209238afSKris Buschelman .seealso: MatCreateMPISBAIJ,MATSEQSBAIJ,MATMPISBAIJ
1784209238afSKris Buschelman M*/
1785209238afSKris Buschelman 
1786209238afSKris Buschelman EXTERN_C_BEGIN
1787209238afSKris Buschelman #undef __FUNCT__
1788209238afSKris Buschelman #define __FUNCT__ "MatCreate_SBAIJ"
1789be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SBAIJ(Mat A)
1790dfbe8321SBarry Smith {
17916849ba73SBarry Smith   PetscErrorCode ierr;
17921302d50aSBarry Smith   PetscMPIInt    size;
1793209238afSKris Buschelman 
1794209238afSKris Buschelman   PetscFunctionBegin;
17957adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1796209238afSKris Buschelman   if (size == 1) {
1797209238afSKris Buschelman     ierr = MatSetType(A,MATSEQSBAIJ);CHKERRQ(ierr);
1798209238afSKris Buschelman   } else {
1799209238afSKris Buschelman     ierr = MatSetType(A,MATMPISBAIJ);CHKERRQ(ierr);
1800209238afSKris Buschelman   }
1801209238afSKris Buschelman   PetscFunctionReturn(0);
1802209238afSKris Buschelman }
1803209238afSKris Buschelman EXTERN_C_END
1804209238afSKris Buschelman 
18054a2ae208SSatish Balay #undef __FUNCT__
18064a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetPreallocation"
1807b5df2d14SHong Zhang /*@C
1808b5df2d14SHong Zhang    MatMPISBAIJSetPreallocation - For good matrix assembly performance
1809b5df2d14SHong Zhang    the user should preallocate the matrix storage by setting the parameters
1810b5df2d14SHong Zhang    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1811b5df2d14SHong Zhang    performance can be increased by more than a factor of 50.
1812b5df2d14SHong Zhang 
1813b5df2d14SHong Zhang    Collective on Mat
1814b5df2d14SHong Zhang 
1815b5df2d14SHong Zhang    Input Parameters:
1816b5df2d14SHong Zhang +  A - the matrix
1817b5df2d14SHong Zhang .  bs   - size of blockk
1818b5df2d14SHong Zhang .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1819b5df2d14SHong Zhang            submatrix  (same for all local rows)
1820b5df2d14SHong Zhang .  d_nnz - array containing the number of block nonzeros in the various block rows
18216d10fdaeSSatish Balay            in the upper triangular and diagonal part of the in diagonal portion of the local
18226d10fdaeSSatish Balay            (possibly different for each block row) or PETSC_NULL.  You must leave room
18236d10fdaeSSatish Balay            for the diagonal entry even if it is zero.
1824b5df2d14SHong Zhang .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1825b5df2d14SHong Zhang            submatrix (same for all local rows).
1826b5df2d14SHong Zhang -  o_nnz - array containing the number of nonzeros in the various block rows of the
1827b5df2d14SHong Zhang            off-diagonal portion of the local submatrix (possibly different for
1828b5df2d14SHong Zhang            each block row) or PETSC_NULL.
1829b5df2d14SHong Zhang 
1830b5df2d14SHong Zhang 
1831b5df2d14SHong Zhang    Options Database Keys:
1832b5df2d14SHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1833b5df2d14SHong Zhang                      block calculations (much slower)
1834b5df2d14SHong Zhang .   -mat_block_size - size of the blocks to use
1835b5df2d14SHong Zhang 
1836b5df2d14SHong Zhang    Notes:
1837b5df2d14SHong Zhang 
1838b5df2d14SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1839b5df2d14SHong Zhang    than it must be used on all processors that share the object for that argument.
1840b5df2d14SHong Zhang 
184149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
184249a6f317SBarry Smith 
1843b5df2d14SHong Zhang    Storage Information:
1844b5df2d14SHong Zhang    For a square global matrix we define each processor's diagonal portion
1845b5df2d14SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1846b5df2d14SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1847b5df2d14SHong Zhang    local matrix (a rectangular submatrix).
1848b5df2d14SHong Zhang 
1849b5df2d14SHong Zhang    The user can specify preallocated storage for the diagonal part of
1850b5df2d14SHong Zhang    the local submatrix with either d_nz or d_nnz (not both).  Set
1851b5df2d14SHong Zhang    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1852b5df2d14SHong Zhang    memory allocation.  Likewise, specify preallocated storage for the
1853b5df2d14SHong Zhang    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1854b5df2d14SHong Zhang 
1855aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1856aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1857aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1858aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1859aa95bbe8SBarry Smith 
1860b5df2d14SHong Zhang    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1861b5df2d14SHong Zhang    the figure below we depict these three local rows and all columns (0-11).
1862b5df2d14SHong Zhang 
1863b5df2d14SHong Zhang .vb
1864b5df2d14SHong Zhang            0 1 2 3 4 5 6 7 8 9 10 11
1865b5df2d14SHong Zhang           -------------------
1866b5df2d14SHong Zhang    row 3  |  o o o d d d o o o o o o
1867b5df2d14SHong Zhang    row 4  |  o o o d d d o o o o o o
1868b5df2d14SHong Zhang    row 5  |  o o o d d d o o o o o o
1869b5df2d14SHong Zhang           -------------------
1870b5df2d14SHong Zhang .ve
1871b5df2d14SHong Zhang 
1872b5df2d14SHong Zhang    Thus, any entries in the d locations are stored in the d (diagonal)
1873b5df2d14SHong Zhang    submatrix, and any entries in the o locations are stored in the
18746d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
18756d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1876b5df2d14SHong Zhang 
18776d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
18786d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1879b5df2d14SHong Zhang    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1880b5df2d14SHong Zhang    In general, for PDE problems in which most nonzeros are near the diagonal,
1881b5df2d14SHong Zhang    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1882b5df2d14SHong Zhang    or you will get TERRIBLE performance; see the users' manual chapter on
1883b5df2d14SHong Zhang    matrices.
1884b5df2d14SHong Zhang 
1885b5df2d14SHong Zhang    Level: intermediate
1886b5df2d14SHong Zhang 
1887b5df2d14SHong Zhang .keywords: matrix, block, aij, compressed row, sparse, parallel
1888b5df2d14SHong Zhang 
1889b5df2d14SHong Zhang .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
1890b5df2d14SHong Zhang @*/
1891be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1892b5df2d14SHong Zhang {
18931302d50aSBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1894b5df2d14SHong Zhang 
1895b5df2d14SHong Zhang   PetscFunctionBegin;
1896a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPISBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1897a23d5eceSKris Buschelman   if (f) {
1898a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
1899b5df2d14SHong Zhang   }
1900b5df2d14SHong Zhang   PetscFunctionReturn(0);
1901b5df2d14SHong Zhang }
1902b5df2d14SHong Zhang 
19034a2ae208SSatish Balay #undef __FUNCT__
19044a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPISBAIJ"
1905a30f8f8cSSatish Balay /*@C
1906a30f8f8cSSatish Balay    MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format
1907a30f8f8cSSatish Balay    (block compressed row).  For good matrix assembly performance
1908a30f8f8cSSatish Balay    the user should preallocate the matrix storage by setting the parameters
1909a30f8f8cSSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1910a30f8f8cSSatish Balay    performance can be increased by more than a factor of 50.
1911a30f8f8cSSatish Balay 
1912a30f8f8cSSatish Balay    Collective on MPI_Comm
1913a30f8f8cSSatish Balay 
1914a30f8f8cSSatish Balay    Input Parameters:
1915a30f8f8cSSatish Balay +  comm - MPI communicator
1916a30f8f8cSSatish Balay .  bs   - size of blockk
1917a30f8f8cSSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1918a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1919a30f8f8cSSatish Balay            y vector for the matrix-vector product y = Ax.
1920a30f8f8cSSatish Balay .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1921a30f8f8cSSatish Balay            This value should be the same as the local size used in creating the
1922a30f8f8cSSatish Balay            x vector for the matrix-vector product y = Ax.
1923a30f8f8cSSatish Balay .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1924a30f8f8cSSatish Balay .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1925a30f8f8cSSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
1926a30f8f8cSSatish Balay            submatrix  (same for all local rows)
1927a30f8f8cSSatish Balay .  d_nnz - array containing the number of block nonzeros in the various block rows
19286d10fdaeSSatish Balay            in the upper triangular portion of the in diagonal portion of the local
19296d10fdaeSSatish Balay            (possibly different for each block block row) or PETSC_NULL.
19306d10fdaeSSatish Balay            You must leave room for the diagonal entry even if it is zero.
1931a30f8f8cSSatish Balay .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
1932a30f8f8cSSatish Balay            submatrix (same for all local rows).
1933a30f8f8cSSatish Balay -  o_nnz - array containing the number of nonzeros in the various block rows of the
1934a30f8f8cSSatish Balay            off-diagonal portion of the local submatrix (possibly different for
1935a30f8f8cSSatish Balay            each block row) or PETSC_NULL.
1936a30f8f8cSSatish Balay 
1937a30f8f8cSSatish Balay    Output Parameter:
1938a30f8f8cSSatish Balay .  A - the matrix
1939a30f8f8cSSatish Balay 
1940a30f8f8cSSatish Balay    Options Database Keys:
1941a30f8f8cSSatish Balay .   -mat_no_unroll - uses code that does not unroll the loops in the
1942a30f8f8cSSatish Balay                      block calculations (much slower)
1943a30f8f8cSSatish Balay .   -mat_block_size - size of the blocks to use
1944a30f8f8cSSatish Balay .   -mat_mpi - use the parallel matrix data structures even on one processor
1945a30f8f8cSSatish Balay                (defaults to using SeqBAIJ format on one processor)
1946a30f8f8cSSatish Balay 
1947175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1948ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
1949175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
1950175b88e8SBarry Smith 
1951a30f8f8cSSatish Balay    Notes:
1952d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
19536d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
1954d1be2dadSMatthew Knepley 
1955a30f8f8cSSatish Balay    The user MUST specify either the local or global matrix dimensions
1956a30f8f8cSSatish Balay    (possibly both).
1957a30f8f8cSSatish Balay 
1958a30f8f8cSSatish Balay    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1959a30f8f8cSSatish Balay    than it must be used on all processors that share the object for that argument.
1960a30f8f8cSSatish Balay 
196149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
196249a6f317SBarry Smith 
1963a30f8f8cSSatish Balay    Storage Information:
1964a30f8f8cSSatish Balay    For a square global matrix we define each processor's diagonal portion
1965a30f8f8cSSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
1966a30f8f8cSSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
1967a30f8f8cSSatish Balay    local matrix (a rectangular submatrix).
1968a30f8f8cSSatish Balay 
1969a30f8f8cSSatish Balay    The user can specify preallocated storage for the diagonal part of
1970a30f8f8cSSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
1971a30f8f8cSSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
1972a30f8f8cSSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
1973a30f8f8cSSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1974a30f8f8cSSatish Balay 
1975a30f8f8cSSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
1976a30f8f8cSSatish Balay    the figure below we depict these three local rows and all columns (0-11).
1977a30f8f8cSSatish Balay 
1978a30f8f8cSSatish Balay .vb
1979a30f8f8cSSatish Balay            0 1 2 3 4 5 6 7 8 9 10 11
1980a30f8f8cSSatish Balay           -------------------
1981a30f8f8cSSatish Balay    row 3  |  o o o d d d o o o o o o
1982a30f8f8cSSatish Balay    row 4  |  o o o d d d o o o o o o
1983a30f8f8cSSatish Balay    row 5  |  o o o d d d o o o o o o
1984a30f8f8cSSatish Balay           -------------------
1985a30f8f8cSSatish Balay .ve
1986a30f8f8cSSatish Balay 
1987a30f8f8cSSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
1988a30f8f8cSSatish Balay    submatrix, and any entries in the o locations are stored in the
19896d10fdaeSSatish Balay    o (off-diagonal) submatrix.  Note that the d matrix is stored in
19906d10fdaeSSatish Balay    MatSeqSBAIJ format and the o submatrix in MATSEQBAIJ format.
1991a30f8f8cSSatish Balay 
19926d10fdaeSSatish Balay    Now d_nz should indicate the number of block nonzeros per row in the upper triangular
19936d10fdaeSSatish Balay    plus the diagonal part of the d matrix,
1994a30f8f8cSSatish Balay    and o_nz should indicate the number of block nonzeros per row in the o matrix.
1995a30f8f8cSSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
1996a30f8f8cSSatish Balay    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
1997a30f8f8cSSatish Balay    or you will get TERRIBLE performance; see the users' manual chapter on
1998a30f8f8cSSatish Balay    matrices.
1999a30f8f8cSSatish Balay 
2000a30f8f8cSSatish Balay    Level: intermediate
2001a30f8f8cSSatish Balay 
2002a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel
2003a30f8f8cSSatish Balay 
2004a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2005a30f8f8cSSatish Balay @*/
2006a30f8f8cSSatish Balay 
2007be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPISBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
2008a30f8f8cSSatish Balay {
20096849ba73SBarry Smith   PetscErrorCode ierr;
20101302d50aSBarry Smith   PetscMPIInt    size;
2011a30f8f8cSSatish Balay 
2012a30f8f8cSSatish Balay   PetscFunctionBegin;
2013f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2014f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2015273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2016273d9f13SBarry Smith   if (size > 1) {
2017b5df2d14SHong Zhang     ierr = MatSetType(*A,MATMPISBAIJ);CHKERRQ(ierr);
2018b5df2d14SHong Zhang     ierr = MatMPISBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2019273d9f13SBarry Smith   } else {
2020273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2021273d9f13SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2022273d9f13SBarry Smith   }
2023a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2024a30f8f8cSSatish Balay }
2025a30f8f8cSSatish Balay 
2026a30f8f8cSSatish Balay 
20274a2ae208SSatish Balay #undef __FUNCT__
20284a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPISBAIJ"
20296849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
2030a30f8f8cSSatish Balay {
2031a30f8f8cSSatish Balay   Mat            mat;
2032a30f8f8cSSatish Balay   Mat_MPISBAIJ   *a,*oldmat = (Mat_MPISBAIJ*)matin->data;
2033dfbe8321SBarry Smith   PetscErrorCode ierr;
2034d0f46423SBarry Smith   PetscInt       len=0,nt,bs=matin->rmap->bs,mbs=oldmat->mbs;
2035387bc808SHong Zhang   PetscScalar    *array;
2036a30f8f8cSSatish Balay 
2037a30f8f8cSSatish Balay   PetscFunctionBegin;
2038a30f8f8cSSatish Balay   *newmat       = 0;
20397adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2040d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
20417adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
20421d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
204326283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
204426283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
2045e1b6402fSHong Zhang 
2046d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
2047273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
204882327fa8SHong Zhang   mat->assembled    = PETSC_TRUE;
20497fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
20507fff6886SHong Zhang 
2051b5df2d14SHong Zhang   a = (Mat_MPISBAIJ*)mat->data;
2052a30f8f8cSSatish Balay   a->bs2   = oldmat->bs2;
2053a30f8f8cSSatish Balay   a->mbs   = oldmat->mbs;
2054a30f8f8cSSatish Balay   a->nbs   = oldmat->nbs;
2055a30f8f8cSSatish Balay   a->Mbs   = oldmat->Mbs;
2056a30f8f8cSSatish Balay   a->Nbs   = oldmat->Nbs;
2057a30f8f8cSSatish Balay 
2058899cda47SBarry Smith 
2059a30f8f8cSSatish Balay   a->size         = oldmat->size;
2060a30f8f8cSSatish Balay   a->rank         = oldmat->rank;
2061a30f8f8cSSatish Balay   a->donotstash   = oldmat->donotstash;
2062a30f8f8cSSatish Balay   a->roworiented  = oldmat->roworiented;
2063a30f8f8cSSatish Balay   a->rowindices   = 0;
2064a30f8f8cSSatish Balay   a->rowvalues    = 0;
2065a30f8f8cSSatish Balay   a->getrowactive = PETSC_FALSE;
2066a30f8f8cSSatish Balay   a->barray       = 0;
2067899cda47SBarry Smith   a->rstartbs    = oldmat->rstartbs;
2068899cda47SBarry Smith   a->rendbs      = oldmat->rendbs;
2069899cda47SBarry Smith   a->cstartbs    = oldmat->cstartbs;
2070899cda47SBarry Smith   a->cendbs      = oldmat->cendbs;
2071a30f8f8cSSatish Balay 
2072a30f8f8cSSatish Balay   /* hash table stuff */
2073a30f8f8cSSatish Balay   a->ht           = 0;
2074a30f8f8cSSatish Balay   a->hd           = 0;
2075a30f8f8cSSatish Balay   a->ht_size      = 0;
2076a30f8f8cSSatish Balay   a->ht_flag      = oldmat->ht_flag;
2077a30f8f8cSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2078a30f8f8cSSatish Balay   a->ht_total_ct  = 0;
2079a30f8f8cSSatish Balay   a->ht_insert_ct = 0;
2080a30f8f8cSSatish Balay 
2081899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
2082a30f8f8cSSatish Balay   if (oldmat->colmap) {
2083a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE)
2084a30f8f8cSSatish Balay     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
2085a30f8f8cSSatish Balay #else
20861302d50aSBarry Smith     ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
208752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
20881302d50aSBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2089a30f8f8cSSatish Balay #endif
2090a30f8f8cSSatish Balay   } else a->colmap = 0;
2091387bc808SHong Zhang 
2092a30f8f8cSSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
20931302d50aSBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
209452e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
20951302d50aSBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
2096a30f8f8cSSatish Balay   } else a->garray = 0;
2097a30f8f8cSSatish Balay 
2098533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
2099a30f8f8cSSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
210052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
2101a30f8f8cSSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
210252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
210382327fa8SHong Zhang 
210482327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec0,&a->slvec0);CHKERRQ(ierr);
210552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
210682327fa8SHong Zhang   ierr =  VecDuplicate(oldmat->slvec1,&a->slvec1);CHKERRQ(ierr);
210752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
2108387bc808SHong Zhang 
2109387bc808SHong Zhang   ierr = VecGetLocalSize(a->slvec1,&nt);CHKERRQ(ierr);
21101ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec1,&array);CHKERRQ(ierr);
2111387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,bs*mbs,array,&a->slvec1a);CHKERRQ(ierr);
2112387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec1b);CHKERRQ(ierr);
21131ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec1,&array);CHKERRQ(ierr);
21141ebc52fbSHong Zhang   ierr = VecGetArray(a->slvec0,&array);CHKERRQ(ierr);
2115387bc808SHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,nt-bs*mbs,array+bs*mbs,&a->slvec0b);CHKERRQ(ierr);
21161ebc52fbSHong Zhang   ierr = VecRestoreArray(a->slvec0,&array);CHKERRQ(ierr);
211752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0);CHKERRQ(ierr);
211852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1);CHKERRQ(ierr);
211952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec0b);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1a);CHKERRQ(ierr);
212152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->slvec1b);CHKERRQ(ierr);
2122387bc808SHong Zhang 
2123387bc808SHong Zhang   /* ierr =  VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
2124387bc808SHong Zhang   ierr = PetscObjectReference((PetscObject)oldmat->sMvctx);CHKERRQ(ierr);
2125387bc808SHong Zhang   a->sMvctx = oldmat->sMvctx;
212652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->sMvctx);CHKERRQ(ierr);
212782327fa8SHong Zhang 
2128a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
212952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
2130a30f8f8cSSatish Balay   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
213152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
21327adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
2133a30f8f8cSSatish Balay   *newmat = mat;
2134a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2135a30f8f8cSSatish Balay }
2136a30f8f8cSSatish Balay 
21374a2ae208SSatish Balay #undef __FUNCT__
21384a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPISBAIJ"
2139a313700dSBarry Smith PetscErrorCode MatLoad_MPISBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
2140a30f8f8cSSatish Balay {
2141a30f8f8cSSatish Balay   Mat            A;
21426849ba73SBarry Smith   PetscErrorCode ierr;
214313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
214487828ca2SBarry Smith   PetscScalar    *vals,*buf;
2145a30f8f8cSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
2146a30f8f8cSSatish Balay   MPI_Status     status;
2147e44c0bd4SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*sndcounts = 0,*browners,maxnz,*rowners,*locrowlens,mmbs;
214813f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*cols;
21492fd7e33dSBarry Smith   PetscInt       *procsnz = 0,jj,*mycols,*ibuf;
21501302d50aSBarry Smith   PetscInt       bs=1,Mbs,mbs,extra_rows;
21511302d50aSBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
21521302d50aSBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp;
215313f74950SBarry Smith   int            fd;
2154a30f8f8cSSatish Balay 
2155a30f8f8cSSatish Balay   PetscFunctionBegin;
215677925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPISBAIJ matrix 2","Mat");CHKERRQ(ierr);
21578c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21588c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2159a30f8f8cSSatish Balay 
2160a30f8f8cSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2161a30f8f8cSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2162a30f8f8cSSatish Balay   if (!rank) {
2163b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2164a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2165e32f2f54SBarry Smith     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2166e7e72b3dSBarry Smith     if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPISBAIJ");
2167a30f8f8cSSatish Balay   }
2168a30f8f8cSSatish Balay 
2169a7cc72afSBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
2170a30f8f8cSSatish Balay   M = header[1]; N = header[2];
2171a30f8f8cSSatish Balay 
2172e32f2f54SBarry Smith   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
2173a30f8f8cSSatish Balay 
2174a30f8f8cSSatish Balay   /*
2175a30f8f8cSSatish Balay      This code adds extra rows to make sure the number of rows is
2176a30f8f8cSSatish Balay      divisible by the blocksize
2177a30f8f8cSSatish Balay   */
2178a30f8f8cSSatish Balay   Mbs        = M/bs;
2179a30f8f8cSSatish Balay   extra_rows = bs - M + bs*(Mbs);
2180a30f8f8cSSatish Balay   if (extra_rows == bs) extra_rows = 0;
2181a30f8f8cSSatish Balay   else                  Mbs++;
2182a30f8f8cSSatish Balay   if (extra_rows &&!rank) {
21831e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
2184a30f8f8cSSatish Balay   }
2185a30f8f8cSSatish Balay 
2186a30f8f8cSSatish Balay   /* determine ownership of all rows */
2187a30f8f8cSSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
2188a30f8f8cSSatish Balay   m          = mbs*bs;
218974ed9c26SBarry Smith   ierr       = PetscMalloc2(size+1,PetscMPIInt,&rowners,size+1,PetscMPIInt,&browners);CHKERRQ(ierr);
2190e44c0bd4SBarry Smith   mmbs       = PetscMPIIntCast(mbs);
2191e44c0bd4SBarry Smith   ierr       = MPI_Allgather(&mmbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
2192a30f8f8cSSatish Balay   rowners[0] = 0;
2193a30f8f8cSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2194a30f8f8cSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
2195a30f8f8cSSatish Balay   rstart = rowners[rank];
2196a30f8f8cSSatish Balay   rend   = rowners[rank+1];
2197a30f8f8cSSatish Balay 
2198a30f8f8cSSatish Balay   /* distribute row lengths to all processors */
21992fd7e33dSBarry Smith   ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscMPIInt),&locrowlens);CHKERRQ(ierr);
2200a30f8f8cSSatish Balay   if (!rank) {
22011302d50aSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2202a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
2203a30f8f8cSSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
2204a7cc72afSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
2205a30f8f8cSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2206a7cc72afSBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2207a30f8f8cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2208a30f8f8cSSatish Balay   } else {
2209a7cc72afSBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr);
2210a30f8f8cSSatish Balay   }
2211a30f8f8cSSatish Balay 
22120222edb1SHong Zhang   if (!rank) {   /* procs[0] */
2213a30f8f8cSSatish Balay     /* calculate the number of nonzeros on each processor */
22141302d50aSBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
22151302d50aSBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2216a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2217a30f8f8cSSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
2218a30f8f8cSSatish Balay         procsnz[i] += rowlengths[j];
2219a30f8f8cSSatish Balay       }
2220a30f8f8cSSatish Balay     }
2221a30f8f8cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2222a30f8f8cSSatish Balay 
2223a30f8f8cSSatish Balay     /* determine max buffer needed and allocate it */
2224a30f8f8cSSatish Balay     maxnz = 0;
2225a30f8f8cSSatish Balay     for (i=0; i<size; i++) {
2226a30f8f8cSSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
2227a30f8f8cSSatish Balay     }
22281302d50aSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2229a30f8f8cSSatish Balay 
2230a30f8f8cSSatish Balay     /* read in my part of the matrix column indices  */
2231a30f8f8cSSatish Balay     nz     = procsnz[0];
22321302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2233a30f8f8cSSatish Balay     mycols = ibuf;
2234a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2235a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2236a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2237a30f8f8cSSatish Balay 
2238a30f8f8cSSatish Balay     /* read in every ones (except the last) and ship off */
2239a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2240a30f8f8cSSatish Balay       nz   = procsnz[i];
2241a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2242a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
2243a30f8f8cSSatish Balay     }
2244a30f8f8cSSatish Balay     /* read in the stuff for the last proc */
2245a30f8f8cSSatish Balay     if (size != 1) {
2246a30f8f8cSSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2247a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2248a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2249a7cc72afSBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
2250a30f8f8cSSatish Balay     }
2251a30f8f8cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
22520222edb1SHong Zhang   } else {  /* procs[i], i>0 */
2253a30f8f8cSSatish Balay     /* determine buffer space needed for message */
2254a30f8f8cSSatish Balay     nz = 0;
2255a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2256a30f8f8cSSatish Balay       nz += locrowlens[i];
2257a30f8f8cSSatish Balay     }
22581302d50aSBarry Smith     ierr   = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
2259a30f8f8cSSatish Balay     mycols = ibuf;
2260a30f8f8cSSatish Balay     /* receive message of column indices*/
2261a7cc72afSBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2262a7cc72afSBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
2263e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2264a30f8f8cSSatish Balay   }
2265a30f8f8cSSatish Balay 
2266a30f8f8cSSatish Balay   /* loop over local rows, determining number of off diagonal entries */
226774ed9c26SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
226874ed9c26SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
226974ed9c26SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
227074ed9c26SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
227174ed9c26SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
227274ed9c26SBarry Smith   rowcount = 0;
227374ed9c26SBarry Smith   nzcount  = 0;
2274a30f8f8cSSatish Balay   for (i=0; i<mbs; i++) {
2275a30f8f8cSSatish Balay     dcount  = 0;
2276a30f8f8cSSatish Balay     odcount = 0;
2277a30f8f8cSSatish Balay     for (j=0; j<bs; j++) {
2278a30f8f8cSSatish Balay       kmax = locrowlens[rowcount];
2279a30f8f8cSSatish Balay       for (k=0; k<kmax; k++) {
22800222edb1SHong Zhang         tmp = mycols[nzcount++]/bs; /* block col. index */
2281a30f8f8cSSatish Balay         if (!mask[tmp]) {
2282a30f8f8cSSatish Balay           mask[tmp] = 1;
22830222edb1SHong Zhang           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */
22840222edb1SHong Zhang           else masked1[dcount++] = tmp; /* entry in diag portion */
2285a30f8f8cSSatish Balay         }
2286a30f8f8cSSatish Balay       }
2287a30f8f8cSSatish Balay       rowcount++;
2288a30f8f8cSSatish Balay     }
2289a30f8f8cSSatish Balay 
22900222edb1SHong Zhang     dlens[i]  = dcount;  /* d_nzz[i] */
22910222edb1SHong Zhang     odlens[i] = odcount; /* o_nzz[i] */
2292a30f8f8cSSatish Balay 
2293a30f8f8cSSatish Balay     /* zero out the mask elements we set */
2294a30f8f8cSSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
2295a30f8f8cSSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
2296a30f8f8cSSatish Balay   }
2297a30f8f8cSSatish Balay 
2298a30f8f8cSSatish Balay   /* create our matrix */
2299f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2300f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
230122191285SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr);
230217fa8088SHong Zhang   ierr = MatSetOption(A,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
230322191285SKris Buschelman   ierr = MatMPISBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
2304a30f8f8cSSatish Balay 
2305a30f8f8cSSatish Balay   if (!rank) {
230687828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2307a30f8f8cSSatish Balay     /* read in my part of the matrix numerical values  */
2308a30f8f8cSSatish Balay     nz = procsnz[0];
2309a30f8f8cSSatish Balay     vals = buf;
2310a30f8f8cSSatish Balay     mycols = ibuf;
2311a30f8f8cSSatish Balay     if (size == 1)  nz -= extra_rows;
2312a30f8f8cSSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2313a30f8f8cSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2314a30f8f8cSSatish Balay 
2315a30f8f8cSSatish Balay     /* insert into matrix */
2316a30f8f8cSSatish Balay     jj      = rstart*bs;
2317a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
23187e06b45fSHong Zhang       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2319a30f8f8cSSatish Balay       mycols += locrowlens[i];
2320a30f8f8cSSatish Balay       vals   += locrowlens[i];
2321a30f8f8cSSatish Balay       jj++;
2322a30f8f8cSSatish Balay     }
23237e06b45fSHong Zhang 
2324a30f8f8cSSatish Balay     /* read in other processors (except the last one) and ship out */
2325a30f8f8cSSatish Balay     for (i=1; i<size-1; i++) {
2326a30f8f8cSSatish Balay       nz   = procsnz[i];
2327a30f8f8cSSatish Balay       vals = buf;
2328a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
23297adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2330a30f8f8cSSatish Balay     }
2331a30f8f8cSSatish Balay     /* the last proc */
2332a30f8f8cSSatish Balay     if (size != 1){
2333a30f8f8cSSatish Balay       nz   = procsnz[i] - extra_rows;
2334a30f8f8cSSatish Balay       vals = buf;
2335a30f8f8cSSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2336a30f8f8cSSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
23377adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
2338a30f8f8cSSatish Balay     }
2339a30f8f8cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
23407e06b45fSHong Zhang 
2341a30f8f8cSSatish Balay   } else {
2342a30f8f8cSSatish Balay     /* receive numeric values */
234387828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
2344a30f8f8cSSatish Balay 
2345a30f8f8cSSatish Balay     /* receive message of values*/
2346a30f8f8cSSatish Balay     vals   = buf;
2347a30f8f8cSSatish Balay     mycols = ibuf;
23487adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2349a30f8f8cSSatish Balay     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2350e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
2351a30f8f8cSSatish Balay 
2352a30f8f8cSSatish Balay     /* insert into matrix */
2353a30f8f8cSSatish Balay     jj      = rstart*bs;
2354a30f8f8cSSatish Balay     for (i=0; i<m; i++) {
2355a30f8f8cSSatish Balay       ierr    = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
2356a30f8f8cSSatish Balay       mycols += locrowlens[i];
2357a30f8f8cSSatish Balay       vals   += locrowlens[i];
2358a30f8f8cSSatish Balay       jj++;
2359a30f8f8cSSatish Balay     }
2360a30f8f8cSSatish Balay   }
23617e06b45fSHong Zhang 
2362a30f8f8cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2363a30f8f8cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2364a30f8f8cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
236574ed9c26SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
236674ed9c26SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
236774ed9c26SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
2368a30f8f8cSSatish Balay   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2369a30f8f8cSSatish Balay   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237022191285SKris Buschelman   *newmat = A;
2371a30f8f8cSSatish Balay   PetscFunctionReturn(0);
2372a30f8f8cSSatish Balay }
2373a30f8f8cSSatish Balay 
23744a2ae208SSatish Balay #undef __FUNCT__
23754a2ae208SSatish Balay #define __FUNCT__ "MatMPISBAIJSetHashTableFactor"
2376dcf5cc72SBarry Smith /*XXXXX@
2377a30f8f8cSSatish Balay    MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2378a30f8f8cSSatish Balay 
2379a30f8f8cSSatish Balay    Input Parameters:
2380a30f8f8cSSatish Balay .  mat  - the matrix
2381a30f8f8cSSatish Balay .  fact - factor
2382a30f8f8cSSatish Balay 
2383a30f8f8cSSatish Balay    Collective on Mat
2384a30f8f8cSSatish Balay 
2385a30f8f8cSSatish Balay    Level: advanced
2386a30f8f8cSSatish Balay 
2387a30f8f8cSSatish Balay   Notes:
2388a30f8f8cSSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2389a30f8f8cSSatish Balay 
2390a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT
2391a30f8f8cSSatish Balay 
2392a30f8f8cSSatish Balay .seealso: MatSetOption()
2393dcf5cc72SBarry Smith @XXXXX*/
2394dcf5cc72SBarry Smith 
239524d5174aSHong Zhang 
23964a2ae208SSatish Balay #undef __FUNCT__
2397985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPISBAIJ"
2398985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])
239924d5174aSHong Zhang {
240024d5174aSHong Zhang   Mat_MPISBAIJ   *a = (Mat_MPISBAIJ*)A->data;
2401f4c0e9e4SHong Zhang   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(a->B)->data;
2402ca54ac64SHong Zhang   PetscReal      atmp;
240387828ca2SBarry Smith   PetscReal      *work,*svalues,*rvalues;
2404dfbe8321SBarry Smith   PetscErrorCode ierr;
24051302d50aSBarry Smith   PetscInt       i,bs,mbs,*bi,*bj,brow,j,ncols,krow,kcol,col,row,Mbs,bcol;
24061302d50aSBarry Smith   PetscMPIInt    rank,size;
24071302d50aSBarry Smith   PetscInt       *rowners_bs,dest,count,source;
240887828ca2SBarry Smith   PetscScalar    *va;
24098a1c53f2SBarry Smith   MatScalar      *ba;
2410f4c0e9e4SHong Zhang   MPI_Status     stat;
241124d5174aSHong Zhang 
241224d5174aSHong Zhang   PetscFunctionBegin;
2413e32f2f54SBarry Smith   if (idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Send email to petsc-maint@mcs.anl.gov");
2414985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,PETSC_NULL);CHKERRQ(ierr);
24151ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
2416f4c0e9e4SHong Zhang 
24177adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
24187adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2419f4c0e9e4SHong Zhang 
2420d0f46423SBarry Smith   bs   = A->rmap->bs;
2421f4c0e9e4SHong Zhang   mbs  = a->mbs;
2422f4c0e9e4SHong Zhang   Mbs  = a->Mbs;
2423f4c0e9e4SHong Zhang   ba   = b->a;
2424f4c0e9e4SHong Zhang   bi   = b->i;
2425f4c0e9e4SHong Zhang   bj   = b->j;
2426f4c0e9e4SHong Zhang 
2427f4c0e9e4SHong Zhang   /* find ownerships */
2428d0f46423SBarry Smith   rowners_bs = A->rmap->range;
2429f4c0e9e4SHong Zhang 
2430f4c0e9e4SHong Zhang   /* each proc creates an array to be distributed */
243182502324SSatish Balay   ierr = PetscMalloc(bs*Mbs*sizeof(PetscReal),&work);CHKERRQ(ierr);
2432ca54ac64SHong Zhang   ierr = PetscMemzero(work,bs*Mbs*sizeof(PetscReal));CHKERRQ(ierr);
2433f4c0e9e4SHong Zhang 
2434f4c0e9e4SHong Zhang   /* row_max for B */
2435b8475685SHong Zhang   if (rank != size-1){
2436f4c0e9e4SHong Zhang     for (i=0; i<mbs; i++) {
2437f4c0e9e4SHong Zhang       ncols = bi[1] - bi[0]; bi++;
2438f4c0e9e4SHong Zhang       brow  = bs*i;
2439f4c0e9e4SHong Zhang       for (j=0; j<ncols; j++){
2440f4c0e9e4SHong Zhang         bcol = bs*(*bj);
2441f4c0e9e4SHong Zhang         for (kcol=0; kcol<bs; kcol++){
2442ca54ac64SHong Zhang           col = bcol + kcol;                 /* local col index */
244304d41228SHong Zhang           col += rowners_bs[rank+1];      /* global col index */
2444f4c0e9e4SHong Zhang           for (krow=0; krow<bs; krow++){
2445f4c0e9e4SHong Zhang             atmp = PetscAbsScalar(*ba); ba++;
2446ca54ac64SHong Zhang             row = brow + krow;    /* local row index */
2447ca54ac64SHong Zhang             if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2448f4c0e9e4SHong Zhang             if (work[col] < atmp) work[col] = atmp;
2449f4c0e9e4SHong Zhang           }
2450f4c0e9e4SHong Zhang         }
2451f4c0e9e4SHong Zhang         bj++;
2452f4c0e9e4SHong Zhang       }
2453f4c0e9e4SHong Zhang     }
2454f4c0e9e4SHong Zhang 
2455f4c0e9e4SHong Zhang     /* send values to its owners */
2456f4c0e9e4SHong Zhang     for (dest=rank+1; dest<size; dest++){
2457f4c0e9e4SHong Zhang       svalues = work + rowners_bs[dest];
2458ca54ac64SHong Zhang       count   = rowners_bs[dest+1]-rowners_bs[dest];
24597adad957SLisandro Dalcin       ierr    = MPI_Send(svalues,count,MPIU_REAL,dest,rank,((PetscObject)A)->comm);CHKERRQ(ierr);
2460ca54ac64SHong Zhang     }
2461f4c0e9e4SHong Zhang   }
2462f4c0e9e4SHong Zhang 
2463f4c0e9e4SHong Zhang   /* receive values */
2464ca54ac64SHong Zhang   if (rank){
2465f4c0e9e4SHong Zhang     rvalues = work;
2466ca54ac64SHong Zhang     count   = rowners_bs[rank+1]-rowners_bs[rank];
2467f4c0e9e4SHong Zhang     for (source=0; source<rank; source++){
24687adad957SLisandro Dalcin       ierr = MPI_Recv(rvalues,count,MPIU_REAL,MPI_ANY_SOURCE,MPI_ANY_TAG,((PetscObject)A)->comm,&stat);CHKERRQ(ierr);
2469f4c0e9e4SHong Zhang       /* process values */
2470f4c0e9e4SHong Zhang       for (i=0; i<count; i++){
2471ca54ac64SHong Zhang         if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2472f4c0e9e4SHong Zhang       }
2473f4c0e9e4SHong Zhang     }
2474ca54ac64SHong Zhang   }
2475f4c0e9e4SHong Zhang 
24761ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
2477ac355199SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
247824d5174aSHong Zhang   PetscFunctionReturn(0);
247924d5174aSHong Zhang }
24802798e883SHong Zhang 
24812798e883SHong Zhang #undef __FUNCT__
248241f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ"
248341f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
24842798e883SHong Zhang {
24852798e883SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2486dfbe8321SBarry Smith   PetscErrorCode ierr;
2487d0f46423SBarry Smith   PetscInt       mbs=mat->mbs,bs=matin->rmap->bs;
2488fa22f6d0SBarry Smith   PetscScalar    *x,*b,*ptr,*from;
2489ffe4fb16SHong Zhang   Vec            bb1;
2490ffe4fb16SHong Zhang 
2491ffe4fb16SHong Zhang   PetscFunctionBegin;
2492e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2493e32f2f54SBarry Smith   if (bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2494ffe4fb16SHong Zhang 
2495a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
249641f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2497a2b30743SBarry Smith     PetscFunctionReturn(0);
2498a2b30743SBarry Smith   }
2499a2b30743SBarry Smith 
2500ffe4fb16SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2501ffe4fb16SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
250241f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
2503ffe4fb16SHong Zhang       its--;
2504ffe4fb16SHong Zhang     }
2505ffe4fb16SHong Zhang 
2506ffe4fb16SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2507ffe4fb16SHong Zhang     while (its--){
2508ffe4fb16SHong Zhang 
2509ffe4fb16SHong Zhang       /* lower triangular part: slvec0b = - B^T*xx */
2510ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2511ffe4fb16SHong Zhang 
2512ffe4fb16SHong Zhang       /* copy xx into slvec0a */
25131ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec0,&ptr);CHKERRQ(ierr);
25141ebc52fbSHong Zhang       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2515ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25161ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec0,&ptr);CHKERRQ(ierr);
2517ffe4fb16SHong Zhang 
2518efb30889SBarry Smith       ierr = VecScale(mat->slvec0,-1.0);CHKERRQ(ierr);
2519ffe4fb16SHong Zhang 
2520ffe4fb16SHong Zhang       /* copy bb into slvec1a */
25211ebc52fbSHong Zhang       ierr = VecGetArray(mat->slvec1,&ptr);CHKERRQ(ierr);
25221ebc52fbSHong Zhang       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2523ffe4fb16SHong Zhang       ierr = PetscMemcpy(ptr,b,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
25241ebc52fbSHong Zhang       ierr = VecRestoreArray(mat->slvec1,&ptr);CHKERRQ(ierr);
2525ffe4fb16SHong Zhang 
2526ffe4fb16SHong Zhang       /* set slvec1b = 0 */
2527fa22f6d0SBarry Smith       ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2528ffe4fb16SHong Zhang 
2529ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
25301ebc52fbSHong Zhang       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
25311ebc52fbSHong Zhang       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2532ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2533ffe4fb16SHong Zhang 
2534ffe4fb16SHong Zhang       /* upper triangular part: bb1 = bb1 - B*x */
2535ffe4fb16SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,bb1);CHKERRQ(ierr);
2536ffe4fb16SHong Zhang 
2537ffe4fb16SHong Zhang       /* local diagonal sweep */
253841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
2539ffe4fb16SHong Zhang     }
2540ffe4fb16SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2541fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
254241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2543fa22f6d0SBarry Smith   } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)){
254441f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2545fa22f6d0SBarry Smith   } else if (flag & SOR_EISENSTAT) {
2546fa22f6d0SBarry Smith     Vec               xx1;
2547fa22f6d0SBarry Smith     PetscTruth        hasop;
254820f1ed55SBarry Smith     const PetscScalar *diag;
2549887ee2caSBarry Smith     PetscScalar       *sl,scale = (omega - 2.0)/omega;
255020f1ed55SBarry Smith     PetscInt          i,n;
2551fa22f6d0SBarry Smith 
2552fa22f6d0SBarry Smith     if (!mat->xx1) {
2553fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->xx1);CHKERRQ(ierr);
2554fa22f6d0SBarry Smith       ierr = VecDuplicate(bb,&mat->bb1);CHKERRQ(ierr);
2555fa22f6d0SBarry Smith     }
2556fa22f6d0SBarry Smith     xx1 = mat->xx1;
2557fa22f6d0SBarry Smith     bb1 = mat->bb1;
2558fa22f6d0SBarry Smith 
255941f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP),fshift,lits,1,xx);CHKERRQ(ierr);
2560fa22f6d0SBarry Smith 
2561fa22f6d0SBarry Smith     if (!mat->diag) {
2562effcda25SBarry Smith       /* this is wrong for same matrix with new nonzero values */
2563fa22f6d0SBarry Smith       ierr = MatGetVecs(matin,&mat->diag,PETSC_NULL);CHKERRQ(ierr);
2564fa22f6d0SBarry Smith       ierr = MatGetDiagonal(matin,mat->diag);CHKERRQ(ierr);
2565fa22f6d0SBarry Smith     }
2566fa22f6d0SBarry Smith     ierr = MatHasOperation(matin,MATOP_MULT_DIAGONAL_BLOCK,&hasop);CHKERRQ(ierr);
2567fa22f6d0SBarry Smith 
2568fa22f6d0SBarry Smith     if (hasop) {
2569fa22f6d0SBarry Smith       ierr = MatMultDiagonalBlock(matin,xx,bb1);CHKERRQ(ierr);
2570887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
257120f1ed55SBarry Smith     } else {
257220f1ed55SBarry Smith       /*
257320f1ed55SBarry Smith           These two lines are replaced by code that may be a bit faster for a good compiler
257420f1ed55SBarry Smith       ierr = VecPointwiseMult(mat->slvec1a,mat->diag,xx);CHKERRQ(ierr);
2575887ee2caSBarry Smith       ierr = VecAYPX(mat->slvec1a,scale,bb);CHKERRQ(ierr);
257620f1ed55SBarry Smith       */
257720f1ed55SBarry Smith       ierr = VecGetArray(mat->slvec1a,&sl);CHKERRQ(ierr);
257820f1ed55SBarry Smith       ierr = VecGetArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
257920f1ed55SBarry Smith       ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
258020f1ed55SBarry Smith       ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
258120f1ed55SBarry Smith       ierr = VecGetLocalSize(xx,&n);CHKERRQ(ierr);
2582887ee2caSBarry Smith       if (omega == 1.0) {
258320f1ed55SBarry Smith 	for (i=0; i<n; i++) {
258420f1ed55SBarry Smith 	  sl[i] = b[i] - diag[i]*x[i];
258520f1ed55SBarry Smith 	}
258620f1ed55SBarry Smith         ierr = PetscLogFlops(2.0*n);CHKERRQ(ierr);
2587887ee2caSBarry Smith       } else {
2588887ee2caSBarry Smith 	for (i=0; i<n; i++) {
2589887ee2caSBarry Smith 	  sl[i] = b[i] + scale*diag[i]*x[i];
2590887ee2caSBarry Smith 	}
2591887ee2caSBarry Smith         ierr = PetscLogFlops(3.0*n);CHKERRQ(ierr);
2592887ee2caSBarry Smith       }
259320f1ed55SBarry Smith       ierr = VecRestoreArray(mat->slvec1a,&sl);CHKERRQ(ierr);
259420f1ed55SBarry Smith       ierr = VecRestoreArray(mat->diag,(PetscScalar**)&diag);CHKERRQ(ierr);
259520f1ed55SBarry Smith       ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
259620f1ed55SBarry Smith       ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
259720f1ed55SBarry Smith     }
2598fa22f6d0SBarry Smith 
2599fa22f6d0SBarry Smith     /* multiply off-diagonal portion of matrix */
2600fa22f6d0SBarry Smith     ierr = VecSet(mat->slvec1b,0.0);CHKERRQ(ierr);
2601fa22f6d0SBarry Smith     ierr = (*mat->B->ops->multtranspose)(mat->B,xx,mat->slvec0b);CHKERRQ(ierr);
2602fa22f6d0SBarry Smith     ierr = VecGetArray(mat->slvec0,&from);CHKERRQ(ierr);
2603fa22f6d0SBarry Smith     ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2604fa22f6d0SBarry Smith     ierr = PetscMemcpy(from,x,bs*mbs*sizeof(MatScalar));CHKERRQ(ierr);
2605fa22f6d0SBarry Smith     ierr = VecRestoreArray(mat->slvec0,&from);CHKERRQ(ierr);
2606fa22f6d0SBarry Smith     ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2607fa22f6d0SBarry Smith     ierr = VecScatterBegin(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2608fa22f6d0SBarry Smith     ierr = VecScatterEnd(mat->sMvctx,mat->slvec0,mat->slvec1,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2609effcda25SBarry Smith     ierr = (*mat->B->ops->multadd)(mat->B,mat->slvec1b,mat->slvec1a,mat->slvec1a);CHKERRQ(ierr);
2610fa22f6d0SBarry Smith 
2611fa22f6d0SBarry Smith     /* local sweep */
261241f059aeSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,mat->slvec1a,omega,(MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP),fshift,lits,1,xx1);CHKERRQ(ierr);
2613fa22f6d0SBarry Smith     ierr = VecAXPY(xx,1.0,xx1);CHKERRQ(ierr);
2614ffe4fb16SHong Zhang   } else {
2615e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2616ffe4fb16SHong Zhang   }
2617ffe4fb16SHong Zhang   PetscFunctionReturn(0);
2618ffe4fb16SHong Zhang }
2619ffe4fb16SHong Zhang 
2620ffe4fb16SHong Zhang #undef __FUNCT__
262141f059aeSBarry Smith #define __FUNCT__ "MatSOR_MPISBAIJ_2comm"
262241f059aeSBarry Smith PetscErrorCode MatSOR_MPISBAIJ_2comm(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2623ffe4fb16SHong Zhang {
2624ffe4fb16SHong Zhang   Mat_MPISBAIJ   *mat = (Mat_MPISBAIJ*)matin->data;
2625dfbe8321SBarry Smith   PetscErrorCode ierr;
26262798e883SHong Zhang   Vec            lvec1,bb1;
26272798e883SHong Zhang 
26282798e883SHong Zhang   PetscFunctionBegin;
2629e32f2f54SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2630e32f2f54SBarry Smith   if (matin->rmap->bs > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
26312798e883SHong Zhang 
2632c14dc6b6SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
26332798e883SHong Zhang     if ( flag & SOR_ZERO_INITIAL_GUESS ) {
263441f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
26352798e883SHong Zhang       its--;
26362798e883SHong Zhang     }
26372798e883SHong Zhang 
26382798e883SHong Zhang     ierr = VecDuplicate(mat->lvec,&lvec1);CHKERRQ(ierr);
26392798e883SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
26402798e883SHong Zhang     while (its--){
2641ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26422798e883SHong Zhang 
26432798e883SHong Zhang       /* lower diagonal part: bb1 = bb - B^T*xx */
26442798e883SHong Zhang       ierr = (*mat->B->ops->multtranspose)(mat->B,xx,lvec1);CHKERRQ(ierr);
2645efb30889SBarry Smith       ierr = VecScale(lvec1,-1.0);CHKERRQ(ierr);
26462798e883SHong Zhang 
2647ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
26482798e883SHong Zhang       ierr = VecCopy(bb,bb1);CHKERRQ(ierr);
2649ca9f406cSSatish Balay       ierr = VecScatterBegin(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26502798e883SHong Zhang 
26512798e883SHong Zhang       /* upper diagonal part: bb1 = bb1 - B*x */
2652efb30889SBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
26532798e883SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb1,bb1);CHKERRQ(ierr);
26542798e883SHong Zhang 
2655ca9f406cSSatish Balay       ierr = VecScatterEnd(mat->Mvctx,lvec1,bb1,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
26562798e883SHong Zhang 
2657c14dc6b6SHong Zhang       /* diagonal sweep */
265841f059aeSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);CHKERRQ(ierr);
26592798e883SHong Zhang     }
26602798e883SHong Zhang     ierr = VecDestroy(lvec1);CHKERRQ(ierr);
26612798e883SHong Zhang     ierr = VecDestroy(bb1);CHKERRQ(ierr);
2662c14dc6b6SHong Zhang   } else {
2663e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSORType is not supported for SBAIJ matrix format");
2664c14dc6b6SHong Zhang   }
26652798e883SHong Zhang   PetscFunctionReturn(0);
26662798e883SHong Zhang }
26672798e883SHong Zhang 
2668