149b5e25fSSatish Balay 249b5e25fSSatish Balay /* 3a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 449b5e25fSSatish Balay matrix storage format. 549b5e25fSSatish Balay */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 8c6db04a5SJed Brown #include <petscblaslapack.h> 949b5e25fSSatish Balay 10c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1170dcbbb9SBarry Smith #define USESHORT 12c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1370dcbbb9SBarry Smith 14ace3abfcSBarry Smith extern PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat,PetscBool); 156214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 176214f412SHong Zhang #endif 18b5b17502SBarry Smith 1949b5e25fSSatish Balay /* 2049b5e25fSSatish Balay Checks for missing diagonals 2149b5e25fSSatish Balay */ 224a2ae208SSatish Balay #undef __FUNCT__ 234a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ" 24ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool *missing,PetscInt *dd) 2549b5e25fSSatish Balay { 26045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 276849ba73SBarry Smith PetscErrorCode ierr; 287734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 2949b5e25fSSatish Balay 3049b5e25fSSatish Balay PetscFunctionBegin; 31045c9aa0SHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr); 322af78befSBarry Smith *missing = PETSC_FALSE; 337734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 34358d2f5dSShri Abhyankar *missing = PETSC_TRUE; 35358d2f5dSShri Abhyankar if (dd) *dd = 0; 36955c1f14SBarry Smith ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr); 37358d2f5dSShri Abhyankar } else { 38358d2f5dSShri Abhyankar diag = a->diag; 3949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 407734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 412af78befSBarry Smith *missing = PETSC_TRUE; 422af78befSBarry Smith if (dd) *dd = i; 432af78befSBarry Smith break; 442af78befSBarry Smith } 4549b5e25fSSatish Balay } 46358d2f5dSShri Abhyankar } 4749b5e25fSSatish Balay PetscFunctionReturn(0); 4849b5e25fSSatish Balay } 4949b5e25fSSatish Balay 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ" 52dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A) 5349b5e25fSSatish Balay { 54045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 556849ba73SBarry Smith PetscErrorCode ierr; 5648dd3d27SHong Zhang PetscInt i,j; 5749b5e25fSSatish Balay 5849b5e25fSSatish Balay PetscFunctionBegin; 5909f38230SBarry Smith if (!a->diag) { 60785e854fSJed Brown ierr = PetscMalloc1(a->mbs,&a->diag);CHKERRQ(ierr); 613bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt));CHKERRQ(ierr); 62c760cd28SBarry Smith a->free_diag = PETSC_TRUE; 6309f38230SBarry Smith } 6448dd3d27SHong Zhang for (i=0; i<a->mbs; i++) { 6548dd3d27SHong Zhang a->diag[i] = a->i[i+1]; 6648dd3d27SHong Zhang for (j=a->i[i]; j<a->i[i+1]; j++) { 6748dd3d27SHong Zhang if (a->j[j] == i) { 6848dd3d27SHong Zhang a->diag[i] = j; 6948dd3d27SHong Zhang break; 7048dd3d27SHong Zhang } 7148dd3d27SHong Zhang } 7248dd3d27SHong Zhang } 7349b5e25fSSatish Balay PetscFunctionReturn(0); 7449b5e25fSSatish Balay } 7549b5e25fSSatish Balay 764a2ae208SSatish Balay #undef __FUNCT__ 774a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ" 781a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 7949b5e25fSSatish Balay { 80a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 81d0f46423SBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs; 821a83f524SJed Brown PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 838f7157efSSatish Balay PetscErrorCode ierr; 8449b5e25fSSatish Balay 8549b5e25fSSatish Balay PetscFunctionBegin; 86d3e5a4abSHong Zhang *nn = n; 87a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 888f7157efSSatish Balay if (!blockcompressed) { 898f7157efSSatish Balay /* malloc & create the natural set of indices */ 90dcca6d9dSJed Brown ierr = PetscMalloc2((n+1)*bs,ia,nz*bs,ja);CHKERRQ(ierr); 918f7157efSSatish Balay for (i=0; i<n+1; i++) { 928f7157efSSatish Balay for (j=0; j<bs; j++) { 93c6eed6cfSHong Zhang (*ia)[i*bs+j] = a->i[i]*bs+j+oshift; 948f7157efSSatish Balay } 958f7157efSSatish Balay } 968f7157efSSatish Balay for (i=0; i<nz; i++) { 978f7157efSSatish Balay for (j=0; j<bs; j++) { 98c6eed6cfSHong Zhang (*ja)[i*bs+j] = a->j[i]*bs+j+oshift; 998f7157efSSatish Balay } 1008f7157efSSatish Balay } 1018f7157efSSatish Balay } else { /* blockcompressed */ 102a6ece127SHong Zhang if (oshift == 1) { 103a6ece127SHong Zhang /* temporarily add 1 to i and j indices */ 1046c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]++; 105a1373b80SHong Zhang for (i=0; i<n+1; i++) a->i[i]++; 1068f7157efSSatish Balay } 107a1373b80SHong Zhang *ia = a->i; *ja = a->j; 108a6ece127SHong Zhang } 10949b5e25fSSatish Balay PetscFunctionReturn(0); 11049b5e25fSSatish Balay } 11149b5e25fSSatish Balay 1124a2ae208SSatish Balay #undef __FUNCT__ 1134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ" 1141a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 11549b5e25fSSatish Balay { 116b7aaefc3SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1178f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 1188f7157efSSatish Balay PetscErrorCode ierr; 119a6ece127SHong Zhang 12049b5e25fSSatish Balay PetscFunctionBegin; 12149b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 122a6ece127SHong Zhang 1238f7157efSSatish Balay if (!blockcompressed) { 1248f7157efSSatish Balay ierr = PetscFree2(*ia,*ja);CHKERRQ(ierr); 1258f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 1266c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]--; 127a6ece127SHong Zhang for (i=0; i<n+1; i++) a->i[i]--; 128a6ece127SHong Zhang } 129a6ece127SHong Zhang PetscFunctionReturn(0); 13049b5e25fSSatish Balay } 13149b5e25fSSatish Balay 1324a2ae208SSatish Balay #undef __FUNCT__ 1334a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ" 134dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A) 13549b5e25fSSatish Balay { 13649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 137dfbe8321SBarry Smith PetscErrorCode ierr; 13849b5e25fSSatish Balay 13949b5e25fSSatish Balay PetscFunctionBegin; 140a9f03627SSatish Balay #if defined(PETSC_USE_LOG) 141d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap->N,a->nz); 142a9f03627SSatish Balay #endif 143e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1447f53bb6cSHong Zhang if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 1456bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1466bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1476bf464f9SBarry Smith ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 148c31cb41cSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 149c31cb41cSBarry Smith ierr = PetscFree(a->inode.size);CHKERRQ(ierr); 150c760cd28SBarry Smith if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 15105b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 15241f059aeSBarry Smith ierr = PetscFree(a->sor_work);CHKERRQ(ierr); 15305b42c5fSBarry Smith ierr = PetscFree(a->solves_work);CHKERRQ(ierr); 15405b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 15505b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 1564da8f245SBarry Smith if (a->free_jshort) {ierr = PetscFree(a->jshort);CHKERRQ(ierr);} 1571a3463dfSHong Zhang ierr = PetscFree(a->inew);CHKERRQ(ierr); 1586bf464f9SBarry Smith ierr = MatDestroy(&a->parent);CHKERRQ(ierr); 159bf0cc555SLisandro Dalcin ierr = PetscFree(A->data);CHKERRQ(ierr); 160901853e0SKris Buschelman 161dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 162bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 163bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 164bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr); 165bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL);CHKERRQ(ierr); 166bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL);CHKERRQ(ierr); 167bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 16838f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 169bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqsbstrm_C",NULL);CHKERRQ(ierr); 1706214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1716214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_elemental_C",NULL);CHKERRQ(ierr); 1726214f412SHong Zhang #endif 17349b5e25fSSatish Balay PetscFunctionReturn(0); 17449b5e25fSSatish Balay } 17549b5e25fSSatish Balay 1764a2ae208SSatish Balay #undef __FUNCT__ 1774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ" 178ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg) 17949b5e25fSSatish Balay { 180045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 18163ba0a88SBarry Smith PetscErrorCode ierr; 18249b5e25fSSatish Balay 18349b5e25fSSatish Balay PetscFunctionBegin; 1844d9d31abSKris Buschelman switch (op) { 1854d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 1864e0d8c25SBarry Smith a->roworiented = flg; 1874d9d31abSKris Buschelman break; 188a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 189a9817697SBarry Smith a->keepnonzeropattern = flg; 1904d9d31abSKris Buschelman break; 191512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 192512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1934d9d31abSKris Buschelman break; 1944d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1954e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1964d9d31abSKris Buschelman break; 1974d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1984e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1994d9d31abSKris Buschelman break; 20028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 20128b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 20228b2fa4aSMatthew Knepley break; 2034e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 2044d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 2054d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 206290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 2074d9d31abSKris Buschelman break; 2089a4540c5SBarry Smith case MAT_HERMITIAN: 209e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 2100bc54ff2SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 211eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian_ushort; 2120bc54ff2SBarry Smith } else if (A->cmap->bs == 1) { 213eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian; 214e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1"); 215eeffb40dSHong Zhang break; 2163d472b54SHong Zhang case MAT_SPD: 2175021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 2183d472b54SHong Zhang break; 21977e54ba9SKris Buschelman case MAT_SYMMETRIC: 22077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 2219a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 2224dcd73b1SHong Zhang /* These options are handled directly by MatSetOption() */ 223290bbb0aSBarry Smith break; 224941593c8SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 2254e0d8c25SBarry Smith a->ignore_ltriangular = flg; 226941593c8SHong Zhang break; 227941593c8SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 2284e0d8c25SBarry Smith a->ignore_ltriangular = flg; 22977e54ba9SKris Buschelman break; 230f5edf698SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 2314e0d8c25SBarry Smith a->getrow_utriangular = flg; 232f5edf698SHong Zhang break; 2334d9d31abSKris Buschelman default: 234e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 23549b5e25fSSatish Balay } 23649b5e25fSSatish Balay PetscFunctionReturn(0); 23749b5e25fSSatish Balay } 23849b5e25fSSatish Balay 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ" 24152768537SHong Zhang PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 24249b5e25fSSatish Balay { 24349b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 2446849ba73SBarry Smith PetscErrorCode ierr; 24549b5e25fSSatish Balay 24649b5e25fSSatish Balay PetscFunctionBegin; 247e32f2f54SBarry Smith if (A && !a->getrow_utriangular) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()"); 24852768537SHong Zhang 249f5edf698SHong Zhang /* Get the upper triangular part of the row */ 25052768537SHong Zhang ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr); 25149b5e25fSSatish Balay PetscFunctionReturn(0); 25249b5e25fSSatish Balay } 25349b5e25fSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 2554a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ" 25613f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 25749b5e25fSSatish Balay { 258dfbe8321SBarry Smith PetscErrorCode ierr; 25949b5e25fSSatish Balay 26049b5e25fSSatish Balay PetscFunctionBegin; 26105b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 26205b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 26349b5e25fSSatish Balay PetscFunctionReturn(0); 26449b5e25fSSatish Balay } 26549b5e25fSSatish Balay 2664a2ae208SSatish Balay #undef __FUNCT__ 267f5edf698SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_SeqSBAIJ" 268f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A) 269f5edf698SHong Zhang { 270f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 271f5edf698SHong Zhang 272f5edf698SHong Zhang PetscFunctionBegin; 273f5edf698SHong Zhang a->getrow_utriangular = PETSC_TRUE; 274f5edf698SHong Zhang PetscFunctionReturn(0); 275f5edf698SHong Zhang } 276f5edf698SHong Zhang #undef __FUNCT__ 277f5edf698SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_SeqSBAIJ" 278f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A) 279f5edf698SHong Zhang { 280f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 281f5edf698SHong Zhang 282f5edf698SHong Zhang PetscFunctionBegin; 283f5edf698SHong Zhang a->getrow_utriangular = PETSC_FALSE; 284f5edf698SHong Zhang PetscFunctionReturn(0); 285f5edf698SHong Zhang } 286f5edf698SHong Zhang 287f5edf698SHong Zhang #undef __FUNCT__ 2884a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ" 289fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B) 29049b5e25fSSatish Balay { 291dfbe8321SBarry Smith PetscErrorCode ierr; 2925fd66863SKarl Rupp 29349b5e25fSSatish Balay PetscFunctionBegin; 294815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 295999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 296fc4dec0aSBarry Smith } 2978115998fSBarry Smith PetscFunctionReturn(0); 29849b5e25fSSatish Balay } 29949b5e25fSSatish Balay 3004a2ae208SSatish Balay #undef __FUNCT__ 3014a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII" 3027da1fb6eSBarry Smith PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 30349b5e25fSSatish Balay { 30449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 305dfbe8321SBarry Smith PetscErrorCode ierr; 306d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 307f3ef73ceSBarry Smith PetscViewerFormat format; 308121deb67SSatish Balay PetscInt *diag; 30949b5e25fSSatish Balay 31049b5e25fSSatish Balay PetscFunctionBegin; 311b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 312456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 31377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 314fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 315d2507d54SMatthew Knepley Mat aij; 316ade3a672SBarry Smith const char *matname; 317ade3a672SBarry Smith 318d5f3da31SBarry Smith if (A->factortype && bs>1) { 31970d5e725SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n");CHKERRQ(ierr); 32070d5e725SHong Zhang PetscFunctionReturn(0); 32170d5e725SHong Zhang } 322c9f458caSMatthew Knepley ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 323ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr); 324ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)aij,matname);CHKERRQ(ierr); 325c9f458caSMatthew Knepley ierr = MatView(aij,viewer);CHKERRQ(ierr); 3266bf464f9SBarry Smith ierr = MatDestroy(&aij);CHKERRQ(ierr); 327fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 328d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 32949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 33049b5e25fSSatish Balay for (j=0; j<bs; j++) { 33177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 33249b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 33349b5e25fSSatish Balay for (l=0; l<bs; l++) { 33449b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 33549b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 33757622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33849b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33957622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 34057622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 34149b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 34257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 34349b5e25fSSatish Balay } 34449b5e25fSSatish Balay #else 34549b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 34657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 34749b5e25fSSatish Balay } 34849b5e25fSSatish Balay #endif 34949b5e25fSSatish Balay } 35049b5e25fSSatish Balay } 351b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 35249b5e25fSSatish Balay } 35349b5e25fSSatish Balay } 354d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 355c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 356c1490034SHong Zhang PetscFunctionReturn(0); 35749b5e25fSSatish Balay } else { 358d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 3592c990fa1SHong Zhang if (A->factortype) { /* for factored matrix */ 3602c990fa1SHong Zhang if (bs>1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet"); 3612c990fa1SHong Zhang 362121deb67SSatish Balay diag=a->diag; 363121deb67SSatish Balay for (i=0; i<a->mbs; i++) { /* for row block i */ 3642c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 3652c990fa1SHong Zhang /* diagonal entry */ 3662c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 3672c990fa1SHong Zhang if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) { 36857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3692c990fa1SHong Zhang } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) { 37057622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3712c990fa1SHong Zhang } else { 37257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3732c990fa1SHong Zhang } 3742c990fa1SHong Zhang #else 3756712e2f1SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3762c990fa1SHong Zhang #endif 3772c990fa1SHong Zhang /* off-diagonal entries */ 3782c990fa1SHong Zhang for (k=a->i[i]; k<a->i[i+1]-1; k++) { 3792c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 380ca0704adSBarry Smith if (PetscImaginaryPart(a->a[k]) > 0.0) { 38157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 382ca0704adSBarry Smith } else if (PetscImaginaryPart(a->a[k]) < 0.0) { 38357622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 3842c990fa1SHong Zhang } else { 38557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]));CHKERRQ(ierr); 3862c990fa1SHong Zhang } 3872c990fa1SHong Zhang #else 38857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[k],(double)a->a[k]);CHKERRQ(ierr); 3892c990fa1SHong Zhang #endif 3902c990fa1SHong Zhang } 3912c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 3922c990fa1SHong Zhang } 3932c990fa1SHong Zhang 3942c990fa1SHong Zhang } else { /* for non-factored matrix */ 3950c74a584SJed Brown for (i=0; i<a->mbs; i++) { /* for row block i */ 3960c74a584SJed Brown for (j=0; j<bs; j++) { /* for row bs*i + j */ 39777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 3980c74a584SJed Brown for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */ 3990c74a584SJed Brown for (l=0; l<bs; l++) { /* for column */ 40049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 40149b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 40257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 40357622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40449b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 40557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 40657622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40749b5e25fSSatish Balay } else { 40857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40949b5e25fSSatish Balay } 41049b5e25fSSatish Balay #else 41157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 41249b5e25fSSatish Balay #endif 41349b5e25fSSatish Balay } 41449b5e25fSSatish Balay } 415b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 41649b5e25fSSatish Balay } 41749b5e25fSSatish Balay } 4182c990fa1SHong Zhang } 419d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 42049b5e25fSSatish Balay } 421b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 42249b5e25fSSatish Balay PetscFunctionReturn(0); 42349b5e25fSSatish Balay } 42449b5e25fSSatish Balay 4259804daf3SBarry Smith #include <petscdraw.h> 4264a2ae208SSatish Balay #undef __FUNCT__ 4274a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom" 4286849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 42949b5e25fSSatish Balay { 43049b5e25fSSatish Balay Mat A = (Mat) Aa; 43149b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 4326849ba73SBarry Smith PetscErrorCode ierr; 433d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 43449b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 43549b5e25fSSatish Balay MatScalar *aa; 436b0a32e0cSBarry Smith PetscViewer viewer; 43749b5e25fSSatish Balay 43849b5e25fSSatish Balay PetscFunctionBegin; 43949b5e25fSSatish Balay ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 440b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 44149b5e25fSSatish Balay 44249b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 443383922c3SLisandro Dalcin 444383922c3SLisandro Dalcin ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 445383922c3SLisandro Dalcin ierr = PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");CHKERRQ(ierr); 446383922c3SLisandro Dalcin /* Blue for negative, Cyan for zero and Red for positive */ 447b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 44849b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 44949b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 450d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 45149b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 45249b5e25fSSatish Balay aa = a->a + j*bs2; 45349b5e25fSSatish Balay for (k=0; k<bs; k++) { 45449b5e25fSSatish Balay for (l=0; l<bs; l++) { 45549b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 456b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 45749b5e25fSSatish Balay } 45849b5e25fSSatish Balay } 45949b5e25fSSatish Balay } 46049b5e25fSSatish Balay } 461b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 46249b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 46349b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 464d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 46549b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 46649b5e25fSSatish Balay aa = a->a + j*bs2; 46749b5e25fSSatish Balay for (k=0; k<bs; k++) { 46849b5e25fSSatish Balay for (l=0; l<bs; l++) { 46949b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 470b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 47149b5e25fSSatish Balay } 47249b5e25fSSatish Balay } 47349b5e25fSSatish Balay } 47449b5e25fSSatish Balay } 475b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 47649b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 47749b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 478d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 47949b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 48049b5e25fSSatish Balay aa = a->a + j*bs2; 48149b5e25fSSatish Balay for (k=0; k<bs; k++) { 48249b5e25fSSatish Balay for (l=0; l<bs; l++) { 48349b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 484b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 48549b5e25fSSatish Balay } 48649b5e25fSSatish Balay } 48749b5e25fSSatish Balay } 48849b5e25fSSatish Balay } 489383922c3SLisandro Dalcin ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 49049b5e25fSSatish Balay PetscFunctionReturn(0); 49149b5e25fSSatish Balay } 49249b5e25fSSatish Balay 4934a2ae208SSatish Balay #undef __FUNCT__ 4944a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw" 4956849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 49649b5e25fSSatish Balay { 497dfbe8321SBarry Smith PetscErrorCode ierr; 49849b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 499b0a32e0cSBarry Smith PetscDraw draw; 500ace3abfcSBarry Smith PetscBool isnull; 50149b5e25fSSatish Balay 50249b5e25fSSatish Balay PetscFunctionBegin; 503b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 504383922c3SLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 505383922c3SLisandro Dalcin if (isnull) PetscFunctionReturn(0); 50649b5e25fSSatish Balay 507d0f46423SBarry Smith xr = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 50849b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 509b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 510832b7cebSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 511b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 5120298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 513832b7cebSLisandro Dalcin ierr = PetscDrawSave(draw);CHKERRQ(ierr); 51449b5e25fSSatish Balay PetscFunctionReturn(0); 51549b5e25fSSatish Balay } 51649b5e25fSSatish Balay 5174a2ae208SSatish Balay #undef __FUNCT__ 5184a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ" 519dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 52049b5e25fSSatish Balay { 521dfbe8321SBarry Smith PetscErrorCode ierr; 522ace3abfcSBarry Smith PetscBool iascii,isdraw; 52308917f38SBarry Smith FILE *file = 0; 52449b5e25fSSatish Balay 52549b5e25fSSatish Balay PetscFunctionBegin; 526251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 527251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 52832077d6dSBarry Smith if (iascii) { 52949b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 53049b5e25fSSatish Balay } else if (isdraw) { 53149b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr); 53249b5e25fSSatish Balay } else { 533a5e6ed63SBarry Smith Mat B; 534ade3a672SBarry Smith const char *matname; 535ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 536ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr); 537ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)B,matname);CHKERRQ(ierr); 538a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 5396bf464f9SBarry Smith ierr = MatDestroy(&B);CHKERRQ(ierr); 54008917f38SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 54108917f38SBarry Smith if (file) { 54208917f38SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 54308917f38SBarry Smith } 54449b5e25fSSatish Balay } 54549b5e25fSSatish Balay PetscFunctionReturn(0); 54649b5e25fSSatish Balay } 54749b5e25fSSatish Balay 54849b5e25fSSatish Balay 5494a2ae208SSatish Balay #undef __FUNCT__ 5504a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ" 55113f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 55249b5e25fSSatish Balay { 553045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 55413f74950SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 55513f74950SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 556d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 55797e567efSBarry Smith MatScalar *ap,*aa = a->a; 55849b5e25fSSatish Balay 55949b5e25fSSatish Balay PetscFunctionBegin; 56049b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 56149b5e25fSSatish Balay row = im[k]; brow = row/bs; 562e32f2f54SBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); */ 563e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 56449b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 56549b5e25fSSatish Balay nrow = ailen[brow]; 56649b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 567e32f2f54SBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); */ 568e32f2f54SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 56949b5e25fSSatish Balay col = in[l]; 57049b5e25fSSatish Balay bcol = col/bs; 57149b5e25fSSatish Balay cidx = col%bs; 57249b5e25fSSatish Balay ridx = row%bs; 57349b5e25fSSatish Balay high = nrow; 57449b5e25fSSatish Balay low = 0; /* assume unsorted */ 57549b5e25fSSatish Balay while (high-low > 5) { 57649b5e25fSSatish Balay t = (low+high)/2; 57749b5e25fSSatish Balay if (rp[t] > bcol) high = t; 57849b5e25fSSatish Balay else low = t; 57949b5e25fSSatish Balay } 58049b5e25fSSatish Balay for (i=low; i<high; i++) { 58149b5e25fSSatish Balay if (rp[i] > bcol) break; 58249b5e25fSSatish Balay if (rp[i] == bcol) { 58349b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 58449b5e25fSSatish Balay goto finished; 58549b5e25fSSatish Balay } 58649b5e25fSSatish Balay } 58797e567efSBarry Smith *v++ = 0.0; 58849b5e25fSSatish Balay finished:; 58949b5e25fSSatish Balay } 59049b5e25fSSatish Balay } 59149b5e25fSSatish Balay PetscFunctionReturn(0); 59249b5e25fSSatish Balay } 59349b5e25fSSatish Balay 59449b5e25fSSatish Balay 5954a2ae208SSatish Balay #undef __FUNCT__ 5964a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ" 59713f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 59849b5e25fSSatish Balay { 5990880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 6006849ba73SBarry Smith PetscErrorCode ierr; 601e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 60213f74950SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 603d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 604ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 605dd6ea824SBarry Smith const PetscScalar *value = v; 606f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 6070880e062SHong Zhang 60849b5e25fSSatish Balay PetscFunctionBegin; 60926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 61026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 61126fbe8dcSKarl Rupp 6120880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 6130880e062SHong Zhang row = im[k]; 6140880e062SHong Zhang if (row < 0) continue; 6152515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6162f7d4af7SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index row too large %D max %D",row,a->mbs-1); 6170880e062SHong Zhang #endif 6180880e062SHong Zhang rp = aj + ai[row]; 6190880e062SHong Zhang ap = aa + bs2*ai[row]; 6200880e062SHong Zhang rmax = imax[row]; 6210880e062SHong Zhang nrow = ailen[row]; 6220880e062SHong Zhang low = 0; 623818f2c47SBarry Smith high = nrow; 6240880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 6250880e062SHong Zhang if (in[l] < 0) continue; 6260880e062SHong Zhang col = in[l]; 6272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6282f7d4af7SBarry Smith if (col >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index column too large %D max %D",col,a->nbs-1); 629b1823623SSatish Balay #endif 630b98bf0e1SJed Brown if (col < row) { 63126fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular block */ 63226fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 633b98bf0e1SJed Brown } 63426fbe8dcSKarl Rupp if (roworiented) value = v + k*(stepval+bs)*bs + l*bs; 63526fbe8dcSKarl Rupp else value = v + l*(stepval+bs)*bs + k*bs; 63626fbe8dcSKarl Rupp 63726fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 63826fbe8dcSKarl Rupp else high = nrow; 63926fbe8dcSKarl Rupp 640e2ee6c50SBarry Smith lastcol = col; 6410880e062SHong Zhang while (high-low > 7) { 6420880e062SHong Zhang t = (low+high)/2; 6430880e062SHong Zhang if (rp[t] > col) high = t; 6440880e062SHong Zhang else low = t; 6450880e062SHong Zhang } 6460880e062SHong Zhang for (i=low; i<high; i++) { 6470880e062SHong Zhang if (rp[i] > col) break; 6480880e062SHong Zhang if (rp[i] == col) { 6490880e062SHong Zhang bap = ap + bs2*i; 6500880e062SHong Zhang if (roworiented) { 6510880e062SHong Zhang if (is == ADD_VALUES) { 6520880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6530880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6540880e062SHong Zhang bap[jj] += *value++; 6550880e062SHong Zhang } 6560880e062SHong Zhang } 6570880e062SHong Zhang } else { 6580880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6590880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6600880e062SHong Zhang bap[jj] = *value++; 6610880e062SHong Zhang } 6620880e062SHong Zhang } 6630880e062SHong Zhang } 6640880e062SHong Zhang } else { 6650880e062SHong Zhang if (is == ADD_VALUES) { 6660880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6670880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6680880e062SHong Zhang *bap++ += *value++; 6690880e062SHong Zhang } 6700880e062SHong Zhang } 6710880e062SHong Zhang } else { 6720880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6730880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6740880e062SHong Zhang *bap++ = *value++; 6750880e062SHong Zhang } 6760880e062SHong Zhang } 6770880e062SHong Zhang } 6780880e062SHong Zhang } 6790880e062SHong Zhang goto noinsert2; 6800880e062SHong Zhang } 6810880e062SHong Zhang } 6820880e062SHong Zhang if (nonew == 1) goto noinsert2; 6832f7d4af7SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", row, col); 684fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 685c03d1d03SSatish Balay N = nrow++ - 1; high++; 6860880e062SHong Zhang /* shift up all the later entries in this row */ 6870880e062SHong Zhang for (ii=N; ii>=i; ii--) { 6880880e062SHong Zhang rp[ii+1] = rp[ii]; 6890880e062SHong Zhang ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 6900880e062SHong Zhang } 6910880e062SHong Zhang if (N >= i) { 6920880e062SHong Zhang ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 6930880e062SHong Zhang } 6940880e062SHong Zhang rp[i] = col; 6950880e062SHong Zhang bap = ap + bs2*i; 6960880e062SHong Zhang if (roworiented) { 6970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6980880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6990880e062SHong Zhang bap[jj] = *value++; 7000880e062SHong Zhang } 7010880e062SHong Zhang } 7020880e062SHong Zhang } else { 7030880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7040880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7050880e062SHong Zhang *bap++ = *value++; 7060880e062SHong Zhang } 7070880e062SHong Zhang } 7080880e062SHong Zhang } 7090880e062SHong Zhang noinsert2:; 7100880e062SHong Zhang low = i; 7110880e062SHong Zhang } 7120880e062SHong Zhang ailen[row] = nrow; 7130880e062SHong Zhang } 7140880e062SHong Zhang PetscFunctionReturn(0); 71549b5e25fSSatish Balay } 71649b5e25fSSatish Balay 71764831d72SBarry Smith /* 71864831d72SBarry Smith This is not yet used 71964831d72SBarry Smith */ 7204a2ae208SSatish Balay #undef __FUNCT__ 7214108e4d5SBarry Smith #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode" 7224108e4d5SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A) 7230def2e27SBarry Smith { 7240def2e27SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7250def2e27SBarry Smith PetscErrorCode ierr; 7260def2e27SBarry Smith const PetscInt *ai = a->i, *aj = a->j,*cols; 7270def2e27SBarry Smith PetscInt i = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts; 728ace3abfcSBarry Smith PetscBool flag; 7290def2e27SBarry Smith 7300def2e27SBarry Smith PetscFunctionBegin; 731785e854fSJed Brown ierr = PetscMalloc1(m,&ns);CHKERRQ(ierr); 7320def2e27SBarry Smith while (i < m) { 7330def2e27SBarry Smith nzx = ai[i+1] - ai[i]; /* Number of nonzeros */ 7340def2e27SBarry Smith /* Limits the number of elements in a node to 'a->inode.limit' */ 7350def2e27SBarry Smith for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) { 7360def2e27SBarry Smith nzy = ai[j+1] - ai[j]; 7370def2e27SBarry Smith if (nzy != (nzx - j + i)) break; 7380def2e27SBarry Smith ierr = PetscMemcmp(aj + ai[i] + j - i,aj + ai[j],nzy*sizeof(PetscInt),&flag);CHKERRQ(ierr); 7390def2e27SBarry Smith if (!flag) break; 7400def2e27SBarry Smith } 7410def2e27SBarry Smith ns[node_count++] = blk_size; 74226fbe8dcSKarl Rupp 7430def2e27SBarry Smith i = j; 7440def2e27SBarry Smith } 7450def2e27SBarry Smith if (!a->inode.size && m && node_count > .9*m) { 7460def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7470def2e27SBarry Smith ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr); 7480def2e27SBarry Smith } else { 7490def2e27SBarry Smith a->inode.node_count = node_count; 75026fbe8dcSKarl Rupp 751785e854fSJed Brown ierr = PetscMalloc1(node_count,&a->inode.size);CHKERRQ(ierr); 7523bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt));CHKERRQ(ierr); 75322d28d08SBarry Smith ierr = PetscMemcpy(a->inode.size,ns,node_count*sizeof(PetscInt));CHKERRQ(ierr); 7540def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7550def2e27SBarry Smith ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr); 7560def2e27SBarry Smith 7570def2e27SBarry Smith /* count collections of adjacent columns in each inode */ 7580def2e27SBarry Smith row = 0; 7590def2e27SBarry Smith cnt = 0; 7600def2e27SBarry Smith for (i=0; i<node_count; i++) { 7610def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7620def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7630def2e27SBarry Smith for (j=1; j<nz; j++) { 76426fbe8dcSKarl Rupp if (cols[j] != cols[j-1]+1) cnt++; 7650def2e27SBarry Smith } 7660def2e27SBarry Smith cnt++; 7670def2e27SBarry Smith row += a->inode.size[i]; 7680def2e27SBarry Smith } 769785e854fSJed Brown ierr = PetscMalloc1(2*cnt,&counts);CHKERRQ(ierr); 7700def2e27SBarry Smith cnt = 0; 7710def2e27SBarry Smith row = 0; 7720def2e27SBarry Smith for (i=0; i<node_count; i++) { 7730def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7740def2e27SBarry Smith counts[2*cnt] = cols[0]; 7750def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7760def2e27SBarry Smith cnt2 = 1; 7770def2e27SBarry Smith for (j=1; j<nz; j++) { 7780def2e27SBarry Smith if (cols[j] != cols[j-1]+1) { 7790def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7800def2e27SBarry Smith counts[2*cnt] = cols[j]; 7810def2e27SBarry Smith cnt2 = 1; 7820def2e27SBarry Smith } else cnt2++; 7830def2e27SBarry Smith } 7840def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7850def2e27SBarry Smith row += a->inode.size[i]; 7860def2e27SBarry Smith } 78722d28d08SBarry Smith ierr = PetscIntView(2*cnt,counts,0);CHKERRQ(ierr); 7880def2e27SBarry Smith } 78938702af4SBarry Smith PetscFunctionReturn(0); 79038702af4SBarry Smith } 79138702af4SBarry Smith 79238702af4SBarry Smith #undef __FUNCT__ 7934a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ" 794dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 79549b5e25fSSatish Balay { 79649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7976849ba73SBarry Smith PetscErrorCode ierr; 79813f74950SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 799d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 80013f74950SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 80149b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 80249b5e25fSSatish Balay 80349b5e25fSSatish Balay PetscFunctionBegin; 80449b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 80549b5e25fSSatish Balay 80649b5e25fSSatish Balay if (m) rmax = ailen[0]; 80749b5e25fSSatish Balay for (i=1; i<mbs; i++) { 80849b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 80949b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 81049b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 81149b5e25fSSatish Balay if (fshift) { 81249b5e25fSSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 81349b5e25fSSatish Balay N = ailen[i]; 81449b5e25fSSatish Balay for (j=0; j<N; j++) { 81549b5e25fSSatish Balay ip[j-fshift] = ip[j]; 81649b5e25fSSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 81749b5e25fSSatish Balay } 81849b5e25fSSatish Balay } 81949b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 82049b5e25fSSatish Balay } 82149b5e25fSSatish Balay if (mbs) { 82249b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 82349b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 82449b5e25fSSatish Balay } 82549b5e25fSSatish Balay /* reset ilen and imax for each row */ 82649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 82749b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 82849b5e25fSSatish Balay } 8296c6c5352SBarry Smith a->nz = ai[mbs]; 83049b5e25fSSatish Balay 831b424e231SHong Zhang /* diagonals may have moved, reset it */ 832b424e231SHong Zhang if (a->diag) { 8332ed38d0bSJed Brown ierr = PetscMemcpy(a->diag,ai,mbs*sizeof(PetscInt));CHKERRQ(ierr); 83449b5e25fSSatish Balay } 83526fbe8dcSKarl Rupp if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 83626fbe8dcSKarl Rupp 837d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 838ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 839ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 84026fbe8dcSKarl Rupp 8418e58a170SBarry Smith A->info.mallocs += a->reallocs; 84249b5e25fSSatish Balay a->reallocs = 0; 84349b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 844061b2667SBarry Smith a->idiagvalid = PETSC_FALSE; 8454dcd73b1SHong Zhang a->rmax = rmax; 84638702af4SBarry Smith 84738702af4SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 84844e1c64aSLisandro Dalcin if (a->jshort && a->free_jshort) { 84917803ae8SHong Zhang /* when matrix data structure is changed, previous jshort must be replaced */ 85017803ae8SHong Zhang ierr = PetscFree(a->jshort);CHKERRQ(ierr); 85117803ae8SHong Zhang } 852785e854fSJed Brown ierr = PetscMalloc1(a->i[A->rmap->n],&a->jshort);CHKERRQ(ierr); 8533bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short));CHKERRQ(ierr); 85438702af4SBarry Smith for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i]; 85538702af4SBarry Smith A->ops->mult = MatMult_SeqSBAIJ_1_ushort; 85641f059aeSBarry Smith A->ops->sor = MatSOR_SeqSBAIJ_ushort; 8574da8f245SBarry Smith a->free_jshort = PETSC_TRUE; 85838702af4SBarry Smith } 85949b5e25fSSatish Balay PetscFunctionReturn(0); 86049b5e25fSSatish Balay } 86149b5e25fSSatish Balay 86249b5e25fSSatish Balay /* 86349b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 86449b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 86549b5e25fSSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 86649b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 86749b5e25fSSatish Balay */ 8684a2ae208SSatish Balay #undef __FUNCT__ 8694a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks" 87013f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 87149b5e25fSSatish Balay { 87213f74950SBarry Smith PetscInt i,j,k,row; 873ace3abfcSBarry Smith PetscBool flg; 87449b5e25fSSatish Balay 87549b5e25fSSatish Balay PetscFunctionBegin; 87649b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 87749b5e25fSSatish Balay row = idx[i]; 87849b5e25fSSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 87949b5e25fSSatish Balay sizes[j] = 1; 88049b5e25fSSatish Balay i++; 88149b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 88249b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 88349b5e25fSSatish Balay i++; 88449b5e25fSSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 88549b5e25fSSatish Balay flg = PETSC_TRUE; 88649b5e25fSSatish Balay for (k=1; k<bs; k++) { 88749b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 88849b5e25fSSatish Balay flg = PETSC_FALSE; 88949b5e25fSSatish Balay break; 89049b5e25fSSatish Balay } 89149b5e25fSSatish Balay } 892abc0a331SBarry Smith if (flg) { /* No break in the bs */ 89349b5e25fSSatish Balay sizes[j] = bs; 89449b5e25fSSatish Balay i += bs; 89549b5e25fSSatish Balay } else { 89649b5e25fSSatish Balay sizes[j] = 1; 89749b5e25fSSatish Balay i++; 89849b5e25fSSatish Balay } 89949b5e25fSSatish Balay } 90049b5e25fSSatish Balay } 90149b5e25fSSatish Balay *bs_max = j; 90249b5e25fSSatish Balay PetscFunctionReturn(0); 90349b5e25fSSatish Balay } 90449b5e25fSSatish Balay 90549b5e25fSSatish Balay 90649b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 90749b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 90849b5e25fSSatish Balay */ 90949b5e25fSSatish Balay 9104a2ae208SSatish Balay #undef __FUNCT__ 9114a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ" 91213f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 91349b5e25fSSatish Balay { 91449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 9156849ba73SBarry Smith PetscErrorCode ierr; 916e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 91713f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 918d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 91913f74950SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 92049b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 92149b5e25fSSatish Balay 92249b5e25fSSatish Balay PetscFunctionBegin; 92349b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 92449b5e25fSSatish Balay row = im[k]; /* row number */ 92549b5e25fSSatish Balay brow = row/bs; /* block row number */ 92649b5e25fSSatish Balay if (row < 0) continue; 9272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 928e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 92949b5e25fSSatish Balay #endif 93049b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 93149b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 93249b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 93349b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 93449b5e25fSSatish Balay low = 0; 93549b5e25fSSatish Balay 93649b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 93749b5e25fSSatish Balay if (in[l] < 0) continue; 9382515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 939e32f2f54SBarry Smith if (in[l] >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->rmap->N-1); 94049b5e25fSSatish Balay #endif 94149b5e25fSSatish Balay col = in[l]; 94249b5e25fSSatish Balay bcol = col/bs; /* block col number */ 94349b5e25fSSatish Balay 944941593c8SHong Zhang if (brow > bcol) { 94526fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular values */ 94626fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 947941593c8SHong Zhang } 948f4989cb3SHong Zhang 94949b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 9508549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)) { 95149b5e25fSSatish Balay /* element value a(k,l) */ 95226fbe8dcSKarl Rupp if (roworiented) value = v[l + k*n]; 95326fbe8dcSKarl Rupp else value = v[k + l*m]; 95449b5e25fSSatish Balay 95549b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 95626fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 95726fbe8dcSKarl Rupp high = nrow; 958e2ee6c50SBarry Smith lastcol = col; 95949b5e25fSSatish Balay while (high-low > 7) { 96049b5e25fSSatish Balay t = (low+high)/2; 96149b5e25fSSatish Balay if (rp[t] > bcol) high = t; 96249b5e25fSSatish Balay else low = t; 96349b5e25fSSatish Balay } 96449b5e25fSSatish Balay for (i=low; i<high; i++) { 96549b5e25fSSatish Balay if (rp[i] > bcol) break; 96649b5e25fSSatish Balay if (rp[i] == bcol) { 96749b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 96849b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 96949b5e25fSSatish Balay else *bap = value; 9708549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 9718549e402SHong Zhang if (brow == bcol && ridx < cidx) { 9728549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 9738549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 9748549e402SHong Zhang else *bap = value; 9758549e402SHong Zhang } 97649b5e25fSSatish Balay goto noinsert1; 97749b5e25fSSatish Balay } 97849b5e25fSSatish Balay } 97949b5e25fSSatish Balay 98049b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 981e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 982fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 98349b5e25fSSatish Balay 984c03d1d03SSatish Balay N = nrow++ - 1; high++; 98549b5e25fSSatish Balay /* shift up all the later entries in this row */ 98649b5e25fSSatish Balay for (ii=N; ii>=i; ii--) { 98749b5e25fSSatish Balay rp[ii+1] = rp[ii]; 98849b5e25fSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 98949b5e25fSSatish Balay } 99049b5e25fSSatish Balay if (N>=i) { 99149b5e25fSSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 99249b5e25fSSatish Balay } 99349b5e25fSSatish Balay rp[i] = bcol; 99449b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 995e56f5c9eSBarry Smith A->nonzerostate++; 99649b5e25fSSatish Balay noinsert1:; 99749b5e25fSSatish Balay low = i; 9988549e402SHong Zhang } 99949b5e25fSSatish Balay } /* end of loop over added columns */ 100049b5e25fSSatish Balay ailen[brow] = nrow; 100149b5e25fSSatish Balay } /* end of loop over added rows */ 100249b5e25fSSatish Balay PetscFunctionReturn(0); 100349b5e25fSSatish Balay } 100449b5e25fSSatish Balay 10054a2ae208SSatish Balay #undef __FUNCT__ 10064d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ" 10070481f469SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info) 100849b5e25fSSatish Balay { 10094ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 101049b5e25fSSatish Balay Mat outA; 1011dfbe8321SBarry Smith PetscErrorCode ierr; 1012ace3abfcSBarry Smith PetscBool row_identity; 101349b5e25fSSatish Balay 101449b5e25fSSatish Balay PetscFunctionBegin; 1015e32f2f54SBarry Smith if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc"); 1016c84f5b01SHong Zhang ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 1017e32f2f54SBarry Smith if (!row_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported"); 1018e32f2f54SBarry Smith if (inA->rmap->bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %D is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */ 1019c84f5b01SHong Zhang 102049b5e25fSSatish Balay outA = inA; 1021d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_ICC; 102249b5e25fSSatish Balay 10231a3463dfSHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr); 1024d595f711SHong Zhang ierr = MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity);CHKERRQ(ierr); 102549b5e25fSSatish Balay 1026c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1028c84f5b01SHong Zhang a->row = row; 1029c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10306bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1031c84f5b01SHong Zhang a->col = row; 1032c84f5b01SHong Zhang 1033c84f5b01SHong Zhang /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */ 1034c84f5b01SHong Zhang if (a->icol) {ierr = ISInvertPermutation(row,PETSC_DECIDE, &a->icol);CHKERRQ(ierr);} 10353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr); 103649b5e25fSSatish Balay 103749b5e25fSSatish Balay if (!a->solve_work) { 1038854ce69bSBarry Smith ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr); 10393bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 104049b5e25fSSatish Balay } 104149b5e25fSSatish Balay 1042719d5645SBarry Smith ierr = MatCholeskyFactorNumeric(outA,inA,info);CHKERRQ(ierr); 104349b5e25fSSatish Balay PetscFunctionReturn(0); 104449b5e25fSSatish Balay } 1045950f1e5bSHong Zhang 10464a2ae208SSatish Balay #undef __FUNCT__ 10474a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ" 10487087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices) 104949b5e25fSSatish Balay { 1050045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ*)mat->data; 105113f74950SBarry Smith PetscInt i,nz,n; 10527827cd58SJed Brown PetscErrorCode ierr; 105349b5e25fSSatish Balay 105449b5e25fSSatish Balay PetscFunctionBegin; 10556c6c5352SBarry Smith nz = baij->maxnz; 1056d0f46423SBarry Smith n = mat->cmap->n; 105726fbe8dcSKarl Rupp for (i=0; i<nz; i++) baij->j[i] = indices[i]; 105826fbe8dcSKarl Rupp 10596c6c5352SBarry Smith baij->nz = nz; 106026fbe8dcSKarl Rupp for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i]; 106126fbe8dcSKarl Rupp 10627827cd58SJed Brown ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 106349b5e25fSSatish Balay PetscFunctionReturn(0); 106449b5e25fSSatish Balay } 106549b5e25fSSatish Balay 10664a2ae208SSatish Balay #undef __FUNCT__ 10674a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices" 106849b5e25fSSatish Balay /*@ 106919585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 107049b5e25fSSatish Balay in the matrix. 107149b5e25fSSatish Balay 107249b5e25fSSatish Balay Input Parameters: 107319585528SSatish Balay + mat - the SeqSBAIJ matrix 107449b5e25fSSatish Balay - indices - the column indices 107549b5e25fSSatish Balay 107649b5e25fSSatish Balay Level: advanced 107749b5e25fSSatish Balay 107849b5e25fSSatish Balay Notes: 107949b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 108049b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 108149b5e25fSSatish Balay of the MatSetValues() operation. 108249b5e25fSSatish Balay 108349b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 1084d1be2dadSMatthew Knepley MatCreateSeqSBAIJ(), and the columns indices MUST be sorted. 108549b5e25fSSatish Balay 1086ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 108749b5e25fSSatish Balay 1088ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ 108949b5e25fSSatish Balay @*/ 10907087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices) 109149b5e25fSSatish Balay { 10924ac538c5SBarry Smith PetscErrorCode ierr; 109349b5e25fSSatish Balay 109449b5e25fSSatish Balay PetscFunctionBegin; 10950700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 10964482741eSBarry Smith PetscValidPointer(indices,2); 10974ac538c5SBarry Smith ierr = PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr); 109849b5e25fSSatish Balay PetscFunctionReturn(0); 109949b5e25fSSatish Balay } 110049b5e25fSSatish Balay 11014a2ae208SSatish Balay #undef __FUNCT__ 11023c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqSBAIJ" 11033c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str) 11043c896bc6SHong Zhang { 11053c896bc6SHong Zhang PetscErrorCode ierr; 11063c896bc6SHong Zhang 11073c896bc6SHong Zhang PetscFunctionBegin; 11083c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 11093c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 11103c896bc6SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11113c896bc6SHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 11123c896bc6SHong Zhang 1113e7e72b3dSBarry Smith if (a->i[A->rmap->N] != b->i[B->rmap->N]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1114d0f46423SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 11153c896bc6SHong Zhang } else { 1116f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 11173c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1118f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 11193c896bc6SHong Zhang } 11203c896bc6SHong Zhang PetscFunctionReturn(0); 11213c896bc6SHong Zhang } 11223c896bc6SHong Zhang 11233c896bc6SHong Zhang #undef __FUNCT__ 11244994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqSBAIJ" 11254994cf47SJed Brown PetscErrorCode MatSetUp_SeqSBAIJ(Mat A) 1126273d9f13SBarry Smith { 1127dfbe8321SBarry Smith PetscErrorCode ierr; 1128273d9f13SBarry Smith 1129273d9f13SBarry Smith PetscFunctionBegin; 1130535b19f3SBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr); 1131273d9f13SBarry Smith PetscFunctionReturn(0); 1132273d9f13SBarry Smith } 1133273d9f13SBarry Smith 1134a6ece127SHong Zhang #undef __FUNCT__ 11358c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJGetArray_SeqSBAIJ" 11368c778c55SBarry Smith PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1137a6ece127SHong Zhang { 1138a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11395fd66863SKarl Rupp 1140a6ece127SHong Zhang PetscFunctionBegin; 1141a6ece127SHong Zhang *array = a->a; 1142a6ece127SHong Zhang PetscFunctionReturn(0); 1143a6ece127SHong Zhang } 1144a6ece127SHong Zhang 1145a6ece127SHong Zhang #undef __FUNCT__ 11468c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJRestoreArray_SeqSBAIJ" 11478c778c55SBarry Smith PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1148a6ece127SHong Zhang { 1149a6ece127SHong Zhang PetscFunctionBegin; 1150a6ece127SHong Zhang PetscFunctionReturn(0); 1151a6ece127SHong Zhang } 1152a6ece127SHong Zhang 115342ee4b1aSHong Zhang #undef __FUNCT__ 115452768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqSBAIJ" 115552768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz) 115652768537SHong Zhang { 1157b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 115852768537SHong Zhang Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ*)X->data; 115952768537SHong Zhang Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ*)Y->data; 1160b264fe52SHong Zhang PetscErrorCode ierr; 116152768537SHong Zhang 116252768537SHong Zhang PetscFunctionBegin; 116352768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 1164b264fe52SHong Zhang ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr); 116552768537SHong Zhang PetscFunctionReturn(0); 116652768537SHong Zhang } 116752768537SHong Zhang 116852768537SHong Zhang #undef __FUNCT__ 116942ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ" 1170f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 117142ee4b1aSHong Zhang { 117242ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data; 1173dfbe8321SBarry Smith PetscErrorCode ierr; 117431ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 1175e838b9e7SJed Brown PetscBLASInt one = 1; 117642ee4b1aSHong Zhang 117742ee4b1aSHong Zhang PetscFunctionBegin; 117842ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 1179f4df32b1SMatthew Knepley PetscScalar alpha = a; 1180c5df96a5SBarry Smith PetscBLASInt bnz; 1181c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 11828b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1183a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1184ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1185ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1186ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1187ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 118842ee4b1aSHong Zhang } else { 118952768537SHong Zhang Mat B; 119052768537SHong Zhang PetscInt *nnz; 119152768537SHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1192f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 119352768537SHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 119452768537SHong Zhang ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr); 119552768537SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 119652768537SHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 119752768537SHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 119852768537SHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 119952768537SHong Zhang ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr); 120052768537SHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz);CHKERRQ(ierr); 120152768537SHong Zhang ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 120252768537SHong Zhang 120352768537SHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 120452768537SHong Zhang 120528be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 120652768537SHong Zhang ierr = PetscFree(nnz);CHKERRQ(ierr); 1207f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 120852768537SHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 120942ee4b1aSHong Zhang } 121042ee4b1aSHong Zhang PetscFunctionReturn(0); 121142ee4b1aSHong Zhang } 121242ee4b1aSHong Zhang 1213efcf0fc3SBarry Smith #undef __FUNCT__ 1214efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ" 1215ace3abfcSBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1216efcf0fc3SBarry Smith { 1217efcf0fc3SBarry Smith PetscFunctionBegin; 1218efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1219efcf0fc3SBarry Smith PetscFunctionReturn(0); 1220efcf0fc3SBarry Smith } 1221efcf0fc3SBarry Smith 1222efcf0fc3SBarry Smith #undef __FUNCT__ 1223efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ" 1224ace3abfcSBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool *flg) 1225efcf0fc3SBarry Smith { 1226efcf0fc3SBarry Smith PetscFunctionBegin; 1227efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1228efcf0fc3SBarry Smith PetscFunctionReturn(0); 1229efcf0fc3SBarry Smith } 1230efcf0fc3SBarry Smith 1231efcf0fc3SBarry Smith #undef __FUNCT__ 1232efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ" 1233ace3abfcSBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1234efcf0fc3SBarry Smith { 1235efcf0fc3SBarry Smith PetscFunctionBegin; 1236efcf0fc3SBarry Smith *flg = PETSC_FALSE; 1237efcf0fc3SBarry Smith PetscFunctionReturn(0); 1238efcf0fc3SBarry Smith } 1239efcf0fc3SBarry Smith 124099cafbc1SBarry Smith #undef __FUNCT__ 124199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqSBAIJ" 124299cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A) 124399cafbc1SBarry Smith { 124499cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 124599cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1246dd6ea824SBarry Smith MatScalar *aa = a->a; 124799cafbc1SBarry Smith 124899cafbc1SBarry Smith PetscFunctionBegin; 124999cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 125099cafbc1SBarry Smith PetscFunctionReturn(0); 125199cafbc1SBarry Smith } 125299cafbc1SBarry Smith 125399cafbc1SBarry Smith #undef __FUNCT__ 125499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqSBAIJ" 125599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A) 125699cafbc1SBarry Smith { 125799cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 125899cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1259dd6ea824SBarry Smith MatScalar *aa = a->a; 126099cafbc1SBarry Smith 126199cafbc1SBarry Smith PetscFunctionBegin; 126299cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 126399cafbc1SBarry Smith PetscFunctionReturn(0); 126499cafbc1SBarry Smith } 126599cafbc1SBarry Smith 12663bededecSBarry Smith #undef __FUNCT__ 12673bededecSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqSBAIJ" 12683bededecSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 12693bededecSBarry Smith { 12703bededecSBarry Smith Mat_SeqSBAIJ *baij=(Mat_SeqSBAIJ*)A->data; 12713bededecSBarry Smith PetscErrorCode ierr; 12723bededecSBarry Smith PetscInt i,j,k,count; 12733bededecSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 12743bededecSBarry Smith PetscScalar zero = 0.0; 12753bededecSBarry Smith MatScalar *aa; 12763bededecSBarry Smith const PetscScalar *xx; 12773bededecSBarry Smith PetscScalar *bb; 127856777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 12793bededecSBarry Smith 12803bededecSBarry Smith PetscFunctionBegin; 12813bededecSBarry Smith /* fix right hand side if needed */ 12823bededecSBarry Smith if (x && b) { 12833bededecSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 12843bededecSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 128556777dd2SBarry Smith vecs = PETSC_TRUE; 12863bededecSBarry Smith } 12873bededecSBarry Smith 12883bededecSBarry Smith /* zero the columns */ 12891795a4d1SJed Brown ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr); 12903bededecSBarry Smith for (i=0; i<is_n; i++) { 12913bededecSBarry Smith if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]); 12923bededecSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 12933bededecSBarry Smith } 129456777dd2SBarry Smith if (vecs) { 129556777dd2SBarry Smith for (i=0; i<A->rmap->N; i++) { 129656777dd2SBarry Smith row = i/bs; 129756777dd2SBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 129856777dd2SBarry Smith for (k=0; k<bs; k++) { 129956777dd2SBarry Smith col = bs*baij->j[j] + k; 130056777dd2SBarry Smith if (col <= i) continue; 130156777dd2SBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 130226fbe8dcSKarl Rupp if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0]*xx[col]; 130326fbe8dcSKarl Rupp if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i]; 130456777dd2SBarry Smith } 130556777dd2SBarry Smith } 130656777dd2SBarry Smith } 130726fbe8dcSKarl Rupp for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]]; 130856777dd2SBarry Smith } 130956777dd2SBarry Smith 13103bededecSBarry Smith for (i=0; i<A->rmap->N; i++) { 13113bededecSBarry Smith if (!zeroed[i]) { 13123bededecSBarry Smith row = i/bs; 13133bededecSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 13143bededecSBarry Smith for (k=0; k<bs; k++) { 13153bededecSBarry Smith col = bs*baij->j[j] + k; 13163bededecSBarry Smith if (zeroed[col]) { 13173bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 13183bededecSBarry Smith aa[0] = 0.0; 13193bededecSBarry Smith } 13203bededecSBarry Smith } 13213bededecSBarry Smith } 13223bededecSBarry Smith } 13233bededecSBarry Smith } 13243bededecSBarry Smith ierr = PetscFree(zeroed);CHKERRQ(ierr); 132556777dd2SBarry Smith if (vecs) { 132656777dd2SBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 132756777dd2SBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 132856777dd2SBarry Smith } 13293bededecSBarry Smith 13303bededecSBarry Smith /* zero the rows */ 13313bededecSBarry Smith for (i=0; i<is_n; i++) { 13323bededecSBarry Smith row = is_idx[i]; 13333bededecSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 13343bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 13353bededecSBarry Smith for (k=0; k<count; k++) { 13363bededecSBarry Smith aa[0] = zero; 13373bededecSBarry Smith aa += bs; 13383bededecSBarry Smith } 13393bededecSBarry Smith if (diag != 0.0) { 13403bededecSBarry Smith ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 13413bededecSBarry Smith } 13423bededecSBarry Smith } 13433bededecSBarry Smith ierr = MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13443bededecSBarry Smith PetscFunctionReturn(0); 13453bededecSBarry Smith } 13463bededecSBarry Smith 13477d68702bSBarry Smith #undef __FUNCT__ 13487d68702bSBarry Smith #define __FUNCT__ "MatShift_SeqSBAIJ" 13497d68702bSBarry Smith PetscErrorCode MatShift_SeqSBAIJ(Mat Y,PetscScalar a) 13507d68702bSBarry Smith { 13517d68702bSBarry Smith PetscErrorCode ierr; 13527d68702bSBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)Y->data; 13537d68702bSBarry Smith 13547d68702bSBarry Smith PetscFunctionBegin; 13556f33a894SBarry Smith if (!Y->preallocated || !aij->nz) { 13567d68702bSBarry Smith ierr = MatSeqSBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 13577d68702bSBarry Smith } 13587d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 13597d68702bSBarry Smith PetscFunctionReturn(0); 13607d68702bSBarry Smith } 13617d68702bSBarry Smith 136249b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 13633964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 136449b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 136549b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 136649b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 136797304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N, 1368431c96f7SBarry Smith MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */ 1369e005ede5SBarry Smith MatMultAdd_SeqSBAIJ_N, 1370db4efbfdSBarry Smith 0, 137149b5e25fSSatish Balay 0, 137249b5e25fSSatish Balay 0, 137397304618SKris Buschelman /* 10*/ 0, 137449b5e25fSSatish Balay 0, 1375c078aec8SLisandro Dalcin MatCholeskyFactor_SeqSBAIJ, 137641f059aeSBarry Smith MatSOR_SeqSBAIJ, 137749b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 137897304618SKris Buschelman /* 15*/ MatGetInfo_SeqSBAIJ, 137949b5e25fSSatish Balay MatEqual_SeqSBAIJ, 138049b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 138149b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 138249b5e25fSSatish Balay MatNorm_SeqSBAIJ, 138397304618SKris Buschelman /* 20*/ 0, 138449b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 138549b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 138649b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 1387d519adbfSMatthew Knepley /* 24*/ 0, 138849b5e25fSSatish Balay 0, 138949b5e25fSSatish Balay 0, 1390db4efbfdSBarry Smith 0, 1391db4efbfdSBarry Smith 0, 13924994cf47SJed Brown /* 29*/ MatSetUp_SeqSBAIJ, 1393c464158bSHong Zhang 0, 1394db4efbfdSBarry Smith 0, 13958c778c55SBarry Smith 0, 13968c778c55SBarry Smith 0, 1397d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqSBAIJ, 1398719d5645SBarry Smith 0, 1399719d5645SBarry Smith 0, 140049b5e25fSSatish Balay 0, 1401c84f5b01SHong Zhang MatICCFactor_SeqSBAIJ, 1402d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqSBAIJ, 140349b5e25fSSatish Balay MatGetSubMatrices_SeqSBAIJ, 140449b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 140549b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 14063c896bc6SHong Zhang MatCopy_SeqSBAIJ, 1407d519adbfSMatthew Knepley /* 44*/ 0, 140849b5e25fSSatish Balay MatScale_SeqSBAIJ, 14097d68702bSBarry Smith MatShift_SeqSBAIJ, 141049b5e25fSSatish Balay 0, 14113bededecSBarry Smith MatZeroRowsColumns_SeqSBAIJ, 1412f73d5cc4SBarry Smith /* 49*/ 0, 141349b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 141449b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 141549b5e25fSSatish Balay 0, 141649b5e25fSSatish Balay 0, 1417d519adbfSMatthew Knepley /* 54*/ 0, 141849b5e25fSSatish Balay 0, 141949b5e25fSSatish Balay 0, 142049b5e25fSSatish Balay 0, 142149b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 1422d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_SeqSBAIJ, 142349b5e25fSSatish Balay 0, 142449b5e25fSSatish Balay 0, 1425357abbc8SBarry Smith 0, 1426d959ec07SHong Zhang 0, 1427d519adbfSMatthew Knepley /* 64*/ 0, 1428d959ec07SHong Zhang 0, 1429d959ec07SHong Zhang 0, 1430d959ec07SHong Zhang 0, 1431d959ec07SHong Zhang 0, 1432d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqSBAIJ, 14333e0d88b5SBarry Smith 0, 14343e0d88b5SBarry Smith 0, 14353e0d88b5SBarry Smith 0, 14363e0d88b5SBarry Smith 0, 1437d519adbfSMatthew Knepley /* 74*/ 0, 14383e0d88b5SBarry Smith 0, 14393e0d88b5SBarry Smith 0, 14403e0d88b5SBarry Smith 0, 14413e0d88b5SBarry Smith 0, 1442d519adbfSMatthew Knepley /* 79*/ 0, 14433e0d88b5SBarry Smith 0, 14443e0d88b5SBarry Smith 0, 144597304618SKris Buschelman MatGetInertia_SeqSBAIJ, 14465bba2384SShri Abhyankar MatLoad_SeqSBAIJ, 1447d519adbfSMatthew Knepley /* 84*/ MatIsSymmetric_SeqSBAIJ, 1448865e5f61SKris Buschelman MatIsHermitian_SeqSBAIJ, 1449efcf0fc3SBarry Smith MatIsStructurallySymmetric_SeqSBAIJ, 1450865e5f61SKris Buschelman 0, 1451865e5f61SKris Buschelman 0, 1452d519adbfSMatthew Knepley /* 89*/ 0, 1453865e5f61SKris Buschelman 0, 1454865e5f61SKris Buschelman 0, 1455865e5f61SKris Buschelman 0, 1456865e5f61SKris Buschelman 0, 1457d519adbfSMatthew Knepley /* 94*/ 0, 1458865e5f61SKris Buschelman 0, 1459865e5f61SKris Buschelman 0, 146099cafbc1SBarry Smith 0, 146199cafbc1SBarry Smith 0, 1462d519adbfSMatthew Knepley /* 99*/ 0, 146399cafbc1SBarry Smith 0, 146499cafbc1SBarry Smith 0, 146599cafbc1SBarry Smith 0, 146699cafbc1SBarry Smith 0, 1467d519adbfSMatthew Knepley /*104*/ 0, 146899cafbc1SBarry Smith MatRealPart_SeqSBAIJ, 1469f5edf698SHong Zhang MatImaginaryPart_SeqSBAIJ, 1470f5edf698SHong Zhang MatGetRowUpperTriangular_SeqSBAIJ, 14712af78befSBarry Smith MatRestoreRowUpperTriangular_SeqSBAIJ, 1472d519adbfSMatthew Knepley /*109*/ 0, 14732af78befSBarry Smith 0, 14742af78befSBarry Smith 0, 14752af78befSBarry Smith 0, 1476547795f9SHong Zhang MatMissingDiagonal_SeqSBAIJ, 1477547795f9SHong Zhang /*114*/ 0, 1478547795f9SHong Zhang 0, 1479547795f9SHong Zhang 0, 1480547795f9SHong Zhang 0, 1481547795f9SHong Zhang 0, 1482547795f9SHong Zhang /*119*/ 0, 1483547795f9SHong Zhang 0, 14842f480046SShri Abhyankar 0, 14853964eb88SJed Brown 0, 14863964eb88SJed Brown 0, 14873964eb88SJed Brown /*124*/ 0, 14883964eb88SJed Brown 0, 14893964eb88SJed Brown 0, 14903964eb88SJed Brown 0, 14913964eb88SJed Brown 0, 14923964eb88SJed Brown /*129*/ 0, 14933964eb88SJed Brown 0, 14943964eb88SJed Brown 0, 14953964eb88SJed Brown 0, 14963964eb88SJed Brown 0, 14973964eb88SJed Brown /*134*/ 0, 14983964eb88SJed Brown 0, 14993964eb88SJed Brown 0, 15003964eb88SJed Brown 0, 15013964eb88SJed Brown 0, 15023964eb88SJed Brown /*139*/ 0, 1503f9426fe0SMark Adams 0, 150459f5e6ceSHong Zhang 0, 150559f5e6ceSHong Zhang 0, 150659f5e6ceSHong Zhang 0, 150759f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ 150899cafbc1SBarry Smith }; 1509be1d678aSKris Buschelman 15104a2ae208SSatish Balay #undef __FUNCT__ 15114a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ" 15127087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat) 151349b5e25fSSatish Balay { 15144afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 1515d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 1516dfbe8321SBarry Smith PetscErrorCode ierr; 151749b5e25fSSatish Balay 151849b5e25fSSatish Balay PetscFunctionBegin; 1519e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 152049b5e25fSSatish Balay 152149b5e25fSSatish Balay /* allocate space for values if not already there */ 152249b5e25fSSatish Balay if (!aij->saved_values) { 1523854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr); 152449b5e25fSSatish Balay } 152549b5e25fSSatish Balay 152649b5e25fSSatish Balay /* copy values over */ 152787828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 152849b5e25fSSatish Balay PetscFunctionReturn(0); 152949b5e25fSSatish Balay } 153049b5e25fSSatish Balay 15314a2ae208SSatish Balay #undef __FUNCT__ 15324a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ" 15337087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat) 153449b5e25fSSatish Balay { 15354afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 15366849ba73SBarry Smith PetscErrorCode ierr; 1537d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 153849b5e25fSSatish Balay 153949b5e25fSSatish Balay PetscFunctionBegin; 1540e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1541e7e72b3dSBarry Smith if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 154249b5e25fSSatish Balay 154349b5e25fSSatish Balay /* copy values over */ 154487828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 154549b5e25fSSatish Balay PetscFunctionReturn(0); 154649b5e25fSSatish Balay } 154749b5e25fSSatish Balay 15484a2ae208SSatish Balay #undef __FUNCT__ 1549a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ" 15507087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 155149b5e25fSSatish Balay { 1552c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 15536849ba73SBarry Smith PetscErrorCode ierr; 15544dcd73b1SHong Zhang PetscInt i,mbs,nbs,bs2; 15552576faa2SJed Brown PetscBool skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE; 155649b5e25fSSatish Balay 155749b5e25fSSatish Balay PetscFunctionBegin; 15582576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 1559273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1560db4efbfdSBarry Smith 156133d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 156226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 156326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1564e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1565899cda47SBarry Smith 1566d0f46423SBarry Smith mbs = B->rmap->N/bs; 15674dcd73b1SHong Zhang nbs = B->cmap->n/bs; 156849b5e25fSSatish Balay bs2 = bs*bs; 156949b5e25fSSatish Balay 15704dcd73b1SHong Zhang if (mbs*bs != B->rmap->N || nbs*bs!=B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 157149b5e25fSSatish Balay 1572ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 1573ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 1574ab93d7beSBarry Smith nz = 0; 1575ab93d7beSBarry Smith } 1576ab93d7beSBarry Smith 1577435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 1578e32f2f54SBarry Smith if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 157949b5e25fSSatish Balay if (nnz) { 158049b5e25fSSatish Balay for (i=0; i<mbs; i++) { 1581e32f2f54SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 1582de64b629SHong Zhang if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D block rowlength %D",i,nnz[i],nbs); 158349b5e25fSSatish Balay } 158449b5e25fSSatish Balay } 158549b5e25fSSatish Balay 1586db4efbfdSBarry Smith B->ops->mult = MatMult_SeqSBAIJ_N; 1587db4efbfdSBarry Smith B->ops->multadd = MatMultAdd_SeqSBAIJ_N; 1588db4efbfdSBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_N; 1589db4efbfdSBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N; 159026fbe8dcSKarl Rupp 1591c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 159249b5e25fSSatish Balay if (!flg) { 159349b5e25fSSatish Balay switch (bs) { 159449b5e25fSSatish Balay case 1: 159549b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 159649b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 1597431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_1; 1598431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1; 159949b5e25fSSatish Balay break; 160049b5e25fSSatish Balay case 2: 160149b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 160249b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 1603431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_2; 1604431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2; 160549b5e25fSSatish Balay break; 160649b5e25fSSatish Balay case 3: 160749b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 160849b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 1609431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_3; 1610431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3; 161149b5e25fSSatish Balay break; 161249b5e25fSSatish Balay case 4: 161349b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 161449b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 1615431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_4; 1616431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4; 161749b5e25fSSatish Balay break; 161849b5e25fSSatish Balay case 5: 161949b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 162049b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 1621431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_5; 1622431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5; 162349b5e25fSSatish Balay break; 162449b5e25fSSatish Balay case 6: 162549b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 162649b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 1627431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_6; 1628431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6; 162949b5e25fSSatish Balay break; 163049b5e25fSSatish Balay case 7: 1631de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 163249b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 1633431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_7; 1634431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7; 163549b5e25fSSatish Balay break; 163649b5e25fSSatish Balay } 163749b5e25fSSatish Balay } 163849b5e25fSSatish Balay 163949b5e25fSSatish Balay b->mbs = mbs; 16404dcd73b1SHong Zhang b->nbs = nbs; 1641ab93d7beSBarry Smith if (!skipallocation) { 16422ee49352SLisandro Dalcin if (!b->imax) { 1643dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr); 164426fbe8dcSKarl Rupp 1645c760cd28SBarry Smith b->free_imax_ilen = PETSC_TRUE; 164626fbe8dcSKarl Rupp 16473bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr); 16482ee49352SLisandro Dalcin } 164949b5e25fSSatish Balay if (!nnz) { 1650435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 165149b5e25fSSatish Balay else if (nz <= 0) nz = 1; 165226fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->imax[i] = nz; 1653153ea458SHong Zhang nz = nz*mbs; /* total nz */ 165449b5e25fSSatish Balay } else { 165549b5e25fSSatish Balay nz = 0; 16568cef66ccSHong Zhang for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 165749b5e25fSSatish Balay } 16582ee49352SLisandro Dalcin /* b->ilen will count nonzeros in each block row so far. */ 165926fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 16606c6c5352SBarry Smith /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 166149b5e25fSSatish Balay 166249b5e25fSSatish Balay /* allocate the matrix space */ 16632ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 1664dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr); 16653bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 16666c6c5352SBarry Smith ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 166713f74950SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 166826fbe8dcSKarl Rupp 166949b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 167049b5e25fSSatish Balay 167149b5e25fSSatish Balay /* pointer to beginning of each row */ 1672e60cf9a0SBarry Smith b->i[0] = 0; 167326fbe8dcSKarl Rupp for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1]; 167426fbe8dcSKarl Rupp 1675e6b907acSBarry Smith b->free_a = PETSC_TRUE; 1676e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 1677e811da20SHong Zhang } else { 1678e6b907acSBarry Smith b->free_a = PETSC_FALSE; 1679e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 1680ab93d7beSBarry Smith } 168149b5e25fSSatish Balay 1682d0f46423SBarry Smith B->rmap->bs = bs; 168349b5e25fSSatish Balay b->bs2 = bs2; 16846c6c5352SBarry Smith b->nz = 0; 1685b32cb4a7SJed Brown b->maxnz = nz; 1686153ea458SHong Zhang 168716cdd363SHong Zhang b->inew = 0; 168816cdd363SHong Zhang b->jnew = 0; 168916cdd363SHong Zhang b->anew = 0; 169016cdd363SHong Zhang b->a2anew = 0; 16911a3463dfSHong Zhang b->permute = PETSC_FALSE; 16922576faa2SJed Brown if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);} 1693c464158bSHong Zhang PetscFunctionReturn(0); 1694c464158bSHong Zhang } 1695153ea458SHong Zhang 169638f409ebSLisandro Dalcin #undef __FUNCT__ 169738f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ" 169838f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[]) 169938f409ebSLisandro Dalcin { 170038f409ebSLisandro Dalcin PetscInt i,j,m,nz,nz_max=0,*nnz; 170138f409ebSLisandro Dalcin PetscScalar *values=0; 170238f409ebSLisandro Dalcin PetscBool roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented; 170338f409ebSLisandro Dalcin PetscErrorCode ierr; 170438f409ebSLisandro Dalcin PetscFunctionBegin; 170538f409ebSLisandro Dalcin if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 170638f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 170738f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 170838f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 170938f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 171038f409ebSLisandro Dalcin ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 171138f409ebSLisandro Dalcin m = B->rmap->n/bs; 171238f409ebSLisandro Dalcin 171338f409ebSLisandro Dalcin if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1714854ce69bSBarry Smith ierr = PetscMalloc1(m+1,&nnz);CHKERRQ(ierr); 171538f409ebSLisandro Dalcin for (i=0; i<m; i++) { 171638f409ebSLisandro Dalcin nz = ii[i+1] - ii[i]; 171738f409ebSLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D has a negative number of columns %D",i,nz); 171838f409ebSLisandro Dalcin nz_max = PetscMax(nz_max,nz); 171938f409ebSLisandro Dalcin nnz[i] = nz; 172038f409ebSLisandro Dalcin } 172138f409ebSLisandro Dalcin ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 172238f409ebSLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 172338f409ebSLisandro Dalcin 172438f409ebSLisandro Dalcin values = (PetscScalar*)V; 172538f409ebSLisandro Dalcin if (!values) { 17261795a4d1SJed Brown ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 172738f409ebSLisandro Dalcin } 172838f409ebSLisandro Dalcin for (i=0; i<m; i++) { 172938f409ebSLisandro Dalcin PetscInt ncols = ii[i+1] - ii[i]; 173038f409ebSLisandro Dalcin const PetscInt *icols = jj + ii[i]; 173138f409ebSLisandro Dalcin if (!roworiented || bs == 1) { 173238f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 173338f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 173438f409ebSLisandro Dalcin } else { 173538f409ebSLisandro Dalcin for (j=0; j<ncols; j++) { 173638f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 173738f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 173838f409ebSLisandro Dalcin } 173938f409ebSLisandro Dalcin } 174038f409ebSLisandro Dalcin } 174138f409ebSLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 174238f409ebSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 174338f409ebSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 174438f409ebSLisandro Dalcin ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 174538f409ebSLisandro Dalcin PetscFunctionReturn(0); 174638f409ebSLisandro Dalcin } 174738f409ebSLisandro Dalcin 1748db4efbfdSBarry Smith /* 1749db4efbfdSBarry Smith This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization 1750db4efbfdSBarry Smith */ 17518b1456e3SHong Zhang #undef __FUNCT__ 1752d595f711SHong Zhang #define __FUNCT__ "MatSeqSBAIJSetNumericFactorization_inplace" 1753ace3abfcSBarry Smith PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural) 1754db4efbfdSBarry Smith { 1755db4efbfdSBarry Smith PetscErrorCode ierr; 1756ace3abfcSBarry Smith PetscBool flg = PETSC_FALSE; 1757db4efbfdSBarry Smith PetscInt bs = B->rmap->bs; 1758db4efbfdSBarry Smith 1759db4efbfdSBarry Smith PetscFunctionBegin; 1760c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 1761db4efbfdSBarry Smith if (flg) bs = 8; 1762db4efbfdSBarry Smith 1763db4efbfdSBarry Smith if (!natural) { 1764db4efbfdSBarry Smith switch (bs) { 1765db4efbfdSBarry Smith case 1: 1766d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace; 1767db4efbfdSBarry Smith break; 1768db4efbfdSBarry Smith case 2: 1769db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 1770db4efbfdSBarry Smith break; 1771db4efbfdSBarry Smith case 3: 1772db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 1773db4efbfdSBarry Smith break; 1774db4efbfdSBarry Smith case 4: 1775db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 1776db4efbfdSBarry Smith break; 1777db4efbfdSBarry Smith case 5: 1778db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 1779db4efbfdSBarry Smith break; 1780db4efbfdSBarry Smith case 6: 1781db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 1782db4efbfdSBarry Smith break; 1783db4efbfdSBarry Smith case 7: 1784db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 1785db4efbfdSBarry Smith break; 1786db4efbfdSBarry Smith default: 1787db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N; 1788db4efbfdSBarry Smith break; 1789db4efbfdSBarry Smith } 1790db4efbfdSBarry Smith } else { 1791db4efbfdSBarry Smith switch (bs) { 1792db4efbfdSBarry Smith case 1: 1793d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace; 1794db4efbfdSBarry Smith break; 1795db4efbfdSBarry Smith case 2: 1796db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 1797db4efbfdSBarry Smith break; 1798db4efbfdSBarry Smith case 3: 1799db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 1800db4efbfdSBarry Smith break; 1801db4efbfdSBarry Smith case 4: 1802db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 1803db4efbfdSBarry Smith break; 1804db4efbfdSBarry Smith case 5: 1805db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 1806db4efbfdSBarry Smith break; 1807db4efbfdSBarry Smith case 6: 1808db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 1809db4efbfdSBarry Smith break; 1810db4efbfdSBarry Smith case 7: 1811db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 1812db4efbfdSBarry Smith break; 1813db4efbfdSBarry Smith default: 1814db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering; 1815db4efbfdSBarry Smith break; 1816db4efbfdSBarry Smith } 1817db4efbfdSBarry Smith } 1818db4efbfdSBarry Smith PetscFunctionReturn(0); 1819db4efbfdSBarry Smith } 1820db4efbfdSBarry Smith 1821cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 1822cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType,MatReuse,Mat*); 1823d769727bSBarry Smith 18245c9eb25fSBarry Smith #undef __FUNCT__ 18255c9eb25fSBarry Smith #define __FUNCT__ "MatGetFactor_seqsbaij_petsc" 1826cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B) 18275c9eb25fSBarry Smith { 1828d0f46423SBarry Smith PetscInt n = A->rmap->n; 18295c9eb25fSBarry Smith PetscErrorCode ierr; 18305c9eb25fSBarry Smith 18315c9eb25fSBarry Smith PetscFunctionBegin; 18320e92d65fSHong Zhang #if defined(PETSC_USE_COMPLEX) 18330e92d65fSHong Zhang if (A->hermitian) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian Factor is not supported"); 18340e92d65fSHong Zhang #endif 1835ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 18365c9eb25fSBarry Smith ierr = MatSetSizes(*B,n,n,n,n);CHKERRQ(ierr); 18375c9eb25fSBarry Smith if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 18385c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQSBAIJ);CHKERRQ(ierr); 18390298fd71SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL);CHKERRQ(ierr); 184026fbe8dcSKarl Rupp 18417b056e98SHong Zhang (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ; 1842c6d0d4f0SHong Zhang (*B)->ops->iccfactorsymbolic = MatICCFactorSymbolic_SeqSBAIJ; 1843e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported"); 1844*00c67f3bSHong Zhang 1845d5f3da31SBarry Smith (*B)->factortype = ftype; 1846*00c67f3bSHong Zhang ierr = PetscFree((*B)->solvertype);CHKERRQ(ierr); 1847*00c67f3bSHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&(*B)->solvertype);CHKERRQ(ierr); 18485c9eb25fSBarry Smith PetscFunctionReturn(0); 18495c9eb25fSBarry Smith } 18505c9eb25fSBarry Smith 18510bad9183SKris Buschelman /*MC 1852fafad747SKris Buschelman MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices, 18530bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 18540bad9183SKris Buschelman 1855828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 185671dad5bbSBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); after MatAssemblyEnd() 1857828413b8SBarry Smith 18580bad9183SKris Buschelman Options Database Keys: 18590bad9183SKris Buschelman . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions() 18600bad9183SKris Buschelman 186171dad5bbSBarry Smith Notes: By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not 186271dad5bbSBarry Smith stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use 186371dad5bbSBarry Smith the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion. 186471dad5bbSBarry Smith 186571dad5bbSBarry Smith 18660bad9183SKris Buschelman Level: beginner 18670bad9183SKris Buschelman 18680bad9183SKris Buschelman .seealso: MatCreateSeqSBAIJ 18690bad9183SKris Buschelman M*/ 18700bad9183SKris Buschelman 1871cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqSBSTRM(Mat, MatType,MatReuse,Mat*); 1872aa5a9175SDahai Guo 1873a23d5eceSKris Buschelman #undef __FUNCT__ 1874a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ" 18758cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B) 1876a23d5eceSKris Buschelman { 1877a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 1878dfbe8321SBarry Smith PetscErrorCode ierr; 187913f74950SBarry Smith PetscMPIInt size; 1880ace3abfcSBarry Smith PetscBool no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE; 1881a23d5eceSKris Buschelman 1882a23d5eceSKris Buschelman PetscFunctionBegin; 1883ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1884e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1885a23d5eceSKris Buschelman 1886b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1887a23d5eceSKris Buschelman B->data = (void*)b; 1888a23d5eceSKris Buschelman ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 188926fbe8dcSKarl Rupp 1890a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1891a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1892a23d5eceSKris Buschelman b->row = 0; 1893a23d5eceSKris Buschelman b->icol = 0; 1894a23d5eceSKris Buschelman b->reallocs = 0; 1895a23d5eceSKris Buschelman b->saved_values = 0; 18960def2e27SBarry Smith b->inode.limit = 5; 18970def2e27SBarry Smith b->inode.max_limit = 5; 1898a23d5eceSKris Buschelman 1899a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1900a23d5eceSKris Buschelman b->nonew = 0; 1901a23d5eceSKris Buschelman b->diag = 0; 1902a23d5eceSKris Buschelman b->solve_work = 0; 1903a23d5eceSKris Buschelman b->mult_work = 0; 1904a23d5eceSKris Buschelman B->spptr = 0; 1905f2cbd3d5SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 1906a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 1907a23d5eceSKris Buschelman 1908a23d5eceSKris Buschelman b->inew = 0; 1909a23d5eceSKris Buschelman b->jnew = 0; 1910a23d5eceSKris Buschelman b->anew = 0; 1911a23d5eceSKris Buschelman b->a2anew = 0; 1912a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1913a23d5eceSKris Buschelman 191471dad5bbSBarry Smith b->ignore_ltriangular = PETSC_TRUE; 191526fbe8dcSKarl Rupp 1916c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL);CHKERRQ(ierr); 1917941593c8SHong Zhang 1918f5edf698SHong Zhang b->getrow_utriangular = PETSC_FALSE; 191926fbe8dcSKarl Rupp 1920c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL);CHKERRQ(ierr); 1921f5edf698SHong Zhang 1922bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ);CHKERRQ(ierr); 1923bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr); 1924bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr); 1925bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr); 1926bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr); 1927bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr); 192838f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ);CHKERRQ(ierr); 1929bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqsbstrm_C",MatConvert_SeqSBAIJ_SeqSBSTRM);CHKERRQ(ierr); 19306214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19316214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_elemental_C",MatConvert_SeqSBAIJ_Elemental);CHKERRQ(ierr); 19326214f412SHong Zhang #endif 193323ce1328SBarry Smith 193423ce1328SBarry Smith B->symmetric = PETSC_TRUE; 193523ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 193623ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 193723ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 193826fbe8dcSKarl Rupp 193917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ);CHKERRQ(ierr); 19400def2e27SBarry Smith 1941ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat");CHKERRQ(ierr); 19420298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL);CHKERRQ(ierr); 194326fbe8dcSKarl Rupp if (no_unroll) { 194426fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n");CHKERRQ(ierr); 194526fbe8dcSKarl Rupp } 19460298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL);CHKERRQ(ierr); 194726fbe8dcSKarl Rupp if (no_inode) { 194826fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n");CHKERRQ(ierr); 194926fbe8dcSKarl Rupp } 19500298fd71SBarry Smith ierr = PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL);CHKERRQ(ierr); 19510def2e27SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1952ace3abfcSBarry Smith b->inode.use = (PetscBool)(!(no_unroll || no_inode)); 19530def2e27SBarry Smith if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit; 1954a23d5eceSKris Buschelman PetscFunctionReturn(0); 1955a23d5eceSKris Buschelman } 1956a23d5eceSKris Buschelman 1957a23d5eceSKris Buschelman #undef __FUNCT__ 1958a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation" 1959a23d5eceSKris Buschelman /*@C 1960a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 1961a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 1962a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 1963a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 1964a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 1965a23d5eceSKris Buschelman 1966a23d5eceSKris Buschelman Collective on Mat 1967a23d5eceSKris Buschelman 1968a23d5eceSKris Buschelman Input Parameters: 19691c4f3114SJed Brown + B - the symmetric matrix 1970bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1971bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1972a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 1973a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 19740298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 1975a23d5eceSKris Buschelman 1976a23d5eceSKris Buschelman Options Database Keys: 1977a23d5eceSKris Buschelman . -mat_no_unroll - uses code that does not unroll the loops in the 1978a23d5eceSKris Buschelman block calculations (much slower) 1979db4efbfdSBarry Smith . -mat_block_size - size of the blocks to use (only works if a negative bs is passed in 1980a23d5eceSKris Buschelman 1981a23d5eceSKris Buschelman Level: intermediate 1982a23d5eceSKris Buschelman 1983a23d5eceSKris Buschelman Notes: 1984a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 19850298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1986a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 1987a23d5eceSKris Buschelman 1988aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1989aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1990aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1991aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1992aa95bbe8SBarry Smith 199349a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 199449a6f317SBarry Smith 199549a6f317SBarry Smith 199669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 1997a23d5eceSKris Buschelman @*/ 19987087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 199913f74950SBarry Smith { 20004ac538c5SBarry Smith PetscErrorCode ierr; 2001a23d5eceSKris Buschelman 2002a23d5eceSKris Buschelman PetscFunctionBegin; 20036ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20046ba663aaSJed Brown PetscValidType(B,1); 20056ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 20064ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr); 2007a23d5eceSKris Buschelman PetscFunctionReturn(0); 2008a23d5eceSKris Buschelman } 200949b5e25fSSatish Balay 20104a2ae208SSatish Balay #undef __FUNCT__ 201138f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR" 201238f409ebSLisandro Dalcin /*@C 201338f409ebSLisandro Dalcin MatSeqSBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in symmetric block AIJ format. 201438f409ebSLisandro Dalcin 201538f409ebSLisandro Dalcin Input Parameters: 20161c4f3114SJed Brown + B - the matrix 2017eab78319SHong Zhang . bs - size of block, the blocks are ALWAYS square. 201838f409ebSLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 201938f409ebSLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 202038f409ebSLisandro Dalcin - v - optional values in the matrix 202138f409ebSLisandro Dalcin 202238f409ebSLisandro Dalcin Level: developer 202338f409ebSLisandro Dalcin 202438f409ebSLisandro Dalcin Notes: 202538f409ebSLisandro Dalcin The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 202638f409ebSLisandro Dalcin may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 202738f409ebSLisandro Dalcin over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 202838f409ebSLisandro Dalcin MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 202938f409ebSLisandro Dalcin block column and the second index is over columns within a block. 203038f409ebSLisandro Dalcin 203138f409ebSLisandro Dalcin .keywords: matrix, block, aij, compressed row, sparse 203238f409ebSLisandro Dalcin 203338f409ebSLisandro Dalcin .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValuesBlocked(), MatSeqSBAIJSetPreallocation(), MATSEQSBAIJ 203438f409ebSLisandro Dalcin @*/ 203538f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 203638f409ebSLisandro Dalcin { 203738f409ebSLisandro Dalcin PetscErrorCode ierr; 203838f409ebSLisandro Dalcin 203938f409ebSLisandro Dalcin PetscFunctionBegin; 204038f409ebSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_CLASSID,1); 204138f409ebSLisandro Dalcin PetscValidType(B,1); 204238f409ebSLisandro Dalcin PetscValidLogicalCollectiveInt(B,bs,2); 204338f409ebSLisandro Dalcin ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 204438f409ebSLisandro Dalcin PetscFunctionReturn(0); 204538f409ebSLisandro Dalcin } 204638f409ebSLisandro Dalcin 204738f409ebSLisandro Dalcin #undef __FUNCT__ 20484a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ" 2049c464158bSHong Zhang /*@C 2050c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 2051c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 2052c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 2053c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 2054c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 205549b5e25fSSatish Balay 2056c464158bSHong Zhang Collective on MPI_Comm 2057c464158bSHong Zhang 2058c464158bSHong Zhang Input Parameters: 2059c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2060bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2061bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2062c464158bSHong Zhang . m - number of rows, or number of columns 2063c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 2064744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 20650298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 2066c464158bSHong Zhang 2067c464158bSHong Zhang Output Parameter: 2068c464158bSHong Zhang . A - the symmetric matrix 2069c464158bSHong Zhang 2070c464158bSHong Zhang Options Database Keys: 2071c464158bSHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2072c464158bSHong Zhang block calculations (much slower) 2073c464158bSHong Zhang . -mat_block_size - size of the blocks to use 2074c464158bSHong Zhang 2075c464158bSHong Zhang Level: intermediate 2076c464158bSHong Zhang 2077175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2078ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2079175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2080175b88e8SBarry Smith 2081c464158bSHong Zhang Notes: 20826d6d819aSHong Zhang The number of rows and columns must be divisible by blocksize. 20836d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2084c464158bSHong Zhang 2085c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 20860298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 2087a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 2088c464158bSHong Zhang 208949a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 209049a6f317SBarry Smith 209169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 2092c464158bSHong Zhang @*/ 20937087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 2094c464158bSHong Zhang { 2095dfbe8321SBarry Smith PetscErrorCode ierr; 2096c464158bSHong Zhang 2097c464158bSHong Zhang PetscFunctionBegin; 2098f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2099f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2100c464158bSHong Zhang ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2101ab93d7beSBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 210249b5e25fSSatish Balay PetscFunctionReturn(0); 210349b5e25fSSatish Balay } 210449b5e25fSSatish Balay 21054a2ae208SSatish Balay #undef __FUNCT__ 21064a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ" 2107dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 210849b5e25fSSatish Balay { 210949b5e25fSSatish Balay Mat C; 211049b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 21116849ba73SBarry Smith PetscErrorCode ierr; 2112b40805acSSatish Balay PetscInt i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 211349b5e25fSSatish Balay 211449b5e25fSSatish Balay PetscFunctionBegin; 2115e32f2f54SBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 211649b5e25fSSatish Balay 211749b5e25fSSatish Balay *B = 0; 2118ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr); 2119d0f46423SBarry Smith ierr = MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 21208e9a0fb8SHong Zhang ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr); 21211d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2122692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 2123692f9cbeSHong Zhang 2124273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2125d5f3da31SBarry Smith C->factortype = A->factortype; 212649b5e25fSSatish Balay c->row = 0; 212749b5e25fSSatish Balay c->icol = 0; 212849b5e25fSSatish Balay c->saved_values = 0; 2129a9817697SBarry Smith c->keepnonzeropattern = a->keepnonzeropattern; 213049b5e25fSSatish Balay C->assembled = PETSC_TRUE; 213149b5e25fSSatish Balay 21321e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 21331e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 213449b5e25fSSatish Balay c->bs2 = a->bs2; 213549b5e25fSSatish Balay c->mbs = a->mbs; 213649b5e25fSSatish Balay c->nbs = a->nbs; 213749b5e25fSSatish Balay 2138c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2139c760cd28SBarry Smith c->imax = a->imax; 2140c760cd28SBarry Smith c->ilen = a->ilen; 2141c760cd28SBarry Smith c->free_imax_ilen = PETSC_FALSE; 2142c760cd28SBarry Smith } else { 2143dcca6d9dSJed Brown ierr = PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen);CHKERRQ(ierr); 21443bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 214549b5e25fSSatish Balay for (i=0; i<mbs; i++) { 214649b5e25fSSatish Balay c->imax[i] = a->imax[i]; 214749b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 214849b5e25fSSatish Balay } 2149c760cd28SBarry Smith c->free_imax_ilen = PETSC_TRUE; 2150c760cd28SBarry Smith } 215149b5e25fSSatish Balay 215249b5e25fSSatish Balay /* allocate the matrix space */ 21534da8f245SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2154785e854fSJed Brown ierr = PetscMalloc1(bs2*nz,&c->a);CHKERRQ(ierr); 21553bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 215644e1c64aSLisandro Dalcin c->i = a->i; 215744e1c64aSLisandro Dalcin c->j = a->j; 21584da8f245SBarry Smith c->singlemalloc = PETSC_FALSE; 215944e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21604da8f245SBarry Smith c->free_ij = PETSC_FALSE; 21614da8f245SBarry Smith c->parent = A; 21624da8f245SBarry Smith ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); 21634da8f245SBarry Smith ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21644da8f245SBarry Smith ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21654da8f245SBarry Smith } else { 2166dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr); 216713f74950SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 21683bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));CHKERRQ(ierr); 21694da8f245SBarry Smith c->singlemalloc = PETSC_TRUE; 217044e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21714da8f245SBarry Smith c->free_ij = PETSC_TRUE; 21724da8f245SBarry Smith } 217349b5e25fSSatish Balay if (mbs > 0) { 21744da8f245SBarry Smith if (cpvalues != MAT_SHARE_NONZERO_PATTERN) { 217513f74950SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 21764da8f245SBarry Smith } 217749b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 217849b5e25fSSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 217949b5e25fSSatish Balay } else { 218049b5e25fSSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 218149b5e25fSSatish Balay } 2182a1c3900fSBarry Smith if (a->jshort) { 218344e1c64aSLisandro Dalcin /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */ 218444e1c64aSLisandro Dalcin /* if the parent matrix is reassembled, this child matrix will never notice */ 2185785e854fSJed Brown ierr = PetscMalloc1(nz,&c->jshort);CHKERRQ(ierr); 21863bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short));CHKERRQ(ierr); 2187a1c3900fSBarry Smith ierr = PetscMemcpy(c->jshort,a->jshort,nz*sizeof(unsigned short));CHKERRQ(ierr); 218826fbe8dcSKarl Rupp 21894da8f245SBarry Smith c->free_jshort = PETSC_TRUE; 21904da8f245SBarry Smith } 2191a1c3900fSBarry Smith } 219249b5e25fSSatish Balay 219349b5e25fSSatish Balay c->roworiented = a->roworiented; 219449b5e25fSSatish Balay c->nonew = a->nonew; 219549b5e25fSSatish Balay 219649b5e25fSSatish Balay if (a->diag) { 2197c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2198c760cd28SBarry Smith c->diag = a->diag; 2199c760cd28SBarry Smith c->free_diag = PETSC_FALSE; 2200c760cd28SBarry Smith } else { 2201785e854fSJed Brown ierr = PetscMalloc1(mbs,&c->diag);CHKERRQ(ierr); 22023bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt));CHKERRQ(ierr); 220326fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 2204c760cd28SBarry Smith c->free_diag = PETSC_TRUE; 2205c760cd28SBarry Smith } 220644e1c64aSLisandro Dalcin } 22076c6c5352SBarry Smith c->nz = a->nz; 2208f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 220949b5e25fSSatish Balay c->solve_work = 0; 221049b5e25fSSatish Balay c->mult_work = 0; 221126fbe8dcSKarl Rupp 221249b5e25fSSatish Balay *B = C; 2213140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 221449b5e25fSSatish Balay PetscFunctionReturn(0); 221549b5e25fSSatish Balay } 221649b5e25fSSatish Balay 22174a2ae208SSatish Balay #undef __FUNCT__ 22185bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqSBAIJ" 2219112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqSBAIJ(Mat newmat,PetscViewer viewer) 22202f480046SShri Abhyankar { 22212f480046SShri Abhyankar Mat_SeqSBAIJ *a; 22222f480046SShri Abhyankar PetscErrorCode ierr; 22232f480046SShri Abhyankar int fd; 22242f480046SShri Abhyankar PetscMPIInt size; 22253059b6faSBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs; 22262f480046SShri Abhyankar PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount; 22272f480046SShri Abhyankar PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols; 22282f480046SShri Abhyankar PetscInt *masked,nmask,tmp,bs2,ishift; 22292f480046SShri Abhyankar PetscScalar *aa; 2230ce94432eSBarry Smith MPI_Comm comm; 22312f480046SShri Abhyankar 22322f480046SShri Abhyankar PetscFunctionBegin; 2233c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2234c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2235ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 2236c5929fdfSBarry Smith ierr = PetscOptionsGetInt(((PetscObject)newmat)->options,((PetscObject)newmat)->prefix,"-matload_block_size",&bs,NULL);CHKERRQ(ierr); 22373059b6faSBarry Smith if (bs < 0) bs = 1; 22382f480046SShri Abhyankar bs2 = bs*bs; 22392f480046SShri Abhyankar 22402f480046SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 22412f480046SShri Abhyankar if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor"); 22422f480046SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 22432f480046SShri Abhyankar ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 22442f480046SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 22452f480046SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 22462f480046SShri Abhyankar 22472f480046SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ"); 22482f480046SShri Abhyankar 22492f480046SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 22502f480046SShri Abhyankar 22512f480046SShri Abhyankar /* 22522f480046SShri Abhyankar This code adds extra rows to make sure the number of rows is 22532f480046SShri Abhyankar divisible by the blocksize 22542f480046SShri Abhyankar */ 22552f480046SShri Abhyankar mbs = M/bs; 22562f480046SShri Abhyankar extra_rows = bs - M + bs*(mbs); 22572f480046SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 22582f480046SShri Abhyankar else mbs++; 22592f480046SShri Abhyankar if (extra_rows) { 22602f480046SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 22612f480046SShri Abhyankar } 22622f480046SShri Abhyankar 22632f480046SShri Abhyankar /* Set global sizes if not already set */ 22642f480046SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) { 22652f480046SShri Abhyankar ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 22662f480046SShri Abhyankar } else { /* Check if the matrix global sizes are correct */ 22672f480046SShri Abhyankar ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr); 22682f480046SShri Abhyankar if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols); 22692f480046SShri Abhyankar } 22702f480046SShri Abhyankar 22712f480046SShri Abhyankar /* read in row lengths */ 2272854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 22732f480046SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 22742f480046SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 22752f480046SShri Abhyankar 22762f480046SShri Abhyankar /* read in column indices */ 2277854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr); 22782f480046SShri Abhyankar ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 22792f480046SShri Abhyankar for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 22802f480046SShri Abhyankar 22812f480046SShri Abhyankar /* loop over row lengths determining block row lengths */ 22821795a4d1SJed Brown ierr = PetscCalloc1(mbs,&s_browlengths);CHKERRQ(ierr); 2283dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr); 22842f480046SShri Abhyankar ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 22852f480046SShri Abhyankar rowcount = 0; 22862f480046SShri Abhyankar nzcount = 0; 22872f480046SShri Abhyankar for (i=0; i<mbs; i++) { 22882f480046SShri Abhyankar nmask = 0; 22892f480046SShri Abhyankar for (j=0; j<bs; j++) { 22902f480046SShri Abhyankar kmax = rowlengths[rowcount]; 22912f480046SShri Abhyankar for (k=0; k<kmax; k++) { 22922f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 22932f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;} 22942f480046SShri Abhyankar } 22952f480046SShri Abhyankar rowcount++; 22962f480046SShri Abhyankar } 22972f480046SShri Abhyankar s_browlengths[i] += nmask; 22982f480046SShri Abhyankar 22992f480046SShri Abhyankar /* zero out the mask elements we set */ 23002f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 23012f480046SShri Abhyankar } 23022f480046SShri Abhyankar 23032f480046SShri Abhyankar /* Do preallocation */ 23042f480046SShri Abhyankar ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(newmat,bs,0,s_browlengths);CHKERRQ(ierr); 23052f480046SShri Abhyankar a = (Mat_SeqSBAIJ*)newmat->data; 23062f480046SShri Abhyankar 23072f480046SShri Abhyankar /* set matrix "i" values */ 23082f480046SShri Abhyankar a->i[0] = 0; 23092f480046SShri Abhyankar for (i=1; i<= mbs; i++) { 23102f480046SShri Abhyankar a->i[i] = a->i[i-1] + s_browlengths[i-1]; 23112f480046SShri Abhyankar a->ilen[i-1] = s_browlengths[i-1]; 23122f480046SShri Abhyankar } 23132f480046SShri Abhyankar a->nz = a->i[mbs]; 23142f480046SShri Abhyankar 23152f480046SShri Abhyankar /* read in nonzero values */ 2316854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr); 23172f480046SShri Abhyankar ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 23182f480046SShri Abhyankar for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 23192f480046SShri Abhyankar 23202f480046SShri Abhyankar /* set "a" and "j" values into matrix */ 23212f480046SShri Abhyankar nzcount = 0; jcount = 0; 23222f480046SShri Abhyankar for (i=0; i<mbs; i++) { 23232f480046SShri Abhyankar nzcountb = nzcount; 23242f480046SShri Abhyankar nmask = 0; 23252f480046SShri Abhyankar for (j=0; j<bs; j++) { 23262f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23272f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23282f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 23292f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;} 23302f480046SShri Abhyankar } 23312f480046SShri Abhyankar } 23322f480046SShri Abhyankar /* sort the masked values */ 23332f480046SShri Abhyankar ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 23342f480046SShri Abhyankar 23352f480046SShri Abhyankar /* set "j" values into matrix */ 23362f480046SShri Abhyankar maskcount = 1; 23372f480046SShri Abhyankar for (j=0; j<nmask; j++) { 23382f480046SShri Abhyankar a->j[jcount++] = masked[j]; 23392f480046SShri Abhyankar mask[masked[j]] = maskcount++; 23402f480046SShri Abhyankar } 23412f480046SShri Abhyankar 23422f480046SShri Abhyankar /* set "a" values into matrix */ 23432f480046SShri Abhyankar ishift = bs2*a->i[i]; 23442f480046SShri Abhyankar for (j=0; j<bs; j++) { 23452f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23462f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23472f480046SShri Abhyankar tmp = jj[nzcountb]/bs; /* block col. index */ 23482f480046SShri Abhyankar if (tmp >= i) { 23492f480046SShri Abhyankar block = mask[tmp] - 1; 23502f480046SShri Abhyankar point = jj[nzcountb] - bs*tmp; 23512f480046SShri Abhyankar idx = ishift + bs2*block + j + bs*point; 23522f480046SShri Abhyankar a->a[idx] = aa[nzcountb]; 23532f480046SShri Abhyankar } 23542f480046SShri Abhyankar nzcountb++; 23552f480046SShri Abhyankar } 23562f480046SShri Abhyankar } 23572f480046SShri Abhyankar /* zero out the mask elements we set */ 23582f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 23592f480046SShri Abhyankar } 23602f480046SShri Abhyankar if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 23612f480046SShri Abhyankar 23622f480046SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 23632f480046SShri Abhyankar ierr = PetscFree(s_browlengths);CHKERRQ(ierr); 23642f480046SShri Abhyankar ierr = PetscFree(aa);CHKERRQ(ierr); 23652f480046SShri Abhyankar ierr = PetscFree(jj);CHKERRQ(ierr); 23662f480046SShri Abhyankar ierr = PetscFree2(mask,masked);CHKERRQ(ierr); 23672f480046SShri Abhyankar 23682f480046SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23692f480046SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23702f480046SShri Abhyankar PetscFunctionReturn(0); 23712f480046SShri Abhyankar } 23722f480046SShri Abhyankar 23732f480046SShri Abhyankar #undef __FUNCT__ 2374c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqSBAIJWithArrays" 2375c75a6043SHong Zhang /*@ 2376c75a6043SHong Zhang MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements 2377c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 2378c75a6043SHong Zhang 2379c75a6043SHong Zhang Collective on MPI_Comm 2380c75a6043SHong Zhang 2381c75a6043SHong Zhang Input Parameters: 2382c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 2383c75a6043SHong Zhang . bs - size of block 2384c75a6043SHong Zhang . m - number of rows 2385c75a6043SHong Zhang . n - number of columns 2386c75a6043SHong Zhang . i - row indices 2387c75a6043SHong Zhang . j - column indices 2388c75a6043SHong Zhang - a - matrix values 2389c75a6043SHong Zhang 2390c75a6043SHong Zhang Output Parameter: 2391c75a6043SHong Zhang . mat - the matrix 2392c75a6043SHong Zhang 2393dfb205c3SBarry Smith Level: advanced 2394c75a6043SHong Zhang 2395c75a6043SHong Zhang Notes: 2396c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 2397c75a6043SHong Zhang once the matrix is destroyed 2398c75a6043SHong Zhang 2399c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 2400c75a6043SHong Zhang 2401c75a6043SHong Zhang The i and j indices are 0 based 2402c75a6043SHong Zhang 2403dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1 2404dfb205c3SBarry Smith it is the regular CSR format excluding the lower triangular elements. 2405dfb205c3SBarry Smith 240669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSBAIJ(), MatCreateSeqSBAIJ() 2407c75a6043SHong Zhang 2408c75a6043SHong Zhang @*/ 24097087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat) 2410c75a6043SHong Zhang { 2411c75a6043SHong Zhang PetscErrorCode ierr; 2412c75a6043SHong Zhang PetscInt ii; 2413c75a6043SHong Zhang Mat_SeqSBAIJ *sbaij; 2414c75a6043SHong Zhang 2415c75a6043SHong Zhang PetscFunctionBegin; 2416e32f2f54SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 2417e32f2f54SBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2418c75a6043SHong Zhang 2419c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2420c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 2421c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQSBAIJ);CHKERRQ(ierr); 2422c75a6043SHong Zhang ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 2423c75a6043SHong Zhang sbaij = (Mat_SeqSBAIJ*)(*mat)->data; 2424dcca6d9dSJed Brown ierr = PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen);CHKERRQ(ierr); 24253bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr); 2426c75a6043SHong Zhang 2427c75a6043SHong Zhang sbaij->i = i; 2428c75a6043SHong Zhang sbaij->j = j; 2429c75a6043SHong Zhang sbaij->a = a; 243026fbe8dcSKarl Rupp 2431c75a6043SHong Zhang sbaij->singlemalloc = PETSC_FALSE; 2432c75a6043SHong Zhang sbaij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 2433e6b907acSBarry Smith sbaij->free_a = PETSC_FALSE; 2434e6b907acSBarry Smith sbaij->free_ij = PETSC_FALSE; 2435c75a6043SHong Zhang 2436c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 2437c75a6043SHong Zhang sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii]; 2438c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2439e32f2f54SBarry Smith if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 2440c75a6043SHong Zhang #endif 2441c75a6043SHong Zhang } 2442c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2443c75a6043SHong Zhang for (ii=0; ii<sbaij->i[m]; ii++) { 2444e32f2f54SBarry Smith if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 2445e32f2f54SBarry Smith if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 2446c75a6043SHong Zhang } 2447c75a6043SHong Zhang #endif 2448c75a6043SHong Zhang 2449c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2450c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2451c75a6043SHong Zhang PetscFunctionReturn(0); 2452c75a6043SHong Zhang } 2453d06b337dSHong Zhang 245459f5e6ceSHong Zhang #undef __FUNCT__ 245559f5e6ceSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ" 245659f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 245759f5e6ceSHong Zhang { 245859f5e6ceSHong Zhang PetscErrorCode ierr; 245959f5e6ceSHong Zhang 246059f5e6ceSHong Zhang PetscFunctionBegin; 246159f5e6ceSHong Zhang ierr = MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr); 246259f5e6ceSHong Zhang PetscFunctionReturn(0); 246359f5e6ceSHong Zhang } 2464d06b337dSHong Zhang 2465d06b337dSHong Zhang 246649b5e25fSSatish Balay 246749b5e25fSSatish Balay 2468