149b5e25fSSatish Balay 249b5e25fSSatish Balay /* 3a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 449b5e25fSSatish Balay matrix storage format. 549b5e25fSSatish Balay */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 8c6db04a5SJed Brown #include <petscblaslapack.h> 949b5e25fSSatish Balay 10c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1170dcbbb9SBarry Smith #define USESHORT 12c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1370dcbbb9SBarry Smith 14ace3abfcSBarry Smith extern PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat,PetscBool); 156214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 176214f412SHong Zhang #endif 18b5b17502SBarry Smith 1949b5e25fSSatish Balay /* 2049b5e25fSSatish Balay Checks for missing diagonals 2149b5e25fSSatish Balay */ 224a2ae208SSatish Balay #undef __FUNCT__ 234a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ" 24ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool *missing,PetscInt *dd) 2549b5e25fSSatish Balay { 26045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 276849ba73SBarry Smith PetscErrorCode ierr; 287734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 2949b5e25fSSatish Balay 3049b5e25fSSatish Balay PetscFunctionBegin; 31045c9aa0SHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr); 322af78befSBarry Smith *missing = PETSC_FALSE; 337734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 34358d2f5dSShri Abhyankar *missing = PETSC_TRUE; 35358d2f5dSShri Abhyankar if (dd) *dd = 0; 36955c1f14SBarry Smith ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr); 37358d2f5dSShri Abhyankar } else { 38358d2f5dSShri Abhyankar diag = a->diag; 3949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 407734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 412af78befSBarry Smith *missing = PETSC_TRUE; 422af78befSBarry Smith if (dd) *dd = i; 432af78befSBarry Smith break; 442af78befSBarry Smith } 4549b5e25fSSatish Balay } 46358d2f5dSShri Abhyankar } 4749b5e25fSSatish Balay PetscFunctionReturn(0); 4849b5e25fSSatish Balay } 4949b5e25fSSatish Balay 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ" 52dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A) 5349b5e25fSSatish Balay { 54045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 556849ba73SBarry Smith PetscErrorCode ierr; 5648dd3d27SHong Zhang PetscInt i,j; 5749b5e25fSSatish Balay 5849b5e25fSSatish Balay PetscFunctionBegin; 5909f38230SBarry Smith if (!a->diag) { 60785e854fSJed Brown ierr = PetscMalloc1(a->mbs,&a->diag);CHKERRQ(ierr); 613bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt));CHKERRQ(ierr); 62c760cd28SBarry Smith a->free_diag = PETSC_TRUE; 6309f38230SBarry Smith } 6448dd3d27SHong Zhang for (i=0; i<a->mbs; i++) { 6548dd3d27SHong Zhang a->diag[i] = a->i[i+1]; 6648dd3d27SHong Zhang for (j=a->i[i]; j<a->i[i+1]; j++) { 6748dd3d27SHong Zhang if (a->j[j] == i) { 6848dd3d27SHong Zhang a->diag[i] = j; 6948dd3d27SHong Zhang break; 7048dd3d27SHong Zhang } 7148dd3d27SHong Zhang } 7248dd3d27SHong Zhang } 7349b5e25fSSatish Balay PetscFunctionReturn(0); 7449b5e25fSSatish Balay } 7549b5e25fSSatish Balay 764a2ae208SSatish Balay #undef __FUNCT__ 774a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ" 781a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 7949b5e25fSSatish Balay { 80a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 81d0f46423SBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs; 821a83f524SJed Brown PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 838f7157efSSatish Balay PetscErrorCode ierr; 8449b5e25fSSatish Balay 8549b5e25fSSatish Balay PetscFunctionBegin; 86d3e5a4abSHong Zhang *nn = n; 87a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 888f7157efSSatish Balay if (!blockcompressed) { 898f7157efSSatish Balay /* malloc & create the natural set of indices */ 90dcca6d9dSJed Brown ierr = PetscMalloc2((n+1)*bs,ia,nz*bs,ja);CHKERRQ(ierr); 918f7157efSSatish Balay for (i=0; i<n+1; i++) { 928f7157efSSatish Balay for (j=0; j<bs; j++) { 93c6eed6cfSHong Zhang (*ia)[i*bs+j] = a->i[i]*bs+j+oshift; 948f7157efSSatish Balay } 958f7157efSSatish Balay } 968f7157efSSatish Balay for (i=0; i<nz; i++) { 978f7157efSSatish Balay for (j=0; j<bs; j++) { 98c6eed6cfSHong Zhang (*ja)[i*bs+j] = a->j[i]*bs+j+oshift; 998f7157efSSatish Balay } 1008f7157efSSatish Balay } 1018f7157efSSatish Balay } else { /* blockcompressed */ 102a6ece127SHong Zhang if (oshift == 1) { 103a6ece127SHong Zhang /* temporarily add 1 to i and j indices */ 1046c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]++; 105a1373b80SHong Zhang for (i=0; i<n+1; i++) a->i[i]++; 1068f7157efSSatish Balay } 107a1373b80SHong Zhang *ia = a->i; *ja = a->j; 108a6ece127SHong Zhang } 10949b5e25fSSatish Balay PetscFunctionReturn(0); 11049b5e25fSSatish Balay } 11149b5e25fSSatish Balay 1124a2ae208SSatish Balay #undef __FUNCT__ 1134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ" 1141a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 11549b5e25fSSatish Balay { 116b7aaefc3SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1178f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 1188f7157efSSatish Balay PetscErrorCode ierr; 119a6ece127SHong Zhang 12049b5e25fSSatish Balay PetscFunctionBegin; 12149b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 122a6ece127SHong Zhang 1238f7157efSSatish Balay if (!blockcompressed) { 1248f7157efSSatish Balay ierr = PetscFree2(*ia,*ja);CHKERRQ(ierr); 1258f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 1266c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]--; 127a6ece127SHong Zhang for (i=0; i<n+1; i++) a->i[i]--; 128a6ece127SHong Zhang } 129a6ece127SHong Zhang PetscFunctionReturn(0); 13049b5e25fSSatish Balay } 13149b5e25fSSatish Balay 1324a2ae208SSatish Balay #undef __FUNCT__ 1334a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ" 134dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A) 13549b5e25fSSatish Balay { 13649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 137dfbe8321SBarry Smith PetscErrorCode ierr; 13849b5e25fSSatish Balay 13949b5e25fSSatish Balay PetscFunctionBegin; 140a9f03627SSatish Balay #if defined(PETSC_USE_LOG) 141d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap->N,a->nz); 142a9f03627SSatish Balay #endif 143e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1447f53bb6cSHong Zhang if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 1456bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1466bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1476bf464f9SBarry Smith ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 148c31cb41cSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 149c31cb41cSBarry Smith ierr = PetscFree(a->inode.size);CHKERRQ(ierr); 150c760cd28SBarry Smith if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 15105b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 15241f059aeSBarry Smith ierr = PetscFree(a->sor_work);CHKERRQ(ierr); 15305b42c5fSBarry Smith ierr = PetscFree(a->solves_work);CHKERRQ(ierr); 15405b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 15505b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 1564da8f245SBarry Smith if (a->free_jshort) {ierr = PetscFree(a->jshort);CHKERRQ(ierr);} 1571a3463dfSHong Zhang ierr = PetscFree(a->inew);CHKERRQ(ierr); 1586bf464f9SBarry Smith ierr = MatDestroy(&a->parent);CHKERRQ(ierr); 159bf0cc555SLisandro Dalcin ierr = PetscFree(A->data);CHKERRQ(ierr); 160901853e0SKris Buschelman 161dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 162bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 163bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 164bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr); 165bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL);CHKERRQ(ierr); 166bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL);CHKERRQ(ierr); 167bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 16838f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 169bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqsbstrm_C",NULL);CHKERRQ(ierr); 1706214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1716214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_elemental_C",NULL);CHKERRQ(ierr); 1726214f412SHong Zhang #endif 17349b5e25fSSatish Balay PetscFunctionReturn(0); 17449b5e25fSSatish Balay } 17549b5e25fSSatish Balay 1764a2ae208SSatish Balay #undef __FUNCT__ 1774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ" 178ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg) 17949b5e25fSSatish Balay { 180045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 18163ba0a88SBarry Smith PetscErrorCode ierr; 18249b5e25fSSatish Balay 18349b5e25fSSatish Balay PetscFunctionBegin; 1844d9d31abSKris Buschelman switch (op) { 1854d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 1864e0d8c25SBarry Smith a->roworiented = flg; 1874d9d31abSKris Buschelman break; 188a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 189a9817697SBarry Smith a->keepnonzeropattern = flg; 1904d9d31abSKris Buschelman break; 191512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 192512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1934d9d31abSKris Buschelman break; 1944d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1954e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1964d9d31abSKris Buschelman break; 1974d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1984e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1994d9d31abSKris Buschelman break; 20028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 20128b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 20228b2fa4aSMatthew Knepley break; 2034e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 2044d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 2054d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 206290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 2074d9d31abSKris Buschelman break; 2089a4540c5SBarry Smith case MAT_HERMITIAN: 209e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 2100bc54ff2SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 211eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian_ushort; 2120bc54ff2SBarry Smith } else if (A->cmap->bs == 1) { 213eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian; 214e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1"); 215eeffb40dSHong Zhang break; 2163d472b54SHong Zhang case MAT_SPD: 2175021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 2183d472b54SHong Zhang break; 21977e54ba9SKris Buschelman case MAT_SYMMETRIC: 22077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 2219a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 2224dcd73b1SHong Zhang /* These options are handled directly by MatSetOption() */ 223290bbb0aSBarry Smith break; 224941593c8SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 2254e0d8c25SBarry Smith a->ignore_ltriangular = flg; 226941593c8SHong Zhang break; 227941593c8SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 2284e0d8c25SBarry Smith a->ignore_ltriangular = flg; 22977e54ba9SKris Buschelman break; 230f5edf698SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 2314e0d8c25SBarry Smith a->getrow_utriangular = flg; 232f5edf698SHong Zhang break; 2334d9d31abSKris Buschelman default: 234e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 23549b5e25fSSatish Balay } 23649b5e25fSSatish Balay PetscFunctionReturn(0); 23749b5e25fSSatish Balay } 23849b5e25fSSatish Balay 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ" 24152768537SHong Zhang PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 24249b5e25fSSatish Balay { 24349b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 2446849ba73SBarry Smith PetscErrorCode ierr; 24549b5e25fSSatish Balay 24649b5e25fSSatish Balay PetscFunctionBegin; 247e32f2f54SBarry Smith if (A && !a->getrow_utriangular) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()"); 24852768537SHong Zhang 249f5edf698SHong Zhang /* Get the upper triangular part of the row */ 25052768537SHong Zhang ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr); 25149b5e25fSSatish Balay PetscFunctionReturn(0); 25249b5e25fSSatish Balay } 25349b5e25fSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 2554a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ" 25613f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 25749b5e25fSSatish Balay { 258dfbe8321SBarry Smith PetscErrorCode ierr; 25949b5e25fSSatish Balay 26049b5e25fSSatish Balay PetscFunctionBegin; 26105b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 26205b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 26349b5e25fSSatish Balay PetscFunctionReturn(0); 26449b5e25fSSatish Balay } 26549b5e25fSSatish Balay 2664a2ae208SSatish Balay #undef __FUNCT__ 267f5edf698SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_SeqSBAIJ" 268f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A) 269f5edf698SHong Zhang { 270f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 271f5edf698SHong Zhang 272f5edf698SHong Zhang PetscFunctionBegin; 273f5edf698SHong Zhang a->getrow_utriangular = PETSC_TRUE; 274f5edf698SHong Zhang PetscFunctionReturn(0); 275f5edf698SHong Zhang } 276f5edf698SHong Zhang #undef __FUNCT__ 277f5edf698SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_SeqSBAIJ" 278f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A) 279f5edf698SHong Zhang { 280f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 281f5edf698SHong Zhang 282f5edf698SHong Zhang PetscFunctionBegin; 283f5edf698SHong Zhang a->getrow_utriangular = PETSC_FALSE; 284f5edf698SHong Zhang PetscFunctionReturn(0); 285f5edf698SHong Zhang } 286f5edf698SHong Zhang 287f5edf698SHong Zhang #undef __FUNCT__ 2884a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ" 289fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B) 29049b5e25fSSatish Balay { 291dfbe8321SBarry Smith PetscErrorCode ierr; 2925fd66863SKarl Rupp 29349b5e25fSSatish Balay PetscFunctionBegin; 294815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 295999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 296fc4dec0aSBarry Smith } 2978115998fSBarry Smith PetscFunctionReturn(0); 29849b5e25fSSatish Balay } 29949b5e25fSSatish Balay 3004a2ae208SSatish Balay #undef __FUNCT__ 3014a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII" 3027da1fb6eSBarry Smith PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 30349b5e25fSSatish Balay { 30449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 305dfbe8321SBarry Smith PetscErrorCode ierr; 306d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 307f3ef73ceSBarry Smith PetscViewerFormat format; 308121deb67SSatish Balay PetscInt *diag; 30949b5e25fSSatish Balay 31049b5e25fSSatish Balay PetscFunctionBegin; 311b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 312456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 31377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 314fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 315d2507d54SMatthew Knepley Mat aij; 316ade3a672SBarry Smith const char *matname; 317ade3a672SBarry Smith 318d5f3da31SBarry Smith if (A->factortype && bs>1) { 31970d5e725SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n");CHKERRQ(ierr); 32070d5e725SHong Zhang PetscFunctionReturn(0); 32170d5e725SHong Zhang } 322c9f458caSMatthew Knepley ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 323ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr); 324ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)aij,matname);CHKERRQ(ierr); 325c9f458caSMatthew Knepley ierr = MatView(aij,viewer);CHKERRQ(ierr); 3266bf464f9SBarry Smith ierr = MatDestroy(&aij);CHKERRQ(ierr); 327fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 328d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 32949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 33049b5e25fSSatish Balay for (j=0; j<bs; j++) { 33177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 33249b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 33349b5e25fSSatish Balay for (l=0; l<bs; l++) { 33449b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 33549b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 33757622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33849b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33957622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 34057622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 34149b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 34257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 34349b5e25fSSatish Balay } 34449b5e25fSSatish Balay #else 34549b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 34657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 34749b5e25fSSatish Balay } 34849b5e25fSSatish Balay #endif 34949b5e25fSSatish Balay } 35049b5e25fSSatish Balay } 351b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 35249b5e25fSSatish Balay } 35349b5e25fSSatish Balay } 354d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 355c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 356c1490034SHong Zhang PetscFunctionReturn(0); 35749b5e25fSSatish Balay } else { 358d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 3592c990fa1SHong Zhang if (A->factortype) { /* for factored matrix */ 3602c990fa1SHong Zhang if (bs>1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet"); 3612c990fa1SHong Zhang 362121deb67SSatish Balay diag=a->diag; 363121deb67SSatish Balay for (i=0; i<a->mbs; i++) { /* for row block i */ 3642c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 3652c990fa1SHong Zhang /* diagonal entry */ 3662c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 3672c990fa1SHong Zhang if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) { 36857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3692c990fa1SHong Zhang } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) { 37057622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3712c990fa1SHong Zhang } else { 37257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3732c990fa1SHong Zhang } 3742c990fa1SHong Zhang #else 3756712e2f1SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3762c990fa1SHong Zhang #endif 3772c990fa1SHong Zhang /* off-diagonal entries */ 3782c990fa1SHong Zhang for (k=a->i[i]; k<a->i[i+1]-1; k++) { 3792c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 380ca0704adSBarry Smith if (PetscImaginaryPart(a->a[k]) > 0.0) { 38157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 382ca0704adSBarry Smith } else if (PetscImaginaryPart(a->a[k]) < 0.0) { 38357622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 3842c990fa1SHong Zhang } else { 38557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]));CHKERRQ(ierr); 3862c990fa1SHong Zhang } 3872c990fa1SHong Zhang #else 38857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[k],(double)a->a[k]);CHKERRQ(ierr); 3892c990fa1SHong Zhang #endif 3902c990fa1SHong Zhang } 3912c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 3922c990fa1SHong Zhang } 3932c990fa1SHong Zhang 3942c990fa1SHong Zhang } else { /* for non-factored matrix */ 3950c74a584SJed Brown for (i=0; i<a->mbs; i++) { /* for row block i */ 3960c74a584SJed Brown for (j=0; j<bs; j++) { /* for row bs*i + j */ 39777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 3980c74a584SJed Brown for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */ 3990c74a584SJed Brown for (l=0; l<bs; l++) { /* for column */ 40049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 40149b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 40257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 40357622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40449b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 40557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 40657622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40749b5e25fSSatish Balay } else { 40857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40949b5e25fSSatish Balay } 41049b5e25fSSatish Balay #else 41157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 41249b5e25fSSatish Balay #endif 41349b5e25fSSatish Balay } 41449b5e25fSSatish Balay } 415b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 41649b5e25fSSatish Balay } 41749b5e25fSSatish Balay } 4182c990fa1SHong Zhang } 419d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 42049b5e25fSSatish Balay } 421b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 42249b5e25fSSatish Balay PetscFunctionReturn(0); 42349b5e25fSSatish Balay } 42449b5e25fSSatish Balay 4259804daf3SBarry Smith #include <petscdraw.h> 4264a2ae208SSatish Balay #undef __FUNCT__ 4274a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom" 4286849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 42949b5e25fSSatish Balay { 43049b5e25fSSatish Balay Mat A = (Mat) Aa; 43149b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 4326849ba73SBarry Smith PetscErrorCode ierr; 433d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 43449b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 43549b5e25fSSatish Balay MatScalar *aa; 436b0a32e0cSBarry Smith PetscViewer viewer; 43749b5e25fSSatish Balay 43849b5e25fSSatish Balay PetscFunctionBegin; 43949b5e25fSSatish Balay ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 440b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 44149b5e25fSSatish Balay 44249b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 443383922c3SLisandro Dalcin 444383922c3SLisandro Dalcin ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 445383922c3SLisandro Dalcin ierr = PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");CHKERRQ(ierr); 446383922c3SLisandro Dalcin /* Blue for negative, Cyan for zero and Red for positive */ 447b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 44849b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 44949b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 450d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 45149b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 45249b5e25fSSatish Balay aa = a->a + j*bs2; 45349b5e25fSSatish Balay for (k=0; k<bs; k++) { 45449b5e25fSSatish Balay for (l=0; l<bs; l++) { 45549b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 456b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 45749b5e25fSSatish Balay } 45849b5e25fSSatish Balay } 45949b5e25fSSatish Balay } 46049b5e25fSSatish Balay } 461b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 46249b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 46349b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 464d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 46549b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 46649b5e25fSSatish Balay aa = a->a + j*bs2; 46749b5e25fSSatish Balay for (k=0; k<bs; k++) { 46849b5e25fSSatish Balay for (l=0; l<bs; l++) { 46949b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 470b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 47149b5e25fSSatish Balay } 47249b5e25fSSatish Balay } 47349b5e25fSSatish Balay } 47449b5e25fSSatish Balay } 475b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 47649b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 47749b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 478d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 47949b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 48049b5e25fSSatish Balay aa = a->a + j*bs2; 48149b5e25fSSatish Balay for (k=0; k<bs; k++) { 48249b5e25fSSatish Balay for (l=0; l<bs; l++) { 48349b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 484b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 48549b5e25fSSatish Balay } 48649b5e25fSSatish Balay } 48749b5e25fSSatish Balay } 48849b5e25fSSatish Balay } 489383922c3SLisandro Dalcin ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 49049b5e25fSSatish Balay PetscFunctionReturn(0); 49149b5e25fSSatish Balay } 49249b5e25fSSatish Balay 4934a2ae208SSatish Balay #undef __FUNCT__ 4944a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw" 4956849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 49649b5e25fSSatish Balay { 497dfbe8321SBarry Smith PetscErrorCode ierr; 49849b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 499b0a32e0cSBarry Smith PetscDraw draw; 500ace3abfcSBarry Smith PetscBool isnull; 50149b5e25fSSatish Balay 50249b5e25fSSatish Balay PetscFunctionBegin; 503b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 504383922c3SLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 505383922c3SLisandro Dalcin if (isnull) PetscFunctionReturn(0); 50649b5e25fSSatish Balay 507d0f46423SBarry Smith xr = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 50849b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 509b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 510832b7cebSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 511b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 5120298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 513832b7cebSLisandro Dalcin ierr = PetscDrawSave(draw);CHKERRQ(ierr); 51449b5e25fSSatish Balay PetscFunctionReturn(0); 51549b5e25fSSatish Balay } 51649b5e25fSSatish Balay 5174a2ae208SSatish Balay #undef __FUNCT__ 5184a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ" 519dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 52049b5e25fSSatish Balay { 521dfbe8321SBarry Smith PetscErrorCode ierr; 522ace3abfcSBarry Smith PetscBool iascii,isdraw; 52308917f38SBarry Smith FILE *file = 0; 52449b5e25fSSatish Balay 52549b5e25fSSatish Balay PetscFunctionBegin; 526251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 527251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 52832077d6dSBarry Smith if (iascii) { 52949b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 53049b5e25fSSatish Balay } else if (isdraw) { 53149b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr); 53249b5e25fSSatish Balay } else { 533a5e6ed63SBarry Smith Mat B; 534ade3a672SBarry Smith const char *matname; 535ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 536ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr); 537ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)B,matname);CHKERRQ(ierr); 538a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 5396bf464f9SBarry Smith ierr = MatDestroy(&B);CHKERRQ(ierr); 54008917f38SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 54108917f38SBarry Smith if (file) { 54208917f38SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 54308917f38SBarry Smith } 54449b5e25fSSatish Balay } 54549b5e25fSSatish Balay PetscFunctionReturn(0); 54649b5e25fSSatish Balay } 54749b5e25fSSatish Balay 54849b5e25fSSatish Balay 5494a2ae208SSatish Balay #undef __FUNCT__ 5504a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ" 55113f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 55249b5e25fSSatish Balay { 553045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 55413f74950SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 55513f74950SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 556d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 55797e567efSBarry Smith MatScalar *ap,*aa = a->a; 55849b5e25fSSatish Balay 55949b5e25fSSatish Balay PetscFunctionBegin; 56049b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 56149b5e25fSSatish Balay row = im[k]; brow = row/bs; 562e32f2f54SBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); */ 563e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 56449b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 56549b5e25fSSatish Balay nrow = ailen[brow]; 56649b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 567e32f2f54SBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); */ 568e32f2f54SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 56949b5e25fSSatish Balay col = in[l]; 57049b5e25fSSatish Balay bcol = col/bs; 57149b5e25fSSatish Balay cidx = col%bs; 57249b5e25fSSatish Balay ridx = row%bs; 57349b5e25fSSatish Balay high = nrow; 57449b5e25fSSatish Balay low = 0; /* assume unsorted */ 57549b5e25fSSatish Balay while (high-low > 5) { 57649b5e25fSSatish Balay t = (low+high)/2; 57749b5e25fSSatish Balay if (rp[t] > bcol) high = t; 57849b5e25fSSatish Balay else low = t; 57949b5e25fSSatish Balay } 58049b5e25fSSatish Balay for (i=low; i<high; i++) { 58149b5e25fSSatish Balay if (rp[i] > bcol) break; 58249b5e25fSSatish Balay if (rp[i] == bcol) { 58349b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 58449b5e25fSSatish Balay goto finished; 58549b5e25fSSatish Balay } 58649b5e25fSSatish Balay } 58797e567efSBarry Smith *v++ = 0.0; 58849b5e25fSSatish Balay finished:; 58949b5e25fSSatish Balay } 59049b5e25fSSatish Balay } 59149b5e25fSSatish Balay PetscFunctionReturn(0); 59249b5e25fSSatish Balay } 59349b5e25fSSatish Balay 59449b5e25fSSatish Balay 5954a2ae208SSatish Balay #undef __FUNCT__ 5964a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ" 59713f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 59849b5e25fSSatish Balay { 5990880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 6006849ba73SBarry Smith PetscErrorCode ierr; 601e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 60213f74950SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 603d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 604ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 605dd6ea824SBarry Smith const PetscScalar *value = v; 606f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 6070880e062SHong Zhang 60849b5e25fSSatish Balay PetscFunctionBegin; 60926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 61026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 61126fbe8dcSKarl Rupp 6120880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 6130880e062SHong Zhang row = im[k]; 6140880e062SHong Zhang if (row < 0) continue; 6152515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6162f7d4af7SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index row too large %D max %D",row,a->mbs-1); 6170880e062SHong Zhang #endif 6180880e062SHong Zhang rp = aj + ai[row]; 6190880e062SHong Zhang ap = aa + bs2*ai[row]; 6200880e062SHong Zhang rmax = imax[row]; 6210880e062SHong Zhang nrow = ailen[row]; 6220880e062SHong Zhang low = 0; 623818f2c47SBarry Smith high = nrow; 6240880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 6250880e062SHong Zhang if (in[l] < 0) continue; 6260880e062SHong Zhang col = in[l]; 6272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 6282f7d4af7SBarry Smith if (col >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block index column too large %D max %D",col,a->nbs-1); 629b1823623SSatish Balay #endif 630b98bf0e1SJed Brown if (col < row) { 63126fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular block */ 63226fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 633b98bf0e1SJed Brown } 63426fbe8dcSKarl Rupp if (roworiented) value = v + k*(stepval+bs)*bs + l*bs; 63526fbe8dcSKarl Rupp else value = v + l*(stepval+bs)*bs + k*bs; 63626fbe8dcSKarl Rupp 63726fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 63826fbe8dcSKarl Rupp else high = nrow; 63926fbe8dcSKarl Rupp 640e2ee6c50SBarry Smith lastcol = col; 6410880e062SHong Zhang while (high-low > 7) { 6420880e062SHong Zhang t = (low+high)/2; 6430880e062SHong Zhang if (rp[t] > col) high = t; 6440880e062SHong Zhang else low = t; 6450880e062SHong Zhang } 6460880e062SHong Zhang for (i=low; i<high; i++) { 6470880e062SHong Zhang if (rp[i] > col) break; 6480880e062SHong Zhang if (rp[i] == col) { 6490880e062SHong Zhang bap = ap + bs2*i; 6500880e062SHong Zhang if (roworiented) { 6510880e062SHong Zhang if (is == ADD_VALUES) { 6520880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6530880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6540880e062SHong Zhang bap[jj] += *value++; 6550880e062SHong Zhang } 6560880e062SHong Zhang } 6570880e062SHong Zhang } else { 6580880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6590880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6600880e062SHong Zhang bap[jj] = *value++; 6610880e062SHong Zhang } 6620880e062SHong Zhang } 6630880e062SHong Zhang } 6640880e062SHong Zhang } else { 6650880e062SHong Zhang if (is == ADD_VALUES) { 6660880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6670880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6680880e062SHong Zhang *bap++ += *value++; 6690880e062SHong Zhang } 6700880e062SHong Zhang } 6710880e062SHong Zhang } else { 6720880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6730880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6740880e062SHong Zhang *bap++ = *value++; 6750880e062SHong Zhang } 6760880e062SHong Zhang } 6770880e062SHong Zhang } 6780880e062SHong Zhang } 6790880e062SHong Zhang goto noinsert2; 6800880e062SHong Zhang } 6810880e062SHong Zhang } 6820880e062SHong Zhang if (nonew == 1) goto noinsert2; 6832f7d4af7SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new block index nonzero block (%D, %D) in the matrix", row, col); 684fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 685c03d1d03SSatish Balay N = nrow++ - 1; high++; 6860880e062SHong Zhang /* shift up all the later entries in this row */ 6870880e062SHong Zhang for (ii=N; ii>=i; ii--) { 6880880e062SHong Zhang rp[ii+1] = rp[ii]; 6890880e062SHong Zhang ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 6900880e062SHong Zhang } 6910880e062SHong Zhang if (N >= i) { 6920880e062SHong Zhang ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 6930880e062SHong Zhang } 6940880e062SHong Zhang rp[i] = col; 6950880e062SHong Zhang bap = ap + bs2*i; 6960880e062SHong Zhang if (roworiented) { 6970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6980880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6990880e062SHong Zhang bap[jj] = *value++; 7000880e062SHong Zhang } 7010880e062SHong Zhang } 7020880e062SHong Zhang } else { 7030880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7040880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7050880e062SHong Zhang *bap++ = *value++; 7060880e062SHong Zhang } 7070880e062SHong Zhang } 7080880e062SHong Zhang } 7090880e062SHong Zhang noinsert2:; 7100880e062SHong Zhang low = i; 7110880e062SHong Zhang } 7120880e062SHong Zhang ailen[row] = nrow; 7130880e062SHong Zhang } 7140880e062SHong Zhang PetscFunctionReturn(0); 71549b5e25fSSatish Balay } 71649b5e25fSSatish Balay 71764831d72SBarry Smith /* 71864831d72SBarry Smith This is not yet used 71964831d72SBarry Smith */ 7204a2ae208SSatish Balay #undef __FUNCT__ 7214108e4d5SBarry Smith #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode" 7224108e4d5SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A) 7230def2e27SBarry Smith { 7240def2e27SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7250def2e27SBarry Smith PetscErrorCode ierr; 7260def2e27SBarry Smith const PetscInt *ai = a->i, *aj = a->j,*cols; 7270def2e27SBarry Smith PetscInt i = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts; 728ace3abfcSBarry Smith PetscBool flag; 7290def2e27SBarry Smith 7300def2e27SBarry Smith PetscFunctionBegin; 731785e854fSJed Brown ierr = PetscMalloc1(m,&ns);CHKERRQ(ierr); 7320def2e27SBarry Smith while (i < m) { 7330def2e27SBarry Smith nzx = ai[i+1] - ai[i]; /* Number of nonzeros */ 7340def2e27SBarry Smith /* Limits the number of elements in a node to 'a->inode.limit' */ 7350def2e27SBarry Smith for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) { 7360def2e27SBarry Smith nzy = ai[j+1] - ai[j]; 7370def2e27SBarry Smith if (nzy != (nzx - j + i)) break; 7380def2e27SBarry Smith ierr = PetscMemcmp(aj + ai[i] + j - i,aj + ai[j],nzy*sizeof(PetscInt),&flag);CHKERRQ(ierr); 7390def2e27SBarry Smith if (!flag) break; 7400def2e27SBarry Smith } 7410def2e27SBarry Smith ns[node_count++] = blk_size; 74226fbe8dcSKarl Rupp 7430def2e27SBarry Smith i = j; 7440def2e27SBarry Smith } 7450def2e27SBarry Smith if (!a->inode.size && m && node_count > .9*m) { 7460def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7470def2e27SBarry Smith ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr); 7480def2e27SBarry Smith } else { 7490def2e27SBarry Smith a->inode.node_count = node_count; 75026fbe8dcSKarl Rupp 751785e854fSJed Brown ierr = PetscMalloc1(node_count,&a->inode.size);CHKERRQ(ierr); 7523bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt));CHKERRQ(ierr); 75322d28d08SBarry Smith ierr = PetscMemcpy(a->inode.size,ns,node_count*sizeof(PetscInt));CHKERRQ(ierr); 7540def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7550def2e27SBarry Smith ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr); 7560def2e27SBarry Smith 7570def2e27SBarry Smith /* count collections of adjacent columns in each inode */ 7580def2e27SBarry Smith row = 0; 7590def2e27SBarry Smith cnt = 0; 7600def2e27SBarry Smith for (i=0; i<node_count; i++) { 7610def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7620def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7630def2e27SBarry Smith for (j=1; j<nz; j++) { 76426fbe8dcSKarl Rupp if (cols[j] != cols[j-1]+1) cnt++; 7650def2e27SBarry Smith } 7660def2e27SBarry Smith cnt++; 7670def2e27SBarry Smith row += a->inode.size[i]; 7680def2e27SBarry Smith } 769785e854fSJed Brown ierr = PetscMalloc1(2*cnt,&counts);CHKERRQ(ierr); 7700def2e27SBarry Smith cnt = 0; 7710def2e27SBarry Smith row = 0; 7720def2e27SBarry Smith for (i=0; i<node_count; i++) { 7730def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7740def2e27SBarry Smith counts[2*cnt] = cols[0]; 7750def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7760def2e27SBarry Smith cnt2 = 1; 7770def2e27SBarry Smith for (j=1; j<nz; j++) { 7780def2e27SBarry Smith if (cols[j] != cols[j-1]+1) { 7790def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7800def2e27SBarry Smith counts[2*cnt] = cols[j]; 7810def2e27SBarry Smith cnt2 = 1; 7820def2e27SBarry Smith } else cnt2++; 7830def2e27SBarry Smith } 7840def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7850def2e27SBarry Smith row += a->inode.size[i]; 7860def2e27SBarry Smith } 78722d28d08SBarry Smith ierr = PetscIntView(2*cnt,counts,0);CHKERRQ(ierr); 7880def2e27SBarry Smith } 78938702af4SBarry Smith PetscFunctionReturn(0); 79038702af4SBarry Smith } 79138702af4SBarry Smith 79238702af4SBarry Smith #undef __FUNCT__ 7934a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ" 794dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 79549b5e25fSSatish Balay { 79649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7976849ba73SBarry Smith PetscErrorCode ierr; 79813f74950SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 799d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 80013f74950SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 80149b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 80249b5e25fSSatish Balay 80349b5e25fSSatish Balay PetscFunctionBegin; 80449b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 80549b5e25fSSatish Balay 80649b5e25fSSatish Balay if (m) rmax = ailen[0]; 80749b5e25fSSatish Balay for (i=1; i<mbs; i++) { 80849b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 80949b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 81049b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 81149b5e25fSSatish Balay if (fshift) { 81249b5e25fSSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 81349b5e25fSSatish Balay N = ailen[i]; 81449b5e25fSSatish Balay for (j=0; j<N; j++) { 81549b5e25fSSatish Balay ip[j-fshift] = ip[j]; 81649b5e25fSSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 81749b5e25fSSatish Balay } 81849b5e25fSSatish Balay } 81949b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 82049b5e25fSSatish Balay } 82149b5e25fSSatish Balay if (mbs) { 82249b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 82349b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 82449b5e25fSSatish Balay } 82549b5e25fSSatish Balay /* reset ilen and imax for each row */ 82649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 82749b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 82849b5e25fSSatish Balay } 8296c6c5352SBarry Smith a->nz = ai[mbs]; 83049b5e25fSSatish Balay 831b424e231SHong Zhang /* diagonals may have moved, reset it */ 832b424e231SHong Zhang if (a->diag) { 8332ed38d0bSJed Brown ierr = PetscMemcpy(a->diag,ai,mbs*sizeof(PetscInt));CHKERRQ(ierr); 83449b5e25fSSatish Balay } 83526fbe8dcSKarl Rupp if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 83626fbe8dcSKarl Rupp 837d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 838ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 839ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 84026fbe8dcSKarl Rupp 8418e58a170SBarry Smith A->info.mallocs += a->reallocs; 84249b5e25fSSatish Balay a->reallocs = 0; 84349b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 844061b2667SBarry Smith a->idiagvalid = PETSC_FALSE; 8454dcd73b1SHong Zhang a->rmax = rmax; 84638702af4SBarry Smith 84738702af4SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 84844e1c64aSLisandro Dalcin if (a->jshort && a->free_jshort) { 84917803ae8SHong Zhang /* when matrix data structure is changed, previous jshort must be replaced */ 85017803ae8SHong Zhang ierr = PetscFree(a->jshort);CHKERRQ(ierr); 85117803ae8SHong Zhang } 852785e854fSJed Brown ierr = PetscMalloc1(a->i[A->rmap->n],&a->jshort);CHKERRQ(ierr); 8533bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short));CHKERRQ(ierr); 85438702af4SBarry Smith for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i]; 85538702af4SBarry Smith A->ops->mult = MatMult_SeqSBAIJ_1_ushort; 85641f059aeSBarry Smith A->ops->sor = MatSOR_SeqSBAIJ_ushort; 8574da8f245SBarry Smith a->free_jshort = PETSC_TRUE; 85838702af4SBarry Smith } 85949b5e25fSSatish Balay PetscFunctionReturn(0); 86049b5e25fSSatish Balay } 86149b5e25fSSatish Balay 86249b5e25fSSatish Balay /* 86349b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 86449b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 86549b5e25fSSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 86649b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 86749b5e25fSSatish Balay */ 8684a2ae208SSatish Balay #undef __FUNCT__ 8694a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks" 87013f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 87149b5e25fSSatish Balay { 87213f74950SBarry Smith PetscInt i,j,k,row; 873ace3abfcSBarry Smith PetscBool flg; 87449b5e25fSSatish Balay 87549b5e25fSSatish Balay PetscFunctionBegin; 87649b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 87749b5e25fSSatish Balay row = idx[i]; 87849b5e25fSSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 87949b5e25fSSatish Balay sizes[j] = 1; 88049b5e25fSSatish Balay i++; 88149b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 88249b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 88349b5e25fSSatish Balay i++; 88449b5e25fSSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 88549b5e25fSSatish Balay flg = PETSC_TRUE; 88649b5e25fSSatish Balay for (k=1; k<bs; k++) { 88749b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 88849b5e25fSSatish Balay flg = PETSC_FALSE; 88949b5e25fSSatish Balay break; 89049b5e25fSSatish Balay } 89149b5e25fSSatish Balay } 892abc0a331SBarry Smith if (flg) { /* No break in the bs */ 89349b5e25fSSatish Balay sizes[j] = bs; 89449b5e25fSSatish Balay i += bs; 89549b5e25fSSatish Balay } else { 89649b5e25fSSatish Balay sizes[j] = 1; 89749b5e25fSSatish Balay i++; 89849b5e25fSSatish Balay } 89949b5e25fSSatish Balay } 90049b5e25fSSatish Balay } 90149b5e25fSSatish Balay *bs_max = j; 90249b5e25fSSatish Balay PetscFunctionReturn(0); 90349b5e25fSSatish Balay } 90449b5e25fSSatish Balay 90549b5e25fSSatish Balay 90649b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 90749b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 90849b5e25fSSatish Balay */ 90949b5e25fSSatish Balay 9104a2ae208SSatish Balay #undef __FUNCT__ 9114a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ" 91213f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 91349b5e25fSSatish Balay { 91449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 9156849ba73SBarry Smith PetscErrorCode ierr; 916e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 91713f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 918d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 91913f74950SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 92049b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 92149b5e25fSSatish Balay 92249b5e25fSSatish Balay PetscFunctionBegin; 92349b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 92449b5e25fSSatish Balay row = im[k]; /* row number */ 92549b5e25fSSatish Balay brow = row/bs; /* block row number */ 92649b5e25fSSatish Balay if (row < 0) continue; 9272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 928e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 92949b5e25fSSatish Balay #endif 93049b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 93149b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 93249b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 93349b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 93449b5e25fSSatish Balay low = 0; 93549b5e25fSSatish Balay 93649b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 93749b5e25fSSatish Balay if (in[l] < 0) continue; 9382515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 939e32f2f54SBarry Smith if (in[l] >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->rmap->N-1); 94049b5e25fSSatish Balay #endif 94149b5e25fSSatish Balay col = in[l]; 94249b5e25fSSatish Balay bcol = col/bs; /* block col number */ 94349b5e25fSSatish Balay 944941593c8SHong Zhang if (brow > bcol) { 94526fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular values */ 94626fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 947941593c8SHong Zhang } 948f4989cb3SHong Zhang 94949b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 9508549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)) { 95149b5e25fSSatish Balay /* element value a(k,l) */ 95226fbe8dcSKarl Rupp if (roworiented) value = v[l + k*n]; 95326fbe8dcSKarl Rupp else value = v[k + l*m]; 95449b5e25fSSatish Balay 95549b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 95626fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 95726fbe8dcSKarl Rupp high = nrow; 958e2ee6c50SBarry Smith lastcol = col; 95949b5e25fSSatish Balay while (high-low > 7) { 96049b5e25fSSatish Balay t = (low+high)/2; 96149b5e25fSSatish Balay if (rp[t] > bcol) high = t; 96249b5e25fSSatish Balay else low = t; 96349b5e25fSSatish Balay } 96449b5e25fSSatish Balay for (i=low; i<high; i++) { 96549b5e25fSSatish Balay if (rp[i] > bcol) break; 96649b5e25fSSatish Balay if (rp[i] == bcol) { 96749b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 96849b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 96949b5e25fSSatish Balay else *bap = value; 9708549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 9718549e402SHong Zhang if (brow == bcol && ridx < cidx) { 9728549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 9738549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 9748549e402SHong Zhang else *bap = value; 9758549e402SHong Zhang } 97649b5e25fSSatish Balay goto noinsert1; 97749b5e25fSSatish Balay } 97849b5e25fSSatish Balay } 97949b5e25fSSatish Balay 98049b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 981e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 982fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 98349b5e25fSSatish Balay 984c03d1d03SSatish Balay N = nrow++ - 1; high++; 98549b5e25fSSatish Balay /* shift up all the later entries in this row */ 98649b5e25fSSatish Balay for (ii=N; ii>=i; ii--) { 98749b5e25fSSatish Balay rp[ii+1] = rp[ii]; 98849b5e25fSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 98949b5e25fSSatish Balay } 99049b5e25fSSatish Balay if (N>=i) { 99149b5e25fSSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 99249b5e25fSSatish Balay } 99349b5e25fSSatish Balay rp[i] = bcol; 99449b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 995e56f5c9eSBarry Smith A->nonzerostate++; 99649b5e25fSSatish Balay noinsert1:; 99749b5e25fSSatish Balay low = i; 9988549e402SHong Zhang } 99949b5e25fSSatish Balay } /* end of loop over added columns */ 100049b5e25fSSatish Balay ailen[brow] = nrow; 100149b5e25fSSatish Balay } /* end of loop over added rows */ 100249b5e25fSSatish Balay PetscFunctionReturn(0); 100349b5e25fSSatish Balay } 100449b5e25fSSatish Balay 10054a2ae208SSatish Balay #undef __FUNCT__ 10064d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ" 10070481f469SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info) 100849b5e25fSSatish Balay { 10094ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 101049b5e25fSSatish Balay Mat outA; 1011dfbe8321SBarry Smith PetscErrorCode ierr; 1012ace3abfcSBarry Smith PetscBool row_identity; 101349b5e25fSSatish Balay 101449b5e25fSSatish Balay PetscFunctionBegin; 1015e32f2f54SBarry Smith if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc"); 1016c84f5b01SHong Zhang ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 1017e32f2f54SBarry Smith if (!row_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported"); 1018e32f2f54SBarry Smith if (inA->rmap->bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %D is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */ 1019c84f5b01SHong Zhang 102049b5e25fSSatish Balay outA = inA; 1021d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_ICC; 1022f6224b95SHong Zhang ierr = PetscFree(inA->solvertype);CHKERRQ(ierr); 1023f6224b95SHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&inA->solvertype);CHKERRQ(ierr); 102449b5e25fSSatish Balay 10251a3463dfSHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr); 1026d595f711SHong Zhang ierr = MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity);CHKERRQ(ierr); 102749b5e25fSSatish Balay 1028c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10296bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1030c84f5b01SHong Zhang a->row = row; 1031c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10326bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1033c84f5b01SHong Zhang a->col = row; 1034c84f5b01SHong Zhang 1035c84f5b01SHong Zhang /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */ 1036c84f5b01SHong Zhang if (a->icol) {ierr = ISInvertPermutation(row,PETSC_DECIDE, &a->icol);CHKERRQ(ierr);} 10373bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr); 103849b5e25fSSatish Balay 103949b5e25fSSatish Balay if (!a->solve_work) { 1040854ce69bSBarry Smith ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr); 10413bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 104249b5e25fSSatish Balay } 104349b5e25fSSatish Balay 1044719d5645SBarry Smith ierr = MatCholeskyFactorNumeric(outA,inA,info);CHKERRQ(ierr); 104549b5e25fSSatish Balay PetscFunctionReturn(0); 104649b5e25fSSatish Balay } 1047950f1e5bSHong Zhang 10484a2ae208SSatish Balay #undef __FUNCT__ 10494a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ" 10507087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices) 105149b5e25fSSatish Balay { 1052045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ*)mat->data; 105313f74950SBarry Smith PetscInt i,nz,n; 10547827cd58SJed Brown PetscErrorCode ierr; 105549b5e25fSSatish Balay 105649b5e25fSSatish Balay PetscFunctionBegin; 10576c6c5352SBarry Smith nz = baij->maxnz; 1058d0f46423SBarry Smith n = mat->cmap->n; 105926fbe8dcSKarl Rupp for (i=0; i<nz; i++) baij->j[i] = indices[i]; 106026fbe8dcSKarl Rupp 10616c6c5352SBarry Smith baij->nz = nz; 106226fbe8dcSKarl Rupp for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i]; 106326fbe8dcSKarl Rupp 10647827cd58SJed Brown ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 106549b5e25fSSatish Balay PetscFunctionReturn(0); 106649b5e25fSSatish Balay } 106749b5e25fSSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices" 107049b5e25fSSatish Balay /*@ 107119585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 107249b5e25fSSatish Balay in the matrix. 107349b5e25fSSatish Balay 107449b5e25fSSatish Balay Input Parameters: 107519585528SSatish Balay + mat - the SeqSBAIJ matrix 107649b5e25fSSatish Balay - indices - the column indices 107749b5e25fSSatish Balay 107849b5e25fSSatish Balay Level: advanced 107949b5e25fSSatish Balay 108049b5e25fSSatish Balay Notes: 108149b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 108249b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 108349b5e25fSSatish Balay of the MatSetValues() operation. 108449b5e25fSSatish Balay 108549b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 1086d1be2dadSMatthew Knepley MatCreateSeqSBAIJ(), and the columns indices MUST be sorted. 108749b5e25fSSatish Balay 1088ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 108949b5e25fSSatish Balay 1090ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ 109149b5e25fSSatish Balay @*/ 10927087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices) 109349b5e25fSSatish Balay { 10944ac538c5SBarry Smith PetscErrorCode ierr; 109549b5e25fSSatish Balay 109649b5e25fSSatish Balay PetscFunctionBegin; 10970700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 10984482741eSBarry Smith PetscValidPointer(indices,2); 10994ac538c5SBarry Smith ierr = PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr); 110049b5e25fSSatish Balay PetscFunctionReturn(0); 110149b5e25fSSatish Balay } 110249b5e25fSSatish Balay 11034a2ae208SSatish Balay #undef __FUNCT__ 11043c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqSBAIJ" 11053c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str) 11063c896bc6SHong Zhang { 11073c896bc6SHong Zhang PetscErrorCode ierr; 11083c896bc6SHong Zhang 11093c896bc6SHong Zhang PetscFunctionBegin; 11103c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 11113c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 11123c896bc6SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11133c896bc6SHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 11143c896bc6SHong Zhang 1115e7e72b3dSBarry Smith if (a->i[A->rmap->N] != b->i[B->rmap->N]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1116d0f46423SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 11173c896bc6SHong Zhang } else { 1118f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 11193c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1120f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 11213c896bc6SHong Zhang } 11223c896bc6SHong Zhang PetscFunctionReturn(0); 11233c896bc6SHong Zhang } 11243c896bc6SHong Zhang 11253c896bc6SHong Zhang #undef __FUNCT__ 11264994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqSBAIJ" 11274994cf47SJed Brown PetscErrorCode MatSetUp_SeqSBAIJ(Mat A) 1128273d9f13SBarry Smith { 1129dfbe8321SBarry Smith PetscErrorCode ierr; 1130273d9f13SBarry Smith 1131273d9f13SBarry Smith PetscFunctionBegin; 1132*367daffbSBarry Smith ierr = MatSeqSBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr); 1133273d9f13SBarry Smith PetscFunctionReturn(0); 1134273d9f13SBarry Smith } 1135273d9f13SBarry Smith 1136a6ece127SHong Zhang #undef __FUNCT__ 11378c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJGetArray_SeqSBAIJ" 11388c778c55SBarry Smith PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1139a6ece127SHong Zhang { 1140a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11415fd66863SKarl Rupp 1142a6ece127SHong Zhang PetscFunctionBegin; 1143a6ece127SHong Zhang *array = a->a; 1144a6ece127SHong Zhang PetscFunctionReturn(0); 1145a6ece127SHong Zhang } 1146a6ece127SHong Zhang 1147a6ece127SHong Zhang #undef __FUNCT__ 11488c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJRestoreArray_SeqSBAIJ" 11498c778c55SBarry Smith PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1150a6ece127SHong Zhang { 1151a6ece127SHong Zhang PetscFunctionBegin; 1152a6ece127SHong Zhang PetscFunctionReturn(0); 1153a6ece127SHong Zhang } 1154a6ece127SHong Zhang 115542ee4b1aSHong Zhang #undef __FUNCT__ 115652768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqSBAIJ" 115752768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz) 115852768537SHong Zhang { 1159b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 116052768537SHong Zhang Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ*)X->data; 116152768537SHong Zhang Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ*)Y->data; 1162b264fe52SHong Zhang PetscErrorCode ierr; 116352768537SHong Zhang 116452768537SHong Zhang PetscFunctionBegin; 116552768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 1166b264fe52SHong Zhang ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr); 116752768537SHong Zhang PetscFunctionReturn(0); 116852768537SHong Zhang } 116952768537SHong Zhang 117052768537SHong Zhang #undef __FUNCT__ 117142ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ" 1172f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 117342ee4b1aSHong Zhang { 117442ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data; 1175dfbe8321SBarry Smith PetscErrorCode ierr; 117631ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 1177e838b9e7SJed Brown PetscBLASInt one = 1; 117842ee4b1aSHong Zhang 117942ee4b1aSHong Zhang PetscFunctionBegin; 118042ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 1181f4df32b1SMatthew Knepley PetscScalar alpha = a; 1182c5df96a5SBarry Smith PetscBLASInt bnz; 1183c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 11848b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1185a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1186ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1187ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1188ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1189ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 119042ee4b1aSHong Zhang } else { 119152768537SHong Zhang Mat B; 119252768537SHong Zhang PetscInt *nnz; 119352768537SHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1194f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 119552768537SHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 119652768537SHong Zhang ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr); 119752768537SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 119852768537SHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 119952768537SHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 120052768537SHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 120152768537SHong Zhang ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr); 120252768537SHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz);CHKERRQ(ierr); 120352768537SHong Zhang ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 120452768537SHong Zhang 120552768537SHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 120652768537SHong Zhang 120728be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 120852768537SHong Zhang ierr = PetscFree(nnz);CHKERRQ(ierr); 1209f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 121052768537SHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 121142ee4b1aSHong Zhang } 121242ee4b1aSHong Zhang PetscFunctionReturn(0); 121342ee4b1aSHong Zhang } 121442ee4b1aSHong Zhang 1215efcf0fc3SBarry Smith #undef __FUNCT__ 1216efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ" 1217ace3abfcSBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1218efcf0fc3SBarry Smith { 1219efcf0fc3SBarry Smith PetscFunctionBegin; 1220efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1221efcf0fc3SBarry Smith PetscFunctionReturn(0); 1222efcf0fc3SBarry Smith } 1223efcf0fc3SBarry Smith 1224efcf0fc3SBarry Smith #undef __FUNCT__ 1225efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ" 1226ace3abfcSBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool *flg) 1227efcf0fc3SBarry Smith { 1228efcf0fc3SBarry Smith PetscFunctionBegin; 1229efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1230efcf0fc3SBarry Smith PetscFunctionReturn(0); 1231efcf0fc3SBarry Smith } 1232efcf0fc3SBarry Smith 1233efcf0fc3SBarry Smith #undef __FUNCT__ 1234efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ" 1235ace3abfcSBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1236efcf0fc3SBarry Smith { 1237efcf0fc3SBarry Smith PetscFunctionBegin; 1238efcf0fc3SBarry Smith *flg = PETSC_FALSE; 1239efcf0fc3SBarry Smith PetscFunctionReturn(0); 1240efcf0fc3SBarry Smith } 1241efcf0fc3SBarry Smith 124299cafbc1SBarry Smith #undef __FUNCT__ 124399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqSBAIJ" 124499cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A) 124599cafbc1SBarry Smith { 124699cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 124799cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1248dd6ea824SBarry Smith MatScalar *aa = a->a; 124999cafbc1SBarry Smith 125099cafbc1SBarry Smith PetscFunctionBegin; 125199cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 125299cafbc1SBarry Smith PetscFunctionReturn(0); 125399cafbc1SBarry Smith } 125499cafbc1SBarry Smith 125599cafbc1SBarry Smith #undef __FUNCT__ 125699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqSBAIJ" 125799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A) 125899cafbc1SBarry Smith { 125999cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 126099cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1261dd6ea824SBarry Smith MatScalar *aa = a->a; 126299cafbc1SBarry Smith 126399cafbc1SBarry Smith PetscFunctionBegin; 126499cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 126599cafbc1SBarry Smith PetscFunctionReturn(0); 126699cafbc1SBarry Smith } 126799cafbc1SBarry Smith 12683bededecSBarry Smith #undef __FUNCT__ 12693bededecSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqSBAIJ" 12703bededecSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 12713bededecSBarry Smith { 12723bededecSBarry Smith Mat_SeqSBAIJ *baij=(Mat_SeqSBAIJ*)A->data; 12733bededecSBarry Smith PetscErrorCode ierr; 12743bededecSBarry Smith PetscInt i,j,k,count; 12753bededecSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 12763bededecSBarry Smith PetscScalar zero = 0.0; 12773bededecSBarry Smith MatScalar *aa; 12783bededecSBarry Smith const PetscScalar *xx; 12793bededecSBarry Smith PetscScalar *bb; 128056777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 12813bededecSBarry Smith 12823bededecSBarry Smith PetscFunctionBegin; 12833bededecSBarry Smith /* fix right hand side if needed */ 12843bededecSBarry Smith if (x && b) { 12853bededecSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 12863bededecSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 128756777dd2SBarry Smith vecs = PETSC_TRUE; 12883bededecSBarry Smith } 12893bededecSBarry Smith 12903bededecSBarry Smith /* zero the columns */ 12911795a4d1SJed Brown ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr); 12923bededecSBarry Smith for (i=0; i<is_n; i++) { 12933bededecSBarry Smith if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]); 12943bededecSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 12953bededecSBarry Smith } 129656777dd2SBarry Smith if (vecs) { 129756777dd2SBarry Smith for (i=0; i<A->rmap->N; i++) { 129856777dd2SBarry Smith row = i/bs; 129956777dd2SBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 130056777dd2SBarry Smith for (k=0; k<bs; k++) { 130156777dd2SBarry Smith col = bs*baij->j[j] + k; 130256777dd2SBarry Smith if (col <= i) continue; 130356777dd2SBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 130426fbe8dcSKarl Rupp if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0]*xx[col]; 130526fbe8dcSKarl Rupp if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i]; 130656777dd2SBarry Smith } 130756777dd2SBarry Smith } 130856777dd2SBarry Smith } 130926fbe8dcSKarl Rupp for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]]; 131056777dd2SBarry Smith } 131156777dd2SBarry Smith 13123bededecSBarry Smith for (i=0; i<A->rmap->N; i++) { 13133bededecSBarry Smith if (!zeroed[i]) { 13143bededecSBarry Smith row = i/bs; 13153bededecSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 13163bededecSBarry Smith for (k=0; k<bs; k++) { 13173bededecSBarry Smith col = bs*baij->j[j] + k; 13183bededecSBarry Smith if (zeroed[col]) { 13193bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 13203bededecSBarry Smith aa[0] = 0.0; 13213bededecSBarry Smith } 13223bededecSBarry Smith } 13233bededecSBarry Smith } 13243bededecSBarry Smith } 13253bededecSBarry Smith } 13263bededecSBarry Smith ierr = PetscFree(zeroed);CHKERRQ(ierr); 132756777dd2SBarry Smith if (vecs) { 132856777dd2SBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 132956777dd2SBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 133056777dd2SBarry Smith } 13313bededecSBarry Smith 13323bededecSBarry Smith /* zero the rows */ 13333bededecSBarry Smith for (i=0; i<is_n; i++) { 13343bededecSBarry Smith row = is_idx[i]; 13353bededecSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 13363bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 13373bededecSBarry Smith for (k=0; k<count; k++) { 13383bededecSBarry Smith aa[0] = zero; 13393bededecSBarry Smith aa += bs; 13403bededecSBarry Smith } 13413bededecSBarry Smith if (diag != 0.0) { 13423bededecSBarry Smith ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 13433bededecSBarry Smith } 13443bededecSBarry Smith } 13453bededecSBarry Smith ierr = MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13463bededecSBarry Smith PetscFunctionReturn(0); 13473bededecSBarry Smith } 13483bededecSBarry Smith 13497d68702bSBarry Smith #undef __FUNCT__ 13507d68702bSBarry Smith #define __FUNCT__ "MatShift_SeqSBAIJ" 13517d68702bSBarry Smith PetscErrorCode MatShift_SeqSBAIJ(Mat Y,PetscScalar a) 13527d68702bSBarry Smith { 13537d68702bSBarry Smith PetscErrorCode ierr; 13547d68702bSBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)Y->data; 13557d68702bSBarry Smith 13567d68702bSBarry Smith PetscFunctionBegin; 13576f33a894SBarry Smith if (!Y->preallocated || !aij->nz) { 13587d68702bSBarry Smith ierr = MatSeqSBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 13597d68702bSBarry Smith } 13607d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 13617d68702bSBarry Smith PetscFunctionReturn(0); 13627d68702bSBarry Smith } 13637d68702bSBarry Smith 136449b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 13653964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 136649b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 136749b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 136849b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 136997304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N, 1370431c96f7SBarry Smith MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */ 1371e005ede5SBarry Smith MatMultAdd_SeqSBAIJ_N, 1372db4efbfdSBarry Smith 0, 137349b5e25fSSatish Balay 0, 137449b5e25fSSatish Balay 0, 137597304618SKris Buschelman /* 10*/ 0, 137649b5e25fSSatish Balay 0, 1377c078aec8SLisandro Dalcin MatCholeskyFactor_SeqSBAIJ, 137841f059aeSBarry Smith MatSOR_SeqSBAIJ, 137949b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 138097304618SKris Buschelman /* 15*/ MatGetInfo_SeqSBAIJ, 138149b5e25fSSatish Balay MatEqual_SeqSBAIJ, 138249b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 138349b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 138449b5e25fSSatish Balay MatNorm_SeqSBAIJ, 138597304618SKris Buschelman /* 20*/ 0, 138649b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 138749b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 138849b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 1389d519adbfSMatthew Knepley /* 24*/ 0, 139049b5e25fSSatish Balay 0, 139149b5e25fSSatish Balay 0, 1392db4efbfdSBarry Smith 0, 1393db4efbfdSBarry Smith 0, 13944994cf47SJed Brown /* 29*/ MatSetUp_SeqSBAIJ, 1395c464158bSHong Zhang 0, 1396db4efbfdSBarry Smith 0, 13978c778c55SBarry Smith 0, 13988c778c55SBarry Smith 0, 1399d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqSBAIJ, 1400719d5645SBarry Smith 0, 1401719d5645SBarry Smith 0, 140249b5e25fSSatish Balay 0, 1403c84f5b01SHong Zhang MatICCFactor_SeqSBAIJ, 1404d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqSBAIJ, 140549b5e25fSSatish Balay MatGetSubMatrices_SeqSBAIJ, 140649b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 140749b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 14083c896bc6SHong Zhang MatCopy_SeqSBAIJ, 1409d519adbfSMatthew Knepley /* 44*/ 0, 141049b5e25fSSatish Balay MatScale_SeqSBAIJ, 14117d68702bSBarry Smith MatShift_SeqSBAIJ, 141249b5e25fSSatish Balay 0, 14133bededecSBarry Smith MatZeroRowsColumns_SeqSBAIJ, 1414f73d5cc4SBarry Smith /* 49*/ 0, 141549b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 141649b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 141749b5e25fSSatish Balay 0, 141849b5e25fSSatish Balay 0, 1419d519adbfSMatthew Knepley /* 54*/ 0, 142049b5e25fSSatish Balay 0, 142149b5e25fSSatish Balay 0, 142249b5e25fSSatish Balay 0, 142349b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 1424d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_SeqSBAIJ, 142549b5e25fSSatish Balay 0, 142649b5e25fSSatish Balay 0, 1427357abbc8SBarry Smith 0, 1428d959ec07SHong Zhang 0, 1429d519adbfSMatthew Knepley /* 64*/ 0, 1430d959ec07SHong Zhang 0, 1431d959ec07SHong Zhang 0, 1432d959ec07SHong Zhang 0, 1433d959ec07SHong Zhang 0, 1434d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqSBAIJ, 14353e0d88b5SBarry Smith 0, 14363e0d88b5SBarry Smith 0, 14373e0d88b5SBarry Smith 0, 14383e0d88b5SBarry Smith 0, 1439d519adbfSMatthew Knepley /* 74*/ 0, 14403e0d88b5SBarry Smith 0, 14413e0d88b5SBarry Smith 0, 14423e0d88b5SBarry Smith 0, 14433e0d88b5SBarry Smith 0, 1444d519adbfSMatthew Knepley /* 79*/ 0, 14453e0d88b5SBarry Smith 0, 14463e0d88b5SBarry Smith 0, 144797304618SKris Buschelman MatGetInertia_SeqSBAIJ, 14485bba2384SShri Abhyankar MatLoad_SeqSBAIJ, 1449d519adbfSMatthew Knepley /* 84*/ MatIsSymmetric_SeqSBAIJ, 1450865e5f61SKris Buschelman MatIsHermitian_SeqSBAIJ, 1451efcf0fc3SBarry Smith MatIsStructurallySymmetric_SeqSBAIJ, 1452865e5f61SKris Buschelman 0, 1453865e5f61SKris Buschelman 0, 1454d519adbfSMatthew Knepley /* 89*/ 0, 1455865e5f61SKris Buschelman 0, 1456865e5f61SKris Buschelman 0, 1457865e5f61SKris Buschelman 0, 1458865e5f61SKris Buschelman 0, 1459d519adbfSMatthew Knepley /* 94*/ 0, 1460865e5f61SKris Buschelman 0, 1461865e5f61SKris Buschelman 0, 146299cafbc1SBarry Smith 0, 146399cafbc1SBarry Smith 0, 1464d519adbfSMatthew Knepley /* 99*/ 0, 146599cafbc1SBarry Smith 0, 146699cafbc1SBarry Smith 0, 146799cafbc1SBarry Smith 0, 146899cafbc1SBarry Smith 0, 1469d519adbfSMatthew Knepley /*104*/ 0, 147099cafbc1SBarry Smith MatRealPart_SeqSBAIJ, 1471f5edf698SHong Zhang MatImaginaryPart_SeqSBAIJ, 1472f5edf698SHong Zhang MatGetRowUpperTriangular_SeqSBAIJ, 14732af78befSBarry Smith MatRestoreRowUpperTriangular_SeqSBAIJ, 1474d519adbfSMatthew Knepley /*109*/ 0, 14752af78befSBarry Smith 0, 14762af78befSBarry Smith 0, 14772af78befSBarry Smith 0, 1478547795f9SHong Zhang MatMissingDiagonal_SeqSBAIJ, 1479547795f9SHong Zhang /*114*/ 0, 1480547795f9SHong Zhang 0, 1481547795f9SHong Zhang 0, 1482547795f9SHong Zhang 0, 1483547795f9SHong Zhang 0, 1484547795f9SHong Zhang /*119*/ 0, 1485547795f9SHong Zhang 0, 14862f480046SShri Abhyankar 0, 14873964eb88SJed Brown 0, 14883964eb88SJed Brown 0, 14893964eb88SJed Brown /*124*/ 0, 14903964eb88SJed Brown 0, 14913964eb88SJed Brown 0, 14923964eb88SJed Brown 0, 14933964eb88SJed Brown 0, 14943964eb88SJed Brown /*129*/ 0, 14953964eb88SJed Brown 0, 14963964eb88SJed Brown 0, 14973964eb88SJed Brown 0, 14983964eb88SJed Brown 0, 14993964eb88SJed Brown /*134*/ 0, 15003964eb88SJed Brown 0, 15013964eb88SJed Brown 0, 15023964eb88SJed Brown 0, 15033964eb88SJed Brown 0, 15043964eb88SJed Brown /*139*/ 0, 1505f9426fe0SMark Adams 0, 150659f5e6ceSHong Zhang 0, 150759f5e6ceSHong Zhang 0, 150859f5e6ceSHong Zhang 0, 150959f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ 151099cafbc1SBarry Smith }; 1511be1d678aSKris Buschelman 15124a2ae208SSatish Balay #undef __FUNCT__ 15134a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ" 15147087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat) 151549b5e25fSSatish Balay { 15164afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 1517d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 1518dfbe8321SBarry Smith PetscErrorCode ierr; 151949b5e25fSSatish Balay 152049b5e25fSSatish Balay PetscFunctionBegin; 1521e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 152249b5e25fSSatish Balay 152349b5e25fSSatish Balay /* allocate space for values if not already there */ 152449b5e25fSSatish Balay if (!aij->saved_values) { 1525854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr); 152649b5e25fSSatish Balay } 152749b5e25fSSatish Balay 152849b5e25fSSatish Balay /* copy values over */ 152987828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 153049b5e25fSSatish Balay PetscFunctionReturn(0); 153149b5e25fSSatish Balay } 153249b5e25fSSatish Balay 15334a2ae208SSatish Balay #undef __FUNCT__ 15344a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ" 15357087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat) 153649b5e25fSSatish Balay { 15374afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 15386849ba73SBarry Smith PetscErrorCode ierr; 1539d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 154049b5e25fSSatish Balay 154149b5e25fSSatish Balay PetscFunctionBegin; 1542e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1543e7e72b3dSBarry Smith if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 154449b5e25fSSatish Balay 154549b5e25fSSatish Balay /* copy values over */ 154687828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 154749b5e25fSSatish Balay PetscFunctionReturn(0); 154849b5e25fSSatish Balay } 154949b5e25fSSatish Balay 15504a2ae208SSatish Balay #undef __FUNCT__ 1551a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ" 1552*367daffbSBarry Smith static PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 155349b5e25fSSatish Balay { 1554c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 15556849ba73SBarry Smith PetscErrorCode ierr; 15564dcd73b1SHong Zhang PetscInt i,mbs,nbs,bs2; 15572576faa2SJed Brown PetscBool skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE; 155849b5e25fSSatish Balay 155949b5e25fSSatish Balay PetscFunctionBegin; 15602576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 1561273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1562db4efbfdSBarry Smith 156333d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 156426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 156526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1566e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1567899cda47SBarry Smith 1568d0f46423SBarry Smith mbs = B->rmap->N/bs; 15694dcd73b1SHong Zhang nbs = B->cmap->n/bs; 157049b5e25fSSatish Balay bs2 = bs*bs; 157149b5e25fSSatish Balay 15724dcd73b1SHong Zhang if (mbs*bs != B->rmap->N || nbs*bs!=B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 157349b5e25fSSatish Balay 1574ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 1575ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 1576ab93d7beSBarry Smith nz = 0; 1577ab93d7beSBarry Smith } 1578ab93d7beSBarry Smith 1579435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 1580e32f2f54SBarry Smith if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 158149b5e25fSSatish Balay if (nnz) { 158249b5e25fSSatish Balay for (i=0; i<mbs; i++) { 1583e32f2f54SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 1584de64b629SHong Zhang if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D block rowlength %D",i,nnz[i],nbs); 158549b5e25fSSatish Balay } 158649b5e25fSSatish Balay } 158749b5e25fSSatish Balay 1588db4efbfdSBarry Smith B->ops->mult = MatMult_SeqSBAIJ_N; 1589db4efbfdSBarry Smith B->ops->multadd = MatMultAdd_SeqSBAIJ_N; 1590db4efbfdSBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_N; 1591db4efbfdSBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N; 159226fbe8dcSKarl Rupp 1593c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 159449b5e25fSSatish Balay if (!flg) { 159549b5e25fSSatish Balay switch (bs) { 159649b5e25fSSatish Balay case 1: 159749b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 159849b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 1599431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_1; 1600431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1; 160149b5e25fSSatish Balay break; 160249b5e25fSSatish Balay case 2: 160349b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 160449b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 1605431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_2; 1606431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2; 160749b5e25fSSatish Balay break; 160849b5e25fSSatish Balay case 3: 160949b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 161049b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 1611431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_3; 1612431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3; 161349b5e25fSSatish Balay break; 161449b5e25fSSatish Balay case 4: 161549b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 161649b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 1617431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_4; 1618431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4; 161949b5e25fSSatish Balay break; 162049b5e25fSSatish Balay case 5: 162149b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 162249b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 1623431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_5; 1624431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5; 162549b5e25fSSatish Balay break; 162649b5e25fSSatish Balay case 6: 162749b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 162849b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 1629431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_6; 1630431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6; 163149b5e25fSSatish Balay break; 163249b5e25fSSatish Balay case 7: 1633de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 163449b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 1635431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_7; 1636431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7; 163749b5e25fSSatish Balay break; 163849b5e25fSSatish Balay } 163949b5e25fSSatish Balay } 164049b5e25fSSatish Balay 164149b5e25fSSatish Balay b->mbs = mbs; 16424dcd73b1SHong Zhang b->nbs = nbs; 1643ab93d7beSBarry Smith if (!skipallocation) { 16442ee49352SLisandro Dalcin if (!b->imax) { 1645dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr); 164626fbe8dcSKarl Rupp 1647c760cd28SBarry Smith b->free_imax_ilen = PETSC_TRUE; 164826fbe8dcSKarl Rupp 16493bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr); 16502ee49352SLisandro Dalcin } 165149b5e25fSSatish Balay if (!nnz) { 1652435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 165349b5e25fSSatish Balay else if (nz <= 0) nz = 1; 165426fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->imax[i] = nz; 1655153ea458SHong Zhang nz = nz*mbs; /* total nz */ 165649b5e25fSSatish Balay } else { 165749b5e25fSSatish Balay nz = 0; 16588cef66ccSHong Zhang for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 165949b5e25fSSatish Balay } 16602ee49352SLisandro Dalcin /* b->ilen will count nonzeros in each block row so far. */ 166126fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 16626c6c5352SBarry Smith /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 166349b5e25fSSatish Balay 166449b5e25fSSatish Balay /* allocate the matrix space */ 16652ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 1666dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr); 16673bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 16686c6c5352SBarry Smith ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 166913f74950SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 167026fbe8dcSKarl Rupp 167149b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 167249b5e25fSSatish Balay 167349b5e25fSSatish Balay /* pointer to beginning of each row */ 1674e60cf9a0SBarry Smith b->i[0] = 0; 167526fbe8dcSKarl Rupp for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1]; 167626fbe8dcSKarl Rupp 1677e6b907acSBarry Smith b->free_a = PETSC_TRUE; 1678e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 1679e811da20SHong Zhang } else { 1680e6b907acSBarry Smith b->free_a = PETSC_FALSE; 1681e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 1682ab93d7beSBarry Smith } 168349b5e25fSSatish Balay 1684d0f46423SBarry Smith B->rmap->bs = bs; 168549b5e25fSSatish Balay b->bs2 = bs2; 16866c6c5352SBarry Smith b->nz = 0; 1687b32cb4a7SJed Brown b->maxnz = nz; 1688153ea458SHong Zhang 168916cdd363SHong Zhang b->inew = 0; 169016cdd363SHong Zhang b->jnew = 0; 169116cdd363SHong Zhang b->anew = 0; 169216cdd363SHong Zhang b->a2anew = 0; 16931a3463dfSHong Zhang b->permute = PETSC_FALSE; 16942576faa2SJed Brown if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);} 1695c464158bSHong Zhang PetscFunctionReturn(0); 1696c464158bSHong Zhang } 1697153ea458SHong Zhang 169838f409ebSLisandro Dalcin #undef __FUNCT__ 169938f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ" 170038f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[]) 170138f409ebSLisandro Dalcin { 170238f409ebSLisandro Dalcin PetscInt i,j,m,nz,nz_max=0,*nnz; 170338f409ebSLisandro Dalcin PetscScalar *values=0; 170438f409ebSLisandro Dalcin PetscBool roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented; 170538f409ebSLisandro Dalcin PetscErrorCode ierr; 170638f409ebSLisandro Dalcin PetscFunctionBegin; 170738f409ebSLisandro Dalcin if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 170838f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 170938f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 171038f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 171138f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 171238f409ebSLisandro Dalcin ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 171338f409ebSLisandro Dalcin m = B->rmap->n/bs; 171438f409ebSLisandro Dalcin 171538f409ebSLisandro Dalcin if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1716854ce69bSBarry Smith ierr = PetscMalloc1(m+1,&nnz);CHKERRQ(ierr); 171738f409ebSLisandro Dalcin for (i=0; i<m; i++) { 171838f409ebSLisandro Dalcin nz = ii[i+1] - ii[i]; 171938f409ebSLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D has a negative number of columns %D",i,nz); 172038f409ebSLisandro Dalcin nz_max = PetscMax(nz_max,nz); 172138f409ebSLisandro Dalcin nnz[i] = nz; 172238f409ebSLisandro Dalcin } 172338f409ebSLisandro Dalcin ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 172438f409ebSLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 172538f409ebSLisandro Dalcin 172638f409ebSLisandro Dalcin values = (PetscScalar*)V; 172738f409ebSLisandro Dalcin if (!values) { 17281795a4d1SJed Brown ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 172938f409ebSLisandro Dalcin } 173038f409ebSLisandro Dalcin for (i=0; i<m; i++) { 173138f409ebSLisandro Dalcin PetscInt ncols = ii[i+1] - ii[i]; 173238f409ebSLisandro Dalcin const PetscInt *icols = jj + ii[i]; 173338f409ebSLisandro Dalcin if (!roworiented || bs == 1) { 173438f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 173538f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 173638f409ebSLisandro Dalcin } else { 173738f409ebSLisandro Dalcin for (j=0; j<ncols; j++) { 173838f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 173938f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 174038f409ebSLisandro Dalcin } 174138f409ebSLisandro Dalcin } 174238f409ebSLisandro Dalcin } 174338f409ebSLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 174438f409ebSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 174538f409ebSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 174638f409ebSLisandro Dalcin ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 174738f409ebSLisandro Dalcin PetscFunctionReturn(0); 174838f409ebSLisandro Dalcin } 174938f409ebSLisandro Dalcin 1750db4efbfdSBarry Smith /* 1751db4efbfdSBarry Smith This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization 1752db4efbfdSBarry Smith */ 17538b1456e3SHong Zhang #undef __FUNCT__ 1754d595f711SHong Zhang #define __FUNCT__ "MatSeqSBAIJSetNumericFactorization_inplace" 1755ace3abfcSBarry Smith PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural) 1756db4efbfdSBarry Smith { 1757db4efbfdSBarry Smith PetscErrorCode ierr; 1758ace3abfcSBarry Smith PetscBool flg = PETSC_FALSE; 1759db4efbfdSBarry Smith PetscInt bs = B->rmap->bs; 1760db4efbfdSBarry Smith 1761db4efbfdSBarry Smith PetscFunctionBegin; 1762c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 1763db4efbfdSBarry Smith if (flg) bs = 8; 1764db4efbfdSBarry Smith 1765db4efbfdSBarry Smith if (!natural) { 1766db4efbfdSBarry Smith switch (bs) { 1767db4efbfdSBarry Smith case 1: 1768d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace; 1769db4efbfdSBarry Smith break; 1770db4efbfdSBarry Smith case 2: 1771db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 1772db4efbfdSBarry Smith break; 1773db4efbfdSBarry Smith case 3: 1774db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 1775db4efbfdSBarry Smith break; 1776db4efbfdSBarry Smith case 4: 1777db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 1778db4efbfdSBarry Smith break; 1779db4efbfdSBarry Smith case 5: 1780db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 1781db4efbfdSBarry Smith break; 1782db4efbfdSBarry Smith case 6: 1783db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 1784db4efbfdSBarry Smith break; 1785db4efbfdSBarry Smith case 7: 1786db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 1787db4efbfdSBarry Smith break; 1788db4efbfdSBarry Smith default: 1789db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N; 1790db4efbfdSBarry Smith break; 1791db4efbfdSBarry Smith } 1792db4efbfdSBarry Smith } else { 1793db4efbfdSBarry Smith switch (bs) { 1794db4efbfdSBarry Smith case 1: 1795d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace; 1796db4efbfdSBarry Smith break; 1797db4efbfdSBarry Smith case 2: 1798db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 1799db4efbfdSBarry Smith break; 1800db4efbfdSBarry Smith case 3: 1801db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 1802db4efbfdSBarry Smith break; 1803db4efbfdSBarry Smith case 4: 1804db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 1805db4efbfdSBarry Smith break; 1806db4efbfdSBarry Smith case 5: 1807db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 1808db4efbfdSBarry Smith break; 1809db4efbfdSBarry Smith case 6: 1810db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 1811db4efbfdSBarry Smith break; 1812db4efbfdSBarry Smith case 7: 1813db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 1814db4efbfdSBarry Smith break; 1815db4efbfdSBarry Smith default: 1816db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering; 1817db4efbfdSBarry Smith break; 1818db4efbfdSBarry Smith } 1819db4efbfdSBarry Smith } 1820db4efbfdSBarry Smith PetscFunctionReturn(0); 1821db4efbfdSBarry Smith } 1822db4efbfdSBarry Smith 1823cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 1824cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType,MatReuse,Mat*); 1825d769727bSBarry Smith 18265c9eb25fSBarry Smith #undef __FUNCT__ 18275c9eb25fSBarry Smith #define __FUNCT__ "MatGetFactor_seqsbaij_petsc" 1828cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B) 18295c9eb25fSBarry Smith { 1830d0f46423SBarry Smith PetscInt n = A->rmap->n; 18315c9eb25fSBarry Smith PetscErrorCode ierr; 18325c9eb25fSBarry Smith 18335c9eb25fSBarry Smith PetscFunctionBegin; 18340e92d65fSHong Zhang #if defined(PETSC_USE_COMPLEX) 18350e92d65fSHong Zhang if (A->hermitian) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian Factor is not supported"); 18360e92d65fSHong Zhang #endif 1837ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 18385c9eb25fSBarry Smith ierr = MatSetSizes(*B,n,n,n,n);CHKERRQ(ierr); 18395c9eb25fSBarry Smith if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 18405c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQSBAIJ);CHKERRQ(ierr); 18410298fd71SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL);CHKERRQ(ierr); 184226fbe8dcSKarl Rupp 18437b056e98SHong Zhang (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ; 1844c6d0d4f0SHong Zhang (*B)->ops->iccfactorsymbolic = MatICCFactorSymbolic_SeqSBAIJ; 1845e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported"); 184600c67f3bSHong Zhang 1847d5f3da31SBarry Smith (*B)->factortype = ftype; 184800c67f3bSHong Zhang ierr = PetscFree((*B)->solvertype);CHKERRQ(ierr); 184900c67f3bSHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&(*B)->solvertype);CHKERRQ(ierr); 18505c9eb25fSBarry Smith PetscFunctionReturn(0); 18515c9eb25fSBarry Smith } 18525c9eb25fSBarry Smith 18530bad9183SKris Buschelman /*MC 1854fafad747SKris Buschelman MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices, 18550bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 18560bad9183SKris Buschelman 1857828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 185871dad5bbSBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); after MatAssemblyEnd() 1859828413b8SBarry Smith 18600bad9183SKris Buschelman Options Database Keys: 18610bad9183SKris Buschelman . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions() 18620bad9183SKris Buschelman 186371dad5bbSBarry Smith Notes: By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not 186471dad5bbSBarry Smith stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use 186571dad5bbSBarry Smith the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion. 186671dad5bbSBarry Smith 186771dad5bbSBarry Smith 18680bad9183SKris Buschelman Level: beginner 18690bad9183SKris Buschelman 18700bad9183SKris Buschelman .seealso: MatCreateSeqSBAIJ 18710bad9183SKris Buschelman M*/ 18720bad9183SKris Buschelman 1873cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqSBSTRM(Mat, MatType,MatReuse,Mat*); 1874aa5a9175SDahai Guo 1875a23d5eceSKris Buschelman #undef __FUNCT__ 1876a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ" 18778cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B) 1878a23d5eceSKris Buschelman { 1879a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 1880dfbe8321SBarry Smith PetscErrorCode ierr; 188113f74950SBarry Smith PetscMPIInt size; 1882ace3abfcSBarry Smith PetscBool no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE; 1883a23d5eceSKris Buschelman 1884a23d5eceSKris Buschelman PetscFunctionBegin; 1885ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1886e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1887a23d5eceSKris Buschelman 1888b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1889a23d5eceSKris Buschelman B->data = (void*)b; 1890a23d5eceSKris Buschelman ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 189126fbe8dcSKarl Rupp 1892a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1893a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1894a23d5eceSKris Buschelman b->row = 0; 1895a23d5eceSKris Buschelman b->icol = 0; 1896a23d5eceSKris Buschelman b->reallocs = 0; 1897a23d5eceSKris Buschelman b->saved_values = 0; 18980def2e27SBarry Smith b->inode.limit = 5; 18990def2e27SBarry Smith b->inode.max_limit = 5; 1900a23d5eceSKris Buschelman 1901a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1902a23d5eceSKris Buschelman b->nonew = 0; 1903a23d5eceSKris Buschelman b->diag = 0; 1904a23d5eceSKris Buschelman b->solve_work = 0; 1905a23d5eceSKris Buschelman b->mult_work = 0; 1906a23d5eceSKris Buschelman B->spptr = 0; 1907f2cbd3d5SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 1908a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 1909a23d5eceSKris Buschelman 1910a23d5eceSKris Buschelman b->inew = 0; 1911a23d5eceSKris Buschelman b->jnew = 0; 1912a23d5eceSKris Buschelman b->anew = 0; 1913a23d5eceSKris Buschelman b->a2anew = 0; 1914a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1915a23d5eceSKris Buschelman 191671dad5bbSBarry Smith b->ignore_ltriangular = PETSC_TRUE; 191726fbe8dcSKarl Rupp 1918c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL);CHKERRQ(ierr); 1919941593c8SHong Zhang 1920f5edf698SHong Zhang b->getrow_utriangular = PETSC_FALSE; 192126fbe8dcSKarl Rupp 1922c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->options,((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL);CHKERRQ(ierr); 1923f5edf698SHong Zhang 1924bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ);CHKERRQ(ierr); 1925bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr); 1926bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr); 1927bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr); 1928bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr); 1929bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr); 193038f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ);CHKERRQ(ierr); 1931bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqsbstrm_C",MatConvert_SeqSBAIJ_SeqSBSTRM);CHKERRQ(ierr); 19326214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19336214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_elemental_C",MatConvert_SeqSBAIJ_Elemental);CHKERRQ(ierr); 19346214f412SHong Zhang #endif 193523ce1328SBarry Smith 193623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 193723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 193823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 193923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 194026fbe8dcSKarl Rupp 194117667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ);CHKERRQ(ierr); 19420def2e27SBarry Smith 1943ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat");CHKERRQ(ierr); 19440298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL);CHKERRQ(ierr); 194526fbe8dcSKarl Rupp if (no_unroll) { 194626fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n");CHKERRQ(ierr); 194726fbe8dcSKarl Rupp } 19480298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL);CHKERRQ(ierr); 194926fbe8dcSKarl Rupp if (no_inode) { 195026fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n");CHKERRQ(ierr); 195126fbe8dcSKarl Rupp } 19520298fd71SBarry Smith ierr = PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL);CHKERRQ(ierr); 19530def2e27SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1954ace3abfcSBarry Smith b->inode.use = (PetscBool)(!(no_unroll || no_inode)); 19550def2e27SBarry Smith if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit; 1956a23d5eceSKris Buschelman PetscFunctionReturn(0); 1957a23d5eceSKris Buschelman } 1958a23d5eceSKris Buschelman 1959a23d5eceSKris Buschelman #undef __FUNCT__ 1960a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation" 1961a23d5eceSKris Buschelman /*@C 1962a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 1963a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 1964a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 1965a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 1966a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 1967a23d5eceSKris Buschelman 1968a23d5eceSKris Buschelman Collective on Mat 1969a23d5eceSKris Buschelman 1970a23d5eceSKris Buschelman Input Parameters: 19711c4f3114SJed Brown + B - the symmetric matrix 1972bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1973bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1974a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 1975a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 19760298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 1977a23d5eceSKris Buschelman 1978a23d5eceSKris Buschelman Options Database Keys: 1979a23d5eceSKris Buschelman . -mat_no_unroll - uses code that does not unroll the loops in the 1980a23d5eceSKris Buschelman block calculations (much slower) 1981db4efbfdSBarry Smith . -mat_block_size - size of the blocks to use (only works if a negative bs is passed in 1982a23d5eceSKris Buschelman 1983a23d5eceSKris Buschelman Level: intermediate 1984a23d5eceSKris Buschelman 1985a23d5eceSKris Buschelman Notes: 1986a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 19870298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1988a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 1989a23d5eceSKris Buschelman 1990aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1991aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1992aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1993aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1994aa95bbe8SBarry Smith 199549a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 199649a6f317SBarry Smith 199749a6f317SBarry Smith 199869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 1999a23d5eceSKris Buschelman @*/ 20007087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 200113f74950SBarry Smith { 20024ac538c5SBarry Smith PetscErrorCode ierr; 2003a23d5eceSKris Buschelman 2004a23d5eceSKris Buschelman PetscFunctionBegin; 20056ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20066ba663aaSJed Brown PetscValidType(B,1); 20076ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 20084ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr); 2009a23d5eceSKris Buschelman PetscFunctionReturn(0); 2010a23d5eceSKris Buschelman } 201149b5e25fSSatish Balay 20124a2ae208SSatish Balay #undef __FUNCT__ 201338f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR" 201438f409ebSLisandro Dalcin /*@C 201538f409ebSLisandro Dalcin MatSeqSBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in symmetric block AIJ format. 201638f409ebSLisandro Dalcin 201738f409ebSLisandro Dalcin Input Parameters: 20181c4f3114SJed Brown + B - the matrix 2019eab78319SHong Zhang . bs - size of block, the blocks are ALWAYS square. 202038f409ebSLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 202138f409ebSLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 202238f409ebSLisandro Dalcin - v - optional values in the matrix 202338f409ebSLisandro Dalcin 202438f409ebSLisandro Dalcin Level: developer 202538f409ebSLisandro Dalcin 202638f409ebSLisandro Dalcin Notes: 202738f409ebSLisandro Dalcin The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 202838f409ebSLisandro Dalcin may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 202938f409ebSLisandro Dalcin over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 203038f409ebSLisandro Dalcin MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 203138f409ebSLisandro Dalcin block column and the second index is over columns within a block. 203238f409ebSLisandro Dalcin 203338f409ebSLisandro Dalcin .keywords: matrix, block, aij, compressed row, sparse 203438f409ebSLisandro Dalcin 203538f409ebSLisandro Dalcin .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValuesBlocked(), MatSeqSBAIJSetPreallocation(), MATSEQSBAIJ 203638f409ebSLisandro Dalcin @*/ 203738f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 203838f409ebSLisandro Dalcin { 203938f409ebSLisandro Dalcin PetscErrorCode ierr; 204038f409ebSLisandro Dalcin 204138f409ebSLisandro Dalcin PetscFunctionBegin; 204238f409ebSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_CLASSID,1); 204338f409ebSLisandro Dalcin PetscValidType(B,1); 204438f409ebSLisandro Dalcin PetscValidLogicalCollectiveInt(B,bs,2); 204538f409ebSLisandro Dalcin ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 204638f409ebSLisandro Dalcin PetscFunctionReturn(0); 204738f409ebSLisandro Dalcin } 204838f409ebSLisandro Dalcin 204938f409ebSLisandro Dalcin #undef __FUNCT__ 20504a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ" 2051c464158bSHong Zhang /*@C 2052c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 2053c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 2054c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 2055c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 2056c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 205749b5e25fSSatish Balay 2058c464158bSHong Zhang Collective on MPI_Comm 2059c464158bSHong Zhang 2060c464158bSHong Zhang Input Parameters: 2061c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2062bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2063bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2064c464158bSHong Zhang . m - number of rows, or number of columns 2065c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 2066744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 20670298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 2068c464158bSHong Zhang 2069c464158bSHong Zhang Output Parameter: 2070c464158bSHong Zhang . A - the symmetric matrix 2071c464158bSHong Zhang 2072c464158bSHong Zhang Options Database Keys: 2073c464158bSHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2074c464158bSHong Zhang block calculations (much slower) 2075c464158bSHong Zhang . -mat_block_size - size of the blocks to use 2076c464158bSHong Zhang 2077c464158bSHong Zhang Level: intermediate 2078c464158bSHong Zhang 2079175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2080ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2081175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2082175b88e8SBarry Smith 2083c464158bSHong Zhang Notes: 20846d6d819aSHong Zhang The number of rows and columns must be divisible by blocksize. 20856d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2086c464158bSHong Zhang 2087c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 20880298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 2089a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 2090c464158bSHong Zhang 209149a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 209249a6f317SBarry Smith 209369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 2094c464158bSHong Zhang @*/ 20957087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 2096c464158bSHong Zhang { 2097dfbe8321SBarry Smith PetscErrorCode ierr; 2098c464158bSHong Zhang 2099c464158bSHong Zhang PetscFunctionBegin; 2100f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2101f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2102c464158bSHong Zhang ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2103*367daffbSBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 210449b5e25fSSatish Balay PetscFunctionReturn(0); 210549b5e25fSSatish Balay } 210649b5e25fSSatish Balay 21074a2ae208SSatish Balay #undef __FUNCT__ 21084a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ" 2109dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 211049b5e25fSSatish Balay { 211149b5e25fSSatish Balay Mat C; 211249b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 21136849ba73SBarry Smith PetscErrorCode ierr; 2114b40805acSSatish Balay PetscInt i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 211549b5e25fSSatish Balay 211649b5e25fSSatish Balay PetscFunctionBegin; 2117e32f2f54SBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 211849b5e25fSSatish Balay 211949b5e25fSSatish Balay *B = 0; 2120ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr); 2121d0f46423SBarry Smith ierr = MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 21228e9a0fb8SHong Zhang ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr); 21231d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2124692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 2125692f9cbeSHong Zhang 2126273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2127d5f3da31SBarry Smith C->factortype = A->factortype; 212849b5e25fSSatish Balay c->row = 0; 212949b5e25fSSatish Balay c->icol = 0; 213049b5e25fSSatish Balay c->saved_values = 0; 2131a9817697SBarry Smith c->keepnonzeropattern = a->keepnonzeropattern; 213249b5e25fSSatish Balay C->assembled = PETSC_TRUE; 213349b5e25fSSatish Balay 21341e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 21351e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 213649b5e25fSSatish Balay c->bs2 = a->bs2; 213749b5e25fSSatish Balay c->mbs = a->mbs; 213849b5e25fSSatish Balay c->nbs = a->nbs; 213949b5e25fSSatish Balay 2140c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2141c760cd28SBarry Smith c->imax = a->imax; 2142c760cd28SBarry Smith c->ilen = a->ilen; 2143c760cd28SBarry Smith c->free_imax_ilen = PETSC_FALSE; 2144c760cd28SBarry Smith } else { 2145dcca6d9dSJed Brown ierr = PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen);CHKERRQ(ierr); 21463bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 214749b5e25fSSatish Balay for (i=0; i<mbs; i++) { 214849b5e25fSSatish Balay c->imax[i] = a->imax[i]; 214949b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 215049b5e25fSSatish Balay } 2151c760cd28SBarry Smith c->free_imax_ilen = PETSC_TRUE; 2152c760cd28SBarry Smith } 215349b5e25fSSatish Balay 215449b5e25fSSatish Balay /* allocate the matrix space */ 21554da8f245SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2156785e854fSJed Brown ierr = PetscMalloc1(bs2*nz,&c->a);CHKERRQ(ierr); 21573bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 215844e1c64aSLisandro Dalcin c->i = a->i; 215944e1c64aSLisandro Dalcin c->j = a->j; 21604da8f245SBarry Smith c->singlemalloc = PETSC_FALSE; 216144e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21624da8f245SBarry Smith c->free_ij = PETSC_FALSE; 21634da8f245SBarry Smith c->parent = A; 21644da8f245SBarry Smith ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); 21654da8f245SBarry Smith ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21664da8f245SBarry Smith ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21674da8f245SBarry Smith } else { 2168dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr); 216913f74950SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 21703bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));CHKERRQ(ierr); 21714da8f245SBarry Smith c->singlemalloc = PETSC_TRUE; 217244e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21734da8f245SBarry Smith c->free_ij = PETSC_TRUE; 21744da8f245SBarry Smith } 217549b5e25fSSatish Balay if (mbs > 0) { 21764da8f245SBarry Smith if (cpvalues != MAT_SHARE_NONZERO_PATTERN) { 217713f74950SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 21784da8f245SBarry Smith } 217949b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 218049b5e25fSSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 218149b5e25fSSatish Balay } else { 218249b5e25fSSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 218349b5e25fSSatish Balay } 2184a1c3900fSBarry Smith if (a->jshort) { 218544e1c64aSLisandro Dalcin /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */ 218644e1c64aSLisandro Dalcin /* if the parent matrix is reassembled, this child matrix will never notice */ 2187785e854fSJed Brown ierr = PetscMalloc1(nz,&c->jshort);CHKERRQ(ierr); 21883bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short));CHKERRQ(ierr); 2189a1c3900fSBarry Smith ierr = PetscMemcpy(c->jshort,a->jshort,nz*sizeof(unsigned short));CHKERRQ(ierr); 219026fbe8dcSKarl Rupp 21914da8f245SBarry Smith c->free_jshort = PETSC_TRUE; 21924da8f245SBarry Smith } 2193a1c3900fSBarry Smith } 219449b5e25fSSatish Balay 219549b5e25fSSatish Balay c->roworiented = a->roworiented; 219649b5e25fSSatish Balay c->nonew = a->nonew; 219749b5e25fSSatish Balay 219849b5e25fSSatish Balay if (a->diag) { 2199c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2200c760cd28SBarry Smith c->diag = a->diag; 2201c760cd28SBarry Smith c->free_diag = PETSC_FALSE; 2202c760cd28SBarry Smith } else { 2203785e854fSJed Brown ierr = PetscMalloc1(mbs,&c->diag);CHKERRQ(ierr); 22043bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt));CHKERRQ(ierr); 220526fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 2206c760cd28SBarry Smith c->free_diag = PETSC_TRUE; 2207c760cd28SBarry Smith } 220844e1c64aSLisandro Dalcin } 22096c6c5352SBarry Smith c->nz = a->nz; 2210f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 221149b5e25fSSatish Balay c->solve_work = 0; 221249b5e25fSSatish Balay c->mult_work = 0; 221326fbe8dcSKarl Rupp 221449b5e25fSSatish Balay *B = C; 2215140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 221649b5e25fSSatish Balay PetscFunctionReturn(0); 221749b5e25fSSatish Balay } 221849b5e25fSSatish Balay 22194a2ae208SSatish Balay #undef __FUNCT__ 22205bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqSBAIJ" 2221112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqSBAIJ(Mat newmat,PetscViewer viewer) 22222f480046SShri Abhyankar { 22232f480046SShri Abhyankar Mat_SeqSBAIJ *a; 22242f480046SShri Abhyankar PetscErrorCode ierr; 22252f480046SShri Abhyankar int fd; 22262f480046SShri Abhyankar PetscMPIInt size; 22273059b6faSBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs; 22282f480046SShri Abhyankar PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount; 22292f480046SShri Abhyankar PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols; 22302f480046SShri Abhyankar PetscInt *masked,nmask,tmp,bs2,ishift; 22312f480046SShri Abhyankar PetscScalar *aa; 2232ce94432eSBarry Smith MPI_Comm comm; 22332f480046SShri Abhyankar 22342f480046SShri Abhyankar PetscFunctionBegin; 2235c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 2236c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2237ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 2238c5929fdfSBarry Smith ierr = PetscOptionsGetInt(((PetscObject)newmat)->options,((PetscObject)newmat)->prefix,"-matload_block_size",&bs,NULL);CHKERRQ(ierr); 22393059b6faSBarry Smith if (bs < 0) bs = 1; 22402f480046SShri Abhyankar bs2 = bs*bs; 22412f480046SShri Abhyankar 22422f480046SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 22432f480046SShri Abhyankar if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor"); 22442f480046SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 22452f480046SShri Abhyankar ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 22462f480046SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 22472f480046SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 22482f480046SShri Abhyankar 22492f480046SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ"); 22502f480046SShri Abhyankar 22512f480046SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 22522f480046SShri Abhyankar 22532f480046SShri Abhyankar /* 22542f480046SShri Abhyankar This code adds extra rows to make sure the number of rows is 22552f480046SShri Abhyankar divisible by the blocksize 22562f480046SShri Abhyankar */ 22572f480046SShri Abhyankar mbs = M/bs; 22582f480046SShri Abhyankar extra_rows = bs - M + bs*(mbs); 22592f480046SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 22602f480046SShri Abhyankar else mbs++; 22612f480046SShri Abhyankar if (extra_rows) { 22622f480046SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 22632f480046SShri Abhyankar } 22642f480046SShri Abhyankar 22652f480046SShri Abhyankar /* Set global sizes if not already set */ 22662f480046SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) { 22672f480046SShri Abhyankar ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 22682f480046SShri Abhyankar } else { /* Check if the matrix global sizes are correct */ 22692f480046SShri Abhyankar ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr); 22702f480046SShri Abhyankar if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols); 22712f480046SShri Abhyankar } 22722f480046SShri Abhyankar 22732f480046SShri Abhyankar /* read in row lengths */ 2274854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 22752f480046SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 22762f480046SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 22772f480046SShri Abhyankar 22782f480046SShri Abhyankar /* read in column indices */ 2279854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr); 22802f480046SShri Abhyankar ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 22812f480046SShri Abhyankar for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 22822f480046SShri Abhyankar 22832f480046SShri Abhyankar /* loop over row lengths determining block row lengths */ 22841795a4d1SJed Brown ierr = PetscCalloc1(mbs,&s_browlengths);CHKERRQ(ierr); 2285dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr); 22862f480046SShri Abhyankar ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 22872f480046SShri Abhyankar rowcount = 0; 22882f480046SShri Abhyankar nzcount = 0; 22892f480046SShri Abhyankar for (i=0; i<mbs; i++) { 22902f480046SShri Abhyankar nmask = 0; 22912f480046SShri Abhyankar for (j=0; j<bs; j++) { 22922f480046SShri Abhyankar kmax = rowlengths[rowcount]; 22932f480046SShri Abhyankar for (k=0; k<kmax; k++) { 22942f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 22952f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;} 22962f480046SShri Abhyankar } 22972f480046SShri Abhyankar rowcount++; 22982f480046SShri Abhyankar } 22992f480046SShri Abhyankar s_browlengths[i] += nmask; 23002f480046SShri Abhyankar 23012f480046SShri Abhyankar /* zero out the mask elements we set */ 23022f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 23032f480046SShri Abhyankar } 23042f480046SShri Abhyankar 23052f480046SShri Abhyankar /* Do preallocation */ 2306*367daffbSBarry Smith ierr = MatSeqSBAIJSetPreallocation(newmat,bs,0,s_browlengths);CHKERRQ(ierr); 23072f480046SShri Abhyankar a = (Mat_SeqSBAIJ*)newmat->data; 23082f480046SShri Abhyankar 23092f480046SShri Abhyankar /* set matrix "i" values */ 23102f480046SShri Abhyankar a->i[0] = 0; 23112f480046SShri Abhyankar for (i=1; i<= mbs; i++) { 23122f480046SShri Abhyankar a->i[i] = a->i[i-1] + s_browlengths[i-1]; 23132f480046SShri Abhyankar a->ilen[i-1] = s_browlengths[i-1]; 23142f480046SShri Abhyankar } 23152f480046SShri Abhyankar a->nz = a->i[mbs]; 23162f480046SShri Abhyankar 23172f480046SShri Abhyankar /* read in nonzero values */ 2318854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr); 23192f480046SShri Abhyankar ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 23202f480046SShri Abhyankar for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 23212f480046SShri Abhyankar 23222f480046SShri Abhyankar /* set "a" and "j" values into matrix */ 23232f480046SShri Abhyankar nzcount = 0; jcount = 0; 23242f480046SShri Abhyankar for (i=0; i<mbs; i++) { 23252f480046SShri Abhyankar nzcountb = nzcount; 23262f480046SShri Abhyankar nmask = 0; 23272f480046SShri Abhyankar for (j=0; j<bs; j++) { 23282f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23292f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23302f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 23312f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;} 23322f480046SShri Abhyankar } 23332f480046SShri Abhyankar } 23342f480046SShri Abhyankar /* sort the masked values */ 23352f480046SShri Abhyankar ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 23362f480046SShri Abhyankar 23372f480046SShri Abhyankar /* set "j" values into matrix */ 23382f480046SShri Abhyankar maskcount = 1; 23392f480046SShri Abhyankar for (j=0; j<nmask; j++) { 23402f480046SShri Abhyankar a->j[jcount++] = masked[j]; 23412f480046SShri Abhyankar mask[masked[j]] = maskcount++; 23422f480046SShri Abhyankar } 23432f480046SShri Abhyankar 23442f480046SShri Abhyankar /* set "a" values into matrix */ 23452f480046SShri Abhyankar ishift = bs2*a->i[i]; 23462f480046SShri Abhyankar for (j=0; j<bs; j++) { 23472f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23482f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23492f480046SShri Abhyankar tmp = jj[nzcountb]/bs; /* block col. index */ 23502f480046SShri Abhyankar if (tmp >= i) { 23512f480046SShri Abhyankar block = mask[tmp] - 1; 23522f480046SShri Abhyankar point = jj[nzcountb] - bs*tmp; 23532f480046SShri Abhyankar idx = ishift + bs2*block + j + bs*point; 23542f480046SShri Abhyankar a->a[idx] = aa[nzcountb]; 23552f480046SShri Abhyankar } 23562f480046SShri Abhyankar nzcountb++; 23572f480046SShri Abhyankar } 23582f480046SShri Abhyankar } 23592f480046SShri Abhyankar /* zero out the mask elements we set */ 23602f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 23612f480046SShri Abhyankar } 23622f480046SShri Abhyankar if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 23632f480046SShri Abhyankar 23642f480046SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 23652f480046SShri Abhyankar ierr = PetscFree(s_browlengths);CHKERRQ(ierr); 23662f480046SShri Abhyankar ierr = PetscFree(aa);CHKERRQ(ierr); 23672f480046SShri Abhyankar ierr = PetscFree(jj);CHKERRQ(ierr); 23682f480046SShri Abhyankar ierr = PetscFree2(mask,masked);CHKERRQ(ierr); 23692f480046SShri Abhyankar 23702f480046SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23712f480046SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23722f480046SShri Abhyankar PetscFunctionReturn(0); 23732f480046SShri Abhyankar } 23742f480046SShri Abhyankar 23752f480046SShri Abhyankar #undef __FUNCT__ 2376c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqSBAIJWithArrays" 2377c75a6043SHong Zhang /*@ 2378c75a6043SHong Zhang MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements 2379c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 2380c75a6043SHong Zhang 2381c75a6043SHong Zhang Collective on MPI_Comm 2382c75a6043SHong Zhang 2383c75a6043SHong Zhang Input Parameters: 2384c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 2385c75a6043SHong Zhang . bs - size of block 2386c75a6043SHong Zhang . m - number of rows 2387c75a6043SHong Zhang . n - number of columns 2388c75a6043SHong Zhang . i - row indices 2389c75a6043SHong Zhang . j - column indices 2390c75a6043SHong Zhang - a - matrix values 2391c75a6043SHong Zhang 2392c75a6043SHong Zhang Output Parameter: 2393c75a6043SHong Zhang . mat - the matrix 2394c75a6043SHong Zhang 2395dfb205c3SBarry Smith Level: advanced 2396c75a6043SHong Zhang 2397c75a6043SHong Zhang Notes: 2398c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 2399c75a6043SHong Zhang once the matrix is destroyed 2400c75a6043SHong Zhang 2401c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 2402c75a6043SHong Zhang 2403c75a6043SHong Zhang The i and j indices are 0 based 2404c75a6043SHong Zhang 2405dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1 2406dfb205c3SBarry Smith it is the regular CSR format excluding the lower triangular elements. 2407dfb205c3SBarry Smith 240869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSBAIJ(), MatCreateSeqSBAIJ() 2409c75a6043SHong Zhang 2410c75a6043SHong Zhang @*/ 24117087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat) 2412c75a6043SHong Zhang { 2413c75a6043SHong Zhang PetscErrorCode ierr; 2414c75a6043SHong Zhang PetscInt ii; 2415c75a6043SHong Zhang Mat_SeqSBAIJ *sbaij; 2416c75a6043SHong Zhang 2417c75a6043SHong Zhang PetscFunctionBegin; 2418e32f2f54SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 2419e32f2f54SBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2420c75a6043SHong Zhang 2421c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2422c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 2423c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQSBAIJ);CHKERRQ(ierr); 2424*367daffbSBarry Smith ierr = MatSeqSBAIJSetPreallocation(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 2425c75a6043SHong Zhang sbaij = (Mat_SeqSBAIJ*)(*mat)->data; 2426dcca6d9dSJed Brown ierr = PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen);CHKERRQ(ierr); 24273bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr); 2428c75a6043SHong Zhang 2429c75a6043SHong Zhang sbaij->i = i; 2430c75a6043SHong Zhang sbaij->j = j; 2431c75a6043SHong Zhang sbaij->a = a; 243226fbe8dcSKarl Rupp 2433c75a6043SHong Zhang sbaij->singlemalloc = PETSC_FALSE; 2434c75a6043SHong Zhang sbaij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 2435e6b907acSBarry Smith sbaij->free_a = PETSC_FALSE; 2436e6b907acSBarry Smith sbaij->free_ij = PETSC_FALSE; 2437c75a6043SHong Zhang 2438c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 2439c75a6043SHong Zhang sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii]; 2440c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2441e32f2f54SBarry Smith if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 2442c75a6043SHong Zhang #endif 2443c75a6043SHong Zhang } 2444c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2445c75a6043SHong Zhang for (ii=0; ii<sbaij->i[m]; ii++) { 2446e32f2f54SBarry Smith if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 2447e32f2f54SBarry Smith if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 2448c75a6043SHong Zhang } 2449c75a6043SHong Zhang #endif 2450c75a6043SHong Zhang 2451c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2452c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2453c75a6043SHong Zhang PetscFunctionReturn(0); 2454c75a6043SHong Zhang } 2455d06b337dSHong Zhang 245659f5e6ceSHong Zhang #undef __FUNCT__ 245759f5e6ceSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ" 245859f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 245959f5e6ceSHong Zhang { 246059f5e6ceSHong Zhang PetscErrorCode ierr; 246159f5e6ceSHong Zhang 246259f5e6ceSHong Zhang PetscFunctionBegin; 246359f5e6ceSHong Zhang ierr = MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr); 246459f5e6ceSHong Zhang PetscFunctionReturn(0); 246559f5e6ceSHong Zhang } 2466d06b337dSHong Zhang 2467d06b337dSHong Zhang 246849b5e25fSSatish Balay 246949b5e25fSSatish Balay 2470