xref: /petsc/src/mat/impls/sbaij/seq/sbaij.c (revision 4e7234bf172ce7019c4948834d73bd3002d026ba)
173f4d377SMatthew Knepley /*$Id: sbaij.c,v 1.62 2001/08/07 03:03:01 balay Exp $*/
249b5e25fSSatish Balay 
349b5e25fSSatish Balay /*
4a1373b80SHong Zhang     Defines the basic matrix operations for the SBAIJ (compressed row)
549b5e25fSSatish Balay   matrix storage format.
649b5e25fSSatish Balay */
79e070d67SMatthew Knepley #include "src/mat/impls/baij/seq/baij.h"         /*I "petscmat.h" I*/
849b5e25fSSatish Balay #include "src/vec/vecimpl.h"
949b5e25fSSatish Balay #include "src/inline/spops.h"
10aec82049SSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
1149b5e25fSSatish Balay 
1249b5e25fSSatish Balay #define CHUNKSIZE  10
1349b5e25fSSatish Balay 
1449b5e25fSSatish Balay /*
1549b5e25fSSatish Balay      Checks for missing diagonals
1649b5e25fSSatish Balay */
174a2ae208SSatish Balay #undef __FUNCT__
184a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ"
1949b5e25fSSatish Balay int MatMissingDiagonal_SeqSBAIJ(Mat A)
2049b5e25fSSatish Balay {
21045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
2249b5e25fSSatish Balay   int         *diag,*jj = a->j,i,ierr;
2349b5e25fSSatish Balay 
2449b5e25fSSatish Balay   PetscFunctionBegin;
25045c9aa0SHong Zhang   ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr);
2649b5e25fSSatish Balay   diag = a->diag;
2749b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
28e11b0e14SHong Zhang     if (jj[diag[i]] != i) SETERRQ1(1,"Matrix is missing diagonal number %d",i);
2949b5e25fSSatish Balay   }
3049b5e25fSSatish Balay   PetscFunctionReturn(0);
3149b5e25fSSatish Balay }
3249b5e25fSSatish Balay 
334a2ae208SSatish Balay #undef __FUNCT__
344a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ"
3549b5e25fSSatish Balay int MatMarkDiagonal_SeqSBAIJ(Mat A)
3649b5e25fSSatish Balay {
37045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
38b424e231SHong Zhang   int          i,mbs = a->mbs,ierr;
3949b5e25fSSatish Balay 
4049b5e25fSSatish Balay   PetscFunctionBegin;
4149b5e25fSSatish Balay   if (a->diag) PetscFunctionReturn(0);
4249b5e25fSSatish Balay 
43b424e231SHong Zhang   ierr = PetscMalloc((mbs+1)*sizeof(int),&a->diag);CHKERRQ(ierr);
44b424e231SHong Zhang   PetscLogObjectMemory(A,(mbs+1)*sizeof(int));
45b424e231SHong Zhang   for (i=0; i<mbs; i++) a->diag[i] = a->i[i];
4649b5e25fSSatish Balay   PetscFunctionReturn(0);
4749b5e25fSSatish Balay }
4849b5e25fSSatish Balay 
494a2ae208SSatish Balay #undef __FUNCT__
504a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ"
51*4e7234bfSBarry Smith static int MatGetRowIJ_SeqSBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int *ia[],int *ja[],PetscTruth *done)
5249b5e25fSSatish Balay {
53a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
549e37e433SSatish Balay   int         n = a->mbs,i;
5549b5e25fSSatish Balay 
5649b5e25fSSatish Balay   PetscFunctionBegin;
57d3e5a4abSHong Zhang   *nn = n;
58a1373b80SHong Zhang   if (!ia) PetscFunctionReturn(0);
59a1373b80SHong Zhang 
60a6ece127SHong Zhang   if (oshift == 1) {
61a6ece127SHong Zhang     /* temporarily add 1 to i and j indices */
62a6ece127SHong Zhang     int s_nz = a->i[n];
63a6ece127SHong Zhang     for (i=0; i<s_nz; i++) a->j[i]++;
64a1373b80SHong Zhang     for (i=0; i<n+1; i++) a->i[i]++;
65a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
66a1373b80SHong Zhang   } else {
67a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
68a6ece127SHong Zhang   }
6949b5e25fSSatish Balay   PetscFunctionReturn(0);
7049b5e25fSSatish Balay }
7149b5e25fSSatish Balay 
724a2ae208SSatish Balay #undef __FUNCT__
734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ"
74*4e7234bfSBarry Smith static int MatRestoreRowIJ_SeqSBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int *ia[],int *ja[],PetscTruth *done)
7549b5e25fSSatish Balay {
76b7aaefc3SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
77a15ac5e4SHong Zhang   int         i,n = a->mbs;
78a6ece127SHong Zhang 
7949b5e25fSSatish Balay   PetscFunctionBegin;
8049b5e25fSSatish Balay   if (!ia) PetscFunctionReturn(0);
81a6ece127SHong Zhang 
82a6ece127SHong Zhang   if (oshift == 1) {
83a6ece127SHong Zhang     int s_nz = a->i[n]-1;
84a6ece127SHong Zhang     for (i=0; i<s_nz; i++) a->j[i]--;
85a6ece127SHong Zhang     for (i=0; i<n+1; i++) a->i[i]--;
86a6ece127SHong Zhang   }
87a6ece127SHong Zhang   PetscFunctionReturn(0);
8849b5e25fSSatish Balay }
8949b5e25fSSatish Balay 
904a2ae208SSatish Balay #undef __FUNCT__
914a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_SeqSBAIJ"
9249b5e25fSSatish Balay int MatGetBlockSize_SeqSBAIJ(Mat mat,int *bs)
9349b5e25fSSatish Balay {
9449b5e25fSSatish Balay   Mat_SeqSBAIJ *sbaij = (Mat_SeqSBAIJ*)mat->data;
9549b5e25fSSatish Balay 
9649b5e25fSSatish Balay   PetscFunctionBegin;
9749b5e25fSSatish Balay   *bs = sbaij->bs;
9849b5e25fSSatish Balay   PetscFunctionReturn(0);
9949b5e25fSSatish Balay }
10049b5e25fSSatish Balay 
1014a2ae208SSatish Balay #undef __FUNCT__
1024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ"
10349b5e25fSSatish Balay int MatDestroy_SeqSBAIJ(Mat A)
10449b5e25fSSatish Balay {
10549b5e25fSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
10649b5e25fSSatish Balay   int         ierr;
10749b5e25fSSatish Balay 
10849b5e25fSSatish Balay   PetscFunctionBegin;
10949b5e25fSSatish Balay #if defined(PETSC_USE_LOG)
110b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%d, s_NZ=%d",A->m,a->s_nz);
11149b5e25fSSatish Balay #endif
11249b5e25fSSatish Balay   ierr = PetscFree(a->a);CHKERRQ(ierr);
11349b5e25fSSatish Balay   if (!a->singlemalloc) {
11449b5e25fSSatish Balay     ierr = PetscFree(a->i);CHKERRQ(ierr);
11563c8bf9fSHong Zhang     ierr = PetscFree(a->j);CHKERRQ(ierr);
11649b5e25fSSatish Balay   }
11749b5e25fSSatish Balay   if (a->row) {
11849b5e25fSSatish Balay     ierr = ISDestroy(a->row);CHKERRQ(ierr);
11949b5e25fSSatish Balay   }
12049b5e25fSSatish Balay   if (a->diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
12149b5e25fSSatish Balay   if (a->ilen) {ierr = PetscFree(a->ilen);CHKERRQ(ierr);}
12249b5e25fSSatish Balay   if (a->imax) {ierr = PetscFree(a->imax);CHKERRQ(ierr);}
12349b5e25fSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
124d59c15a7SBarry Smith   if (a->solve_work)  {ierr = PetscFree(a->solve_work);CHKERRQ(ierr);}
125d59c15a7SBarry Smith   if (a->solves_work) {ierr = PetscFree(a->solves_work);CHKERRQ(ierr);}
126d59c15a7SBarry Smith   if (a->mult_work)   {ierr = PetscFree(a->mult_work);CHKERRQ(ierr);}
12749b5e25fSSatish Balay   if (a->saved_values) {ierr = PetscFree(a->saved_values);CHKERRQ(ierr);}
128c4319e64SHong Zhang   if (a->xtoy) {ierr = PetscFree(a->xtoy);CHKERRQ(ierr);}
1291a3463dfSHong Zhang 
1301a3463dfSHong Zhang   if (a->inew){
1311a3463dfSHong Zhang     ierr = PetscFree(a->inew);CHKERRQ(ierr);
1321a3463dfSHong Zhang     a->inew = 0;
1331a3463dfSHong Zhang   }
13449b5e25fSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
13549b5e25fSSatish Balay   PetscFunctionReturn(0);
13649b5e25fSSatish Balay }
13749b5e25fSSatish Balay 
1384a2ae208SSatish Balay #undef __FUNCT__
1394a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ"
14049b5e25fSSatish Balay int MatSetOption_SeqSBAIJ(Mat A,MatOption op)
14149b5e25fSSatish Balay {
142045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
14349b5e25fSSatish Balay 
14449b5e25fSSatish Balay   PetscFunctionBegin;
1454d9d31abSKris Buschelman   switch (op) {
1464d9d31abSKris Buschelman   case MAT_ROW_ORIENTED:
1474d9d31abSKris Buschelman     a->roworiented    = PETSC_TRUE;
1484d9d31abSKris Buschelman     break;
1494d9d31abSKris Buschelman   case MAT_COLUMN_ORIENTED:
1504d9d31abSKris Buschelman     a->roworiented    = PETSC_FALSE;
1514d9d31abSKris Buschelman     break;
1524d9d31abSKris Buschelman   case MAT_COLUMNS_SORTED:
1534d9d31abSKris Buschelman     a->sorted         = PETSC_TRUE;
1544d9d31abSKris Buschelman     break;
1554d9d31abSKris Buschelman   case MAT_COLUMNS_UNSORTED:
1564d9d31abSKris Buschelman     a->sorted         = PETSC_FALSE;
1574d9d31abSKris Buschelman     break;
1584d9d31abSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1594d9d31abSKris Buschelman     a->keepzeroedrows = PETSC_TRUE;
1604d9d31abSKris Buschelman     break;
1614d9d31abSKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1624d9d31abSKris Buschelman     a->nonew          = 1;
1634d9d31abSKris Buschelman     break;
1644d9d31abSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1654d9d31abSKris Buschelman     a->nonew          = -1;
1664d9d31abSKris Buschelman     break;
1674d9d31abSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1684d9d31abSKris Buschelman     a->nonew          = -2;
1694d9d31abSKris Buschelman     break;
1704d9d31abSKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1714d9d31abSKris Buschelman     a->nonew          = 0;
1724d9d31abSKris Buschelman     break;
1734d9d31abSKris Buschelman   case MAT_ROWS_SORTED:
1744d9d31abSKris Buschelman   case MAT_ROWS_UNSORTED:
1754d9d31abSKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1764d9d31abSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1774d9d31abSKris Buschelman   case MAT_USE_HASH_TABLE:
178b0a32e0cSBarry Smith     PetscLogInfo(A,"MatSetOption_SeqSBAIJ:Option ignored\n");
1794d9d31abSKris Buschelman     break;
1804d9d31abSKris Buschelman   case MAT_NO_NEW_DIAGONALS:
18129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1824d9d31abSKris Buschelman   default:
18329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
18449b5e25fSSatish Balay   }
18549b5e25fSSatish Balay   PetscFunctionReturn(0);
18649b5e25fSSatish Balay }
18749b5e25fSSatish Balay 
1884a2ae208SSatish Balay #undef __FUNCT__
1894a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ"
19087828ca2SBarry Smith int MatGetRow_SeqSBAIJ(Mat A,int row,int *ncols,int **cols,PetscScalar **v)
19149b5e25fSSatish Balay {
19249b5e25fSSatish Balay   Mat_SeqSBAIJ  *a = (Mat_SeqSBAIJ*)A->data;
19382502324SSatish Balay   int          itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*cols_i,bs2,ierr;
19449b5e25fSSatish Balay   MatScalar    *aa,*aa_i;
19587828ca2SBarry Smith   PetscScalar  *v_i;
19649b5e25fSSatish Balay 
19749b5e25fSSatish Balay   PetscFunctionBegin;
19849b5e25fSSatish Balay   bs  = a->bs;
19949b5e25fSSatish Balay   ai  = a->i;
20049b5e25fSSatish Balay   aj  = a->j;
20149b5e25fSSatish Balay   aa  = a->a;
20249b5e25fSSatish Balay   bs2 = a->bs2;
20349b5e25fSSatish Balay 
204c464158bSHong Zhang   if (row < 0 || row >= A->m) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row out of range");
20549b5e25fSSatish Balay 
20649b5e25fSSatish Balay   bn  = row/bs;   /* Block number */
20749b5e25fSSatish Balay   bp  = row % bs; /* Block position */
20849b5e25fSSatish Balay   M   = ai[bn+1] - ai[bn];
20949b5e25fSSatish Balay   *ncols = bs*M;
21049b5e25fSSatish Balay 
21149b5e25fSSatish Balay   if (v) {
21249b5e25fSSatish Balay     *v = 0;
21349b5e25fSSatish Balay     if (*ncols) {
21487828ca2SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscScalar),v);CHKERRQ(ierr);
21549b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
21649b5e25fSSatish Balay         v_i  = *v + i*bs;
21749b5e25fSSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
21849b5e25fSSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
21949b5e25fSSatish Balay       }
22049b5e25fSSatish Balay     }
22149b5e25fSSatish Balay   }
22249b5e25fSSatish Balay 
22349b5e25fSSatish Balay   if (cols) {
22449b5e25fSSatish Balay     *cols = 0;
22549b5e25fSSatish Balay     if (*ncols) {
22682502324SSatish Balay       ierr = PetscMalloc((*ncols+row)*sizeof(int),cols);CHKERRQ(ierr);
22749b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
22849b5e25fSSatish Balay         cols_i = *cols + i*bs;
22949b5e25fSSatish Balay         itmp  = bs*aj[ai[bn] + i];
23049b5e25fSSatish Balay         for (j=0; j<bs; j++) {cols_i[j] = itmp++;}
23149b5e25fSSatish Balay       }
23249b5e25fSSatish Balay     }
23349b5e25fSSatish Balay   }
23449b5e25fSSatish Balay 
23549b5e25fSSatish Balay   /*search column A(0:row-1,row) (=A(row,0:row-1)). Could be expensive! */
2365ddb2528SHong Zhang   /* this segment is currently removed, so only entries in the upper triangle are obtained */
2375ddb2528SHong Zhang #ifdef column_search
23849b5e25fSSatish Balay   v_i    = *v    + M*bs;
23949b5e25fSSatish Balay   cols_i = *cols + M*bs;
24049b5e25fSSatish Balay   for (i=0; i<bn; i++){ /* for each block row */
24149b5e25fSSatish Balay     M = ai[i+1] - ai[i];
24249b5e25fSSatish Balay     for (j=0; j<M; j++){
24349b5e25fSSatish Balay       itmp = aj[ai[i] + j];    /* block column value */
24449b5e25fSSatish Balay       if (itmp == bn){
24549b5e25fSSatish Balay         aa_i   = aa    + bs2*(ai[i] + j) + bs*bp;
24649b5e25fSSatish Balay         for (k=0; k<bs; k++) {
24749b5e25fSSatish Balay           *cols_i++ = i*bs+k;
24849b5e25fSSatish Balay           *v_i++    = aa_i[k];
24949b5e25fSSatish Balay         }
25049b5e25fSSatish Balay         *ncols += bs;
25149b5e25fSSatish Balay         break;
25249b5e25fSSatish Balay       }
25349b5e25fSSatish Balay     }
25449b5e25fSSatish Balay   }
2555ddb2528SHong Zhang #endif
25649b5e25fSSatish Balay 
25749b5e25fSSatish Balay   PetscFunctionReturn(0);
25849b5e25fSSatish Balay }
25949b5e25fSSatish Balay 
2604a2ae208SSatish Balay #undef __FUNCT__
2614a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ"
26287828ca2SBarry Smith int MatRestoreRow_SeqSBAIJ(Mat A,int row,int *nz,int **idx,PetscScalar **v)
26349b5e25fSSatish Balay {
26449b5e25fSSatish Balay   int ierr;
26549b5e25fSSatish Balay 
26649b5e25fSSatish Balay   PetscFunctionBegin;
26749b5e25fSSatish Balay   if (idx) {if (*idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}}
26849b5e25fSSatish Balay   if (v)   {if (*v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}}
26949b5e25fSSatish Balay   PetscFunctionReturn(0);
27049b5e25fSSatish Balay }
27149b5e25fSSatish Balay 
2724a2ae208SSatish Balay #undef __FUNCT__
2734a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ"
27449b5e25fSSatish Balay int MatTranspose_SeqSBAIJ(Mat A,Mat *B)
27549b5e25fSSatish Balay {
2768115998fSBarry Smith   int ierr;
27749b5e25fSSatish Balay   PetscFunctionBegin;
278999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
2798115998fSBarry Smith   PetscFunctionReturn(0);
28049b5e25fSSatish Balay }
28149b5e25fSSatish Balay 
2824a2ae208SSatish Balay #undef __FUNCT__
2834a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Binary"
284b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_Binary(Mat A,PetscViewer viewer)
28549b5e25fSSatish Balay {
28649b5e25fSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
28749b5e25fSSatish Balay   int          i,fd,*col_lens,ierr,bs = a->bs,count,*jj,j,k,l,bs2=a->bs2;
28887828ca2SBarry Smith   PetscScalar  *aa;
28949b5e25fSSatish Balay   FILE         *file;
29049b5e25fSSatish Balay 
29149b5e25fSSatish Balay   PetscFunctionBegin;
292b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
29382502324SSatish Balay   ierr        = PetscMalloc((4+A->m)*sizeof(int),&col_lens);CHKERRQ(ierr);
294552e946dSBarry Smith   col_lens[0] = MAT_FILE_COOKIE;
29549b5e25fSSatish Balay 
296c464158bSHong Zhang   col_lens[1] = A->m;
297c464158bSHong Zhang   col_lens[2] = A->m;
29849b5e25fSSatish Balay   col_lens[3] = a->s_nz*bs2;
29949b5e25fSSatish Balay 
30049b5e25fSSatish Balay   /* store lengths of each row and write (including header) to file */
30149b5e25fSSatish Balay   count = 0;
30249b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
30349b5e25fSSatish Balay     for (j=0; j<bs; j++) {
30449b5e25fSSatish Balay       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
30549b5e25fSSatish Balay     }
30649b5e25fSSatish Balay   }
307c464158bSHong Zhang   ierr = PetscBinaryWrite(fd,col_lens,4+A->m,PETSC_INT,1);CHKERRQ(ierr);
30849b5e25fSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
30949b5e25fSSatish Balay 
31049b5e25fSSatish Balay   /* store column indices (zero start index) */
31182502324SSatish Balay   ierr  = PetscMalloc((a->s_nz+1)*bs2*sizeof(int),&jj);CHKERRQ(ierr);
31249b5e25fSSatish Balay   count = 0;
31349b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
31449b5e25fSSatish Balay     for (j=0; j<bs; j++) {
31549b5e25fSSatish Balay       for (k=a->i[i]; k<a->i[i+1]; k++) {
31649b5e25fSSatish Balay         for (l=0; l<bs; l++) {
31749b5e25fSSatish Balay           jj[count++] = bs*a->j[k] + l;
31849b5e25fSSatish Balay         }
31949b5e25fSSatish Balay       }
32049b5e25fSSatish Balay     }
32149b5e25fSSatish Balay   }
32249b5e25fSSatish Balay   ierr = PetscBinaryWrite(fd,jj,bs2*a->s_nz,PETSC_INT,0);CHKERRQ(ierr);
32349b5e25fSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
32449b5e25fSSatish Balay 
32549b5e25fSSatish Balay   /* store nonzero values */
32687828ca2SBarry Smith   ierr  = PetscMalloc((a->s_nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
32749b5e25fSSatish Balay   count = 0;
32849b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
32949b5e25fSSatish Balay     for (j=0; j<bs; j++) {
33049b5e25fSSatish Balay       for (k=a->i[i]; k<a->i[i+1]; k++) {
33149b5e25fSSatish Balay         for (l=0; l<bs; l++) {
33249b5e25fSSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
33349b5e25fSSatish Balay         }
33449b5e25fSSatish Balay       }
33549b5e25fSSatish Balay     }
33649b5e25fSSatish Balay   }
33749b5e25fSSatish Balay   ierr = PetscBinaryWrite(fd,aa,bs2*a->s_nz,PETSC_SCALAR,0);CHKERRQ(ierr);
33849b5e25fSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
33949b5e25fSSatish Balay 
340b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
34149b5e25fSSatish Balay   if (file) {
34249b5e25fSSatish Balay     fprintf(file,"-matload_block_size %d\n",a->bs);
34349b5e25fSSatish Balay   }
34449b5e25fSSatish Balay   PetscFunctionReturn(0);
34549b5e25fSSatish Balay }
34649b5e25fSSatish Balay 
3474a2ae208SSatish Balay #undef __FUNCT__
3484a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII"
349b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer)
35049b5e25fSSatish Balay {
35149b5e25fSSatish Balay   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
352fb9695e5SSatish Balay   int               ierr,i,j,bs = a->bs,k,l,bs2=a->bs2;
353fb9695e5SSatish Balay   char              *name;
354f3ef73ceSBarry Smith   PetscViewerFormat format;
35549b5e25fSSatish Balay 
35649b5e25fSSatish Balay   PetscFunctionBegin;
35780fe4e49SBarry Smith   ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
358b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
359456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
360b0a32e0cSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
361fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
36229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matlab format not supported");
363fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
364b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
36549b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
36649b5e25fSSatish Balay       for (j=0; j<bs; j++) {
367b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %d:",i*bs+j);CHKERRQ(ierr);
36849b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
36949b5e25fSSatish Balay           for (l=0; l<bs; l++) {
37049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
37149b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
37262b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g + %g i) ",bs*a->j[k]+l,
37349b5e25fSSatish Balay                       PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
37449b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
37562b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g - %g i) ",bs*a->j[k]+l,
37649b5e25fSSatish Balay                       PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
37749b5e25fSSatish Balay             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
37862b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
37949b5e25fSSatish Balay             }
38049b5e25fSSatish Balay #else
38149b5e25fSSatish Balay             if (a->a[bs2*k + l*bs + j] != 0.0) {
38262b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
38349b5e25fSSatish Balay             }
38449b5e25fSSatish Balay #endif
38549b5e25fSSatish Balay           }
38649b5e25fSSatish Balay         }
387b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
38849b5e25fSSatish Balay       }
38949b5e25fSSatish Balay     }
390b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
39149b5e25fSSatish Balay   } else {
392b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
39349b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
39449b5e25fSSatish Balay       for (j=0; j<bs; j++) {
395b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %d:",i*bs+j);CHKERRQ(ierr);
39649b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
39749b5e25fSSatish Balay           for (l=0; l<bs; l++) {
39849b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
39949b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
40062b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g + %g i) ",bs*a->j[k]+l,
40149b5e25fSSatish Balay                 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
40249b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
40362b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g - %g i) ",bs*a->j[k]+l,
40449b5e25fSSatish Balay                 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
40549b5e25fSSatish Balay             } else {
40662b941d6SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%d, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
40749b5e25fSSatish Balay             }
40849b5e25fSSatish Balay #else
409b0a32e0cSBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
41049b5e25fSSatish Balay #endif
41149b5e25fSSatish Balay           }
41249b5e25fSSatish Balay         }
413b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
41449b5e25fSSatish Balay       }
41549b5e25fSSatish Balay     }
416b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
41749b5e25fSSatish Balay   }
418b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
41949b5e25fSSatish Balay   PetscFunctionReturn(0);
42049b5e25fSSatish Balay }
42149b5e25fSSatish Balay 
4224a2ae208SSatish Balay #undef __FUNCT__
4234a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom"
424b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
42549b5e25fSSatish Balay {
42649b5e25fSSatish Balay   Mat          A = (Mat) Aa;
42749b5e25fSSatish Balay   Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data;
42849b5e25fSSatish Balay   int          row,ierr,i,j,k,l,mbs=a->mbs,color,bs=a->bs,bs2=a->bs2,rank;
42949b5e25fSSatish Balay   PetscReal    xl,yl,xr,yr,x_l,x_r,y_l,y_r;
43049b5e25fSSatish Balay   MatScalar    *aa;
43149b5e25fSSatish Balay   MPI_Comm     comm;
432b0a32e0cSBarry Smith   PetscViewer  viewer;
43349b5e25fSSatish Balay 
43449b5e25fSSatish Balay   PetscFunctionBegin;
43549b5e25fSSatish Balay   /*
43649b5e25fSSatish Balay       This is nasty. If this is called from an originally parallel matrix
43749b5e25fSSatish Balay    then all processes call this,but only the first has the matrix so the
43849b5e25fSSatish Balay    rest should return immediately.
43949b5e25fSSatish Balay   */
44049b5e25fSSatish Balay   ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr);
44149b5e25fSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
44249b5e25fSSatish Balay   if (rank) PetscFunctionReturn(0);
44349b5e25fSSatish Balay 
44449b5e25fSSatish Balay   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
44549b5e25fSSatish Balay 
446b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
447b0a32e0cSBarry Smith   PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");
44849b5e25fSSatish Balay 
44949b5e25fSSatish Balay   /* loop over matrix elements drawing boxes */
450b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
45149b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
45249b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
453c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
45449b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
45549b5e25fSSatish Balay       aa = a->a + j*bs2;
45649b5e25fSSatish Balay       for (k=0; k<bs; k++) {
45749b5e25fSSatish Balay         for (l=0; l<bs; l++) {
45849b5e25fSSatish Balay           if (PetscRealPart(*aa++) >=  0.) continue;
459b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
46049b5e25fSSatish Balay         }
46149b5e25fSSatish Balay       }
46249b5e25fSSatish Balay     }
46349b5e25fSSatish Balay   }
464b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
46549b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
46649b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
467c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
46849b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
46949b5e25fSSatish Balay       aa = a->a + j*bs2;
47049b5e25fSSatish Balay       for (k=0; k<bs; k++) {
47149b5e25fSSatish Balay         for (l=0; l<bs; l++) {
47249b5e25fSSatish Balay           if (PetscRealPart(*aa++) != 0.) continue;
473b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
47449b5e25fSSatish Balay         }
47549b5e25fSSatish Balay       }
47649b5e25fSSatish Balay     }
47749b5e25fSSatish Balay   }
47849b5e25fSSatish Balay 
479b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
48049b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
48149b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
482c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
48349b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
48449b5e25fSSatish Balay       aa = a->a + j*bs2;
48549b5e25fSSatish Balay       for (k=0; k<bs; k++) {
48649b5e25fSSatish Balay         for (l=0; l<bs; l++) {
48749b5e25fSSatish Balay           if (PetscRealPart(*aa++) <= 0.) continue;
488b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
48949b5e25fSSatish Balay         }
49049b5e25fSSatish Balay       }
49149b5e25fSSatish Balay     }
49249b5e25fSSatish Balay   }
49349b5e25fSSatish Balay   PetscFunctionReturn(0);
49449b5e25fSSatish Balay }
49549b5e25fSSatish Balay 
4964a2ae208SSatish Balay #undef __FUNCT__
4974a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw"
498b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer)
49949b5e25fSSatish Balay {
50049b5e25fSSatish Balay   int          ierr;
50149b5e25fSSatish Balay   PetscReal    xl,yl,xr,yr,w,h;
502b0a32e0cSBarry Smith   PetscDraw    draw;
50349b5e25fSSatish Balay   PetscTruth   isnull;
50449b5e25fSSatish Balay 
50549b5e25fSSatish Balay   PetscFunctionBegin;
50649b5e25fSSatish Balay 
507b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
508b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
50949b5e25fSSatish Balay 
51049b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
511c464158bSHong Zhang   xr  = A->m; yr = A->m; h = yr/10.0; w = xr/10.0;
51249b5e25fSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
513b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
514b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
51549b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
51649b5e25fSSatish Balay   PetscFunctionReturn(0);
51749b5e25fSSatish Balay }
51849b5e25fSSatish Balay 
5194a2ae208SSatish Balay #undef __FUNCT__
5204a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ"
521b0a32e0cSBarry Smith int MatView_SeqSBAIJ(Mat A,PetscViewer viewer)
52249b5e25fSSatish Balay {
52349b5e25fSSatish Balay   int        ierr;
52449b5e25fSSatish Balay   PetscTruth issocket,isascii,isbinary,isdraw;
52549b5e25fSSatish Balay 
52649b5e25fSSatish Balay   PetscFunctionBegin;
527b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
528b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
529fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
530fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
53149b5e25fSSatish Balay   if (issocket) {
53229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Socket viewer not supported");
53349b5e25fSSatish Balay   } else if (isascii){
53449b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
53549b5e25fSSatish Balay   } else if (isbinary) {
53649b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_Binary(A,viewer);CHKERRQ(ierr);
53749b5e25fSSatish Balay   } else if (isdraw) {
53849b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr);
53949b5e25fSSatish Balay   } else {
540b7aaefc3SHong Zhang     SETERRQ1(1,"Viewer type %s not supported by SeqSBAIJ matrices",((PetscObject)viewer)->type_name);
54149b5e25fSSatish Balay   }
54249b5e25fSSatish Balay   PetscFunctionReturn(0);
54349b5e25fSSatish Balay }
54449b5e25fSSatish Balay 
54549b5e25fSSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ"
548f15d580aSBarry Smith int MatGetValues_SeqSBAIJ(Mat A,int m,const int im[],int n,const int in[],PetscScalar v[])
54949b5e25fSSatish Balay {
550045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
55149b5e25fSSatish Balay   int        *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
55249b5e25fSSatish Balay   int        *ai = a->i,*ailen = a->ilen;
55349b5e25fSSatish Balay   int        brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2;
55449b5e25fSSatish Balay   MatScalar  *ap,*aa = a->a,zero = 0.0;
55549b5e25fSSatish Balay 
55649b5e25fSSatish Balay   PetscFunctionBegin;
55749b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
55849b5e25fSSatish Balay     row  = im[k]; brow = row/bs;
559590ac198SBarry Smith     if (row < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",row);
560590ac198SBarry Smith     if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",row,A->m-1);
56149b5e25fSSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
56249b5e25fSSatish Balay     nrow = ailen[brow];
56349b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
564590ac198SBarry Smith       if (in[l] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %d",in[l]);
565590ac198SBarry Smith       if (in[l] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[l],A->n-1);
56649b5e25fSSatish Balay       col  = in[l] ;
56749b5e25fSSatish Balay       bcol = col/bs;
56849b5e25fSSatish Balay       cidx = col%bs;
56949b5e25fSSatish Balay       ridx = row%bs;
57049b5e25fSSatish Balay       high = nrow;
57149b5e25fSSatish Balay       low  = 0; /* assume unsorted */
57249b5e25fSSatish Balay       while (high-low > 5) {
57349b5e25fSSatish Balay         t = (low+high)/2;
57449b5e25fSSatish Balay         if (rp[t] > bcol) high = t;
57549b5e25fSSatish Balay         else             low  = t;
57649b5e25fSSatish Balay       }
57749b5e25fSSatish Balay       for (i=low; i<high; i++) {
57849b5e25fSSatish Balay         if (rp[i] > bcol) break;
57949b5e25fSSatish Balay         if (rp[i] == bcol) {
58049b5e25fSSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
58149b5e25fSSatish Balay           goto finished;
58249b5e25fSSatish Balay         }
58349b5e25fSSatish Balay       }
58449b5e25fSSatish Balay       *v++ = zero;
58549b5e25fSSatish Balay       finished:;
58649b5e25fSSatish Balay     }
58749b5e25fSSatish Balay   }
58849b5e25fSSatish Balay   PetscFunctionReturn(0);
58949b5e25fSSatish Balay }
59049b5e25fSSatish Balay 
59149b5e25fSSatish Balay 
5924a2ae208SSatish Balay #undef __FUNCT__
5934a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ"
594f15d580aSBarry Smith int MatSetValuesBlocked_SeqSBAIJ(Mat A,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode is)
59549b5e25fSSatish Balay {
5960880e062SHong Zhang   Mat_SeqSBAIJ    *a = (Mat_SeqSBAIJ*)A->data;
5970880e062SHong Zhang   int             *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
5980880e062SHong Zhang   int             *imax=a->imax,*ai=a->i,*ailen=a->ilen;
5990880e062SHong Zhang   int             *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=a->bs,stepval,ierr;
6000880e062SHong Zhang   PetscTruth      roworiented=a->roworiented;
601f15d580aSBarry Smith   const MatScalar *value = v;
602f15d580aSBarry Smith   MatScalar       *ap,*aa = a->a,*bap;
6030880e062SHong Zhang 
60449b5e25fSSatish Balay   PetscFunctionBegin;
6050880e062SHong Zhang   if (roworiented) {
6060880e062SHong Zhang     stepval = (n-1)*bs;
6070880e062SHong Zhang   } else {
6080880e062SHong Zhang     stepval = (m-1)*bs;
6090880e062SHong Zhang   }
6100880e062SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
6110880e062SHong Zhang     row  = im[k];
6120880e062SHong Zhang     if (row < 0) continue;
6130880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
614590ac198SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",row,a->mbs-1);
6150880e062SHong Zhang #endif
6160880e062SHong Zhang     rp   = aj + ai[row];
6170880e062SHong Zhang     ap   = aa + bs2*ai[row];
6180880e062SHong Zhang     rmax = imax[row];
6190880e062SHong Zhang     nrow = ailen[row];
6200880e062SHong Zhang     low  = 0;
6210880e062SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
6220880e062SHong Zhang       if (in[l] < 0) continue;
6230880e062SHong Zhang #if defined(PETSC_USE_BOPT_g)
624590ac198SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",col,a->nbs-1);
6250880e062SHong Zhang #endif
6260880e062SHong Zhang       col = in[l];
6270880e062SHong Zhang       if (col < row) continue; /* ignore lower triangular block */
6280880e062SHong Zhang       if (roworiented) {
6290880e062SHong Zhang         value = v + k*(stepval+bs)*bs + l*bs;
6300880e062SHong Zhang       } else {
6310880e062SHong Zhang         value = v + l*(stepval+bs)*bs + k*bs;
6320880e062SHong Zhang       }
6330880e062SHong Zhang       if (!sorted) low = 0; high = nrow;
6340880e062SHong Zhang       while (high-low > 7) {
6350880e062SHong Zhang         t = (low+high)/2;
6360880e062SHong Zhang         if (rp[t] > col) high = t;
6370880e062SHong Zhang         else             low  = t;
6380880e062SHong Zhang       }
6390880e062SHong Zhang       for (i=low; i<high; i++) {
6400880e062SHong Zhang         if (rp[i] > col) break;
6410880e062SHong Zhang         if (rp[i] == col) {
6420880e062SHong Zhang           bap  = ap +  bs2*i;
6430880e062SHong Zhang           if (roworiented) {
6440880e062SHong Zhang             if (is == ADD_VALUES) {
6450880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6460880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6470880e062SHong Zhang                   bap[jj] += *value++;
6480880e062SHong Zhang                 }
6490880e062SHong Zhang               }
6500880e062SHong Zhang             } else {
6510880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6520880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6530880e062SHong Zhang                   bap[jj] = *value++;
6540880e062SHong Zhang                 }
6550880e062SHong Zhang               }
6560880e062SHong Zhang             }
6570880e062SHong Zhang           } else {
6580880e062SHong Zhang             if (is == ADD_VALUES) {
6590880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6600880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6610880e062SHong Zhang                   *bap++ += *value++;
6620880e062SHong Zhang                 }
6630880e062SHong Zhang               }
6640880e062SHong Zhang             } else {
6650880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6660880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6670880e062SHong Zhang                   *bap++  = *value++;
6680880e062SHong Zhang                 }
6690880e062SHong Zhang               }
6700880e062SHong Zhang             }
6710880e062SHong Zhang           }
6720880e062SHong Zhang           goto noinsert2;
6730880e062SHong Zhang         }
6740880e062SHong Zhang       }
6750880e062SHong Zhang       if (nonew == 1) goto noinsert2;
6760880e062SHong Zhang       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix");
6770880e062SHong Zhang       if (nrow >= rmax) {
6780880e062SHong Zhang         /* there is no extra room in row, therefore enlarge */
6790880e062SHong Zhang         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
6800880e062SHong Zhang         MatScalar *new_a;
6810880e062SHong Zhang 
6820880e062SHong Zhang         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix");
6830880e062SHong Zhang 
6840880e062SHong Zhang         /* malloc new storage space */
6850880e062SHong Zhang         len     = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int);
6860880e062SHong Zhang 	ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr);
6870880e062SHong Zhang         new_j   = (int*)(new_a + bs2*new_nz);
6880880e062SHong Zhang         new_i   = new_j + new_nz;
6890880e062SHong Zhang 
6900880e062SHong Zhang         /* copy over old data into new slots */
6910880e062SHong Zhang         for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];}
6920880e062SHong Zhang         for (ii=row+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;}
6930880e062SHong Zhang         ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int));CHKERRQ(ierr);
6940880e062SHong Zhang         len  = (new_nz - CHUNKSIZE - ai[row] - nrow);
6950880e062SHong Zhang         ierr = PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(int));CHKERRQ(ierr);
6960880e062SHong Zhang         ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr);
6970880e062SHong Zhang         ierr = PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr);
6980880e062SHong Zhang         ierr = PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);
6990880e062SHong Zhang         /* free up old matrix storage */
7000880e062SHong Zhang         ierr = PetscFree(a->a);CHKERRQ(ierr);
7010880e062SHong Zhang         if (!a->singlemalloc) {
7020880e062SHong Zhang           ierr = PetscFree(a->i);CHKERRQ(ierr);
7030880e062SHong Zhang           ierr = PetscFree(a->j);CHKERRQ(ierr);
7040880e062SHong Zhang         }
7050880e062SHong Zhang         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
7060880e062SHong Zhang         a->singlemalloc = PETSC_TRUE;
7070880e062SHong Zhang 
7080880e062SHong Zhang         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
7090880e062SHong Zhang         rmax = imax[row] = imax[row] + CHUNKSIZE;
7100880e062SHong Zhang         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar)));
7110880e062SHong Zhang         a->s_maxnz += bs2*CHUNKSIZE;
7120880e062SHong Zhang         a->reallocs++;
7130880e062SHong Zhang         a->s_nz++;
7140880e062SHong Zhang       }
7150880e062SHong Zhang       N = nrow++ - 1;
7160880e062SHong Zhang       /* shift up all the later entries in this row */
7170880e062SHong Zhang       for (ii=N; ii>=i; ii--) {
7180880e062SHong Zhang         rp[ii+1] = rp[ii];
7190880e062SHong Zhang         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
7200880e062SHong Zhang       }
7210880e062SHong Zhang       if (N >= i) {
7220880e062SHong Zhang         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
7230880e062SHong Zhang       }
7240880e062SHong Zhang       rp[i] = col;
7250880e062SHong Zhang       bap   = ap +  bs2*i;
7260880e062SHong Zhang       if (roworiented) {
7270880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
7280880e062SHong Zhang           for (jj=ii; jj<bs2; jj+=bs) {
7290880e062SHong Zhang             bap[jj] = *value++;
7300880e062SHong Zhang           }
7310880e062SHong Zhang         }
7320880e062SHong Zhang       } else {
7330880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
7340880e062SHong Zhang           for (jj=0; jj<bs; jj++) {
7350880e062SHong Zhang             *bap++  = *value++;
7360880e062SHong Zhang           }
7370880e062SHong Zhang         }
7380880e062SHong Zhang       }
7390880e062SHong Zhang       noinsert2:;
7400880e062SHong Zhang       low = i;
7410880e062SHong Zhang     }
7420880e062SHong Zhang     ailen[row] = nrow;
7430880e062SHong Zhang   }
7440880e062SHong Zhang   PetscFunctionReturn(0);
74549b5e25fSSatish Balay }
74649b5e25fSSatish Balay 
7474a2ae208SSatish Balay #undef __FUNCT__
7484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ"
74949b5e25fSSatish Balay int MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode)
75049b5e25fSSatish Balay {
75149b5e25fSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
75249b5e25fSSatish Balay   int        fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
753c464158bSHong Zhang   int        m = A->m,*ip,N,*ailen = a->ilen;
75449b5e25fSSatish Balay   int        mbs = a->mbs,bs2 = a->bs2,rmax = 0,ierr;
75549b5e25fSSatish Balay   MatScalar  *aa = a->a,*ap;
75627f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
757cf4441caSHong Zhang   PetscTruth   flag;
758cf4441caSHong Zhang #endif
75949b5e25fSSatish Balay 
76049b5e25fSSatish Balay   PetscFunctionBegin;
76149b5e25fSSatish Balay   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
76249b5e25fSSatish Balay 
76349b5e25fSSatish Balay   if (m) rmax = ailen[0];
76449b5e25fSSatish Balay   for (i=1; i<mbs; i++) {
76549b5e25fSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
76649b5e25fSSatish Balay     fshift += imax[i-1] - ailen[i-1];
76749b5e25fSSatish Balay     rmax   = PetscMax(rmax,ailen[i]);
76849b5e25fSSatish Balay     if (fshift) {
76949b5e25fSSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
77049b5e25fSSatish Balay       N = ailen[i];
77149b5e25fSSatish Balay       for (j=0; j<N; j++) {
77249b5e25fSSatish Balay         ip[j-fshift] = ip[j];
77349b5e25fSSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
77449b5e25fSSatish Balay       }
77549b5e25fSSatish Balay     }
77649b5e25fSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
77749b5e25fSSatish Balay   }
77849b5e25fSSatish Balay   if (mbs) {
77949b5e25fSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
78049b5e25fSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
78149b5e25fSSatish Balay   }
78249b5e25fSSatish Balay   /* reset ilen and imax for each row */
78349b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
78449b5e25fSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
78549b5e25fSSatish Balay   }
78649b5e25fSSatish Balay   a->s_nz = ai[mbs];
78749b5e25fSSatish Balay 
788b424e231SHong Zhang   /* diagonals may have moved, reset it */
789b424e231SHong Zhang   if (a->diag) {
790b424e231SHong Zhang     ierr = PetscMemcpy(a->diag,ai,(mbs+1)*sizeof(int));CHKERRQ(ierr);
79149b5e25fSSatish Balay   }
792b0a32e0cSBarry Smith   PetscLogInfo(A,"MatAssemblyEnd_SeqSBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n",
793c464158bSHong Zhang            m,A->m,a->bs,fshift*bs2,a->s_nz*bs2);
794b0a32e0cSBarry Smith   PetscLogInfo(A,"MatAssemblyEnd_SeqSBAIJ:Number of mallocs during MatSetValues is %d\n",
79549b5e25fSSatish Balay            a->reallocs);
796b0a32e0cSBarry Smith   PetscLogInfo(A,"MatAssemblyEnd_SeqSBAIJ:Most nonzeros blocks in any row is %d\n",rmax);
79749b5e25fSSatish Balay   a->reallocs          = 0;
79849b5e25fSSatish Balay   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
79949b5e25fSSatish Balay 
800cf4441caSHong Zhang #if defined(PETSC_HAVE_SPOOLES)
8012c535e4dSHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
802cf4441caSHong Zhang   if (flag) { ierr = MatUseSpooles_SeqSBAIJ(A);CHKERRQ(ierr); }
803cf4441caSHong Zhang #endif
80427f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
80527f1aa60SHong Zhang   ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
80627f1aa60SHong Zhang   if (flag) { ierr = MatUseMUMPS_MPIAIJ(A);CHKERRQ(ierr); }
80727f1aa60SHong Zhang #endif
808cf4441caSHong Zhang 
80949b5e25fSSatish Balay   PetscFunctionReturn(0);
81049b5e25fSSatish Balay }
81149b5e25fSSatish Balay 
81249b5e25fSSatish Balay /*
81349b5e25fSSatish Balay    This function returns an array of flags which indicate the locations of contiguous
81449b5e25fSSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
81549b5e25fSSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
81649b5e25fSSatish Balay    Assume: sizes should be long enough to hold all the values.
81749b5e25fSSatish Balay */
8184a2ae208SSatish Balay #undef __FUNCT__
8194a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks"
820db2f66daSBarry Smith int MatZeroRows_SeqSBAIJ_Check_Blocks(int idx[],int n,int bs,int sizes[], int *bs_max)
82149b5e25fSSatish Balay {
82249b5e25fSSatish Balay   int        i,j,k,row;
82349b5e25fSSatish Balay   PetscTruth flg;
82449b5e25fSSatish Balay 
82549b5e25fSSatish Balay   PetscFunctionBegin;
82649b5e25fSSatish Balay   for (i=0,j=0; i<n; j++) {
82749b5e25fSSatish Balay     row = idx[i];
82849b5e25fSSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
82949b5e25fSSatish Balay       sizes[j] = 1;
83049b5e25fSSatish Balay       i++;
83149b5e25fSSatish Balay     } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */
83249b5e25fSSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
83349b5e25fSSatish Balay       i++;
83449b5e25fSSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
83549b5e25fSSatish Balay       flg = PETSC_TRUE;
83649b5e25fSSatish Balay       for (k=1; k<bs; k++) {
83749b5e25fSSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
83849b5e25fSSatish Balay           flg = PETSC_FALSE;
83949b5e25fSSatish Balay           break;
84049b5e25fSSatish Balay         }
84149b5e25fSSatish Balay       }
84249b5e25fSSatish Balay       if (flg == PETSC_TRUE) { /* No break in the bs */
84349b5e25fSSatish Balay         sizes[j] = bs;
84449b5e25fSSatish Balay         i+= bs;
84549b5e25fSSatish Balay       } else {
84649b5e25fSSatish Balay         sizes[j] = 1;
84749b5e25fSSatish Balay         i++;
84849b5e25fSSatish Balay       }
84949b5e25fSSatish Balay     }
85049b5e25fSSatish Balay   }
85149b5e25fSSatish Balay   *bs_max = j;
85249b5e25fSSatish Balay   PetscFunctionReturn(0);
85349b5e25fSSatish Balay }
85449b5e25fSSatish Balay 
8554a2ae208SSatish Balay #undef __FUNCT__
8564a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ"
857268466fbSBarry Smith int MatZeroRows_SeqSBAIJ(Mat A,IS is,const PetscScalar *diag)
85849b5e25fSSatish Balay {
85949b5e25fSSatish Balay   PetscFunctionBegin;
860c0f24835SHong Zhang   SETERRQ(PETSC_ERR_SUP,"No support for this function yet");
86149b5e25fSSatish Balay }
86249b5e25fSSatish Balay 
86349b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
86449b5e25fSSatish Balay    Any a(i,j) with i>j input by user is ingored.
86549b5e25fSSatish Balay */
86649b5e25fSSatish Balay 
8674a2ae208SSatish Balay #undef __FUNCT__
8684a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ"
869f15d580aSBarry Smith int MatSetValues_SeqSBAIJ(Mat A,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode is)
87049b5e25fSSatish Balay {
87149b5e25fSSatish Balay   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
87249b5e25fSSatish Balay   int         *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
87349b5e25fSSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
87449b5e25fSSatish Balay   int         *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol;
87549b5e25fSSatish Balay   int         ridx,cidx,bs2=a->bs2,ierr;
87649b5e25fSSatish Balay   MatScalar   *ap,value,*aa=a->a,*bap;
87749b5e25fSSatish Balay 
87849b5e25fSSatish Balay   PetscFunctionBegin;
87949b5e25fSSatish Balay 
88049b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
88149b5e25fSSatish Balay     row  = im[k];       /* row number */
88249b5e25fSSatish Balay     brow = row/bs;      /* block row number */
88349b5e25fSSatish Balay     if (row < 0) continue;
88449b5e25fSSatish Balay #if defined(PETSC_USE_BOPT_g)
885590ac198SBarry Smith     if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",row,A->m-1);
88649b5e25fSSatish Balay #endif
88749b5e25fSSatish Balay     rp   = aj + ai[brow]; /*ptr to beginning of column value of the row block*/
88849b5e25fSSatish Balay     ap   = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/
88949b5e25fSSatish Balay     rmax = imax[brow];  /* maximum space allocated for this row */
89049b5e25fSSatish Balay     nrow = ailen[brow]; /* actual length of this row */
89149b5e25fSSatish Balay     low  = 0;
89249b5e25fSSatish Balay 
89349b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
89449b5e25fSSatish Balay       if (in[l] < 0) continue;
89549b5e25fSSatish Balay #if defined(PETSC_USE_BOPT_g)
896590ac198SBarry Smith       if (in[l] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[l],A->m-1);
89749b5e25fSSatish Balay #endif
89849b5e25fSSatish Balay       col = in[l];
89949b5e25fSSatish Balay       bcol = col/bs;              /* block col number */
90049b5e25fSSatish Balay 
90149b5e25fSSatish Balay       if (brow <= bcol){
90249b5e25fSSatish Balay         ridx = row % bs; cidx = col % bs; /*row and col index inside the block */
9038549e402SHong Zhang         if ((brow==bcol && ridx<=cidx) || (brow<bcol)){
90449b5e25fSSatish Balay           /* element value a(k,l) */
90549b5e25fSSatish Balay           if (roworiented) {
90649b5e25fSSatish Balay             value = v[l + k*n];
90749b5e25fSSatish Balay           } else {
90849b5e25fSSatish Balay             value = v[k + l*m];
90949b5e25fSSatish Balay           }
91049b5e25fSSatish Balay 
91149b5e25fSSatish Balay           /* move pointer bap to a(k,l) quickly and add/insert value */
91249b5e25fSSatish Balay           if (!sorted) low = 0; high = nrow;
91349b5e25fSSatish Balay           while (high-low > 7) {
91449b5e25fSSatish Balay             t = (low+high)/2;
91549b5e25fSSatish Balay             if (rp[t] > bcol) high = t;
91649b5e25fSSatish Balay             else              low  = t;
91749b5e25fSSatish Balay           }
91849b5e25fSSatish Balay           for (i=low; i<high; i++) {
91949b5e25fSSatish Balay             /* printf("The loop of i=low.., rp[%d]=%d\n",i,rp[i]); */
92049b5e25fSSatish Balay             if (rp[i] > bcol) break;
92149b5e25fSSatish Balay             if (rp[i] == bcol) {
92249b5e25fSSatish Balay               bap  = ap +  bs2*i + bs*cidx + ridx;
92349b5e25fSSatish Balay               if (is == ADD_VALUES) *bap += value;
92449b5e25fSSatish Balay               else                  *bap  = value;
9258549e402SHong Zhang               /* for diag block, add/insert its symmetric element a(cidx,ridx) */
9268549e402SHong Zhang               if (brow == bcol && ridx < cidx){
9278549e402SHong Zhang                 bap  = ap +  bs2*i + bs*ridx + cidx;
9288549e402SHong Zhang                 if (is == ADD_VALUES) *bap += value;
9298549e402SHong Zhang                 else                  *bap  = value;
9308549e402SHong Zhang               }
93149b5e25fSSatish Balay               goto noinsert1;
93249b5e25fSSatish Balay             }
93349b5e25fSSatish Balay           }
93449b5e25fSSatish Balay 
93549b5e25fSSatish Balay       if (nonew == 1) goto noinsert1;
93629bbc08cSBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix");
93749b5e25fSSatish Balay       if (nrow >= rmax) {
93849b5e25fSSatish Balay         /* there is no extra room in row, therefore enlarge */
93949b5e25fSSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
94049b5e25fSSatish Balay         MatScalar *new_a;
94149b5e25fSSatish Balay 
94229bbc08cSBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix");
94349b5e25fSSatish Balay 
94449b5e25fSSatish Balay         /* Malloc new storage space */
94549b5e25fSSatish Balay         len   = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int);
94682502324SSatish Balay         ierr  = PetscMalloc(len,&new_a);CHKERRQ(ierr);
94749b5e25fSSatish Balay         new_j = (int*)(new_a + bs2*new_nz);
94849b5e25fSSatish Balay         new_i = new_j + new_nz;
94949b5e25fSSatish Balay 
95049b5e25fSSatish Balay         /* copy over old data into new slots */
95149b5e25fSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];}
95249b5e25fSSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;}
95349b5e25fSSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr);
95449b5e25fSSatish Balay         len  = (new_nz - CHUNKSIZE - ai[brow] - nrow);
95549b5e25fSSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr);
95649b5e25fSSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr);
95749b5e25fSSatish Balay         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr);
95849b5e25fSSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);
95949b5e25fSSatish Balay         /* free up old matrix storage */
96049b5e25fSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);
96149b5e25fSSatish Balay         if (!a->singlemalloc) {
96249b5e25fSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr);
96349b5e25fSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);
96449b5e25fSSatish Balay         }
96549b5e25fSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
96649b5e25fSSatish Balay         a->singlemalloc = PETSC_TRUE;
96749b5e25fSSatish Balay 
96849b5e25fSSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
96949b5e25fSSatish Balay         rmax = imax[brow] = imax[brow] + CHUNKSIZE;
970b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar)));
97149b5e25fSSatish Balay         a->s_maxnz += bs2*CHUNKSIZE;
97249b5e25fSSatish Balay         a->reallocs++;
97349b5e25fSSatish Balay         a->s_nz++;
97449b5e25fSSatish Balay       }
97549b5e25fSSatish Balay 
97649b5e25fSSatish Balay       N = nrow++ - 1;
97749b5e25fSSatish Balay       /* shift up all the later entries in this row */
97849b5e25fSSatish Balay       for (ii=N; ii>=i; ii--) {
97949b5e25fSSatish Balay         rp[ii+1] = rp[ii];
98049b5e25fSSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
98149b5e25fSSatish Balay       }
98249b5e25fSSatish Balay       if (N>=i) {
98349b5e25fSSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
98449b5e25fSSatish Balay       }
98549b5e25fSSatish Balay       rp[i]                      = bcol;
98649b5e25fSSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
98749b5e25fSSatish Balay       noinsert1:;
98849b5e25fSSatish Balay       low = i;
98949b5e25fSSatish Balay       /* } */
9908549e402SHong Zhang         }
99149b5e25fSSatish Balay       } /* end of if .. if..  */
99249b5e25fSSatish Balay     }                     /* end of loop over added columns */
99349b5e25fSSatish Balay     ailen[brow] = nrow;
99449b5e25fSSatish Balay   }                       /* end of loop over added rows */
99549b5e25fSSatish Balay 
99649b5e25fSSatish Balay   PetscFunctionReturn(0);
99749b5e25fSSatish Balay }
99849b5e25fSSatish Balay 
99915e8a5b3SHong Zhang extern int MatCholeskyFactorSymbolic_SeqSBAIJ(Mat,IS,MatFactorInfo*,Mat*);
100015e8a5b3SHong Zhang extern int MatCholeskyFactor_SeqSBAIJ(Mat,IS,MatFactorInfo*);
100149b5e25fSSatish Balay extern int MatIncreaseOverlap_SeqSBAIJ(Mat,int,IS*,int);
100249b5e25fSSatish Balay extern int MatGetSubMatrix_SeqSBAIJ(Mat,IS,IS,int,MatReuse,Mat*);
1003268466fbSBarry Smith extern int MatGetSubMatrices_SeqSBAIJ(Mat,int,const IS[],const IS[],MatReuse,Mat*[]);
100449b5e25fSSatish Balay extern int MatMultTranspose_SeqSBAIJ(Mat,Vec,Vec);
100549b5e25fSSatish Balay extern int MatMultTransposeAdd_SeqSBAIJ(Mat,Vec,Vec,Vec);
1006268466fbSBarry Smith extern int MatScale_SeqSBAIJ(const PetscScalar*,Mat);
100749b5e25fSSatish Balay extern int MatNorm_SeqSBAIJ(Mat,NormType,PetscReal *);
100849b5e25fSSatish Balay extern int MatEqual_SeqSBAIJ(Mat,Mat,PetscTruth*);
100949b5e25fSSatish Balay extern int MatGetDiagonal_SeqSBAIJ(Mat,Vec);
101049b5e25fSSatish Balay extern int MatDiagonalScale_SeqSBAIJ(Mat,Vec,Vec);
101149b5e25fSSatish Balay extern int MatGetInfo_SeqSBAIJ(Mat,MatInfoType,MatInfo *);
101249b5e25fSSatish Balay extern int MatZeroEntries_SeqSBAIJ(Mat);
101313a02c98SHong Zhang extern int MatGetRowMax_SeqSBAIJ(Mat,Vec);
101449b5e25fSSatish Balay 
101549b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_N(Mat,Vec,Vec);
101649b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_1(Mat,Vec,Vec);
101749b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_2(Mat,Vec,Vec);
101849b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_3(Mat,Vec,Vec);
101949b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_4(Mat,Vec,Vec);
102049b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_5(Mat,Vec,Vec);
102149b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_6(Mat,Vec,Vec);
102249b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_7(Mat,Vec,Vec);
102349b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_7(Mat,Vec,Vec);
102449b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_6(Mat,Vec,Vec);
102549b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_5(Mat,Vec,Vec);
102649b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_4(Mat,Vec,Vec);
102749b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_3(Mat,Vec,Vec);
102849b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_2(Mat,Vec,Vec);
102949b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_1(Mat,Vec,Vec);
103049b5e25fSSatish Balay 
1031d59c15a7SBarry Smith extern int MatSolves_SeqSBAIJ_1(Mat,Vecs,Vecs);
1032d59c15a7SBarry Smith 
103307f98182SSatish Balay extern int MatSolve_SeqSBAIJ_1_NaturalOrdering(Mat,Vec,Vec);
103407f98182SSatish Balay extern int MatSolve_SeqSBAIJ_2_NaturalOrdering(Mat,Vec,Vec);
103507f98182SSatish Balay extern int MatSolve_SeqSBAIJ_3_NaturalOrdering(Mat,Vec,Vec);
103607f98182SSatish Balay extern int MatSolve_SeqSBAIJ_4_NaturalOrdering(Mat,Vec,Vec);
103707f98182SSatish Balay extern int MatSolve_SeqSBAIJ_5_NaturalOrdering(Mat,Vec,Vec);
103807f98182SSatish Balay extern int MatSolve_SeqSBAIJ_6_NaturalOrdering(Mat,Vec,Vec);
103907f98182SSatish Balay extern int MatSolve_SeqSBAIJ_7_NaturalOrdering(Mat,Vec,Vec);
104007f98182SSatish Balay extern int MatSolve_SeqSBAIJ_N_NaturalOrdering(Mat,Vec,Vec);
104107f98182SSatish Balay 
10425f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat,Mat*);
10435f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat,Mat*);
10445f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat,Mat*);
10455f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat,Mat*);
10465f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat,Mat*);
10475f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat,Mat*);
10485f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat,Mat*);
104957d5e339SHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat,Mat*);
10503e0d88b5SBarry Smith extern int MatGetInertia_SeqSBAIJ(Mat,int*,int*,int*);
105149b5e25fSSatish Balay 
105249b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_1(Mat,Vec,Vec);
105349b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_2(Mat,Vec,Vec);
105449b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_3(Mat,Vec,Vec);
105549b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_4(Mat,Vec,Vec);
105649b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_5(Mat,Vec,Vec);
105749b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_6(Mat,Vec,Vec);
105849b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_7(Mat,Vec,Vec);
105949b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_N(Mat,Vec,Vec);
106049b5e25fSSatish Balay 
106149b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_1(Mat,Vec,Vec,Vec);
106249b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_2(Mat,Vec,Vec,Vec);
106349b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_3(Mat,Vec,Vec,Vec);
106449b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_4(Mat,Vec,Vec,Vec);
106549b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_5(Mat,Vec,Vec,Vec);
106649b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_6(Mat,Vec,Vec,Vec);
106749b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_7(Mat,Vec,Vec,Vec);
106849b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_N(Mat,Vec,Vec,Vec);
106949b5e25fSSatish Balay 
10704d101231SSatish Balay #ifdef HAVE_MatICCFactor
10711a3463dfSHong Zhang /* modefied from MatILUFactor_SeqSBAIJ, needs further work!  */
10724a2ae208SSatish Balay #undef __FUNCT__
10734d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ"
107415e8a5b3SHong Zhang int MatICCFactor_SeqSBAIJ(Mat inA,IS row,MatFactorInfo *info)
107549b5e25fSSatish Balay {
10764ccecd49SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data;
107749b5e25fSSatish Balay   Mat         outA;
107849b5e25fSSatish Balay   int         ierr;
107949b5e25fSSatish Balay   PetscTruth  row_identity,col_identity;
108049b5e25fSSatish Balay 
108149b5e25fSSatish Balay   PetscFunctionBegin;
10821a3463dfSHong Zhang   /*
108329bbc08cSBarry Smith   if (level != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
108449b5e25fSSatish Balay   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
108549b5e25fSSatish Balay   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
108649b5e25fSSatish Balay   if (!row_identity || !col_identity) {
108729bbc08cSBarry Smith     SETERRQ(1,"Row and column permutations must be identity for in-place ICC");
108849b5e25fSSatish Balay   }
10891a3463dfSHong Zhang   */
109049b5e25fSSatish Balay 
109149b5e25fSSatish Balay   outA          = inA;
10921260e1f8SHong Zhang   inA->factor   = FACTOR_CHOLESKY;
109349b5e25fSSatish Balay 
109449b5e25fSSatish Balay   if (!a->diag) {
10951a3463dfSHong Zhang     ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr);
109649b5e25fSSatish Balay   }
109749b5e25fSSatish Balay   /*
109849b5e25fSSatish Balay       Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver
109949b5e25fSSatish Balay       for ILU(0) factorization with natural ordering
110049b5e25fSSatish Balay   */
110149b5e25fSSatish Balay   switch (a->bs) {
110249b5e25fSSatish Balay   case 1:
11030fe9e5beSBarry Smith     inA->ops->solve            = MatSolve_SeqSBAIJ_1_NaturalOrdering;
110407f98182SSatish Balay     inA->ops->solvetranspose   = MatSolve_SeqSBAIJ_1_NaturalOrdering;
1105d59c15a7SBarry Smith     inA->ops->solves           = MatSolves_SeqSBAIJ_1;
11064d101231SSatish Balay     PetscLoginfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering solvetrans BS=1\n");
110749b5e25fSSatish Balay   case 2:
11081a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
11091a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_2_NaturalOrdering;
11101a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_2_NaturalOrdering;
11114d101231SSatish Balay     PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=2\n");
111249b5e25fSSatish Balay     break;
111349b5e25fSSatish Balay   case 3:
11141a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
11151a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_3_NaturalOrdering;
11161a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_3_NaturalOrdering;
11174d101231SSatish Balay     PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=3\n");
111849b5e25fSSatish Balay     break;
111949b5e25fSSatish Balay   case 4:
11201a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
11211a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_4_NaturalOrdering;
11221a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_4_NaturalOrdering;
11234d101231SSatish Balay     PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=4\n");
112449b5e25fSSatish Balay     break;
112549b5e25fSSatish Balay   case 5:
11261a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
11271a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_5_NaturalOrdering;
11281a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_5_NaturalOrdering;
11294d101231SSatish Balay     PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=5\n");
113049b5e25fSSatish Balay     break;
113149b5e25fSSatish Balay   case 6:
11321a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
11331a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_6_NaturalOrdering;
11341a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_6_NaturalOrdering;
11354d101231SSatish Balay     PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=6\n");
113649b5e25fSSatish Balay     break;
113749b5e25fSSatish Balay   case 7:
11381a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
11391a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_7_NaturalOrdering;
11401a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_7_NaturalOrdering;
11414d101231SSatish Balay     PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=7\n");
114249b5e25fSSatish Balay     break;
114349b5e25fSSatish Balay   default:
114449b5e25fSSatish Balay     a->row        = row;
11451a3463dfSHong Zhang     a->icol       = col;
114649b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
114749b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
114849b5e25fSSatish Balay 
114949b5e25fSSatish Balay     /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
115049b5e25fSSatish Balay     ierr = ISInvertPermutation(col,PETSC_DECIDE, &(a->icol));CHKERRQ(ierr);
1151b0a32e0cSBarry Smith     PetscLogObjectParent(inA,a->icol);
115249b5e25fSSatish Balay 
115349b5e25fSSatish Balay     if (!a->solve_work) {
115487828ca2SBarry Smith       ierr = PetscMalloc((A->m+a->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
115587828ca2SBarry Smith       PetscLogObjectMemory(inA,(A->m+a->bs)*sizeof(PetscScalar));
115649b5e25fSSatish Balay     }
115749b5e25fSSatish Balay   }
115849b5e25fSSatish Balay 
11591a3463dfSHong Zhang   ierr = MatCholeskyFactorNumeric(inA,&outA);CHKERRQ(ierr);
116049b5e25fSSatish Balay 
116149b5e25fSSatish Balay   PetscFunctionReturn(0);
116249b5e25fSSatish Balay }
1163950f1e5bSHong Zhang #endif
1164950f1e5bSHong Zhang 
11654a2ae208SSatish Balay #undef __FUNCT__
11664a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_SeqSBAIJ"
116749b5e25fSSatish Balay int MatPrintHelp_SeqSBAIJ(Mat A)
116849b5e25fSSatish Balay {
116949b5e25fSSatish Balay   static PetscTruth called = PETSC_FALSE;
117049b5e25fSSatish Balay   MPI_Comm          comm = A->comm;
117149b5e25fSSatish Balay   int               ierr;
117249b5e25fSSatish Balay 
117349b5e25fSSatish Balay   PetscFunctionBegin;
117449b5e25fSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
117549b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATSEQSBAIJ and MATMPISBAIJ matrix formats (the defaults):\n");CHKERRQ(ierr);
117649b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_block_size <block_size>\n");CHKERRQ(ierr);
117749b5e25fSSatish Balay   PetscFunctionReturn(0);
117849b5e25fSSatish Balay }
117949b5e25fSSatish Balay 
118049b5e25fSSatish Balay EXTERN_C_BEGIN
11814a2ae208SSatish Balay #undef __FUNCT__
11824a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ"
118349b5e25fSSatish Balay int MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,int *indices)
118449b5e25fSSatish Balay {
1185045c9aa0SHong Zhang   Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data;
118649b5e25fSSatish Balay   int         i,nz,n;
118749b5e25fSSatish Balay 
118849b5e25fSSatish Balay   PetscFunctionBegin;
1189045c9aa0SHong Zhang   nz = baij->s_maxnz;
1190c464158bSHong Zhang   n  = mat->n;
119149b5e25fSSatish Balay   for (i=0; i<nz; i++) {
119249b5e25fSSatish Balay     baij->j[i] = indices[i];
119349b5e25fSSatish Balay   }
1194045c9aa0SHong Zhang   baij->s_nz = nz;
119549b5e25fSSatish Balay   for (i=0; i<n; i++) {
119649b5e25fSSatish Balay     baij->ilen[i] = baij->imax[i];
119749b5e25fSSatish Balay   }
119849b5e25fSSatish Balay 
119949b5e25fSSatish Balay   PetscFunctionReturn(0);
120049b5e25fSSatish Balay }
120149b5e25fSSatish Balay EXTERN_C_END
120249b5e25fSSatish Balay 
12034a2ae208SSatish Balay #undef __FUNCT__
12044a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices"
120549b5e25fSSatish Balay /*@
120619585528SSatish Balay     MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
120749b5e25fSSatish Balay        in the matrix.
120849b5e25fSSatish Balay 
120949b5e25fSSatish Balay   Input Parameters:
121019585528SSatish Balay +  mat     - the SeqSBAIJ matrix
121149b5e25fSSatish Balay -  indices - the column indices
121249b5e25fSSatish Balay 
121349b5e25fSSatish Balay   Level: advanced
121449b5e25fSSatish Balay 
121549b5e25fSSatish Balay   Notes:
121649b5e25fSSatish Balay     This can be called if you have precomputed the nonzero structure of the
121749b5e25fSSatish Balay   matrix and want to provide it to the matrix object to improve the performance
121849b5e25fSSatish Balay   of the MatSetValues() operation.
121949b5e25fSSatish Balay 
122049b5e25fSSatish Balay     You MUST have set the correct numbers of nonzeros per row in the call to
122119585528SSatish Balay   MatCreateSeqSBAIJ().
122249b5e25fSSatish Balay 
1223ab9f2c04SSatish Balay     MUST be called before any calls to MatSetValues()
122449b5e25fSSatish Balay 
1225ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ
122649b5e25fSSatish Balay @*/
122749b5e25fSSatish Balay int MatSeqSBAIJSetColumnIndices(Mat mat,int *indices)
122849b5e25fSSatish Balay {
122949b5e25fSSatish Balay   int ierr,(*f)(Mat,int *);
123049b5e25fSSatish Balay 
123149b5e25fSSatish Balay   PetscFunctionBegin;
123249b5e25fSSatish Balay   PetscValidHeaderSpecific(mat,MAT_COOKIE);
1233c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqSBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
123449b5e25fSSatish Balay   if (f) {
123549b5e25fSSatish Balay     ierr = (*f)(mat,indices);CHKERRQ(ierr);
123649b5e25fSSatish Balay   } else {
123729bbc08cSBarry Smith     SETERRQ(1,"Wrong type of matrix to set column indices");
123849b5e25fSSatish Balay   }
123949b5e25fSSatish Balay   PetscFunctionReturn(0);
124049b5e25fSSatish Balay }
124149b5e25fSSatish Balay 
12424a2ae208SSatish Balay #undef __FUNCT__
12434a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqSBAIJ"
1244273d9f13SBarry Smith int MatSetUpPreallocation_SeqSBAIJ(Mat A)
1245273d9f13SBarry Smith {
1246273d9f13SBarry Smith   int        ierr;
1247273d9f13SBarry Smith 
1248273d9f13SBarry Smith   PetscFunctionBegin;
1249273d9f13SBarry Smith   ierr =  MatSeqSBAIJSetPreallocation(A,1,PETSC_DEFAULT,0);CHKERRQ(ierr);
1250273d9f13SBarry Smith   PetscFunctionReturn(0);
1251273d9f13SBarry Smith }
1252273d9f13SBarry Smith 
1253a6ece127SHong Zhang #undef __FUNCT__
1254a6ece127SHong Zhang #define __FUNCT__ "MatGetArray_SeqSBAIJ"
1255*4e7234bfSBarry Smith int MatGetArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1256a6ece127SHong Zhang {
1257a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
1258a6ece127SHong Zhang   PetscFunctionBegin;
1259a6ece127SHong Zhang   *array = a->a;
1260a6ece127SHong Zhang   PetscFunctionReturn(0);
1261a6ece127SHong Zhang }
1262a6ece127SHong Zhang 
1263a6ece127SHong Zhang #undef __FUNCT__
1264a6ece127SHong Zhang #define __FUNCT__ "MatRestoreArray_SeqSBAIJ"
1265*4e7234bfSBarry Smith int MatRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1266a6ece127SHong Zhang {
1267a6ece127SHong Zhang   PetscFunctionBegin;
1268a6ece127SHong Zhang   PetscFunctionReturn(0);
1269a6ece127SHong Zhang }
1270a6ece127SHong Zhang 
127142ee4b1aSHong Zhang #include "petscblaslapack.h"
127242ee4b1aSHong Zhang #undef __FUNCT__
127342ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ"
1274268466fbSBarry Smith int MatAXPY_SeqSBAIJ(const PetscScalar *a,Mat X,Mat Y,MatStructure str)
127542ee4b1aSHong Zhang {
127642ee4b1aSHong Zhang   Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ *)X->data, *y=(Mat_SeqSBAIJ *)Y->data;
1277c4319e64SHong Zhang   int          ierr,one=1,i,bs=y->bs,bs2,j;
127842ee4b1aSHong Zhang 
127942ee4b1aSHong Zhang   PetscFunctionBegin;
128042ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
1281268466fbSBarry Smith     BLaxpy_(&x->s_nz,(PetscScalar*)a,x->a,&one,y->a,&one);
1282c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1283c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
1284c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
1285c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
1286c537a176SHong Zhang     }
1287c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
1288c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
1289c4319e64SHong Zhang       y->XtoY = X;
1290c537a176SHong Zhang     }
1291c4319e64SHong Zhang     bs2 = bs*bs;
1292c537a176SHong Zhang     for (i=0; i<x->s_nz; i++) {
1293c4319e64SHong Zhang       j = 0;
1294c4319e64SHong Zhang       while (j < bs2){
12956550863bSHong Zhang         y->a[bs2*y->xtoy[i]+j] += (*a)*(x->a[bs2*i+j]);
1296c4319e64SHong Zhang         j++;
1297c537a176SHong Zhang       }
1298c4319e64SHong Zhang     }
1299c4319e64SHong Zhang     PetscLogInfo(0,"MatAXPY_SeqSBAIJ: ratio of nnz_s(X)/nnz_s(Y): %d/%d = %g\n",bs2*x->s_nz,bs2*y->s_nz,(PetscReal)(bs2*x->s_nz)/(bs2*y->s_nz));
130042ee4b1aSHong Zhang   } else {
130142ee4b1aSHong Zhang     ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr);
130242ee4b1aSHong Zhang   }
130342ee4b1aSHong Zhang   PetscFunctionReturn(0);
130442ee4b1aSHong Zhang }
130542ee4b1aSHong Zhang 
130649b5e25fSSatish Balay /* -------------------------------------------------------------------*/
130749b5e25fSSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
130849b5e25fSSatish Balay        MatGetRow_SeqSBAIJ,
130949b5e25fSSatish Balay        MatRestoreRow_SeqSBAIJ,
131049b5e25fSSatish Balay        MatMult_SeqSBAIJ_N,
131149b5e25fSSatish Balay        MatMultAdd_SeqSBAIJ_N,
131249b5e25fSSatish Balay        MatMultTranspose_SeqSBAIJ,
131349b5e25fSSatish Balay        MatMultTransposeAdd_SeqSBAIJ,
131449b5e25fSSatish Balay        MatSolve_SeqSBAIJ_N,
131549b5e25fSSatish Balay        0,
131649b5e25fSSatish Balay        0,
131749b5e25fSSatish Balay        0,
131849b5e25fSSatish Balay        0,
13195f4ef2deSHong Zhang        MatCholeskyFactor_SeqSBAIJ,
1320d06b337dSHong Zhang        MatRelax_SeqSBAIJ,
132149b5e25fSSatish Balay        MatTranspose_SeqSBAIJ,
132249b5e25fSSatish Balay        MatGetInfo_SeqSBAIJ,
132349b5e25fSSatish Balay        MatEqual_SeqSBAIJ,
132449b5e25fSSatish Balay        MatGetDiagonal_SeqSBAIJ,
132549b5e25fSSatish Balay        MatDiagonalScale_SeqSBAIJ,
132649b5e25fSSatish Balay        MatNorm_SeqSBAIJ,
132749b5e25fSSatish Balay        0,
132849b5e25fSSatish Balay        MatAssemblyEnd_SeqSBAIJ,
132949b5e25fSSatish Balay        0,
133049b5e25fSSatish Balay        MatSetOption_SeqSBAIJ,
133149b5e25fSSatish Balay        MatZeroEntries_SeqSBAIJ,
133249b5e25fSSatish Balay        MatZeroRows_SeqSBAIJ,
133349b5e25fSSatish Balay        0,
133449b5e25fSSatish Balay        0,
13355f4ef2deSHong Zhang        MatCholeskyFactorSymbolic_SeqSBAIJ,
13365f4ef2deSHong Zhang        MatCholeskyFactorNumeric_SeqSBAIJ_N,
1337273d9f13SBarry Smith        MatSetUpPreallocation_SeqSBAIJ,
1338c464158bSHong Zhang        0,
13394d101231SSatish Balay        MatICCFactorSymbolic_SeqSBAIJ,
1340a6ece127SHong Zhang        MatGetArray_SeqSBAIJ,
1341a6ece127SHong Zhang        MatRestoreArray_SeqSBAIJ,
134249b5e25fSSatish Balay        MatDuplicate_SeqSBAIJ,
134349b5e25fSSatish Balay        0,
134449b5e25fSSatish Balay        0,
134549b5e25fSSatish Balay        0,
1346950f1e5bSHong Zhang        0,
134742ee4b1aSHong Zhang        MatAXPY_SeqSBAIJ,
134849b5e25fSSatish Balay        MatGetSubMatrices_SeqSBAIJ,
134949b5e25fSSatish Balay        MatIncreaseOverlap_SeqSBAIJ,
135049b5e25fSSatish Balay        MatGetValues_SeqSBAIJ,
135149b5e25fSSatish Balay        0,
135249b5e25fSSatish Balay        MatPrintHelp_SeqSBAIJ,
135349b5e25fSSatish Balay        MatScale_SeqSBAIJ,
135449b5e25fSSatish Balay        0,
135549b5e25fSSatish Balay        0,
135649b5e25fSSatish Balay        0,
135749b5e25fSSatish Balay        MatGetBlockSize_SeqSBAIJ,
135849b5e25fSSatish Balay        MatGetRowIJ_SeqSBAIJ,
135949b5e25fSSatish Balay        MatRestoreRowIJ_SeqSBAIJ,
136049b5e25fSSatish Balay        0,
136149b5e25fSSatish Balay        0,
136249b5e25fSSatish Balay        0,
136349b5e25fSSatish Balay        0,
136449b5e25fSSatish Balay        0,
136549b5e25fSSatish Balay        0,
136649b5e25fSSatish Balay        MatSetValuesBlocked_SeqSBAIJ,
136749b5e25fSSatish Balay        MatGetSubMatrix_SeqSBAIJ,
136849b5e25fSSatish Balay        0,
136949b5e25fSSatish Balay        0,
13708a124369SBarry Smith        MatGetPetscMaps_Petsc,
1371d959ec07SHong Zhang        0,
1372d959ec07SHong Zhang        0,
1373d959ec07SHong Zhang        0,
1374d959ec07SHong Zhang        0,
1375d959ec07SHong Zhang        0,
1376d959ec07SHong Zhang        0,
13773e0d88b5SBarry Smith        MatGetRowMax_SeqSBAIJ,
13783e0d88b5SBarry Smith        0,
13793e0d88b5SBarry Smith        0,
13803e0d88b5SBarry Smith        0,
13813e0d88b5SBarry Smith        0,
13823e0d88b5SBarry Smith        0,
13833e0d88b5SBarry Smith        0,
13843e0d88b5SBarry Smith        0,
13853e0d88b5SBarry Smith        0,
13863e0d88b5SBarry Smith        0,
13873e0d88b5SBarry Smith        0,
13883e0d88b5SBarry Smith        0,
13893e0d88b5SBarry Smith        0,
13903e0d88b5SBarry Smith        0,
13913e0d88b5SBarry Smith #if !defined(PETSC_USE_COMPLEX)
13923e0d88b5SBarry Smith        MatGetInertia_SeqSBAIJ
13933e0d88b5SBarry Smith #else
13943e0d88b5SBarry Smith        0
13953e0d88b5SBarry Smith #endif
13963e0d88b5SBarry Smith };
139749b5e25fSSatish Balay 
139849b5e25fSSatish Balay EXTERN_C_BEGIN
13994a2ae208SSatish Balay #undef __FUNCT__
14004a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ"
140149b5e25fSSatish Balay int MatStoreValues_SeqSBAIJ(Mat mat)
140249b5e25fSSatish Balay {
14034afc71dfSHong Zhang   Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data;
1404c464158bSHong Zhang   int         nz = aij->i[mat->m]*aij->bs*aij->bs2;
140549b5e25fSSatish Balay   int         ierr;
140649b5e25fSSatish Balay 
140749b5e25fSSatish Balay   PetscFunctionBegin;
140849b5e25fSSatish Balay   if (aij->nonew != 1) {
140929bbc08cSBarry Smith     SETERRQ(1,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
141049b5e25fSSatish Balay   }
141149b5e25fSSatish Balay 
141249b5e25fSSatish Balay   /* allocate space for values if not already there */
141349b5e25fSSatish Balay   if (!aij->saved_values) {
141487828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
141549b5e25fSSatish Balay   }
141649b5e25fSSatish Balay 
141749b5e25fSSatish Balay   /* copy values over */
141887828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
141949b5e25fSSatish Balay   PetscFunctionReturn(0);
142049b5e25fSSatish Balay }
142149b5e25fSSatish Balay EXTERN_C_END
142249b5e25fSSatish Balay 
142349b5e25fSSatish Balay EXTERN_C_BEGIN
14244a2ae208SSatish Balay #undef __FUNCT__
14254a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ"
142649b5e25fSSatish Balay int MatRetrieveValues_SeqSBAIJ(Mat mat)
142749b5e25fSSatish Balay {
14284afc71dfSHong Zhang   Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data;
1429c464158bSHong Zhang   int         nz = aij->i[mat->m]*aij->bs*aij->bs2,ierr;
143049b5e25fSSatish Balay 
143149b5e25fSSatish Balay   PetscFunctionBegin;
143249b5e25fSSatish Balay   if (aij->nonew != 1) {
143329bbc08cSBarry Smith     SETERRQ(1,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
143449b5e25fSSatish Balay   }
143549b5e25fSSatish Balay   if (!aij->saved_values) {
143629bbc08cSBarry Smith     SETERRQ(1,"Must call MatStoreValues(A);first");
143749b5e25fSSatish Balay   }
143849b5e25fSSatish Balay 
143949b5e25fSSatish Balay   /* copy values over */
144087828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
144149b5e25fSSatish Balay   PetscFunctionReturn(0);
144249b5e25fSSatish Balay }
144349b5e25fSSatish Balay EXTERN_C_END
144449b5e25fSSatish Balay 
14458549e402SHong Zhang EXTERN_C_BEGIN
14464a2ae208SSatish Balay #undef __FUNCT__
1447a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ"
1448a23d5eceSKris Buschelman int MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,int bs,int nz,int *nnz)
144949b5e25fSSatish Balay {
1450c464158bSHong Zhang   Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data;
14510c955e93SHong Zhang   int          i,len,ierr,mbs,bs2;
145249b5e25fSSatish Balay   PetscTruth   flg;
14534afc71dfSHong Zhang   int          s_nz;
145449b5e25fSSatish Balay 
145549b5e25fSSatish Balay   PetscFunctionBegin;
1456273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1457e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1458c464158bSHong Zhang   mbs  = B->m/bs;
145949b5e25fSSatish Balay   bs2  = bs*bs;
146049b5e25fSSatish Balay 
1461c464158bSHong Zhang   if (mbs*bs != B->m) {
146229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize");
146349b5e25fSSatish Balay   }
146449b5e25fSSatish Balay 
1465435da068SBarry Smith   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
1466435da068SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %d",nz);
146749b5e25fSSatish Balay   if (nnz) {
146849b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
146929bbc08cSBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %d value %d",i,nnz[i]);
147080fe4e49SBarry Smith       if (nnz[i] > mbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %d value %d rowlength %d",i,nnz[i],mbs);
147149b5e25fSSatish Balay     }
147249b5e25fSSatish Balay   }
147349b5e25fSSatish Balay 
1474e82a3eeeSBarry Smith   ierr    = PetscOptionsHasName(B->prefix,"-mat_no_unroll",&flg);CHKERRQ(ierr);
147549b5e25fSSatish Balay   if (!flg) {
147649b5e25fSSatish Balay     switch (bs) {
147749b5e25fSSatish Balay     case 1:
14784ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1;
147949b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_1;
1480d59c15a7SBarry Smith       B->ops->solves          = MatSolves_SeqSBAIJ_1;
148149b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_1;
148249b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_1;
148349b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_1;
148449b5e25fSSatish Balay       break;
148549b5e25fSSatish Balay     case 2:
14864ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
148749b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_2;
148849b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_2;
148949b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_2;
149049b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_2;
149149b5e25fSSatish Balay       break;
149249b5e25fSSatish Balay     case 3:
14935f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
149449b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_3;
149549b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_3;
149649b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_3;
149749b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_3;
149849b5e25fSSatish Balay       break;
149949b5e25fSSatish Balay     case 4:
15005f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
150149b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_4;
150249b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_4;
150349b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_4;
150449b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_4;
150549b5e25fSSatish Balay       break;
150649b5e25fSSatish Balay     case 5:
15075f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
150849b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_5;
150949b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_5;
151049b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_5;
151149b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_5;
151249b5e25fSSatish Balay       break;
151349b5e25fSSatish Balay     case 6:
15145f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
151549b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_6;
151649b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_6;
151749b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_6;
151849b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_6;
151949b5e25fSSatish Balay       break;
152049b5e25fSSatish Balay     case 7:
1521de53e5efSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
152249b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_7;
152349b5e25fSSatish Balay       B->ops->solvetranspose  = MatSolveTranspose_SeqSBAIJ_7;
1524de53e5efSHong Zhang       B->ops->mult            = MatMult_SeqSBAIJ_7;
152549b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_7;
152649b5e25fSSatish Balay       break;
152749b5e25fSSatish Balay     }
152849b5e25fSSatish Balay   }
152949b5e25fSSatish Balay 
153049b5e25fSSatish Balay   b->mbs = mbs;
15314afc71dfSHong Zhang   b->nbs = mbs;
1532b0a32e0cSBarry Smith   ierr   = PetscMalloc((mbs+1)*sizeof(int),&b->imax);CHKERRQ(ierr);
153349b5e25fSSatish Balay   if (!nnz) {
1534435da068SBarry Smith     if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
153549b5e25fSSatish Balay     else if (nz <= 0)        nz = 1;
153649b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
15378cef66ccSHong Zhang       b->imax[i] = nz;
153849b5e25fSSatish Balay     }
1539153ea458SHong Zhang     nz = nz*mbs; /* total nz */
154049b5e25fSSatish Balay   } else {
154149b5e25fSSatish Balay     nz = 0;
15428cef66ccSHong Zhang     for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
154349b5e25fSSatish Balay   }
15448cef66ccSHong Zhang   /* s_nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */
15458cef66ccSHong Zhang   s_nz = nz;
154649b5e25fSSatish Balay 
154749b5e25fSSatish Balay   /* allocate the matrix space */
1548c464158bSHong Zhang   len  = s_nz*sizeof(int) + s_nz*bs2*sizeof(MatScalar) + (B->m+1)*sizeof(int);
154982502324SSatish Balay   ierr = PetscMalloc(len,&b->a);CHKERRQ(ierr);
155049b5e25fSSatish Balay   ierr = PetscMemzero(b->a,s_nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
155149b5e25fSSatish Balay   b->j = (int*)(b->a + s_nz*bs2);
155249b5e25fSSatish Balay   ierr = PetscMemzero(b->j,s_nz*sizeof(int));CHKERRQ(ierr);
155349b5e25fSSatish Balay   b->i = b->j + s_nz;
155449b5e25fSSatish Balay   b->singlemalloc = PETSC_TRUE;
155549b5e25fSSatish Balay 
155649b5e25fSSatish Balay   /* pointer to beginning of each row */
155749b5e25fSSatish Balay   b->i[0] = 0;
155849b5e25fSSatish Balay   for (i=1; i<mbs+1; i++) {
155949b5e25fSSatish Balay     b->i[i] = b->i[i-1] + b->imax[i-1];
156049b5e25fSSatish Balay   }
156149b5e25fSSatish Balay 
156249b5e25fSSatish Balay   /* b->ilen will count nonzeros in each block row so far. */
15635033bc48SSatish Balay   ierr = PetscMalloc((mbs+1)*sizeof(int),&b->ilen);CHKERRQ(ierr);
1564b0a32e0cSBarry Smith   PetscLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ));
156549b5e25fSSatish Balay   for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
156649b5e25fSSatish Balay 
156749b5e25fSSatish Balay   b->bs               = bs;
156849b5e25fSSatish Balay   b->bs2              = bs2;
156949b5e25fSSatish Balay   b->s_nz             = 0;
157049b5e25fSSatish Balay   b->s_maxnz          = s_nz*bs2;
1571153ea458SHong Zhang 
157216cdd363SHong Zhang   b->inew             = 0;
157316cdd363SHong Zhang   b->jnew             = 0;
157416cdd363SHong Zhang   b->anew             = 0;
157516cdd363SHong Zhang   b->a2anew           = 0;
15761a3463dfSHong Zhang   b->permute          = PETSC_FALSE;
1577c464158bSHong Zhang   PetscFunctionReturn(0);
1578c464158bSHong Zhang }
1579a23d5eceSKris Buschelman EXTERN_C_END
1580153ea458SHong Zhang 
1581a23d5eceSKris Buschelman EXTERN_C_BEGIN
1582a23d5eceSKris Buschelman #undef __FUNCT__
1583a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ"
1584a23d5eceSKris Buschelman int MatCreate_SeqSBAIJ(Mat B)
1585a23d5eceSKris Buschelman {
1586a23d5eceSKris Buschelman   Mat_SeqSBAIJ *b;
1587a23d5eceSKris Buschelman   int          ierr,size;
1588a23d5eceSKris Buschelman 
1589a23d5eceSKris Buschelman   PetscFunctionBegin;
1590a23d5eceSKris Buschelman   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
1591a23d5eceSKris Buschelman   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
1592a23d5eceSKris Buschelman   B->m = B->M = PetscMax(B->m,B->M);
1593a23d5eceSKris Buschelman   B->n = B->N = PetscMax(B->n,B->N);
1594a23d5eceSKris Buschelman 
1595a23d5eceSKris Buschelman   ierr    = PetscNew(Mat_SeqSBAIJ,&b);CHKERRQ(ierr);
1596a23d5eceSKris Buschelman   B->data = (void*)b;
1597a23d5eceSKris Buschelman   ierr    = PetscMemzero(b,sizeof(Mat_SeqSBAIJ));CHKERRQ(ierr);
1598a23d5eceSKris Buschelman   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1599a23d5eceSKris Buschelman   B->ops->destroy     = MatDestroy_SeqSBAIJ;
1600a23d5eceSKris Buschelman   B->ops->view        = MatView_SeqSBAIJ;
1601a23d5eceSKris Buschelman   B->factor           = 0;
1602a23d5eceSKris Buschelman   B->lupivotthreshold = 1.0;
1603a23d5eceSKris Buschelman   B->mapping          = 0;
1604a23d5eceSKris Buschelman   b->row              = 0;
1605a23d5eceSKris Buschelman   b->icol             = 0;
1606a23d5eceSKris Buschelman   b->reallocs         = 0;
1607a23d5eceSKris Buschelman   b->saved_values     = 0;
1608a23d5eceSKris Buschelman 
1609a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1610a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
1611a23d5eceSKris Buschelman 
1612a23d5eceSKris Buschelman   b->sorted           = PETSC_FALSE;
1613a23d5eceSKris Buschelman   b->roworiented      = PETSC_TRUE;
1614a23d5eceSKris Buschelman   b->nonew            = 0;
1615a23d5eceSKris Buschelman   b->diag             = 0;
1616a23d5eceSKris Buschelman   b->solve_work       = 0;
1617a23d5eceSKris Buschelman   b->mult_work        = 0;
1618a23d5eceSKris Buschelman   B->spptr            = 0;
1619a23d5eceSKris Buschelman   b->keepzeroedrows   = PETSC_FALSE;
1620a23d5eceSKris Buschelman   b->xtoy             = 0;
1621a23d5eceSKris Buschelman   b->XtoY             = 0;
1622a23d5eceSKris Buschelman 
1623a23d5eceSKris Buschelman   b->inew             = 0;
1624a23d5eceSKris Buschelman   b->jnew             = 0;
1625a23d5eceSKris Buschelman   b->anew             = 0;
1626a23d5eceSKris Buschelman   b->a2anew           = 0;
1627a23d5eceSKris Buschelman   b->permute          = PETSC_FALSE;
1628a23d5eceSKris Buschelman 
1629a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1630a23d5eceSKris Buschelman                                      "MatStoreValues_SeqSBAIJ",
1631a23d5eceSKris Buschelman                                      MatStoreValues_SeqSBAIJ);CHKERRQ(ierr);
1632a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1633a23d5eceSKris Buschelman                                      "MatRetrieveValues_SeqSBAIJ",
1634a23d5eceSKris Buschelman                                      (void*)MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr);
1635a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",
1636a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetColumnIndices_SeqSBAIJ",
1637a23d5eceSKris Buschelman                                      MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr);
1638a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",
1639a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetPreallocation_SeqSBAIJ",
1640a23d5eceSKris Buschelman                                      MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr);
1641a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1642a23d5eceSKris Buschelman }
1643a23d5eceSKris Buschelman EXTERN_C_END
1644a23d5eceSKris Buschelman 
1645a23d5eceSKris Buschelman #undef __FUNCT__
1646a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation"
1647a23d5eceSKris Buschelman /*@C
1648a23d5eceSKris Buschelman    MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
1649a23d5eceSKris Buschelman    compressed row) format.  For good matrix assembly performance the
1650a23d5eceSKris Buschelman    user should preallocate the matrix storage by setting the parameter nz
1651a23d5eceSKris Buschelman    (or the array nnz).  By setting these parameters accurately, performance
1652a23d5eceSKris Buschelman    during matrix assembly can be increased by more than a factor of 50.
1653a23d5eceSKris Buschelman 
1654a23d5eceSKris Buschelman    Collective on Mat
1655a23d5eceSKris Buschelman 
1656a23d5eceSKris Buschelman    Input Parameters:
1657a23d5eceSKris Buschelman +  A - the symmetric matrix
1658a23d5eceSKris Buschelman .  bs - size of block
1659a23d5eceSKris Buschelman .  nz - number of block nonzeros per block row (same for all rows)
1660a23d5eceSKris Buschelman -  nnz - array containing the number of block nonzeros in the upper triangular plus
1661a23d5eceSKris Buschelman          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1662a23d5eceSKris Buschelman 
1663a23d5eceSKris Buschelman    Options Database Keys:
1664a23d5eceSKris Buschelman .   -mat_no_unroll - uses code that does not unroll the loops in the
1665a23d5eceSKris Buschelman                      block calculations (much slower)
1666a23d5eceSKris Buschelman .    -mat_block_size - size of the blocks to use
1667a23d5eceSKris Buschelman 
1668a23d5eceSKris Buschelman    Level: intermediate
1669a23d5eceSKris Buschelman 
1670a23d5eceSKris Buschelman    Notes:
1671a23d5eceSKris Buschelman    Specify the preallocated storage with either nz or nnz (not both).
1672a23d5eceSKris Buschelman    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1673a23d5eceSKris Buschelman    allocation.  For additional details, see the users manual chapter on
1674a23d5eceSKris Buschelman    matrices.
1675a23d5eceSKris Buschelman 
1676a23d5eceSKris Buschelman .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1677a23d5eceSKris Buschelman @*/
1678ca01db9bSBarry Smith int MatSeqSBAIJSetPreallocation(Mat B,int bs,int nz,const int nnz[]) {
1679ca01db9bSBarry Smith   int ierr,(*f)(Mat,int,int,const int[]);
1680a23d5eceSKris Buschelman 
1681a23d5eceSKris Buschelman   PetscFunctionBegin;
1682a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1683a23d5eceSKris Buschelman   if (f) {
1684a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
1685a23d5eceSKris Buschelman   }
1686a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1687a23d5eceSKris Buschelman }
168849b5e25fSSatish Balay 
16894a2ae208SSatish Balay #undef __FUNCT__
16904a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ"
1691c464158bSHong Zhang /*@C
1692c464158bSHong Zhang    MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block
1693c464158bSHong Zhang    compressed row) format.  For good matrix assembly performance the
1694c464158bSHong Zhang    user should preallocate the matrix storage by setting the parameter nz
1695c464158bSHong Zhang    (or the array nnz).  By setting these parameters accurately, performance
1696c464158bSHong Zhang    during matrix assembly can be increased by more than a factor of 50.
169749b5e25fSSatish Balay 
1698c464158bSHong Zhang    Collective on MPI_Comm
1699c464158bSHong Zhang 
1700c464158bSHong Zhang    Input Parameters:
1701c464158bSHong Zhang +  comm - MPI communicator, set to PETSC_COMM_SELF
1702c464158bSHong Zhang .  bs - size of block
1703c464158bSHong Zhang .  m - number of rows, or number of columns
1704c464158bSHong Zhang .  nz - number of block nonzeros per block row (same for all rows)
1705744e8345SSatish Balay -  nnz - array containing the number of block nonzeros in the upper triangular plus
1706744e8345SSatish Balay          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1707c464158bSHong Zhang 
1708c464158bSHong Zhang    Output Parameter:
1709c464158bSHong Zhang .  A - the symmetric matrix
1710c464158bSHong Zhang 
1711c464158bSHong Zhang    Options Database Keys:
1712c464158bSHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1713c464158bSHong Zhang                      block calculations (much slower)
1714c464158bSHong Zhang .    -mat_block_size - size of the blocks to use
1715c464158bSHong Zhang 
1716c464158bSHong Zhang    Level: intermediate
1717c464158bSHong Zhang 
1718c464158bSHong Zhang    Notes:
1719c464158bSHong Zhang 
1720c464158bSHong Zhang    Specify the preallocated storage with either nz or nnz (not both).
1721c464158bSHong Zhang    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1722c464158bSHong Zhang    allocation.  For additional details, see the users manual chapter on
1723c464158bSHong Zhang    matrices.
1724c464158bSHong Zhang 
1725c464158bSHong Zhang .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1726c464158bSHong Zhang @*/
1727ca01db9bSBarry Smith int MatCreateSeqSBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,const int nnz[],Mat *A)
1728c464158bSHong Zhang {
1729c464158bSHong Zhang   int ierr;
1730c464158bSHong Zhang 
1731c464158bSHong Zhang   PetscFunctionBegin;
1732c464158bSHong Zhang   ierr = MatCreate(comm,m,n,m,n,A);CHKERRQ(ierr);
1733c464158bSHong Zhang   ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1734273d9f13SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(*A,bs,nz,nnz);CHKERRQ(ierr);
173549b5e25fSSatish Balay   PetscFunctionReturn(0);
173649b5e25fSSatish Balay }
173749b5e25fSSatish Balay 
17384a2ae208SSatish Balay #undef __FUNCT__
17394a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ"
174049b5e25fSSatish Balay int MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
174149b5e25fSSatish Balay {
174249b5e25fSSatish Balay   Mat         C;
174349b5e25fSSatish Balay   Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data;
174449b5e25fSSatish Balay   int         i,len,mbs = a->mbs,nz = a->s_nz,bs2 =a->bs2,ierr;
174549b5e25fSSatish Balay 
174649b5e25fSSatish Balay   PetscFunctionBegin;
174729bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
174849b5e25fSSatish Balay 
174949b5e25fSSatish Balay   *B = 0;
1750692f9cbeSHong Zhang   ierr = MatCreate(A->comm,A->m,A->n,A->m,A->n,&C);CHKERRQ(ierr);
1751692f9cbeSHong Zhang   ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr);
1752692f9cbeSHong Zhang   c    = (Mat_SeqSBAIJ*)C->data;
1753692f9cbeSHong Zhang 
175449b5e25fSSatish Balay   ierr              = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1755273d9f13SBarry Smith   C->preallocated   = PETSC_TRUE;
175649b5e25fSSatish Balay   C->factor         = A->factor;
175749b5e25fSSatish Balay   c->row            = 0;
175849b5e25fSSatish Balay   c->icol           = 0;
175949b5e25fSSatish Balay   c->saved_values   = 0;
176049b5e25fSSatish Balay   c->keepzeroedrows = a->keepzeroedrows;
176149b5e25fSSatish Balay   C->assembled      = PETSC_TRUE;
176249b5e25fSSatish Balay 
176349b5e25fSSatish Balay   c->bs         = a->bs;
176449b5e25fSSatish Balay   c->bs2        = a->bs2;
176549b5e25fSSatish Balay   c->mbs        = a->mbs;
176649b5e25fSSatish Balay   c->nbs        = a->nbs;
176749b5e25fSSatish Balay 
1768b0a32e0cSBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(int),&c->imax);CHKERRQ(ierr);
1769b0a32e0cSBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(int),&c->ilen);CHKERRQ(ierr);
177049b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
177149b5e25fSSatish Balay     c->imax[i] = a->imax[i];
177249b5e25fSSatish Balay     c->ilen[i] = a->ilen[i];
177349b5e25fSSatish Balay   }
177449b5e25fSSatish Balay 
177549b5e25fSSatish Balay   /* allocate the matrix space */
177649b5e25fSSatish Balay   c->singlemalloc = PETSC_TRUE;
177749b5e25fSSatish Balay   len  = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(MatScalar) + sizeof(int));
177882502324SSatish Balay   ierr = PetscMalloc(len,&c->a);CHKERRQ(ierr);
177949b5e25fSSatish Balay   c->j = (int*)(c->a + nz*bs2);
178049b5e25fSSatish Balay   c->i = c->j + nz;
178149b5e25fSSatish Balay   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int));CHKERRQ(ierr);
178249b5e25fSSatish Balay   if (mbs > 0) {
178349b5e25fSSatish Balay     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(int));CHKERRQ(ierr);
178449b5e25fSSatish Balay     if (cpvalues == MAT_COPY_VALUES) {
178549b5e25fSSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
178649b5e25fSSatish Balay     } else {
178749b5e25fSSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
178849b5e25fSSatish Balay     }
178949b5e25fSSatish Balay   }
179049b5e25fSSatish Balay 
1791b0a32e0cSBarry Smith   PetscLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ));
179249b5e25fSSatish Balay   c->sorted      = a->sorted;
179349b5e25fSSatish Balay   c->roworiented = a->roworiented;
179449b5e25fSSatish Balay   c->nonew       = a->nonew;
179549b5e25fSSatish Balay 
179649b5e25fSSatish Balay   if (a->diag) {
1797b0a32e0cSBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(int),&c->diag);CHKERRQ(ierr);
1798b0a32e0cSBarry Smith     PetscLogObjectMemory(C,(mbs+1)*sizeof(int));
179949b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
180049b5e25fSSatish Balay       c->diag[i] = a->diag[i];
180149b5e25fSSatish Balay     }
180249b5e25fSSatish Balay   } else c->diag        = 0;
180349b5e25fSSatish Balay   c->s_nz               = a->s_nz;
180449b5e25fSSatish Balay   c->s_maxnz            = a->s_maxnz;
180549b5e25fSSatish Balay   c->solve_work         = 0;
18062a1b7f2aSHong Zhang   C->spptr              = 0;      /* Dangerous -I'm throwing away a->spptr */
180749b5e25fSSatish Balay   c->mult_work          = 0;
180849b5e25fSSatish Balay   *B = C;
1809b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(A->qlist,&C->qlist);CHKERRQ(ierr);
181049b5e25fSSatish Balay   PetscFunctionReturn(0);
181149b5e25fSSatish Balay }
181249b5e25fSSatish Balay 
18138549e402SHong Zhang EXTERN_C_BEGIN
18144a2ae208SSatish Balay #undef __FUNCT__
18154a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqSBAIJ"
1816b0a32e0cSBarry Smith int MatLoad_SeqSBAIJ(PetscViewer viewer,MatType type,Mat *A)
181749b5e25fSSatish Balay {
181849b5e25fSSatish Balay   Mat_SeqSBAIJ *a;
181949b5e25fSSatish Balay   Mat          B;
182049b5e25fSSatish Balay   int          i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1;
18213f7326a9SHong Zhang   int          *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount;
182249b5e25fSSatish Balay   int          kmax,jcount,block,idx,point,nzcountb,extra_rows;
182349b5e25fSSatish Balay   int          *masked,nmask,tmp,bs2,ishift;
182487828ca2SBarry Smith   PetscScalar  *aa;
182549b5e25fSSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
182627f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS)
1827ecc4ab6dSBarry Smith   PetscTruth   flag;
1828ecc4ab6dSBarry Smith #endif
182949b5e25fSSatish Balay 
183049b5e25fSSatish Balay   PetscFunctionBegin;
1831b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
183249b5e25fSSatish Balay   bs2  = bs*bs;
183349b5e25fSSatish Balay 
183449b5e25fSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
183529bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
1836b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
183749b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
1838552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
183949b5e25fSSatish Balay   M = header[1]; N = header[2]; nz = header[3];
184049b5e25fSSatish Balay 
184149b5e25fSSatish Balay   if (header[3] < 0) {
184229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ");
184349b5e25fSSatish Balay   }
184449b5e25fSSatish Balay 
184529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
184649b5e25fSSatish Balay 
184749b5e25fSSatish Balay   /*
184849b5e25fSSatish Balay      This code adds extra rows to make sure the number of rows is
184949b5e25fSSatish Balay     divisible by the blocksize
185049b5e25fSSatish Balay   */
185149b5e25fSSatish Balay   mbs        = M/bs;
185249b5e25fSSatish Balay   extra_rows = bs - M + bs*(mbs);
185349b5e25fSSatish Balay   if (extra_rows == bs) extra_rows = 0;
185449b5e25fSSatish Balay   else                  mbs++;
185549b5e25fSSatish Balay   if (extra_rows) {
1856b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_SeqSBAIJ:Padding loaded matrix to match blocksize\n");
185749b5e25fSSatish Balay   }
185849b5e25fSSatish Balay 
185949b5e25fSSatish Balay   /* read in row lengths */
1860b0a32e0cSBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
186149b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
186249b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
186349b5e25fSSatish Balay 
186449b5e25fSSatish Balay   /* read in column indices */
1865b0a32e0cSBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(int),&jj);CHKERRQ(ierr);
186649b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
186749b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
186849b5e25fSSatish Balay 
186949b5e25fSSatish Balay   /* loop over row lengths determining block row lengths */
187082502324SSatish Balay   ierr     = PetscMalloc(mbs*sizeof(int),&s_browlengths);CHKERRQ(ierr);
1871a91a614fSBarry Smith   ierr     = PetscMemzero(s_browlengths,mbs*sizeof(int));CHKERRQ(ierr);
187282502324SSatish Balay   ierr     = PetscMalloc(2*mbs*sizeof(int),&mask);CHKERRQ(ierr);
187349b5e25fSSatish Balay   ierr     = PetscMemzero(mask,mbs*sizeof(int));CHKERRQ(ierr);
187449b5e25fSSatish Balay   masked   = mask + mbs;
187549b5e25fSSatish Balay   rowcount = 0; nzcount = 0;
187649b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
187749b5e25fSSatish Balay     nmask = 0;
187849b5e25fSSatish Balay     for (j=0; j<bs; j++) {
187949b5e25fSSatish Balay       kmax = rowlengths[rowcount];
188049b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
18812d703238SHong Zhang         tmp = jj[nzcount++]/bs;   /* block col. index */
188203630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;}
188349b5e25fSSatish Balay       }
188449b5e25fSSatish Balay       rowcount++;
188549b5e25fSSatish Balay     }
1886574b2666SHong Zhang     s_browlengths[i] += nmask;
1887574b2666SHong Zhang 
188849b5e25fSSatish Balay     /* zero out the mask elements we set */
188949b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
189049b5e25fSSatish Balay   }
189149b5e25fSSatish Balay 
189249b5e25fSSatish Balay   /* create our matrix */
18937fe2be48SHong Zhang   ierr = MatCreateSeqSBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,s_browlengths,A);CHKERRQ(ierr);
189449b5e25fSSatish Balay   B = *A;
189549b5e25fSSatish Balay   a = (Mat_SeqSBAIJ*)B->data;
189649b5e25fSSatish Balay 
189749b5e25fSSatish Balay   /* set matrix "i" values */
189849b5e25fSSatish Balay   a->i[0] = 0;
189949b5e25fSSatish Balay   for (i=1; i<= mbs; i++) {
1900574b2666SHong Zhang     a->i[i]      = a->i[i-1] + s_browlengths[i-1];
1901574b2666SHong Zhang     a->ilen[i-1] = s_browlengths[i-1];
190249b5e25fSSatish Balay   }
19037fe2be48SHong Zhang   a->s_nz = a->i[mbs];
190449b5e25fSSatish Balay 
190549b5e25fSSatish Balay   /* read in nonzero values */
190687828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
190749b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
190849b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
190949b5e25fSSatish Balay 
191049b5e25fSSatish Balay   /* set "a" and "j" values into matrix */
191149b5e25fSSatish Balay   nzcount = 0; jcount = 0;
191249b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
191349b5e25fSSatish Balay     nzcountb = nzcount;
191449b5e25fSSatish Balay     nmask    = 0;
191549b5e25fSSatish Balay     for (j=0; j<bs; j++) {
191649b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
191749b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
19182d703238SHong Zhang         tmp = jj[nzcount++]/bs; /* block col. index */
191903630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;}
19202d703238SHong Zhang       }
19212d703238SHong Zhang     }
19222d703238SHong Zhang     /* sort the masked values */
19232d703238SHong Zhang     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
19242d703238SHong Zhang 
19252d703238SHong Zhang     /* set "j" values into matrix */
19262d703238SHong Zhang     maskcount = 1;
19272d703238SHong Zhang     for (j=0; j<nmask; j++) {
192849b5e25fSSatish Balay       a->j[jcount++]  = masked[j];
192949b5e25fSSatish Balay       mask[masked[j]] = maskcount++;
193049b5e25fSSatish Balay     }
1931574b2666SHong Zhang 
193249b5e25fSSatish Balay     /* set "a" values into matrix */
193349b5e25fSSatish Balay     ishift = bs2*a->i[i];
193449b5e25fSSatish Balay     for (j=0; j<bs; j++) {
193549b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
193649b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
1937574b2666SHong Zhang         tmp       = jj[nzcountb]/bs ; /* block col. index */
1938574b2666SHong Zhang         if (tmp >= i){
193949b5e25fSSatish Balay           block     = mask[tmp] - 1;
194049b5e25fSSatish Balay           point     = jj[nzcountb] - bs*tmp;
194149b5e25fSSatish Balay           idx       = ishift + bs2*block + j + bs*point;
1942574b2666SHong Zhang           a->a[idx] = aa[nzcountb];
1943574b2666SHong Zhang         }
1944574b2666SHong Zhang         nzcountb++;
194549b5e25fSSatish Balay       }
194649b5e25fSSatish Balay     }
194749b5e25fSSatish Balay     /* zero out the mask elements we set */
194849b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
194949b5e25fSSatish Balay   }
195029bbc08cSBarry Smith   if (jcount != a->s_nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
195149b5e25fSSatish Balay 
195249b5e25fSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1953574b2666SHong Zhang   ierr = PetscFree(s_browlengths);CHKERRQ(ierr);
195449b5e25fSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
195549b5e25fSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
195649b5e25fSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
195749b5e25fSSatish Balay 
195849b5e25fSSatish Balay   B->assembled = PETSC_TRUE;
195927fa2452SHong Zhang #if defined(PETSC_HAVE_SPOOLES)
196027fa2452SHong Zhang   ierr = PetscOptionsHasName(B->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr);
196127fa2452SHong Zhang   if (flag) { ierr = MatUseSpooles_SeqSBAIJ(B);CHKERRQ(ierr); }
1962ecc4ab6dSBarry Smith #endif
196327f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS)
196427f1aa60SHong Zhang   ierr = PetscOptionsHasName(B->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr);
196527f1aa60SHong Zhang   if (flag) { ierr = MatUseMUMPS_MPIAIJ(B);CHKERRQ(ierr); }
196627f1aa60SHong Zhang #endif
196749b5e25fSSatish Balay   ierr = MatView_Private(B);CHKERRQ(ierr);
196849b5e25fSSatish Balay   PetscFunctionReturn(0);
196949b5e25fSSatish Balay }
19708549e402SHong Zhang EXTERN_C_END
1971574b2666SHong Zhang 
1972d06b337dSHong Zhang #undef __FUNCT__
1973d06b337dSHong Zhang #define __FUNCT__ "MatRelax_SeqSBAIJ"
1974c14dc6b6SHong Zhang int MatRelax_SeqSBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
1975d06b337dSHong Zhang {
1976d06b337dSHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
1977d06b337dSHong Zhang   MatScalar    *aa=a->a,*v,*v1;
1978d06b337dSHong Zhang   PetscScalar  *x,*b,*t,sum,d;
1979d06b337dSHong Zhang   int          m=a->mbs,bs=a->bs,*ai=a->i,*aj=a->j,ierr;
1980d06b337dSHong Zhang   int          nz,nz1,*vj,*vj1,i;
1981d06b337dSHong Zhang 
1982d06b337dSHong Zhang   PetscFunctionBegin;
1983b965ef7fSBarry Smith   its = its*lits;
198491723122SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
1985d06b337dSHong Zhang 
1986d06b337dSHong Zhang   if (bs > 1)
1987d06b337dSHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
1988d06b337dSHong Zhang 
1989d06b337dSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1990d06b337dSHong Zhang   if (xx != bb) {
1991d06b337dSHong Zhang     ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
1992d06b337dSHong Zhang   } else {
1993d06b337dSHong Zhang     b = x;
1994d06b337dSHong Zhang   }
1995d06b337dSHong Zhang 
1996d06b337dSHong Zhang   ierr = PetscMalloc(m*sizeof(PetscScalar),&t);CHKERRQ(ierr);
1997d06b337dSHong Zhang 
1998d06b337dSHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
19992798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
2000d06b337dSHong Zhang       for (i=0; i<m; i++)
2001d06b337dSHong Zhang         t[i] = b[i];
2002d06b337dSHong Zhang 
2003d06b337dSHong Zhang       for (i=0; i<m; i++){
200444706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
2005d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2006d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2007d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2008d06b337dSHong Zhang         x[i] = omega*t[i]/d;
2009d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++); /* update rhs */
201044706875SHong Zhang         PetscLogFlops(2*nz-1);
2011d06b337dSHong Zhang       }
2012d06b337dSHong Zhang     }
2013d06b337dSHong Zhang 
20142798e883SHong Zhang     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
2015d06b337dSHong Zhang       for (i=0; i<m; i++)
2016d06b337dSHong Zhang         t[i] = b[i];
2017d06b337dSHong Zhang 
2018d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2019d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2020d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2021d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2022d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
202344706875SHong Zhang         PetscLogFlops(2*nz-1);
2024d06b337dSHong Zhang       }
2025d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2026d06b337dSHong Zhang         d  = *(aa + ai[i]);
2027d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2028d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2029d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2030d06b337dSHong Zhang         sum = t[i];
2031d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
203244706875SHong Zhang         PetscLogFlops(2*nz-1);
2033d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2034d06b337dSHong Zhang       }
2035d06b337dSHong Zhang     }
2036d06b337dSHong Zhang     its--;
2037d06b337dSHong Zhang   }
2038d06b337dSHong Zhang 
2039d06b337dSHong Zhang   while (its--) {
204044706875SHong Zhang     /*
204144706875SHong Zhang        forward sweep:
204244706875SHong Zhang        for i=0,...,m-1:
204344706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
204444706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
204544706875SHong Zhang          b      = b - x[i]*U^T(i,:);
2046d06b337dSHong Zhang 
204744706875SHong Zhang     */
20482798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
2049d06b337dSHong Zhang       for (i=0; i<m; i++)
2050d06b337dSHong Zhang         t[i] = b[i];
2051d06b337dSHong Zhang 
2052d06b337dSHong Zhang       for (i=0; i<m; i++){
205344706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
2054d06b337dSHong Zhang         v  = aa + ai[i] + 1; v1=v;
2055d06b337dSHong Zhang         vj = aj + ai[i] + 1; vj1=vj;
2056d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1; nz1=nz;
2057d06b337dSHong Zhang         sum = t[i];
2058d06b337dSHong Zhang         while (nz1--) sum -= (*v1++)*x[*vj1++];
2059d06b337dSHong Zhang         x[i] = (1-omega)*x[i] + omega*sum/d;
2060d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
206144706875SHong Zhang         PetscLogFlops(4*nz-2);
2062d06b337dSHong Zhang       }
2063d06b337dSHong Zhang     }
2064d06b337dSHong Zhang 
20652798e883SHong Zhang   if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
206644706875SHong Zhang       /*
206744706875SHong Zhang        backward sweep:
206844706875SHong Zhang        b = b - x[i]*U^T(i,:), i=0,...,n-2
206944706875SHong Zhang        for i=m-1,...,0:
207044706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
207144706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
207244706875SHong Zhang       */
2073d06b337dSHong Zhang       for (i=0; i<m; i++)
2074d06b337dSHong Zhang         t[i] = b[i];
2075d06b337dSHong Zhang 
2076d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2077d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2078d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2079d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2080d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
208144706875SHong Zhang         PetscLogFlops(2*nz-1);
2082d06b337dSHong Zhang       }
2083d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2084d06b337dSHong Zhang         d  = *(aa + ai[i]);
2085d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2086d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2087d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2088d06b337dSHong Zhang         sum = t[i];
2089d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
209044706875SHong Zhang         PetscLogFlops(2*nz-1);
2091d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2092d06b337dSHong Zhang       }
2093d06b337dSHong Zhang     }
2094d06b337dSHong Zhang   }
2095d06b337dSHong Zhang 
2096d06b337dSHong Zhang   ierr = PetscFree(t); CHKERRQ(ierr);
2097d06b337dSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2098d06b337dSHong Zhang   if (bb != xx) {
2099d06b337dSHong Zhang     ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2100d06b337dSHong Zhang   }
21012798e883SHong Zhang 
2102d06b337dSHong Zhang   PetscFunctionReturn(0);
2103d06b337dSHong Zhang }
2104d06b337dSHong Zhang 
2105d06b337dSHong Zhang 
2106d06b337dSHong Zhang 
2107d06b337dSHong Zhang 
210849b5e25fSSatish Balay 
210949b5e25fSSatish Balay 
2110