149b5e25fSSatish Balay 249b5e25fSSatish Balay /* 3a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 449b5e25fSSatish Balay matrix storage format. 549b5e25fSSatish Balay */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 8c6db04a5SJed Brown #include <petscblaslapack.h> 949b5e25fSSatish Balay 10c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1170dcbbb9SBarry Smith #define USESHORT 12c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1370dcbbb9SBarry Smith 146214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 15cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 166214f412SHong Zhang #endif 17d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 18d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat,MatType,MatReuse,Mat*); 19d24d4204SJose E. Roman #endif 2028d58a37SPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat,MatType,MatReuse,Mat*); 21b5b17502SBarry Smith 2249b5e25fSSatish Balay /* 2349b5e25fSSatish Balay Checks for missing diagonals 2449b5e25fSSatish Balay */ 25ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool *missing,PetscInt *dd) 2649b5e25fSSatish Balay { 27045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 287734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 2949b5e25fSSatish Balay 3049b5e25fSSatish Balay PetscFunctionBegin; 319566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSBAIJ(A)); 322af78befSBarry Smith *missing = PETSC_FALSE; 337734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 34358d2f5dSShri Abhyankar *missing = PETSC_TRUE; 35358d2f5dSShri Abhyankar if (dd) *dd = 0; 369566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n")); 37358d2f5dSShri Abhyankar } else { 38358d2f5dSShri Abhyankar diag = a->diag; 3949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 407734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 412af78befSBarry Smith *missing = PETSC_TRUE; 422af78befSBarry Smith if (dd) *dd = i; 432af78befSBarry Smith break; 442af78befSBarry Smith } 4549b5e25fSSatish Balay } 46358d2f5dSShri Abhyankar } 4749b5e25fSSatish Balay PetscFunctionReturn(0); 4849b5e25fSSatish Balay } 4949b5e25fSSatish Balay 50dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A) 5149b5e25fSSatish Balay { 52045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 5348dd3d27SHong Zhang PetscInt i,j; 5449b5e25fSSatish Balay 5549b5e25fSSatish Balay PetscFunctionBegin; 5609f38230SBarry Smith if (!a->diag) { 579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->mbs,&a->diag)); 589566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt))); 59c760cd28SBarry Smith a->free_diag = PETSC_TRUE; 6009f38230SBarry Smith } 6148dd3d27SHong Zhang for (i=0; i<a->mbs; i++) { 6248dd3d27SHong Zhang a->diag[i] = a->i[i+1]; 6348dd3d27SHong Zhang for (j=a->i[i]; j<a->i[i+1]; j++) { 6448dd3d27SHong Zhang if (a->j[j] == i) { 6548dd3d27SHong Zhang a->diag[i] = j; 6648dd3d27SHong Zhang break; 6748dd3d27SHong Zhang } 6848dd3d27SHong Zhang } 6948dd3d27SHong Zhang } 7049b5e25fSSatish Balay PetscFunctionReturn(0); 7149b5e25fSSatish Balay } 7249b5e25fSSatish Balay 731a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 7449b5e25fSSatish Balay { 75a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 762462f5fdSStefano Zampini PetscInt i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt; 772462f5fdSStefano Zampini PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 7849b5e25fSSatish Balay 7949b5e25fSSatish Balay PetscFunctionBegin; 80d3e5a4abSHong Zhang *nn = n; 81a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 822462f5fdSStefano Zampini if (symmetric) { 839566063dSJacob Faibussowitsch PetscCall(MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,PETSC_FALSE,0,0,&tia,&tja)); 842462f5fdSStefano Zampini nz = tia[n]; 852462f5fdSStefano Zampini } else { 862462f5fdSStefano Zampini tia = a->i; tja = a->j; 872462f5fdSStefano Zampini } 882462f5fdSStefano Zampini 892462f5fdSStefano Zampini if (!blockcompressed && bs > 1) { 902462f5fdSStefano Zampini (*nn) *= bs; 918f7157efSSatish Balay /* malloc & create the natural set of indices */ 929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((n+1)*bs,ia)); 932462f5fdSStefano Zampini if (n) { 942462f5fdSStefano Zampini (*ia)[0] = oshift; 952462f5fdSStefano Zampini for (j=1; j<bs; j++) { 962462f5fdSStefano Zampini (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 972462f5fdSStefano Zampini } 982462f5fdSStefano Zampini } 992462f5fdSStefano Zampini 1002462f5fdSStefano Zampini for (i=1; i<n; i++) { 1012462f5fdSStefano Zampini (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1022462f5fdSStefano Zampini for (j=1; j<bs; j++) { 1032462f5fdSStefano Zampini (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 1042462f5fdSStefano Zampini } 1052462f5fdSStefano Zampini } 1062462f5fdSStefano Zampini if (n) { 1072462f5fdSStefano Zampini (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 1082462f5fdSStefano Zampini } 1092462f5fdSStefano Zampini 1102462f5fdSStefano Zampini if (inja) { 1119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz*bs*bs,ja)); 1122462f5fdSStefano Zampini cnt = 0; 1132462f5fdSStefano Zampini for (i=0; i<n; i++) { 1148f7157efSSatish Balay for (j=0; j<bs; j++) { 1152462f5fdSStefano Zampini for (k=tia[i]; k<tia[i+1]; k++) { 1162462f5fdSStefano Zampini for (l=0; l<bs; l++) { 1172462f5fdSStefano Zampini (*ja)[cnt++] = bs*tja[k] + l; 1188f7157efSSatish Balay } 1198f7157efSSatish Balay } 1208f7157efSSatish Balay } 1218f7157efSSatish Balay } 1228f7157efSSatish Balay } 1232462f5fdSStefano Zampini 1242462f5fdSStefano Zampini if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 1259566063dSJacob Faibussowitsch PetscCall(PetscFree(tia)); 1269566063dSJacob Faibussowitsch PetscCall(PetscFree(tja)); 1272462f5fdSStefano Zampini } 1282462f5fdSStefano Zampini } else if (oshift == 1) { 1292462f5fdSStefano Zampini if (symmetric) { 1302462f5fdSStefano Zampini nz = tia[A->rmap->n/bs]; 1312462f5fdSStefano Zampini /* add 1 to i and j indices */ 1322462f5fdSStefano Zampini for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1; 1332462f5fdSStefano Zampini *ia = tia; 1342462f5fdSStefano Zampini if (ja) { 1352462f5fdSStefano Zampini for (i=0; i<nz; i++) tja[i] = tja[i] + 1; 1362462f5fdSStefano Zampini *ja = tja; 1372462f5fdSStefano Zampini } 1382462f5fdSStefano Zampini } else { 1392462f5fdSStefano Zampini nz = a->i[A->rmap->n/bs]; 1402462f5fdSStefano Zampini /* malloc space and add 1 to i and j indices */ 1419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->n/bs+1,ia)); 1422462f5fdSStefano Zampini for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1; 1432462f5fdSStefano Zampini if (ja) { 1449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,ja)); 1452462f5fdSStefano Zampini for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1; 1462462f5fdSStefano Zampini } 1472462f5fdSStefano Zampini } 1482462f5fdSStefano Zampini } else { 1492462f5fdSStefano Zampini *ia = tia; 1502462f5fdSStefano Zampini if (ja) *ja = tja; 151a6ece127SHong Zhang } 15249b5e25fSSatish Balay PetscFunctionReturn(0); 15349b5e25fSSatish Balay } 15449b5e25fSSatish Balay 1551a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 15649b5e25fSSatish Balay { 15749b5e25fSSatish Balay PetscFunctionBegin; 15849b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 1592462f5fdSStefano Zampini if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) { 1609566063dSJacob Faibussowitsch PetscCall(PetscFree(*ia)); 1619566063dSJacob Faibussowitsch if (ja) PetscCall(PetscFree(*ja)); 162a6ece127SHong Zhang } 163a6ece127SHong Zhang PetscFunctionReturn(0); 16449b5e25fSSatish Balay } 16549b5e25fSSatish Balay 166dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A) 16749b5e25fSSatish Balay { 16849b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 16949b5e25fSSatish Balay 17049b5e25fSSatish Balay PetscFunctionBegin; 171a9f03627SSatish Balay #if defined(PETSC_USE_LOG) 172c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->N,a->nz); 173a9f03627SSatish Balay #endif 1749566063dSJacob Faibussowitsch PetscCall(MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i)); 1759566063dSJacob Faibussowitsch if (a->free_diag) PetscCall(PetscFree(a->diag)); 1769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 1779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 1789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 1799566063dSJacob Faibussowitsch PetscCall(PetscFree(a->idiag)); 1809566063dSJacob Faibussowitsch PetscCall(PetscFree(a->inode.size)); 1819566063dSJacob Faibussowitsch if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax,a->ilen)); 1829566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 1839566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sor_work)); 1849566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solves_work)); 1859566063dSJacob Faibussowitsch PetscCall(PetscFree(a->mult_work)); 1869566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 1879566063dSJacob Faibussowitsch if (a->free_jshort) PetscCall(PetscFree(a->jshort)); 1889566063dSJacob Faibussowitsch PetscCall(PetscFree(a->inew)); 1899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&a->parent)); 1909566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 191901853e0SKris Buschelman 1929566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A,NULL)); 193*2e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJGetArray_C",NULL)); 194*2e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJRestoreArray_C",NULL)); 1959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL)); 1969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL)); 1979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL)); 1989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL)); 1999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL)); 2009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL)); 2026214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_elemental_C",NULL)); 2046214f412SHong Zhang #endif 205d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_scalapack_C",NULL)); 207d24d4204SJose E. Roman #endif 208*2e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverType_C",NULL)); 20949b5e25fSSatish Balay PetscFunctionReturn(0); 21049b5e25fSSatish Balay } 21149b5e25fSSatish Balay 212ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg) 21349b5e25fSSatish Balay { 214045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 215eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 216eb1ec7c1SStefano Zampini PetscInt bs; 217eb1ec7c1SStefano Zampini #endif 21849b5e25fSSatish Balay 21949b5e25fSSatish Balay PetscFunctionBegin; 220eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 2219566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A,&bs)); 222eb1ec7c1SStefano Zampini #endif 2234d9d31abSKris Buschelman switch (op) { 2244d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 2254e0d8c25SBarry Smith a->roworiented = flg; 2264d9d31abSKris Buschelman break; 227a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 228a9817697SBarry Smith a->keepnonzeropattern = flg; 2294d9d31abSKris Buschelman break; 230512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 231512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 2324d9d31abSKris Buschelman break; 2334d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 2344e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 2354d9d31abSKris Buschelman break; 2364d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 2374e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 2384d9d31abSKris Buschelman break; 23928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 24028b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 24128b2fa4aSMatthew Knepley break; 2428c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 2434d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 2444d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 245071fcb05SBarry Smith case MAT_SORTED_FULL: 2469566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 2474d9d31abSKris Buschelman break; 2489a4540c5SBarry Smith case MAT_HERMITIAN: 249eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 250eb1ec7c1SStefano Zampini if (flg) { /* disable transpose ops */ 25108401ef6SPierre Jolivet PetscCheck(bs <= 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1"); 252eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL; 253eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL; 254eb1ec7c1SStefano Zampini A->symmetric = PETSC_FALSE; 255eb1ec7c1SStefano Zampini } 2560f2140c7SStefano Zampini #endif 257eeffb40dSHong Zhang break; 25877e54ba9SKris Buschelman case MAT_SYMMETRIC: 259eb1ec7c1SStefano Zampini case MAT_SPD: 260eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 261eb1ec7c1SStefano Zampini if (flg) { /* An hermitian and symmetric matrix has zero imaginary part (restore back transpose ops) */ 262eb1ec7c1SStefano Zampini A->ops->multtranspose = A->ops->mult; 263eb1ec7c1SStefano Zampini A->ops->multtransposeadd = A->ops->multadd; 264eb1ec7c1SStefano Zampini } 265eb1ec7c1SStefano Zampini #endif 266eb1ec7c1SStefano Zampini break; 267eb1ec7c1SStefano Zampini /* These options are handled directly by MatSetOption() */ 26877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 2699a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 270672ba085SHong Zhang case MAT_STRUCTURE_ONLY: 2714dcd73b1SHong Zhang /* These options are handled directly by MatSetOption() */ 272290bbb0aSBarry Smith break; 273941593c8SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 2744e0d8c25SBarry Smith a->ignore_ltriangular = flg; 275941593c8SHong Zhang break; 276941593c8SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 2774e0d8c25SBarry Smith a->ignore_ltriangular = flg; 27877e54ba9SKris Buschelman break; 279f5edf698SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 2804e0d8c25SBarry Smith a->getrow_utriangular = flg; 281f5edf698SHong Zhang break; 282c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 283c10200c1SHong Zhang break; 2844d9d31abSKris Buschelman default: 28598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 28649b5e25fSSatish Balay } 28749b5e25fSSatish Balay PetscFunctionReturn(0); 28849b5e25fSSatish Balay } 28949b5e25fSSatish Balay 29052768537SHong Zhang PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 29149b5e25fSSatish Balay { 29249b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 29349b5e25fSSatish Balay 29449b5e25fSSatish Balay PetscFunctionBegin; 29508401ef6SPierre Jolivet PetscCheck(!A || a->getrow_utriangular,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()"); 29652768537SHong Zhang 297f5edf698SHong Zhang /* Get the upper triangular part of the row */ 2989566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a)); 29949b5e25fSSatish Balay PetscFunctionReturn(0); 30049b5e25fSSatish Balay } 30149b5e25fSSatish Balay 30213f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 30349b5e25fSSatish Balay { 30449b5e25fSSatish Balay PetscFunctionBegin; 305cb4a9cd9SHong Zhang if (nz) *nz = 0; 3069566063dSJacob Faibussowitsch if (idx) PetscCall(PetscFree(*idx)); 3079566063dSJacob Faibussowitsch if (v) PetscCall(PetscFree(*v)); 30849b5e25fSSatish Balay PetscFunctionReturn(0); 30949b5e25fSSatish Balay } 31049b5e25fSSatish Balay 311f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A) 312f5edf698SHong Zhang { 313f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 314f5edf698SHong Zhang 315f5edf698SHong Zhang PetscFunctionBegin; 316f5edf698SHong Zhang a->getrow_utriangular = PETSC_TRUE; 317f5edf698SHong Zhang PetscFunctionReturn(0); 318f5edf698SHong Zhang } 319a323099bSStefano Zampini 320f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A) 321f5edf698SHong Zhang { 322f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 323f5edf698SHong Zhang 324f5edf698SHong Zhang PetscFunctionBegin; 325f5edf698SHong Zhang a->getrow_utriangular = PETSC_FALSE; 326f5edf698SHong Zhang PetscFunctionReturn(0); 327f5edf698SHong Zhang } 328f5edf698SHong Zhang 329fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B) 33049b5e25fSSatish Balay { 33149b5e25fSSatish Balay PetscFunctionBegin; 332cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 3339566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A,MAT_COPY_VALUES,B)); 334cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) { 3359566063dSJacob Faibussowitsch PetscCall(MatCopy(A,*B,SAME_NONZERO_PATTERN)); 336fc4dec0aSBarry Smith } 3378115998fSBarry Smith PetscFunctionReturn(0); 33849b5e25fSSatish Balay } 33949b5e25fSSatish Balay 3407da1fb6eSBarry Smith PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 34149b5e25fSSatish Balay { 34249b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 343d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 344f3ef73ceSBarry Smith PetscViewerFormat format; 345121deb67SSatish Balay PetscInt *diag; 34649b5e25fSSatish Balay 34749b5e25fSSatish Balay PetscFunctionBegin; 3489566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 349456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 3509566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 351fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 352d2507d54SMatthew Knepley Mat aij; 353ade3a672SBarry Smith const char *matname; 354ade3a672SBarry Smith 355d5f3da31SBarry Smith if (A->factortype && bs>1) { 3569566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n")); 35770d5e725SHong Zhang PetscFunctionReturn(0); 35870d5e725SHong Zhang } 3599566063dSJacob Faibussowitsch PetscCall(MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij)); 3609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A,&matname)); 3619566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij,matname)); 3629566063dSJacob Faibussowitsch PetscCall(MatView(aij,viewer)); 3639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aij)); 364fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 3659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 36649b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 36749b5e25fSSatish Balay for (j=0; j<bs; j++) { 3689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i*bs+j)); 36949b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 37049b5e25fSSatish Balay for (l=0; l<bs; l++) { 37149b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 37249b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 3739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",bs*a->j[k]+l, 3745f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 37549b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 3769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i) ",bs*a->j[k]+l, 3775f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 37849b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 3799566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]))); 38049b5e25fSSatish Balay } 38149b5e25fSSatish Balay #else 38249b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 3839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j])); 38449b5e25fSSatish Balay } 38549b5e25fSSatish Balay #endif 38649b5e25fSSatish Balay } 38749b5e25fSSatish Balay } 3889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 38949b5e25fSSatish Balay } 39049b5e25fSSatish Balay } 3919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 392c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 393c1490034SHong Zhang PetscFunctionReturn(0); 39449b5e25fSSatish Balay } else { 3959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 3962c990fa1SHong Zhang if (A->factortype) { /* for factored matrix */ 39708401ef6SPierre Jolivet PetscCheck(bs<=1,PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet"); 3982c990fa1SHong Zhang 399121deb67SSatish Balay diag=a->diag; 400121deb67SSatish Balay for (i=0; i<a->mbs; i++) { /* for row block i */ 4019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 4022c990fa1SHong Zhang /* diagonal entry */ 4032c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 4042c990fa1SHong Zhang if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) { 4059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]))); 4062c990fa1SHong Zhang } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) { 4079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]))); 4082c990fa1SHong Zhang } else { 4099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]))); 4102c990fa1SHong Zhang } 4112c990fa1SHong Zhang #else 4129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]))); 4132c990fa1SHong Zhang #endif 4142c990fa1SHong Zhang /* off-diagonal entries */ 4152c990fa1SHong Zhang for (k=a->i[i]; k<a->i[i+1]-1; k++) { 4162c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 417ca0704adSBarry Smith if (PetscImaginaryPart(a->a[k]) > 0.0) { 4189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]))); 419ca0704adSBarry Smith } else if (PetscImaginaryPart(a->a[k]) < 0.0) { 4209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]))); 4212c990fa1SHong Zhang } else { 4229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]))); 4232c990fa1SHong Zhang } 4242c990fa1SHong Zhang #else 4259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->j[k],(double)a->a[k])); 4262c990fa1SHong Zhang #endif 4272c990fa1SHong Zhang } 4289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 4292c990fa1SHong Zhang } 4302c990fa1SHong Zhang 4312c990fa1SHong Zhang } else { /* for non-factored matrix */ 4320c74a584SJed Brown for (i=0; i<a->mbs; i++) { /* for row block i */ 4330c74a584SJed Brown for (j=0; j<bs; j++) { /* for row bs*i + j */ 4349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i*bs+j)); 4350c74a584SJed Brown for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */ 4360c74a584SJed Brown for (l=0; l<bs; l++) { /* for column */ 43749b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 43849b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 4399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",bs*a->j[k]+l, 4405f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 44149b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 4429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i) ",bs*a->j[k]+l, 4435f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 44449b5e25fSSatish Balay } else { 4459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]))); 44649b5e25fSSatish Balay } 44749b5e25fSSatish Balay #else 4489566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j])); 44949b5e25fSSatish Balay #endif 45049b5e25fSSatish Balay } 45149b5e25fSSatish Balay } 4529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 45349b5e25fSSatish Balay } 45449b5e25fSSatish Balay } 4552c990fa1SHong Zhang } 4569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 45749b5e25fSSatish Balay } 4589566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 45949b5e25fSSatish Balay PetscFunctionReturn(0); 46049b5e25fSSatish Balay } 46149b5e25fSSatish Balay 4629804daf3SBarry Smith #include <petscdraw.h> 4636849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 46449b5e25fSSatish Balay { 46549b5e25fSSatish Balay Mat A = (Mat) Aa; 46649b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 467d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 46849b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 46949b5e25fSSatish Balay MatScalar *aa; 470b0a32e0cSBarry Smith PetscViewer viewer; 47149b5e25fSSatish Balay 47249b5e25fSSatish Balay PetscFunctionBegin; 4739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer)); 4749566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr)); 47549b5e25fSSatish Balay 47649b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 477383922c3SLisandro Dalcin 478d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 4799566063dSJacob Faibussowitsch PetscCall(PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric")); 480383922c3SLisandro Dalcin /* Blue for negative, Cyan for zero and Red for positive */ 481b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 48249b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 48349b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 484d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 48549b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 48649b5e25fSSatish Balay aa = a->a + j*bs2; 48749b5e25fSSatish Balay for (k=0; k<bs; k++) { 48849b5e25fSSatish Balay for (l=0; l<bs; l++) { 48949b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 4909566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 49149b5e25fSSatish Balay } 49249b5e25fSSatish Balay } 49349b5e25fSSatish Balay } 49449b5e25fSSatish Balay } 495b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 49649b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 49749b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 498d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 49949b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 50049b5e25fSSatish Balay aa = a->a + j*bs2; 50149b5e25fSSatish Balay for (k=0; k<bs; k++) { 50249b5e25fSSatish Balay for (l=0; l<bs; l++) { 50349b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 5049566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 50549b5e25fSSatish Balay } 50649b5e25fSSatish Balay } 50749b5e25fSSatish Balay } 50849b5e25fSSatish Balay } 509b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 51049b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 51149b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 512d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 51349b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 51449b5e25fSSatish Balay aa = a->a + j*bs2; 51549b5e25fSSatish Balay for (k=0; k<bs; k++) { 51649b5e25fSSatish Balay for (l=0; l<bs; l++) { 51749b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 5189566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 51949b5e25fSSatish Balay } 52049b5e25fSSatish Balay } 52149b5e25fSSatish Balay } 52249b5e25fSSatish Balay } 523d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 52449b5e25fSSatish Balay PetscFunctionReturn(0); 52549b5e25fSSatish Balay } 52649b5e25fSSatish Balay 5276849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 52849b5e25fSSatish Balay { 52949b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 530b0a32e0cSBarry Smith PetscDraw draw; 531ace3abfcSBarry Smith PetscBool isnull; 53249b5e25fSSatish Balay 53349b5e25fSSatish Balay PetscFunctionBegin; 5349566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 5359566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 536383922c3SLisandro Dalcin if (isnull) PetscFunctionReturn(0); 53749b5e25fSSatish Balay 538d0f46423SBarry Smith xr = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 53949b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 5409566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw,xl,yl,xr,yr)); 5419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer)); 5429566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A)); 5439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL)); 5449566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 54549b5e25fSSatish Balay PetscFunctionReturn(0); 54649b5e25fSSatish Balay } 54749b5e25fSSatish Balay 548618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 549618cc2edSLisandro Dalcin #define MatView_SeqSBAIJ_Binary MatView_SeqBAIJ_Binary 550618cc2edSLisandro Dalcin 551dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 55249b5e25fSSatish Balay { 553618cc2edSLisandro Dalcin PetscBool iascii,isbinary,isdraw; 55449b5e25fSSatish Balay 55549b5e25fSSatish Balay PetscFunctionBegin; 5569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 5579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 5589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 55932077d6dSBarry Smith if (iascii) { 5609566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ_ASCII(A,viewer)); 561618cc2edSLisandro Dalcin } else if (isbinary) { 5629566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ_Binary(A,viewer)); 56349b5e25fSSatish Balay } else if (isdraw) { 5649566063dSJacob Faibussowitsch PetscCall(MatView_SeqSBAIJ_Draw(A,viewer)); 56549b5e25fSSatish Balay } else { 566a5e6ed63SBarry Smith Mat B; 567ade3a672SBarry Smith const char *matname; 5689566063dSJacob Faibussowitsch PetscCall(MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 5699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A,&matname)); 5709566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,matname)); 5719566063dSJacob Faibussowitsch PetscCall(MatView(B,viewer)); 5729566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 57349b5e25fSSatish Balay } 57449b5e25fSSatish Balay PetscFunctionReturn(0); 57549b5e25fSSatish Balay } 57649b5e25fSSatish Balay 57713f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 57849b5e25fSSatish Balay { 579045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 58013f74950SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 58113f74950SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 582d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 58397e567efSBarry Smith MatScalar *ap,*aa = a->a; 58449b5e25fSSatish Balay 58549b5e25fSSatish Balay PetscFunctionBegin; 58649b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 58749b5e25fSSatish Balay row = im[k]; brow = row/bs; 58854c59aa7SJacob Faibussowitsch if (row < 0) {v += n; continue;} /* negative row */ 58954c59aa7SJacob Faibussowitsch PetscCheck(row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->N-1); 59049b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 59149b5e25fSSatish Balay nrow = ailen[brow]; 59249b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 59354c59aa7SJacob Faibussowitsch if (in[l] < 0) {v++; continue;} /* negative column */ 59454c59aa7SJacob Faibussowitsch PetscCheck(in[l] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[l],A->cmap->n-1); 59549b5e25fSSatish Balay col = in[l]; 59649b5e25fSSatish Balay bcol = col/bs; 59749b5e25fSSatish Balay cidx = col%bs; 59849b5e25fSSatish Balay ridx = row%bs; 59949b5e25fSSatish Balay high = nrow; 60049b5e25fSSatish Balay low = 0; /* assume unsorted */ 60149b5e25fSSatish Balay while (high-low > 5) { 60249b5e25fSSatish Balay t = (low+high)/2; 60349b5e25fSSatish Balay if (rp[t] > bcol) high = t; 60449b5e25fSSatish Balay else low = t; 60549b5e25fSSatish Balay } 60649b5e25fSSatish Balay for (i=low; i<high; i++) { 60749b5e25fSSatish Balay if (rp[i] > bcol) break; 60849b5e25fSSatish Balay if (rp[i] == bcol) { 60949b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 61049b5e25fSSatish Balay goto finished; 61149b5e25fSSatish Balay } 61249b5e25fSSatish Balay } 61397e567efSBarry Smith *v++ = 0.0; 61449b5e25fSSatish Balay finished:; 61549b5e25fSSatish Balay } 61649b5e25fSSatish Balay } 61749b5e25fSSatish Balay PetscFunctionReturn(0); 61849b5e25fSSatish Balay } 61949b5e25fSSatish Balay 620dc29a518SPierre Jolivet PetscErrorCode MatPermute_SeqSBAIJ(Mat A,IS rowp,IS colp,Mat *B) 621dc29a518SPierre Jolivet { 622dc29a518SPierre Jolivet Mat C; 623dc29a518SPierre Jolivet 624dc29a518SPierre Jolivet PetscFunctionBegin; 6259566063dSJacob Faibussowitsch PetscCall(MatConvert(A,MATSEQBAIJ,MAT_INITIAL_MATRIX,&C)); 6269566063dSJacob Faibussowitsch PetscCall(MatPermute(C,rowp,colp,B)); 6279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 628dc29a518SPierre Jolivet if (rowp == colp) { 6299566063dSJacob Faibussowitsch PetscCall(MatConvert(*B,MATSEQSBAIJ,MAT_INPLACE_MATRIX,B)); 630dc29a518SPierre Jolivet } 631dc29a518SPierre Jolivet PetscFunctionReturn(0); 632dc29a518SPierre Jolivet } 63349b5e25fSSatish Balay 63413f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 63549b5e25fSSatish Balay { 6360880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 637e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 63813f74950SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 639d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 640ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 641dd6ea824SBarry Smith const PetscScalar *value = v; 642f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 6430880e062SHong Zhang 64449b5e25fSSatish Balay PetscFunctionBegin; 64526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 64626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 64726fbe8dcSKarl Rupp 6480880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 6490880e062SHong Zhang row = im[k]; 6500880e062SHong Zhang if (row < 0) continue; 6516bdcaf15SBarry Smith PetscCheck(row < a->mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index row too large %" PetscInt_FMT " max %" PetscInt_FMT,row,a->mbs-1); 6520880e062SHong Zhang rp = aj + ai[row]; 6530880e062SHong Zhang ap = aa + bs2*ai[row]; 6540880e062SHong Zhang rmax = imax[row]; 6550880e062SHong Zhang nrow = ailen[row]; 6560880e062SHong Zhang low = 0; 657818f2c47SBarry Smith high = nrow; 6580880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 6590880e062SHong Zhang if (in[l] < 0) continue; 6600880e062SHong Zhang col = in[l]; 6616bdcaf15SBarry Smith PetscCheck(col < a->nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index column too large %" PetscInt_FMT " max %" PetscInt_FMT,col,a->nbs-1); 662b98bf0e1SJed Brown if (col < row) { 66326fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular block */ 66426fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 665b98bf0e1SJed Brown } 66626fbe8dcSKarl Rupp if (roworiented) value = v + k*(stepval+bs)*bs + l*bs; 66726fbe8dcSKarl Rupp else value = v + l*(stepval+bs)*bs + k*bs; 66826fbe8dcSKarl Rupp 66926fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 67026fbe8dcSKarl Rupp else high = nrow; 67126fbe8dcSKarl Rupp 672e2ee6c50SBarry Smith lastcol = col; 6730880e062SHong Zhang while (high-low > 7) { 6740880e062SHong Zhang t = (low+high)/2; 6750880e062SHong Zhang if (rp[t] > col) high = t; 6760880e062SHong Zhang else low = t; 6770880e062SHong Zhang } 6780880e062SHong Zhang for (i=low; i<high; i++) { 6790880e062SHong Zhang if (rp[i] > col) break; 6800880e062SHong Zhang if (rp[i] == col) { 6810880e062SHong Zhang bap = ap + bs2*i; 6820880e062SHong Zhang if (roworiented) { 6830880e062SHong Zhang if (is == ADD_VALUES) { 6840880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6850880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6860880e062SHong Zhang bap[jj] += *value++; 6870880e062SHong Zhang } 6880880e062SHong Zhang } 6890880e062SHong Zhang } else { 6900880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6910880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6920880e062SHong Zhang bap[jj] = *value++; 6930880e062SHong Zhang } 6940880e062SHong Zhang } 6950880e062SHong Zhang } 6960880e062SHong Zhang } else { 6970880e062SHong Zhang if (is == ADD_VALUES) { 6980880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6990880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7000880e062SHong Zhang *bap++ += *value++; 7010880e062SHong Zhang } 7020880e062SHong Zhang } 7030880e062SHong Zhang } else { 7040880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7050880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7060880e062SHong Zhang *bap++ = *value++; 7070880e062SHong Zhang } 7080880e062SHong Zhang } 7090880e062SHong Zhang } 7100880e062SHong Zhang } 7110880e062SHong Zhang goto noinsert2; 7120880e062SHong Zhang } 7130880e062SHong Zhang } 7140880e062SHong Zhang if (nonew == 1) goto noinsert2; 71508401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 716fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 717c03d1d03SSatish Balay N = nrow++ - 1; high++; 7180880e062SHong Zhang /* shift up all the later entries in this row */ 7199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 7209566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 7219566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*i,bs2)); 7220880e062SHong Zhang rp[i] = col; 7230880e062SHong Zhang bap = ap + bs2*i; 7240880e062SHong Zhang if (roworiented) { 7250880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7260880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 7270880e062SHong Zhang bap[jj] = *value++; 7280880e062SHong Zhang } 7290880e062SHong Zhang } 7300880e062SHong Zhang } else { 7310880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7320880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7330880e062SHong Zhang *bap++ = *value++; 7340880e062SHong Zhang } 7350880e062SHong Zhang } 7360880e062SHong Zhang } 7370880e062SHong Zhang noinsert2:; 7380880e062SHong Zhang low = i; 7390880e062SHong Zhang } 7400880e062SHong Zhang ailen[row] = nrow; 7410880e062SHong Zhang } 7420880e062SHong Zhang PetscFunctionReturn(0); 74349b5e25fSSatish Balay } 74449b5e25fSSatish Balay 74564831d72SBarry Smith /* 74664831d72SBarry Smith This is not yet used 74764831d72SBarry Smith */ 7484108e4d5SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A) 7490def2e27SBarry Smith { 7500def2e27SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7510def2e27SBarry Smith const PetscInt *ai = a->i, *aj = a->j,*cols; 7520def2e27SBarry Smith PetscInt i = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts; 753ace3abfcSBarry Smith PetscBool flag; 7540def2e27SBarry Smith 7550def2e27SBarry Smith PetscFunctionBegin; 7569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&ns)); 7570def2e27SBarry Smith while (i < m) { 7580def2e27SBarry Smith nzx = ai[i+1] - ai[i]; /* Number of nonzeros */ 7590def2e27SBarry Smith /* Limits the number of elements in a node to 'a->inode.limit' */ 7600def2e27SBarry Smith for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) { 7610def2e27SBarry Smith nzy = ai[j+1] - ai[j]; 7620def2e27SBarry Smith if (nzy != (nzx - j + i)) break; 7639566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(aj + ai[i] + j - i,aj + ai[j],nzy,&flag)); 7640def2e27SBarry Smith if (!flag) break; 7650def2e27SBarry Smith } 7660def2e27SBarry Smith ns[node_count++] = blk_size; 76726fbe8dcSKarl Rupp 7680def2e27SBarry Smith i = j; 7690def2e27SBarry Smith } 7700def2e27SBarry Smith if (!a->inode.size && m && node_count > .9*m) { 7719566063dSJacob Faibussowitsch PetscCall(PetscFree(ns)); 7729566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Found %" PetscInt_FMT " nodes out of %" PetscInt_FMT " rows. Not using Inode routines\n",node_count,m)); 7730def2e27SBarry Smith } else { 7740def2e27SBarry Smith a->inode.node_count = node_count; 77526fbe8dcSKarl Rupp 7769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(node_count,&a->inode.size)); 7779566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt))); 7789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->inode.size,ns,node_count)); 7799566063dSJacob Faibussowitsch PetscCall(PetscFree(ns)); 7809566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Found %" PetscInt_FMT " nodes of %" PetscInt_FMT ". Limit used: %" PetscInt_FMT ". Using Inode routines\n",node_count,m,a->inode.limit)); 7810def2e27SBarry Smith 7820def2e27SBarry Smith /* count collections of adjacent columns in each inode */ 7830def2e27SBarry Smith row = 0; 7840def2e27SBarry Smith cnt = 0; 7850def2e27SBarry Smith for (i=0; i<node_count; i++) { 7860def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7870def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7880def2e27SBarry Smith for (j=1; j<nz; j++) { 78926fbe8dcSKarl Rupp if (cols[j] != cols[j-1]+1) cnt++; 7900def2e27SBarry Smith } 7910def2e27SBarry Smith cnt++; 7920def2e27SBarry Smith row += a->inode.size[i]; 7930def2e27SBarry Smith } 7949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*cnt,&counts)); 7950def2e27SBarry Smith cnt = 0; 7960def2e27SBarry Smith row = 0; 7970def2e27SBarry Smith for (i=0; i<node_count; i++) { 7980def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7990def2e27SBarry Smith counts[2*cnt] = cols[0]; 8000def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 8010def2e27SBarry Smith cnt2 = 1; 8020def2e27SBarry Smith for (j=1; j<nz; j++) { 8030def2e27SBarry Smith if (cols[j] != cols[j-1]+1) { 8040def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 8050def2e27SBarry Smith counts[2*cnt] = cols[j]; 8060def2e27SBarry Smith cnt2 = 1; 8070def2e27SBarry Smith } else cnt2++; 8080def2e27SBarry Smith } 8090def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 8100def2e27SBarry Smith row += a->inode.size[i]; 8110def2e27SBarry Smith } 8129566063dSJacob Faibussowitsch PetscCall(PetscIntView(2*cnt,counts,NULL)); 8130def2e27SBarry Smith } 81438702af4SBarry Smith PetscFunctionReturn(0); 81538702af4SBarry Smith } 81638702af4SBarry Smith 817dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 81849b5e25fSSatish Balay { 81949b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 8208f8f2f0dSBarry Smith PetscInt fshift = 0,i,*ai = a->i,*aj = a->j,*imax = a->imax; 821d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 82213f74950SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 82349b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 82449b5e25fSSatish Balay 82549b5e25fSSatish Balay PetscFunctionBegin; 82649b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 82749b5e25fSSatish Balay 82849b5e25fSSatish Balay if (m) rmax = ailen[0]; 82949b5e25fSSatish Balay for (i=1; i<mbs; i++) { 83049b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 83149b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 83249b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 83349b5e25fSSatish Balay if (fshift) { 834580bdb30SBarry Smith ip = aj + ai[i]; 835580bdb30SBarry Smith ap = aa + bs2*ai[i]; 83649b5e25fSSatish Balay N = ailen[i]; 8379566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ip-fshift,ip,N)); 8389566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap-bs2*fshift,ap,bs2*N)); 83949b5e25fSSatish Balay } 84049b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 84149b5e25fSSatish Balay } 84249b5e25fSSatish Balay if (mbs) { 84349b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 84449b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 84549b5e25fSSatish Balay } 84649b5e25fSSatish Balay /* reset ilen and imax for each row */ 84749b5e25fSSatish Balay for (i=0; i<mbs; i++) { 84849b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 84949b5e25fSSatish Balay } 8506c6c5352SBarry Smith a->nz = ai[mbs]; 85149b5e25fSSatish Balay 852b424e231SHong Zhang /* diagonals may have moved, reset it */ 853b424e231SHong Zhang if (a->diag) { 8549566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->diag,ai,mbs)); 85549b5e25fSSatish Balay } 856aed4548fSBarry Smith PetscCheck(!fshift || a->nounused != -1,PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 85726fbe8dcSKarl Rupp 8589566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2)); 8599566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Number of mallocs during MatSetValues is %" PetscInt_FMT "\n",a->reallocs)); 8609566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Most nonzeros blocks in any row is %" PetscInt_FMT "\n",rmax)); 86126fbe8dcSKarl Rupp 8628e58a170SBarry Smith A->info.mallocs += a->reallocs; 86349b5e25fSSatish Balay a->reallocs = 0; 86449b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 865061b2667SBarry Smith a->idiagvalid = PETSC_FALSE; 8664dcd73b1SHong Zhang a->rmax = rmax; 86738702af4SBarry Smith 86838702af4SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 86944e1c64aSLisandro Dalcin if (a->jshort && a->free_jshort) { 87017803ae8SHong Zhang /* when matrix data structure is changed, previous jshort must be replaced */ 8719566063dSJacob Faibussowitsch PetscCall(PetscFree(a->jshort)); 87217803ae8SHong Zhang } 8739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->i[A->rmap->n],&a->jshort)); 8749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short))); 87538702af4SBarry Smith for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i]; 87638702af4SBarry Smith A->ops->mult = MatMult_SeqSBAIJ_1_ushort; 87741f059aeSBarry Smith A->ops->sor = MatSOR_SeqSBAIJ_ushort; 8784da8f245SBarry Smith a->free_jshort = PETSC_TRUE; 87938702af4SBarry Smith } 88049b5e25fSSatish Balay PetscFunctionReturn(0); 88149b5e25fSSatish Balay } 88249b5e25fSSatish Balay 88349b5e25fSSatish Balay /* 88449b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 88549b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 886a5b23f4aSJose E. Roman then the resulting sizes = [3,1,1,3,1] corresponding to sets [(0,1,2),(3),(5),(6,7,8),(9)] 88749b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 88849b5e25fSSatish Balay */ 88913f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 89049b5e25fSSatish Balay { 89113f74950SBarry Smith PetscInt i,j,k,row; 892ace3abfcSBarry Smith PetscBool flg; 89349b5e25fSSatish Balay 89449b5e25fSSatish Balay PetscFunctionBegin; 89549b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 89649b5e25fSSatish Balay row = idx[i]; 897a5b23f4aSJose E. Roman if (row%bs!=0) { /* Not the beginning of a block */ 89849b5e25fSSatish Balay sizes[j] = 1; 89949b5e25fSSatish Balay i++; 90049b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 90149b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure at least 'bs' values exist for next else */ 90249b5e25fSSatish Balay i++; 9036aad120cSJose E. Roman } else { /* Beginning of the block, so check if the complete block exists */ 90449b5e25fSSatish Balay flg = PETSC_TRUE; 90549b5e25fSSatish Balay for (k=1; k<bs; k++) { 90649b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 90749b5e25fSSatish Balay flg = PETSC_FALSE; 90849b5e25fSSatish Balay break; 90949b5e25fSSatish Balay } 91049b5e25fSSatish Balay } 911abc0a331SBarry Smith if (flg) { /* No break in the bs */ 91249b5e25fSSatish Balay sizes[j] = bs; 91349b5e25fSSatish Balay i += bs; 91449b5e25fSSatish Balay } else { 91549b5e25fSSatish Balay sizes[j] = 1; 91649b5e25fSSatish Balay i++; 91749b5e25fSSatish Balay } 91849b5e25fSSatish Balay } 91949b5e25fSSatish Balay } 92049b5e25fSSatish Balay *bs_max = j; 92149b5e25fSSatish Balay PetscFunctionReturn(0); 92249b5e25fSSatish Balay } 92349b5e25fSSatish Balay 92449b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 92549b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 92649b5e25fSSatish Balay */ 92749b5e25fSSatish Balay 92813f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 92949b5e25fSSatish Balay { 93049b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 931e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 93213f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 933d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 93413f74950SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 93549b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 93649b5e25fSSatish Balay 93749b5e25fSSatish Balay PetscFunctionBegin; 93849b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 93949b5e25fSSatish Balay row = im[k]; /* row number */ 94049b5e25fSSatish Balay brow = row/bs; /* block row number */ 94149b5e25fSSatish Balay if (row < 0) continue; 9426bdcaf15SBarry Smith PetscCheck(row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->N-1); 94349b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 94449b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 94549b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 94649b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 94749b5e25fSSatish Balay low = 0; 9488509e838SStefano Zampini high = nrow; 94949b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 95049b5e25fSSatish Balay if (in[l] < 0) continue; 9516bdcaf15SBarry Smith PetscCheck(in[l] < A->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[l],A->cmap->N-1); 95249b5e25fSSatish Balay col = in[l]; 95349b5e25fSSatish Balay bcol = col/bs; /* block col number */ 95449b5e25fSSatish Balay 955941593c8SHong Zhang if (brow > bcol) { 95626fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular values */ 95726fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 958941593c8SHong Zhang } 959f4989cb3SHong Zhang 96049b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 9618549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)) { 96249b5e25fSSatish Balay /* element value a(k,l) */ 96326fbe8dcSKarl Rupp if (roworiented) value = v[l + k*n]; 96426fbe8dcSKarl Rupp else value = v[k + l*m]; 96549b5e25fSSatish Balay 96649b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 96726fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 9688509e838SStefano Zampini else high = nrow; 9698509e838SStefano Zampini 970e2ee6c50SBarry Smith lastcol = col; 97149b5e25fSSatish Balay while (high-low > 7) { 97249b5e25fSSatish Balay t = (low+high)/2; 97349b5e25fSSatish Balay if (rp[t] > bcol) high = t; 97449b5e25fSSatish Balay else low = t; 97549b5e25fSSatish Balay } 97649b5e25fSSatish Balay for (i=low; i<high; i++) { 97749b5e25fSSatish Balay if (rp[i] > bcol) break; 97849b5e25fSSatish Balay if (rp[i] == bcol) { 97949b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 98049b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 98149b5e25fSSatish Balay else *bap = value; 9828549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 9838549e402SHong Zhang if (brow == bcol && ridx < cidx) { 9848549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 9858549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 9868549e402SHong Zhang else *bap = value; 9878549e402SHong Zhang } 98849b5e25fSSatish Balay goto noinsert1; 98949b5e25fSSatish Balay } 99049b5e25fSSatish Balay } 99149b5e25fSSatish Balay 99249b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 99308401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 994fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 99549b5e25fSSatish Balay 996c03d1d03SSatish Balay N = nrow++ - 1; high++; 99749b5e25fSSatish Balay /* shift up all the later entries in this row */ 9989566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 9999566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 10009566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*i,bs2)); 100149b5e25fSSatish Balay rp[i] = bcol; 100249b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 10038509e838SStefano Zampini /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 10048509e838SStefano Zampini if (brow == bcol && ridx < cidx) { 10058509e838SStefano Zampini ap[bs2*i + bs*ridx + cidx] = value; 10068509e838SStefano Zampini } 1007e56f5c9eSBarry Smith A->nonzerostate++; 100849b5e25fSSatish Balay noinsert1:; 100949b5e25fSSatish Balay low = i; 10108549e402SHong Zhang } 101149b5e25fSSatish Balay } /* end of loop over added columns */ 101249b5e25fSSatish Balay ailen[brow] = nrow; 101349b5e25fSSatish Balay } /* end of loop over added rows */ 101449b5e25fSSatish Balay PetscFunctionReturn(0); 101549b5e25fSSatish Balay } 101649b5e25fSSatish Balay 10170481f469SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info) 101849b5e25fSSatish Balay { 10194ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 102049b5e25fSSatish Balay Mat outA; 1021ace3abfcSBarry Smith PetscBool row_identity; 102249b5e25fSSatish Balay 102349b5e25fSSatish Balay PetscFunctionBegin; 102408401ef6SPierre Jolivet PetscCheck(info->levels == 0,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc"); 10259566063dSJacob Faibussowitsch PetscCall(ISIdentity(row,&row_identity)); 102628b400f6SJacob Faibussowitsch PetscCheck(row_identity,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported"); 102708401ef6SPierre Jolivet PetscCheck(inA->rmap->bs == 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %" PetscInt_FMT " is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */ 1028c84f5b01SHong Zhang 102949b5e25fSSatish Balay outA = inA; 1030d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_ICC; 10319566063dSJacob Faibussowitsch PetscCall(PetscFree(inA->solvertype)); 10329566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&inA->solvertype)); 103349b5e25fSSatish Balay 10349566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSBAIJ(inA)); 10359566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity)); 103649b5e25fSSatish Balay 10379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)row)); 10389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 1039c84f5b01SHong Zhang a->row = row; 10409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)row)); 10419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 1042c84f5b01SHong Zhang a->col = row; 1043c84f5b01SHong Zhang 1044c84f5b01SHong Zhang /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */ 10459566063dSJacob Faibussowitsch if (a->icol) PetscCall(ISInvertPermutation(row,PETSC_DECIDE, &a->icol)); 10469566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol)); 104749b5e25fSSatish Balay 104849b5e25fSSatish Balay if (!a->solve_work) { 10499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work)); 10509566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar))); 105149b5e25fSSatish Balay } 105249b5e25fSSatish Balay 10539566063dSJacob Faibussowitsch PetscCall(MatCholeskyFactorNumeric(outA,inA,info)); 105449b5e25fSSatish Balay PetscFunctionReturn(0); 105549b5e25fSSatish Balay } 1056950f1e5bSHong Zhang 10577087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices) 105849b5e25fSSatish Balay { 1059045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ*)mat->data; 106013f74950SBarry Smith PetscInt i,nz,n; 106149b5e25fSSatish Balay 106249b5e25fSSatish Balay PetscFunctionBegin; 10636c6c5352SBarry Smith nz = baij->maxnz; 1064d0f46423SBarry Smith n = mat->cmap->n; 106526fbe8dcSKarl Rupp for (i=0; i<nz; i++) baij->j[i] = indices[i]; 106626fbe8dcSKarl Rupp 10676c6c5352SBarry Smith baij->nz = nz; 106826fbe8dcSKarl Rupp for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i]; 106926fbe8dcSKarl Rupp 10709566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 107149b5e25fSSatish Balay PetscFunctionReturn(0); 107249b5e25fSSatish Balay } 107349b5e25fSSatish Balay 107449b5e25fSSatish Balay /*@ 107519585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 107649b5e25fSSatish Balay in the matrix. 107749b5e25fSSatish Balay 107849b5e25fSSatish Balay Input Parameters: 107919585528SSatish Balay + mat - the SeqSBAIJ matrix 108049b5e25fSSatish Balay - indices - the column indices 108149b5e25fSSatish Balay 108249b5e25fSSatish Balay Level: advanced 108349b5e25fSSatish Balay 108449b5e25fSSatish Balay Notes: 108549b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 108649b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 108749b5e25fSSatish Balay of the MatSetValues() operation. 108849b5e25fSSatish Balay 108949b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 1090d1be2dadSMatthew Knepley MatCreateSeqSBAIJ(), and the columns indices MUST be sorted. 109149b5e25fSSatish Balay 1092ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 109349b5e25fSSatish Balay 1094db781477SPatrick Sanan .seealso: `MatCreateSeqSBAIJ` 109549b5e25fSSatish Balay @*/ 10967087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices) 109749b5e25fSSatish Balay { 109849b5e25fSSatish Balay PetscFunctionBegin; 10990700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1100dadcf809SJacob Faibussowitsch PetscValidIntPointer(indices,2); 1101cac4c232SBarry Smith PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices)); 110249b5e25fSSatish Balay PetscFunctionReturn(0); 110349b5e25fSSatish Balay } 110449b5e25fSSatish Balay 11053c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str) 11063c896bc6SHong Zhang { 11074c7a3774SStefano Zampini PetscBool isbaij; 11083c896bc6SHong Zhang 11093c896bc6SHong Zhang PetscFunctionBegin; 11109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B,&isbaij,MATSEQSBAIJ,MATMPISBAIJ,"")); 111128b400f6SJacob Faibussowitsch PetscCheck(isbaij,PetscObjectComm((PetscObject)B),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)B)->type_name); 11124c7a3774SStefano Zampini /* If the two matrices have the same copy implementation and nonzero pattern, use fast copy. */ 11134c7a3774SStefano Zampini if (str == SAME_NONZERO_PATTERN && A->ops->copy == B->ops->copy) { 11143c896bc6SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11153c896bc6SHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 11163c896bc6SHong Zhang 111708401ef6SPierre Jolivet PetscCheck(a->i[a->mbs] == b->i[b->mbs],PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 111808401ef6SPierre Jolivet PetscCheck(a->mbs == b->mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of rows in two matrices are different"); 111908401ef6SPierre Jolivet PetscCheck(a->bs2 == b->bs2,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Different block size"); 11209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->a,a->a,a->bs2*a->i[a->mbs])); 11219566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 11223c896bc6SHong Zhang } else { 11239566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A)); 11249566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 11259566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A)); 11263c896bc6SHong Zhang } 11273c896bc6SHong Zhang PetscFunctionReturn(0); 11283c896bc6SHong Zhang } 11293c896bc6SHong Zhang 11304994cf47SJed Brown PetscErrorCode MatSetUp_SeqSBAIJ(Mat A) 1131273d9f13SBarry Smith { 1132273d9f13SBarry Smith PetscFunctionBegin; 11339566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL)); 1134273d9f13SBarry Smith PetscFunctionReturn(0); 1135273d9f13SBarry Smith } 1136273d9f13SBarry Smith 1137cda14afcSprj- static PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1138a6ece127SHong Zhang { 1139a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11405fd66863SKarl Rupp 1141a6ece127SHong Zhang PetscFunctionBegin; 1142a6ece127SHong Zhang *array = a->a; 1143a6ece127SHong Zhang PetscFunctionReturn(0); 1144a6ece127SHong Zhang } 1145a6ece127SHong Zhang 1146cda14afcSprj- static PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1147a6ece127SHong Zhang { 1148a6ece127SHong Zhang PetscFunctionBegin; 1149cda14afcSprj- *array = NULL; 1150a6ece127SHong Zhang PetscFunctionReturn(0); 1151a6ece127SHong Zhang } 1152a6ece127SHong Zhang 115352768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz) 115452768537SHong Zhang { 1155b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 115652768537SHong Zhang Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ*)X->data; 115752768537SHong Zhang Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ*)Y->data; 115852768537SHong Zhang 115952768537SHong Zhang PetscFunctionBegin; 116052768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 11619566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz)); 116252768537SHong Zhang PetscFunctionReturn(0); 116352768537SHong Zhang } 116452768537SHong Zhang 1165f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 116642ee4b1aSHong Zhang { 116742ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data; 116831ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 1169e838b9e7SJed Brown PetscBLASInt one = 1; 117042ee4b1aSHong Zhang 117142ee4b1aSHong Zhang PetscFunctionBegin; 1172134adf20SPierre Jolivet if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) { 1173134adf20SPierre Jolivet PetscBool e = x->nz == y->nz && x->mbs == y->mbs ? PETSC_TRUE : PETSC_FALSE; 1174134adf20SPierre Jolivet if (e) { 11759566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->i,y->i,x->mbs+1,&e)); 1176134adf20SPierre Jolivet if (e) { 11779566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->j,y->j,x->i[x->mbs],&e)); 1178134adf20SPierre Jolivet if (e) str = SAME_NONZERO_PATTERN; 1179134adf20SPierre Jolivet } 1180134adf20SPierre Jolivet } 118154c59aa7SJacob Faibussowitsch if (!e) PetscCheck(str != SAME_NONZERO_PATTERN,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"MatStructure is not SAME_NONZERO_PATTERN"); 1182134adf20SPierre Jolivet } 118342ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 1184f4df32b1SMatthew Knepley PetscScalar alpha = a; 1185c5df96a5SBarry Smith PetscBLASInt bnz; 11869566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 11878b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 11889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1189ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 11909566063dSJacob Faibussowitsch PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)); 11919566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 11929566063dSJacob Faibussowitsch PetscCall(MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE)); 119342ee4b1aSHong Zhang } else { 119452768537SHong Zhang Mat B; 119552768537SHong Zhang PetscInt *nnz; 119654c59aa7SJacob Faibussowitsch PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 11979566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X)); 11989566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y)); 11999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Y->rmap->N,&nnz)); 12009566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 12019566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 12029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 12039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 12049566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)Y)->type_name)); 12059566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz)); 12069566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(B,bs,0,nnz)); 120752768537SHong Zhang 12089566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 120952768537SHong Zhang 12109566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 12119566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 12129566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X)); 12139566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y)); 121442ee4b1aSHong Zhang } 121542ee4b1aSHong Zhang PetscFunctionReturn(0); 121642ee4b1aSHong Zhang } 121742ee4b1aSHong Zhang 1218ace3abfcSBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1219efcf0fc3SBarry Smith { 1220efcf0fc3SBarry Smith PetscFunctionBegin; 1221efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1222efcf0fc3SBarry Smith PetscFunctionReturn(0); 1223efcf0fc3SBarry Smith } 1224efcf0fc3SBarry Smith 1225ace3abfcSBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool *flg) 1226efcf0fc3SBarry Smith { 1227efcf0fc3SBarry Smith PetscFunctionBegin; 1228efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1229efcf0fc3SBarry Smith PetscFunctionReturn(0); 1230efcf0fc3SBarry Smith } 1231efcf0fc3SBarry Smith 1232ace3abfcSBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1233efcf0fc3SBarry Smith { 1234efcf0fc3SBarry Smith PetscFunctionBegin; 1235efcf0fc3SBarry Smith *flg = PETSC_FALSE; 1236efcf0fc3SBarry Smith PetscFunctionReturn(0); 1237efcf0fc3SBarry Smith } 1238efcf0fc3SBarry Smith 12392726fb6dSPierre Jolivet PetscErrorCode MatConjugate_SeqSBAIJ(Mat A) 12402726fb6dSPierre Jolivet { 12412726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX) 12422726fb6dSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 12432726fb6dSPierre Jolivet PetscInt i,nz = a->bs2*a->i[a->mbs]; 12442726fb6dSPierre Jolivet MatScalar *aa = a->a; 12452726fb6dSPierre Jolivet 12462726fb6dSPierre Jolivet PetscFunctionBegin; 12472726fb6dSPierre Jolivet for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 12482726fb6dSPierre Jolivet #else 12492726fb6dSPierre Jolivet PetscFunctionBegin; 12502726fb6dSPierre Jolivet #endif 12512726fb6dSPierre Jolivet PetscFunctionReturn(0); 12522726fb6dSPierre Jolivet } 12532726fb6dSPierre Jolivet 125499cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A) 125599cafbc1SBarry Smith { 125699cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 125799cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1258dd6ea824SBarry Smith MatScalar *aa = a->a; 125999cafbc1SBarry Smith 126099cafbc1SBarry Smith PetscFunctionBegin; 126199cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 126299cafbc1SBarry Smith PetscFunctionReturn(0); 126399cafbc1SBarry Smith } 126499cafbc1SBarry Smith 126599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A) 126699cafbc1SBarry Smith { 126799cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 126899cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1269dd6ea824SBarry Smith MatScalar *aa = a->a; 127099cafbc1SBarry Smith 127199cafbc1SBarry Smith PetscFunctionBegin; 127299cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 127399cafbc1SBarry Smith PetscFunctionReturn(0); 127499cafbc1SBarry Smith } 127599cafbc1SBarry Smith 12763bededecSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 12773bededecSBarry Smith { 12783bededecSBarry Smith Mat_SeqSBAIJ *baij=(Mat_SeqSBAIJ*)A->data; 12793bededecSBarry Smith PetscInt i,j,k,count; 12803bededecSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 12813bededecSBarry Smith PetscScalar zero = 0.0; 12823bededecSBarry Smith MatScalar *aa; 12833bededecSBarry Smith const PetscScalar *xx; 12843bededecSBarry Smith PetscScalar *bb; 128556777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 12863bededecSBarry Smith 12873bededecSBarry Smith PetscFunctionBegin; 12883bededecSBarry Smith /* fix right hand side if needed */ 12893bededecSBarry Smith if (x && b) { 12909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 12919566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 129256777dd2SBarry Smith vecs = PETSC_TRUE; 12933bededecSBarry Smith } 12943bededecSBarry Smith 12953bededecSBarry Smith /* zero the columns */ 12969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(A->rmap->n,&zeroed)); 12973bededecSBarry Smith for (i=0; i<is_n; i++) { 1298aed4548fSBarry Smith PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %" PetscInt_FMT " out of range",is_idx[i]); 12993bededecSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 13003bededecSBarry Smith } 130156777dd2SBarry Smith if (vecs) { 130256777dd2SBarry Smith for (i=0; i<A->rmap->N; i++) { 130356777dd2SBarry Smith row = i/bs; 130456777dd2SBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 130556777dd2SBarry Smith for (k=0; k<bs; k++) { 130656777dd2SBarry Smith col = bs*baij->j[j] + k; 130756777dd2SBarry Smith if (col <= i) continue; 130856777dd2SBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 130926fbe8dcSKarl Rupp if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0]*xx[col]; 131026fbe8dcSKarl Rupp if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i]; 131156777dd2SBarry Smith } 131256777dd2SBarry Smith } 131356777dd2SBarry Smith } 131426fbe8dcSKarl Rupp for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]]; 131556777dd2SBarry Smith } 131656777dd2SBarry Smith 13173bededecSBarry Smith for (i=0; i<A->rmap->N; i++) { 13183bededecSBarry Smith if (!zeroed[i]) { 13193bededecSBarry Smith row = i/bs; 13203bededecSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 13213bededecSBarry Smith for (k=0; k<bs; k++) { 13223bededecSBarry Smith col = bs*baij->j[j] + k; 13233bededecSBarry Smith if (zeroed[col]) { 13243bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 13253bededecSBarry Smith aa[0] = 0.0; 13263bededecSBarry Smith } 13273bededecSBarry Smith } 13283bededecSBarry Smith } 13293bededecSBarry Smith } 13303bededecSBarry Smith } 13319566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroed)); 133256777dd2SBarry Smith if (vecs) { 13339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 13349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 133556777dd2SBarry Smith } 13363bededecSBarry Smith 13373bededecSBarry Smith /* zero the rows */ 13383bededecSBarry Smith for (i=0; i<is_n; i++) { 13393bededecSBarry Smith row = is_idx[i]; 13403bededecSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 13413bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 13423bededecSBarry Smith for (k=0; k<count; k++) { 13433bededecSBarry Smith aa[0] = zero; 13443bededecSBarry Smith aa += bs; 13453bededecSBarry Smith } 13463bededecSBarry Smith if (diag != 0.0) { 13479566063dSJacob Faibussowitsch PetscCall((*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES)); 13483bededecSBarry Smith } 13493bededecSBarry Smith } 13509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY)); 13513bededecSBarry Smith PetscFunctionReturn(0); 13523bededecSBarry Smith } 13533bededecSBarry Smith 13547d68702bSBarry Smith PetscErrorCode MatShift_SeqSBAIJ(Mat Y,PetscScalar a) 13557d68702bSBarry Smith { 13567d68702bSBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)Y->data; 13577d68702bSBarry Smith 13587d68702bSBarry Smith PetscFunctionBegin; 13596f33a894SBarry Smith if (!Y->preallocated || !aij->nz) { 13609566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL)); 13617d68702bSBarry Smith } 13629566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 13637d68702bSBarry Smith PetscFunctionReturn(0); 13647d68702bSBarry Smith } 13657d68702bSBarry Smith 136649b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 13673964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 136849b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 136949b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 137049b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 137197304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N, 1372431c96f7SBarry Smith MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */ 1373e005ede5SBarry Smith MatMultAdd_SeqSBAIJ_N, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin /* 10*/ NULL, 1378f4259b30SLisandro Dalcin NULL, 1379c078aec8SLisandro Dalcin MatCholeskyFactor_SeqSBAIJ, 138041f059aeSBarry Smith MatSOR_SeqSBAIJ, 138149b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 138297304618SKris Buschelman /* 15*/ MatGetInfo_SeqSBAIJ, 138349b5e25fSSatish Balay MatEqual_SeqSBAIJ, 138449b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 138549b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 138649b5e25fSSatish Balay MatNorm_SeqSBAIJ, 1387f4259b30SLisandro Dalcin /* 20*/ NULL, 138849b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 138949b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 139049b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 1391f4259b30SLisandro Dalcin /* 24*/ NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 13964994cf47SJed Brown /* 29*/ MatSetUp_SeqSBAIJ, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin NULL, 1401d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqSBAIJ, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405c84f5b01SHong Zhang MatICCFactor_SeqSBAIJ, 1406d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqSBAIJ, 14077dae84e0SHong Zhang MatCreateSubMatrices_SeqSBAIJ, 140849b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 140949b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 14103c896bc6SHong Zhang MatCopy_SeqSBAIJ, 1411f4259b30SLisandro Dalcin /* 44*/ NULL, 141249b5e25fSSatish Balay MatScale_SeqSBAIJ, 14137d68702bSBarry Smith MatShift_SeqSBAIJ, 1414f4259b30SLisandro Dalcin NULL, 14153bededecSBarry Smith MatZeroRowsColumns_SeqSBAIJ, 1416f4259b30SLisandro Dalcin /* 49*/ NULL, 141749b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 141849b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin /* 54*/ NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424dc29a518SPierre Jolivet MatPermute_SeqSBAIJ, 142549b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 14267dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_SeqSBAIJ, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin /* 64*/ NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqSBAIJ, 1437f4259b30SLisandro Dalcin NULL, 143828d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin /* 74*/ NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin /* 79*/ NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 144997304618SKris Buschelman MatGetInertia_SeqSBAIJ, 14505bba2384SShri Abhyankar MatLoad_SeqSBAIJ, 1451d519adbfSMatthew Knepley /* 84*/ MatIsSymmetric_SeqSBAIJ, 1452865e5f61SKris Buschelman MatIsHermitian_SeqSBAIJ, 1453efcf0fc3SBarry Smith MatIsStructurallySymmetric_SeqSBAIJ, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin NULL, 1456f4259b30SLisandro Dalcin /* 89*/ NULL, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin /* 94*/ NULL, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin NULL, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin /* 99*/ NULL, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 14692726fb6dSPierre Jolivet MatConjugate_SeqSBAIJ, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin /*104*/ NULL, 147299cafbc1SBarry Smith MatRealPart_SeqSBAIJ, 1473f5edf698SHong Zhang MatImaginaryPart_SeqSBAIJ, 1474f5edf698SHong Zhang MatGetRowUpperTriangular_SeqSBAIJ, 14752af78befSBarry Smith MatRestoreRowUpperTriangular_SeqSBAIJ, 1476f4259b30SLisandro Dalcin /*109*/ NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480547795f9SHong Zhang MatMissingDiagonal_SeqSBAIJ, 1481f4259b30SLisandro Dalcin /*114*/ NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin NULL, 1486f4259b30SLisandro Dalcin /*119*/ NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin NULL, 1491f4259b30SLisandro Dalcin /*124*/ NULL, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 1495f4259b30SLisandro Dalcin NULL, 1496f4259b30SLisandro Dalcin /*129*/ NULL, 1497f4259b30SLisandro Dalcin NULL, 1498f4259b30SLisandro Dalcin NULL, 1499f4259b30SLisandro Dalcin NULL, 1500f4259b30SLisandro Dalcin NULL, 1501f4259b30SLisandro Dalcin /*134*/ NULL, 1502f4259b30SLisandro Dalcin NULL, 1503f4259b30SLisandro Dalcin NULL, 1504f4259b30SLisandro Dalcin NULL, 1505f4259b30SLisandro Dalcin NULL, 150646533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 1507f4259b30SLisandro Dalcin NULL, 1508f4259b30SLisandro Dalcin NULL, 1509f4259b30SLisandro Dalcin NULL, 1510f4259b30SLisandro Dalcin NULL, 1511d70f29a3SPierre Jolivet /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ, 1512d70f29a3SPierre Jolivet NULL, 1513d70f29a3SPierre Jolivet NULL, 1514d70f29a3SPierre Jolivet NULL 151599cafbc1SBarry Smith }; 1516be1d678aSKris Buschelman 15177087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat) 151849b5e25fSSatish Balay { 15194afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 1520d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 152149b5e25fSSatish Balay 152249b5e25fSSatish Balay PetscFunctionBegin; 152308401ef6SPierre Jolivet PetscCheck(aij->nonew == 1,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 152449b5e25fSSatish Balay 152549b5e25fSSatish Balay /* allocate space for values if not already there */ 152649b5e25fSSatish Balay if (!aij->saved_values) { 15279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz+1,&aij->saved_values)); 152849b5e25fSSatish Balay } 152949b5e25fSSatish Balay 153049b5e25fSSatish Balay /* copy values over */ 15319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aij->saved_values,aij->a,nz)); 153249b5e25fSSatish Balay PetscFunctionReturn(0); 153349b5e25fSSatish Balay } 153449b5e25fSSatish Balay 15357087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat) 153649b5e25fSSatish Balay { 15374afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 1538d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 153949b5e25fSSatish Balay 154049b5e25fSSatish Balay PetscFunctionBegin; 154108401ef6SPierre Jolivet PetscCheck(aij->nonew == 1,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 154228b400f6SJacob Faibussowitsch PetscCheck(aij->saved_values,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 154349b5e25fSSatish Balay 154449b5e25fSSatish Balay /* copy values over */ 15459566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aij->a,aij->saved_values,nz)); 154649b5e25fSSatish Balay PetscFunctionReturn(0); 154749b5e25fSSatish Balay } 154849b5e25fSSatish Balay 1549367daffbSBarry Smith static PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 155049b5e25fSSatish Balay { 1551c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 15524dcd73b1SHong Zhang PetscInt i,mbs,nbs,bs2; 15532576faa2SJed Brown PetscBool skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE; 155449b5e25fSSatish Balay 155549b5e25fSSatish Balay PetscFunctionBegin; 15562576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 1557db4efbfdSBarry Smith 15589566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 15599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 15609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 156108401ef6SPierre Jolivet PetscCheck(B->rmap->N <= B->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"SEQSBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT,B->rmap->N,B->cmap->N); 15629566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 1563899cda47SBarry Smith 156421940c7eSstefano_zampini B->preallocated = PETSC_TRUE; 156521940c7eSstefano_zampini 1566d0f46423SBarry Smith mbs = B->rmap->N/bs; 15674dcd73b1SHong Zhang nbs = B->cmap->n/bs; 156849b5e25fSSatish Balay bs2 = bs*bs; 156949b5e25fSSatish Balay 1570aed4548fSBarry Smith PetscCheck(mbs*bs == B->rmap->N && nbs*bs == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 157149b5e25fSSatish Balay 1572ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 1573ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 1574ab93d7beSBarry Smith nz = 0; 1575ab93d7beSBarry Smith } 1576ab93d7beSBarry Smith 1577435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 157808401ef6SPierre Jolivet PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %" PetscInt_FMT,nz); 157949b5e25fSSatish Balay if (nnz) { 158049b5e25fSSatish Balay for (i=0; i<mbs; i++) { 158108401ef6SPierre Jolivet PetscCheck(nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,nnz[i]); 158208401ef6SPierre Jolivet PetscCheck(nnz[i] <= nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " block rowlength %" PetscInt_FMT,i,nnz[i],nbs); 158349b5e25fSSatish Balay } 158449b5e25fSSatish Balay } 158549b5e25fSSatish Balay 1586db4efbfdSBarry Smith B->ops->mult = MatMult_SeqSBAIJ_N; 1587db4efbfdSBarry Smith B->ops->multadd = MatMultAdd_SeqSBAIJ_N; 1588db4efbfdSBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_N; 1589db4efbfdSBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N; 159026fbe8dcSKarl Rupp 15919566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL)); 159249b5e25fSSatish Balay if (!flg) { 159349b5e25fSSatish Balay switch (bs) { 159449b5e25fSSatish Balay case 1: 159549b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 159649b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 1597431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_1; 1598431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1; 159949b5e25fSSatish Balay break; 160049b5e25fSSatish Balay case 2: 160149b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 160249b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 1603431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_2; 1604431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2; 160549b5e25fSSatish Balay break; 160649b5e25fSSatish Balay case 3: 160749b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 160849b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 1609431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_3; 1610431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3; 161149b5e25fSSatish Balay break; 161249b5e25fSSatish Balay case 4: 161349b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 161449b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 1615431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_4; 1616431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4; 161749b5e25fSSatish Balay break; 161849b5e25fSSatish Balay case 5: 161949b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 162049b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 1621431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_5; 1622431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5; 162349b5e25fSSatish Balay break; 162449b5e25fSSatish Balay case 6: 162549b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 162649b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 1627431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_6; 1628431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6; 162949b5e25fSSatish Balay break; 163049b5e25fSSatish Balay case 7: 1631de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 163249b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 1633431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_7; 1634431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7; 163549b5e25fSSatish Balay break; 163649b5e25fSSatish Balay } 163749b5e25fSSatish Balay } 163849b5e25fSSatish Balay 163949b5e25fSSatish Balay b->mbs = mbs; 16404dcd73b1SHong Zhang b->nbs = nbs; 1641ab93d7beSBarry Smith if (!skipallocation) { 16422ee49352SLisandro Dalcin if (!b->imax) { 16439566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mbs,&b->imax,mbs,&b->ilen)); 164426fbe8dcSKarl Rupp 1645c760cd28SBarry Smith b->free_imax_ilen = PETSC_TRUE; 164626fbe8dcSKarl Rupp 16479566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt))); 16482ee49352SLisandro Dalcin } 164949b5e25fSSatish Balay if (!nnz) { 1650435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 165149b5e25fSSatish Balay else if (nz <= 0) nz = 1; 16525d2a9ed1SStefano Zampini nz = PetscMin(nbs,nz); 165326fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->imax[i] = nz; 16549566063dSJacob Faibussowitsch PetscCall(PetscIntMultError(nz,mbs,&nz)); 165549b5e25fSSatish Balay } else { 1656c73702f5SBarry Smith PetscInt64 nz64 = 0; 1657c73702f5SBarry Smith for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz64 += nnz[i];} 16589566063dSJacob Faibussowitsch PetscCall(PetscIntCast(nz64,&nz)); 165949b5e25fSSatish Balay } 16602ee49352SLisandro Dalcin /* b->ilen will count nonzeros in each block row so far. */ 166126fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 16626c6c5352SBarry Smith /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 166349b5e25fSSatish Balay 166449b5e25fSSatish Balay /* allocate the matrix space */ 16659566063dSJacob Faibussowitsch PetscCall(MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i)); 16669566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i)); 16679566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)))); 16689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->a,nz*bs2)); 16699566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->j,nz)); 167026fbe8dcSKarl Rupp 167149b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 167249b5e25fSSatish Balay 167349b5e25fSSatish Balay /* pointer to beginning of each row */ 1674e60cf9a0SBarry Smith b->i[0] = 0; 167526fbe8dcSKarl Rupp for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1]; 167626fbe8dcSKarl Rupp 1677e6b907acSBarry Smith b->free_a = PETSC_TRUE; 1678e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 1679e811da20SHong Zhang } else { 1680e6b907acSBarry Smith b->free_a = PETSC_FALSE; 1681e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 1682ab93d7beSBarry Smith } 168349b5e25fSSatish Balay 168449b5e25fSSatish Balay b->bs2 = bs2; 16856c6c5352SBarry Smith b->nz = 0; 1686b32cb4a7SJed Brown b->maxnz = nz; 1687f4259b30SLisandro Dalcin b->inew = NULL; 1688f4259b30SLisandro Dalcin b->jnew = NULL; 1689f4259b30SLisandro Dalcin b->anew = NULL; 1690f4259b30SLisandro Dalcin b->a2anew = NULL; 16911a3463dfSHong Zhang b->permute = PETSC_FALSE; 1692cb7b82ddSBarry Smith 1693cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 1694cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 16959566063dSJacob Faibussowitsch if (realalloc) PetscCall(MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE)); 1696c464158bSHong Zhang PetscFunctionReturn(0); 1697c464158bSHong Zhang } 1698153ea458SHong Zhang 169938f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[]) 170038f409ebSLisandro Dalcin { 17010cd7f59aSBarry Smith PetscInt i,j,m,nz,anz, nz_max=0,*nnz; 1702f4259b30SLisandro Dalcin PetscScalar *values=NULL; 170338f409ebSLisandro Dalcin PetscBool roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented; 17040cd7f59aSBarry Smith 170538f409ebSLisandro Dalcin PetscFunctionBegin; 170608401ef6SPierre Jolivet PetscCheck(bs >= 1,PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs); 17079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 17089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 17099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 17109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 17119566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 171238f409ebSLisandro Dalcin m = B->rmap->n/bs; 171338f409ebSLisandro Dalcin 1714aed4548fSBarry Smith PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 17159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&nnz)); 171638f409ebSLisandro Dalcin for (i=0; i<m; i++) { 171738f409ebSLisandro Dalcin nz = ii[i+1] - ii[i]; 171808401ef6SPierre Jolivet PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 17190cd7f59aSBarry Smith anz = 0; 17200cd7f59aSBarry Smith for (j=0; j<nz; j++) { 17210cd7f59aSBarry Smith /* count only values on the diagonal or above */ 17220cd7f59aSBarry Smith if (jj[ii[i] + j] >= i) { 17230cd7f59aSBarry Smith anz = nz - j; 17240cd7f59aSBarry Smith break; 17250cd7f59aSBarry Smith } 17260cd7f59aSBarry Smith } 17270cd7f59aSBarry Smith nz_max = PetscMax(nz_max,anz); 17280cd7f59aSBarry Smith nnz[i] = anz; 172938f409ebSLisandro Dalcin } 17309566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(B,bs,0,nnz)); 17319566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 173238f409ebSLisandro Dalcin 173338f409ebSLisandro Dalcin values = (PetscScalar*)V; 173438f409ebSLisandro Dalcin if (!values) { 17359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*nz_max,&values)); 173638f409ebSLisandro Dalcin } 173738f409ebSLisandro Dalcin for (i=0; i<m; i++) { 173838f409ebSLisandro Dalcin PetscInt ncols = ii[i+1] - ii[i]; 173938f409ebSLisandro Dalcin const PetscInt *icols = jj + ii[i]; 174038f409ebSLisandro Dalcin if (!roworiented || bs == 1) { 174138f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 17429566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES)); 174338f409ebSLisandro Dalcin } else { 174438f409ebSLisandro Dalcin for (j=0; j<ncols; j++) { 174538f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 17469566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES)); 174738f409ebSLisandro Dalcin } 174838f409ebSLisandro Dalcin } 174938f409ebSLisandro Dalcin } 17509566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 17519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 17529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 17539566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 175438f409ebSLisandro Dalcin PetscFunctionReturn(0); 175538f409ebSLisandro Dalcin } 175638f409ebSLisandro Dalcin 1757db4efbfdSBarry Smith /* 1758db4efbfdSBarry Smith This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization 1759db4efbfdSBarry Smith */ 1760ace3abfcSBarry Smith PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural) 1761db4efbfdSBarry Smith { 1762ace3abfcSBarry Smith PetscBool flg = PETSC_FALSE; 1763db4efbfdSBarry Smith PetscInt bs = B->rmap->bs; 1764db4efbfdSBarry Smith 1765db4efbfdSBarry Smith PetscFunctionBegin; 17669566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL)); 1767db4efbfdSBarry Smith if (flg) bs = 8; 1768db4efbfdSBarry Smith 1769db4efbfdSBarry Smith if (!natural) { 1770db4efbfdSBarry Smith switch (bs) { 1771db4efbfdSBarry Smith case 1: 1772d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace; 1773db4efbfdSBarry Smith break; 1774db4efbfdSBarry Smith case 2: 1775db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 1776db4efbfdSBarry Smith break; 1777db4efbfdSBarry Smith case 3: 1778db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 1779db4efbfdSBarry Smith break; 1780db4efbfdSBarry Smith case 4: 1781db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 1782db4efbfdSBarry Smith break; 1783db4efbfdSBarry Smith case 5: 1784db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 1785db4efbfdSBarry Smith break; 1786db4efbfdSBarry Smith case 6: 1787db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 1788db4efbfdSBarry Smith break; 1789db4efbfdSBarry Smith case 7: 1790db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 1791db4efbfdSBarry Smith break; 1792db4efbfdSBarry Smith default: 1793db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N; 1794db4efbfdSBarry Smith break; 1795db4efbfdSBarry Smith } 1796db4efbfdSBarry Smith } else { 1797db4efbfdSBarry Smith switch (bs) { 1798db4efbfdSBarry Smith case 1: 1799d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace; 1800db4efbfdSBarry Smith break; 1801db4efbfdSBarry Smith case 2: 1802db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 1803db4efbfdSBarry Smith break; 1804db4efbfdSBarry Smith case 3: 1805db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 1806db4efbfdSBarry Smith break; 1807db4efbfdSBarry Smith case 4: 1808db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 1809db4efbfdSBarry Smith break; 1810db4efbfdSBarry Smith case 5: 1811db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 1812db4efbfdSBarry Smith break; 1813db4efbfdSBarry Smith case 6: 1814db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 1815db4efbfdSBarry Smith break; 1816db4efbfdSBarry Smith case 7: 1817db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 1818db4efbfdSBarry Smith break; 1819db4efbfdSBarry Smith default: 1820db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering; 1821db4efbfdSBarry Smith break; 1822db4efbfdSBarry Smith } 1823db4efbfdSBarry Smith } 1824db4efbfdSBarry Smith PetscFunctionReturn(0); 1825db4efbfdSBarry Smith } 1826db4efbfdSBarry Smith 1827cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 1828cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat,MatType,MatReuse,Mat*); 18294ac6704cSBarry Smith static PetscErrorCode MatFactorGetSolverType_petsc(Mat A,MatSolverType *type) 18304ac6704cSBarry Smith { 18314ac6704cSBarry Smith PetscFunctionBegin; 18324ac6704cSBarry Smith *type = MATSOLVERPETSC; 18334ac6704cSBarry Smith PetscFunctionReturn(0); 18344ac6704cSBarry Smith } 1835d769727bSBarry Smith 1836cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B) 18375c9eb25fSBarry Smith { 1838d0f46423SBarry Smith PetscInt n = A->rmap->n; 18395c9eb25fSBarry Smith 18405c9eb25fSBarry Smith PetscFunctionBegin; 18410e92d65fSHong Zhang #if defined(PETSC_USE_COMPLEX) 18423a8e46b6SPierre Jolivet PetscCheck(!A->hermitian || A->symmetric || (ftype != MAT_FACTOR_CHOLESKY && ftype != MAT_FACTOR_ICC),PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian CHOLESKY or ICC Factor is not supported"); 18430e92d65fSHong Zhang #endif 1844eb1ec7c1SStefano Zampini 18459566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),B)); 18469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B,n,n,n,n)); 18475c9eb25fSBarry Smith if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 18489566063dSJacob Faibussowitsch PetscCall(MatSetType(*B,MATSEQSBAIJ)); 18499566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL)); 185026fbe8dcSKarl Rupp 18517b056e98SHong Zhang (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ; 1852c6d0d4f0SHong Zhang (*B)->ops->iccfactorsymbolic = MatICCFactorSymbolic_SeqSBAIJ; 18539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGNATURAL,(char**)&(*B)->preferredordering[MAT_FACTOR_CHOLESKY])); 18549566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATORDERINGNATURAL,(char**)&(*B)->preferredordering[MAT_FACTOR_ICC])); 1855e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported"); 185600c67f3bSHong Zhang 1857d5f3da31SBarry Smith (*B)->factortype = ftype; 1858f73b0415SBarry Smith (*B)->canuseordering = PETSC_TRUE; 18599566063dSJacob Faibussowitsch PetscCall(PetscFree((*B)->solvertype)); 18609566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&(*B)->solvertype)); 18619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)*B,"MatFactorGetSolverType_C",MatFactorGetSolverType_petsc)); 18625c9eb25fSBarry Smith PetscFunctionReturn(0); 18635c9eb25fSBarry Smith } 18645c9eb25fSBarry Smith 18658397e458SBarry Smith /*@C 18668397e458SBarry Smith MatSeqSBAIJGetArray - gives access to the array where the data for a MATSEQSBAIJ matrix is stored 18678397e458SBarry Smith 18688397e458SBarry Smith Not Collective 18698397e458SBarry Smith 18708397e458SBarry Smith Input Parameter: 18718397e458SBarry Smith . mat - a MATSEQSBAIJ matrix 18728397e458SBarry Smith 18738397e458SBarry Smith Output Parameter: 18748397e458SBarry Smith . array - pointer to the data 18758397e458SBarry Smith 18768397e458SBarry Smith Level: intermediate 18778397e458SBarry Smith 1878db781477SPatrick Sanan .seealso: `MatSeqSBAIJRestoreArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()` 18798397e458SBarry Smith @*/ 18808397e458SBarry Smith PetscErrorCode MatSeqSBAIJGetArray(Mat A,PetscScalar **array) 18818397e458SBarry Smith { 18828397e458SBarry Smith PetscFunctionBegin; 1883cac4c232SBarry Smith PetscUseMethod(A,"MatSeqSBAIJGetArray_C",(Mat,PetscScalar**),(A,array)); 18848397e458SBarry Smith PetscFunctionReturn(0); 18858397e458SBarry Smith } 18868397e458SBarry Smith 18878397e458SBarry Smith /*@C 18888397e458SBarry Smith MatSeqSBAIJRestoreArray - returns access to the array where the data for a MATSEQSBAIJ matrix is stored obtained by MatSeqSBAIJGetArray() 18898397e458SBarry Smith 18908397e458SBarry Smith Not Collective 18918397e458SBarry Smith 18928397e458SBarry Smith Input Parameters: 1893a2b725a8SWilliam Gropp + mat - a MATSEQSBAIJ matrix 1894a2b725a8SWilliam Gropp - array - pointer to the data 18958397e458SBarry Smith 18968397e458SBarry Smith Level: intermediate 18978397e458SBarry Smith 1898db781477SPatrick Sanan .seealso: `MatSeqSBAIJGetArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()` 18998397e458SBarry Smith @*/ 19008397e458SBarry Smith PetscErrorCode MatSeqSBAIJRestoreArray(Mat A,PetscScalar **array) 19018397e458SBarry Smith { 19028397e458SBarry Smith PetscFunctionBegin; 1903cac4c232SBarry Smith PetscUseMethod(A,"MatSeqSBAIJRestoreArray_C",(Mat,PetscScalar**),(A,array)); 19048397e458SBarry Smith PetscFunctionReturn(0); 19058397e458SBarry Smith } 19068397e458SBarry Smith 19070bad9183SKris Buschelman /*MC 1908fafad747SKris Buschelman MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices, 19090bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 19100bad9183SKris Buschelman 1911828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 1912eb1ec7c1SStefano Zampini can call MatSetOption(Mat, MAT_HERMITIAN). 1913828413b8SBarry Smith 19140bad9183SKris Buschelman Options Database Keys: 19150bad9183SKris Buschelman . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions() 19160bad9183SKris Buschelman 191795452b02SPatrick Sanan Notes: 191895452b02SPatrick Sanan By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not 191971dad5bbSBarry Smith stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use 192071dad5bbSBarry Smith the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion. 192171dad5bbSBarry Smith 1922476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns 192371dad5bbSBarry Smith 19240bad9183SKris Buschelman Level: beginner 19250bad9183SKris Buschelman 1926db781477SPatrick Sanan .seealso: `MatCreateSeqSBAIJ()`, `MatType`, `MATMPISBAIJ` 19270bad9183SKris Buschelman M*/ 19288cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B) 1929a23d5eceSKris Buschelman { 1930a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 193113f74950SBarry Smith PetscMPIInt size; 1932ace3abfcSBarry Smith PetscBool no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE; 1933a23d5eceSKris Buschelman 1934a23d5eceSKris Buschelman PetscFunctionBegin; 19359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 193608401ef6SPierre Jolivet PetscCheck(size <= 1,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1937a23d5eceSKris Buschelman 19389566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 1939a23d5eceSKris Buschelman B->data = (void*)b; 19409566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 194126fbe8dcSKarl Rupp 1942a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1943a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1944f4259b30SLisandro Dalcin b->row = NULL; 1945f4259b30SLisandro Dalcin b->icol = NULL; 1946a23d5eceSKris Buschelman b->reallocs = 0; 1947f4259b30SLisandro Dalcin b->saved_values = NULL; 19480def2e27SBarry Smith b->inode.limit = 5; 19490def2e27SBarry Smith b->inode.max_limit = 5; 1950a23d5eceSKris Buschelman 1951a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1952a23d5eceSKris Buschelman b->nonew = 0; 1953f4259b30SLisandro Dalcin b->diag = NULL; 1954f4259b30SLisandro Dalcin b->solve_work = NULL; 1955f4259b30SLisandro Dalcin b->mult_work = NULL; 1956f4259b30SLisandro Dalcin B->spptr = NULL; 1957f2cbd3d5SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 1958a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 1959a23d5eceSKris Buschelman 1960f4259b30SLisandro Dalcin b->inew = NULL; 1961f4259b30SLisandro Dalcin b->jnew = NULL; 1962f4259b30SLisandro Dalcin b->anew = NULL; 1963f4259b30SLisandro Dalcin b->a2anew = NULL; 1964a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1965a23d5eceSKris Buschelman 196671dad5bbSBarry Smith b->ignore_ltriangular = PETSC_TRUE; 196726fbe8dcSKarl Rupp 19689566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL)); 1969941593c8SHong Zhang 1970f5edf698SHong Zhang b->getrow_utriangular = PETSC_FALSE; 197126fbe8dcSKarl Rupp 19729566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL)); 1973f5edf698SHong Zhang 19749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJGetArray_C",MatSeqSBAIJGetArray_SeqSBAIJ)); 19759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJRestoreArray_C",MatSeqSBAIJRestoreArray_SeqSBAIJ)); 19769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ)); 19779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ)); 19789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ)); 19799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ)); 19809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ)); 19819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ)); 19829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ)); 19836214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_elemental_C",MatConvert_SeqSBAIJ_Elemental)); 19856214f412SHong Zhang #endif 1986d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_scalapack_C",MatConvert_SBAIJ_ScaLAPACK)); 1988d24d4204SJose E. Roman #endif 198923ce1328SBarry Smith 199023ce1328SBarry Smith B->symmetric = PETSC_TRUE; 199123ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 199223ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 199323ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 19949899f194SHong Zhang B->symmetric_eternal = PETSC_TRUE; 1995eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX) 199613647f61SHong Zhang B->hermitian = PETSC_FALSE; 199713647f61SHong Zhang B->hermitian_set = PETSC_FALSE; 1998eb1ec7c1SStefano Zampini #else 1999eb1ec7c1SStefano Zampini B->hermitian = PETSC_TRUE; 2000eb1ec7c1SStefano Zampini B->hermitian_set = PETSC_TRUE; 2001eb1ec7c1SStefano Zampini #endif 200213647f61SHong Zhang 20039566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ)); 20040def2e27SBarry Smith 2005d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat"); 20069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL)); 200726fbe8dcSKarl Rupp if (no_unroll) { 20089566063dSJacob Faibussowitsch PetscCall(PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n")); 200926fbe8dcSKarl Rupp } 20109566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL)); 20119566063dSJacob Faibussowitsch if (no_inode) PetscCall(PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n")); 20129566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL)); 2013d0609cedSBarry Smith PetscOptionsEnd(); 2014ace3abfcSBarry Smith b->inode.use = (PetscBool)(!(no_unroll || no_inode)); 20150def2e27SBarry Smith if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit; 2016a23d5eceSKris Buschelman PetscFunctionReturn(0); 2017a23d5eceSKris Buschelman } 2018a23d5eceSKris Buschelman 2019a23d5eceSKris Buschelman /*@C 2020a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 2021a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 2022a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 2023a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 2024a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 2025a23d5eceSKris Buschelman 2026a23d5eceSKris Buschelman Collective on Mat 2027a23d5eceSKris Buschelman 2028a23d5eceSKris Buschelman Input Parameters: 20291c4f3114SJed Brown + B - the symmetric matrix 2030bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2031bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2032a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 2033a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 20340298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 2035a23d5eceSKris Buschelman 2036a23d5eceSKris Buschelman Options Database Keys: 2037a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2038a23d5eceSKris Buschelman block calculations (much slower) 2039a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use (only works if a negative bs is passed in 2040a23d5eceSKris Buschelman 2041a23d5eceSKris Buschelman Level: intermediate 2042a23d5eceSKris Buschelman 2043a23d5eceSKris Buschelman Notes: 2044a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 20450298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 2046a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 2047a23d5eceSKris Buschelman 2048aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2049aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2050aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2051aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2052aa95bbe8SBarry Smith 205349a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 205449a6f317SBarry Smith 2055db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateSBAIJ()` 2056a23d5eceSKris Buschelman @*/ 20577087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 205813f74950SBarry Smith { 2059a23d5eceSKris Buschelman PetscFunctionBegin; 20606ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20616ba663aaSJed Brown PetscValidType(B,1); 20626ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 2063cac4c232SBarry Smith PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz)); 2064a23d5eceSKris Buschelman PetscFunctionReturn(0); 2065a23d5eceSKris Buschelman } 206649b5e25fSSatish Balay 206738f409ebSLisandro Dalcin /*@C 2068664954b6SBarry Smith MatSeqSBAIJSetPreallocationCSR - Creates a sparse parallel matrix in SBAIJ format using the given nonzero structure and (optional) numerical values 206938f409ebSLisandro Dalcin 207038f409ebSLisandro Dalcin Input Parameters: 20711c4f3114SJed Brown + B - the matrix 2072eab78319SHong Zhang . bs - size of block, the blocks are ALWAYS square. 207338f409ebSLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 207438f409ebSLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 207538f409ebSLisandro Dalcin - v - optional values in the matrix 207638f409ebSLisandro Dalcin 2077664954b6SBarry Smith Level: advanced 207838f409ebSLisandro Dalcin 207938f409ebSLisandro Dalcin Notes: 208038f409ebSLisandro Dalcin The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 208138f409ebSLisandro Dalcin may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 208238f409ebSLisandro Dalcin over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 208338f409ebSLisandro Dalcin MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 208438f409ebSLisandro Dalcin block column and the second index is over columns within a block. 208538f409ebSLisandro Dalcin 208650c5228eSBarry Smith Any entries below the diagonal are ignored 20870cd7f59aSBarry Smith 20880cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries 20890cd7f59aSBarry Smith and usually the numerical values as well 2090664954b6SBarry Smith 2091db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValuesBlocked()`, `MatSeqSBAIJSetPreallocation()`, `MATSEQSBAIJ` 209238f409ebSLisandro Dalcin @*/ 209338f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 209438f409ebSLisandro Dalcin { 209538f409ebSLisandro Dalcin PetscFunctionBegin; 209638f409ebSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_CLASSID,1); 209738f409ebSLisandro Dalcin PetscValidType(B,1); 209838f409ebSLisandro Dalcin PetscValidLogicalCollectiveInt(B,bs,2); 2099cac4c232SBarry Smith PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 210038f409ebSLisandro Dalcin PetscFunctionReturn(0); 210138f409ebSLisandro Dalcin } 210238f409ebSLisandro Dalcin 2103c464158bSHong Zhang /*@C 2104c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 2105c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 2106c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 2107c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 2108c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 210949b5e25fSSatish Balay 2110d083f849SBarry Smith Collective 2111c464158bSHong Zhang 2112c464158bSHong Zhang Input Parameters: 2113c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2114bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2115bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2116c464158bSHong Zhang . m - number of rows, or number of columns 2117c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 2118744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 21190298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 2120c464158bSHong Zhang 2121c464158bSHong Zhang Output Parameter: 2122c464158bSHong Zhang . A - the symmetric matrix 2123c464158bSHong Zhang 2124c464158bSHong Zhang Options Database Keys: 2125a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 2126c464158bSHong Zhang block calculations (much slower) 2127a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 2128c464158bSHong Zhang 2129c464158bSHong Zhang Level: intermediate 2130c464158bSHong Zhang 2131175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2132f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2133175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2134175b88e8SBarry Smith 2135c464158bSHong Zhang Notes: 21366d6d819aSHong Zhang The number of rows and columns must be divisible by blocksize. 21376d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2138c464158bSHong Zhang 2139c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 21400298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 2141a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 2142c464158bSHong Zhang 214349a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 214449a6f317SBarry Smith 2145db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateSBAIJ()` 2146c464158bSHong Zhang @*/ 21477087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 2148c464158bSHong Zhang { 2149c464158bSHong Zhang PetscFunctionBegin; 21509566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 21519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,m,n)); 21529566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSBAIJ)); 21539566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A,bs,nz,(PetscInt*)nnz)); 215449b5e25fSSatish Balay PetscFunctionReturn(0); 215549b5e25fSSatish Balay } 215649b5e25fSSatish Balay 2157dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 215849b5e25fSSatish Balay { 215949b5e25fSSatish Balay Mat C; 216049b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 2161b40805acSSatish Balay PetscInt i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 216249b5e25fSSatish Balay 216349b5e25fSSatish Balay PetscFunctionBegin; 216408401ef6SPierre Jolivet PetscCheck(a->i[mbs] == nz,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 216549b5e25fSSatish Balay 2166f4259b30SLisandro Dalcin *B = NULL; 21679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&C)); 21689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n)); 21699566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,A)); 21709566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATSEQSBAIJ)); 2171692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 2172692f9cbeSHong Zhang 2173273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2174d5f3da31SBarry Smith C->factortype = A->factortype; 2175f4259b30SLisandro Dalcin c->row = NULL; 2176f4259b30SLisandro Dalcin c->icol = NULL; 2177f4259b30SLisandro Dalcin c->saved_values = NULL; 2178a9817697SBarry Smith c->keepnonzeropattern = a->keepnonzeropattern; 217949b5e25fSSatish Balay C->assembled = PETSC_TRUE; 218049b5e25fSSatish Balay 21819566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&C->rmap)); 21829566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&C->cmap)); 218349b5e25fSSatish Balay c->bs2 = a->bs2; 218449b5e25fSSatish Balay c->mbs = a->mbs; 218549b5e25fSSatish Balay c->nbs = a->nbs; 218649b5e25fSSatish Balay 2187c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2188c760cd28SBarry Smith c->imax = a->imax; 2189c760cd28SBarry Smith c->ilen = a->ilen; 2190c760cd28SBarry Smith c->free_imax_ilen = PETSC_FALSE; 2191c760cd28SBarry Smith } else { 21929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen)); 21939566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt))); 219449b5e25fSSatish Balay for (i=0; i<mbs; i++) { 219549b5e25fSSatish Balay c->imax[i] = a->imax[i]; 219649b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 219749b5e25fSSatish Balay } 2198c760cd28SBarry Smith c->free_imax_ilen = PETSC_TRUE; 2199c760cd28SBarry Smith } 220049b5e25fSSatish Balay 220149b5e25fSSatish Balay /* allocate the matrix space */ 22024da8f245SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 22039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2*nz,&c->a)); 22049566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar))); 220544e1c64aSLisandro Dalcin c->i = a->i; 220644e1c64aSLisandro Dalcin c->j = a->j; 22074da8f245SBarry Smith c->singlemalloc = PETSC_FALSE; 220844e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 22094da8f245SBarry Smith c->free_ij = PETSC_FALSE; 22104da8f245SBarry Smith c->parent = A; 22119566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)A)); 22129566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 22139566063dSJacob Faibussowitsch PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 22144da8f245SBarry Smith } else { 22159566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i)); 22169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->i,a->i,mbs+1)); 22179566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)))); 22184da8f245SBarry Smith c->singlemalloc = PETSC_TRUE; 221944e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 22204da8f245SBarry Smith c->free_ij = PETSC_TRUE; 22214da8f245SBarry Smith } 222249b5e25fSSatish Balay if (mbs > 0) { 22234da8f245SBarry Smith if (cpvalues != MAT_SHARE_NONZERO_PATTERN) { 22249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->j,a->j,nz)); 22254da8f245SBarry Smith } 222649b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 22279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->a,a->a,bs2*nz)); 222849b5e25fSSatish Balay } else { 22299566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->a,bs2*nz)); 223049b5e25fSSatish Balay } 2231a1c3900fSBarry Smith if (a->jshort) { 223244e1c64aSLisandro Dalcin /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */ 223344e1c64aSLisandro Dalcin /* if the parent matrix is reassembled, this child matrix will never notice */ 22349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&c->jshort)); 22359566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short))); 22369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->jshort,a->jshort,nz)); 223726fbe8dcSKarl Rupp 22384da8f245SBarry Smith c->free_jshort = PETSC_TRUE; 22394da8f245SBarry Smith } 2240a1c3900fSBarry Smith } 224149b5e25fSSatish Balay 224249b5e25fSSatish Balay c->roworiented = a->roworiented; 224349b5e25fSSatish Balay c->nonew = a->nonew; 224449b5e25fSSatish Balay 224549b5e25fSSatish Balay if (a->diag) { 2246c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2247c760cd28SBarry Smith c->diag = a->diag; 2248c760cd28SBarry Smith c->free_diag = PETSC_FALSE; 2249c760cd28SBarry Smith } else { 22509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mbs,&c->diag)); 22519566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt))); 225226fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 2253c760cd28SBarry Smith c->free_diag = PETSC_TRUE; 2254c760cd28SBarry Smith } 225544e1c64aSLisandro Dalcin } 22566c6c5352SBarry Smith c->nz = a->nz; 2257f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 2258f4259b30SLisandro Dalcin c->solve_work = NULL; 2259f4259b30SLisandro Dalcin c->mult_work = NULL; 226026fbe8dcSKarl Rupp 226149b5e25fSSatish Balay *B = C; 22629566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist)); 226349b5e25fSSatish Balay PetscFunctionReturn(0); 226449b5e25fSSatish Balay } 226549b5e25fSSatish Balay 2266618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */ 2267618cc2edSLisandro Dalcin #define MatLoad_SeqSBAIJ_Binary MatLoad_SeqBAIJ_Binary 2268618cc2edSLisandro Dalcin 2269618cc2edSLisandro Dalcin PetscErrorCode MatLoad_SeqSBAIJ(Mat mat,PetscViewer viewer) 22702f480046SShri Abhyankar { 22717f489da9SVaclav Hapla PetscBool isbinary; 22722f480046SShri Abhyankar 22732f480046SShri Abhyankar PetscFunctionBegin; 22749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 227528b400f6SJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 22769566063dSJacob Faibussowitsch PetscCall(MatLoad_SeqSBAIJ_Binary(mat,viewer)); 22772f480046SShri Abhyankar PetscFunctionReturn(0); 22782f480046SShri Abhyankar } 22792f480046SShri Abhyankar 2280c75a6043SHong Zhang /*@ 2281c75a6043SHong Zhang MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements 2282c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 2283c75a6043SHong Zhang 2284d083f849SBarry Smith Collective 2285c75a6043SHong Zhang 2286c75a6043SHong Zhang Input Parameters: 2287c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 2288c75a6043SHong Zhang . bs - size of block 2289c75a6043SHong Zhang . m - number of rows 2290c75a6043SHong Zhang . n - number of columns 2291483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix 2292c75a6043SHong Zhang . j - column indices 2293c75a6043SHong Zhang - a - matrix values 2294c75a6043SHong Zhang 2295c75a6043SHong Zhang Output Parameter: 2296c75a6043SHong Zhang . mat - the matrix 2297c75a6043SHong Zhang 2298dfb205c3SBarry Smith Level: advanced 2299c75a6043SHong Zhang 2300c75a6043SHong Zhang Notes: 2301c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 2302c75a6043SHong Zhang once the matrix is destroyed 2303c75a6043SHong Zhang 2304c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 2305c75a6043SHong Zhang 2306c75a6043SHong Zhang The i and j indices are 0 based 2307c75a6043SHong Zhang 2308dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1 2309dfb205c3SBarry Smith it is the regular CSR format excluding the lower triangular elements. 2310dfb205c3SBarry Smith 2311db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSBAIJ()`, `MatCreateSeqSBAIJ()` 2312c75a6043SHong Zhang 2313c75a6043SHong Zhang @*/ 2314c3c607ccSBarry Smith PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],Mat *mat) 2315c75a6043SHong Zhang { 2316c75a6043SHong Zhang PetscInt ii; 2317c75a6043SHong Zhang Mat_SeqSBAIJ *sbaij; 2318c75a6043SHong Zhang 2319c75a6043SHong Zhang PetscFunctionBegin; 232008401ef6SPierre Jolivet PetscCheck(bs == 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %" PetscInt_FMT " > 1 is not supported yet",bs); 2321aed4548fSBarry Smith PetscCheck(m == 0 || i[0] == 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2322c75a6043SHong Zhang 23239566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 23249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,m,n)); 23259566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATSEQSBAIJ)); 23269566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*mat,bs,MAT_SKIP_ALLOCATION,NULL)); 2327c75a6043SHong Zhang sbaij = (Mat_SeqSBAIJ*)(*mat)->data; 23289566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen)); 23299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt))); 2330c75a6043SHong Zhang 2331c75a6043SHong Zhang sbaij->i = i; 2332c75a6043SHong Zhang sbaij->j = j; 2333c75a6043SHong Zhang sbaij->a = a; 233426fbe8dcSKarl Rupp 2335c75a6043SHong Zhang sbaij->singlemalloc = PETSC_FALSE; 2336c75a6043SHong Zhang sbaij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 2337e6b907acSBarry Smith sbaij->free_a = PETSC_FALSE; 2338e6b907acSBarry Smith sbaij->free_ij = PETSC_FALSE; 2339ddf7884eSMatthew Knepley sbaij->free_imax_ilen = PETSC_TRUE; 2340c75a6043SHong Zhang 2341c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 2342c75a6043SHong Zhang sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii]; 23436bdcaf15SBarry Smith PetscCheck(i[ii+1] >= i[ii],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT,ii,i[ii+1] - i[ii]); 2344c75a6043SHong Zhang } 234576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 2346c75a6043SHong Zhang for (ii=0; ii<sbaij->i[m]; ii++) { 23476bdcaf15SBarry Smith PetscCheck(j[ii] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT,ii,j[ii]); 23486bdcaf15SBarry Smith PetscCheck(j[ii] < n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index too large at location = %" PetscInt_FMT " index = %" PetscInt_FMT,ii,j[ii]); 2349c75a6043SHong Zhang } 235076bd3646SJed Brown } 2351c75a6043SHong Zhang 23529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY)); 23539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY)); 2354c75a6043SHong Zhang PetscFunctionReturn(0); 2355c75a6043SHong Zhang } 2356d06b337dSHong Zhang 235759f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 235859f5e6ceSHong Zhang { 23598761c3d6SHong Zhang PetscMPIInt size; 236059f5e6ceSHong Zhang 236159f5e6ceSHong Zhang PetscFunctionBegin; 23629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 23638761c3d6SHong Zhang if (size == 1 && scall == MAT_REUSE_MATRIX) { 23649566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN)); 23658761c3d6SHong Zhang } else { 23669566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat)); 23678761c3d6SHong Zhang } 236859f5e6ceSHong Zhang PetscFunctionReturn(0); 236959f5e6ceSHong Zhang } 2370