1*ff64ff16SBarry Smith /*$Id: mpisbaij.c,v 1.21 2000/09/25 19:53:24 curfman Exp bsmith $*/ 2a30f8f8cSSatish Balay 3c8117e22SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4a30f8f8cSSatish Balay #include "src/vec/vecimpl.h" 5a30f8f8cSSatish Balay #include "mpisbaij.h" 6a30f8f8cSSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 7a30f8f8cSSatish Balay 8a30f8f8cSSatish Balay extern int MatSetUpMultiply_MPISBAIJ(Mat); 9a30f8f8cSSatish Balay extern int DisAssemble_MPISBAIJ(Mat); 10a30f8f8cSSatish Balay extern int MatIncreaseOverlap_MPISBAIJ(Mat,int,IS *,int); 11a30f8f8cSSatish Balay extern int MatGetSubMatrices_MPISBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12a30f8f8cSSatish Balay extern int MatGetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *); 13a30f8f8cSSatish Balay extern int MatSetValues_SeqSBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15a30f8f8cSSatish Balay extern int MatGetRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 16a30f8f8cSSatish Balay extern int MatRestoreRow_SeqSBAIJ(Mat,int,int*,int**,Scalar**); 17a30f8f8cSSatish Balay extern int MatPrintHelp_SeqSBAIJ(Mat); 18a30f8f8cSSatish Balay extern int MatZeroRows_SeqSBAIJ(Mat,IS,Scalar*); 19a30f8f8cSSatish Balay 20a30f8f8cSSatish Balay /* UGLY, ugly, ugly 21a30f8f8cSSatish Balay When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 22a30f8f8cSSatish Balay not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 23a30f8f8cSSatish Balay inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 24a30f8f8cSSatish Balay converts the entries into single precision and then calls ..._MatScalar() to put them 25a30f8f8cSSatish Balay into the single precision data structures. 26a30f8f8cSSatish Balay */ 27a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 28a30f8f8cSSatish Balay extern int MatSetValuesBlocked_SeqSBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 29a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 30a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 31a30f8f8cSSatish Balay extern int MatSetValues_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 32a30f8f8cSSatish Balay extern int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 33a30f8f8cSSatish Balay #else 34a30f8f8cSSatish Balay #define MatSetValuesBlocked_SeqSBAIJ_MatScalar MatSetValuesBlocked_SeqSBAIJ 35a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_MatScalar MatSetValues_MPISBAIJ 36a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_MatScalar MatSetValuesBlocked_MPISBAIJ 37a30f8f8cSSatish Balay #define MatSetValues_MPISBAIJ_HT_MatScalar MatSetValues_MPISBAIJ_HT 38a30f8f8cSSatish Balay #define MatSetValuesBlocked_MPISBAIJ_HT_MatScalar MatSetValuesBlocked_MPISBAIJ_HT 39a30f8f8cSSatish Balay #endif 40a30f8f8cSSatish Balay 41a30f8f8cSSatish Balay EXTERN_C_BEGIN 42a30f8f8cSSatish Balay #undef __FUNC__ 43f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatStoreValues_MPISBAIJ"></a>*/"MatStoreValues_MPISBAIJ" 44a30f8f8cSSatish Balay int MatStoreValues_MPISBAIJ(Mat mat) 45a30f8f8cSSatish Balay { 46f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 47a30f8f8cSSatish Balay int ierr; 48a30f8f8cSSatish Balay 49a30f8f8cSSatish Balay PetscFunctionBegin; 50a30f8f8cSSatish Balay ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 51a30f8f8cSSatish Balay ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 52a30f8f8cSSatish Balay PetscFunctionReturn(0); 53a30f8f8cSSatish Balay } 54a30f8f8cSSatish Balay EXTERN_C_END 55a30f8f8cSSatish Balay 56a30f8f8cSSatish Balay EXTERN_C_BEGIN 57a30f8f8cSSatish Balay #undef __FUNC__ 58f3566a2aSHong Zhang #define __FUNC__ /*<a name="MatRetrieveValues_MPISBAIJ"></a>*/"MatRetrieveValues_MPISBAIJ" 59a30f8f8cSSatish Balay int MatRetrieveValues_MPISBAIJ(Mat mat) 60a30f8f8cSSatish Balay { 61f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data; 62a30f8f8cSSatish Balay int ierr; 63a30f8f8cSSatish Balay 64a30f8f8cSSatish Balay PetscFunctionBegin; 65a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 66a30f8f8cSSatish Balay ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 67a30f8f8cSSatish Balay PetscFunctionReturn(0); 68a30f8f8cSSatish Balay } 69a30f8f8cSSatish Balay EXTERN_C_END 70a30f8f8cSSatish Balay 71a30f8f8cSSatish Balay /* 72a30f8f8cSSatish Balay Local utility routine that creates a mapping from the global column 73a30f8f8cSSatish Balay number to the local number in the off-diagonal part of the local 74a30f8f8cSSatish Balay storage of the matrix. This is done in a non scable way since the 75a30f8f8cSSatish Balay length of colmap equals the global matrix length. 76a30f8f8cSSatish Balay */ 77a30f8f8cSSatish Balay #undef __FUNC__ 78a30f8f8cSSatish Balay #define __FUNC__ /*<a name="CreateColmap_MPISBAIJ_Private"></a>*/"CreateColmap_MPISBAIJ_Private" 79a30f8f8cSSatish Balay static int CreateColmap_MPISBAIJ_Private(Mat mat) 80a30f8f8cSSatish Balay { 81a30f8f8cSSatish Balay PetscFunctionBegin; 82f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 8396e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 84a30f8f8cSSatish Balay } 85a30f8f8cSSatish Balay 86a30f8f8cSSatish Balay #define CHUNKSIZE 10 87a30f8f8cSSatish Balay 88a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv) \ 89a30f8f8cSSatish Balay { \ 90a30f8f8cSSatish Balay \ 91a30f8f8cSSatish Balay brow = row/bs; \ 92a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 93a30f8f8cSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 94a30f8f8cSSatish Balay bcol = col/bs; \ 95a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 96a30f8f8cSSatish Balay low = 0; high = nrow; \ 97a30f8f8cSSatish Balay while (high-low > 3) { \ 98a30f8f8cSSatish Balay t = (low+high)/2; \ 99a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 100a30f8f8cSSatish Balay else low = t; \ 101a30f8f8cSSatish Balay } \ 102a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 103a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 104a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 105a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 106a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 107a30f8f8cSSatish Balay else *bap = value; \ 108a30f8f8cSSatish Balay goto a_noinsert; \ 109a30f8f8cSSatish Balay } \ 110a30f8f8cSSatish Balay } \ 111a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \ 112a30f8f8cSSatish Balay else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 113a30f8f8cSSatish Balay if (nrow >= rmax) { \ 114a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 115a30f8f8cSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 116a30f8f8cSSatish Balay MatScalar *new_a; \ 117a30f8f8cSSatish Balay \ 118a30f8f8cSSatish Balay if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 119a30f8f8cSSatish Balay \ 120a30f8f8cSSatish Balay /* malloc new storage space */ \ 121a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 122a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 123a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 124a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 125a30f8f8cSSatish Balay \ 126a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 127a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 128a30f8f8cSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 129a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 130a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 131a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 132a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 133a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 134a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 135a30f8f8cSSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 136a30f8f8cSSatish Balay /* free up old matrix storage */ \ 137a30f8f8cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 138a30f8f8cSSatish Balay if (!a->singlemalloc) { \ 139a30f8f8cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 140a30f8f8cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 141a30f8f8cSSatish Balay } \ 142a30f8f8cSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 143a30f8f8cSSatish Balay a->singlemalloc = PETSC_TRUE; \ 144a30f8f8cSSatish Balay \ 145a30f8f8cSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 146a30f8f8cSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 147a30f8f8cSSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 148a30f8f8cSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; \ 149a30f8f8cSSatish Balay a->reallocs++; \ 150a30f8f8cSSatish Balay a->s_nz++; \ 151a30f8f8cSSatish Balay } \ 152a30f8f8cSSatish Balay N = nrow++ - 1; \ 153a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 154a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 155a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 156a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 157a30f8f8cSSatish Balay } \ 158a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 159a30f8f8cSSatish Balay rp[_i] = bcol; \ 160a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 161a30f8f8cSSatish Balay a_noinsert:; \ 162a30f8f8cSSatish Balay ailen[brow] = nrow; \ 163a30f8f8cSSatish Balay } 164a30f8f8cSSatish Balay #ifndef MatSetValues_SeqBAIJ_B_Private 165a30f8f8cSSatish Balay #define MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv) \ 166a30f8f8cSSatish Balay { \ 167a30f8f8cSSatish Balay brow = row/bs; \ 168a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 169a30f8f8cSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 170a30f8f8cSSatish Balay bcol = col/bs; \ 171a30f8f8cSSatish Balay ridx = row % bs; cidx = col % bs; \ 172a30f8f8cSSatish Balay low = 0; high = nrow; \ 173a30f8f8cSSatish Balay while (high-low > 3) { \ 174a30f8f8cSSatish Balay t = (low+high)/2; \ 175a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \ 176a30f8f8cSSatish Balay else low = t; \ 177a30f8f8cSSatish Balay } \ 178a30f8f8cSSatish Balay for (_i=low; _i<high; _i++) { \ 179a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \ 180a30f8f8cSSatish Balay if (rp[_i] == bcol) { \ 181a30f8f8cSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 182a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 183a30f8f8cSSatish Balay else *bap = value; \ 184a30f8f8cSSatish Balay goto b_noinsert; \ 185a30f8f8cSSatish Balay } \ 186a30f8f8cSSatish Balay } \ 187a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \ 188a30f8f8cSSatish Balay else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 189a30f8f8cSSatish Balay if (nrow >= rmax) { \ 190a30f8f8cSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 191a30f8f8cSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 192a30f8f8cSSatish Balay MatScalar *new_a; \ 193a30f8f8cSSatish Balay \ 194a30f8f8cSSatish Balay if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 195a30f8f8cSSatish Balay \ 196a30f8f8cSSatish Balay /* malloc new storage space */ \ 197a30f8f8cSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 198a30f8f8cSSatish Balay new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 199a30f8f8cSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 200a30f8f8cSSatish Balay new_i = new_j + new_nz; \ 201a30f8f8cSSatish Balay \ 202a30f8f8cSSatish Balay /* copy over old data into new slots */ \ 203a30f8f8cSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 204a30f8f8cSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 205a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 206a30f8f8cSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 207a30f8f8cSSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 208a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 209a30f8f8cSSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 210a30f8f8cSSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 211a30f8f8cSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 212a30f8f8cSSatish Balay /* free up old matrix storage */ \ 213a30f8f8cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 214a30f8f8cSSatish Balay if (!b->singlemalloc) { \ 215a30f8f8cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 216a30f8f8cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 217a30f8f8cSSatish Balay } \ 218a30f8f8cSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 219a30f8f8cSSatish Balay b->singlemalloc = PETSC_TRUE; \ 220a30f8f8cSSatish Balay \ 221a30f8f8cSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 222a30f8f8cSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 223a30f8f8cSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 224a30f8f8cSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 225a30f8f8cSSatish Balay b->reallocs++; \ 226a30f8f8cSSatish Balay b->nz++; \ 227a30f8f8cSSatish Balay } \ 228a30f8f8cSSatish Balay N = nrow++ - 1; \ 229a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \ 230a30f8f8cSSatish Balay for (ii=N; ii>=_i; ii--) { \ 231a30f8f8cSSatish Balay rp[ii+1] = rp[ii]; \ 232a30f8f8cSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 233a30f8f8cSSatish Balay } \ 234a30f8f8cSSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 235a30f8f8cSSatish Balay rp[_i] = bcol; \ 236a30f8f8cSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 237a30f8f8cSSatish Balay b_noinsert:; \ 238a30f8f8cSSatish Balay bilen[brow] = nrow; \ 239a30f8f8cSSatish Balay } 240a30f8f8cSSatish Balay #endif 241a30f8f8cSSatish Balay 242a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 243a30f8f8cSSatish Balay #undef __FUNC__ 244a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ"></a>*/"MatSetValues_MPISBAIJ" 245a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 246a30f8f8cSSatish Balay { 247a30f8f8cSSatish Balay Mat_MPISBAIJ *b = (Mat_MPISBAIJ*)mat->data; 248a30f8f8cSSatish Balay int ierr,i,N = m*n; 249a30f8f8cSSatish Balay MatScalar *vsingle; 250a30f8f8cSSatish Balay 251a30f8f8cSSatish Balay PetscFunctionBegin; 252a30f8f8cSSatish Balay if (N > b->setvalueslen) { 253a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 254a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 255a30f8f8cSSatish Balay b->setvalueslen = N; 256a30f8f8cSSatish Balay } 257a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 258a30f8f8cSSatish Balay 259a30f8f8cSSatish Balay for (i=0; i<N; i++) { 260a30f8f8cSSatish Balay vsingle[i] = v[i]; 261a30f8f8cSSatish Balay } 262a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 263a30f8f8cSSatish Balay PetscFunctionReturn(0); 264a30f8f8cSSatish Balay } 265a30f8f8cSSatish Balay 266a30f8f8cSSatish Balay #undef __FUNC__ 267a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 268a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 269a30f8f8cSSatish Balay { 270a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 271a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 272a30f8f8cSSatish Balay MatScalar *vsingle; 273a30f8f8cSSatish Balay 274a30f8f8cSSatish Balay PetscFunctionBegin; 275a30f8f8cSSatish Balay if (N > b->setvalueslen) { 276a30f8f8cSSatish Balay if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 277a30f8f8cSSatish Balay b->setvaluescopy = (MatScalar*)PetscMalloc(N*sizeof(MatScalar));CHKPTRQ(b->setvaluescopy); 278a30f8f8cSSatish Balay b->setvalueslen = N; 279a30f8f8cSSatish Balay } 280a30f8f8cSSatish Balay vsingle = b->setvaluescopy; 281a30f8f8cSSatish Balay for (i=0; i<N; i++) { 282a30f8f8cSSatish Balay vsingle[i] = v[i]; 283a30f8f8cSSatish Balay } 284a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 285a30f8f8cSSatish Balay PetscFunctionReturn(0); 286a30f8f8cSSatish Balay } 287a30f8f8cSSatish Balay 288a30f8f8cSSatish Balay #undef __FUNC__ 289a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT"></a>*/"MatSetValues_MPISBAIJ_HT" 290a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 291a30f8f8cSSatish Balay { 292a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 293a30f8f8cSSatish Balay int ierr,i,N = m*n; 294a30f8f8cSSatish Balay MatScalar *vsingle; 295a30f8f8cSSatish Balay 296a30f8f8cSSatish Balay PetscFunctionBegin; 297f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 2984d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 299a30f8f8cSSatish Balay } 300a30f8f8cSSatish Balay 301a30f8f8cSSatish Balay #undef __FUNC__ 302a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ_HT"></a>*/"MatSetValuesBlocked_MPISBAIJ_HT" 303a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 304a30f8f8cSSatish Balay { 305a30f8f8cSSatish Balay Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 306a30f8f8cSSatish Balay int ierr,i,N = m*n*b->bs2; 307a30f8f8cSSatish Balay MatScalar *vsingle; 308a30f8f8cSSatish Balay 309a30f8f8cSSatish Balay PetscFunctionBegin; 310f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 3114d76ade7SHong Zhang /* PetscFunctionReturn(0); */ 312a30f8f8cSSatish Balay } 313a30f8f8cSSatish Balay #endif 314a30f8f8cSSatish Balay 315a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 316a30f8f8cSSatish Balay Any a(i,j) with i>j input by user is ingored. 317a30f8f8cSSatish Balay */ 318a30f8f8cSSatish Balay #undef __FUNC__ 319a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPIBAIJ"></a>*/"MatSetValues_MPIBAIJ" 320a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 321a30f8f8cSSatish Balay { 322a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 323a30f8f8cSSatish Balay MatScalar value; 324a30f8f8cSSatish Balay int ierr,i,j,row,col; 325a30f8f8cSSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 326a30f8f8cSSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 327a30f8f8cSSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 328a30f8f8cSSatish Balay 329a30f8f8cSSatish Balay /* Some Variables required in the macro */ 330a30f8f8cSSatish Balay Mat A = baij->A; 331a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)(A)->data; 332a30f8f8cSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 333a30f8f8cSSatish Balay MatScalar *aa=a->a; 334a30f8f8cSSatish Balay 335a30f8f8cSSatish Balay Mat B = baij->B; 336a30f8f8cSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 337a30f8f8cSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 338a30f8f8cSSatish Balay MatScalar *ba=b->a; 339a30f8f8cSSatish Balay 340a30f8f8cSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 341a30f8f8cSSatish Balay int low,high,t,ridx,cidx,bs2=a->bs2; 342a30f8f8cSSatish Balay MatScalar *ap,*bap; 343a30f8f8cSSatish Balay 344a30f8f8cSSatish Balay /* for stash */ 345f65c83cfSHong Zhang int n_loc, *in_loc=0; 346f65c83cfSHong Zhang MatScalar *v_loc=0; 347a30f8f8cSSatish Balay 348a30f8f8cSSatish Balay PetscFunctionBegin; 349a30f8f8cSSatish Balay 350a30f8f8cSSatish Balay if(!baij->donotstash){ 351a30f8f8cSSatish Balay in_loc = (int*)PetscMalloc(n*sizeof(int));CHKPTRQ(in_loc); 352a30f8f8cSSatish Balay v_loc = (MatScalar*)PetscMalloc(n*sizeof(MatScalar));CHKPTRQ(v_loc); 353a30f8f8cSSatish Balay } 354a30f8f8cSSatish Balay 355a30f8f8cSSatish Balay for (i=0; i<m; i++) { 356a30f8f8cSSatish Balay if (im[i] < 0) continue; 357a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 358a30f8f8cSSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 359a30f8f8cSSatish Balay #endif 360a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */ 361a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */ 362a30f8f8cSSatish Balay for (j=0; j<n; j++) { 363f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 364a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ /* diag entry (A) */ 365a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */ 366a30f8f8cSSatish Balay brow = row/bs; bcol = col/bs; 367a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */ 368a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 369a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_A_Private(row,col,value,addv); 370a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 371a30f8f8cSSatish Balay } else if (in[j] < 0) continue; 372a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 373a30f8f8cSSatish Balay else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 374a30f8f8cSSatish Balay #endif 375a30f8f8cSSatish Balay else { /* off-diag entry (B) */ 376a30f8f8cSSatish Balay if (mat->was_assembled) { 377a30f8f8cSSatish Balay if (!baij->colmap) { 378a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 379a30f8f8cSSatish Balay } 380a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 381a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 382a30f8f8cSSatish Balay col = col - 1 + in[j]%bs; 383a30f8f8cSSatish Balay #else 384a30f8f8cSSatish Balay col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 385a30f8f8cSSatish Balay #endif 386a30f8f8cSSatish Balay if (col < 0 && !((Mat_SeqSBAIJ*)(baij->A->data))->nonew) { 387a30f8f8cSSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 388a30f8f8cSSatish Balay col = in[j]; 389a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 390a30f8f8cSSatish Balay B = baij->B; 391a30f8f8cSSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 392a30f8f8cSSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 393a30f8f8cSSatish Balay ba=b->a; 394a30f8f8cSSatish Balay } 395a30f8f8cSSatish Balay } else col = in[j]; 396a30f8f8cSSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 397a30f8f8cSSatish Balay MatSetValues_SeqSBAIJ_B_Private(row,col,value,addv); 398a30f8f8cSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 399a30f8f8cSSatish Balay } 400a30f8f8cSSatish Balay } 401a30f8f8cSSatish Balay } else { /* off processor entry */ 402a30f8f8cSSatish Balay if (!baij->donotstash) { 403a30f8f8cSSatish Balay n_loc = 0; 404a30f8f8cSSatish Balay for (j=0; j<n; j++){ 405f65c83cfSHong Zhang if (im[i]/bs > in[j]/bs) continue; /* ignore lower triangular blocks */ 406a30f8f8cSSatish Balay in_loc[n_loc] = in[j]; 407a30f8f8cSSatish Balay if (roworiented) { 408a30f8f8cSSatish Balay v_loc[n_loc] = v[i*n+j]; 409a30f8f8cSSatish Balay } else { 410a30f8f8cSSatish Balay v_loc[n_loc] = v[j*m+i]; 411a30f8f8cSSatish Balay } 412a30f8f8cSSatish Balay n_loc++; 413a30f8f8cSSatish Balay } 414a30f8f8cSSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n_loc,in_loc,v_loc);CHKERRQ(ierr); 415a30f8f8cSSatish Balay } 416a30f8f8cSSatish Balay } 417a30f8f8cSSatish Balay } 418a30f8f8cSSatish Balay 419a30f8f8cSSatish Balay if(!baij->donotstash){ 420a30f8f8cSSatish Balay ierr = PetscFree(in_loc);CHKERRQ(ierr); 421a30f8f8cSSatish Balay ierr = PetscFree(v_loc);CHKERRQ(ierr); 422a30f8f8cSSatish Balay } 423a30f8f8cSSatish Balay PetscFunctionReturn(0); 424a30f8f8cSSatish Balay } 425a30f8f8cSSatish Balay 426a30f8f8cSSatish Balay #undef __FUNC__ 427a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValuesBlocked_MPISBAIJ"></a>*/"MatSetValuesBlocked_MPISBAIJ" 428a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 429a30f8f8cSSatish Balay { 430a30f8f8cSSatish Balay PetscFunctionBegin; 431f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 43296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 433a30f8f8cSSatish Balay } 434a30f8f8cSSatish Balay 435a30f8f8cSSatish Balay #define HASH_KEY 0.6180339887 436a30f8f8cSSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 437a30f8f8cSSatish Balay /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 438a30f8f8cSSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 439a30f8f8cSSatish Balay #undef __FUNC__ 440a30f8f8cSSatish Balay #define __FUNC__ /*<a name="MatSetValues_MPISBAIJ_HT_MatScalar"></a>*/"MatSetValues_MPISBAIJ_HT_MatScalar" 441a30f8f8cSSatish Balay int MatSetValues_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 442a30f8f8cSSatish Balay { 443a30f8f8cSSatish Balay PetscFunctionBegin; 444f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 44596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 446a30f8f8cSSatish Balay } 447a30f8f8cSSatish Balay 448a30f8f8cSSatish Balay #undef __FUNC__ 449a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPISBAIJ_HT_MatScalar" 450a30f8f8cSSatish Balay int MatSetValuesBlocked_MPISBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 451a30f8f8cSSatish Balay { 452a30f8f8cSSatish Balay PetscFunctionBegin; 453f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 45496e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 455a30f8f8cSSatish Balay } 456a30f8f8cSSatish Balay 457a30f8f8cSSatish Balay #undef __FUNC__ 458a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetValues_MPISBAIJ" 459a30f8f8cSSatish Balay int MatGetValues_MPISBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 460a30f8f8cSSatish Balay { 461f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 462a30f8f8cSSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 463a30f8f8cSSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 464a30f8f8cSSatish Balay 465a30f8f8cSSatish Balay PetscFunctionBegin; 466a30f8f8cSSatish Balay for (i=0; i<m; i++) { 467a30f8f8cSSatish Balay if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 468a30f8f8cSSatish Balay if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 469a30f8f8cSSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 470a30f8f8cSSatish Balay row = idxm[i] - bsrstart; 471a30f8f8cSSatish Balay for (j=0; j<n; j++) { 472a30f8f8cSSatish Balay if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 473a30f8f8cSSatish Balay if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 474a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 475a30f8f8cSSatish Balay col = idxn[j] - bscstart; 476c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 477a30f8f8cSSatish Balay } else { 478a30f8f8cSSatish Balay if (!baij->colmap) { 479a30f8f8cSSatish Balay ierr = CreateColmap_MPISBAIJ_Private(mat);CHKERRQ(ierr); 480a30f8f8cSSatish Balay } 481a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 482a30f8f8cSSatish Balay ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 483a30f8f8cSSatish Balay data --; 484a30f8f8cSSatish Balay #else 485a30f8f8cSSatish Balay data = baij->colmap[idxn[j]/bs]-1; 486a30f8f8cSSatish Balay #endif 487a30f8f8cSSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 488a30f8f8cSSatish Balay else { 489a30f8f8cSSatish Balay col = data + idxn[j]%bs; 490c8407628SSatish Balay ierr = MatGetValues_SeqSBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 491a30f8f8cSSatish Balay } 492a30f8f8cSSatish Balay } 493a30f8f8cSSatish Balay } 494a30f8f8cSSatish Balay } else { 495a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 496a30f8f8cSSatish Balay } 497a30f8f8cSSatish Balay } 498a30f8f8cSSatish Balay PetscFunctionReturn(0); 499a30f8f8cSSatish Balay } 500a30f8f8cSSatish Balay 501a30f8f8cSSatish Balay #undef __FUNC__ 502a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatNorm_MPISBAIJ" 503a30f8f8cSSatish Balay int MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal *norm) 504a30f8f8cSSatish Balay { 505a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 506bc0ba53dSHong Zhang /* Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ*)baij->A->data; */ 507bc0ba53dSHong Zhang /* Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ*)baij->B->data; */ 508a30f8f8cSSatish Balay int ierr; 509a30f8f8cSSatish Balay PetscReal sum[2],*lnorm2; 510a30f8f8cSSatish Balay 511a30f8f8cSSatish Balay PetscFunctionBegin; 512a30f8f8cSSatish Balay if (baij->size == 1) { 513a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 514a30f8f8cSSatish Balay } else { 515a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) { 516ee237329SHong Zhang lnorm2 = (double*)PetscMalloc(2*sizeof(double));CHKPTRQ(lnorm2); 517a30f8f8cSSatish Balay ierr = MatNorm(baij->A,type,lnorm2);CHKERRQ(ierr); 518a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2++; /* squar power of norm(A) */ 519a30f8f8cSSatish Balay ierr = MatNorm(baij->B,type,lnorm2);CHKERRQ(ierr); 520a30f8f8cSSatish Balay *lnorm2 = (*lnorm2)*(*lnorm2); lnorm2--; /* squar power of norm(B) */ 521a30f8f8cSSatish Balay /* 522a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 523a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], lnorm2=%g, %g\n",rank,lnorm2[0],lnorm2[1]); 524a30f8f8cSSatish Balay */ 525a30f8f8cSSatish Balay ierr = MPI_Allreduce(lnorm2,&sum,2,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 526a30f8f8cSSatish Balay /* 527a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d], sum=%g, %g\n",rank,sum[0],sum[1]); 528a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); */ 529a30f8f8cSSatish Balay 530a30f8f8cSSatish Balay *norm = sqrt(sum[0] + 2*sum[1]); 531a30f8f8cSSatish Balay ierr = PetscFree(lnorm2);CHKERRQ(ierr); 532a30f8f8cSSatish Balay } else { 533a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 534a30f8f8cSSatish Balay } 535a30f8f8cSSatish Balay } 536a30f8f8cSSatish Balay PetscFunctionReturn(0); 537a30f8f8cSSatish Balay } 538a30f8f8cSSatish Balay 539a30f8f8cSSatish Balay /* 540a30f8f8cSSatish Balay Creates the hash table, and sets the table 541a30f8f8cSSatish Balay This table is created only once. 542a30f8f8cSSatish Balay If new entried need to be added to the matrix 543a30f8f8cSSatish Balay then the hash table has to be destroyed and 544a30f8f8cSSatish Balay recreated. 545a30f8f8cSSatish Balay */ 546a30f8f8cSSatish Balay #undef __FUNC__ 547a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateHashTable_MPISBAIJ_Private" 548a30f8f8cSSatish Balay int MatCreateHashTable_MPISBAIJ_Private(Mat mat,PetscReal factor) 549a30f8f8cSSatish Balay { 550a30f8f8cSSatish Balay PetscFunctionBegin; 551f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 55296e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 553a30f8f8cSSatish Balay } 554a30f8f8cSSatish Balay 555a30f8f8cSSatish Balay #undef __FUNC__ 556a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyBegin_MPISBAIJ" 557a30f8f8cSSatish Balay int MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode) 558a30f8f8cSSatish Balay { 559a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 560a30f8f8cSSatish Balay int ierr,nstash,reallocs; 561a30f8f8cSSatish Balay InsertMode addv; 562a30f8f8cSSatish Balay 563a30f8f8cSSatish Balay PetscFunctionBegin; 564a30f8f8cSSatish Balay if (baij->donotstash) { 565a30f8f8cSSatish Balay PetscFunctionReturn(0); 566a30f8f8cSSatish Balay } 567a30f8f8cSSatish Balay 568a30f8f8cSSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 569a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 570a30f8f8cSSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 571a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 572a30f8f8cSSatish Balay } 573a30f8f8cSSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 574a30f8f8cSSatish Balay 575a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 576a30f8f8cSSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 577a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 578a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 579a30f8f8cSSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 580a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPISBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 581a30f8f8cSSatish Balay PetscFunctionReturn(0); 582a30f8f8cSSatish Balay } 583a30f8f8cSSatish Balay 584a30f8f8cSSatish Balay #undef __FUNC__ 585a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatAssemblyEnd_MPISBAIJ" 586a30f8f8cSSatish Balay int MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode) 587a30f8f8cSSatish Balay { 588a30f8f8cSSatish Balay Mat_MPISBAIJ *baij=(Mat_MPISBAIJ*)mat->data; 589a30f8f8cSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)baij->A->data; 590a30f8f8cSSatish Balay Mat_SeqBAIJ *b=(Mat_SeqBAIJ*)baij->B->data; 591a30f8f8cSSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 592a30f8f8cSSatish Balay int *row,*col,other_disassembled; 593a30f8f8cSSatish Balay PetscTruth r1,r2,r3; 594a30f8f8cSSatish Balay MatScalar *val; 595a30f8f8cSSatish Balay InsertMode addv = mat->insertmode; 596a30f8f8cSSatish Balay int rank; 597a30f8f8cSSatish Balay 598a30f8f8cSSatish Balay PetscFunctionBegin; 599a30f8f8cSSatish Balay /* remove 2 line below later */ 600a30f8f8cSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD, &rank);CHKERRQ(ierr); 601a30f8f8cSSatish Balay 602a30f8f8cSSatish Balay if (!baij->donotstash) { 603a30f8f8cSSatish Balay while (1) { 604a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 605a30f8f8cSSatish Balay /* 606a30f8f8cSSatish Balay PetscSynchronizedPrintf(PETSC_COMM_WORLD,"[%d]: in AssemblyEnd, stash, flg=%d\n",rank,flg); 607a30f8f8cSSatish Balay PetscSynchronizedFlush(PETSC_COMM_WORLD); 608a30f8f8cSSatish Balay */ 609a30f8f8cSSatish Balay if (!flg) break; 610a30f8f8cSSatish Balay 611a30f8f8cSSatish Balay for (i=0; i<n;) { 612a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 613a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 614a30f8f8cSSatish Balay if (j < n) ncols = j-i; 615a30f8f8cSSatish Balay else ncols = n-i; 616a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */ 617a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 618a30f8f8cSSatish Balay i = j; 619a30f8f8cSSatish Balay } 620a30f8f8cSSatish Balay } 621a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 622a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 623a30f8f8cSSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 624a30f8f8cSSatish Balay restore the original flags */ 625a30f8f8cSSatish Balay r1 = baij->roworiented; 626a30f8f8cSSatish Balay r2 = a->roworiented; 627a30f8f8cSSatish Balay r3 = b->roworiented; 628a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE; 629a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 630a30f8f8cSSatish Balay b->roworiented = PETSC_FALSE; 631a30f8f8cSSatish Balay while (1) { 632a30f8f8cSSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 633a30f8f8cSSatish Balay if (!flg) break; 634a30f8f8cSSatish Balay 635a30f8f8cSSatish Balay for (i=0; i<n;) { 636a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 637a30f8f8cSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 638a30f8f8cSSatish Balay if (j < n) ncols = j-i; 639a30f8f8cSSatish Balay else ncols = n-i; 640a30f8f8cSSatish Balay ierr = MatSetValuesBlocked_MPISBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 641a30f8f8cSSatish Balay i = j; 642a30f8f8cSSatish Balay } 643a30f8f8cSSatish Balay } 644a30f8f8cSSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 645a30f8f8cSSatish Balay baij->roworiented = r1; 646a30f8f8cSSatish Balay a->roworiented = r2; 647a30f8f8cSSatish Balay b->roworiented = r3; 648a30f8f8cSSatish Balay } 649a30f8f8cSSatish Balay 650a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 651a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 652a30f8f8cSSatish Balay 653a30f8f8cSSatish Balay /* determine if any processor has disassembled, if so we must 654a30f8f8cSSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 655a30f8f8cSSatish Balay /* 656a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that 657a30f8f8cSSatish Balay no processor disassembled thus we can skip this stuff 658a30f8f8cSSatish Balay */ 659a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 660a30f8f8cSSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 661a30f8f8cSSatish Balay if (mat->was_assembled && !other_disassembled) { 662c8407628SSatish Balay ierr = DisAssemble_MPISBAIJ(mat);CHKERRQ(ierr); 663a30f8f8cSSatish Balay } 664a30f8f8cSSatish Balay } 665a30f8f8cSSatish Balay 666a30f8f8cSSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 667a30f8f8cSSatish Balay ierr = MatSetUpMultiply_MPISBAIJ(mat);CHKERRQ(ierr); 668a30f8f8cSSatish Balay } 669a30f8f8cSSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 670a30f8f8cSSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 671a30f8f8cSSatish Balay 672a30f8f8cSSatish Balay #if defined(PETSC_USE_BOPT_g) 673a30f8f8cSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 674a30f8f8cSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPISBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 675a30f8f8cSSatish Balay baij->ht_total_ct = 0; 676a30f8f8cSSatish Balay baij->ht_insert_ct = 0; 677a30f8f8cSSatish Balay } 678a30f8f8cSSatish Balay #endif 679a30f8f8cSSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 680c8407628SSatish Balay ierr = MatCreateHashTable_MPISBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 681a30f8f8cSSatish Balay mat->ops->setvalues = MatSetValues_MPISBAIJ_HT; 682a30f8f8cSSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPISBAIJ_HT; 683a30f8f8cSSatish Balay } 684a30f8f8cSSatish Balay 685a30f8f8cSSatish Balay if (baij->rowvalues) { 686a30f8f8cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 687a30f8f8cSSatish Balay baij->rowvalues = 0; 688a30f8f8cSSatish Balay } 689a30f8f8cSSatish Balay PetscFunctionReturn(0); 690a30f8f8cSSatish Balay } 691a30f8f8cSSatish Balay 692a30f8f8cSSatish Balay #undef __FUNC__ 693a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ_ASCIIorDraworSocket" 694a30f8f8cSSatish Balay static int MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 695a30f8f8cSSatish Balay { 696a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 697a30f8f8cSSatish Balay int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 698a30f8f8cSSatish Balay PetscTruth isascii,isdraw; 69965d70643SHong Zhang Viewer sviewer; 700a30f8f8cSSatish Balay 701a30f8f8cSSatish Balay PetscFunctionBegin; 702a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 703a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 704a30f8f8cSSatish Balay if (isascii) { 705a30f8f8cSSatish Balay ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 706a30f8f8cSSatish Balay if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 707a30f8f8cSSatish Balay MatInfo info; 708a30f8f8cSSatish Balay ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 709a30f8f8cSSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 710a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 711a30f8f8cSSatish Balay rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 712a30f8f8cSSatish Balay baij->bs,(int)info.memory);CHKERRQ(ierr); 713a30f8f8cSSatish Balay ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 714a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 715a30f8f8cSSatish Balay ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 716a30f8f8cSSatish Balay ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 717a30f8f8cSSatish Balay ierr = ViewerFlush(viewer);CHKERRQ(ierr); 718a30f8f8cSSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 719a30f8f8cSSatish Balay PetscFunctionReturn(0); 720a30f8f8cSSatish Balay } else if (format == VIEWER_FORMAT_ASCII_INFO) { 721a30f8f8cSSatish Balay ierr = ViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 722a30f8f8cSSatish Balay PetscFunctionReturn(0); 723a30f8f8cSSatish Balay } 724a30f8f8cSSatish Balay } 725a30f8f8cSSatish Balay 726a30f8f8cSSatish Balay if (isdraw) { 727a30f8f8cSSatish Balay Draw draw; 728a30f8f8cSSatish Balay PetscTruth isnull; 729a30f8f8cSSatish Balay ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 730a30f8f8cSSatish Balay ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 731a30f8f8cSSatish Balay } 732a30f8f8cSSatish Balay 733a30f8f8cSSatish Balay if (size == 1) { 734a30f8f8cSSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 735a30f8f8cSSatish Balay } else { 736a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */ 737a30f8f8cSSatish Balay Mat A; 73865d70643SHong Zhang Mat_SeqSBAIJ *Aloc; 73965d70643SHong Zhang Mat_SeqBAIJ *Bloc; 740a30f8f8cSSatish Balay int M = baij->M,N = baij->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 741a30f8f8cSSatish Balay MatScalar *a; 742a30f8f8cSSatish Balay 743a30f8f8cSSatish Balay if (!rank) { 744bc0ba53dSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 745a30f8f8cSSatish Balay } else { 746f65c83cfSHong Zhang ierr = MatCreateMPISBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 747a30f8f8cSSatish Balay } 748a30f8f8cSSatish Balay PLogObjectParent(mat,A); 749a30f8f8cSSatish Balay 750a30f8f8cSSatish Balay /* copy over the A part */ 75165d70643SHong Zhang Aloc = (Mat_SeqSBAIJ*)baij->A->data; 752a30f8f8cSSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 753a30f8f8cSSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 754a30f8f8cSSatish Balay 755a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 756a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 757a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 758a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 759a30f8f8cSSatish Balay col = (baij->cstart+aj[j])*bs; 760a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 761a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 762a30f8f8cSSatish Balay col++; a += bs; 763a30f8f8cSSatish Balay } 764a30f8f8cSSatish Balay } 765a30f8f8cSSatish Balay } 766a30f8f8cSSatish Balay /* copy over the B part */ 76765d70643SHong Zhang Bloc = (Mat_SeqBAIJ*)baij->B->data; 76865d70643SHong Zhang ai = Bloc->i; aj = Bloc->j; a = Bloc->a; 769a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 770a30f8f8cSSatish Balay rvals[0] = bs*(baij->rstart + i); 771a30f8f8cSSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 772a30f8f8cSSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 773a30f8f8cSSatish Balay col = baij->garray[aj[j]]*bs; 774a30f8f8cSSatish Balay for (k=0; k<bs; k++) { 775a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 776a30f8f8cSSatish Balay col++; a += bs; 777a30f8f8cSSatish Balay } 778a30f8f8cSSatish Balay } 779a30f8f8cSSatish Balay } 780a30f8f8cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 781a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 782a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 783a30f8f8cSSatish Balay /* 784a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are 785a30f8f8cSSatish Balay synchronized across all processors that share the Draw object 786a30f8f8cSSatish Balay */ 787a30f8f8cSSatish Balay ierr = ViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 78865d70643SHong Zhang if (!rank) { 789a30f8f8cSSatish Balay ierr = MatView(((Mat_MPISBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 790a30f8f8cSSatish Balay } 79165d70643SHong Zhang ierr = ViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 792a30f8f8cSSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 793a30f8f8cSSatish Balay } 794a30f8f8cSSatish Balay PetscFunctionReturn(0); 795a30f8f8cSSatish Balay } 796a30f8f8cSSatish Balay 797a30f8f8cSSatish Balay #undef __FUNC__ 798a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatView_MPISBAIJ" 799a30f8f8cSSatish Balay int MatView_MPISBAIJ(Mat mat,Viewer viewer) 800a30f8f8cSSatish Balay { 801a30f8f8cSSatish Balay int ierr; 802a30f8f8cSSatish Balay PetscTruth isascii,isdraw,issocket,isbinary; 803a30f8f8cSSatish Balay 804a30f8f8cSSatish Balay PetscFunctionBegin; 805a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 806a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 807a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,SOCKET_VIEWER,&issocket);CHKERRQ(ierr); 808a30f8f8cSSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 809a30f8f8cSSatish Balay if (isascii || isdraw || issocket || isbinary) { 810a30f8f8cSSatish Balay ierr = MatView_MPISBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 811a30f8f8cSSatish Balay } else { 812a30f8f8cSSatish Balay SETERRQ1(1,1,"Viewer type %s not supported by MPISBAIJ matrices",((PetscObject)viewer)->type_name); 813a30f8f8cSSatish Balay } 814a30f8f8cSSatish Balay PetscFunctionReturn(0); 815a30f8f8cSSatish Balay } 816a30f8f8cSSatish Balay 817a30f8f8cSSatish Balay #undef __FUNC__ 818a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDestroy_MPISBAIJ" 819a30f8f8cSSatish Balay int MatDestroy_MPISBAIJ(Mat mat) 820a30f8f8cSSatish Balay { 821a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 822a30f8f8cSSatish Balay int ierr; 823a30f8f8cSSatish Balay 824a30f8f8cSSatish Balay PetscFunctionBegin; 825a30f8f8cSSatish Balay 826a30f8f8cSSatish Balay if (mat->mapping) { 827a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 828a30f8f8cSSatish Balay } 829a30f8f8cSSatish Balay if (mat->bmapping) { 830a30f8f8cSSatish Balay ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 831a30f8f8cSSatish Balay } 832a30f8f8cSSatish Balay if (mat->rmap) { 833a30f8f8cSSatish Balay ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 834a30f8f8cSSatish Balay } 835a30f8f8cSSatish Balay if (mat->cmap) { 836a30f8f8cSSatish Balay ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 837a30f8f8cSSatish Balay } 838a30f8f8cSSatish Balay #if defined(PETSC_USE_LOG) 839a30f8f8cSSatish Balay PLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",baij->M,baij->N); 840a30f8f8cSSatish Balay #endif 841a30f8f8cSSatish Balay 842a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 843a30f8f8cSSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 844a30f8f8cSSatish Balay 845a30f8f8cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 846a30f8f8cSSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 847a30f8f8cSSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 848a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 849a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 850a30f8f8cSSatish Balay #else 851a30f8f8cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 852a30f8f8cSSatish Balay #endif 853a30f8f8cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 854a30f8f8cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 855a30f8f8cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 856a30f8f8cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 857a30f8f8cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 858a30f8f8cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 859a30f8f8cSSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 860a30f8f8cSSatish Balay if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 861a30f8f8cSSatish Balay #endif 862a30f8f8cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 863a30f8f8cSSatish Balay PLogObjectDestroy(mat); 864a30f8f8cSSatish Balay PetscHeaderDestroy(mat); 865a30f8f8cSSatish Balay PetscFunctionReturn(0); 866a30f8f8cSSatish Balay } 867a30f8f8cSSatish Balay 868a30f8f8cSSatish Balay #undef __FUNC__ 869a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMult_MPISBAIJ" 870a30f8f8cSSatish Balay int MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy) 871a30f8f8cSSatish Balay { 872a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 873a30f8f8cSSatish Balay int ierr,nt; 874a30f8f8cSSatish Balay 875a30f8f8cSSatish Balay PetscFunctionBegin; 876a30f8f8cSSatish Balay ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 877a30f8f8cSSatish Balay if (nt != a->n) { 878a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 879a30f8f8cSSatish Balay } 880a30f8f8cSSatish Balay ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 881a30f8f8cSSatish Balay if (nt != a->m) { 882a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 883a30f8f8cSSatish Balay } 88465d70643SHong Zhang 885b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 886b941877fSHong Zhang /* do diagonal part */ 887b941877fSHong Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 888b941877fSHong Zhang /* do supperdiagonal part */ 889b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 890b941877fSHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 891b941877fSHong Zhang /* do subdiagonal part */ 892b941877fSHong Zhang ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 893b941877fSHong Zhang ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 894b941877fSHong Zhang ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 89565d70643SHong Zhang 896a30f8f8cSSatish Balay PetscFunctionReturn(0); 897a30f8f8cSSatish Balay } 898a30f8f8cSSatish Balay 899a30f8f8cSSatish Balay #undef __FUNC__ 900a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultAdd_MPISBAIJ" 901a30f8f8cSSatish Balay int MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 902a30f8f8cSSatish Balay { 903de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 904aa482183SHong Zhang int ierr; 905a30f8f8cSSatish Balay 906a30f8f8cSSatish Balay PetscFunctionBegin; 907b941877fSHong Zhang ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 908b941877fSHong Zhang /* do diagonal part */ 909b941877fSHong Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 910b941877fSHong Zhang /* do supperdiagonal part */ 911b941877fSHong Zhang ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 912de8b6608SHong Zhang ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 913de8b6608SHong Zhang 914b941877fSHong Zhang /* do subdiagonal part */ 915a30f8f8cSSatish Balay ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 916a30f8f8cSSatish Balay ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 917a30f8f8cSSatish Balay ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 918aa482183SHong Zhang 919a30f8f8cSSatish Balay PetscFunctionReturn(0); 920a30f8f8cSSatish Balay } 921a30f8f8cSSatish Balay 922a30f8f8cSSatish Balay #undef __FUNC__ 923a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTranspose_MPISBAIJ" 924a30f8f8cSSatish Balay int MatMultTranspose_MPISBAIJ(Mat A,Vec xx,Vec yy) 925a30f8f8cSSatish Balay { 926a30f8f8cSSatish Balay PetscFunctionBegin; 927f3566a2aSHong Zhang SETERRQ(1,1,"Matrix is symmetric. Call MatMult()."); 92896e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 929a30f8f8cSSatish Balay } 930a30f8f8cSSatish Balay 931a30f8f8cSSatish Balay #undef __FUNC__ 932a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMultTransposeAdd_MPISBAIJ" 933a30f8f8cSSatish Balay int MatMultTransposeAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 934a30f8f8cSSatish Balay { 935a30f8f8cSSatish Balay PetscFunctionBegin; 936f3566a2aSHong Zhang SETERRQ(1,1,"Matrix is symmetric. Call MatMultAdd()."); 93796e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 938a30f8f8cSSatish Balay } 939a30f8f8cSSatish Balay 940a30f8f8cSSatish Balay /* 941a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the 942a30f8f8cSSatish Balay diagonal block 943a30f8f8cSSatish Balay */ 944a30f8f8cSSatish Balay #undef __FUNC__ 945a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonal_MPISBAIJ" 946a30f8f8cSSatish Balay int MatGetDiagonal_MPISBAIJ(Mat A,Vec v) 947a30f8f8cSSatish Balay { 948a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 949a30f8f8cSSatish Balay int ierr; 950a30f8f8cSSatish Balay 951a30f8f8cSSatish Balay PetscFunctionBegin; 952a30f8f8cSSatish Balay /* if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); */ 953a30f8f8cSSatish Balay ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 954a30f8f8cSSatish Balay PetscFunctionReturn(0); 955a30f8f8cSSatish Balay } 956a30f8f8cSSatish Balay 957a30f8f8cSSatish Balay #undef __FUNC__ 958a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatScale_MPISBAIJ" 959a30f8f8cSSatish Balay int MatScale_MPISBAIJ(Scalar *aa,Mat A) 960a30f8f8cSSatish Balay { 961a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 962a30f8f8cSSatish Balay int ierr; 963a30f8f8cSSatish Balay 964a30f8f8cSSatish Balay PetscFunctionBegin; 965a30f8f8cSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 966a30f8f8cSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 967a30f8f8cSSatish Balay PetscFunctionReturn(0); 968a30f8f8cSSatish Balay } 969a30f8f8cSSatish Balay 970a30f8f8cSSatish Balay #undef __FUNC__ 971a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetSize_MPISBAIJ" 972a30f8f8cSSatish Balay int MatGetSize_MPISBAIJ(Mat matin,int *m,int *n) 973a30f8f8cSSatish Balay { 974a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 975a30f8f8cSSatish Balay 976a30f8f8cSSatish Balay PetscFunctionBegin; 977a30f8f8cSSatish Balay if (m) *m = mat->M; 978a30f8f8cSSatish Balay if (n) *n = mat->N; 979a30f8f8cSSatish Balay PetscFunctionReturn(0); 980a30f8f8cSSatish Balay } 981a30f8f8cSSatish Balay 982a30f8f8cSSatish Balay #undef __FUNC__ 983a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetLocalSize_MPISBAIJ" 984a30f8f8cSSatish Balay int MatGetLocalSize_MPISBAIJ(Mat matin,int *m,int *n) 985a30f8f8cSSatish Balay { 986a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 987a30f8f8cSSatish Balay 988a30f8f8cSSatish Balay PetscFunctionBegin; 989a30f8f8cSSatish Balay *m = mat->m; *n = mat->n; 990a30f8f8cSSatish Balay PetscFunctionReturn(0); 991a30f8f8cSSatish Balay } 992a30f8f8cSSatish Balay 993a30f8f8cSSatish Balay #undef __FUNC__ 994a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetOwnershipRange_MPISBAIJ" 995a30f8f8cSSatish Balay int MatGetOwnershipRange_MPISBAIJ(Mat matin,int *m,int *n) 996a30f8f8cSSatish Balay { 997a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 998a30f8f8cSSatish Balay 999a30f8f8cSSatish Balay PetscFunctionBegin; 1000a30f8f8cSSatish Balay if (m) *m = mat->rstart*mat->bs; 1001a30f8f8cSSatish Balay if (n) *n = mat->rend*mat->bs; 1002a30f8f8cSSatish Balay PetscFunctionReturn(0); 1003a30f8f8cSSatish Balay } 1004a30f8f8cSSatish Balay 1005a30f8f8cSSatish Balay #undef __FUNC__ 1006a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetRow_MPISBAIJ" 1007a30f8f8cSSatish Balay int MatGetRow_MPISBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1008a30f8f8cSSatish Balay { 1009a30f8f8cSSatish Balay Mat_MPISBAIJ *mat = (Mat_MPISBAIJ*)matin->data; 1010a30f8f8cSSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1011a30f8f8cSSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1012a30f8f8cSSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1013a30f8f8cSSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1014a30f8f8cSSatish Balay 1015a30f8f8cSSatish Balay PetscFunctionBegin; 1016a30f8f8cSSatish Balay if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1017a30f8f8cSSatish Balay mat->getrowactive = PETSC_TRUE; 1018a30f8f8cSSatish Balay 1019a30f8f8cSSatish Balay if (!mat->rowvalues && (idx || v)) { 1020a30f8f8cSSatish Balay /* 1021a30f8f8cSSatish Balay allocate enough space to hold information from the longest row. 1022a30f8f8cSSatish Balay */ 1023a30f8f8cSSatish Balay Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ*)mat->A->data; 1024a30f8f8cSSatish Balay Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ*)mat->B->data; 1025a30f8f8cSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1026a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 1027a30f8f8cSSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; /* row length */ 1028a30f8f8cSSatish Balay if (max < tmp) { max = tmp; } 1029a30f8f8cSSatish Balay } 1030a30f8f8cSSatish Balay mat->rowvalues = (Scalar*)PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1031a30f8f8cSSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1032a30f8f8cSSatish Balay } 1033a30f8f8cSSatish Balay 1034a30f8f8cSSatish Balay if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1035a30f8f8cSSatish Balay lrow = row - brstart; /* local row index */ 1036a30f8f8cSSatish Balay 1037a30f8f8cSSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1038a30f8f8cSSatish Balay if (!v) {pvA = 0; pvB = 0;} 1039a30f8f8cSSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1040a30f8f8cSSatish Balay ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1041a30f8f8cSSatish Balay ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1042a30f8f8cSSatish Balay nztot = nzA + nzB; 1043a30f8f8cSSatish Balay 1044a30f8f8cSSatish Balay cmap = mat->garray; 1045a30f8f8cSSatish Balay if (v || idx) { 1046a30f8f8cSSatish Balay if (nztot) { 1047a30f8f8cSSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1048a30f8f8cSSatish Balay int imark = -1; 1049a30f8f8cSSatish Balay if (v) { 1050a30f8f8cSSatish Balay *v = v_p = mat->rowvalues; 1051a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1052a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1053a30f8f8cSSatish Balay else break; 1054a30f8f8cSSatish Balay } 1055a30f8f8cSSatish Balay imark = i; 1056a30f8f8cSSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1057a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1058a30f8f8cSSatish Balay } 1059a30f8f8cSSatish Balay if (idx) { 1060a30f8f8cSSatish Balay *idx = idx_p = mat->rowindices; 1061a30f8f8cSSatish Balay if (imark > -1) { 1062a30f8f8cSSatish Balay for (i=0; i<imark; i++) { 1063a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1064a30f8f8cSSatish Balay } 1065a30f8f8cSSatish Balay } else { 1066a30f8f8cSSatish Balay for (i=0; i<nzB; i++) { 1067a30f8f8cSSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1068a30f8f8cSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1069a30f8f8cSSatish Balay else break; 1070a30f8f8cSSatish Balay } 1071a30f8f8cSSatish Balay imark = i; 1072a30f8f8cSSatish Balay } 1073a30f8f8cSSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1074a30f8f8cSSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1075a30f8f8cSSatish Balay } 1076a30f8f8cSSatish Balay } else { 1077a30f8f8cSSatish Balay if (idx) *idx = 0; 1078a30f8f8cSSatish Balay if (v) *v = 0; 1079a30f8f8cSSatish Balay } 1080a30f8f8cSSatish Balay } 1081a30f8f8cSSatish Balay *nz = nztot; 1082a30f8f8cSSatish Balay ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1083a30f8f8cSSatish Balay ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1084a30f8f8cSSatish Balay PetscFunctionReturn(0); 1085a30f8f8cSSatish Balay } 1086a30f8f8cSSatish Balay 1087a30f8f8cSSatish Balay #undef __FUNC__ 1088a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatRestoreRow_MPISBAIJ" 1089a30f8f8cSSatish Balay int MatRestoreRow_MPISBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1090a30f8f8cSSatish Balay { 1091a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1092a30f8f8cSSatish Balay 1093a30f8f8cSSatish Balay PetscFunctionBegin; 1094a30f8f8cSSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1095a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1096a30f8f8cSSatish Balay } 1097a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE; 1098a30f8f8cSSatish Balay PetscFunctionReturn(0); 1099a30f8f8cSSatish Balay } 1100a30f8f8cSSatish Balay 1101a30f8f8cSSatish Balay #undef __FUNC__ 1102a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetBlockSize_MPISBAIJ" 1103a30f8f8cSSatish Balay int MatGetBlockSize_MPISBAIJ(Mat mat,int *bs) 1104a30f8f8cSSatish Balay { 1105a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1106a30f8f8cSSatish Balay 1107a30f8f8cSSatish Balay PetscFunctionBegin; 1108a30f8f8cSSatish Balay *bs = baij->bs; 1109a30f8f8cSSatish Balay PetscFunctionReturn(0); 1110a30f8f8cSSatish Balay } 1111a30f8f8cSSatish Balay 1112a30f8f8cSSatish Balay #undef __FUNC__ 1113a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroEntries_MPISBAIJ" 1114a30f8f8cSSatish Balay int MatZeroEntries_MPISBAIJ(Mat A) 1115a30f8f8cSSatish Balay { 1116a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1117a30f8f8cSSatish Balay int ierr; 1118a30f8f8cSSatish Balay 1119a30f8f8cSSatish Balay PetscFunctionBegin; 1120a30f8f8cSSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1121a30f8f8cSSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 1122a30f8f8cSSatish Balay PetscFunctionReturn(0); 1123a30f8f8cSSatish Balay } 1124a30f8f8cSSatish Balay 1125a30f8f8cSSatish Balay #undef __FUNC__ 1126a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetInfo_MPISBAIJ" 1127a30f8f8cSSatish Balay int MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 1128a30f8f8cSSatish Balay { 1129a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)matin->data; 1130a30f8f8cSSatish Balay Mat A = a->A,B = a->B; 1131a30f8f8cSSatish Balay int ierr; 1132a30f8f8cSSatish Balay PetscReal isend[5],irecv[5]; 1133a30f8f8cSSatish Balay 1134a30f8f8cSSatish Balay PetscFunctionBegin; 1135a30f8f8cSSatish Balay info->block_size = (double)a->bs; 1136a30f8f8cSSatish Balay ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 1137a30f8f8cSSatish Balay isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1138a30f8f8cSSatish Balay isend[3] = info->memory; isend[4] = info->mallocs; 1139a30f8f8cSSatish Balay ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 1140a30f8f8cSSatish Balay isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1141a30f8f8cSSatish Balay isend[3] += info->memory; isend[4] += info->mallocs; 1142a30f8f8cSSatish Balay if (flag == MAT_LOCAL) { 1143a30f8f8cSSatish Balay info->nz_used = isend[0]; 1144a30f8f8cSSatish Balay info->nz_allocated = isend[1]; 1145a30f8f8cSSatish Balay info->nz_unneeded = isend[2]; 1146a30f8f8cSSatish Balay info->memory = isend[3]; 1147a30f8f8cSSatish Balay info->mallocs = isend[4]; 1148a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1149a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 1150a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1151a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1152a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1153a30f8f8cSSatish Balay info->memory = irecv[3]; 1154a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1155a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1156a30f8f8cSSatish Balay ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 1157a30f8f8cSSatish Balay info->nz_used = irecv[0]; 1158a30f8f8cSSatish Balay info->nz_allocated = irecv[1]; 1159a30f8f8cSSatish Balay info->nz_unneeded = irecv[2]; 1160a30f8f8cSSatish Balay info->memory = irecv[3]; 1161a30f8f8cSSatish Balay info->mallocs = irecv[4]; 1162a30f8f8cSSatish Balay } else { 1163a30f8f8cSSatish Balay SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag); 1164a30f8f8cSSatish Balay } 1165a30f8f8cSSatish Balay info->rows_global = (double)a->M; 1166a30f8f8cSSatish Balay info->columns_global = (double)a->N; 1167a30f8f8cSSatish Balay info->rows_local = (double)a->m; 1168a30f8f8cSSatish Balay info->columns_local = (double)a->N; 1169a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 1170a30f8f8cSSatish Balay info->fill_ratio_needed = 0; 1171a30f8f8cSSatish Balay info->factor_mallocs = 0; 1172a30f8f8cSSatish Balay PetscFunctionReturn(0); 1173a30f8f8cSSatish Balay } 1174a30f8f8cSSatish Balay 1175a30f8f8cSSatish Balay #undef __FUNC__ 1176a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetOption_MPISBAIJ" 1177a30f8f8cSSatish Balay int MatSetOption_MPISBAIJ(Mat A,MatOption op) 1178a30f8f8cSSatish Balay { 1179a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1180a30f8f8cSSatish Balay int ierr; 1181a30f8f8cSSatish Balay 1182a30f8f8cSSatish Balay PetscFunctionBegin; 1183a30f8f8cSSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 1184a30f8f8cSSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 1185a30f8f8cSSatish Balay op == MAT_COLUMNS_UNSORTED || 1186a30f8f8cSSatish Balay op == MAT_COLUMNS_SORTED || 1187a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 1188a30f8f8cSSatish Balay op == MAT_KEEP_ZEROED_ROWS || 1189a30f8f8cSSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 1190a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1191a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1192a30f8f8cSSatish Balay } else if (op == MAT_ROW_ORIENTED) { 1193a30f8f8cSSatish Balay a->roworiented = PETSC_TRUE; 1194a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1195a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1196a30f8f8cSSatish Balay } else if (op == MAT_ROWS_SORTED || 1197a30f8f8cSSatish Balay op == MAT_ROWS_UNSORTED || 1198a30f8f8cSSatish Balay op == MAT_SYMMETRIC || 1199a30f8f8cSSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1200a30f8f8cSSatish Balay op == MAT_YES_NEW_DIAGONALS || 1201a30f8f8cSSatish Balay op == MAT_USE_HASH_TABLE) { 1202a30f8f8cSSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 1203a30f8f8cSSatish Balay } else if (op == MAT_COLUMN_ORIENTED) { 1204a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE; 1205a30f8f8cSSatish Balay ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 1206a30f8f8cSSatish Balay ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1207a30f8f8cSSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 1208a30f8f8cSSatish Balay a->donotstash = PETSC_TRUE; 1209a30f8f8cSSatish Balay } else if (op == MAT_NO_NEW_DIAGONALS) { 1210a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1211a30f8f8cSSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1212a30f8f8cSSatish Balay a->ht_flag = PETSC_TRUE; 1213a30f8f8cSSatish Balay } else { 1214a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1215a30f8f8cSSatish Balay } 1216a30f8f8cSSatish Balay PetscFunctionReturn(0); 1217a30f8f8cSSatish Balay } 1218a30f8f8cSSatish Balay 1219a30f8f8cSSatish Balay #undef __FUNC__ 1220a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatTranspose_MPISBAIJ(" 1221a30f8f8cSSatish Balay int MatTranspose_MPISBAIJ(Mat A,Mat *matout) 1222a30f8f8cSSatish Balay { 1223a30f8f8cSSatish Balay PetscFunctionBegin; 1224f3566a2aSHong Zhang SETERRQ(1,1,"Matrix is symmetric. MatTranspose() should not be called"); 122596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 1226a30f8f8cSSatish Balay } 1227a30f8f8cSSatish Balay 1228a30f8f8cSSatish Balay #undef __FUNC__ 1229a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDiagonalScale_MPISBAIJ" 1230a30f8f8cSSatish Balay int MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr) 1231a30f8f8cSSatish Balay { 1232a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ*)mat->data; 1233a30f8f8cSSatish Balay Mat a = baij->A,b = baij->B; 1234a30f8f8cSSatish Balay int ierr,s1,s2,s3; 1235a30f8f8cSSatish Balay 1236a30f8f8cSSatish Balay PetscFunctionBegin; 1237a30f8f8cSSatish Balay if (ll != rr) { 1238a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"For symmetric format, left and right scaling vectors must be same\n"); 1239a30f8f8cSSatish Balay } 1240a30f8f8cSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 1241a30f8f8cSSatish Balay if (rr) { 1242a30f8f8cSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1243a30f8f8cSSatish Balay if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 1244a30f8f8cSSatish Balay /* Overlap communication with computation. */ 1245a30f8f8cSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1246a30f8f8cSSatish Balay /*} if (ll) { */ 1247a30f8f8cSSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1248a30f8f8cSSatish Balay if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 1249a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 1250a30f8f8cSSatish Balay /* } */ 1251a30f8f8cSSatish Balay /* scale the diagonal block */ 1252a30f8f8cSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 1253a30f8f8cSSatish Balay 1254a30f8f8cSSatish Balay /* if (rr) { */ 1255a30f8f8cSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1256a30f8f8cSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1257a30f8f8cSSatish Balay ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 1258a30f8f8cSSatish Balay } 1259a30f8f8cSSatish Balay 1260a30f8f8cSSatish Balay PetscFunctionReturn(0); 1261a30f8f8cSSatish Balay } 1262a30f8f8cSSatish Balay 1263a30f8f8cSSatish Balay #undef __FUNC__ 1264a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatZeroRows_MPISBAIJ" 1265a30f8f8cSSatish Balay int MatZeroRows_MPISBAIJ(Mat A,IS is,Scalar *diag) 1266a30f8f8cSSatish Balay { 1267a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ*)A->data; 1268a30f8f8cSSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1269a30f8f8cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 1270a30f8f8cSSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1271a30f8f8cSSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1272a30f8f8cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 1273a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1274a30f8f8cSSatish Balay MPI_Request *send_waits,*recv_waits; 1275a30f8f8cSSatish Balay MPI_Status recv_status,*send_status; 1276a30f8f8cSSatish Balay IS istmp; 1277a30f8f8cSSatish Balay 1278a30f8f8cSSatish Balay PetscFunctionBegin; 1279a30f8f8cSSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 1280a30f8f8cSSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 1281a30f8f8cSSatish Balay 1282a30f8f8cSSatish Balay /* first count number of contributors to each processor */ 1283a30f8f8cSSatish Balay nprocs = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(nprocs); 1284a30f8f8cSSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1285a30f8f8cSSatish Balay procs = nprocs + size; 1286a30f8f8cSSatish Balay owner = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 1287a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1288a30f8f8cSSatish Balay idx = rows[i]; 1289a30f8f8cSSatish Balay found = 0; 1290a30f8f8cSSatish Balay for (j=0; j<size; j++) { 1291a30f8f8cSSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1292a30f8f8cSSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 1293a30f8f8cSSatish Balay } 1294a30f8f8cSSatish Balay } 1295a30f8f8cSSatish Balay if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 1296a30f8f8cSSatish Balay } 1297a30f8f8cSSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 1298a30f8f8cSSatish Balay 1299a30f8f8cSSatish Balay /* inform other processors of number of messages and max length*/ 1300a30f8f8cSSatish Balay work = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(work); 1301a30f8f8cSSatish Balay ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 1302a30f8f8cSSatish Balay nmax = work[rank]; 1303a30f8f8cSSatish Balay nrecvs = work[size+rank]; 1304a30f8f8cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 1305a30f8f8cSSatish Balay 1306a30f8f8cSSatish Balay /* post receives: */ 1307a30f8f8cSSatish Balay rvalues = (int*)PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1308a30f8f8cSSatish Balay recv_waits = (MPI_Request*)PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 1309a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1310a30f8f8cSSatish Balay ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 1311a30f8f8cSSatish Balay } 1312a30f8f8cSSatish Balay 1313a30f8f8cSSatish Balay /* do sends: 1314a30f8f8cSSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 1315a30f8f8cSSatish Balay the ith processor 1316a30f8f8cSSatish Balay */ 1317a30f8f8cSSatish Balay svalues = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(svalues); 1318a30f8f8cSSatish Balay send_waits = (MPI_Request*)PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 1319a30f8f8cSSatish Balay starts = (int*)PetscMalloc((size+1)*sizeof(int));CHKPTRQ(starts); 1320a30f8f8cSSatish Balay starts[0] = 0; 1321a30f8f8cSSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1322a30f8f8cSSatish Balay for (i=0; i<N; i++) { 1323a30f8f8cSSatish Balay svalues[starts[owner[i]]++] = rows[i]; 1324a30f8f8cSSatish Balay } 1325a30f8f8cSSatish Balay ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 1326a30f8f8cSSatish Balay 1327a30f8f8cSSatish Balay starts[0] = 0; 1328a30f8f8cSSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 1329a30f8f8cSSatish Balay count = 0; 1330a30f8f8cSSatish Balay for (i=0; i<size; i++) { 1331a30f8f8cSSatish Balay if (procs[i]) { 1332a30f8f8cSSatish Balay ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 1333a30f8f8cSSatish Balay } 1334a30f8f8cSSatish Balay } 1335a30f8f8cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 1336a30f8f8cSSatish Balay 1337a30f8f8cSSatish Balay base = owners[rank]*bs; 1338a30f8f8cSSatish Balay 1339a30f8f8cSSatish Balay /* wait on receives */ 1340a30f8f8cSSatish Balay lens = (int*)PetscMalloc(2*(nrecvs+1)*sizeof(int));CHKPTRQ(lens); 1341a30f8f8cSSatish Balay source = lens + nrecvs; 1342a30f8f8cSSatish Balay count = nrecvs; slen = 0; 1343a30f8f8cSSatish Balay while (count) { 1344a30f8f8cSSatish Balay ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 1345a30f8f8cSSatish Balay /* unpack receives into our local space */ 1346a30f8f8cSSatish Balay ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 1347a30f8f8cSSatish Balay source[imdex] = recv_status.MPI_SOURCE; 1348a30f8f8cSSatish Balay lens[imdex] = n; 1349a30f8f8cSSatish Balay slen += n; 1350a30f8f8cSSatish Balay count--; 1351a30f8f8cSSatish Balay } 1352a30f8f8cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1353a30f8f8cSSatish Balay 1354a30f8f8cSSatish Balay /* move the data into the send scatter */ 1355a30f8f8cSSatish Balay lrows = (int*)PetscMalloc((slen+1)*sizeof(int));CHKPTRQ(lrows); 1356a30f8f8cSSatish Balay count = 0; 1357a30f8f8cSSatish Balay for (i=0; i<nrecvs; i++) { 1358a30f8f8cSSatish Balay values = rvalues + i*nmax; 1359a30f8f8cSSatish Balay for (j=0; j<lens[i]; j++) { 1360a30f8f8cSSatish Balay lrows[count++] = values[j] - base; 1361a30f8f8cSSatish Balay } 1362a30f8f8cSSatish Balay } 1363a30f8f8cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1364a30f8f8cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1365a30f8f8cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1366a30f8f8cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 1367a30f8f8cSSatish Balay 1368a30f8f8cSSatish Balay /* actually zap the local rows */ 1369a30f8f8cSSatish Balay ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1370a30f8f8cSSatish Balay PLogObjectParent(A,istmp); 1371a30f8f8cSSatish Balay 1372a30f8f8cSSatish Balay /* 1373a30f8f8cSSatish Balay Zero the required rows. If the "diagonal block" of the matrix 1374a30f8f8cSSatish Balay is square and the user wishes to set the diagonal we use seperate 1375a30f8f8cSSatish Balay code so that MatSetValues() is not called for each diagonal allocating 1376a30f8f8cSSatish Balay new memory, thus calling lots of mallocs and slowing things down. 1377a30f8f8cSSatish Balay 1378a30f8f8cSSatish Balay Contributed by: Mathew Knepley 1379a30f8f8cSSatish Balay */ 1380a30f8f8cSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1381*ff64ff16SBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 1382a30f8f8cSSatish Balay if (diag && (l->A->M == l->A->N)) { 1383a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 1384a30f8f8cSSatish Balay } else if (diag) { 1385a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1386a30f8f8cSSatish Balay if (((Mat_SeqSBAIJ*)l->A->data)->nonew) { 1387a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1388a30f8f8cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1389a30f8f8cSSatish Balay } 1390a30f8f8cSSatish Balay for (i=0; i<slen; i++) { 1391a30f8f8cSSatish Balay row = lrows[i] + rstart_bs; 1392a30f8f8cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1393a30f8f8cSSatish Balay } 1394a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1395a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1396a30f8f8cSSatish Balay } else { 1397a30f8f8cSSatish Balay ierr = MatZeroRows_SeqSBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1398a30f8f8cSSatish Balay } 1399a30f8f8cSSatish Balay 1400a30f8f8cSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1401a30f8f8cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1402a30f8f8cSSatish Balay 1403a30f8f8cSSatish Balay /* wait on sends */ 1404a30f8f8cSSatish Balay if (nsends) { 1405a30f8f8cSSatish Balay send_status = (MPI_Status*)PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1406a30f8f8cSSatish Balay ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1407a30f8f8cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 1408a30f8f8cSSatish Balay } 1409a30f8f8cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1410a30f8f8cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 1411a30f8f8cSSatish Balay 1412a30f8f8cSSatish Balay PetscFunctionReturn(0); 1413a30f8f8cSSatish Balay } 1414a30f8f8cSSatish Balay 1415a30f8f8cSSatish Balay #undef __FUNC__ 1416a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatPrintHelp_MPISBAIJ" 1417a30f8f8cSSatish Balay int MatPrintHelp_MPISBAIJ(Mat A) 1418a30f8f8cSSatish Balay { 1419a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1420a30f8f8cSSatish Balay MPI_Comm comm = A->comm; 1421a30f8f8cSSatish Balay static int called = 0; 1422a30f8f8cSSatish Balay int ierr; 1423a30f8f8cSSatish Balay 1424a30f8f8cSSatish Balay PetscFunctionBegin; 1425a30f8f8cSSatish Balay if (!a->rank) { 1426a30f8f8cSSatish Balay ierr = MatPrintHelp_SeqSBAIJ(a->A);CHKERRQ(ierr); 1427a30f8f8cSSatish Balay } 1428a30f8f8cSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1429a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATMPISBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1430a30f8f8cSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 1431a30f8f8cSSatish Balay PetscFunctionReturn(0); 1432a30f8f8cSSatish Balay } 1433a30f8f8cSSatish Balay 1434a30f8f8cSSatish Balay #undef __FUNC__ 1435a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatSetUnfactored_MPISBAIJ" 1436a30f8f8cSSatish Balay int MatSetUnfactored_MPISBAIJ(Mat A) 1437a30f8f8cSSatish Balay { 1438f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ*)A->data; 1439a30f8f8cSSatish Balay int ierr; 1440a30f8f8cSSatish Balay 1441a30f8f8cSSatish Balay PetscFunctionBegin; 1442a30f8f8cSSatish Balay ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 1443a30f8f8cSSatish Balay PetscFunctionReturn(0); 1444a30f8f8cSSatish Balay } 1445a30f8f8cSSatish Balay 1446a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat,MatDuplicateOption,Mat *); 1447a30f8f8cSSatish Balay 1448a30f8f8cSSatish Balay #undef __FUNC__ 1449a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatEqual_MPISBAIJ" 1450a30f8f8cSSatish Balay int MatEqual_MPISBAIJ(Mat A,Mat B,PetscTruth *flag) 1451a30f8f8cSSatish Balay { 1452a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ*)B->data,*matA = (Mat_MPISBAIJ*)A->data; 1453a30f8f8cSSatish Balay Mat a,b,c,d; 1454a30f8f8cSSatish Balay PetscTruth flg; 1455a30f8f8cSSatish Balay int ierr; 1456a30f8f8cSSatish Balay 1457a30f8f8cSSatish Balay PetscFunctionBegin; 1458a30f8f8cSSatish Balay if (B->type != MATMPISBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 1459a30f8f8cSSatish Balay a = matA->A; b = matA->B; 1460a30f8f8cSSatish Balay c = matB->A; d = matB->B; 1461a30f8f8cSSatish Balay 1462a30f8f8cSSatish Balay ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1463a30f8f8cSSatish Balay if (flg == PETSC_TRUE) { 1464a30f8f8cSSatish Balay ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1465a30f8f8cSSatish Balay } 1466a30f8f8cSSatish Balay ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 1467a30f8f8cSSatish Balay PetscFunctionReturn(0); 1468a30f8f8cSSatish Balay } 1469a30f8f8cSSatish Balay 1470a30f8f8cSSatish Balay /* -------------------------------------------------------------------*/ 1471a30f8f8cSSatish Balay static struct _MatOps MatOps_Values = { 1472a30f8f8cSSatish Balay MatSetValues_MPISBAIJ, 1473a30f8f8cSSatish Balay MatGetRow_MPISBAIJ, 1474a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ, 1475a30f8f8cSSatish Balay MatMult_MPISBAIJ, 1476a30f8f8cSSatish Balay MatMultAdd_MPISBAIJ, 1477a30f8f8cSSatish Balay MatMultTranspose_MPISBAIJ, 1478a30f8f8cSSatish Balay MatMultTransposeAdd_MPISBAIJ, 1479a30f8f8cSSatish Balay 0, 1480a30f8f8cSSatish Balay 0, 1481a30f8f8cSSatish Balay 0, 1482a30f8f8cSSatish Balay 0, 1483a30f8f8cSSatish Balay 0, 1484a30f8f8cSSatish Balay 0, 1485a30f8f8cSSatish Balay 0, 1486a30f8f8cSSatish Balay MatTranspose_MPISBAIJ, 1487a30f8f8cSSatish Balay MatGetInfo_MPISBAIJ, 1488a30f8f8cSSatish Balay MatEqual_MPISBAIJ, 1489a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ, 1490a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ, 1491a30f8f8cSSatish Balay MatNorm_MPISBAIJ, 1492a30f8f8cSSatish Balay MatAssemblyBegin_MPISBAIJ, 1493a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ, 1494a30f8f8cSSatish Balay 0, 1495a30f8f8cSSatish Balay MatSetOption_MPISBAIJ, 1496a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ, 1497a30f8f8cSSatish Balay MatZeroRows_MPISBAIJ, 1498a30f8f8cSSatish Balay 0, 1499a30f8f8cSSatish Balay 0, 1500a30f8f8cSSatish Balay 0, 1501a30f8f8cSSatish Balay 0, 1502a30f8f8cSSatish Balay MatGetSize_MPISBAIJ, 1503a30f8f8cSSatish Balay MatGetLocalSize_MPISBAIJ, 1504a30f8f8cSSatish Balay MatGetOwnershipRange_MPISBAIJ, 1505a30f8f8cSSatish Balay 0, 1506a30f8f8cSSatish Balay 0, 1507a30f8f8cSSatish Balay 0, 1508a30f8f8cSSatish Balay 0, 1509a30f8f8cSSatish Balay MatDuplicate_MPISBAIJ, 1510a30f8f8cSSatish Balay 0, 1511a30f8f8cSSatish Balay 0, 1512a30f8f8cSSatish Balay 0, 1513a30f8f8cSSatish Balay 0, 1514a30f8f8cSSatish Balay 0, 1515a30f8f8cSSatish Balay MatGetSubMatrices_MPISBAIJ, 1516a30f8f8cSSatish Balay MatIncreaseOverlap_MPISBAIJ, 1517a30f8f8cSSatish Balay MatGetValues_MPISBAIJ, 1518a30f8f8cSSatish Balay 0, 1519a30f8f8cSSatish Balay MatPrintHelp_MPISBAIJ, 1520a30f8f8cSSatish Balay MatScale_MPISBAIJ, 1521a30f8f8cSSatish Balay 0, 1522a30f8f8cSSatish Balay 0, 1523a30f8f8cSSatish Balay 0, 1524a30f8f8cSSatish Balay MatGetBlockSize_MPISBAIJ, 1525a30f8f8cSSatish Balay 0, 1526a30f8f8cSSatish Balay 0, 1527a30f8f8cSSatish Balay 0, 1528a30f8f8cSSatish Balay 0, 1529a30f8f8cSSatish Balay 0, 1530a30f8f8cSSatish Balay 0, 1531a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ, 1532a30f8f8cSSatish Balay 0, 1533a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ, 1534a30f8f8cSSatish Balay 0, 1535a30f8f8cSSatish Balay 0, 1536a30f8f8cSSatish Balay 0, 1537a30f8f8cSSatish Balay MatGetMaps_Petsc}; 1538a30f8f8cSSatish Balay 1539a30f8f8cSSatish Balay 1540a30f8f8cSSatish Balay EXTERN_C_BEGIN 1541a30f8f8cSSatish Balay #undef __FUNC__ 1542a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonalBlock_MPISBAIJ" 1543a30f8f8cSSatish Balay int MatGetDiagonalBlock_MPISBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 1544a30f8f8cSSatish Balay { 1545a30f8f8cSSatish Balay PetscFunctionBegin; 1546a30f8f8cSSatish Balay *a = ((Mat_MPISBAIJ *)A->data)->A; 1547a30f8f8cSSatish Balay *iscopy = PETSC_FALSE; 1548a30f8f8cSSatish Balay PetscFunctionReturn(0); 1549a30f8f8cSSatish Balay } 1550a30f8f8cSSatish Balay EXTERN_C_END 1551a30f8f8cSSatish Balay 1552a30f8f8cSSatish Balay #undef __FUNC__ 1553a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatCreateMPISBAIJ" 1554a30f8f8cSSatish Balay /*@C 1555a30f8f8cSSatish Balay MatCreateMPISBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format 1556a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance 1557a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters 1558a30f8f8cSSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1559a30f8f8cSSatish Balay performance can be increased by more than a factor of 50. 1560a30f8f8cSSatish Balay 1561a30f8f8cSSatish Balay Collective on MPI_Comm 1562a30f8f8cSSatish Balay 1563a30f8f8cSSatish Balay Input Parameters: 1564a30f8f8cSSatish Balay + comm - MPI communicator 1565a30f8f8cSSatish Balay . bs - size of blockk 1566a30f8f8cSSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1567a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1568a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax. 1569a30f8f8cSSatish Balay . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1570a30f8f8cSSatish Balay This value should be the same as the local size used in creating the 1571a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax. 1572a30f8f8cSSatish Balay . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1573a30f8f8cSSatish Balay . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1574a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 1575a30f8f8cSSatish Balay submatrix (same for all local rows) 1576a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows 1577a30f8f8cSSatish Balay of the in diagonal portion of the local (possibly different for each block 1578a30f8f8cSSatish Balay row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 1579a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 1580a30f8f8cSSatish Balay submatrix (same for all local rows). 1581a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the 1582a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for 1583a30f8f8cSSatish Balay each block row) or PETSC_NULL. 1584a30f8f8cSSatish Balay 1585a30f8f8cSSatish Balay Output Parameter: 1586a30f8f8cSSatish Balay . A - the matrix 1587a30f8f8cSSatish Balay 1588a30f8f8cSSatish Balay Options Database Keys: 1589a30f8f8cSSatish Balay . -mat_no_unroll - uses code that does not unroll the loops in the 1590a30f8f8cSSatish Balay block calculations (much slower) 1591a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use 1592a30f8f8cSSatish Balay . -mat_mpi - use the parallel matrix data structures even on one processor 1593a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor) 1594a30f8f8cSSatish Balay 1595a30f8f8cSSatish Balay Notes: 1596a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions 1597a30f8f8cSSatish Balay (possibly both). 1598a30f8f8cSSatish Balay 1599a30f8f8cSSatish Balay If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1600a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument. 1601a30f8f8cSSatish Balay 1602a30f8f8cSSatish Balay Storage Information: 1603a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion 1604a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix); 1605a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the 1606a30f8f8cSSatish Balay local matrix (a rectangular submatrix). 1607a30f8f8cSSatish Balay 1608a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of 1609a30f8f8cSSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 1610a30f8f8cSSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 1611a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the 1612a30f8f8cSSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1613a30f8f8cSSatish Balay 1614a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 1615a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11). 1616a30f8f8cSSatish Balay 1617a30f8f8cSSatish Balay .vb 1618a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11 1619a30f8f8cSSatish Balay ------------------- 1620a30f8f8cSSatish Balay row 3 | o o o d d d o o o o o o 1621a30f8f8cSSatish Balay row 4 | o o o d d d o o o o o o 1622a30f8f8cSSatish Balay row 5 | o o o d d d o o o o o o 1623a30f8f8cSSatish Balay ------------------- 1624a30f8f8cSSatish Balay .ve 1625a30f8f8cSSatish Balay 1626a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 1627a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the 1628a30f8f8cSSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 1629a30f8f8cSSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 1630a30f8f8cSSatish Balay 1631a30f8f8cSSatish Balay Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1632a30f8f8cSSatish Balay and o_nz should indicate the number of block nonzeros per row in the o matrix. 1633a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 1634a30f8f8cSSatish Balay one expects d_nz >> o_nz. For large problems you MUST preallocate memory 1635a30f8f8cSSatish Balay or you will get TERRIBLE performance; see the users' manual chapter on 1636a30f8f8cSSatish Balay matrices. 1637a30f8f8cSSatish Balay 1638a30f8f8cSSatish Balay Level: intermediate 1639a30f8f8cSSatish Balay 1640a30f8f8cSSatish Balay .keywords: matrix, block, aij, compressed row, sparse, parallel 1641a30f8f8cSSatish Balay 1642a209d233SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 1643a30f8f8cSSatish Balay @*/ 1644a30f8f8cSSatish Balay 1645a30f8f8cSSatish Balay int MatCreateMPISBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 1646a30f8f8cSSatish Balay { 1647a30f8f8cSSatish Balay Mat B; 1648a30f8f8cSSatish Balay Mat_MPISBAIJ *b; 1649f65c83cfSHong Zhang int ierr,i,sum[1],work[1],mbs,Mbs=PETSC_DECIDE,size; 1650a30f8f8cSSatish Balay PetscTruth flag1,flag2,flg; 1651a30f8f8cSSatish Balay 1652a30f8f8cSSatish Balay PetscFunctionBegin; 1653a30f8f8cSSatish Balay if (M != N || m != n){ /* N and n are not used after this */ 1654a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"For symmetric format, set M=N and m=n"); 1655a30f8f8cSSatish Balay } 1656a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1657a30f8f8cSSatish Balay 1658a30f8f8cSSatish Balay if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 1659a30f8f8cSSatish Balay if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -2: value %d",d_nz); 1660a30f8f8cSSatish Balay if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -2: value %d",o_nz); 1661a30f8f8cSSatish Balay if (d_nnz) { 1662a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 1663a30f8f8cSSatish Balay if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1664a30f8f8cSSatish Balay } 1665a30f8f8cSSatish Balay } 1666a30f8f8cSSatish Balay if (o_nnz) { 1667a30f8f8cSSatish Balay for (i=0; i<m/bs; i++) { 1668a30f8f8cSSatish Balay if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1669a30f8f8cSSatish Balay } 1670a30f8f8cSSatish Balay } 1671a30f8f8cSSatish Balay 1672a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1673a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpisbaij",&flag1);CHKERRQ(ierr); 1674a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 1675a30f8f8cSSatish Balay if (!flag1 && !flag2 && size == 1) { 1676a30f8f8cSSatish Balay if (M == PETSC_DECIDE) M = m; 1677a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(comm,bs,M,M,d_nz,d_nnz,A);CHKERRQ(ierr); 1678a30f8f8cSSatish Balay PetscFunctionReturn(0); 1679a30f8f8cSSatish Balay } 1680a30f8f8cSSatish Balay 1681a30f8f8cSSatish Balay *A = 0; 1682a30f8f8cSSatish Balay PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",comm,MatDestroy,MatView); 1683a30f8f8cSSatish Balay PLogObjectCreate(B); 1684a30f8f8cSSatish Balay B->data = (void*)(b = PetscNew(Mat_MPISBAIJ));CHKPTRQ(b); 1685a30f8f8cSSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPISBAIJ));CHKERRQ(ierr); 1686a30f8f8cSSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1687a30f8f8cSSatish Balay 1688a30f8f8cSSatish Balay B->ops->destroy = MatDestroy_MPISBAIJ; 1689a30f8f8cSSatish Balay B->ops->view = MatView_MPISBAIJ; 1690a30f8f8cSSatish Balay B->mapping = 0; 1691a30f8f8cSSatish Balay B->factor = 0; 1692a30f8f8cSSatish Balay B->assembled = PETSC_FALSE; 1693a30f8f8cSSatish Balay 1694a30f8f8cSSatish Balay B->insertmode = NOT_SET_VALUES; 1695a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 1696a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 1697a30f8f8cSSatish Balay 1698a30f8f8cSSatish Balay if (m == PETSC_DECIDE && (d_nnz || o_nnz)) { 1699a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1700a30f8f8cSSatish Balay } 1701a30f8f8cSSatish Balay if (M == PETSC_DECIDE && m == PETSC_DECIDE) { 1702a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 1703a30f8f8cSSatish Balay } 1704a30f8f8cSSatish Balay if (M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1705a30f8f8cSSatish Balay 1706a30f8f8cSSatish Balay if (M == PETSC_DECIDE) { 1707a30f8f8cSSatish Balay work[0] = m; mbs = m/bs; 1708a30f8f8cSSatish Balay ierr = MPI_Allreduce(work,sum,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 1709a30f8f8cSSatish Balay M = sum[0]; Mbs = M/bs; 1710a30f8f8cSSatish Balay } else { /* M is specified */ 1711a30f8f8cSSatish Balay Mbs = M/bs; 1712a30f8f8cSSatish Balay if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 1713a30f8f8cSSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 1714a30f8f8cSSatish Balay m = mbs*bs; 1715a30f8f8cSSatish Balay } 1716a30f8f8cSSatish Balay 1717a30f8f8cSSatish Balay if (mbs*bs != m) { 1718a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows/cols must be divisible by blocksize"); 1719a30f8f8cSSatish Balay } 1720a30f8f8cSSatish Balay 1721a30f8f8cSSatish Balay b->m = m; B->m = m; 1722a30f8f8cSSatish Balay b->n = m; B->n = m; 1723a30f8f8cSSatish Balay b->N = M; B->N = M; 1724a30f8f8cSSatish Balay b->M = M; 1725a30f8f8cSSatish Balay B->M = M; 1726a30f8f8cSSatish Balay b->bs = bs; 1727a30f8f8cSSatish Balay b->bs2 = bs*bs; 1728a30f8f8cSSatish Balay b->mbs = mbs; 1729a30f8f8cSSatish Balay b->nbs = mbs; 1730a30f8f8cSSatish Balay b->Mbs = Mbs; 1731a30f8f8cSSatish Balay b->Nbs = Mbs; 1732a30f8f8cSSatish Balay 1733a30f8f8cSSatish Balay /* the information in the maps duplicates the information computed below, eventually 1734a30f8f8cSSatish Balay we should remove the duplicate information that is not contained in the maps */ 1735a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->rmap);CHKERRQ(ierr); 1736a30f8f8cSSatish Balay ierr = MapCreateMPI(B->comm,m,M,&B->cmap);CHKERRQ(ierr); 1737a30f8f8cSSatish Balay 1738a30f8f8cSSatish Balay /* build local table of row and column ownerships */ 1739a30f8f8cSSatish Balay b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 1740a30f8f8cSSatish Balay PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1741a30f8f8cSSatish Balay b->cowners = b->rowners + b->size + 2; 1742a30f8f8cSSatish Balay b->rowners_bs = b->cowners + b->size + 2; 1743a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1744a30f8f8cSSatish Balay b->rowners[0] = 0; 1745a30f8f8cSSatish Balay for (i=2; i<=b->size; i++) { 1746a30f8f8cSSatish Balay b->rowners[i] += b->rowners[i-1]; 1747a30f8f8cSSatish Balay } 1748a30f8f8cSSatish Balay for (i=0; i<=b->size; i++) { 1749a30f8f8cSSatish Balay b->rowners_bs[i] = b->rowners[i]*bs; 1750a30f8f8cSSatish Balay } 1751a30f8f8cSSatish Balay b->rstart = b->rowners[b->rank]; 1752a30f8f8cSSatish Balay b->rend = b->rowners[b->rank+1]; 1753a30f8f8cSSatish Balay b->rstart_bs = b->rstart * bs; 1754a30f8f8cSSatish Balay b->rend_bs = b->rend * bs; 1755a30f8f8cSSatish Balay 1756a30f8f8cSSatish Balay b->cstart = b->rstart; 1757a30f8f8cSSatish Balay b->cend = b->rend; 1758a30f8f8cSSatish Balay b->cstart_bs = b->cstart * bs; 1759a30f8f8cSSatish Balay b->cend_bs = b->cend * bs; 1760a30f8f8cSSatish Balay 1761a30f8f8cSSatish Balay 1762a30f8f8cSSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 1763a30f8f8cSSatish Balay ierr = MatCreateSeqSBAIJ(PETSC_COMM_SELF,bs,m,m,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 1764a30f8f8cSSatish Balay PLogObjectParent(B,b->A); 1765a30f8f8cSSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 1766a30f8f8cSSatish Balay ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,M,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 1767a30f8f8cSSatish Balay PLogObjectParent(B,b->B); 1768a30f8f8cSSatish Balay 1769a30f8f8cSSatish Balay /* build cache for off array entries formed */ 1770a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1771a30f8f8cSSatish Balay ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 1772a30f8f8cSSatish Balay b->donotstash = PETSC_FALSE; 1773a30f8f8cSSatish Balay b->colmap = PETSC_NULL; 1774a30f8f8cSSatish Balay b->garray = PETSC_NULL; 1775a30f8f8cSSatish Balay b->roworiented = PETSC_TRUE; 1776a30f8f8cSSatish Balay 1777a30f8f8cSSatish Balay #if defined(PEYSC_USE_MAT_SINGLE) 1778a30f8f8cSSatish Balay /* stuff for MatSetValues_XXX in single precision */ 1779a30f8f8cSSatish Balay b->lensetvalues = 0; 1780a30f8f8cSSatish Balay b->setvaluescopy = PETSC_NULL; 1781a30f8f8cSSatish Balay #endif 1782a30f8f8cSSatish Balay 1783a30f8f8cSSatish Balay /* stuff used in block assembly */ 1784a30f8f8cSSatish Balay b->barray = 0; 1785a30f8f8cSSatish Balay 1786a30f8f8cSSatish Balay /* stuff used for matrix vector multiply */ 1787a30f8f8cSSatish Balay b->lvec = 0; 1788a30f8f8cSSatish Balay b->Mvctx = 0; 1789a30f8f8cSSatish Balay 1790a30f8f8cSSatish Balay /* stuff for MatGetRow() */ 1791a30f8f8cSSatish Balay b->rowindices = 0; 1792a30f8f8cSSatish Balay b->rowvalues = 0; 1793a30f8f8cSSatish Balay b->getrowactive = PETSC_FALSE; 1794a30f8f8cSSatish Balay 1795a30f8f8cSSatish Balay /* hash table stuff */ 1796a30f8f8cSSatish Balay b->ht = 0; 1797a30f8f8cSSatish Balay b->hd = 0; 1798a30f8f8cSSatish Balay b->ht_size = 0; 1799a30f8f8cSSatish Balay b->ht_flag = PETSC_FALSE; 1800a30f8f8cSSatish Balay b->ht_fact = 0; 1801a30f8f8cSSatish Balay b->ht_total_ct = 0; 1802a30f8f8cSSatish Balay b->ht_insert_ct = 0; 1803a30f8f8cSSatish Balay 1804a30f8f8cSSatish Balay *A = B; 1805a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 1806a30f8f8cSSatish Balay if (flg) { 1807a30f8f8cSSatish Balay double fact = 1.39; 1808a30f8f8cSSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 1809a30f8f8cSSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 1810a30f8f8cSSatish Balay if (fact <= 1.0) fact = 1.39; 1811a30f8f8cSSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 1812a30f8f8cSSatish Balay PLogInfo(0,"MatCreateMPISBAIJ:Hash table Factor used %5.2f\n",fact); 1813a30f8f8cSSatish Balay } 1814a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1815a30f8f8cSSatish Balay "MatStoreValues_MPISBAIJ", 1816a30f8f8cSSatish Balay MatStoreValues_MPISBAIJ);CHKERRQ(ierr); 1817a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1818a30f8f8cSSatish Balay "MatRetrieveValues_MPISBAIJ", 1819a30f8f8cSSatish Balay MatRetrieveValues_MPISBAIJ);CHKERRQ(ierr); 1820a30f8f8cSSatish Balay ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 1821a30f8f8cSSatish Balay "MatGetDiagonalBlock_MPISBAIJ", 1822a30f8f8cSSatish Balay MatGetDiagonalBlock_MPISBAIJ);CHKERRQ(ierr); 1823a30f8f8cSSatish Balay PetscFunctionReturn(0); 1824a30f8f8cSSatish Balay } 1825a30f8f8cSSatish Balay 1826a30f8f8cSSatish Balay 1827a30f8f8cSSatish Balay #undef __FUNC__ 1828a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatDuplicate_MPISBAIJ" 1829a30f8f8cSSatish Balay static int MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1830a30f8f8cSSatish Balay { 1831a30f8f8cSSatish Balay Mat mat; 1832a30f8f8cSSatish Balay Mat_MPISBAIJ *a,*oldmat = (Mat_MPISBAIJ*)matin->data; 1833a30f8f8cSSatish Balay int ierr,len=0; 1834a30f8f8cSSatish Balay PetscTruth flg; 1835a30f8f8cSSatish Balay 1836a30f8f8cSSatish Balay PetscFunctionBegin; 1837a30f8f8cSSatish Balay *newmat = 0; 1838a30f8f8cSSatish Balay PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPISBAIJ,"Mat",matin->comm,MatDestroy,MatView); 1839a30f8f8cSSatish Balay PLogObjectCreate(mat); 1840a30f8f8cSSatish Balay mat->data = (void*)(a = PetscNew(Mat_MPISBAIJ));CHKPTRQ(a); 1841a30f8f8cSSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1842a30f8f8cSSatish Balay mat->ops->destroy = MatDestroy_MPISBAIJ; 1843a30f8f8cSSatish Balay mat->ops->view = MatView_MPISBAIJ; 1844a30f8f8cSSatish Balay mat->factor = matin->factor; 1845a30f8f8cSSatish Balay mat->assembled = PETSC_TRUE; 1846a30f8f8cSSatish Balay mat->insertmode = NOT_SET_VALUES; 1847a30f8f8cSSatish Balay 1848a30f8f8cSSatish Balay a->m = mat->m = oldmat->m; 1849a30f8f8cSSatish Balay a->n = mat->n = oldmat->n; 1850a30f8f8cSSatish Balay a->M = mat->M = oldmat->M; 1851a30f8f8cSSatish Balay a->N = mat->N = oldmat->N; 1852a30f8f8cSSatish Balay 1853a30f8f8cSSatish Balay a->bs = oldmat->bs; 1854a30f8f8cSSatish Balay a->bs2 = oldmat->bs2; 1855a30f8f8cSSatish Balay a->mbs = oldmat->mbs; 1856a30f8f8cSSatish Balay a->nbs = oldmat->nbs; 1857a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs; 1858a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs; 1859a30f8f8cSSatish Balay 1860a30f8f8cSSatish Balay a->rstart = oldmat->rstart; 1861a30f8f8cSSatish Balay a->rend = oldmat->rend; 1862a30f8f8cSSatish Balay a->cstart = oldmat->cstart; 1863a30f8f8cSSatish Balay a->cend = oldmat->cend; 1864a30f8f8cSSatish Balay a->size = oldmat->size; 1865a30f8f8cSSatish Balay a->rank = oldmat->rank; 1866a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash; 1867a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented; 1868a30f8f8cSSatish Balay a->rowindices = 0; 1869a30f8f8cSSatish Balay a->rowvalues = 0; 1870a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE; 1871a30f8f8cSSatish Balay a->barray = 0; 1872a30f8f8cSSatish Balay a->rstart_bs = oldmat->rstart_bs; 1873a30f8f8cSSatish Balay a->rend_bs = oldmat->rend_bs; 1874a30f8f8cSSatish Balay a->cstart_bs = oldmat->cstart_bs; 1875a30f8f8cSSatish Balay a->cend_bs = oldmat->cend_bs; 1876a30f8f8cSSatish Balay 1877a30f8f8cSSatish Balay /* hash table stuff */ 1878a30f8f8cSSatish Balay a->ht = 0; 1879a30f8f8cSSatish Balay a->hd = 0; 1880a30f8f8cSSatish Balay a->ht_size = 0; 1881a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag; 1882a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact; 1883a30f8f8cSSatish Balay a->ht_total_ct = 0; 1884a30f8f8cSSatish Balay a->ht_insert_ct = 0; 1885a30f8f8cSSatish Balay 1886a30f8f8cSSatish Balay 1887a30f8f8cSSatish Balay a->rowners = (int*)PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 1888a30f8f8cSSatish Balay PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPISBAIJ)); 1889a30f8f8cSSatish Balay a->cowners = a->rowners + a->size + 2; 1890a30f8f8cSSatish Balay a->rowners_bs = a->cowners + a->size + 2; 1891a30f8f8cSSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 1892a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 1893a30f8f8cSSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 1894a30f8f8cSSatish Balay if (oldmat->colmap) { 1895a30f8f8cSSatish Balay #if defined (PETSC_USE_CTABLE) 1896a30f8f8cSSatish Balay ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1897a30f8f8cSSatish Balay #else 1898a30f8f8cSSatish Balay a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 1899a30f8f8cSSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 1900a30f8f8cSSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 1901a30f8f8cSSatish Balay #endif 1902a30f8f8cSSatish Balay } else a->colmap = 0; 1903a30f8f8cSSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 1904a30f8f8cSSatish Balay a->garray = (int*)PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 1905a30f8f8cSSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 1906a30f8f8cSSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 1907a30f8f8cSSatish Balay } else a->garray = 0; 1908a30f8f8cSSatish Balay 1909a30f8f8cSSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1910a30f8f8cSSatish Balay PLogObjectParent(mat,a->lvec); 1911a30f8f8cSSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1912a30f8f8cSSatish Balay 1913a30f8f8cSSatish Balay PLogObjectParent(mat,a->Mvctx); 1914a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1915a30f8f8cSSatish Balay PLogObjectParent(mat,a->A); 1916a30f8f8cSSatish Balay ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1917a30f8f8cSSatish Balay PLogObjectParent(mat,a->B); 1918a30f8f8cSSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 1919a30f8f8cSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 1920a30f8f8cSSatish Balay if (flg) { 1921a30f8f8cSSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 1922a30f8f8cSSatish Balay } 1923a30f8f8cSSatish Balay *newmat = mat; 1924a30f8f8cSSatish Balay PetscFunctionReturn(0); 1925a30f8f8cSSatish Balay } 1926a30f8f8cSSatish Balay 1927a30f8f8cSSatish Balay #include "petscsys.h" 1928a30f8f8cSSatish Balay 1929a30f8f8cSSatish Balay #undef __FUNC__ 1930a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatLoad_MPISBAIJ" 1931a30f8f8cSSatish Balay int MatLoad_MPISBAIJ(Viewer viewer,MatType type,Mat *newmat) 1932a30f8f8cSSatish Balay { 1933a30f8f8cSSatish Balay Mat A; 1934a30f8f8cSSatish Balay int i,nz,ierr,j,rstart,rend,fd; 1935a30f8f8cSSatish Balay Scalar *vals,*buf; 1936a30f8f8cSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 1937a30f8f8cSSatish Balay MPI_Status status; 1938a30f8f8cSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 1939a30f8f8cSSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 1940a30f8f8cSSatish Balay int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 1941a30f8f8cSSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 1942a30f8f8cSSatish Balay int dcount,kmax,k,nzcount,tmp; 1943a30f8f8cSSatish Balay 1944a30f8f8cSSatish Balay PetscFunctionBegin; 1945a30f8f8cSSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1946a30f8f8cSSatish Balay 1947a30f8f8cSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1948a30f8f8cSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1949a30f8f8cSSatish Balay if (!rank) { 1950a30f8f8cSSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1951a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1952a30f8f8cSSatish Balay if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 1953a30f8f8cSSatish Balay if (header[3] < 0) { 1954a30f8f8cSSatish Balay SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPISBAIJ"); 1955a30f8f8cSSatish Balay } 1956a30f8f8cSSatish Balay } 1957a30f8f8cSSatish Balay 1958a30f8f8cSSatish Balay ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1959a30f8f8cSSatish Balay M = header[1]; N = header[2]; 1960a30f8f8cSSatish Balay 1961a30f8f8cSSatish Balay if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 1962a30f8f8cSSatish Balay 1963a30f8f8cSSatish Balay /* 1964a30f8f8cSSatish Balay This code adds extra rows to make sure the number of rows is 1965a30f8f8cSSatish Balay divisible by the blocksize 1966a30f8f8cSSatish Balay */ 1967a30f8f8cSSatish Balay Mbs = M/bs; 1968a30f8f8cSSatish Balay extra_rows = bs - M + bs*(Mbs); 1969a30f8f8cSSatish Balay if (extra_rows == bs) extra_rows = 0; 1970a30f8f8cSSatish Balay else Mbs++; 1971a30f8f8cSSatish Balay if (extra_rows &&!rank) { 1972a30f8f8cSSatish Balay PLogInfo(0,"MatLoad_MPISBAIJ:Padding loaded matrix to match blocksize\n"); 1973a30f8f8cSSatish Balay } 1974a30f8f8cSSatish Balay 1975a30f8f8cSSatish Balay /* determine ownership of all rows */ 1976a30f8f8cSSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 1977a30f8f8cSSatish Balay m = mbs * bs; 1978a30f8f8cSSatish Balay rowners = (int*)PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 1979a30f8f8cSSatish Balay browners = rowners + size + 1; 1980a30f8f8cSSatish Balay ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1981a30f8f8cSSatish Balay rowners[0] = 0; 1982a30f8f8cSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 1983a30f8f8cSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 1984a30f8f8cSSatish Balay rstart = rowners[rank]; 1985a30f8f8cSSatish Balay rend = rowners[rank+1]; 1986a30f8f8cSSatish Balay 1987a30f8f8cSSatish Balay /* distribute row lengths to all processors */ 1988a30f8f8cSSatish Balay locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKPTRQ(locrowlens); 1989a30f8f8cSSatish Balay if (!rank) { 1990a30f8f8cSSatish Balay rowlengths = (int*)PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 1991a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1992a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 1993a30f8f8cSSatish Balay sndcounts = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(sndcounts); 1994a30f8f8cSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 1995a30f8f8cSSatish Balay ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 1996a30f8f8cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1997a30f8f8cSSatish Balay } else { 1998a30f8f8cSSatish Balay ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 1999a30f8f8cSSatish Balay } 2000a30f8f8cSSatish Balay 20010222edb1SHong Zhang if (!rank) { /* procs[0] */ 2002a30f8f8cSSatish Balay /* calculate the number of nonzeros on each processor */ 2003a30f8f8cSSatish Balay procsnz = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(procsnz); 2004a30f8f8cSSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 2005a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2006a30f8f8cSSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 2007a30f8f8cSSatish Balay procsnz[i] += rowlengths[j]; 2008a30f8f8cSSatish Balay } 2009a30f8f8cSSatish Balay } 2010a30f8f8cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2011a30f8f8cSSatish Balay 2012a30f8f8cSSatish Balay /* determine max buffer needed and allocate it */ 2013a30f8f8cSSatish Balay maxnz = 0; 2014a30f8f8cSSatish Balay for (i=0; i<size; i++) { 2015a30f8f8cSSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 2016a30f8f8cSSatish Balay } 2017a30f8f8cSSatish Balay cols = (int*)PetscMalloc(maxnz*sizeof(int));CHKPTRQ(cols); 2018a30f8f8cSSatish Balay 2019a30f8f8cSSatish Balay /* read in my part of the matrix column indices */ 2020a30f8f8cSSatish Balay nz = procsnz[0]; 2021a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2022a30f8f8cSSatish Balay mycols = ibuf; 2023a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2024a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2025a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2026a30f8f8cSSatish Balay 2027a30f8f8cSSatish Balay /* read in every ones (except the last) and ship off */ 2028a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2029a30f8f8cSSatish Balay nz = procsnz[i]; 2030a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2031a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 2032a30f8f8cSSatish Balay } 2033a30f8f8cSSatish Balay /* read in the stuff for the last proc */ 2034a30f8f8cSSatish Balay if (size != 1) { 2035a30f8f8cSSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2036a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2037a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2038a30f8f8cSSatish Balay ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 2039a30f8f8cSSatish Balay } 2040a30f8f8cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 20410222edb1SHong Zhang } else { /* procs[i], i>0 */ 2042a30f8f8cSSatish Balay /* determine buffer space needed for message */ 2043a30f8f8cSSatish Balay nz = 0; 2044a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2045a30f8f8cSSatish Balay nz += locrowlens[i]; 2046a30f8f8cSSatish Balay } 2047a30f8f8cSSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 2048a30f8f8cSSatish Balay mycols = ibuf; 2049a30f8f8cSSatish Balay /* receive message of column indices*/ 2050a30f8f8cSSatish Balay ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2051a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2052a30f8f8cSSatish Balay if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 2053a30f8f8cSSatish Balay } 2054a30f8f8cSSatish Balay 2055a30f8f8cSSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2056a30f8f8cSSatish Balay dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKPTRQ(dlens); 2057a30f8f8cSSatish Balay odlens = dlens + (rend-rstart); 2058a30f8f8cSSatish Balay mask = (int*)PetscMalloc(3*Mbs*sizeof(int));CHKPTRQ(mask); 2059a30f8f8cSSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 2060a30f8f8cSSatish Balay masked1 = mask + Mbs; 2061a30f8f8cSSatish Balay masked2 = masked1 + Mbs; 2062a30f8f8cSSatish Balay rowcount = 0; nzcount = 0; 2063a30f8f8cSSatish Balay for (i=0; i<mbs; i++) { 2064a30f8f8cSSatish Balay dcount = 0; 2065a30f8f8cSSatish Balay odcount = 0; 2066a30f8f8cSSatish Balay for (j=0; j<bs; j++) { 2067a30f8f8cSSatish Balay kmax = locrowlens[rowcount]; 2068a30f8f8cSSatish Balay for (k=0; k<kmax; k++) { 20690222edb1SHong Zhang tmp = mycols[nzcount++]/bs; /* block col. index */ 2070a30f8f8cSSatish Balay if (!mask[tmp]) { 2071a30f8f8cSSatish Balay mask[tmp] = 1; 20720222edb1SHong Zhang if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; /* entry in off-diag portion */ 20730222edb1SHong Zhang else masked1[dcount++] = tmp; /* entry in diag portion */ 2074a30f8f8cSSatish Balay } 2075a30f8f8cSSatish Balay } 2076a30f8f8cSSatish Balay rowcount++; 2077a30f8f8cSSatish Balay } 2078a30f8f8cSSatish Balay 20790222edb1SHong Zhang dlens[i] = dcount; /* d_nzz[i] */ 20800222edb1SHong Zhang odlens[i] = odcount; /* o_nzz[i] */ 2081a30f8f8cSSatish Balay 2082a30f8f8cSSatish Balay /* zero out the mask elements we set */ 2083a30f8f8cSSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 2084a30f8f8cSSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 2085a30f8f8cSSatish Balay } 2086a30f8f8cSSatish Balay 2087a30f8f8cSSatish Balay /* create our matrix */ 20887e06b45fSHong Zhang ierr = MatCreateMPISBAIJ(comm,bs,m,m,PETSC_DETERMINE,PETSC_DETERMINE,0,dlens,0,odlens,newmat); 2089bfe19f1aSHong Zhang CHKERRQ(ierr); 2090a30f8f8cSSatish Balay A = *newmat; 2091a30f8f8cSSatish Balay MatSetOption(A,MAT_COLUMNS_SORTED); 2092a30f8f8cSSatish Balay 2093a30f8f8cSSatish Balay if (!rank) { 2094a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(maxnz*sizeof(Scalar));CHKPTRQ(buf); 2095a30f8f8cSSatish Balay /* read in my part of the matrix numerical values */ 2096a30f8f8cSSatish Balay nz = procsnz[0]; 2097a30f8f8cSSatish Balay vals = buf; 2098a30f8f8cSSatish Balay mycols = ibuf; 2099a30f8f8cSSatish Balay if (size == 1) nz -= extra_rows; 2100a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2101a30f8f8cSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2102a30f8f8cSSatish Balay 2103a30f8f8cSSatish Balay /* insert into matrix */ 2104a30f8f8cSSatish Balay jj = rstart*bs; 2105a30f8f8cSSatish Balay for (i=0; i<m; i++) { 21067e06b45fSHong Zhang ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2107a30f8f8cSSatish Balay mycols += locrowlens[i]; 2108a30f8f8cSSatish Balay vals += locrowlens[i]; 2109a30f8f8cSSatish Balay jj++; 2110a30f8f8cSSatish Balay } 21117e06b45fSHong Zhang 2112a30f8f8cSSatish Balay /* read in other processors (except the last one) and ship out */ 2113a30f8f8cSSatish Balay for (i=1; i<size-1; i++) { 2114a30f8f8cSSatish Balay nz = procsnz[i]; 2115a30f8f8cSSatish Balay vals = buf; 2116a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2117a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 2118a30f8f8cSSatish Balay } 2119a30f8f8cSSatish Balay /* the last proc */ 2120a30f8f8cSSatish Balay if (size != 1){ 2121a30f8f8cSSatish Balay nz = procsnz[i] - extra_rows; 2122a30f8f8cSSatish Balay vals = buf; 2123a30f8f8cSSatish Balay ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2124a30f8f8cSSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2125a30f8f8cSSatish Balay ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 2126a30f8f8cSSatish Balay } 2127a30f8f8cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 21287e06b45fSHong Zhang 2129a30f8f8cSSatish Balay } else { 2130a30f8f8cSSatish Balay /* receive numeric values */ 2131a30f8f8cSSatish Balay buf = (Scalar*)PetscMalloc(nz*sizeof(Scalar));CHKPTRQ(buf); 2132a30f8f8cSSatish Balay 2133a30f8f8cSSatish Balay /* receive message of values*/ 2134a30f8f8cSSatish Balay vals = buf; 2135a30f8f8cSSatish Balay mycols = ibuf; 2136a30f8f8cSSatish Balay ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2137a30f8f8cSSatish Balay ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2138a30f8f8cSSatish Balay if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 2139a30f8f8cSSatish Balay 2140a30f8f8cSSatish Balay /* insert into matrix */ 2141a30f8f8cSSatish Balay jj = rstart*bs; 2142a30f8f8cSSatish Balay for (i=0; i<m; i++) { 2143a30f8f8cSSatish Balay ierr = MatSetValues_MPISBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 2144a30f8f8cSSatish Balay mycols += locrowlens[i]; 2145a30f8f8cSSatish Balay vals += locrowlens[i]; 2146a30f8f8cSSatish Balay jj++; 2147a30f8f8cSSatish Balay } 2148a30f8f8cSSatish Balay } 21497e06b45fSHong Zhang 2150a30f8f8cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2151a30f8f8cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2152a30f8f8cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2153a30f8f8cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2154a30f8f8cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2155a30f8f8cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 2156a30f8f8cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2157a30f8f8cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2158a30f8f8cSSatish Balay PetscFunctionReturn(0); 2159a30f8f8cSSatish Balay } 2160a30f8f8cSSatish Balay 2161a30f8f8cSSatish Balay #undef __FUNC__ 2162a30f8f8cSSatish Balay #define __FUNC__ /*<a name=""></a>*/"MatMPISBAIJSetHashTableFactor" 2163a30f8f8cSSatish Balay /*@ 2164a30f8f8cSSatish Balay MatMPISBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2165a30f8f8cSSatish Balay 2166a30f8f8cSSatish Balay Input Parameters: 2167a30f8f8cSSatish Balay . mat - the matrix 2168a30f8f8cSSatish Balay . fact - factor 2169a30f8f8cSSatish Balay 2170a30f8f8cSSatish Balay Collective on Mat 2171a30f8f8cSSatish Balay 2172a30f8f8cSSatish Balay Level: advanced 2173a30f8f8cSSatish Balay 2174a30f8f8cSSatish Balay Notes: 2175a30f8f8cSSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2176a30f8f8cSSatish Balay 2177a30f8f8cSSatish Balay .keywords: matrix, hashtable, factor, HT 2178a30f8f8cSSatish Balay 2179a30f8f8cSSatish Balay .seealso: MatSetOption() 2180a30f8f8cSSatish Balay @*/ 2181a30f8f8cSSatish Balay int MatMPISBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2182a30f8f8cSSatish Balay { 2183a30f8f8cSSatish Balay PetscFunctionBegin; 2184f3566a2aSHong Zhang SETERRQ(1,1,"Function not yet written for SBAIJ format"); 218596e2eec7SHong Zhang /* PetscFunctionReturn(0); */ 2186a30f8f8cSSatish Balay } 2187