xref: /petsc/src/mat/impls/sbaij/seq/sbaij.c (revision 00c67f3b09c0bcda06af5ed306d845d9138e5003)
149b5e25fSSatish Balay 
249b5e25fSSatish Balay /*
3a1373b80SHong Zhang     Defines the basic matrix operations for the SBAIJ (compressed row)
449b5e25fSSatish Balay   matrix storage format.
549b5e25fSSatish Balay */
6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h>         /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
8c6db04a5SJed Brown #include <petscblaslapack.h>
949b5e25fSSatish Balay 
10c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h>
1170dcbbb9SBarry Smith #define USESHORT
12c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h>
1370dcbbb9SBarry Smith 
14ace3abfcSBarry Smith extern PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat,PetscBool);
156214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
16cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat,MatType,MatReuse,Mat*);
176214f412SHong Zhang #endif
18b5b17502SBarry Smith 
1949b5e25fSSatish Balay /*
2049b5e25fSSatish Balay      Checks for missing diagonals
2149b5e25fSSatish Balay */
224a2ae208SSatish Balay #undef __FUNCT__
234a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ"
24ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool  *missing,PetscInt *dd)
2549b5e25fSSatish Balay {
26045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
276849ba73SBarry Smith   PetscErrorCode ierr;
287734d3b5SMatthew G. Knepley   PetscInt       *diag,*ii = a->i,i;
2949b5e25fSSatish Balay 
3049b5e25fSSatish Balay   PetscFunctionBegin;
31045c9aa0SHong Zhang   ierr     = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr);
322af78befSBarry Smith   *missing = PETSC_FALSE;
337734d3b5SMatthew G. Knepley   if (A->rmap->n > 0 && !ii) {
34358d2f5dSShri Abhyankar     *missing = PETSC_TRUE;
35358d2f5dSShri Abhyankar     if (dd) *dd = 0;
36955c1f14SBarry Smith     ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr);
37358d2f5dSShri Abhyankar   } else {
38358d2f5dSShri Abhyankar     diag = a->diag;
3949b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
407734d3b5SMatthew G. Knepley       if (diag[i] >= ii[i+1]) {
412af78befSBarry Smith         *missing = PETSC_TRUE;
422af78befSBarry Smith         if (dd) *dd = i;
432af78befSBarry Smith         break;
442af78befSBarry Smith       }
4549b5e25fSSatish Balay     }
46358d2f5dSShri Abhyankar   }
4749b5e25fSSatish Balay   PetscFunctionReturn(0);
4849b5e25fSSatish Balay }
4949b5e25fSSatish Balay 
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ"
52dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A)
5349b5e25fSSatish Balay {
54045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
556849ba73SBarry Smith   PetscErrorCode ierr;
5648dd3d27SHong Zhang   PetscInt       i,j;
5749b5e25fSSatish Balay 
5849b5e25fSSatish Balay   PetscFunctionBegin;
5909f38230SBarry Smith   if (!a->diag) {
60785e854fSJed Brown     ierr         = PetscMalloc1(a->mbs,&a->diag);CHKERRQ(ierr);
613bb1ff40SBarry Smith     ierr         = PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt));CHKERRQ(ierr);
62c760cd28SBarry Smith     a->free_diag = PETSC_TRUE;
6309f38230SBarry Smith   }
6448dd3d27SHong Zhang   for (i=0; i<a->mbs; i++) {
6548dd3d27SHong Zhang     a->diag[i] = a->i[i+1];
6648dd3d27SHong Zhang     for (j=a->i[i]; j<a->i[i+1]; j++) {
6748dd3d27SHong Zhang       if (a->j[j] == i) {
6848dd3d27SHong Zhang         a->diag[i] = j;
6948dd3d27SHong Zhang         break;
7048dd3d27SHong Zhang       }
7148dd3d27SHong Zhang     }
7248dd3d27SHong Zhang   }
7349b5e25fSSatish Balay   PetscFunctionReturn(0);
7449b5e25fSSatish Balay }
7549b5e25fSSatish Balay 
764a2ae208SSatish Balay #undef __FUNCT__
774a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ"
781a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool  *done)
7949b5e25fSSatish Balay {
80a6ece127SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
81d0f46423SBarry Smith   PetscInt       i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs;
821a83f524SJed Brown   PetscInt       **ia = (PetscInt**)inia,**ja = (PetscInt**)inja;
838f7157efSSatish Balay   PetscErrorCode ierr;
8449b5e25fSSatish Balay 
8549b5e25fSSatish Balay   PetscFunctionBegin;
86d3e5a4abSHong Zhang   *nn = n;
87a1373b80SHong Zhang   if (!ia) PetscFunctionReturn(0);
888f7157efSSatish Balay   if (!blockcompressed) {
898f7157efSSatish Balay     /* malloc & create the natural set of indices */
90dcca6d9dSJed Brown     ierr = PetscMalloc2((n+1)*bs,ia,nz*bs,ja);CHKERRQ(ierr);
918f7157efSSatish Balay     for (i=0; i<n+1; i++) {
928f7157efSSatish Balay       for (j=0; j<bs; j++) {
93c6eed6cfSHong Zhang         (*ia)[i*bs+j] = a->i[i]*bs+j+oshift;
948f7157efSSatish Balay       }
958f7157efSSatish Balay     }
968f7157efSSatish Balay     for (i=0; i<nz; i++) {
978f7157efSSatish Balay       for (j=0; j<bs; j++) {
98c6eed6cfSHong Zhang         (*ja)[i*bs+j] = a->j[i]*bs+j+oshift;
998f7157efSSatish Balay       }
1008f7157efSSatish Balay     }
1018f7157efSSatish Balay   } else { /* blockcompressed */
102a6ece127SHong Zhang     if (oshift == 1) {
103a6ece127SHong Zhang       /* temporarily add 1 to i and j indices */
1046c6c5352SBarry Smith       for (i=0; i<nz; i++) a->j[i]++;
105a1373b80SHong Zhang       for (i=0; i<n+1; i++) a->i[i]++;
1068f7157efSSatish Balay     }
107a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
108a6ece127SHong Zhang   }
10949b5e25fSSatish Balay   PetscFunctionReturn(0);
11049b5e25fSSatish Balay }
11149b5e25fSSatish Balay 
1124a2ae208SSatish Balay #undef __FUNCT__
1134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ"
1141a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
11549b5e25fSSatish Balay {
116b7aaefc3SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
1178f7157efSSatish Balay   PetscInt       i,n = a->mbs,nz = a->i[n];
1188f7157efSSatish Balay   PetscErrorCode ierr;
119a6ece127SHong Zhang 
12049b5e25fSSatish Balay   PetscFunctionBegin;
12149b5e25fSSatish Balay   if (!ia) PetscFunctionReturn(0);
122a6ece127SHong Zhang 
1238f7157efSSatish Balay   if (!blockcompressed) {
1248f7157efSSatish Balay     ierr = PetscFree2(*ia,*ja);CHKERRQ(ierr);
1258f7157efSSatish Balay   } else if (oshift == 1) { /* blockcompressed */
1266c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]--;
127a6ece127SHong Zhang     for (i=0; i<n+1; i++) a->i[i]--;
128a6ece127SHong Zhang   }
129a6ece127SHong Zhang   PetscFunctionReturn(0);
13049b5e25fSSatish Balay }
13149b5e25fSSatish Balay 
1324a2ae208SSatish Balay #undef __FUNCT__
1334a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ"
134dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
13549b5e25fSSatish Balay {
13649b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
137dfbe8321SBarry Smith   PetscErrorCode ierr;
13849b5e25fSSatish Balay 
13949b5e25fSSatish Balay   PetscFunctionBegin;
140a9f03627SSatish Balay #if defined(PETSC_USE_LOG)
141d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap->N,a->nz);
142a9f03627SSatish Balay #endif
143e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
1447f53bb6cSHong Zhang   if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
1456bf464f9SBarry Smith   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
1466bf464f9SBarry Smith   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
1476bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
148c31cb41cSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
149c31cb41cSBarry Smith   ierr = PetscFree(a->inode.size);CHKERRQ(ierr);
150c760cd28SBarry Smith   if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);}
15105b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
15241f059aeSBarry Smith   ierr = PetscFree(a->sor_work);CHKERRQ(ierr);
15305b42c5fSBarry Smith   ierr = PetscFree(a->solves_work);CHKERRQ(ierr);
15405b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
15505b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
1564da8f245SBarry Smith   if (a->free_jshort) {ierr = PetscFree(a->jshort);CHKERRQ(ierr);}
1571a3463dfSHong Zhang   ierr = PetscFree(a->inew);CHKERRQ(ierr);
1586bf464f9SBarry Smith   ierr = MatDestroy(&a->parent);CHKERRQ(ierr);
159bf0cc555SLisandro Dalcin   ierr = PetscFree(A->data);CHKERRQ(ierr);
160901853e0SKris Buschelman 
161dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
162bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
163bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
164bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr);
165bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL);CHKERRQ(ierr);
166bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL);CHKERRQ(ierr);
167bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
16838f409ebSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
169bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqsbstrm_C",NULL);CHKERRQ(ierr);
1706214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1716214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_elemental_C",NULL);CHKERRQ(ierr);
1726214f412SHong Zhang #endif
17349b5e25fSSatish Balay   PetscFunctionReturn(0);
17449b5e25fSSatish Balay }
17549b5e25fSSatish Balay 
1764a2ae208SSatish Balay #undef __FUNCT__
1774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ"
178ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg)
17949b5e25fSSatish Balay {
180045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
18163ba0a88SBarry Smith   PetscErrorCode ierr;
18249b5e25fSSatish Balay 
18349b5e25fSSatish Balay   PetscFunctionBegin;
1844d9d31abSKris Buschelman   switch (op) {
1854d9d31abSKris Buschelman   case MAT_ROW_ORIENTED:
1864e0d8c25SBarry Smith     a->roworiented = flg;
1874d9d31abSKris Buschelman     break;
188a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
189a9817697SBarry Smith     a->keepnonzeropattern = flg;
1904d9d31abSKris Buschelman     break;
191512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
192512a5fc5SBarry Smith     a->nonew = (flg ? 0 : 1);
1934d9d31abSKris Buschelman     break;
1944d9d31abSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1954e0d8c25SBarry Smith     a->nonew = (flg ? -1 : 0);
1964d9d31abSKris Buschelman     break;
1974d9d31abSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1984e0d8c25SBarry Smith     a->nonew = (flg ? -2 : 0);
1994d9d31abSKris Buschelman     break;
20028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
20128b2fa4aSMatthew Knepley     a->nounused = (flg ? -1 : 0);
20228b2fa4aSMatthew Knepley     break;
2034e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
2044d9d31abSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
2054d9d31abSKris Buschelman   case MAT_USE_HASH_TABLE:
206290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
2074d9d31abSKris Buschelman     break;
2089a4540c5SBarry Smith   case MAT_HERMITIAN:
209e32f2f54SBarry Smith     if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first");
2100bc54ff2SBarry Smith     if (A->cmap->n < 65536 && A->cmap->bs == 1) {
211eeffb40dSHong Zhang       A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian_ushort;
2120bc54ff2SBarry Smith     } else if (A->cmap->bs == 1) {
213eeffb40dSHong Zhang       A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian;
214e32f2f54SBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1");
215eeffb40dSHong Zhang     break;
2163d472b54SHong Zhang   case MAT_SPD:
2175021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
2183d472b54SHong Zhang     break;
21977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
22077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
2219a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
2224dcd73b1SHong Zhang     /* These options are handled directly by MatSetOption() */
223290bbb0aSBarry Smith     break;
224941593c8SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
2254e0d8c25SBarry Smith     a->ignore_ltriangular = flg;
226941593c8SHong Zhang     break;
227941593c8SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
2284e0d8c25SBarry Smith     a->ignore_ltriangular = flg;
22977e54ba9SKris Buschelman     break;
230f5edf698SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
2314e0d8c25SBarry Smith     a->getrow_utriangular = flg;
232f5edf698SHong Zhang     break;
2334d9d31abSKris Buschelman   default:
234e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
23549b5e25fSSatish Balay   }
23649b5e25fSSatish Balay   PetscFunctionReturn(0);
23749b5e25fSSatish Balay }
23849b5e25fSSatish Balay 
2394a2ae208SSatish Balay #undef __FUNCT__
2404a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ"
24152768537SHong Zhang PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
24249b5e25fSSatish Balay {
24349b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
2446849ba73SBarry Smith   PetscErrorCode ierr;
24549b5e25fSSatish Balay 
24649b5e25fSSatish Balay   PetscFunctionBegin;
247e32f2f54SBarry Smith   if (A && !a->getrow_utriangular) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()");
24852768537SHong Zhang 
249f5edf698SHong Zhang   /* Get the upper triangular part of the row */
25052768537SHong Zhang   ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr);
25149b5e25fSSatish Balay   PetscFunctionReturn(0);
25249b5e25fSSatish Balay }
25349b5e25fSSatish Balay 
2544a2ae208SSatish Balay #undef __FUNCT__
2554a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ"
25613f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
25749b5e25fSSatish Balay {
258dfbe8321SBarry Smith   PetscErrorCode ierr;
25949b5e25fSSatish Balay 
26049b5e25fSSatish Balay   PetscFunctionBegin;
26105b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
26205b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
26349b5e25fSSatish Balay   PetscFunctionReturn(0);
26449b5e25fSSatish Balay }
26549b5e25fSSatish Balay 
2664a2ae208SSatish Balay #undef __FUNCT__
267f5edf698SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_SeqSBAIJ"
268f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A)
269f5edf698SHong Zhang {
270f5edf698SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
271f5edf698SHong Zhang 
272f5edf698SHong Zhang   PetscFunctionBegin;
273f5edf698SHong Zhang   a->getrow_utriangular = PETSC_TRUE;
274f5edf698SHong Zhang   PetscFunctionReturn(0);
275f5edf698SHong Zhang }
276f5edf698SHong Zhang #undef __FUNCT__
277f5edf698SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_SeqSBAIJ"
278f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A)
279f5edf698SHong Zhang {
280f5edf698SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
281f5edf698SHong Zhang 
282f5edf698SHong Zhang   PetscFunctionBegin;
283f5edf698SHong Zhang   a->getrow_utriangular = PETSC_FALSE;
284f5edf698SHong Zhang   PetscFunctionReturn(0);
285f5edf698SHong Zhang }
286f5edf698SHong Zhang 
287f5edf698SHong Zhang #undef __FUNCT__
2884a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ"
289fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B)
29049b5e25fSSatish Balay {
291dfbe8321SBarry Smith   PetscErrorCode ierr;
2925fd66863SKarl Rupp 
29349b5e25fSSatish Balay   PetscFunctionBegin;
294815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
295999d9058SBarry Smith     ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
296fc4dec0aSBarry Smith   }
2978115998fSBarry Smith   PetscFunctionReturn(0);
29849b5e25fSSatish Balay }
29949b5e25fSSatish Balay 
3004a2ae208SSatish Balay #undef __FUNCT__
3014a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII"
3027da1fb6eSBarry Smith PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer)
30349b5e25fSSatish Balay {
30449b5e25fSSatish Balay   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
305dfbe8321SBarry Smith   PetscErrorCode    ierr;
306d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
307f3ef73ceSBarry Smith   PetscViewerFormat format;
308121deb67SSatish Balay   PetscInt          *diag;
30949b5e25fSSatish Balay 
31049b5e25fSSatish Balay   PetscFunctionBegin;
311b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
312456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
31377431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
314fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
315d2507d54SMatthew Knepley     Mat        aij;
316ade3a672SBarry Smith     const char *matname;
317ade3a672SBarry Smith 
318d5f3da31SBarry Smith     if (A->factortype && bs>1) {
31970d5e725SHong Zhang       ierr = PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n");CHKERRQ(ierr);
32070d5e725SHong Zhang       PetscFunctionReturn(0);
32170d5e725SHong Zhang     }
322c9f458caSMatthew Knepley     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
323ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr);
324ade3a672SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij,matname);CHKERRQ(ierr);
325c9f458caSMatthew Knepley     ierr = MatView(aij,viewer);CHKERRQ(ierr);
3266bf464f9SBarry Smith     ierr = MatDestroy(&aij);CHKERRQ(ierr);
327fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
328d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
32949b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
33049b5e25fSSatish Balay       for (j=0; j<bs; j++) {
33177431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
33249b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
33349b5e25fSSatish Balay           for (l=0; l<bs; l++) {
33449b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
33549b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
33657622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
33757622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
33849b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
33957622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
34057622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
34149b5e25fSSatish Balay             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
34257622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
34349b5e25fSSatish Balay             }
34449b5e25fSSatish Balay #else
34549b5e25fSSatish Balay             if (a->a[bs2*k + l*bs + j] != 0.0) {
34657622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
34749b5e25fSSatish Balay             }
34849b5e25fSSatish Balay #endif
34949b5e25fSSatish Balay           }
35049b5e25fSSatish Balay         }
351b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
35249b5e25fSSatish Balay       }
35349b5e25fSSatish Balay     }
354d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
355c1490034SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
356c1490034SHong Zhang     PetscFunctionReturn(0);
35749b5e25fSSatish Balay   } else {
358d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
3592c990fa1SHong Zhang     if (A->factortype) { /* for factored matrix */
3602c990fa1SHong Zhang       if (bs>1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet");
3612c990fa1SHong Zhang 
362121deb67SSatish Balay       diag=a->diag;
363121deb67SSatish Balay       for (i=0; i<a->mbs; i++) { /* for row block i */
3642c990fa1SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
3652c990fa1SHong Zhang         /* diagonal entry */
3662c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX)
3672c990fa1SHong Zhang         if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) {
36857622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr);
3692c990fa1SHong Zhang         } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) {
37057622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr);
3712c990fa1SHong Zhang         } else {
37257622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]));CHKERRQ(ierr);
3732c990fa1SHong Zhang         }
3742c990fa1SHong Zhang #else
3756712e2f1SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]));CHKERRQ(ierr);
3762c990fa1SHong Zhang #endif
3772c990fa1SHong Zhang         /* off-diagonal entries */
3782c990fa1SHong Zhang         for (k=a->i[i]; k<a->i[i+1]-1; k++) {
3792c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX)
380ca0704adSBarry Smith           if (PetscImaginaryPart(a->a[k]) > 0.0) {
38157622a8eSBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr);
382ca0704adSBarry Smith           } else if (PetscImaginaryPart(a->a[k]) < 0.0) {
38357622a8eSBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr);
3842c990fa1SHong Zhang           } else {
38557622a8eSBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]));CHKERRQ(ierr);
3862c990fa1SHong Zhang           }
3872c990fa1SHong Zhang #else
38857622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[k],(double)a->a[k]);CHKERRQ(ierr);
3892c990fa1SHong Zhang #endif
3902c990fa1SHong Zhang         }
3912c990fa1SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
3922c990fa1SHong Zhang       }
3932c990fa1SHong Zhang 
3942c990fa1SHong Zhang     } else { /* for non-factored matrix */
3950c74a584SJed Brown       for (i=0; i<a->mbs; i++) { /* for row block i */
3960c74a584SJed Brown         for (j=0; j<bs; j++) {   /* for row bs*i + j */
39777431f27SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
3980c74a584SJed Brown           for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */
3990c74a584SJed Brown             for (l=0; l<bs; l++) {            /* for column */
40049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
40149b5e25fSSatish Balay               if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
40257622a8eSBarry Smith                 ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
40357622a8eSBarry Smith                                               (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
40449b5e25fSSatish Balay               } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
40557622a8eSBarry Smith                 ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
40657622a8eSBarry Smith                                               (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
40749b5e25fSSatish Balay               } else {
40857622a8eSBarry Smith                 ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
40949b5e25fSSatish Balay               }
41049b5e25fSSatish Balay #else
41157622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
41249b5e25fSSatish Balay #endif
41349b5e25fSSatish Balay             }
41449b5e25fSSatish Balay           }
415b0a32e0cSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
41649b5e25fSSatish Balay         }
41749b5e25fSSatish Balay       }
4182c990fa1SHong Zhang     }
419d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
42049b5e25fSSatish Balay   }
421b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
42249b5e25fSSatish Balay   PetscFunctionReturn(0);
42349b5e25fSSatish Balay }
42449b5e25fSSatish Balay 
4259804daf3SBarry Smith #include <petscdraw.h>
4264a2ae208SSatish Balay #undef __FUNCT__
4274a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom"
4286849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
42949b5e25fSSatish Balay {
43049b5e25fSSatish Balay   Mat            A = (Mat) Aa;
43149b5e25fSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)A->data;
4326849ba73SBarry Smith   PetscErrorCode ierr;
433d0f46423SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
43449b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
43549b5e25fSSatish Balay   MatScalar      *aa;
436b0a32e0cSBarry Smith   PetscViewer    viewer;
43749b5e25fSSatish Balay 
43849b5e25fSSatish Balay   PetscFunctionBegin;
43949b5e25fSSatish Balay   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
440b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
44149b5e25fSSatish Balay 
44249b5e25fSSatish Balay   /* loop over matrix elements drawing boxes */
443383922c3SLisandro Dalcin 
444383922c3SLisandro Dalcin   ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
445383922c3SLisandro Dalcin   ierr = PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");CHKERRQ(ierr);
446383922c3SLisandro Dalcin   /* Blue for negative, Cyan for zero and  Red for positive */
447b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
44849b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
44949b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
450d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
45149b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
45249b5e25fSSatish Balay       aa  = a->a + j*bs2;
45349b5e25fSSatish Balay       for (k=0; k<bs; k++) {
45449b5e25fSSatish Balay         for (l=0; l<bs; l++) {
45549b5e25fSSatish Balay           if (PetscRealPart(*aa++) >=  0.) continue;
456b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
45749b5e25fSSatish Balay         }
45849b5e25fSSatish Balay       }
45949b5e25fSSatish Balay     }
46049b5e25fSSatish Balay   }
461b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
46249b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
46349b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
464d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
46549b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
46649b5e25fSSatish Balay       aa = a->a + j*bs2;
46749b5e25fSSatish Balay       for (k=0; k<bs; k++) {
46849b5e25fSSatish Balay         for (l=0; l<bs; l++) {
46949b5e25fSSatish Balay           if (PetscRealPart(*aa++) != 0.) continue;
470b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
47149b5e25fSSatish Balay         }
47249b5e25fSSatish Balay       }
47349b5e25fSSatish Balay     }
47449b5e25fSSatish Balay   }
475b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
47649b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
47749b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
478d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
47949b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
48049b5e25fSSatish Balay       aa = a->a + j*bs2;
48149b5e25fSSatish Balay       for (k=0; k<bs; k++) {
48249b5e25fSSatish Balay         for (l=0; l<bs; l++) {
48349b5e25fSSatish Balay           if (PetscRealPart(*aa++) <= 0.) continue;
484b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
48549b5e25fSSatish Balay         }
48649b5e25fSSatish Balay       }
48749b5e25fSSatish Balay     }
48849b5e25fSSatish Balay   }
489383922c3SLisandro Dalcin   ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
49049b5e25fSSatish Balay   PetscFunctionReturn(0);
49149b5e25fSSatish Balay }
49249b5e25fSSatish Balay 
4934a2ae208SSatish Balay #undef __FUNCT__
4944a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw"
4956849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer)
49649b5e25fSSatish Balay {
497dfbe8321SBarry Smith   PetscErrorCode ierr;
49849b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,w,h;
499b0a32e0cSBarry Smith   PetscDraw      draw;
500ace3abfcSBarry Smith   PetscBool      isnull;
50149b5e25fSSatish Balay 
50249b5e25fSSatish Balay   PetscFunctionBegin;
503b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
504383922c3SLisandro Dalcin   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
505383922c3SLisandro Dalcin   if (isnull) PetscFunctionReturn(0);
50649b5e25fSSatish Balay 
507d0f46423SBarry Smith   xr   = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
50849b5e25fSSatish Balay   xr  += w;          yr += h;        xl = -w;     yl = -h;
509b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
510832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
511b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
5120298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
513832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
51449b5e25fSSatish Balay   PetscFunctionReturn(0);
51549b5e25fSSatish Balay }
51649b5e25fSSatish Balay 
5174a2ae208SSatish Balay #undef __FUNCT__
5184a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ"
519dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer)
52049b5e25fSSatish Balay {
521dfbe8321SBarry Smith   PetscErrorCode ierr;
522ace3abfcSBarry Smith   PetscBool      iascii,isdraw;
52308917f38SBarry Smith   FILE           *file = 0;
52449b5e25fSSatish Balay 
52549b5e25fSSatish Balay   PetscFunctionBegin;
526251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
527251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
52832077d6dSBarry Smith   if (iascii) {
52949b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
53049b5e25fSSatish Balay   } else if (isdraw) {
53149b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr);
53249b5e25fSSatish Balay   } else {
533a5e6ed63SBarry Smith     Mat        B;
534ade3a672SBarry Smith     const char *matname;
535ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
536ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr);
537ade3a672SBarry Smith     ierr = PetscObjectSetName((PetscObject)B,matname);CHKERRQ(ierr);
538a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
5396bf464f9SBarry Smith     ierr = MatDestroy(&B);CHKERRQ(ierr);
54008917f38SBarry Smith     ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
54108917f38SBarry Smith     if (file) {
54208917f38SBarry Smith       fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
54308917f38SBarry Smith     }
54449b5e25fSSatish Balay   }
54549b5e25fSSatish Balay   PetscFunctionReturn(0);
54649b5e25fSSatish Balay }
54749b5e25fSSatish Balay 
54849b5e25fSSatish Balay 
5494a2ae208SSatish Balay #undef __FUNCT__
5504a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ"
55113f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
55249b5e25fSSatish Balay {
553045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
55413f74950SBarry Smith   PetscInt     *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
55513f74950SBarry Smith   PetscInt     *ai = a->i,*ailen = a->ilen;
556d0f46423SBarry Smith   PetscInt     brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
55797e567efSBarry Smith   MatScalar    *ap,*aa = a->a;
55849b5e25fSSatish Balay 
55949b5e25fSSatish Balay   PetscFunctionBegin;
56049b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
56149b5e25fSSatish Balay     row = im[k]; brow = row/bs;
562e32f2f54SBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); */
563e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
56449b5e25fSSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
56549b5e25fSSatish Balay     nrow = ailen[brow];
56649b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
567e32f2f54SBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); */
568e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
56949b5e25fSSatish Balay       col  = in[l];
57049b5e25fSSatish Balay       bcol = col/bs;
57149b5e25fSSatish Balay       cidx = col%bs;
57249b5e25fSSatish Balay       ridx = row%bs;
57349b5e25fSSatish Balay       high = nrow;
57449b5e25fSSatish Balay       low  = 0; /* assume unsorted */
57549b5e25fSSatish Balay       while (high-low > 5) {
57649b5e25fSSatish Balay         t = (low+high)/2;
57749b5e25fSSatish Balay         if (rp[t] > bcol) high = t;
57849b5e25fSSatish Balay         else              low  = t;
57949b5e25fSSatish Balay       }
58049b5e25fSSatish Balay       for (i=low; i<high; i++) {
58149b5e25fSSatish Balay         if (rp[i] > bcol) break;
58249b5e25fSSatish Balay         if (rp[i] == bcol) {
58349b5e25fSSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
58449b5e25fSSatish Balay           goto finished;
58549b5e25fSSatish Balay         }
58649b5e25fSSatish Balay       }
58797e567efSBarry Smith       *v++ = 0.0;
58849b5e25fSSatish Balay finished:;
58949b5e25fSSatish Balay     }
59049b5e25fSSatish Balay   }
59149b5e25fSSatish Balay   PetscFunctionReturn(0);
59249b5e25fSSatish Balay }
59349b5e25fSSatish Balay 
59449b5e25fSSatish Balay 
5954a2ae208SSatish Balay #undef __FUNCT__
5964a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ"
59713f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
59849b5e25fSSatish Balay {
5990880e062SHong Zhang   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
6006849ba73SBarry Smith   PetscErrorCode    ierr;
601e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
60213f74950SBarry Smith   PetscInt          *imax      =a->imax,*ai=a->i,*ailen=a->ilen;
603d0f46423SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
604ace3abfcSBarry Smith   PetscBool         roworiented=a->roworiented;
605dd6ea824SBarry Smith   const PetscScalar *value     = v;
606f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
6070880e062SHong Zhang 
60849b5e25fSSatish Balay   PetscFunctionBegin;
60926fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
61026fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
61126fbe8dcSKarl Rupp 
6120880e062SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
6130880e062SHong Zhang     row = im[k];
6140880e062SHong Zhang     if (row < 0) continue;
6152515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
6162f7d4af7SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index row too large %D max %D",row,a->mbs-1);
6170880e062SHong Zhang #endif
6180880e062SHong Zhang     rp   = aj + ai[row];
6190880e062SHong Zhang     ap   = aa + bs2*ai[row];
6200880e062SHong Zhang     rmax = imax[row];
6210880e062SHong Zhang     nrow = ailen[row];
6220880e062SHong Zhang     low  = 0;
623818f2c47SBarry Smith     high = nrow;
6240880e062SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
6250880e062SHong Zhang       if (in[l] < 0) continue;
6260880e062SHong Zhang       col = in[l];
6272515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
6282f7d4af7SBarry Smith       if (col >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index column too large %D max %D",col,a->nbs-1);
629b1823623SSatish Balay #endif
630b98bf0e1SJed Brown       if (col < row) {
63126fbe8dcSKarl Rupp         if (a->ignore_ltriangular) continue; /* ignore lower triangular block */
63226fbe8dcSKarl Rupp         else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
633b98bf0e1SJed Brown       }
63426fbe8dcSKarl Rupp       if (roworiented) value = v + k*(stepval+bs)*bs + l*bs;
63526fbe8dcSKarl Rupp       else value = v + l*(stepval+bs)*bs + k*bs;
63626fbe8dcSKarl Rupp 
63726fbe8dcSKarl Rupp       if (col <= lastcol) low = 0;
63826fbe8dcSKarl Rupp       else high = nrow;
63926fbe8dcSKarl Rupp 
640e2ee6c50SBarry Smith       lastcol = col;
6410880e062SHong Zhang       while (high-low > 7) {
6420880e062SHong Zhang         t = (low+high)/2;
6430880e062SHong Zhang         if (rp[t] > col) high = t;
6440880e062SHong Zhang         else             low  = t;
6450880e062SHong Zhang       }
6460880e062SHong Zhang       for (i=low; i<high; i++) {
6470880e062SHong Zhang         if (rp[i] > col) break;
6480880e062SHong Zhang         if (rp[i] == col) {
6490880e062SHong Zhang           bap = ap +  bs2*i;
6500880e062SHong Zhang           if (roworiented) {
6510880e062SHong Zhang             if (is == ADD_VALUES) {
6520880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6530880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6540880e062SHong Zhang                   bap[jj] += *value++;
6550880e062SHong Zhang                 }
6560880e062SHong Zhang               }
6570880e062SHong Zhang             } else {
6580880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6590880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6600880e062SHong Zhang                   bap[jj] = *value++;
6610880e062SHong Zhang                 }
6620880e062SHong Zhang                }
6630880e062SHong Zhang             }
6640880e062SHong Zhang           } else {
6650880e062SHong Zhang             if (is == ADD_VALUES) {
6660880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6670880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6680880e062SHong Zhang                   *bap++ += *value++;
6690880e062SHong Zhang                 }
6700880e062SHong Zhang               }
6710880e062SHong Zhang             } else {
6720880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6730880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6740880e062SHong Zhang                   *bap++  = *value++;
6750880e062SHong Zhang                 }
6760880e062SHong Zhang               }
6770880e062SHong Zhang             }
6780880e062SHong Zhang           }
6790880e062SHong Zhang           goto noinsert2;
6800880e062SHong Zhang         }
6810880e062SHong Zhang       }
6820880e062SHong Zhang       if (nonew == 1) goto noinsert2;
6832f7d4af7SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", row, col);
684fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
685c03d1d03SSatish Balay       N = nrow++ - 1; high++;
6860880e062SHong Zhang       /* shift up all the later entries in this row */
6870880e062SHong Zhang       for (ii=N; ii>=i; ii--) {
6880880e062SHong Zhang         rp[ii+1] = rp[ii];
6890880e062SHong Zhang         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
6900880e062SHong Zhang       }
6910880e062SHong Zhang       if (N >= i) {
6920880e062SHong Zhang         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
6930880e062SHong Zhang       }
6940880e062SHong Zhang       rp[i] = col;
6950880e062SHong Zhang       bap   = ap +  bs2*i;
6960880e062SHong Zhang       if (roworiented) {
6970880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6980880e062SHong Zhang           for (jj=ii; jj<bs2; jj+=bs) {
6990880e062SHong Zhang             bap[jj] = *value++;
7000880e062SHong Zhang           }
7010880e062SHong Zhang         }
7020880e062SHong Zhang       } else {
7030880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
7040880e062SHong Zhang           for (jj=0; jj<bs; jj++) {
7050880e062SHong Zhang             *bap++ = *value++;
7060880e062SHong Zhang           }
7070880e062SHong Zhang         }
7080880e062SHong Zhang        }
7090880e062SHong Zhang     noinsert2:;
7100880e062SHong Zhang       low = i;
7110880e062SHong Zhang     }
7120880e062SHong Zhang     ailen[row] = nrow;
7130880e062SHong Zhang   }
7140880e062SHong Zhang   PetscFunctionReturn(0);
71549b5e25fSSatish Balay }
71649b5e25fSSatish Balay 
71764831d72SBarry Smith /*
71864831d72SBarry Smith     This is not yet used
71964831d72SBarry Smith */
7204a2ae208SSatish Balay #undef __FUNCT__
7214108e4d5SBarry Smith #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode"
7224108e4d5SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A)
7230def2e27SBarry Smith {
7240def2e27SBarry Smith   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
7250def2e27SBarry Smith   PetscErrorCode ierr;
7260def2e27SBarry Smith   const PetscInt *ai = a->i, *aj = a->j,*cols;
7270def2e27SBarry Smith   PetscInt       i   = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts;
728ace3abfcSBarry Smith   PetscBool      flag;
7290def2e27SBarry Smith 
7300def2e27SBarry Smith   PetscFunctionBegin;
731785e854fSJed Brown   ierr = PetscMalloc1(m,&ns);CHKERRQ(ierr);
7320def2e27SBarry Smith   while (i < m) {
7330def2e27SBarry Smith     nzx = ai[i+1] - ai[i];       /* Number of nonzeros */
7340def2e27SBarry Smith     /* Limits the number of elements in a node to 'a->inode.limit' */
7350def2e27SBarry Smith     for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
7360def2e27SBarry Smith       nzy = ai[j+1] - ai[j];
7370def2e27SBarry Smith       if (nzy != (nzx - j + i)) break;
7380def2e27SBarry Smith       ierr = PetscMemcmp(aj + ai[i] + j - i,aj + ai[j],nzy*sizeof(PetscInt),&flag);CHKERRQ(ierr);
7390def2e27SBarry Smith       if (!flag) break;
7400def2e27SBarry Smith     }
7410def2e27SBarry Smith     ns[node_count++] = blk_size;
74226fbe8dcSKarl Rupp 
7430def2e27SBarry Smith     i = j;
7440def2e27SBarry Smith   }
7450def2e27SBarry Smith   if (!a->inode.size && m && node_count > .9*m) {
7460def2e27SBarry Smith     ierr = PetscFree(ns);CHKERRQ(ierr);
7470def2e27SBarry Smith     ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
7480def2e27SBarry Smith   } else {
7490def2e27SBarry Smith     a->inode.node_count = node_count;
75026fbe8dcSKarl Rupp 
751785e854fSJed Brown     ierr = PetscMalloc1(node_count,&a->inode.size);CHKERRQ(ierr);
7523bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt));CHKERRQ(ierr);
75322d28d08SBarry Smith     ierr = PetscMemcpy(a->inode.size,ns,node_count*sizeof(PetscInt));CHKERRQ(ierr);
7540def2e27SBarry Smith     ierr = PetscFree(ns);CHKERRQ(ierr);
7550def2e27SBarry Smith     ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
7560def2e27SBarry Smith 
7570def2e27SBarry Smith     /* count collections of adjacent columns in each inode */
7580def2e27SBarry Smith     row = 0;
7590def2e27SBarry Smith     cnt = 0;
7600def2e27SBarry Smith     for (i=0; i<node_count; i++) {
7610def2e27SBarry Smith       cols = aj + ai[row] + a->inode.size[i];
7620def2e27SBarry Smith       nz   = ai[row+1] - ai[row] - a->inode.size[i];
7630def2e27SBarry Smith       for (j=1; j<nz; j++) {
76426fbe8dcSKarl Rupp         if (cols[j] != cols[j-1]+1) cnt++;
7650def2e27SBarry Smith       }
7660def2e27SBarry Smith       cnt++;
7670def2e27SBarry Smith       row += a->inode.size[i];
7680def2e27SBarry Smith     }
769785e854fSJed Brown     ierr = PetscMalloc1(2*cnt,&counts);CHKERRQ(ierr);
7700def2e27SBarry Smith     cnt  = 0;
7710def2e27SBarry Smith     row  = 0;
7720def2e27SBarry Smith     for (i=0; i<node_count; i++) {
7730def2e27SBarry Smith       cols = aj + ai[row] + a->inode.size[i];
7740def2e27SBarry Smith       counts[2*cnt] = cols[0];
7750def2e27SBarry Smith       nz   = ai[row+1] - ai[row] - a->inode.size[i];
7760def2e27SBarry Smith       cnt2 = 1;
7770def2e27SBarry Smith       for (j=1; j<nz; j++) {
7780def2e27SBarry Smith         if (cols[j] != cols[j-1]+1) {
7790def2e27SBarry Smith           counts[2*(cnt++)+1] = cnt2;
7800def2e27SBarry Smith           counts[2*cnt]       = cols[j];
7810def2e27SBarry Smith           cnt2 = 1;
7820def2e27SBarry Smith         } else cnt2++;
7830def2e27SBarry Smith       }
7840def2e27SBarry Smith       counts[2*(cnt++)+1] = cnt2;
7850def2e27SBarry Smith       row += a->inode.size[i];
7860def2e27SBarry Smith     }
78722d28d08SBarry Smith     ierr = PetscIntView(2*cnt,counts,0);CHKERRQ(ierr);
7880def2e27SBarry Smith   }
78938702af4SBarry Smith   PetscFunctionReturn(0);
79038702af4SBarry Smith }
79138702af4SBarry Smith 
79238702af4SBarry Smith #undef __FUNCT__
7934a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ"
794dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode)
79549b5e25fSSatish Balay {
79649b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
7976849ba73SBarry Smith   PetscErrorCode ierr;
79813f74950SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
799d0f46423SBarry Smith   PetscInt       m      = A->rmap->N,*ip,N,*ailen = a->ilen;
80013f74950SBarry Smith   PetscInt       mbs    = a->mbs,bs2 = a->bs2,rmax = 0;
80149b5e25fSSatish Balay   MatScalar      *aa    = a->a,*ap;
80249b5e25fSSatish Balay 
80349b5e25fSSatish Balay   PetscFunctionBegin;
80449b5e25fSSatish Balay   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
80549b5e25fSSatish Balay 
80649b5e25fSSatish Balay   if (m) rmax = ailen[0];
80749b5e25fSSatish Balay   for (i=1; i<mbs; i++) {
80849b5e25fSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
80949b5e25fSSatish Balay     fshift += imax[i-1] - ailen[i-1];
81049b5e25fSSatish Balay     rmax    = PetscMax(rmax,ailen[i]);
81149b5e25fSSatish Balay     if (fshift) {
81249b5e25fSSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
81349b5e25fSSatish Balay       N  = ailen[i];
81449b5e25fSSatish Balay       for (j=0; j<N; j++) {
81549b5e25fSSatish Balay         ip[j-fshift] = ip[j];
81649b5e25fSSatish Balay         ierr         = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
81749b5e25fSSatish Balay       }
81849b5e25fSSatish Balay     }
81949b5e25fSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
82049b5e25fSSatish Balay   }
82149b5e25fSSatish Balay   if (mbs) {
82249b5e25fSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
82349b5e25fSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
82449b5e25fSSatish Balay   }
82549b5e25fSSatish Balay   /* reset ilen and imax for each row */
82649b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
82749b5e25fSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
82849b5e25fSSatish Balay   }
8296c6c5352SBarry Smith   a->nz = ai[mbs];
83049b5e25fSSatish Balay 
831b424e231SHong Zhang   /* diagonals may have moved, reset it */
832b424e231SHong Zhang   if (a->diag) {
8332ed38d0bSJed Brown     ierr = PetscMemcpy(a->diag,ai,mbs*sizeof(PetscInt));CHKERRQ(ierr);
83449b5e25fSSatish Balay   }
83526fbe8dcSKarl Rupp   if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
83626fbe8dcSKarl Rupp 
837d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
838ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
839ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
84026fbe8dcSKarl Rupp 
8418e58a170SBarry Smith   A->info.mallocs    += a->reallocs;
84249b5e25fSSatish Balay   a->reallocs         = 0;
84349b5e25fSSatish Balay   A->info.nz_unneeded = (PetscReal)fshift*bs2;
844061b2667SBarry Smith   a->idiagvalid       = PETSC_FALSE;
8454dcd73b1SHong Zhang   a->rmax             = rmax;
84638702af4SBarry Smith 
84738702af4SBarry Smith   if (A->cmap->n < 65536 && A->cmap->bs == 1) {
84844e1c64aSLisandro Dalcin     if (a->jshort && a->free_jshort) {
84917803ae8SHong Zhang       /* when matrix data structure is changed, previous jshort must be replaced */
85017803ae8SHong Zhang       ierr = PetscFree(a->jshort);CHKERRQ(ierr);
85117803ae8SHong Zhang     }
852785e854fSJed Brown     ierr = PetscMalloc1(a->i[A->rmap->n],&a->jshort);CHKERRQ(ierr);
8533bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short));CHKERRQ(ierr);
85438702af4SBarry Smith     for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i];
85538702af4SBarry Smith     A->ops->mult   = MatMult_SeqSBAIJ_1_ushort;
85641f059aeSBarry Smith     A->ops->sor    = MatSOR_SeqSBAIJ_ushort;
8574da8f245SBarry Smith     a->free_jshort = PETSC_TRUE;
85838702af4SBarry Smith   }
85949b5e25fSSatish Balay   PetscFunctionReturn(0);
86049b5e25fSSatish Balay }
86149b5e25fSSatish Balay 
86249b5e25fSSatish Balay /*
86349b5e25fSSatish Balay    This function returns an array of flags which indicate the locations of contiguous
86449b5e25fSSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
86549b5e25fSSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
86649b5e25fSSatish Balay    Assume: sizes should be long enough to hold all the values.
86749b5e25fSSatish Balay */
8684a2ae208SSatish Balay #undef __FUNCT__
8694a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks"
87013f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
87149b5e25fSSatish Balay {
87213f74950SBarry Smith   PetscInt  i,j,k,row;
873ace3abfcSBarry Smith   PetscBool flg;
87449b5e25fSSatish Balay 
87549b5e25fSSatish Balay   PetscFunctionBegin;
87649b5e25fSSatish Balay   for (i=0,j=0; i<n; j++) {
87749b5e25fSSatish Balay     row = idx[i];
87849b5e25fSSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
87949b5e25fSSatish Balay       sizes[j] = 1;
88049b5e25fSSatish Balay       i++;
88149b5e25fSSatish Balay     } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */
88249b5e25fSSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
88349b5e25fSSatish Balay       i++;
88449b5e25fSSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
88549b5e25fSSatish Balay       flg = PETSC_TRUE;
88649b5e25fSSatish Balay       for (k=1; k<bs; k++) {
88749b5e25fSSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
88849b5e25fSSatish Balay           flg = PETSC_FALSE;
88949b5e25fSSatish Balay           break;
89049b5e25fSSatish Balay         }
89149b5e25fSSatish Balay       }
892abc0a331SBarry Smith       if (flg) { /* No break in the bs */
89349b5e25fSSatish Balay         sizes[j] = bs;
89449b5e25fSSatish Balay         i       += bs;
89549b5e25fSSatish Balay       } else {
89649b5e25fSSatish Balay         sizes[j] = 1;
89749b5e25fSSatish Balay         i++;
89849b5e25fSSatish Balay       }
89949b5e25fSSatish Balay     }
90049b5e25fSSatish Balay   }
90149b5e25fSSatish Balay   *bs_max = j;
90249b5e25fSSatish Balay   PetscFunctionReturn(0);
90349b5e25fSSatish Balay }
90449b5e25fSSatish Balay 
90549b5e25fSSatish Balay 
90649b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
90749b5e25fSSatish Balay    Any a(i,j) with i>j input by user is ingored.
90849b5e25fSSatish Balay */
90949b5e25fSSatish Balay 
9104a2ae208SSatish Balay #undef __FUNCT__
9114a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ"
91213f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
91349b5e25fSSatish Balay {
91449b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
9156849ba73SBarry Smith   PetscErrorCode ierr;
916e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
91713f74950SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
918d0f46423SBarry Smith   PetscInt       *aj  =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
91913f74950SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
92049b5e25fSSatish Balay   MatScalar      *ap,value,*aa=a->a,*bap;
92149b5e25fSSatish Balay 
92249b5e25fSSatish Balay   PetscFunctionBegin;
92349b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
92449b5e25fSSatish Balay     row  = im[k];       /* row number */
92549b5e25fSSatish Balay     brow = row/bs;      /* block row number */
92649b5e25fSSatish Balay     if (row < 0) continue;
9272515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
928e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
92949b5e25fSSatish Balay #endif
93049b5e25fSSatish Balay     rp   = aj + ai[brow]; /*ptr to beginning of column value of the row block*/
93149b5e25fSSatish Balay     ap   = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/
93249b5e25fSSatish Balay     rmax = imax[brow];  /* maximum space allocated for this row */
93349b5e25fSSatish Balay     nrow = ailen[brow]; /* actual length of this row */
93449b5e25fSSatish Balay     low  = 0;
93549b5e25fSSatish Balay 
93649b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
93749b5e25fSSatish Balay       if (in[l] < 0) continue;
9382515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
939e32f2f54SBarry Smith       if (in[l] >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->rmap->N-1);
94049b5e25fSSatish Balay #endif
94149b5e25fSSatish Balay       col  = in[l];
94249b5e25fSSatish Balay       bcol = col/bs;              /* block col number */
94349b5e25fSSatish Balay 
944941593c8SHong Zhang       if (brow > bcol) {
94526fbe8dcSKarl Rupp         if (a->ignore_ltriangular) continue; /* ignore lower triangular values */
94626fbe8dcSKarl Rupp         else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
947941593c8SHong Zhang       }
948f4989cb3SHong Zhang 
94949b5e25fSSatish Balay       ridx = row % bs; cidx = col % bs; /*row and col index inside the block */
9508549e402SHong Zhang       if ((brow==bcol && ridx<=cidx) || (brow<bcol)) {
95149b5e25fSSatish Balay         /* element value a(k,l) */
95226fbe8dcSKarl Rupp         if (roworiented) value = v[l + k*n];
95326fbe8dcSKarl Rupp         else value = v[k + l*m];
95449b5e25fSSatish Balay 
95549b5e25fSSatish Balay         /* move pointer bap to a(k,l) quickly and add/insert value */
95626fbe8dcSKarl Rupp         if (col <= lastcol) low = 0;
95726fbe8dcSKarl Rupp         high = nrow;
958e2ee6c50SBarry Smith         lastcol = col;
95949b5e25fSSatish Balay         while (high-low > 7) {
96049b5e25fSSatish Balay           t = (low+high)/2;
96149b5e25fSSatish Balay           if (rp[t] > bcol) high = t;
96249b5e25fSSatish Balay           else              low  = t;
96349b5e25fSSatish Balay         }
96449b5e25fSSatish Balay         for (i=low; i<high; i++) {
96549b5e25fSSatish Balay           if (rp[i] > bcol) break;
96649b5e25fSSatish Balay           if (rp[i] == bcol) {
96749b5e25fSSatish Balay             bap = ap +  bs2*i + bs*cidx + ridx;
96849b5e25fSSatish Balay             if (is == ADD_VALUES) *bap += value;
96949b5e25fSSatish Balay             else                  *bap  = value;
9708549e402SHong Zhang             /* for diag block, add/insert its symmetric element a(cidx,ridx) */
9718549e402SHong Zhang             if (brow == bcol && ridx < cidx) {
9728549e402SHong Zhang               bap = ap +  bs2*i + bs*ridx + cidx;
9738549e402SHong Zhang               if (is == ADD_VALUES) *bap += value;
9748549e402SHong Zhang               else                  *bap  = value;
9758549e402SHong Zhang             }
97649b5e25fSSatish Balay             goto noinsert1;
97749b5e25fSSatish Balay           }
97849b5e25fSSatish Balay         }
97949b5e25fSSatish Balay 
98049b5e25fSSatish Balay         if (nonew == 1) goto noinsert1;
981e32f2f54SBarry Smith         if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
982fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
98349b5e25fSSatish Balay 
984c03d1d03SSatish Balay         N = nrow++ - 1; high++;
98549b5e25fSSatish Balay         /* shift up all the later entries in this row */
98649b5e25fSSatish Balay         for (ii=N; ii>=i; ii--) {
98749b5e25fSSatish Balay           rp[ii+1] = rp[ii];
98849b5e25fSSatish Balay           ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
98949b5e25fSSatish Balay         }
99049b5e25fSSatish Balay         if (N>=i) {
99149b5e25fSSatish Balay           ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
99249b5e25fSSatish Balay         }
99349b5e25fSSatish Balay         rp[i]                      = bcol;
99449b5e25fSSatish Balay         ap[bs2*i + bs*cidx + ridx] = value;
995e56f5c9eSBarry Smith         A->nonzerostate++;
99649b5e25fSSatish Balay noinsert1:;
99749b5e25fSSatish Balay         low = i;
9988549e402SHong Zhang       }
99949b5e25fSSatish Balay     }   /* end of loop over added columns */
100049b5e25fSSatish Balay     ailen[brow] = nrow;
100149b5e25fSSatish Balay   }   /* end of loop over added rows */
100249b5e25fSSatish Balay   PetscFunctionReturn(0);
100349b5e25fSSatish Balay }
100449b5e25fSSatish Balay 
10054a2ae208SSatish Balay #undef __FUNCT__
10064d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ"
10070481f469SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info)
100849b5e25fSSatish Balay {
10094ccecd49SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inA->data;
101049b5e25fSSatish Balay   Mat            outA;
1011dfbe8321SBarry Smith   PetscErrorCode ierr;
1012ace3abfcSBarry Smith   PetscBool      row_identity;
101349b5e25fSSatish Balay 
101449b5e25fSSatish Balay   PetscFunctionBegin;
1015e32f2f54SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc");
1016c84f5b01SHong Zhang   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
1017e32f2f54SBarry Smith   if (!row_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported");
1018e32f2f54SBarry Smith   if (inA->rmap->bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %D is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */
1019c84f5b01SHong Zhang 
102049b5e25fSSatish Balay   outA            = inA;
1021d5f3da31SBarry Smith   inA->factortype = MAT_FACTOR_ICC;
102249b5e25fSSatish Balay 
10231a3463dfSHong Zhang   ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr);
1024d595f711SHong Zhang   ierr = MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity);CHKERRQ(ierr);
102549b5e25fSSatish Balay 
1026c3122656SLisandro Dalcin   ierr   = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
10276bf464f9SBarry Smith   ierr   = ISDestroy(&a->row);CHKERRQ(ierr);
1028c84f5b01SHong Zhang   a->row = row;
1029c3122656SLisandro Dalcin   ierr   = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
10306bf464f9SBarry Smith   ierr   = ISDestroy(&a->col);CHKERRQ(ierr);
1031c84f5b01SHong Zhang   a->col = row;
1032c84f5b01SHong Zhang 
1033c84f5b01SHong Zhang   /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */
1034c84f5b01SHong Zhang   if (a->icol) {ierr = ISInvertPermutation(row,PETSC_DECIDE, &a->icol);CHKERRQ(ierr);}
10353bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr);
103649b5e25fSSatish Balay 
103749b5e25fSSatish Balay   if (!a->solve_work) {
1038854ce69bSBarry Smith     ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr);
10393bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
104049b5e25fSSatish Balay   }
104149b5e25fSSatish Balay 
1042719d5645SBarry Smith   ierr = MatCholeskyFactorNumeric(outA,inA,info);CHKERRQ(ierr);
104349b5e25fSSatish Balay   PetscFunctionReturn(0);
104449b5e25fSSatish Balay }
1045950f1e5bSHong Zhang 
10464a2ae208SSatish Balay #undef __FUNCT__
10474a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ"
10487087cfbeSBarry Smith PetscErrorCode  MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices)
104949b5e25fSSatish Balay {
1050045c9aa0SHong Zhang   Mat_SeqSBAIJ   *baij = (Mat_SeqSBAIJ*)mat->data;
105113f74950SBarry Smith   PetscInt       i,nz,n;
10527827cd58SJed Brown   PetscErrorCode ierr;
105349b5e25fSSatish Balay 
105449b5e25fSSatish Balay   PetscFunctionBegin;
10556c6c5352SBarry Smith   nz = baij->maxnz;
1056d0f46423SBarry Smith   n  = mat->cmap->n;
105726fbe8dcSKarl Rupp   for (i=0; i<nz; i++) baij->j[i] = indices[i];
105826fbe8dcSKarl Rupp 
10596c6c5352SBarry Smith   baij->nz = nz;
106026fbe8dcSKarl Rupp   for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i];
106126fbe8dcSKarl Rupp 
10627827cd58SJed Brown   ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
106349b5e25fSSatish Balay   PetscFunctionReturn(0);
106449b5e25fSSatish Balay }
106549b5e25fSSatish Balay 
10664a2ae208SSatish Balay #undef __FUNCT__
10674a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices"
106849b5e25fSSatish Balay /*@
106919585528SSatish Balay   MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
107049b5e25fSSatish Balay   in the matrix.
107149b5e25fSSatish Balay 
107249b5e25fSSatish Balay   Input Parameters:
107319585528SSatish Balay   +  mat     - the SeqSBAIJ matrix
107449b5e25fSSatish Balay   -  indices - the column indices
107549b5e25fSSatish Balay 
107649b5e25fSSatish Balay   Level: advanced
107749b5e25fSSatish Balay 
107849b5e25fSSatish Balay   Notes:
107949b5e25fSSatish Balay   This can be called if you have precomputed the nonzero structure of the
108049b5e25fSSatish Balay   matrix and want to provide it to the matrix object to improve the performance
108149b5e25fSSatish Balay   of the MatSetValues() operation.
108249b5e25fSSatish Balay 
108349b5e25fSSatish Balay   You MUST have set the correct numbers of nonzeros per row in the call to
1084d1be2dadSMatthew Knepley   MatCreateSeqSBAIJ(), and the columns indices MUST be sorted.
108549b5e25fSSatish Balay 
1086ab9f2c04SSatish Balay   MUST be called before any calls to MatSetValues()
108749b5e25fSSatish Balay 
1088ab9f2c04SSatish Balay   .seealso: MatCreateSeqSBAIJ
108949b5e25fSSatish Balay @*/
10907087cfbeSBarry Smith PetscErrorCode  MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices)
109149b5e25fSSatish Balay {
10924ac538c5SBarry Smith   PetscErrorCode ierr;
109349b5e25fSSatish Balay 
109449b5e25fSSatish Balay   PetscFunctionBegin;
10950700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
10964482741eSBarry Smith   PetscValidPointer(indices,2);
10974ac538c5SBarry Smith   ierr = PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr);
109849b5e25fSSatish Balay   PetscFunctionReturn(0);
109949b5e25fSSatish Balay }
110049b5e25fSSatish Balay 
11014a2ae208SSatish Balay #undef __FUNCT__
11023c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqSBAIJ"
11033c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str)
11043c896bc6SHong Zhang {
11053c896bc6SHong Zhang   PetscErrorCode ierr;
11063c896bc6SHong Zhang 
11073c896bc6SHong Zhang   PetscFunctionBegin;
11083c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
11093c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
11103c896bc6SHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
11113c896bc6SHong Zhang     Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data;
11123c896bc6SHong Zhang 
1113e7e72b3dSBarry Smith     if (a->i[A->rmap->N] != b->i[B->rmap->N]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
1114d0f46423SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr);
11153c896bc6SHong Zhang   } else {
1116f5edf698SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
11173c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1118f5edf698SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
11193c896bc6SHong Zhang   }
11203c896bc6SHong Zhang   PetscFunctionReturn(0);
11213c896bc6SHong Zhang }
11223c896bc6SHong Zhang 
11233c896bc6SHong Zhang #undef __FUNCT__
11244994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqSBAIJ"
11254994cf47SJed Brown PetscErrorCode MatSetUp_SeqSBAIJ(Mat A)
1126273d9f13SBarry Smith {
1127dfbe8321SBarry Smith   PetscErrorCode ierr;
1128273d9f13SBarry Smith 
1129273d9f13SBarry Smith   PetscFunctionBegin;
1130535b19f3SBarry Smith   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr);
1131273d9f13SBarry Smith   PetscFunctionReturn(0);
1132273d9f13SBarry Smith }
1133273d9f13SBarry Smith 
1134a6ece127SHong Zhang #undef __FUNCT__
11358c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJGetArray_SeqSBAIJ"
11368c778c55SBarry Smith PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1137a6ece127SHong Zhang {
1138a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
11395fd66863SKarl Rupp 
1140a6ece127SHong Zhang   PetscFunctionBegin;
1141a6ece127SHong Zhang   *array = a->a;
1142a6ece127SHong Zhang   PetscFunctionReturn(0);
1143a6ece127SHong Zhang }
1144a6ece127SHong Zhang 
1145a6ece127SHong Zhang #undef __FUNCT__
11468c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJRestoreArray_SeqSBAIJ"
11478c778c55SBarry Smith PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1148a6ece127SHong Zhang {
1149a6ece127SHong Zhang   PetscFunctionBegin;
1150a6ece127SHong Zhang   PetscFunctionReturn(0);
1151a6ece127SHong Zhang }
1152a6ece127SHong Zhang 
115342ee4b1aSHong Zhang #undef __FUNCT__
115452768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqSBAIJ"
115552768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz)
115652768537SHong Zhang {
1157b264fe52SHong Zhang   PetscInt       bs = Y->rmap->bs,mbs = Y->rmap->N/bs;
115852768537SHong Zhang   Mat_SeqSBAIJ   *x = (Mat_SeqSBAIJ*)X->data;
115952768537SHong Zhang   Mat_SeqSBAIJ   *y = (Mat_SeqSBAIJ*)Y->data;
1160b264fe52SHong Zhang   PetscErrorCode ierr;
116152768537SHong Zhang 
116252768537SHong Zhang   PetscFunctionBegin;
116352768537SHong Zhang   /* Set the number of nonzeros in the new matrix */
1164b264fe52SHong Zhang   ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr);
116552768537SHong Zhang   PetscFunctionReturn(0);
116652768537SHong Zhang }
116752768537SHong Zhang 
116852768537SHong Zhang #undef __FUNCT__
116942ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ"
1170f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
117142ee4b1aSHong Zhang {
117242ee4b1aSHong Zhang   Mat_SeqSBAIJ   *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data;
1173dfbe8321SBarry Smith   PetscErrorCode ierr;
117431ce2d13SHong Zhang   PetscInt       bs=Y->rmap->bs,bs2=bs*bs;
1175e838b9e7SJed Brown   PetscBLASInt   one = 1;
117642ee4b1aSHong Zhang 
117742ee4b1aSHong Zhang   PetscFunctionBegin;
117842ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
1179f4df32b1SMatthew Knepley     PetscScalar  alpha = a;
1180c5df96a5SBarry Smith     PetscBLASInt bnz;
1181c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
11828b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
1183a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1184ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1185ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr);
1186ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1187ab784542SHong Zhang     ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr);
118842ee4b1aSHong Zhang   } else {
118952768537SHong Zhang     Mat      B;
119052768537SHong Zhang     PetscInt *nnz;
119152768537SHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
1192f5edf698SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
119352768537SHong Zhang     ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr);
119452768537SHong Zhang     ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr);
119552768537SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
119652768537SHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
119752768537SHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
119852768537SHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
119952768537SHong Zhang     ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr);
120052768537SHong Zhang     ierr = MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz);CHKERRQ(ierr);
120152768537SHong Zhang     ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
120252768537SHong Zhang 
120352768537SHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
120452768537SHong Zhang 
120528be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
120652768537SHong Zhang     ierr = PetscFree(nnz);CHKERRQ(ierr);
1207f5edf698SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
120852768537SHong Zhang     ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr);
120942ee4b1aSHong Zhang   }
121042ee4b1aSHong Zhang   PetscFunctionReturn(0);
121142ee4b1aSHong Zhang }
121242ee4b1aSHong Zhang 
1213efcf0fc3SBarry Smith #undef __FUNCT__
1214efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ"
1215ace3abfcSBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool  *flg)
1216efcf0fc3SBarry Smith {
1217efcf0fc3SBarry Smith   PetscFunctionBegin;
1218efcf0fc3SBarry Smith   *flg = PETSC_TRUE;
1219efcf0fc3SBarry Smith   PetscFunctionReturn(0);
1220efcf0fc3SBarry Smith }
1221efcf0fc3SBarry Smith 
1222efcf0fc3SBarry Smith #undef __FUNCT__
1223efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ"
1224ace3abfcSBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool  *flg)
1225efcf0fc3SBarry Smith {
1226efcf0fc3SBarry Smith   PetscFunctionBegin;
1227efcf0fc3SBarry Smith   *flg = PETSC_TRUE;
1228efcf0fc3SBarry Smith   PetscFunctionReturn(0);
1229efcf0fc3SBarry Smith }
1230efcf0fc3SBarry Smith 
1231efcf0fc3SBarry Smith #undef __FUNCT__
1232efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ"
1233ace3abfcSBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool  *flg)
1234efcf0fc3SBarry Smith {
1235efcf0fc3SBarry Smith   PetscFunctionBegin;
1236efcf0fc3SBarry Smith   *flg = PETSC_FALSE;
1237efcf0fc3SBarry Smith   PetscFunctionReturn(0);
1238efcf0fc3SBarry Smith }
1239efcf0fc3SBarry Smith 
124099cafbc1SBarry Smith #undef __FUNCT__
124199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqSBAIJ"
124299cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A)
124399cafbc1SBarry Smith {
124499cafbc1SBarry Smith   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
124599cafbc1SBarry Smith   PetscInt     i,nz = a->bs2*a->i[a->mbs];
1246dd6ea824SBarry Smith   MatScalar    *aa = a->a;
124799cafbc1SBarry Smith 
124899cafbc1SBarry Smith   PetscFunctionBegin;
124999cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
125099cafbc1SBarry Smith   PetscFunctionReturn(0);
125199cafbc1SBarry Smith }
125299cafbc1SBarry Smith 
125399cafbc1SBarry Smith #undef __FUNCT__
125499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqSBAIJ"
125599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A)
125699cafbc1SBarry Smith {
125799cafbc1SBarry Smith   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
125899cafbc1SBarry Smith   PetscInt     i,nz = a->bs2*a->i[a->mbs];
1259dd6ea824SBarry Smith   MatScalar    *aa = a->a;
126099cafbc1SBarry Smith 
126199cafbc1SBarry Smith   PetscFunctionBegin;
126299cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
126399cafbc1SBarry Smith   PetscFunctionReturn(0);
126499cafbc1SBarry Smith }
126599cafbc1SBarry Smith 
12663bededecSBarry Smith #undef __FUNCT__
12673bededecSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqSBAIJ"
12683bededecSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
12693bededecSBarry Smith {
12703bededecSBarry Smith   Mat_SeqSBAIJ      *baij=(Mat_SeqSBAIJ*)A->data;
12713bededecSBarry Smith   PetscErrorCode    ierr;
12723bededecSBarry Smith   PetscInt          i,j,k,count;
12733bededecSBarry Smith   PetscInt          bs   =A->rmap->bs,bs2=baij->bs2,row,col;
12743bededecSBarry Smith   PetscScalar       zero = 0.0;
12753bededecSBarry Smith   MatScalar         *aa;
12763bededecSBarry Smith   const PetscScalar *xx;
12773bededecSBarry Smith   PetscScalar       *bb;
127856777dd2SBarry Smith   PetscBool         *zeroed,vecs = PETSC_FALSE;
12793bededecSBarry Smith 
12803bededecSBarry Smith   PetscFunctionBegin;
12813bededecSBarry Smith   /* fix right hand side if needed */
12823bededecSBarry Smith   if (x && b) {
12833bededecSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
12843bededecSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
128556777dd2SBarry Smith     vecs = PETSC_TRUE;
12863bededecSBarry Smith   }
12873bededecSBarry Smith 
12883bededecSBarry Smith   /* zero the columns */
12891795a4d1SJed Brown   ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr);
12903bededecSBarry Smith   for (i=0; i<is_n; i++) {
12913bededecSBarry Smith     if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]);
12923bededecSBarry Smith     zeroed[is_idx[i]] = PETSC_TRUE;
12933bededecSBarry Smith   }
129456777dd2SBarry Smith   if (vecs) {
129556777dd2SBarry Smith     for (i=0; i<A->rmap->N; i++) {
129656777dd2SBarry Smith       row = i/bs;
129756777dd2SBarry Smith       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
129856777dd2SBarry Smith         for (k=0; k<bs; k++) {
129956777dd2SBarry Smith           col = bs*baij->j[j] + k;
130056777dd2SBarry Smith           if (col <= i) continue;
130156777dd2SBarry Smith           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
130226fbe8dcSKarl Rupp           if (!zeroed[i] && zeroed[col]) bb[i]   -= aa[0]*xx[col];
130326fbe8dcSKarl Rupp           if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i];
130456777dd2SBarry Smith         }
130556777dd2SBarry Smith       }
130656777dd2SBarry Smith     }
130726fbe8dcSKarl Rupp     for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]];
130856777dd2SBarry Smith   }
130956777dd2SBarry Smith 
13103bededecSBarry Smith   for (i=0; i<A->rmap->N; i++) {
13113bededecSBarry Smith     if (!zeroed[i]) {
13123bededecSBarry Smith       row = i/bs;
13133bededecSBarry Smith       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
13143bededecSBarry Smith         for (k=0; k<bs; k++) {
13153bededecSBarry Smith           col = bs*baij->j[j] + k;
13163bededecSBarry Smith           if (zeroed[col]) {
13173bededecSBarry Smith             aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
13183bededecSBarry Smith             aa[0] = 0.0;
13193bededecSBarry Smith           }
13203bededecSBarry Smith         }
13213bededecSBarry Smith       }
13223bededecSBarry Smith     }
13233bededecSBarry Smith   }
13243bededecSBarry Smith   ierr = PetscFree(zeroed);CHKERRQ(ierr);
132556777dd2SBarry Smith   if (vecs) {
132656777dd2SBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
132756777dd2SBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
132856777dd2SBarry Smith   }
13293bededecSBarry Smith 
13303bededecSBarry Smith   /* zero the rows */
13313bededecSBarry Smith   for (i=0; i<is_n; i++) {
13323bededecSBarry Smith     row   = is_idx[i];
13333bededecSBarry Smith     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
13343bededecSBarry Smith     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
13353bededecSBarry Smith     for (k=0; k<count; k++) {
13363bededecSBarry Smith       aa[0] =  zero;
13373bededecSBarry Smith       aa   += bs;
13383bededecSBarry Smith     }
13393bededecSBarry Smith     if (diag != 0.0) {
13403bededecSBarry Smith       ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
13413bededecSBarry Smith     }
13423bededecSBarry Smith   }
13433bededecSBarry Smith   ierr = MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13443bededecSBarry Smith   PetscFunctionReturn(0);
13453bededecSBarry Smith }
13463bededecSBarry Smith 
13477d68702bSBarry Smith #undef __FUNCT__
13487d68702bSBarry Smith #define __FUNCT__ "MatShift_SeqSBAIJ"
13497d68702bSBarry Smith PetscErrorCode MatShift_SeqSBAIJ(Mat Y,PetscScalar a)
13507d68702bSBarry Smith {
13517d68702bSBarry Smith   PetscErrorCode ierr;
13527d68702bSBarry Smith   Mat_SeqSBAIJ    *aij = (Mat_SeqSBAIJ*)Y->data;
13537d68702bSBarry Smith 
13547d68702bSBarry Smith   PetscFunctionBegin;
13556f33a894SBarry Smith   if (!Y->preallocated || !aij->nz) {
13567d68702bSBarry Smith     ierr = MatSeqSBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
13577d68702bSBarry Smith   }
13587d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
13597d68702bSBarry Smith   PetscFunctionReturn(0);
13607d68702bSBarry Smith }
13617d68702bSBarry Smith 
136249b5e25fSSatish Balay /* -------------------------------------------------------------------*/
13633964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
136449b5e25fSSatish Balay                                        MatGetRow_SeqSBAIJ,
136549b5e25fSSatish Balay                                        MatRestoreRow_SeqSBAIJ,
136649b5e25fSSatish Balay                                        MatMult_SeqSBAIJ_N,
136797304618SKris Buschelman                                /*  4*/ MatMultAdd_SeqSBAIJ_N,
1368431c96f7SBarry Smith                                        MatMult_SeqSBAIJ_N,       /* transpose versions are same as non-transpose versions */
1369e005ede5SBarry Smith                                        MatMultAdd_SeqSBAIJ_N,
1370db4efbfdSBarry Smith                                        0,
137149b5e25fSSatish Balay                                        0,
137249b5e25fSSatish Balay                                        0,
137397304618SKris Buschelman                                /* 10*/ 0,
137449b5e25fSSatish Balay                                        0,
1375c078aec8SLisandro Dalcin                                        MatCholeskyFactor_SeqSBAIJ,
137641f059aeSBarry Smith                                        MatSOR_SeqSBAIJ,
137749b5e25fSSatish Balay                                        MatTranspose_SeqSBAIJ,
137897304618SKris Buschelman                                /* 15*/ MatGetInfo_SeqSBAIJ,
137949b5e25fSSatish Balay                                        MatEqual_SeqSBAIJ,
138049b5e25fSSatish Balay                                        MatGetDiagonal_SeqSBAIJ,
138149b5e25fSSatish Balay                                        MatDiagonalScale_SeqSBAIJ,
138249b5e25fSSatish Balay                                        MatNorm_SeqSBAIJ,
138397304618SKris Buschelman                                /* 20*/ 0,
138449b5e25fSSatish Balay                                        MatAssemblyEnd_SeqSBAIJ,
138549b5e25fSSatish Balay                                        MatSetOption_SeqSBAIJ,
138649b5e25fSSatish Balay                                        MatZeroEntries_SeqSBAIJ,
1387d519adbfSMatthew Knepley                                /* 24*/ 0,
138849b5e25fSSatish Balay                                        0,
138949b5e25fSSatish Balay                                        0,
1390db4efbfdSBarry Smith                                        0,
1391db4efbfdSBarry Smith                                        0,
13924994cf47SJed Brown                                /* 29*/ MatSetUp_SeqSBAIJ,
1393c464158bSHong Zhang                                        0,
1394db4efbfdSBarry Smith                                        0,
13958c778c55SBarry Smith                                        0,
13968c778c55SBarry Smith                                        0,
1397d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_SeqSBAIJ,
1398719d5645SBarry Smith                                        0,
1399719d5645SBarry Smith                                        0,
140049b5e25fSSatish Balay                                        0,
1401c84f5b01SHong Zhang                                        MatICCFactor_SeqSBAIJ,
1402d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_SeqSBAIJ,
140349b5e25fSSatish Balay                                        MatGetSubMatrices_SeqSBAIJ,
140449b5e25fSSatish Balay                                        MatIncreaseOverlap_SeqSBAIJ,
140549b5e25fSSatish Balay                                        MatGetValues_SeqSBAIJ,
14063c896bc6SHong Zhang                                        MatCopy_SeqSBAIJ,
1407d519adbfSMatthew Knepley                                /* 44*/ 0,
140849b5e25fSSatish Balay                                        MatScale_SeqSBAIJ,
14097d68702bSBarry Smith                                        MatShift_SeqSBAIJ,
141049b5e25fSSatish Balay                                        0,
14113bededecSBarry Smith                                        MatZeroRowsColumns_SeqSBAIJ,
1412f73d5cc4SBarry Smith                                /* 49*/ 0,
141349b5e25fSSatish Balay                                        MatGetRowIJ_SeqSBAIJ,
141449b5e25fSSatish Balay                                        MatRestoreRowIJ_SeqSBAIJ,
141549b5e25fSSatish Balay                                        0,
141649b5e25fSSatish Balay                                        0,
1417d519adbfSMatthew Knepley                                /* 54*/ 0,
141849b5e25fSSatish Balay                                        0,
141949b5e25fSSatish Balay                                        0,
142049b5e25fSSatish Balay                                        0,
142149b5e25fSSatish Balay                                        MatSetValuesBlocked_SeqSBAIJ,
1422d519adbfSMatthew Knepley                                /* 59*/ MatGetSubMatrix_SeqSBAIJ,
142349b5e25fSSatish Balay                                        0,
142449b5e25fSSatish Balay                                        0,
1425357abbc8SBarry Smith                                        0,
1426d959ec07SHong Zhang                                        0,
1427d519adbfSMatthew Knepley                                /* 64*/ 0,
1428d959ec07SHong Zhang                                        0,
1429d959ec07SHong Zhang                                        0,
1430d959ec07SHong Zhang                                        0,
1431d959ec07SHong Zhang                                        0,
1432d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_SeqSBAIJ,
14333e0d88b5SBarry Smith                                        0,
14343e0d88b5SBarry Smith                                        0,
14353e0d88b5SBarry Smith                                        0,
14363e0d88b5SBarry Smith                                        0,
1437d519adbfSMatthew Knepley                                /* 74*/ 0,
14383e0d88b5SBarry Smith                                        0,
14393e0d88b5SBarry Smith                                        0,
14403e0d88b5SBarry Smith                                        0,
14413e0d88b5SBarry Smith                                        0,
1442d519adbfSMatthew Knepley                                /* 79*/ 0,
14433e0d88b5SBarry Smith                                        0,
14443e0d88b5SBarry Smith                                        0,
144597304618SKris Buschelman                                        MatGetInertia_SeqSBAIJ,
14465bba2384SShri Abhyankar                                        MatLoad_SeqSBAIJ,
1447d519adbfSMatthew Knepley                                /* 84*/ MatIsSymmetric_SeqSBAIJ,
1448865e5f61SKris Buschelman                                        MatIsHermitian_SeqSBAIJ,
1449efcf0fc3SBarry Smith                                        MatIsStructurallySymmetric_SeqSBAIJ,
1450865e5f61SKris Buschelman                                        0,
1451865e5f61SKris Buschelman                                        0,
1452d519adbfSMatthew Knepley                                /* 89*/ 0,
1453865e5f61SKris Buschelman                                        0,
1454865e5f61SKris Buschelman                                        0,
1455865e5f61SKris Buschelman                                        0,
1456865e5f61SKris Buschelman                                        0,
1457d519adbfSMatthew Knepley                                /* 94*/ 0,
1458865e5f61SKris Buschelman                                        0,
1459865e5f61SKris Buschelman                                        0,
146099cafbc1SBarry Smith                                        0,
146199cafbc1SBarry Smith                                        0,
1462d519adbfSMatthew Knepley                                /* 99*/ 0,
146399cafbc1SBarry Smith                                        0,
146499cafbc1SBarry Smith                                        0,
146599cafbc1SBarry Smith                                        0,
146699cafbc1SBarry Smith                                        0,
1467d519adbfSMatthew Knepley                                /*104*/ 0,
146899cafbc1SBarry Smith                                        MatRealPart_SeqSBAIJ,
1469f5edf698SHong Zhang                                        MatImaginaryPart_SeqSBAIJ,
1470f5edf698SHong Zhang                                        MatGetRowUpperTriangular_SeqSBAIJ,
14712af78befSBarry Smith                                        MatRestoreRowUpperTriangular_SeqSBAIJ,
1472d519adbfSMatthew Knepley                                /*109*/ 0,
14732af78befSBarry Smith                                        0,
14742af78befSBarry Smith                                        0,
14752af78befSBarry Smith                                        0,
1476547795f9SHong Zhang                                        MatMissingDiagonal_SeqSBAIJ,
1477547795f9SHong Zhang                                /*114*/ 0,
1478547795f9SHong Zhang                                        0,
1479547795f9SHong Zhang                                        0,
1480547795f9SHong Zhang                                        0,
1481547795f9SHong Zhang                                        0,
1482547795f9SHong Zhang                                /*119*/ 0,
1483547795f9SHong Zhang                                        0,
14842f480046SShri Abhyankar                                        0,
14853964eb88SJed Brown                                        0,
14863964eb88SJed Brown                                        0,
14873964eb88SJed Brown                                /*124*/ 0,
14883964eb88SJed Brown                                        0,
14893964eb88SJed Brown                                        0,
14903964eb88SJed Brown                                        0,
14913964eb88SJed Brown                                        0,
14923964eb88SJed Brown                                /*129*/ 0,
14933964eb88SJed Brown                                        0,
14943964eb88SJed Brown                                        0,
14953964eb88SJed Brown                                        0,
14963964eb88SJed Brown                                        0,
14973964eb88SJed Brown                                /*134*/ 0,
14983964eb88SJed Brown                                        0,
14993964eb88SJed Brown                                        0,
15003964eb88SJed Brown                                        0,
15013964eb88SJed Brown                                        0,
15023964eb88SJed Brown                                /*139*/ 0,
1503f9426fe0SMark Adams                                        0,
150459f5e6ceSHong Zhang                                        0,
150559f5e6ceSHong Zhang                                        0,
150659f5e6ceSHong Zhang                                        0,
150759f5e6ceSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ
150899cafbc1SBarry Smith };
1509be1d678aSKris Buschelman 
15104a2ae208SSatish Balay #undef __FUNCT__
15114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ"
15127087cfbeSBarry Smith PetscErrorCode  MatStoreValues_SeqSBAIJ(Mat mat)
151349b5e25fSSatish Balay {
15144afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ*)mat->data;
1515d0f46423SBarry Smith   PetscInt       nz   = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
1516dfbe8321SBarry Smith   PetscErrorCode ierr;
151749b5e25fSSatish Balay 
151849b5e25fSSatish Balay   PetscFunctionBegin;
1519e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
152049b5e25fSSatish Balay 
152149b5e25fSSatish Balay   /* allocate space for values if not already there */
152249b5e25fSSatish Balay   if (!aij->saved_values) {
1523854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr);
152449b5e25fSSatish Balay   }
152549b5e25fSSatish Balay 
152649b5e25fSSatish Balay   /* copy values over */
152787828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
152849b5e25fSSatish Balay   PetscFunctionReturn(0);
152949b5e25fSSatish Balay }
153049b5e25fSSatish Balay 
15314a2ae208SSatish Balay #undef __FUNCT__
15324a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ"
15337087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_SeqSBAIJ(Mat mat)
153449b5e25fSSatish Balay {
15354afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ*)mat->data;
15366849ba73SBarry Smith   PetscErrorCode ierr;
1537d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
153849b5e25fSSatish Balay 
153949b5e25fSSatish Balay   PetscFunctionBegin;
1540e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1541e7e72b3dSBarry Smith   if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
154249b5e25fSSatish Balay 
154349b5e25fSSatish Balay   /* copy values over */
154487828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
154549b5e25fSSatish Balay   PetscFunctionReturn(0);
154649b5e25fSSatish Balay }
154749b5e25fSSatish Balay 
15484a2ae208SSatish Balay #undef __FUNCT__
1549a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ"
15507087cfbeSBarry Smith PetscErrorCode  MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
155149b5e25fSSatish Balay {
1552c464158bSHong Zhang   Mat_SeqSBAIJ   *b = (Mat_SeqSBAIJ*)B->data;
15536849ba73SBarry Smith   PetscErrorCode ierr;
15544dcd73b1SHong Zhang   PetscInt       i,mbs,nbs,bs2;
15552576faa2SJed Brown   PetscBool      skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE;
155649b5e25fSSatish Balay 
155749b5e25fSSatish Balay   PetscFunctionBegin;
15582576faa2SJed Brown   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;
1559273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1560db4efbfdSBarry Smith 
156133d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
156226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
156326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1564e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
1565899cda47SBarry Smith 
1566d0f46423SBarry Smith   mbs = B->rmap->N/bs;
15674dcd73b1SHong Zhang   nbs = B->cmap->n/bs;
156849b5e25fSSatish Balay   bs2 = bs*bs;
156949b5e25fSSatish Balay 
15704dcd73b1SHong Zhang   if (mbs*bs != B->rmap->N || nbs*bs!=B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize");
157149b5e25fSSatish Balay 
1572ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
1573ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
1574ab93d7beSBarry Smith     nz             = 0;
1575ab93d7beSBarry Smith   }
1576ab93d7beSBarry Smith 
1577435da068SBarry Smith   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
1578e32f2f54SBarry Smith   if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
157949b5e25fSSatish Balay   if (nnz) {
158049b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
1581e32f2f54SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
1582de64b629SHong Zhang       if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D block rowlength %D",i,nnz[i],nbs);
158349b5e25fSSatish Balay     }
158449b5e25fSSatish Balay   }
158549b5e25fSSatish Balay 
1586db4efbfdSBarry Smith   B->ops->mult             = MatMult_SeqSBAIJ_N;
1587db4efbfdSBarry Smith   B->ops->multadd          = MatMultAdd_SeqSBAIJ_N;
1588db4efbfdSBarry Smith   B->ops->multtranspose    = MatMult_SeqSBAIJ_N;
1589db4efbfdSBarry Smith   B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N;
159026fbe8dcSKarl Rupp 
1591c5929fdfSBarry Smith   ierr  = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr);
159249b5e25fSSatish Balay   if (!flg) {
159349b5e25fSSatish Balay     switch (bs) {
159449b5e25fSSatish Balay     case 1:
159549b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_1;
159649b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_1;
1597431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_1;
1598431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1;
159949b5e25fSSatish Balay       break;
160049b5e25fSSatish Balay     case 2:
160149b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_2;
160249b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_2;
1603431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_2;
1604431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2;
160549b5e25fSSatish Balay       break;
160649b5e25fSSatish Balay     case 3:
160749b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_3;
160849b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_3;
1609431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_3;
1610431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3;
161149b5e25fSSatish Balay       break;
161249b5e25fSSatish Balay     case 4:
161349b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_4;
161449b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_4;
1615431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_4;
1616431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4;
161749b5e25fSSatish Balay       break;
161849b5e25fSSatish Balay     case 5:
161949b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_5;
162049b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_5;
1621431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_5;
1622431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5;
162349b5e25fSSatish Balay       break;
162449b5e25fSSatish Balay     case 6:
162549b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_6;
162649b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_6;
1627431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_6;
1628431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6;
162949b5e25fSSatish Balay       break;
163049b5e25fSSatish Balay     case 7:
1631de53e5efSHong Zhang       B->ops->mult             = MatMult_SeqSBAIJ_7;
163249b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_7;
1633431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_7;
1634431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7;
163549b5e25fSSatish Balay       break;
163649b5e25fSSatish Balay     }
163749b5e25fSSatish Balay   }
163849b5e25fSSatish Balay 
163949b5e25fSSatish Balay   b->mbs = mbs;
16404dcd73b1SHong Zhang   b->nbs = nbs;
1641ab93d7beSBarry Smith   if (!skipallocation) {
16422ee49352SLisandro Dalcin     if (!b->imax) {
1643dcca6d9dSJed Brown       ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr);
164426fbe8dcSKarl Rupp 
1645c760cd28SBarry Smith       b->free_imax_ilen = PETSC_TRUE;
164626fbe8dcSKarl Rupp 
16473bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
16482ee49352SLisandro Dalcin     }
164949b5e25fSSatish Balay     if (!nnz) {
1650435da068SBarry Smith       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
165149b5e25fSSatish Balay       else if (nz <= 0) nz = 1;
165226fbe8dcSKarl Rupp       for (i=0; i<mbs; i++) b->imax[i] = nz;
1653153ea458SHong Zhang       nz = nz*mbs; /* total nz */
165449b5e25fSSatish Balay     } else {
165549b5e25fSSatish Balay       nz = 0;
16568cef66ccSHong Zhang       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
165749b5e25fSSatish Balay     }
16582ee49352SLisandro Dalcin     /* b->ilen will count nonzeros in each block row so far. */
165926fbe8dcSKarl Rupp     for (i=0; i<mbs; i++) b->ilen[i] = 0;
16606c6c5352SBarry Smith     /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */
166149b5e25fSSatish Balay 
166249b5e25fSSatish Balay     /* allocate the matrix space */
16632ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
1664dcca6d9dSJed Brown     ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr);
16653bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
16666c6c5352SBarry Smith     ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
166713f74950SBarry Smith     ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
166826fbe8dcSKarl Rupp 
166949b5e25fSSatish Balay     b->singlemalloc = PETSC_TRUE;
167049b5e25fSSatish Balay 
167149b5e25fSSatish Balay     /* pointer to beginning of each row */
1672e60cf9a0SBarry Smith     b->i[0] = 0;
167326fbe8dcSKarl Rupp     for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1];
167426fbe8dcSKarl Rupp 
1675e6b907acSBarry Smith     b->free_a  = PETSC_TRUE;
1676e6b907acSBarry Smith     b->free_ij = PETSC_TRUE;
1677e811da20SHong Zhang   } else {
1678e6b907acSBarry Smith     b->free_a  = PETSC_FALSE;
1679e6b907acSBarry Smith     b->free_ij = PETSC_FALSE;
1680ab93d7beSBarry Smith   }
168149b5e25fSSatish Balay 
1682d0f46423SBarry Smith   B->rmap->bs = bs;
168349b5e25fSSatish Balay   b->bs2      = bs2;
16846c6c5352SBarry Smith   b->nz       = 0;
1685b32cb4a7SJed Brown   b->maxnz    = nz;
1686153ea458SHong Zhang 
168716cdd363SHong Zhang   b->inew    = 0;
168816cdd363SHong Zhang   b->jnew    = 0;
168916cdd363SHong Zhang   b->anew    = 0;
169016cdd363SHong Zhang   b->a2anew  = 0;
16911a3463dfSHong Zhang   b->permute = PETSC_FALSE;
16922576faa2SJed Brown   if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);}
1693c464158bSHong Zhang   PetscFunctionReturn(0);
1694c464158bSHong Zhang }
1695153ea458SHong Zhang 
169638f409ebSLisandro Dalcin #undef __FUNCT__
169738f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ"
169838f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[])
169938f409ebSLisandro Dalcin {
170038f409ebSLisandro Dalcin   PetscInt       i,j,m,nz,nz_max=0,*nnz;
170138f409ebSLisandro Dalcin   PetscScalar    *values=0;
170238f409ebSLisandro Dalcin   PetscBool      roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented;
170338f409ebSLisandro Dalcin   PetscErrorCode ierr;
170438f409ebSLisandro Dalcin   PetscFunctionBegin;
170538f409ebSLisandro Dalcin   if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
170638f409ebSLisandro Dalcin   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
170738f409ebSLisandro Dalcin   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
170838f409ebSLisandro Dalcin   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
170938f409ebSLisandro Dalcin   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
171038f409ebSLisandro Dalcin   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
171138f409ebSLisandro Dalcin   m      = B->rmap->n/bs;
171238f409ebSLisandro Dalcin 
171338f409ebSLisandro Dalcin   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1714854ce69bSBarry Smith   ierr = PetscMalloc1(m+1,&nnz);CHKERRQ(ierr);
171538f409ebSLisandro Dalcin   for (i=0; i<m; i++) {
171638f409ebSLisandro Dalcin     nz = ii[i+1] - ii[i];
171738f409ebSLisandro Dalcin     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D has a negative number of columns %D",i,nz);
171838f409ebSLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
171938f409ebSLisandro Dalcin     nnz[i] = nz;
172038f409ebSLisandro Dalcin   }
172138f409ebSLisandro Dalcin   ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
172238f409ebSLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
172338f409ebSLisandro Dalcin 
172438f409ebSLisandro Dalcin   values = (PetscScalar*)V;
172538f409ebSLisandro Dalcin   if (!values) {
17261795a4d1SJed Brown     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
172738f409ebSLisandro Dalcin   }
172838f409ebSLisandro Dalcin   for (i=0; i<m; i++) {
172938f409ebSLisandro Dalcin     PetscInt          ncols  = ii[i+1] - ii[i];
173038f409ebSLisandro Dalcin     const PetscInt    *icols = jj + ii[i];
173138f409ebSLisandro Dalcin     if (!roworiented || bs == 1) {
173238f409ebSLisandro Dalcin       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
173338f409ebSLisandro Dalcin       ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
173438f409ebSLisandro Dalcin     } else {
173538f409ebSLisandro Dalcin       for (j=0; j<ncols; j++) {
173638f409ebSLisandro Dalcin         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
173738f409ebSLisandro Dalcin         ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
173838f409ebSLisandro Dalcin       }
173938f409ebSLisandro Dalcin     }
174038f409ebSLisandro Dalcin   }
174138f409ebSLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
174238f409ebSLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
174338f409ebSLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
174438f409ebSLisandro Dalcin   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
174538f409ebSLisandro Dalcin   PetscFunctionReturn(0);
174638f409ebSLisandro Dalcin }
174738f409ebSLisandro Dalcin 
1748db4efbfdSBarry Smith /*
1749db4efbfdSBarry Smith    This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization
1750db4efbfdSBarry Smith */
17518b1456e3SHong Zhang #undef __FUNCT__
1752d595f711SHong Zhang #define __FUNCT__ "MatSeqSBAIJSetNumericFactorization_inplace"
1753ace3abfcSBarry Smith PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural)
1754db4efbfdSBarry Smith {
1755db4efbfdSBarry Smith   PetscErrorCode ierr;
1756ace3abfcSBarry Smith   PetscBool      flg = PETSC_FALSE;
1757db4efbfdSBarry Smith   PetscInt       bs  = B->rmap->bs;
1758db4efbfdSBarry Smith 
1759db4efbfdSBarry Smith   PetscFunctionBegin;
1760c5929fdfSBarry Smith   ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr);
1761db4efbfdSBarry Smith   if (flg) bs = 8;
1762db4efbfdSBarry Smith 
1763db4efbfdSBarry Smith   if (!natural) {
1764db4efbfdSBarry Smith     switch (bs) {
1765db4efbfdSBarry Smith     case 1:
1766d595f711SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace;
1767db4efbfdSBarry Smith       break;
1768db4efbfdSBarry Smith     case 2:
1769db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
1770db4efbfdSBarry Smith       break;
1771db4efbfdSBarry Smith     case 3:
1772db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
1773db4efbfdSBarry Smith       break;
1774db4efbfdSBarry Smith     case 4:
1775db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
1776db4efbfdSBarry Smith       break;
1777db4efbfdSBarry Smith     case 5:
1778db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
1779db4efbfdSBarry Smith       break;
1780db4efbfdSBarry Smith     case 6:
1781db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
1782db4efbfdSBarry Smith       break;
1783db4efbfdSBarry Smith     case 7:
1784db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
1785db4efbfdSBarry Smith       break;
1786db4efbfdSBarry Smith     default:
1787db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N;
1788db4efbfdSBarry Smith       break;
1789db4efbfdSBarry Smith     }
1790db4efbfdSBarry Smith   } else {
1791db4efbfdSBarry Smith     switch (bs) {
1792db4efbfdSBarry Smith     case 1:
1793d595f711SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace;
1794db4efbfdSBarry Smith       break;
1795db4efbfdSBarry Smith     case 2:
1796db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
1797db4efbfdSBarry Smith       break;
1798db4efbfdSBarry Smith     case 3:
1799db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
1800db4efbfdSBarry Smith       break;
1801db4efbfdSBarry Smith     case 4:
1802db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
1803db4efbfdSBarry Smith       break;
1804db4efbfdSBarry Smith     case 5:
1805db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
1806db4efbfdSBarry Smith       break;
1807db4efbfdSBarry Smith     case 6:
1808db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
1809db4efbfdSBarry Smith       break;
1810db4efbfdSBarry Smith     case 7:
1811db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
1812db4efbfdSBarry Smith       break;
1813db4efbfdSBarry Smith     default:
1814db4efbfdSBarry Smith       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering;
1815db4efbfdSBarry Smith       break;
1816db4efbfdSBarry Smith     }
1817db4efbfdSBarry Smith   }
1818db4efbfdSBarry Smith   PetscFunctionReturn(0);
1819db4efbfdSBarry Smith }
1820db4efbfdSBarry Smith 
1821cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
1822cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType,MatReuse,Mat*);
1823d769727bSBarry Smith 
18245c9eb25fSBarry Smith #undef __FUNCT__
18255c9eb25fSBarry Smith #define __FUNCT__ "MatGetFactor_seqsbaij_petsc"
1826cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B)
18275c9eb25fSBarry Smith {
1828d0f46423SBarry Smith   PetscInt       n = A->rmap->n;
18295c9eb25fSBarry Smith   PetscErrorCode ierr;
18305c9eb25fSBarry Smith 
18315c9eb25fSBarry Smith   PetscFunctionBegin;
18320e92d65fSHong Zhang #if defined(PETSC_USE_COMPLEX)
18330e92d65fSHong Zhang   if (A->hermitian) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian Factor is not supported");
18340e92d65fSHong Zhang #endif
1835ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
18365c9eb25fSBarry Smith   ierr = MatSetSizes(*B,n,n,n,n);CHKERRQ(ierr);
18375c9eb25fSBarry Smith   if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) {
18385c9eb25fSBarry Smith     ierr = MatSetType(*B,MATSEQSBAIJ);CHKERRQ(ierr);
18390298fd71SBarry Smith     ierr = MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL);CHKERRQ(ierr);
184026fbe8dcSKarl Rupp 
18417b056e98SHong Zhang     (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ;
1842c6d0d4f0SHong Zhang     (*B)->ops->iccfactorsymbolic      = MatICCFactorSymbolic_SeqSBAIJ;
1843e32f2f54SBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported");
1844*00c67f3bSHong Zhang 
1845d5f3da31SBarry Smith   (*B)->factortype = ftype;
1846*00c67f3bSHong Zhang   ierr = PetscFree((*B)->solvertype);CHKERRQ(ierr);
1847*00c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*B)->solvertype);CHKERRQ(ierr);
18485c9eb25fSBarry Smith   PetscFunctionReturn(0);
18495c9eb25fSBarry Smith }
18505c9eb25fSBarry Smith 
18510bad9183SKris Buschelman /*MC
1852fafad747SKris Buschelman   MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
18530bad9183SKris Buschelman   based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
18540bad9183SKris Buschelman 
1855828413b8SBarry Smith   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
185671dad5bbSBarry Smith   can call MatSetOption(Mat, MAT_HERMITIAN); after MatAssemblyEnd()
1857828413b8SBarry Smith 
18580bad9183SKris Buschelman   Options Database Keys:
18590bad9183SKris Buschelman   . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions()
18600bad9183SKris Buschelman 
186171dad5bbSBarry Smith   Notes: By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not
186271dad5bbSBarry Smith      stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use
186371dad5bbSBarry Smith      the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion.
186471dad5bbSBarry Smith 
186571dad5bbSBarry Smith 
18660bad9183SKris Buschelman   Level: beginner
18670bad9183SKris Buschelman 
18680bad9183SKris Buschelman   .seealso: MatCreateSeqSBAIJ
18690bad9183SKris Buschelman M*/
18700bad9183SKris Buschelman 
1871cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqSBSTRM(Mat, MatType,MatReuse,Mat*);
1872aa5a9175SDahai Guo 
1873a23d5eceSKris Buschelman #undef __FUNCT__
1874a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ"
18758cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B)
1876a23d5eceSKris Buschelman {
1877a23d5eceSKris Buschelman   Mat_SeqSBAIJ   *b;
1878dfbe8321SBarry Smith   PetscErrorCode ierr;
187913f74950SBarry Smith   PetscMPIInt    size;
1880ace3abfcSBarry Smith   PetscBool      no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE;
1881a23d5eceSKris Buschelman 
1882a23d5eceSKris Buschelman   PetscFunctionBegin;
1883ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1884e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
1885a23d5eceSKris Buschelman 
1886b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
1887a23d5eceSKris Buschelman   B->data = (void*)b;
1888a23d5eceSKris Buschelman   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
188926fbe8dcSKarl Rupp 
1890a23d5eceSKris Buschelman   B->ops->destroy    = MatDestroy_SeqSBAIJ;
1891a23d5eceSKris Buschelman   B->ops->view       = MatView_SeqSBAIJ;
1892a23d5eceSKris Buschelman   b->row             = 0;
1893a23d5eceSKris Buschelman   b->icol            = 0;
1894a23d5eceSKris Buschelman   b->reallocs        = 0;
1895a23d5eceSKris Buschelman   b->saved_values    = 0;
18960def2e27SBarry Smith   b->inode.limit     = 5;
18970def2e27SBarry Smith   b->inode.max_limit = 5;
1898a23d5eceSKris Buschelman 
1899a23d5eceSKris Buschelman   b->roworiented        = PETSC_TRUE;
1900a23d5eceSKris Buschelman   b->nonew              = 0;
1901a23d5eceSKris Buschelman   b->diag               = 0;
1902a23d5eceSKris Buschelman   b->solve_work         = 0;
1903a23d5eceSKris Buschelman   b->mult_work          = 0;
1904a23d5eceSKris Buschelman   B->spptr              = 0;
1905f2cbd3d5SJed Brown   B->info.nz_unneeded   = (PetscReal)b->maxnz*b->bs2;
1906a9817697SBarry Smith   b->keepnonzeropattern = PETSC_FALSE;
1907a23d5eceSKris Buschelman 
1908a23d5eceSKris Buschelman   b->inew    = 0;
1909a23d5eceSKris Buschelman   b->jnew    = 0;
1910a23d5eceSKris Buschelman   b->anew    = 0;
1911a23d5eceSKris Buschelman   b->a2anew  = 0;
1912a23d5eceSKris Buschelman   b->permute = PETSC_FALSE;
1913a23d5eceSKris Buschelman 
191471dad5bbSBarry Smith   b->ignore_ltriangular = PETSC_TRUE;
191526fbe8dcSKarl Rupp 
1916c5929fdfSBarry Smith   ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL);CHKERRQ(ierr);
1917941593c8SHong Zhang 
1918f5edf698SHong Zhang   b->getrow_utriangular = PETSC_FALSE;
191926fbe8dcSKarl Rupp 
1920c5929fdfSBarry Smith   ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL);CHKERRQ(ierr);
1921f5edf698SHong Zhang 
1922bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ);CHKERRQ(ierr);
1923bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr);
1924bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr);
1925bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr);
1926bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr);
1927bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr);
192838f409ebSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ);CHKERRQ(ierr);
1929bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqsbstrm_C",MatConvert_SeqSBAIJ_SeqSBSTRM);CHKERRQ(ierr);
19306214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
19316214f412SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_elemental_C",MatConvert_SeqSBAIJ_Elemental);CHKERRQ(ierr);
19326214f412SHong Zhang #endif
193323ce1328SBarry Smith 
193423ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
193523ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
193623ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
193723ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
193826fbe8dcSKarl Rupp 
193917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ);CHKERRQ(ierr);
19400def2e27SBarry Smith 
1941ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat");CHKERRQ(ierr);
19420298fd71SBarry Smith   ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL);CHKERRQ(ierr);
194326fbe8dcSKarl Rupp   if (no_unroll) {
194426fbe8dcSKarl Rupp     ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n");CHKERRQ(ierr);
194526fbe8dcSKarl Rupp   }
19460298fd71SBarry Smith   ierr = PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL);CHKERRQ(ierr);
194726fbe8dcSKarl Rupp   if (no_inode) {
194826fbe8dcSKarl Rupp     ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n");CHKERRQ(ierr);
194926fbe8dcSKarl Rupp   }
19500298fd71SBarry Smith   ierr = PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL);CHKERRQ(ierr);
19510def2e27SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
1952ace3abfcSBarry Smith   b->inode.use = (PetscBool)(!(no_unroll || no_inode));
19530def2e27SBarry Smith   if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit;
1954a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1955a23d5eceSKris Buschelman }
1956a23d5eceSKris Buschelman 
1957a23d5eceSKris Buschelman #undef __FUNCT__
1958a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation"
1959a23d5eceSKris Buschelman /*@C
1960a23d5eceSKris Buschelman    MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
1961a23d5eceSKris Buschelman    compressed row) format.  For good matrix assembly performance the
1962a23d5eceSKris Buschelman    user should preallocate the matrix storage by setting the parameter nz
1963a23d5eceSKris Buschelman    (or the array nnz).  By setting these parameters accurately, performance
1964a23d5eceSKris Buschelman    during matrix assembly can be increased by more than a factor of 50.
1965a23d5eceSKris Buschelman 
1966a23d5eceSKris Buschelman    Collective on Mat
1967a23d5eceSKris Buschelman 
1968a23d5eceSKris Buschelman    Input Parameters:
19691c4f3114SJed Brown +  B - the symmetric matrix
1970bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
1971bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
1972a23d5eceSKris Buschelman .  nz - number of block nonzeros per block row (same for all rows)
1973a23d5eceSKris Buschelman -  nnz - array containing the number of block nonzeros in the upper triangular plus
19740298fd71SBarry Smith          diagonal portion of each block (possibly different for each block row) or NULL
1975a23d5eceSKris Buschelman 
1976a23d5eceSKris Buschelman    Options Database Keys:
1977a23d5eceSKris Buschelman .   -mat_no_unroll - uses code that does not unroll the loops in the
1978a23d5eceSKris Buschelman                      block calculations (much slower)
1979db4efbfdSBarry Smith .   -mat_block_size - size of the blocks to use (only works if a negative bs is passed in
1980a23d5eceSKris Buschelman 
1981a23d5eceSKris Buschelman    Level: intermediate
1982a23d5eceSKris Buschelman 
1983a23d5eceSKris Buschelman    Notes:
1984a23d5eceSKris Buschelman    Specify the preallocated storage with either nz or nnz (not both).
19850298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
1986a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
1987a23d5eceSKris Buschelman 
1988aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
1989aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1990aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
1991aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
1992aa95bbe8SBarry Smith 
199349a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
199449a6f317SBarry Smith 
199549a6f317SBarry Smith 
199669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ()
1997a23d5eceSKris Buschelman @*/
19987087cfbeSBarry Smith PetscErrorCode  MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
199913f74950SBarry Smith {
20004ac538c5SBarry Smith   PetscErrorCode ierr;
2001a23d5eceSKris Buschelman 
2002a23d5eceSKris Buschelman   PetscFunctionBegin;
20036ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
20046ba663aaSJed Brown   PetscValidType(B,1);
20056ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
20064ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr);
2007a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2008a23d5eceSKris Buschelman }
200949b5e25fSSatish Balay 
20104a2ae208SSatish Balay #undef  __FUNCT__
201138f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR"
201238f409ebSLisandro Dalcin /*@C
201338f409ebSLisandro Dalcin    MatSeqSBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in symmetric block AIJ format.
201438f409ebSLisandro Dalcin 
201538f409ebSLisandro Dalcin    Input Parameters:
20161c4f3114SJed Brown +  B - the matrix
2017eab78319SHong Zhang .  bs - size of block, the blocks are ALWAYS square.
201838f409ebSLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
201938f409ebSLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
202038f409ebSLisandro Dalcin -  v - optional values in the matrix
202138f409ebSLisandro Dalcin 
202238f409ebSLisandro Dalcin    Level: developer
202338f409ebSLisandro Dalcin 
202438f409ebSLisandro Dalcin    Notes:
202538f409ebSLisandro Dalcin    The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
202638f409ebSLisandro Dalcin    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
202738f409ebSLisandro Dalcin    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
202838f409ebSLisandro Dalcin    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
202938f409ebSLisandro Dalcin    block column and the second index is over columns within a block.
203038f409ebSLisandro Dalcin 
203138f409ebSLisandro Dalcin .keywords: matrix, block, aij, compressed row, sparse
203238f409ebSLisandro Dalcin 
203338f409ebSLisandro Dalcin .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValuesBlocked(), MatSeqSBAIJSetPreallocation(), MATSEQSBAIJ
203438f409ebSLisandro Dalcin @*/
203538f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
203638f409ebSLisandro Dalcin {
203738f409ebSLisandro Dalcin   PetscErrorCode ierr;
203838f409ebSLisandro Dalcin 
203938f409ebSLisandro Dalcin   PetscFunctionBegin;
204038f409ebSLisandro Dalcin   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
204138f409ebSLisandro Dalcin   PetscValidType(B,1);
204238f409ebSLisandro Dalcin   PetscValidLogicalCollectiveInt(B,bs,2);
204338f409ebSLisandro Dalcin   ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
204438f409ebSLisandro Dalcin   PetscFunctionReturn(0);
204538f409ebSLisandro Dalcin }
204638f409ebSLisandro Dalcin 
204738f409ebSLisandro Dalcin #undef __FUNCT__
20484a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ"
2049c464158bSHong Zhang /*@C
2050c464158bSHong Zhang    MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block
2051c464158bSHong Zhang    compressed row) format.  For good matrix assembly performance the
2052c464158bSHong Zhang    user should preallocate the matrix storage by setting the parameter nz
2053c464158bSHong Zhang    (or the array nnz).  By setting these parameters accurately, performance
2054c464158bSHong Zhang    during matrix assembly can be increased by more than a factor of 50.
205549b5e25fSSatish Balay 
2056c464158bSHong Zhang    Collective on MPI_Comm
2057c464158bSHong Zhang 
2058c464158bSHong Zhang    Input Parameters:
2059c464158bSHong Zhang +  comm - MPI communicator, set to PETSC_COMM_SELF
2060bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2061bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2062c464158bSHong Zhang .  m - number of rows, or number of columns
2063c464158bSHong Zhang .  nz - number of block nonzeros per block row (same for all rows)
2064744e8345SSatish Balay -  nnz - array containing the number of block nonzeros in the upper triangular plus
20650298fd71SBarry Smith          diagonal portion of each block (possibly different for each block row) or NULL
2066c464158bSHong Zhang 
2067c464158bSHong Zhang    Output Parameter:
2068c464158bSHong Zhang .  A - the symmetric matrix
2069c464158bSHong Zhang 
2070c464158bSHong Zhang    Options Database Keys:
2071c464158bSHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
2072c464158bSHong Zhang                      block calculations (much slower)
2073c464158bSHong Zhang .    -mat_block_size - size of the blocks to use
2074c464158bSHong Zhang 
2075c464158bSHong Zhang    Level: intermediate
2076c464158bSHong Zhang 
2077175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2078ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
2079175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2080175b88e8SBarry Smith 
2081c464158bSHong Zhang    Notes:
20826d6d819aSHong Zhang    The number of rows and columns must be divisible by blocksize.
20836d6d819aSHong Zhang    This matrix type does not support complex Hermitian operation.
2084c464158bSHong Zhang 
2085c464158bSHong Zhang    Specify the preallocated storage with either nz or nnz (not both).
20860298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
2087a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
2088c464158bSHong Zhang 
208949a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
209049a6f317SBarry Smith 
209169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ()
2092c464158bSHong Zhang @*/
20937087cfbeSBarry Smith PetscErrorCode  MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
2094c464158bSHong Zhang {
2095dfbe8321SBarry Smith   PetscErrorCode ierr;
2096c464158bSHong Zhang 
2097c464158bSHong Zhang   PetscFunctionBegin;
2098f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2099f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2100c464158bSHong Zhang   ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
2101ab93d7beSBarry Smith   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
210249b5e25fSSatish Balay   PetscFunctionReturn(0);
210349b5e25fSSatish Balay }
210449b5e25fSSatish Balay 
21054a2ae208SSatish Balay #undef __FUNCT__
21064a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ"
2107dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
210849b5e25fSSatish Balay {
210949b5e25fSSatish Balay   Mat            C;
211049b5e25fSSatish Balay   Mat_SeqSBAIJ   *c,*a = (Mat_SeqSBAIJ*)A->data;
21116849ba73SBarry Smith   PetscErrorCode ierr;
2112b40805acSSatish Balay   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
211349b5e25fSSatish Balay 
211449b5e25fSSatish Balay   PetscFunctionBegin;
2115e32f2f54SBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix");
211649b5e25fSSatish Balay 
211749b5e25fSSatish Balay   *B   = 0;
2118ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr);
2119d0f46423SBarry Smith   ierr = MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
21208e9a0fb8SHong Zhang   ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr);
21211d5dac46SHong Zhang   ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
2122692f9cbeSHong Zhang   c    = (Mat_SeqSBAIJ*)C->data;
2123692f9cbeSHong Zhang 
2124273d9f13SBarry Smith   C->preallocated       = PETSC_TRUE;
2125d5f3da31SBarry Smith   C->factortype         = A->factortype;
212649b5e25fSSatish Balay   c->row                = 0;
212749b5e25fSSatish Balay   c->icol               = 0;
212849b5e25fSSatish Balay   c->saved_values       = 0;
2129a9817697SBarry Smith   c->keepnonzeropattern = a->keepnonzeropattern;
213049b5e25fSSatish Balay   C->assembled          = PETSC_TRUE;
213149b5e25fSSatish Balay 
21321e1e43feSBarry Smith   ierr   = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
21331e1e43feSBarry Smith   ierr   = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
213449b5e25fSSatish Balay   c->bs2 = a->bs2;
213549b5e25fSSatish Balay   c->mbs = a->mbs;
213649b5e25fSSatish Balay   c->nbs = a->nbs;
213749b5e25fSSatish Balay 
2138c760cd28SBarry Smith   if  (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
2139c760cd28SBarry Smith     c->imax           = a->imax;
2140c760cd28SBarry Smith     c->ilen           = a->ilen;
2141c760cd28SBarry Smith     c->free_imax_ilen = PETSC_FALSE;
2142c760cd28SBarry Smith   } else {
2143dcca6d9dSJed Brown     ierr = PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen);CHKERRQ(ierr);
21443bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
214549b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
214649b5e25fSSatish Balay       c->imax[i] = a->imax[i];
214749b5e25fSSatish Balay       c->ilen[i] = a->ilen[i];
214849b5e25fSSatish Balay     }
2149c760cd28SBarry Smith     c->free_imax_ilen = PETSC_TRUE;
2150c760cd28SBarry Smith   }
215149b5e25fSSatish Balay 
215249b5e25fSSatish Balay   /* allocate the matrix space */
21534da8f245SBarry Smith   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
2154785e854fSJed Brown     ierr            = PetscMalloc1(bs2*nz,&c->a);CHKERRQ(ierr);
21553bb1ff40SBarry Smith     ierr            = PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
215644e1c64aSLisandro Dalcin     c->i            = a->i;
215744e1c64aSLisandro Dalcin     c->j            = a->j;
21584da8f245SBarry Smith     c->singlemalloc = PETSC_FALSE;
215944e1c64aSLisandro Dalcin     c->free_a       = PETSC_TRUE;
21604da8f245SBarry Smith     c->free_ij      = PETSC_FALSE;
21614da8f245SBarry Smith     c->parent       = A;
21624da8f245SBarry Smith     ierr            = PetscObjectReference((PetscObject)A);CHKERRQ(ierr);
21634da8f245SBarry Smith     ierr            = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
21644da8f245SBarry Smith     ierr            = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
21654da8f245SBarry Smith   } else {
2166dcca6d9dSJed Brown     ierr            = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr);
216713f74950SBarry Smith     ierr            = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
21683bb1ff40SBarry Smith     ierr            = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));CHKERRQ(ierr);
21694da8f245SBarry Smith     c->singlemalloc = PETSC_TRUE;
217044e1c64aSLisandro Dalcin     c->free_a       = PETSC_TRUE;
21714da8f245SBarry Smith     c->free_ij      = PETSC_TRUE;
21724da8f245SBarry Smith   }
217349b5e25fSSatish Balay   if (mbs > 0) {
21744da8f245SBarry Smith     if (cpvalues != MAT_SHARE_NONZERO_PATTERN) {
217513f74950SBarry Smith       ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
21764da8f245SBarry Smith     }
217749b5e25fSSatish Balay     if (cpvalues == MAT_COPY_VALUES) {
217849b5e25fSSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
217949b5e25fSSatish Balay     } else {
218049b5e25fSSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
218149b5e25fSSatish Balay     }
2182a1c3900fSBarry Smith     if (a->jshort) {
218344e1c64aSLisandro Dalcin       /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */
218444e1c64aSLisandro Dalcin       /* if the parent matrix is reassembled, this child matrix will never notice */
2185785e854fSJed Brown       ierr = PetscMalloc1(nz,&c->jshort);CHKERRQ(ierr);
21863bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short));CHKERRQ(ierr);
2187a1c3900fSBarry Smith       ierr = PetscMemcpy(c->jshort,a->jshort,nz*sizeof(unsigned short));CHKERRQ(ierr);
218826fbe8dcSKarl Rupp 
21894da8f245SBarry Smith       c->free_jshort = PETSC_TRUE;
21904da8f245SBarry Smith     }
2191a1c3900fSBarry Smith   }
219249b5e25fSSatish Balay 
219349b5e25fSSatish Balay   c->roworiented = a->roworiented;
219449b5e25fSSatish Balay   c->nonew       = a->nonew;
219549b5e25fSSatish Balay 
219649b5e25fSSatish Balay   if (a->diag) {
2197c760cd28SBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
2198c760cd28SBarry Smith       c->diag      = a->diag;
2199c760cd28SBarry Smith       c->free_diag = PETSC_FALSE;
2200c760cd28SBarry Smith     } else {
2201785e854fSJed Brown       ierr = PetscMalloc1(mbs,&c->diag);CHKERRQ(ierr);
22023bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt));CHKERRQ(ierr);
220326fbe8dcSKarl Rupp       for (i=0; i<mbs; i++) c->diag[i] = a->diag[i];
2204c760cd28SBarry Smith       c->free_diag = PETSC_TRUE;
2205c760cd28SBarry Smith     }
220644e1c64aSLisandro Dalcin   }
22076c6c5352SBarry Smith   c->nz         = a->nz;
2208f2cbd3d5SJed Brown   c->maxnz      = a->nz; /* Since we allocate exactly the right amount */
220949b5e25fSSatish Balay   c->solve_work = 0;
221049b5e25fSSatish Balay   c->mult_work  = 0;
221126fbe8dcSKarl Rupp 
221249b5e25fSSatish Balay   *B   = C;
2213140e18c1SBarry Smith   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
221449b5e25fSSatish Balay   PetscFunctionReturn(0);
221549b5e25fSSatish Balay }
221649b5e25fSSatish Balay 
22174a2ae208SSatish Balay #undef __FUNCT__
22185bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqSBAIJ"
2219112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqSBAIJ(Mat newmat,PetscViewer viewer)
22202f480046SShri Abhyankar {
22212f480046SShri Abhyankar   Mat_SeqSBAIJ   *a;
22222f480046SShri Abhyankar   PetscErrorCode ierr;
22232f480046SShri Abhyankar   int            fd;
22242f480046SShri Abhyankar   PetscMPIInt    size;
22253059b6faSBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs;
22262f480046SShri Abhyankar   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount;
22272f480046SShri Abhyankar   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols;
22282f480046SShri Abhyankar   PetscInt       *masked,nmask,tmp,bs2,ishift;
22292f480046SShri Abhyankar   PetscScalar    *aa;
2230ce94432eSBarry Smith   MPI_Comm       comm;
22312f480046SShri Abhyankar 
22322f480046SShri Abhyankar   PetscFunctionBegin;
2233c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
2234c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2235ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
2236c5929fdfSBarry Smith   ierr = PetscOptionsGetInt(((PetscObject)newmat)->options,((PetscObject)newmat)->prefix,"-matload_block_size",&bs,NULL);CHKERRQ(ierr);
22373059b6faSBarry Smith   if (bs < 0) bs = 1;
22382f480046SShri Abhyankar   bs2  = bs*bs;
22392f480046SShri Abhyankar 
22402f480046SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
22412f480046SShri Abhyankar   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor");
22422f480046SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
22432f480046SShri Abhyankar   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
22442f480046SShri Abhyankar   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
22452f480046SShri Abhyankar   M = header[1]; N = header[2]; nz = header[3];
22462f480046SShri Abhyankar 
22472f480046SShri Abhyankar   if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ");
22482f480046SShri Abhyankar 
22492f480046SShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
22502f480046SShri Abhyankar 
22512f480046SShri Abhyankar   /*
22522f480046SShri Abhyankar      This code adds extra rows to make sure the number of rows is
22532f480046SShri Abhyankar     divisible by the blocksize
22542f480046SShri Abhyankar   */
22552f480046SShri Abhyankar   mbs        = M/bs;
22562f480046SShri Abhyankar   extra_rows = bs - M + bs*(mbs);
22572f480046SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
22582f480046SShri Abhyankar   else                  mbs++;
22592f480046SShri Abhyankar   if (extra_rows) {
22602f480046SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
22612f480046SShri Abhyankar   }
22622f480046SShri Abhyankar 
22632f480046SShri Abhyankar   /* Set global sizes if not already set */
22642f480046SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) {
22652f480046SShri Abhyankar     ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
22662f480046SShri Abhyankar   } else { /* Check if the matrix global sizes are correct */
22672f480046SShri Abhyankar     ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr);
22682f480046SShri Abhyankar     if (M != rows ||  N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
22692f480046SShri Abhyankar   }
22702f480046SShri Abhyankar 
22712f480046SShri Abhyankar   /* read in row lengths */
2272854ce69bSBarry Smith   ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
22732f480046SShri Abhyankar   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
22742f480046SShri Abhyankar   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
22752f480046SShri Abhyankar 
22762f480046SShri Abhyankar   /* read in column indices */
2277854ce69bSBarry Smith   ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr);
22782f480046SShri Abhyankar   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
22792f480046SShri Abhyankar   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
22802f480046SShri Abhyankar 
22812f480046SShri Abhyankar   /* loop over row lengths determining block row lengths */
22821795a4d1SJed Brown   ierr     = PetscCalloc1(mbs,&s_browlengths);CHKERRQ(ierr);
2283dcca6d9dSJed Brown   ierr     = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr);
22842f480046SShri Abhyankar   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
22852f480046SShri Abhyankar   rowcount = 0;
22862f480046SShri Abhyankar   nzcount  = 0;
22872f480046SShri Abhyankar   for (i=0; i<mbs; i++) {
22882f480046SShri Abhyankar     nmask = 0;
22892f480046SShri Abhyankar     for (j=0; j<bs; j++) {
22902f480046SShri Abhyankar       kmax = rowlengths[rowcount];
22912f480046SShri Abhyankar       for (k=0; k<kmax; k++) {
22922f480046SShri Abhyankar         tmp = jj[nzcount++]/bs;   /* block col. index */
22932f480046SShri Abhyankar         if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;}
22942f480046SShri Abhyankar       }
22952f480046SShri Abhyankar       rowcount++;
22962f480046SShri Abhyankar     }
22972f480046SShri Abhyankar     s_browlengths[i] += nmask;
22982f480046SShri Abhyankar 
22992f480046SShri Abhyankar     /* zero out the mask elements we set */
23002f480046SShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
23012f480046SShri Abhyankar   }
23022f480046SShri Abhyankar 
23032f480046SShri Abhyankar   /* Do preallocation */
23042f480046SShri Abhyankar   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(newmat,bs,0,s_browlengths);CHKERRQ(ierr);
23052f480046SShri Abhyankar   a    = (Mat_SeqSBAIJ*)newmat->data;
23062f480046SShri Abhyankar 
23072f480046SShri Abhyankar   /* set matrix "i" values */
23082f480046SShri Abhyankar   a->i[0] = 0;
23092f480046SShri Abhyankar   for (i=1; i<= mbs; i++) {
23102f480046SShri Abhyankar     a->i[i]      = a->i[i-1] + s_browlengths[i-1];
23112f480046SShri Abhyankar     a->ilen[i-1] = s_browlengths[i-1];
23122f480046SShri Abhyankar   }
23132f480046SShri Abhyankar   a->nz = a->i[mbs];
23142f480046SShri Abhyankar 
23152f480046SShri Abhyankar   /* read in nonzero values */
2316854ce69bSBarry Smith   ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr);
23172f480046SShri Abhyankar   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
23182f480046SShri Abhyankar   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
23192f480046SShri Abhyankar 
23202f480046SShri Abhyankar   /* set "a" and "j" values into matrix */
23212f480046SShri Abhyankar   nzcount = 0; jcount = 0;
23222f480046SShri Abhyankar   for (i=0; i<mbs; i++) {
23232f480046SShri Abhyankar     nzcountb = nzcount;
23242f480046SShri Abhyankar     nmask    = 0;
23252f480046SShri Abhyankar     for (j=0; j<bs; j++) {
23262f480046SShri Abhyankar       kmax = rowlengths[i*bs+j];
23272f480046SShri Abhyankar       for (k=0; k<kmax; k++) {
23282f480046SShri Abhyankar         tmp = jj[nzcount++]/bs; /* block col. index */
23292f480046SShri Abhyankar         if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;}
23302f480046SShri Abhyankar       }
23312f480046SShri Abhyankar     }
23322f480046SShri Abhyankar     /* sort the masked values */
23332f480046SShri Abhyankar     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
23342f480046SShri Abhyankar 
23352f480046SShri Abhyankar     /* set "j" values into matrix */
23362f480046SShri Abhyankar     maskcount = 1;
23372f480046SShri Abhyankar     for (j=0; j<nmask; j++) {
23382f480046SShri Abhyankar       a->j[jcount++]  = masked[j];
23392f480046SShri Abhyankar       mask[masked[j]] = maskcount++;
23402f480046SShri Abhyankar     }
23412f480046SShri Abhyankar 
23422f480046SShri Abhyankar     /* set "a" values into matrix */
23432f480046SShri Abhyankar     ishift = bs2*a->i[i];
23442f480046SShri Abhyankar     for (j=0; j<bs; j++) {
23452f480046SShri Abhyankar       kmax = rowlengths[i*bs+j];
23462f480046SShri Abhyankar       for (k=0; k<kmax; k++) {
23472f480046SShri Abhyankar         tmp = jj[nzcountb]/bs;        /* block col. index */
23482f480046SShri Abhyankar         if (tmp >= i) {
23492f480046SShri Abhyankar           block     = mask[tmp] - 1;
23502f480046SShri Abhyankar           point     = jj[nzcountb] - bs*tmp;
23512f480046SShri Abhyankar           idx       = ishift + bs2*block + j + bs*point;
23522f480046SShri Abhyankar           a->a[idx] = aa[nzcountb];
23532f480046SShri Abhyankar         }
23542f480046SShri Abhyankar         nzcountb++;
23552f480046SShri Abhyankar       }
23562f480046SShri Abhyankar     }
23572f480046SShri Abhyankar     /* zero out the mask elements we set */
23582f480046SShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
23592f480046SShri Abhyankar   }
23602f480046SShri Abhyankar   if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
23612f480046SShri Abhyankar 
23622f480046SShri Abhyankar   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
23632f480046SShri Abhyankar   ierr = PetscFree(s_browlengths);CHKERRQ(ierr);
23642f480046SShri Abhyankar   ierr = PetscFree(aa);CHKERRQ(ierr);
23652f480046SShri Abhyankar   ierr = PetscFree(jj);CHKERRQ(ierr);
23662f480046SShri Abhyankar   ierr = PetscFree2(mask,masked);CHKERRQ(ierr);
23672f480046SShri Abhyankar 
23682f480046SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
23692f480046SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
23702f480046SShri Abhyankar   PetscFunctionReturn(0);
23712f480046SShri Abhyankar }
23722f480046SShri Abhyankar 
23732f480046SShri Abhyankar #undef __FUNCT__
2374c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqSBAIJWithArrays"
2375c75a6043SHong Zhang /*@
2376c75a6043SHong Zhang      MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements
2377c75a6043SHong Zhang               (upper triangular entries in CSR format) provided by the user.
2378c75a6043SHong Zhang 
2379c75a6043SHong Zhang      Collective on MPI_Comm
2380c75a6043SHong Zhang 
2381c75a6043SHong Zhang    Input Parameters:
2382c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
2383c75a6043SHong Zhang .  bs - size of block
2384c75a6043SHong Zhang .  m - number of rows
2385c75a6043SHong Zhang .  n - number of columns
2386c75a6043SHong Zhang .  i - row indices
2387c75a6043SHong Zhang .  j - column indices
2388c75a6043SHong Zhang -  a - matrix values
2389c75a6043SHong Zhang 
2390c75a6043SHong Zhang    Output Parameter:
2391c75a6043SHong Zhang .  mat - the matrix
2392c75a6043SHong Zhang 
2393dfb205c3SBarry Smith    Level: advanced
2394c75a6043SHong Zhang 
2395c75a6043SHong Zhang    Notes:
2396c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
2397c75a6043SHong Zhang     once the matrix is destroyed
2398c75a6043SHong Zhang 
2399c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
2400c75a6043SHong Zhang 
2401c75a6043SHong Zhang        The i and j indices are 0 based
2402c75a6043SHong Zhang 
2403dfb205c3SBarry Smith        When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1
2404dfb205c3SBarry Smith        it is the regular CSR format excluding the lower triangular elements.
2405dfb205c3SBarry Smith 
240669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSBAIJ(), MatCreateSeqSBAIJ()
2407c75a6043SHong Zhang 
2408c75a6043SHong Zhang @*/
24097087cfbeSBarry Smith PetscErrorCode  MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat)
2410c75a6043SHong Zhang {
2411c75a6043SHong Zhang   PetscErrorCode ierr;
2412c75a6043SHong Zhang   PetscInt       ii;
2413c75a6043SHong Zhang   Mat_SeqSBAIJ   *sbaij;
2414c75a6043SHong Zhang 
2415c75a6043SHong Zhang   PetscFunctionBegin;
2416e32f2f54SBarry Smith   if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
2417e32f2f54SBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
2418c75a6043SHong Zhang 
2419c75a6043SHong Zhang   ierr  = MatCreate(comm,mat);CHKERRQ(ierr);
2420c75a6043SHong Zhang   ierr  = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
2421c75a6043SHong Zhang   ierr  = MatSetType(*mat,MATSEQSBAIJ);CHKERRQ(ierr);
2422c75a6043SHong Zhang   ierr  = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
2423c75a6043SHong Zhang   sbaij = (Mat_SeqSBAIJ*)(*mat)->data;
2424dcca6d9dSJed Brown   ierr  = PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen);CHKERRQ(ierr);
24253bb1ff40SBarry Smith   ierr  = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr);
2426c75a6043SHong Zhang 
2427c75a6043SHong Zhang   sbaij->i = i;
2428c75a6043SHong Zhang   sbaij->j = j;
2429c75a6043SHong Zhang   sbaij->a = a;
243026fbe8dcSKarl Rupp 
2431c75a6043SHong Zhang   sbaij->singlemalloc = PETSC_FALSE;
2432c75a6043SHong Zhang   sbaij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
2433e6b907acSBarry Smith   sbaij->free_a       = PETSC_FALSE;
2434e6b907acSBarry Smith   sbaij->free_ij      = PETSC_FALSE;
2435c75a6043SHong Zhang 
2436c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
2437c75a6043SHong Zhang     sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii];
2438c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
2439e32f2f54SBarry Smith     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
2440c75a6043SHong Zhang #endif
2441c75a6043SHong Zhang   }
2442c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
2443c75a6043SHong Zhang   for (ii=0; ii<sbaij->i[m]; ii++) {
2444e32f2f54SBarry Smith     if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
2445e32f2f54SBarry Smith     if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
2446c75a6043SHong Zhang   }
2447c75a6043SHong Zhang #endif
2448c75a6043SHong Zhang 
2449c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2450c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2451c75a6043SHong Zhang   PetscFunctionReturn(0);
2452c75a6043SHong Zhang }
2453d06b337dSHong Zhang 
245459f5e6ceSHong Zhang #undef __FUNCT__
245559f5e6ceSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ"
245659f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
245759f5e6ceSHong Zhang {
245859f5e6ceSHong Zhang   PetscErrorCode ierr;
245959f5e6ceSHong Zhang 
246059f5e6ceSHong Zhang   PetscFunctionBegin;
246159f5e6ceSHong Zhang   ierr = MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
246259f5e6ceSHong Zhang   PetscFunctionReturn(0);
246359f5e6ceSHong Zhang }
2464d06b337dSHong Zhang 
2465d06b337dSHong Zhang 
246649b5e25fSSatish Balay 
246749b5e25fSSatish Balay 
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