173f4d377SMatthew Knepley /*$Id: sbaij.c,v 1.62 2001/08/07 03:03:01 balay Exp $*/ 249b5e25fSSatish Balay 349b5e25fSSatish Balay /* 4a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 549b5e25fSSatish Balay matrix storage format. 649b5e25fSSatish Balay */ 79e070d67SMatthew Knepley #include "src/mat/impls/baij/seq/baij.h" /*I "petscmat.h" I*/ 849b5e25fSSatish Balay #include "src/vec/vecimpl.h" 949b5e25fSSatish Balay #include "src/inline/spops.h" 10aec82049SSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 1149b5e25fSSatish Balay 1249b5e25fSSatish Balay #define CHUNKSIZE 10 1349b5e25fSSatish Balay 1449b5e25fSSatish Balay /* 1549b5e25fSSatish Balay Checks for missing diagonals 1649b5e25fSSatish Balay */ 174a2ae208SSatish Balay #undef __FUNCT__ 184a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ" 1949b5e25fSSatish Balay int MatMissingDiagonal_SeqSBAIJ(Mat A) 2049b5e25fSSatish Balay { 21045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 2249b5e25fSSatish Balay int *diag,*jj = a->j,i,ierr; 2349b5e25fSSatish Balay 2449b5e25fSSatish Balay PetscFunctionBegin; 25045c9aa0SHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr); 2649b5e25fSSatish Balay diag = a->diag; 2749b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 28e11b0e14SHong Zhang if (jj[diag[i]] != i) SETERRQ1(1,"Matrix is missing diagonal number %d",i); 2949b5e25fSSatish Balay } 3049b5e25fSSatish Balay PetscFunctionReturn(0); 3149b5e25fSSatish Balay } 3249b5e25fSSatish Balay 334a2ae208SSatish Balay #undef __FUNCT__ 344a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ" 3549b5e25fSSatish Balay int MatMarkDiagonal_SeqSBAIJ(Mat A) 3649b5e25fSSatish Balay { 37045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 38b424e231SHong Zhang int i,mbs = a->mbs,ierr; 3949b5e25fSSatish Balay 4049b5e25fSSatish Balay PetscFunctionBegin; 4149b5e25fSSatish Balay if (a->diag) PetscFunctionReturn(0); 4249b5e25fSSatish Balay 43b424e231SHong Zhang ierr = PetscMalloc((mbs+1)*sizeof(int),&a->diag);CHKERRQ(ierr); 44b424e231SHong Zhang PetscLogObjectMemory(A,(mbs+1)*sizeof(int)); 45b424e231SHong Zhang for (i=0; i<mbs; i++) a->diag[i] = a->i[i]; 4649b5e25fSSatish Balay PetscFunctionReturn(0); 4749b5e25fSSatish Balay } 4849b5e25fSSatish Balay 494a2ae208SSatish Balay #undef __FUNCT__ 504a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ" 51*4e7234bfSBarry Smith static int MatGetRowIJ_SeqSBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int *ia[],int *ja[],PetscTruth *done) 5249b5e25fSSatish Balay { 53a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 549e37e433SSatish Balay int n = a->mbs,i; 5549b5e25fSSatish Balay 5649b5e25fSSatish Balay PetscFunctionBegin; 57d3e5a4abSHong Zhang *nn = n; 58a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 59a1373b80SHong Zhang 60a6ece127SHong Zhang if (oshift == 1) { 61a6ece127SHong Zhang /* temporarily add 1 to i and j indices */ 62a6ece127SHong Zhang int s_nz = a->i[n]; 63a6ece127SHong Zhang for (i=0; i<s_nz; i++) a->j[i]++; 64a1373b80SHong Zhang for (i=0; i<n+1; i++) a->i[i]++; 65a1373b80SHong Zhang *ia = a->i; *ja = a->j; 66a1373b80SHong Zhang } else { 67a1373b80SHong Zhang *ia = a->i; *ja = a->j; 68a6ece127SHong Zhang } 6949b5e25fSSatish Balay PetscFunctionReturn(0); 7049b5e25fSSatish Balay } 7149b5e25fSSatish Balay 724a2ae208SSatish Balay #undef __FUNCT__ 734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ" 74*4e7234bfSBarry Smith static int MatRestoreRowIJ_SeqSBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int *ia[],int *ja[],PetscTruth *done) 7549b5e25fSSatish Balay { 76b7aaefc3SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 77a15ac5e4SHong Zhang int i,n = a->mbs; 78a6ece127SHong Zhang 7949b5e25fSSatish Balay PetscFunctionBegin; 8049b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 81a6ece127SHong Zhang 82a6ece127SHong Zhang if (oshift == 1) { 83a6ece127SHong Zhang int s_nz = a->i[n]-1; 84a6ece127SHong Zhang for (i=0; i<s_nz; i++) a->j[i]--; 85a6ece127SHong Zhang for (i=0; i<n+1; i++) a->i[i]--; 86a6ece127SHong Zhang } 87a6ece127SHong Zhang PetscFunctionReturn(0); 8849b5e25fSSatish Balay } 8949b5e25fSSatish Balay 904a2ae208SSatish Balay #undef __FUNCT__ 914a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_SeqSBAIJ" 9249b5e25fSSatish Balay int MatGetBlockSize_SeqSBAIJ(Mat mat,int *bs) 9349b5e25fSSatish Balay { 9449b5e25fSSatish Balay Mat_SeqSBAIJ *sbaij = (Mat_SeqSBAIJ*)mat->data; 9549b5e25fSSatish Balay 9649b5e25fSSatish Balay PetscFunctionBegin; 9749b5e25fSSatish Balay *bs = sbaij->bs; 9849b5e25fSSatish Balay PetscFunctionReturn(0); 9949b5e25fSSatish Balay } 10049b5e25fSSatish Balay 1014a2ae208SSatish Balay #undef __FUNCT__ 1024a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ" 10349b5e25fSSatish Balay int MatDestroy_SeqSBAIJ(Mat A) 10449b5e25fSSatish Balay { 10549b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 10649b5e25fSSatish Balay int ierr; 10749b5e25fSSatish Balay 10849b5e25fSSatish Balay PetscFunctionBegin; 10949b5e25fSSatish Balay #if defined(PETSC_USE_LOG) 110b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%d, s_NZ=%d",A->m,a->s_nz); 11149b5e25fSSatish Balay #endif 11249b5e25fSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); 11349b5e25fSSatish Balay if (!a->singlemalloc) { 11449b5e25fSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); 11563c8bf9fSHong Zhang ierr = PetscFree(a->j);CHKERRQ(ierr); 11649b5e25fSSatish Balay } 11749b5e25fSSatish Balay if (a->row) { 11849b5e25fSSatish Balay ierr = ISDestroy(a->row);CHKERRQ(ierr); 11949b5e25fSSatish Balay } 12049b5e25fSSatish Balay if (a->diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 12149b5e25fSSatish Balay if (a->ilen) {ierr = PetscFree(a->ilen);CHKERRQ(ierr);} 12249b5e25fSSatish Balay if (a->imax) {ierr = PetscFree(a->imax);CHKERRQ(ierr);} 12349b5e25fSSatish Balay if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 124d59c15a7SBarry Smith if (a->solve_work) {ierr = PetscFree(a->solve_work);CHKERRQ(ierr);} 125d59c15a7SBarry Smith if (a->solves_work) {ierr = PetscFree(a->solves_work);CHKERRQ(ierr);} 126d59c15a7SBarry Smith if (a->mult_work) {ierr = PetscFree(a->mult_work);CHKERRQ(ierr);} 12749b5e25fSSatish Balay if (a->saved_values) {ierr = PetscFree(a->saved_values);CHKERRQ(ierr);} 128c4319e64SHong Zhang if (a->xtoy) {ierr = PetscFree(a->xtoy);CHKERRQ(ierr);} 1291a3463dfSHong Zhang 1301a3463dfSHong Zhang if (a->inew){ 1311a3463dfSHong Zhang ierr = PetscFree(a->inew);CHKERRQ(ierr); 1321a3463dfSHong Zhang a->inew = 0; 1331a3463dfSHong Zhang } 13449b5e25fSSatish Balay ierr = PetscFree(a);CHKERRQ(ierr); 13549b5e25fSSatish Balay PetscFunctionReturn(0); 13649b5e25fSSatish Balay } 13749b5e25fSSatish Balay 1384a2ae208SSatish Balay #undef __FUNCT__ 1394a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ" 14049b5e25fSSatish Balay int MatSetOption_SeqSBAIJ(Mat A,MatOption op) 14149b5e25fSSatish Balay { 142045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 14349b5e25fSSatish Balay 14449b5e25fSSatish Balay PetscFunctionBegin; 1454d9d31abSKris Buschelman switch (op) { 1464d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 1474d9d31abSKris Buschelman a->roworiented = PETSC_TRUE; 1484d9d31abSKris Buschelman break; 1494d9d31abSKris Buschelman case MAT_COLUMN_ORIENTED: 1504d9d31abSKris Buschelman a->roworiented = PETSC_FALSE; 1514d9d31abSKris Buschelman break; 1524d9d31abSKris Buschelman case MAT_COLUMNS_SORTED: 1534d9d31abSKris Buschelman a->sorted = PETSC_TRUE; 1544d9d31abSKris Buschelman break; 1554d9d31abSKris Buschelman case MAT_COLUMNS_UNSORTED: 1564d9d31abSKris Buschelman a->sorted = PETSC_FALSE; 1574d9d31abSKris Buschelman break; 1584d9d31abSKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1594d9d31abSKris Buschelman a->keepzeroedrows = PETSC_TRUE; 1604d9d31abSKris Buschelman break; 1614d9d31abSKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1624d9d31abSKris Buschelman a->nonew = 1; 1634d9d31abSKris Buschelman break; 1644d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1654d9d31abSKris Buschelman a->nonew = -1; 1664d9d31abSKris Buschelman break; 1674d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1684d9d31abSKris Buschelman a->nonew = -2; 1694d9d31abSKris Buschelman break; 1704d9d31abSKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1714d9d31abSKris Buschelman a->nonew = 0; 1724d9d31abSKris Buschelman break; 1734d9d31abSKris Buschelman case MAT_ROWS_SORTED: 1744d9d31abSKris Buschelman case MAT_ROWS_UNSORTED: 1754d9d31abSKris Buschelman case MAT_YES_NEW_DIAGONALS: 1764d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1774d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 178b0a32e0cSBarry Smith PetscLogInfo(A,"MatSetOption_SeqSBAIJ:Option ignored\n"); 1794d9d31abSKris Buschelman break; 1804d9d31abSKris Buschelman case MAT_NO_NEW_DIAGONALS: 18129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1824d9d31abSKris Buschelman default: 18329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 18449b5e25fSSatish Balay } 18549b5e25fSSatish Balay PetscFunctionReturn(0); 18649b5e25fSSatish Balay } 18749b5e25fSSatish Balay 1884a2ae208SSatish Balay #undef __FUNCT__ 1894a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ" 19087828ca2SBarry Smith int MatGetRow_SeqSBAIJ(Mat A,int row,int *ncols,int **cols,PetscScalar **v) 19149b5e25fSSatish Balay { 19249b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 19382502324SSatish Balay int itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*cols_i,bs2,ierr; 19449b5e25fSSatish Balay MatScalar *aa,*aa_i; 19587828ca2SBarry Smith PetscScalar *v_i; 19649b5e25fSSatish Balay 19749b5e25fSSatish Balay PetscFunctionBegin; 19849b5e25fSSatish Balay bs = a->bs; 19949b5e25fSSatish Balay ai = a->i; 20049b5e25fSSatish Balay aj = a->j; 20149b5e25fSSatish Balay aa = a->a; 20249b5e25fSSatish Balay bs2 = a->bs2; 20349b5e25fSSatish Balay 204c464158bSHong Zhang if (row < 0 || row >= A->m) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row out of range"); 20549b5e25fSSatish Balay 20649b5e25fSSatish Balay bn = row/bs; /* Block number */ 20749b5e25fSSatish Balay bp = row % bs; /* Block position */ 20849b5e25fSSatish Balay M = ai[bn+1] - ai[bn]; 20949b5e25fSSatish Balay *ncols = bs*M; 21049b5e25fSSatish Balay 21149b5e25fSSatish Balay if (v) { 21249b5e25fSSatish Balay *v = 0; 21349b5e25fSSatish Balay if (*ncols) { 21487828ca2SBarry Smith ierr = PetscMalloc((*ncols+row)*sizeof(PetscScalar),v);CHKERRQ(ierr); 21549b5e25fSSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 21649b5e25fSSatish Balay v_i = *v + i*bs; 21749b5e25fSSatish Balay aa_i = aa + bs2*(ai[bn] + i); 21849b5e25fSSatish Balay for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 21949b5e25fSSatish Balay } 22049b5e25fSSatish Balay } 22149b5e25fSSatish Balay } 22249b5e25fSSatish Balay 22349b5e25fSSatish Balay if (cols) { 22449b5e25fSSatish Balay *cols = 0; 22549b5e25fSSatish Balay if (*ncols) { 22682502324SSatish Balay ierr = PetscMalloc((*ncols+row)*sizeof(int),cols);CHKERRQ(ierr); 22749b5e25fSSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 22849b5e25fSSatish Balay cols_i = *cols + i*bs; 22949b5e25fSSatish Balay itmp = bs*aj[ai[bn] + i]; 23049b5e25fSSatish Balay for (j=0; j<bs; j++) {cols_i[j] = itmp++;} 23149b5e25fSSatish Balay } 23249b5e25fSSatish Balay } 23349b5e25fSSatish Balay } 23449b5e25fSSatish Balay 23549b5e25fSSatish Balay /*search column A(0:row-1,row) (=A(row,0:row-1)). Could be expensive! */ 2365ddb2528SHong Zhang /* this segment is currently removed, so only entries in the upper triangle are obtained */ 2375ddb2528SHong Zhang #ifdef column_search 23849b5e25fSSatish Balay v_i = *v + M*bs; 23949b5e25fSSatish Balay cols_i = *cols + M*bs; 24049b5e25fSSatish Balay for (i=0; i<bn; i++){ /* for each block row */ 24149b5e25fSSatish Balay M = ai[i+1] - ai[i]; 24249b5e25fSSatish Balay for (j=0; j<M; j++){ 24349b5e25fSSatish Balay itmp = aj[ai[i] + j]; /* block column value */ 24449b5e25fSSatish Balay if (itmp == bn){ 24549b5e25fSSatish Balay aa_i = aa + bs2*(ai[i] + j) + bs*bp; 24649b5e25fSSatish Balay for (k=0; k<bs; k++) { 24749b5e25fSSatish Balay *cols_i++ = i*bs+k; 24849b5e25fSSatish Balay *v_i++ = aa_i[k]; 24949b5e25fSSatish Balay } 25049b5e25fSSatish Balay *ncols += bs; 25149b5e25fSSatish Balay break; 25249b5e25fSSatish Balay } 25349b5e25fSSatish Balay } 25449b5e25fSSatish Balay } 2555ddb2528SHong Zhang #endif 25649b5e25fSSatish Balay 25749b5e25fSSatish Balay PetscFunctionReturn(0); 25849b5e25fSSatish Balay } 25949b5e25fSSatish Balay 2604a2ae208SSatish Balay #undef __FUNCT__ 2614a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ" 26287828ca2SBarry Smith int MatRestoreRow_SeqSBAIJ(Mat A,int row,int *nz,int **idx,PetscScalar **v) 26349b5e25fSSatish Balay { 26449b5e25fSSatish Balay int ierr; 26549b5e25fSSatish Balay 26649b5e25fSSatish Balay PetscFunctionBegin; 26749b5e25fSSatish Balay if (idx) {if (*idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}} 26849b5e25fSSatish Balay if (v) {if (*v) {ierr = PetscFree(*v);CHKERRQ(ierr);}} 26949b5e25fSSatish Balay PetscFunctionReturn(0); 27049b5e25fSSatish Balay } 27149b5e25fSSatish Balay 2724a2ae208SSatish Balay #undef __FUNCT__ 2734a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ" 27449b5e25fSSatish Balay int MatTranspose_SeqSBAIJ(Mat A,Mat *B) 27549b5e25fSSatish Balay { 2768115998fSBarry Smith int ierr; 27749b5e25fSSatish Balay PetscFunctionBegin; 278999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 2798115998fSBarry Smith PetscFunctionReturn(0); 28049b5e25fSSatish Balay } 28149b5e25fSSatish Balay 2824a2ae208SSatish Balay #undef __FUNCT__ 2834a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Binary" 284b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_Binary(Mat A,PetscViewer viewer) 28549b5e25fSSatish Balay { 28649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 28749b5e25fSSatish Balay int i,fd,*col_lens,ierr,bs = a->bs,count,*jj,j,k,l,bs2=a->bs2; 28887828ca2SBarry Smith PetscScalar *aa; 28949b5e25fSSatish Balay FILE *file; 29049b5e25fSSatish Balay 29149b5e25fSSatish Balay PetscFunctionBegin; 292b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 29382502324SSatish Balay ierr = PetscMalloc((4+A->m)*sizeof(int),&col_lens);CHKERRQ(ierr); 294552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 29549b5e25fSSatish Balay 296c464158bSHong Zhang col_lens[1] = A->m; 297c464158bSHong Zhang col_lens[2] = A->m; 29849b5e25fSSatish Balay col_lens[3] = a->s_nz*bs2; 29949b5e25fSSatish Balay 30049b5e25fSSatish Balay /* store lengths of each row and write (including header) to file */ 30149b5e25fSSatish Balay count = 0; 30249b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 30349b5e25fSSatish Balay for (j=0; j<bs; j++) { 30449b5e25fSSatish Balay col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 30549b5e25fSSatish Balay } 30649b5e25fSSatish Balay } 307c464158bSHong Zhang ierr = PetscBinaryWrite(fd,col_lens,4+A->m,PETSC_INT,1);CHKERRQ(ierr); 30849b5e25fSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 30949b5e25fSSatish Balay 31049b5e25fSSatish Balay /* store column indices (zero start index) */ 31182502324SSatish Balay ierr = PetscMalloc((a->s_nz+1)*bs2*sizeof(int),&jj);CHKERRQ(ierr); 31249b5e25fSSatish Balay count = 0; 31349b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 31449b5e25fSSatish Balay for (j=0; j<bs; j++) { 31549b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 31649b5e25fSSatish Balay for (l=0; l<bs; l++) { 31749b5e25fSSatish Balay jj[count++] = bs*a->j[k] + l; 31849b5e25fSSatish Balay } 31949b5e25fSSatish Balay } 32049b5e25fSSatish Balay } 32149b5e25fSSatish Balay } 32249b5e25fSSatish Balay ierr = PetscBinaryWrite(fd,jj,bs2*a->s_nz,PETSC_INT,0);CHKERRQ(ierr); 32349b5e25fSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 32449b5e25fSSatish Balay 32549b5e25fSSatish Balay /* store nonzero values */ 32687828ca2SBarry Smith ierr = PetscMalloc((a->s_nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 32749b5e25fSSatish Balay count = 0; 32849b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 32949b5e25fSSatish Balay for (j=0; j<bs; j++) { 33049b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 33149b5e25fSSatish Balay for (l=0; l<bs; l++) { 33249b5e25fSSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 33349b5e25fSSatish Balay } 33449b5e25fSSatish Balay } 33549b5e25fSSatish Balay } 33649b5e25fSSatish Balay } 33749b5e25fSSatish Balay ierr = PetscBinaryWrite(fd,aa,bs2*a->s_nz,PETSC_SCALAR,0);CHKERRQ(ierr); 33849b5e25fSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 33949b5e25fSSatish Balay 340b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 34149b5e25fSSatish Balay if (file) { 34249b5e25fSSatish Balay fprintf(file,"-matload_block_size %d\n",a->bs); 34349b5e25fSSatish Balay } 34449b5e25fSSatish Balay PetscFunctionReturn(0); 34549b5e25fSSatish Balay } 34649b5e25fSSatish Balay 3474a2ae208SSatish Balay #undef __FUNCT__ 3484a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII" 349b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 35049b5e25fSSatish Balay { 35149b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 352fb9695e5SSatish Balay int ierr,i,j,bs = a->bs,k,l,bs2=a->bs2; 353fb9695e5SSatish Balay char *name; 354f3ef73ceSBarry Smith PetscViewerFormat format; 35549b5e25fSSatish Balay 35649b5e25fSSatish Balay PetscFunctionBegin; 35780fe4e49SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 358b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 359456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 360b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 361fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 36229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Matlab format not supported"); 363fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 364b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 36549b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 36649b5e25fSSatish Balay for (j=0; j<bs; j++) { 367b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %d:",i*bs+j);CHKERRQ(ierr); 36849b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 36949b5e25fSSatish Balay for (l=0; l<bs; l++) { 37049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 37149b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 37262b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g + %g i) ",bs*a->j[k]+l, 37349b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 37449b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 37562b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g - %g i) ",bs*a->j[k]+l, 37649b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 37749b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 37862b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 37949b5e25fSSatish Balay } 38049b5e25fSSatish Balay #else 38149b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 38262b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 38349b5e25fSSatish Balay } 38449b5e25fSSatish Balay #endif 38549b5e25fSSatish Balay } 38649b5e25fSSatish Balay } 387b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 38849b5e25fSSatish Balay } 38949b5e25fSSatish Balay } 390b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 39149b5e25fSSatish Balay } else { 392b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 39349b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 39449b5e25fSSatish Balay for (j=0; j<bs; j++) { 395b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %d:",i*bs+j);CHKERRQ(ierr); 39649b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 39749b5e25fSSatish Balay for (l=0; l<bs; l++) { 39849b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 39949b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 40062b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g + %g i) ",bs*a->j[k]+l, 40149b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40249b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 40362b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g - %g i) ",bs*a->j[k]+l, 40449b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40549b5e25fSSatish Balay } else { 40662b941d6SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%d, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40749b5e25fSSatish Balay } 40849b5e25fSSatish Balay #else 409b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 41049b5e25fSSatish Balay #endif 41149b5e25fSSatish Balay } 41249b5e25fSSatish Balay } 413b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 41449b5e25fSSatish Balay } 41549b5e25fSSatish Balay } 416b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 41749b5e25fSSatish Balay } 418b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 41949b5e25fSSatish Balay PetscFunctionReturn(0); 42049b5e25fSSatish Balay } 42149b5e25fSSatish Balay 4224a2ae208SSatish Balay #undef __FUNCT__ 4234a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom" 424b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 42549b5e25fSSatish Balay { 42649b5e25fSSatish Balay Mat A = (Mat) Aa; 42749b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 42849b5e25fSSatish Balay int row,ierr,i,j,k,l,mbs=a->mbs,color,bs=a->bs,bs2=a->bs2,rank; 42949b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 43049b5e25fSSatish Balay MatScalar *aa; 43149b5e25fSSatish Balay MPI_Comm comm; 432b0a32e0cSBarry Smith PetscViewer viewer; 43349b5e25fSSatish Balay 43449b5e25fSSatish Balay PetscFunctionBegin; 43549b5e25fSSatish Balay /* 43649b5e25fSSatish Balay This is nasty. If this is called from an originally parallel matrix 43749b5e25fSSatish Balay then all processes call this,but only the first has the matrix so the 43849b5e25fSSatish Balay rest should return immediately. 43949b5e25fSSatish Balay */ 44049b5e25fSSatish Balay ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr); 44149b5e25fSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 44249b5e25fSSatish Balay if (rank) PetscFunctionReturn(0); 44349b5e25fSSatish Balay 44449b5e25fSSatish Balay ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 44549b5e25fSSatish Balay 446b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 447b0a32e0cSBarry Smith PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric"); 44849b5e25fSSatish Balay 44949b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 450b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 45149b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 45249b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 453c464158bSHong Zhang y_l = A->m - row - 1.0; y_r = y_l + 1.0; 45449b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 45549b5e25fSSatish Balay aa = a->a + j*bs2; 45649b5e25fSSatish Balay for (k=0; k<bs; k++) { 45749b5e25fSSatish Balay for (l=0; l<bs; l++) { 45849b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 459b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 46049b5e25fSSatish Balay } 46149b5e25fSSatish Balay } 46249b5e25fSSatish Balay } 46349b5e25fSSatish Balay } 464b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 46549b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 46649b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 467c464158bSHong Zhang y_l = A->m - row - 1.0; y_r = y_l + 1.0; 46849b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 46949b5e25fSSatish Balay aa = a->a + j*bs2; 47049b5e25fSSatish Balay for (k=0; k<bs; k++) { 47149b5e25fSSatish Balay for (l=0; l<bs; l++) { 47249b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 473b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 47449b5e25fSSatish Balay } 47549b5e25fSSatish Balay } 47649b5e25fSSatish Balay } 47749b5e25fSSatish Balay } 47849b5e25fSSatish Balay 479b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 48049b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 48149b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 482c464158bSHong Zhang y_l = A->m - row - 1.0; y_r = y_l + 1.0; 48349b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 48449b5e25fSSatish Balay aa = a->a + j*bs2; 48549b5e25fSSatish Balay for (k=0; k<bs; k++) { 48649b5e25fSSatish Balay for (l=0; l<bs; l++) { 48749b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 488b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 48949b5e25fSSatish Balay } 49049b5e25fSSatish Balay } 49149b5e25fSSatish Balay } 49249b5e25fSSatish Balay } 49349b5e25fSSatish Balay PetscFunctionReturn(0); 49449b5e25fSSatish Balay } 49549b5e25fSSatish Balay 4964a2ae208SSatish Balay #undef __FUNCT__ 4974a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw" 498b0a32e0cSBarry Smith static int MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 49949b5e25fSSatish Balay { 50049b5e25fSSatish Balay int ierr; 50149b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 502b0a32e0cSBarry Smith PetscDraw draw; 50349b5e25fSSatish Balay PetscTruth isnull; 50449b5e25fSSatish Balay 50549b5e25fSSatish Balay PetscFunctionBegin; 50649b5e25fSSatish Balay 507b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 508b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 50949b5e25fSSatish Balay 51049b5e25fSSatish Balay ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 511c464158bSHong Zhang xr = A->m; yr = A->m; h = yr/10.0; w = xr/10.0; 51249b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 513b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 514b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 51549b5e25fSSatish Balay ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 51649b5e25fSSatish Balay PetscFunctionReturn(0); 51749b5e25fSSatish Balay } 51849b5e25fSSatish Balay 5194a2ae208SSatish Balay #undef __FUNCT__ 5204a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ" 521b0a32e0cSBarry Smith int MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 52249b5e25fSSatish Balay { 52349b5e25fSSatish Balay int ierr; 52449b5e25fSSatish Balay PetscTruth issocket,isascii,isbinary,isdraw; 52549b5e25fSSatish Balay 52649b5e25fSSatish Balay PetscFunctionBegin; 527b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 528b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 529fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 530fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 53149b5e25fSSatish Balay if (issocket) { 53229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Socket viewer not supported"); 53349b5e25fSSatish Balay } else if (isascii){ 53449b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 53549b5e25fSSatish Balay } else if (isbinary) { 53649b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Binary(A,viewer);CHKERRQ(ierr); 53749b5e25fSSatish Balay } else if (isdraw) { 53849b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr); 53949b5e25fSSatish Balay } else { 540b7aaefc3SHong Zhang SETERRQ1(1,"Viewer type %s not supported by SeqSBAIJ matrices",((PetscObject)viewer)->type_name); 54149b5e25fSSatish Balay } 54249b5e25fSSatish Balay PetscFunctionReturn(0); 54349b5e25fSSatish Balay } 54449b5e25fSSatish Balay 54549b5e25fSSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ" 548f15d580aSBarry Smith int MatGetValues_SeqSBAIJ(Mat A,int m,const int im[],int n,const int in[],PetscScalar v[]) 54949b5e25fSSatish Balay { 550045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 55149b5e25fSSatish Balay int *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 55249b5e25fSSatish Balay int *ai = a->i,*ailen = a->ilen; 55349b5e25fSSatish Balay int brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2; 55449b5e25fSSatish Balay MatScalar *ap,*aa = a->a,zero = 0.0; 55549b5e25fSSatish Balay 55649b5e25fSSatish Balay PetscFunctionBegin; 55749b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 55849b5e25fSSatish Balay row = im[k]; brow = row/bs; 559590ac198SBarry Smith if (row < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",row); 560590ac198SBarry Smith if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",row,A->m-1); 56149b5e25fSSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 56249b5e25fSSatish Balay nrow = ailen[brow]; 56349b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 564590ac198SBarry Smith if (in[l] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %d",in[l]); 565590ac198SBarry Smith if (in[l] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[l],A->n-1); 56649b5e25fSSatish Balay col = in[l] ; 56749b5e25fSSatish Balay bcol = col/bs; 56849b5e25fSSatish Balay cidx = col%bs; 56949b5e25fSSatish Balay ridx = row%bs; 57049b5e25fSSatish Balay high = nrow; 57149b5e25fSSatish Balay low = 0; /* assume unsorted */ 57249b5e25fSSatish Balay while (high-low > 5) { 57349b5e25fSSatish Balay t = (low+high)/2; 57449b5e25fSSatish Balay if (rp[t] > bcol) high = t; 57549b5e25fSSatish Balay else low = t; 57649b5e25fSSatish Balay } 57749b5e25fSSatish Balay for (i=low; i<high; i++) { 57849b5e25fSSatish Balay if (rp[i] > bcol) break; 57949b5e25fSSatish Balay if (rp[i] == bcol) { 58049b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 58149b5e25fSSatish Balay goto finished; 58249b5e25fSSatish Balay } 58349b5e25fSSatish Balay } 58449b5e25fSSatish Balay *v++ = zero; 58549b5e25fSSatish Balay finished:; 58649b5e25fSSatish Balay } 58749b5e25fSSatish Balay } 58849b5e25fSSatish Balay PetscFunctionReturn(0); 58949b5e25fSSatish Balay } 59049b5e25fSSatish Balay 59149b5e25fSSatish Balay 5924a2ae208SSatish Balay #undef __FUNCT__ 5934a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ" 594f15d580aSBarry Smith int MatSetValuesBlocked_SeqSBAIJ(Mat A,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode is) 59549b5e25fSSatish Balay { 5960880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 5970880e062SHong Zhang int *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted; 5980880e062SHong Zhang int *imax=a->imax,*ai=a->i,*ailen=a->ilen; 5990880e062SHong Zhang int *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=a->bs,stepval,ierr; 6000880e062SHong Zhang PetscTruth roworiented=a->roworiented; 601f15d580aSBarry Smith const MatScalar *value = v; 602f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 6030880e062SHong Zhang 60449b5e25fSSatish Balay PetscFunctionBegin; 6050880e062SHong Zhang if (roworiented) { 6060880e062SHong Zhang stepval = (n-1)*bs; 6070880e062SHong Zhang } else { 6080880e062SHong Zhang stepval = (m-1)*bs; 6090880e062SHong Zhang } 6100880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 6110880e062SHong Zhang row = im[k]; 6120880e062SHong Zhang if (row < 0) continue; 6130880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 614590ac198SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",row,a->mbs-1); 6150880e062SHong Zhang #endif 6160880e062SHong Zhang rp = aj + ai[row]; 6170880e062SHong Zhang ap = aa + bs2*ai[row]; 6180880e062SHong Zhang rmax = imax[row]; 6190880e062SHong Zhang nrow = ailen[row]; 6200880e062SHong Zhang low = 0; 6210880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 6220880e062SHong Zhang if (in[l] < 0) continue; 6230880e062SHong Zhang #if defined(PETSC_USE_BOPT_g) 624590ac198SBarry Smith if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",col,a->nbs-1); 6250880e062SHong Zhang #endif 6260880e062SHong Zhang col = in[l]; 6270880e062SHong Zhang if (col < row) continue; /* ignore lower triangular block */ 6280880e062SHong Zhang if (roworiented) { 6290880e062SHong Zhang value = v + k*(stepval+bs)*bs + l*bs; 6300880e062SHong Zhang } else { 6310880e062SHong Zhang value = v + l*(stepval+bs)*bs + k*bs; 6320880e062SHong Zhang } 6330880e062SHong Zhang if (!sorted) low = 0; high = nrow; 6340880e062SHong Zhang while (high-low > 7) { 6350880e062SHong Zhang t = (low+high)/2; 6360880e062SHong Zhang if (rp[t] > col) high = t; 6370880e062SHong Zhang else low = t; 6380880e062SHong Zhang } 6390880e062SHong Zhang for (i=low; i<high; i++) { 6400880e062SHong Zhang if (rp[i] > col) break; 6410880e062SHong Zhang if (rp[i] == col) { 6420880e062SHong Zhang bap = ap + bs2*i; 6430880e062SHong Zhang if (roworiented) { 6440880e062SHong Zhang if (is == ADD_VALUES) { 6450880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6460880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6470880e062SHong Zhang bap[jj] += *value++; 6480880e062SHong Zhang } 6490880e062SHong Zhang } 6500880e062SHong Zhang } else { 6510880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6520880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6530880e062SHong Zhang bap[jj] = *value++; 6540880e062SHong Zhang } 6550880e062SHong Zhang } 6560880e062SHong Zhang } 6570880e062SHong Zhang } else { 6580880e062SHong Zhang if (is == ADD_VALUES) { 6590880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6600880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6610880e062SHong Zhang *bap++ += *value++; 6620880e062SHong Zhang } 6630880e062SHong Zhang } 6640880e062SHong Zhang } else { 6650880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6660880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6670880e062SHong Zhang *bap++ = *value++; 6680880e062SHong Zhang } 6690880e062SHong Zhang } 6700880e062SHong Zhang } 6710880e062SHong Zhang } 6720880e062SHong Zhang goto noinsert2; 6730880e062SHong Zhang } 6740880e062SHong Zhang } 6750880e062SHong Zhang if (nonew == 1) goto noinsert2; 6760880e062SHong Zhang else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); 6770880e062SHong Zhang if (nrow >= rmax) { 6780880e062SHong Zhang /* there is no extra room in row, therefore enlarge */ 6790880e062SHong Zhang int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 6800880e062SHong Zhang MatScalar *new_a; 6810880e062SHong Zhang 6820880e062SHong Zhang if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); 6830880e062SHong Zhang 6840880e062SHong Zhang /* malloc new storage space */ 6850880e062SHong Zhang len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); 6860880e062SHong Zhang ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); 6870880e062SHong Zhang new_j = (int*)(new_a + bs2*new_nz); 6880880e062SHong Zhang new_i = new_j + new_nz; 6890880e062SHong Zhang 6900880e062SHong Zhang /* copy over old data into new slots */ 6910880e062SHong Zhang for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];} 6920880e062SHong Zhang for (ii=row+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} 6930880e062SHong Zhang ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int));CHKERRQ(ierr); 6940880e062SHong Zhang len = (new_nz - CHUNKSIZE - ai[row] - nrow); 6950880e062SHong Zhang ierr = PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(int));CHKERRQ(ierr); 6960880e062SHong Zhang ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); 6970880e062SHong Zhang ierr = PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); 6980880e062SHong Zhang ierr = PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); 6990880e062SHong Zhang /* free up old matrix storage */ 7000880e062SHong Zhang ierr = PetscFree(a->a);CHKERRQ(ierr); 7010880e062SHong Zhang if (!a->singlemalloc) { 7020880e062SHong Zhang ierr = PetscFree(a->i);CHKERRQ(ierr); 7030880e062SHong Zhang ierr = PetscFree(a->j);CHKERRQ(ierr); 7040880e062SHong Zhang } 7050880e062SHong Zhang aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 7060880e062SHong Zhang a->singlemalloc = PETSC_TRUE; 7070880e062SHong Zhang 7080880e062SHong Zhang rp = aj + ai[row]; ap = aa + bs2*ai[row]; 7090880e062SHong Zhang rmax = imax[row] = imax[row] + CHUNKSIZE; 7100880e062SHong Zhang PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); 7110880e062SHong Zhang a->s_maxnz += bs2*CHUNKSIZE; 7120880e062SHong Zhang a->reallocs++; 7130880e062SHong Zhang a->s_nz++; 7140880e062SHong Zhang } 7150880e062SHong Zhang N = nrow++ - 1; 7160880e062SHong Zhang /* shift up all the later entries in this row */ 7170880e062SHong Zhang for (ii=N; ii>=i; ii--) { 7180880e062SHong Zhang rp[ii+1] = rp[ii]; 7190880e062SHong Zhang ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 7200880e062SHong Zhang } 7210880e062SHong Zhang if (N >= i) { 7220880e062SHong Zhang ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 7230880e062SHong Zhang } 7240880e062SHong Zhang rp[i] = col; 7250880e062SHong Zhang bap = ap + bs2*i; 7260880e062SHong Zhang if (roworiented) { 7270880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7280880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 7290880e062SHong Zhang bap[jj] = *value++; 7300880e062SHong Zhang } 7310880e062SHong Zhang } 7320880e062SHong Zhang } else { 7330880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7340880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7350880e062SHong Zhang *bap++ = *value++; 7360880e062SHong Zhang } 7370880e062SHong Zhang } 7380880e062SHong Zhang } 7390880e062SHong Zhang noinsert2:; 7400880e062SHong Zhang low = i; 7410880e062SHong Zhang } 7420880e062SHong Zhang ailen[row] = nrow; 7430880e062SHong Zhang } 7440880e062SHong Zhang PetscFunctionReturn(0); 74549b5e25fSSatish Balay } 74649b5e25fSSatish Balay 7474a2ae208SSatish Balay #undef __FUNCT__ 7484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ" 74949b5e25fSSatish Balay int MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 75049b5e25fSSatish Balay { 75149b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 75249b5e25fSSatish Balay int fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 753c464158bSHong Zhang int m = A->m,*ip,N,*ailen = a->ilen; 75449b5e25fSSatish Balay int mbs = a->mbs,bs2 = a->bs2,rmax = 0,ierr; 75549b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 75627f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS) 757cf4441caSHong Zhang PetscTruth flag; 758cf4441caSHong Zhang #endif 75949b5e25fSSatish Balay 76049b5e25fSSatish Balay PetscFunctionBegin; 76149b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 76249b5e25fSSatish Balay 76349b5e25fSSatish Balay if (m) rmax = ailen[0]; 76449b5e25fSSatish Balay for (i=1; i<mbs; i++) { 76549b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 76649b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 76749b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 76849b5e25fSSatish Balay if (fshift) { 76949b5e25fSSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 77049b5e25fSSatish Balay N = ailen[i]; 77149b5e25fSSatish Balay for (j=0; j<N; j++) { 77249b5e25fSSatish Balay ip[j-fshift] = ip[j]; 77349b5e25fSSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 77449b5e25fSSatish Balay } 77549b5e25fSSatish Balay } 77649b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 77749b5e25fSSatish Balay } 77849b5e25fSSatish Balay if (mbs) { 77949b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 78049b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 78149b5e25fSSatish Balay } 78249b5e25fSSatish Balay /* reset ilen and imax for each row */ 78349b5e25fSSatish Balay for (i=0; i<mbs; i++) { 78449b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 78549b5e25fSSatish Balay } 78649b5e25fSSatish Balay a->s_nz = ai[mbs]; 78749b5e25fSSatish Balay 788b424e231SHong Zhang /* diagonals may have moved, reset it */ 789b424e231SHong Zhang if (a->diag) { 790b424e231SHong Zhang ierr = PetscMemcpy(a->diag,ai,(mbs+1)*sizeof(int));CHKERRQ(ierr); 79149b5e25fSSatish Balay } 792b0a32e0cSBarry Smith PetscLogInfo(A,"MatAssemblyEnd_SeqSBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n", 793c464158bSHong Zhang m,A->m,a->bs,fshift*bs2,a->s_nz*bs2); 794b0a32e0cSBarry Smith PetscLogInfo(A,"MatAssemblyEnd_SeqSBAIJ:Number of mallocs during MatSetValues is %d\n", 79549b5e25fSSatish Balay a->reallocs); 796b0a32e0cSBarry Smith PetscLogInfo(A,"MatAssemblyEnd_SeqSBAIJ:Most nonzeros blocks in any row is %d\n",rmax); 79749b5e25fSSatish Balay a->reallocs = 0; 79849b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 79949b5e25fSSatish Balay 800cf4441caSHong Zhang #if defined(PETSC_HAVE_SPOOLES) 8012c535e4dSHong Zhang ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 802cf4441caSHong Zhang if (flag) { ierr = MatUseSpooles_SeqSBAIJ(A);CHKERRQ(ierr); } 803cf4441caSHong Zhang #endif 80427f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS) 80527f1aa60SHong Zhang ierr = PetscOptionsHasName(A->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr); 80627f1aa60SHong Zhang if (flag) { ierr = MatUseMUMPS_MPIAIJ(A);CHKERRQ(ierr); } 80727f1aa60SHong Zhang #endif 808cf4441caSHong Zhang 80949b5e25fSSatish Balay PetscFunctionReturn(0); 81049b5e25fSSatish Balay } 81149b5e25fSSatish Balay 81249b5e25fSSatish Balay /* 81349b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 81449b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 81549b5e25fSSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 81649b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 81749b5e25fSSatish Balay */ 8184a2ae208SSatish Balay #undef __FUNCT__ 8194a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks" 820db2f66daSBarry Smith int MatZeroRows_SeqSBAIJ_Check_Blocks(int idx[],int n,int bs,int sizes[], int *bs_max) 82149b5e25fSSatish Balay { 82249b5e25fSSatish Balay int i,j,k,row; 82349b5e25fSSatish Balay PetscTruth flg; 82449b5e25fSSatish Balay 82549b5e25fSSatish Balay PetscFunctionBegin; 82649b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 82749b5e25fSSatish Balay row = idx[i]; 82849b5e25fSSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 82949b5e25fSSatish Balay sizes[j] = 1; 83049b5e25fSSatish Balay i++; 83149b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 83249b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 83349b5e25fSSatish Balay i++; 83449b5e25fSSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 83549b5e25fSSatish Balay flg = PETSC_TRUE; 83649b5e25fSSatish Balay for (k=1; k<bs; k++) { 83749b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 83849b5e25fSSatish Balay flg = PETSC_FALSE; 83949b5e25fSSatish Balay break; 84049b5e25fSSatish Balay } 84149b5e25fSSatish Balay } 84249b5e25fSSatish Balay if (flg == PETSC_TRUE) { /* No break in the bs */ 84349b5e25fSSatish Balay sizes[j] = bs; 84449b5e25fSSatish Balay i+= bs; 84549b5e25fSSatish Balay } else { 84649b5e25fSSatish Balay sizes[j] = 1; 84749b5e25fSSatish Balay i++; 84849b5e25fSSatish Balay } 84949b5e25fSSatish Balay } 85049b5e25fSSatish Balay } 85149b5e25fSSatish Balay *bs_max = j; 85249b5e25fSSatish Balay PetscFunctionReturn(0); 85349b5e25fSSatish Balay } 85449b5e25fSSatish Balay 8554a2ae208SSatish Balay #undef __FUNCT__ 8564a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ" 857268466fbSBarry Smith int MatZeroRows_SeqSBAIJ(Mat A,IS is,const PetscScalar *diag) 85849b5e25fSSatish Balay { 85949b5e25fSSatish Balay PetscFunctionBegin; 860c0f24835SHong Zhang SETERRQ(PETSC_ERR_SUP,"No support for this function yet"); 86149b5e25fSSatish Balay } 86249b5e25fSSatish Balay 86349b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 86449b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 86549b5e25fSSatish Balay */ 86649b5e25fSSatish Balay 8674a2ae208SSatish Balay #undef __FUNCT__ 8684a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ" 869f15d580aSBarry Smith int MatSetValues_SeqSBAIJ(Mat A,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode is) 87049b5e25fSSatish Balay { 87149b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 87249b5e25fSSatish Balay int *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted; 87349b5e25fSSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 87449b5e25fSSatish Balay int *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol; 87549b5e25fSSatish Balay int ridx,cidx,bs2=a->bs2,ierr; 87649b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 87749b5e25fSSatish Balay 87849b5e25fSSatish Balay PetscFunctionBegin; 87949b5e25fSSatish Balay 88049b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 88149b5e25fSSatish Balay row = im[k]; /* row number */ 88249b5e25fSSatish Balay brow = row/bs; /* block row number */ 88349b5e25fSSatish Balay if (row < 0) continue; 88449b5e25fSSatish Balay #if defined(PETSC_USE_BOPT_g) 885590ac198SBarry Smith if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",row,A->m-1); 88649b5e25fSSatish Balay #endif 88749b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 88849b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 88949b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 89049b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 89149b5e25fSSatish Balay low = 0; 89249b5e25fSSatish Balay 89349b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 89449b5e25fSSatish Balay if (in[l] < 0) continue; 89549b5e25fSSatish Balay #if defined(PETSC_USE_BOPT_g) 896590ac198SBarry Smith if (in[l] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[l],A->m-1); 89749b5e25fSSatish Balay #endif 89849b5e25fSSatish Balay col = in[l]; 89949b5e25fSSatish Balay bcol = col/bs; /* block col number */ 90049b5e25fSSatish Balay 90149b5e25fSSatish Balay if (brow <= bcol){ 90249b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 9038549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)){ 90449b5e25fSSatish Balay /* element value a(k,l) */ 90549b5e25fSSatish Balay if (roworiented) { 90649b5e25fSSatish Balay value = v[l + k*n]; 90749b5e25fSSatish Balay } else { 90849b5e25fSSatish Balay value = v[k + l*m]; 90949b5e25fSSatish Balay } 91049b5e25fSSatish Balay 91149b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 91249b5e25fSSatish Balay if (!sorted) low = 0; high = nrow; 91349b5e25fSSatish Balay while (high-low > 7) { 91449b5e25fSSatish Balay t = (low+high)/2; 91549b5e25fSSatish Balay if (rp[t] > bcol) high = t; 91649b5e25fSSatish Balay else low = t; 91749b5e25fSSatish Balay } 91849b5e25fSSatish Balay for (i=low; i<high; i++) { 91949b5e25fSSatish Balay /* printf("The loop of i=low.., rp[%d]=%d\n",i,rp[i]); */ 92049b5e25fSSatish Balay if (rp[i] > bcol) break; 92149b5e25fSSatish Balay if (rp[i] == bcol) { 92249b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 92349b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 92449b5e25fSSatish Balay else *bap = value; 9258549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 9268549e402SHong Zhang if (brow == bcol && ridx < cidx){ 9278549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 9288549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 9298549e402SHong Zhang else *bap = value; 9308549e402SHong Zhang } 93149b5e25fSSatish Balay goto noinsert1; 93249b5e25fSSatish Balay } 93349b5e25fSSatish Balay } 93449b5e25fSSatish Balay 93549b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 93629bbc08cSBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); 93749b5e25fSSatish Balay if (nrow >= rmax) { 93849b5e25fSSatish Balay /* there is no extra room in row, therefore enlarge */ 93949b5e25fSSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 94049b5e25fSSatish Balay MatScalar *new_a; 94149b5e25fSSatish Balay 94229bbc08cSBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); 94349b5e25fSSatish Balay 94449b5e25fSSatish Balay /* Malloc new storage space */ 94549b5e25fSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); 94682502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); 94749b5e25fSSatish Balay new_j = (int*)(new_a + bs2*new_nz); 94849b5e25fSSatish Balay new_i = new_j + new_nz; 94949b5e25fSSatish Balay 95049b5e25fSSatish Balay /* copy over old data into new slots */ 95149b5e25fSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} 95249b5e25fSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} 95349b5e25fSSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); 95449b5e25fSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); 95549b5e25fSSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); 95649b5e25fSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); 95749b5e25fSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); 95849b5e25fSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); 95949b5e25fSSatish Balay /* free up old matrix storage */ 96049b5e25fSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); 96149b5e25fSSatish Balay if (!a->singlemalloc) { 96249b5e25fSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); 96349b5e25fSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr); 96449b5e25fSSatish Balay } 96549b5e25fSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 96649b5e25fSSatish Balay a->singlemalloc = PETSC_TRUE; 96749b5e25fSSatish Balay 96849b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 96949b5e25fSSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; 970b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); 97149b5e25fSSatish Balay a->s_maxnz += bs2*CHUNKSIZE; 97249b5e25fSSatish Balay a->reallocs++; 97349b5e25fSSatish Balay a->s_nz++; 97449b5e25fSSatish Balay } 97549b5e25fSSatish Balay 97649b5e25fSSatish Balay N = nrow++ - 1; 97749b5e25fSSatish Balay /* shift up all the later entries in this row */ 97849b5e25fSSatish Balay for (ii=N; ii>=i; ii--) { 97949b5e25fSSatish Balay rp[ii+1] = rp[ii]; 98049b5e25fSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 98149b5e25fSSatish Balay } 98249b5e25fSSatish Balay if (N>=i) { 98349b5e25fSSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 98449b5e25fSSatish Balay } 98549b5e25fSSatish Balay rp[i] = bcol; 98649b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 98749b5e25fSSatish Balay noinsert1:; 98849b5e25fSSatish Balay low = i; 98949b5e25fSSatish Balay /* } */ 9908549e402SHong Zhang } 99149b5e25fSSatish Balay } /* end of if .. if.. */ 99249b5e25fSSatish Balay } /* end of loop over added columns */ 99349b5e25fSSatish Balay ailen[brow] = nrow; 99449b5e25fSSatish Balay } /* end of loop over added rows */ 99549b5e25fSSatish Balay 99649b5e25fSSatish Balay PetscFunctionReturn(0); 99749b5e25fSSatish Balay } 99849b5e25fSSatish Balay 99915e8a5b3SHong Zhang extern int MatCholeskyFactorSymbolic_SeqSBAIJ(Mat,IS,MatFactorInfo*,Mat*); 100015e8a5b3SHong Zhang extern int MatCholeskyFactor_SeqSBAIJ(Mat,IS,MatFactorInfo*); 100149b5e25fSSatish Balay extern int MatIncreaseOverlap_SeqSBAIJ(Mat,int,IS*,int); 100249b5e25fSSatish Balay extern int MatGetSubMatrix_SeqSBAIJ(Mat,IS,IS,int,MatReuse,Mat*); 1003268466fbSBarry Smith extern int MatGetSubMatrices_SeqSBAIJ(Mat,int,const IS[],const IS[],MatReuse,Mat*[]); 100449b5e25fSSatish Balay extern int MatMultTranspose_SeqSBAIJ(Mat,Vec,Vec); 100549b5e25fSSatish Balay extern int MatMultTransposeAdd_SeqSBAIJ(Mat,Vec,Vec,Vec); 1006268466fbSBarry Smith extern int MatScale_SeqSBAIJ(const PetscScalar*,Mat); 100749b5e25fSSatish Balay extern int MatNorm_SeqSBAIJ(Mat,NormType,PetscReal *); 100849b5e25fSSatish Balay extern int MatEqual_SeqSBAIJ(Mat,Mat,PetscTruth*); 100949b5e25fSSatish Balay extern int MatGetDiagonal_SeqSBAIJ(Mat,Vec); 101049b5e25fSSatish Balay extern int MatDiagonalScale_SeqSBAIJ(Mat,Vec,Vec); 101149b5e25fSSatish Balay extern int MatGetInfo_SeqSBAIJ(Mat,MatInfoType,MatInfo *); 101249b5e25fSSatish Balay extern int MatZeroEntries_SeqSBAIJ(Mat); 101313a02c98SHong Zhang extern int MatGetRowMax_SeqSBAIJ(Mat,Vec); 101449b5e25fSSatish Balay 101549b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_N(Mat,Vec,Vec); 101649b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_1(Mat,Vec,Vec); 101749b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_2(Mat,Vec,Vec); 101849b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_3(Mat,Vec,Vec); 101949b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_4(Mat,Vec,Vec); 102049b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_5(Mat,Vec,Vec); 102149b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_6(Mat,Vec,Vec); 102249b5e25fSSatish Balay extern int MatSolve_SeqSBAIJ_7(Mat,Vec,Vec); 102349b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_7(Mat,Vec,Vec); 102449b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_6(Mat,Vec,Vec); 102549b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_5(Mat,Vec,Vec); 102649b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_4(Mat,Vec,Vec); 102749b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_3(Mat,Vec,Vec); 102849b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_2(Mat,Vec,Vec); 102949b5e25fSSatish Balay extern int MatSolveTranspose_SeqSBAIJ_1(Mat,Vec,Vec); 103049b5e25fSSatish Balay 1031d59c15a7SBarry Smith extern int MatSolves_SeqSBAIJ_1(Mat,Vecs,Vecs); 1032d59c15a7SBarry Smith 103307f98182SSatish Balay extern int MatSolve_SeqSBAIJ_1_NaturalOrdering(Mat,Vec,Vec); 103407f98182SSatish Balay extern int MatSolve_SeqSBAIJ_2_NaturalOrdering(Mat,Vec,Vec); 103507f98182SSatish Balay extern int MatSolve_SeqSBAIJ_3_NaturalOrdering(Mat,Vec,Vec); 103607f98182SSatish Balay extern int MatSolve_SeqSBAIJ_4_NaturalOrdering(Mat,Vec,Vec); 103707f98182SSatish Balay extern int MatSolve_SeqSBAIJ_5_NaturalOrdering(Mat,Vec,Vec); 103807f98182SSatish Balay extern int MatSolve_SeqSBAIJ_6_NaturalOrdering(Mat,Vec,Vec); 103907f98182SSatish Balay extern int MatSolve_SeqSBAIJ_7_NaturalOrdering(Mat,Vec,Vec); 104007f98182SSatish Balay extern int MatSolve_SeqSBAIJ_N_NaturalOrdering(Mat,Vec,Vec); 104107f98182SSatish Balay 10425f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat,Mat*); 10435f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat,Mat*); 10445f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat,Mat*); 10455f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat,Mat*); 10465f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat,Mat*); 10475f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat,Mat*); 10485f19b6beSHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat,Mat*); 104957d5e339SHong Zhang extern int MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat,Mat*); 10503e0d88b5SBarry Smith extern int MatGetInertia_SeqSBAIJ(Mat,int*,int*,int*); 105149b5e25fSSatish Balay 105249b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_1(Mat,Vec,Vec); 105349b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_2(Mat,Vec,Vec); 105449b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_3(Mat,Vec,Vec); 105549b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_4(Mat,Vec,Vec); 105649b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_5(Mat,Vec,Vec); 105749b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_6(Mat,Vec,Vec); 105849b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_7(Mat,Vec,Vec); 105949b5e25fSSatish Balay extern int MatMult_SeqSBAIJ_N(Mat,Vec,Vec); 106049b5e25fSSatish Balay 106149b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_1(Mat,Vec,Vec,Vec); 106249b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_2(Mat,Vec,Vec,Vec); 106349b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_3(Mat,Vec,Vec,Vec); 106449b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_4(Mat,Vec,Vec,Vec); 106549b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_5(Mat,Vec,Vec,Vec); 106649b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_6(Mat,Vec,Vec,Vec); 106749b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_7(Mat,Vec,Vec,Vec); 106849b5e25fSSatish Balay extern int MatMultAdd_SeqSBAIJ_N(Mat,Vec,Vec,Vec); 106949b5e25fSSatish Balay 10704d101231SSatish Balay #ifdef HAVE_MatICCFactor 10711a3463dfSHong Zhang /* modefied from MatILUFactor_SeqSBAIJ, needs further work! */ 10724a2ae208SSatish Balay #undef __FUNCT__ 10734d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ" 107415e8a5b3SHong Zhang int MatICCFactor_SeqSBAIJ(Mat inA,IS row,MatFactorInfo *info) 107549b5e25fSSatish Balay { 10764ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 107749b5e25fSSatish Balay Mat outA; 107849b5e25fSSatish Balay int ierr; 107949b5e25fSSatish Balay PetscTruth row_identity,col_identity; 108049b5e25fSSatish Balay 108149b5e25fSSatish Balay PetscFunctionBegin; 10821a3463dfSHong Zhang /* 108329bbc08cSBarry Smith if (level != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 108449b5e25fSSatish Balay ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 108549b5e25fSSatish Balay ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 108649b5e25fSSatish Balay if (!row_identity || !col_identity) { 108729bbc08cSBarry Smith SETERRQ(1,"Row and column permutations must be identity for in-place ICC"); 108849b5e25fSSatish Balay } 10891a3463dfSHong Zhang */ 109049b5e25fSSatish Balay 109149b5e25fSSatish Balay outA = inA; 10921260e1f8SHong Zhang inA->factor = FACTOR_CHOLESKY; 109349b5e25fSSatish Balay 109449b5e25fSSatish Balay if (!a->diag) { 10951a3463dfSHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr); 109649b5e25fSSatish Balay } 109749b5e25fSSatish Balay /* 109849b5e25fSSatish Balay Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver 109949b5e25fSSatish Balay for ILU(0) factorization with natural ordering 110049b5e25fSSatish Balay */ 110149b5e25fSSatish Balay switch (a->bs) { 110249b5e25fSSatish Balay case 1: 11030fe9e5beSBarry Smith inA->ops->solve = MatSolve_SeqSBAIJ_1_NaturalOrdering; 110407f98182SSatish Balay inA->ops->solvetranspose = MatSolve_SeqSBAIJ_1_NaturalOrdering; 1105d59c15a7SBarry Smith inA->ops->solves = MatSolves_SeqSBAIJ_1; 11064d101231SSatish Balay PetscLoginfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering solvetrans BS=1\n"); 110749b5e25fSSatish Balay case 2: 11081a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 11091a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_2_NaturalOrdering; 11101a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_2_NaturalOrdering; 11114d101231SSatish Balay PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=2\n"); 111249b5e25fSSatish Balay break; 111349b5e25fSSatish Balay case 3: 11141a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 11151a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_3_NaturalOrdering; 11161a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_3_NaturalOrdering; 11174d101231SSatish Balay PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=3\n"); 111849b5e25fSSatish Balay break; 111949b5e25fSSatish Balay case 4: 11201a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 11211a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_4_NaturalOrdering; 11221a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_4_NaturalOrdering; 11234d101231SSatish Balay PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=4\n"); 112449b5e25fSSatish Balay break; 112549b5e25fSSatish Balay case 5: 11261a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 11271a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_5_NaturalOrdering; 11281a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_5_NaturalOrdering; 11294d101231SSatish Balay PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=5\n"); 113049b5e25fSSatish Balay break; 113149b5e25fSSatish Balay case 6: 11321a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 11331a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_6_NaturalOrdering; 11341a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_6_NaturalOrdering; 11354d101231SSatish Balay PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=6\n"); 113649b5e25fSSatish Balay break; 113749b5e25fSSatish Balay case 7: 11381a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 11391a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_7_NaturalOrdering; 11401a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_7_NaturalOrdering; 11414d101231SSatish Balay PetscLogInfo(inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=7\n"); 114249b5e25fSSatish Balay break; 114349b5e25fSSatish Balay default: 114449b5e25fSSatish Balay a->row = row; 11451a3463dfSHong Zhang a->icol = col; 114649b5e25fSSatish Balay ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 114749b5e25fSSatish Balay ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 114849b5e25fSSatish Balay 114949b5e25fSSatish Balay /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 115049b5e25fSSatish Balay ierr = ISInvertPermutation(col,PETSC_DECIDE, &(a->icol));CHKERRQ(ierr); 1151b0a32e0cSBarry Smith PetscLogObjectParent(inA,a->icol); 115249b5e25fSSatish Balay 115349b5e25fSSatish Balay if (!a->solve_work) { 115487828ca2SBarry Smith ierr = PetscMalloc((A->m+a->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 115587828ca2SBarry Smith PetscLogObjectMemory(inA,(A->m+a->bs)*sizeof(PetscScalar)); 115649b5e25fSSatish Balay } 115749b5e25fSSatish Balay } 115849b5e25fSSatish Balay 11591a3463dfSHong Zhang ierr = MatCholeskyFactorNumeric(inA,&outA);CHKERRQ(ierr); 116049b5e25fSSatish Balay 116149b5e25fSSatish Balay PetscFunctionReturn(0); 116249b5e25fSSatish Balay } 1163950f1e5bSHong Zhang #endif 1164950f1e5bSHong Zhang 11654a2ae208SSatish Balay #undef __FUNCT__ 11664a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_SeqSBAIJ" 116749b5e25fSSatish Balay int MatPrintHelp_SeqSBAIJ(Mat A) 116849b5e25fSSatish Balay { 116949b5e25fSSatish Balay static PetscTruth called = PETSC_FALSE; 117049b5e25fSSatish Balay MPI_Comm comm = A->comm; 117149b5e25fSSatish Balay int ierr; 117249b5e25fSSatish Balay 117349b5e25fSSatish Balay PetscFunctionBegin; 117449b5e25fSSatish Balay if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 117549b5e25fSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATSEQSBAIJ and MATMPISBAIJ matrix formats (the defaults):\n");CHKERRQ(ierr); 117649b5e25fSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_block_size <block_size>\n");CHKERRQ(ierr); 117749b5e25fSSatish Balay PetscFunctionReturn(0); 117849b5e25fSSatish Balay } 117949b5e25fSSatish Balay 118049b5e25fSSatish Balay EXTERN_C_BEGIN 11814a2ae208SSatish Balay #undef __FUNCT__ 11824a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ" 118349b5e25fSSatish Balay int MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,int *indices) 118449b5e25fSSatish Balay { 1185045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data; 118649b5e25fSSatish Balay int i,nz,n; 118749b5e25fSSatish Balay 118849b5e25fSSatish Balay PetscFunctionBegin; 1189045c9aa0SHong Zhang nz = baij->s_maxnz; 1190c464158bSHong Zhang n = mat->n; 119149b5e25fSSatish Balay for (i=0; i<nz; i++) { 119249b5e25fSSatish Balay baij->j[i] = indices[i]; 119349b5e25fSSatish Balay } 1194045c9aa0SHong Zhang baij->s_nz = nz; 119549b5e25fSSatish Balay for (i=0; i<n; i++) { 119649b5e25fSSatish Balay baij->ilen[i] = baij->imax[i]; 119749b5e25fSSatish Balay } 119849b5e25fSSatish Balay 119949b5e25fSSatish Balay PetscFunctionReturn(0); 120049b5e25fSSatish Balay } 120149b5e25fSSatish Balay EXTERN_C_END 120249b5e25fSSatish Balay 12034a2ae208SSatish Balay #undef __FUNCT__ 12044a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices" 120549b5e25fSSatish Balay /*@ 120619585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 120749b5e25fSSatish Balay in the matrix. 120849b5e25fSSatish Balay 120949b5e25fSSatish Balay Input Parameters: 121019585528SSatish Balay + mat - the SeqSBAIJ matrix 121149b5e25fSSatish Balay - indices - the column indices 121249b5e25fSSatish Balay 121349b5e25fSSatish Balay Level: advanced 121449b5e25fSSatish Balay 121549b5e25fSSatish Balay Notes: 121649b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 121749b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 121849b5e25fSSatish Balay of the MatSetValues() operation. 121949b5e25fSSatish Balay 122049b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 122119585528SSatish Balay MatCreateSeqSBAIJ(). 122249b5e25fSSatish Balay 1223ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 122449b5e25fSSatish Balay 1225ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ 122649b5e25fSSatish Balay @*/ 122749b5e25fSSatish Balay int MatSeqSBAIJSetColumnIndices(Mat mat,int *indices) 122849b5e25fSSatish Balay { 122949b5e25fSSatish Balay int ierr,(*f)(Mat,int *); 123049b5e25fSSatish Balay 123149b5e25fSSatish Balay PetscFunctionBegin; 123249b5e25fSSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 1233c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqSBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 123449b5e25fSSatish Balay if (f) { 123549b5e25fSSatish Balay ierr = (*f)(mat,indices);CHKERRQ(ierr); 123649b5e25fSSatish Balay } else { 123729bbc08cSBarry Smith SETERRQ(1,"Wrong type of matrix to set column indices"); 123849b5e25fSSatish Balay } 123949b5e25fSSatish Balay PetscFunctionReturn(0); 124049b5e25fSSatish Balay } 124149b5e25fSSatish Balay 12424a2ae208SSatish Balay #undef __FUNCT__ 12434a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqSBAIJ" 1244273d9f13SBarry Smith int MatSetUpPreallocation_SeqSBAIJ(Mat A) 1245273d9f13SBarry Smith { 1246273d9f13SBarry Smith int ierr; 1247273d9f13SBarry Smith 1248273d9f13SBarry Smith PetscFunctionBegin; 1249273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(A,1,PETSC_DEFAULT,0);CHKERRQ(ierr); 1250273d9f13SBarry Smith PetscFunctionReturn(0); 1251273d9f13SBarry Smith } 1252273d9f13SBarry Smith 1253a6ece127SHong Zhang #undef __FUNCT__ 1254a6ece127SHong Zhang #define __FUNCT__ "MatGetArray_SeqSBAIJ" 1255*4e7234bfSBarry Smith int MatGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1256a6ece127SHong Zhang { 1257a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1258a6ece127SHong Zhang PetscFunctionBegin; 1259a6ece127SHong Zhang *array = a->a; 1260a6ece127SHong Zhang PetscFunctionReturn(0); 1261a6ece127SHong Zhang } 1262a6ece127SHong Zhang 1263a6ece127SHong Zhang #undef __FUNCT__ 1264a6ece127SHong Zhang #define __FUNCT__ "MatRestoreArray_SeqSBAIJ" 1265*4e7234bfSBarry Smith int MatRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1266a6ece127SHong Zhang { 1267a6ece127SHong Zhang PetscFunctionBegin; 1268a6ece127SHong Zhang PetscFunctionReturn(0); 1269a6ece127SHong Zhang } 1270a6ece127SHong Zhang 127142ee4b1aSHong Zhang #include "petscblaslapack.h" 127242ee4b1aSHong Zhang #undef __FUNCT__ 127342ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ" 1274268466fbSBarry Smith int MatAXPY_SeqSBAIJ(const PetscScalar *a,Mat X,Mat Y,MatStructure str) 127542ee4b1aSHong Zhang { 127642ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ *)X->data, *y=(Mat_SeqSBAIJ *)Y->data; 1277c4319e64SHong Zhang int ierr,one=1,i,bs=y->bs,bs2,j; 127842ee4b1aSHong Zhang 127942ee4b1aSHong Zhang PetscFunctionBegin; 128042ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 1281268466fbSBarry Smith BLaxpy_(&x->s_nz,(PetscScalar*)a,x->a,&one,y->a,&one); 1282c537a176SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1283c4319e64SHong Zhang if (y->xtoy && y->XtoY != X) { 1284c4319e64SHong Zhang ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 1285c4319e64SHong Zhang ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 1286c537a176SHong Zhang } 1287c4319e64SHong Zhang if (!y->xtoy) { /* get xtoy */ 1288c4319e64SHong Zhang ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 1289c4319e64SHong Zhang y->XtoY = X; 1290c537a176SHong Zhang } 1291c4319e64SHong Zhang bs2 = bs*bs; 1292c537a176SHong Zhang for (i=0; i<x->s_nz; i++) { 1293c4319e64SHong Zhang j = 0; 1294c4319e64SHong Zhang while (j < bs2){ 12956550863bSHong Zhang y->a[bs2*y->xtoy[i]+j] += (*a)*(x->a[bs2*i+j]); 1296c4319e64SHong Zhang j++; 1297c537a176SHong Zhang } 1298c4319e64SHong Zhang } 1299c4319e64SHong Zhang PetscLogInfo(0,"MatAXPY_SeqSBAIJ: ratio of nnz_s(X)/nnz_s(Y): %d/%d = %g\n",bs2*x->s_nz,bs2*y->s_nz,(PetscReal)(bs2*x->s_nz)/(bs2*y->s_nz)); 130042ee4b1aSHong Zhang } else { 130142ee4b1aSHong Zhang ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr); 130242ee4b1aSHong Zhang } 130342ee4b1aSHong Zhang PetscFunctionReturn(0); 130442ee4b1aSHong Zhang } 130542ee4b1aSHong Zhang 130649b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 130749b5e25fSSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 130849b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 130949b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 131049b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 131149b5e25fSSatish Balay MatMultAdd_SeqSBAIJ_N, 131249b5e25fSSatish Balay MatMultTranspose_SeqSBAIJ, 131349b5e25fSSatish Balay MatMultTransposeAdd_SeqSBAIJ, 131449b5e25fSSatish Balay MatSolve_SeqSBAIJ_N, 131549b5e25fSSatish Balay 0, 131649b5e25fSSatish Balay 0, 131749b5e25fSSatish Balay 0, 131849b5e25fSSatish Balay 0, 13195f4ef2deSHong Zhang MatCholeskyFactor_SeqSBAIJ, 1320d06b337dSHong Zhang MatRelax_SeqSBAIJ, 132149b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 132249b5e25fSSatish Balay MatGetInfo_SeqSBAIJ, 132349b5e25fSSatish Balay MatEqual_SeqSBAIJ, 132449b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 132549b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 132649b5e25fSSatish Balay MatNorm_SeqSBAIJ, 132749b5e25fSSatish Balay 0, 132849b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 132949b5e25fSSatish Balay 0, 133049b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 133149b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 133249b5e25fSSatish Balay MatZeroRows_SeqSBAIJ, 133349b5e25fSSatish Balay 0, 133449b5e25fSSatish Balay 0, 13355f4ef2deSHong Zhang MatCholeskyFactorSymbolic_SeqSBAIJ, 13365f4ef2deSHong Zhang MatCholeskyFactorNumeric_SeqSBAIJ_N, 1337273d9f13SBarry Smith MatSetUpPreallocation_SeqSBAIJ, 1338c464158bSHong Zhang 0, 13394d101231SSatish Balay MatICCFactorSymbolic_SeqSBAIJ, 1340a6ece127SHong Zhang MatGetArray_SeqSBAIJ, 1341a6ece127SHong Zhang MatRestoreArray_SeqSBAIJ, 134249b5e25fSSatish Balay MatDuplicate_SeqSBAIJ, 134349b5e25fSSatish Balay 0, 134449b5e25fSSatish Balay 0, 134549b5e25fSSatish Balay 0, 1346950f1e5bSHong Zhang 0, 134742ee4b1aSHong Zhang MatAXPY_SeqSBAIJ, 134849b5e25fSSatish Balay MatGetSubMatrices_SeqSBAIJ, 134949b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 135049b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 135149b5e25fSSatish Balay 0, 135249b5e25fSSatish Balay MatPrintHelp_SeqSBAIJ, 135349b5e25fSSatish Balay MatScale_SeqSBAIJ, 135449b5e25fSSatish Balay 0, 135549b5e25fSSatish Balay 0, 135649b5e25fSSatish Balay 0, 135749b5e25fSSatish Balay MatGetBlockSize_SeqSBAIJ, 135849b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 135949b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 136049b5e25fSSatish Balay 0, 136149b5e25fSSatish Balay 0, 136249b5e25fSSatish Balay 0, 136349b5e25fSSatish Balay 0, 136449b5e25fSSatish Balay 0, 136549b5e25fSSatish Balay 0, 136649b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 136749b5e25fSSatish Balay MatGetSubMatrix_SeqSBAIJ, 136849b5e25fSSatish Balay 0, 136949b5e25fSSatish Balay 0, 13708a124369SBarry Smith MatGetPetscMaps_Petsc, 1371d959ec07SHong Zhang 0, 1372d959ec07SHong Zhang 0, 1373d959ec07SHong Zhang 0, 1374d959ec07SHong Zhang 0, 1375d959ec07SHong Zhang 0, 1376d959ec07SHong Zhang 0, 13773e0d88b5SBarry Smith MatGetRowMax_SeqSBAIJ, 13783e0d88b5SBarry Smith 0, 13793e0d88b5SBarry Smith 0, 13803e0d88b5SBarry Smith 0, 13813e0d88b5SBarry Smith 0, 13823e0d88b5SBarry Smith 0, 13833e0d88b5SBarry Smith 0, 13843e0d88b5SBarry Smith 0, 13853e0d88b5SBarry Smith 0, 13863e0d88b5SBarry Smith 0, 13873e0d88b5SBarry Smith 0, 13883e0d88b5SBarry Smith 0, 13893e0d88b5SBarry Smith 0, 13903e0d88b5SBarry Smith 0, 13913e0d88b5SBarry Smith #if !defined(PETSC_USE_COMPLEX) 13923e0d88b5SBarry Smith MatGetInertia_SeqSBAIJ 13933e0d88b5SBarry Smith #else 13943e0d88b5SBarry Smith 0 13953e0d88b5SBarry Smith #endif 13963e0d88b5SBarry Smith }; 139749b5e25fSSatish Balay 139849b5e25fSSatish Balay EXTERN_C_BEGIN 13994a2ae208SSatish Balay #undef __FUNCT__ 14004a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ" 140149b5e25fSSatish Balay int MatStoreValues_SeqSBAIJ(Mat mat) 140249b5e25fSSatish Balay { 14034afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data; 1404c464158bSHong Zhang int nz = aij->i[mat->m]*aij->bs*aij->bs2; 140549b5e25fSSatish Balay int ierr; 140649b5e25fSSatish Balay 140749b5e25fSSatish Balay PetscFunctionBegin; 140849b5e25fSSatish Balay if (aij->nonew != 1) { 140929bbc08cSBarry Smith SETERRQ(1,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first"); 141049b5e25fSSatish Balay } 141149b5e25fSSatish Balay 141249b5e25fSSatish Balay /* allocate space for values if not already there */ 141349b5e25fSSatish Balay if (!aij->saved_values) { 141487828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 141549b5e25fSSatish Balay } 141649b5e25fSSatish Balay 141749b5e25fSSatish Balay /* copy values over */ 141887828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 141949b5e25fSSatish Balay PetscFunctionReturn(0); 142049b5e25fSSatish Balay } 142149b5e25fSSatish Balay EXTERN_C_END 142249b5e25fSSatish Balay 142349b5e25fSSatish Balay EXTERN_C_BEGIN 14244a2ae208SSatish Balay #undef __FUNCT__ 14254a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ" 142649b5e25fSSatish Balay int MatRetrieveValues_SeqSBAIJ(Mat mat) 142749b5e25fSSatish Balay { 14284afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data; 1429c464158bSHong Zhang int nz = aij->i[mat->m]*aij->bs*aij->bs2,ierr; 143049b5e25fSSatish Balay 143149b5e25fSSatish Balay PetscFunctionBegin; 143249b5e25fSSatish Balay if (aij->nonew != 1) { 143329bbc08cSBarry Smith SETERRQ(1,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first"); 143449b5e25fSSatish Balay } 143549b5e25fSSatish Balay if (!aij->saved_values) { 143629bbc08cSBarry Smith SETERRQ(1,"Must call MatStoreValues(A);first"); 143749b5e25fSSatish Balay } 143849b5e25fSSatish Balay 143949b5e25fSSatish Balay /* copy values over */ 144087828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 144149b5e25fSSatish Balay PetscFunctionReturn(0); 144249b5e25fSSatish Balay } 144349b5e25fSSatish Balay EXTERN_C_END 144449b5e25fSSatish Balay 14458549e402SHong Zhang EXTERN_C_BEGIN 14464a2ae208SSatish Balay #undef __FUNCT__ 1447a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ" 1448a23d5eceSKris Buschelman int MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,int bs,int nz,int *nnz) 144949b5e25fSSatish Balay { 1450c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 14510c955e93SHong Zhang int i,len,ierr,mbs,bs2; 145249b5e25fSSatish Balay PetscTruth flg; 14534afc71dfSHong Zhang int s_nz; 145449b5e25fSSatish Balay 145549b5e25fSSatish Balay PetscFunctionBegin; 1456273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1457e82a3eeeSBarry Smith ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1458c464158bSHong Zhang mbs = B->m/bs; 145949b5e25fSSatish Balay bs2 = bs*bs; 146049b5e25fSSatish Balay 1461c464158bSHong Zhang if (mbs*bs != B->m) { 146229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 146349b5e25fSSatish Balay } 146449b5e25fSSatish Balay 1465435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 1466435da068SBarry Smith if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %d",nz); 146749b5e25fSSatish Balay if (nnz) { 146849b5e25fSSatish Balay for (i=0; i<mbs; i++) { 146929bbc08cSBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %d value %d",i,nnz[i]); 147080fe4e49SBarry Smith if (nnz[i] > mbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %d value %d rowlength %d",i,nnz[i],mbs); 147149b5e25fSSatish Balay } 147249b5e25fSSatish Balay } 147349b5e25fSSatish Balay 1474e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_no_unroll",&flg);CHKERRQ(ierr); 147549b5e25fSSatish Balay if (!flg) { 147649b5e25fSSatish Balay switch (bs) { 147749b5e25fSSatish Balay case 1: 14784ccecd49SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1; 147949b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_1; 1480d59c15a7SBarry Smith B->ops->solves = MatSolves_SeqSBAIJ_1; 148149b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_1; 148249b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 148349b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 148449b5e25fSSatish Balay break; 148549b5e25fSSatish Balay case 2: 14864ccecd49SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 148749b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_2; 148849b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_2; 148949b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 149049b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 149149b5e25fSSatish Balay break; 149249b5e25fSSatish Balay case 3: 14935f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 149449b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_3; 149549b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_3; 149649b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 149749b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 149849b5e25fSSatish Balay break; 149949b5e25fSSatish Balay case 4: 15005f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 150149b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_4; 150249b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_4; 150349b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 150449b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 150549b5e25fSSatish Balay break; 150649b5e25fSSatish Balay case 5: 15075f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 150849b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_5; 150949b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_5; 151049b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 151149b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 151249b5e25fSSatish Balay break; 151349b5e25fSSatish Balay case 6: 15145f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 151549b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_6; 151649b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_6; 151749b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 151849b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 151949b5e25fSSatish Balay break; 152049b5e25fSSatish Balay case 7: 1521de53e5efSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 152249b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_7; 152349b5e25fSSatish Balay B->ops->solvetranspose = MatSolveTranspose_SeqSBAIJ_7; 1524de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 152549b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 152649b5e25fSSatish Balay break; 152749b5e25fSSatish Balay } 152849b5e25fSSatish Balay } 152949b5e25fSSatish Balay 153049b5e25fSSatish Balay b->mbs = mbs; 15314afc71dfSHong Zhang b->nbs = mbs; 1532b0a32e0cSBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(int),&b->imax);CHKERRQ(ierr); 153349b5e25fSSatish Balay if (!nnz) { 1534435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 153549b5e25fSSatish Balay else if (nz <= 0) nz = 1; 153649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 15378cef66ccSHong Zhang b->imax[i] = nz; 153849b5e25fSSatish Balay } 1539153ea458SHong Zhang nz = nz*mbs; /* total nz */ 154049b5e25fSSatish Balay } else { 154149b5e25fSSatish Balay nz = 0; 15428cef66ccSHong Zhang for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 154349b5e25fSSatish Balay } 15448cef66ccSHong Zhang /* s_nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 15458cef66ccSHong Zhang s_nz = nz; 154649b5e25fSSatish Balay 154749b5e25fSSatish Balay /* allocate the matrix space */ 1548c464158bSHong Zhang len = s_nz*sizeof(int) + s_nz*bs2*sizeof(MatScalar) + (B->m+1)*sizeof(int); 154982502324SSatish Balay ierr = PetscMalloc(len,&b->a);CHKERRQ(ierr); 155049b5e25fSSatish Balay ierr = PetscMemzero(b->a,s_nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 155149b5e25fSSatish Balay b->j = (int*)(b->a + s_nz*bs2); 155249b5e25fSSatish Balay ierr = PetscMemzero(b->j,s_nz*sizeof(int));CHKERRQ(ierr); 155349b5e25fSSatish Balay b->i = b->j + s_nz; 155449b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 155549b5e25fSSatish Balay 155649b5e25fSSatish Balay /* pointer to beginning of each row */ 155749b5e25fSSatish Balay b->i[0] = 0; 155849b5e25fSSatish Balay for (i=1; i<mbs+1; i++) { 155949b5e25fSSatish Balay b->i[i] = b->i[i-1] + b->imax[i-1]; 156049b5e25fSSatish Balay } 156149b5e25fSSatish Balay 156249b5e25fSSatish Balay /* b->ilen will count nonzeros in each block row so far. */ 15635033bc48SSatish Balay ierr = PetscMalloc((mbs+1)*sizeof(int),&b->ilen);CHKERRQ(ierr); 1564b0a32e0cSBarry Smith PetscLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ)); 156549b5e25fSSatish Balay for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 156649b5e25fSSatish Balay 156749b5e25fSSatish Balay b->bs = bs; 156849b5e25fSSatish Balay b->bs2 = bs2; 156949b5e25fSSatish Balay b->s_nz = 0; 157049b5e25fSSatish Balay b->s_maxnz = s_nz*bs2; 1571153ea458SHong Zhang 157216cdd363SHong Zhang b->inew = 0; 157316cdd363SHong Zhang b->jnew = 0; 157416cdd363SHong Zhang b->anew = 0; 157516cdd363SHong Zhang b->a2anew = 0; 15761a3463dfSHong Zhang b->permute = PETSC_FALSE; 1577c464158bSHong Zhang PetscFunctionReturn(0); 1578c464158bSHong Zhang } 1579a23d5eceSKris Buschelman EXTERN_C_END 1580153ea458SHong Zhang 1581a23d5eceSKris Buschelman EXTERN_C_BEGIN 1582a23d5eceSKris Buschelman #undef __FUNCT__ 1583a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ" 1584a23d5eceSKris Buschelman int MatCreate_SeqSBAIJ(Mat B) 1585a23d5eceSKris Buschelman { 1586a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 1587a23d5eceSKris Buschelman int ierr,size; 1588a23d5eceSKris Buschelman 1589a23d5eceSKris Buschelman PetscFunctionBegin; 1590a23d5eceSKris Buschelman ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr); 1591a23d5eceSKris Buschelman if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1592a23d5eceSKris Buschelman B->m = B->M = PetscMax(B->m,B->M); 1593a23d5eceSKris Buschelman B->n = B->N = PetscMax(B->n,B->N); 1594a23d5eceSKris Buschelman 1595a23d5eceSKris Buschelman ierr = PetscNew(Mat_SeqSBAIJ,&b);CHKERRQ(ierr); 1596a23d5eceSKris Buschelman B->data = (void*)b; 1597a23d5eceSKris Buschelman ierr = PetscMemzero(b,sizeof(Mat_SeqSBAIJ));CHKERRQ(ierr); 1598a23d5eceSKris Buschelman ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1599a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1600a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1601a23d5eceSKris Buschelman B->factor = 0; 1602a23d5eceSKris Buschelman B->lupivotthreshold = 1.0; 1603a23d5eceSKris Buschelman B->mapping = 0; 1604a23d5eceSKris Buschelman b->row = 0; 1605a23d5eceSKris Buschelman b->icol = 0; 1606a23d5eceSKris Buschelman b->reallocs = 0; 1607a23d5eceSKris Buschelman b->saved_values = 0; 1608a23d5eceSKris Buschelman 1609a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1610a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 1611a23d5eceSKris Buschelman 1612a23d5eceSKris Buschelman b->sorted = PETSC_FALSE; 1613a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1614a23d5eceSKris Buschelman b->nonew = 0; 1615a23d5eceSKris Buschelman b->diag = 0; 1616a23d5eceSKris Buschelman b->solve_work = 0; 1617a23d5eceSKris Buschelman b->mult_work = 0; 1618a23d5eceSKris Buschelman B->spptr = 0; 1619a23d5eceSKris Buschelman b->keepzeroedrows = PETSC_FALSE; 1620a23d5eceSKris Buschelman b->xtoy = 0; 1621a23d5eceSKris Buschelman b->XtoY = 0; 1622a23d5eceSKris Buschelman 1623a23d5eceSKris Buschelman b->inew = 0; 1624a23d5eceSKris Buschelman b->jnew = 0; 1625a23d5eceSKris Buschelman b->anew = 0; 1626a23d5eceSKris Buschelman b->a2anew = 0; 1627a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1628a23d5eceSKris Buschelman 1629a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1630a23d5eceSKris Buschelman "MatStoreValues_SeqSBAIJ", 1631a23d5eceSKris Buschelman MatStoreValues_SeqSBAIJ);CHKERRQ(ierr); 1632a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1633a23d5eceSKris Buschelman "MatRetrieveValues_SeqSBAIJ", 1634a23d5eceSKris Buschelman (void*)MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr); 1635a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C", 1636a23d5eceSKris Buschelman "MatSeqSBAIJSetColumnIndices_SeqSBAIJ", 1637a23d5eceSKris Buschelman MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr); 1638a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetPreallocation_C", 1639a23d5eceSKris Buschelman "MatSeqSBAIJSetPreallocation_SeqSBAIJ", 1640a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr); 1641a23d5eceSKris Buschelman PetscFunctionReturn(0); 1642a23d5eceSKris Buschelman } 1643a23d5eceSKris Buschelman EXTERN_C_END 1644a23d5eceSKris Buschelman 1645a23d5eceSKris Buschelman #undef __FUNCT__ 1646a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation" 1647a23d5eceSKris Buschelman /*@C 1648a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 1649a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 1650a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 1651a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 1652a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 1653a23d5eceSKris Buschelman 1654a23d5eceSKris Buschelman Collective on Mat 1655a23d5eceSKris Buschelman 1656a23d5eceSKris Buschelman Input Parameters: 1657a23d5eceSKris Buschelman + A - the symmetric matrix 1658a23d5eceSKris Buschelman . bs - size of block 1659a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 1660a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 1661a23d5eceSKris Buschelman diagonal portion of each block (possibly different for each block row) or PETSC_NULL 1662a23d5eceSKris Buschelman 1663a23d5eceSKris Buschelman Options Database Keys: 1664a23d5eceSKris Buschelman . -mat_no_unroll - uses code that does not unroll the loops in the 1665a23d5eceSKris Buschelman block calculations (much slower) 1666a23d5eceSKris Buschelman . -mat_block_size - size of the blocks to use 1667a23d5eceSKris Buschelman 1668a23d5eceSKris Buschelman Level: intermediate 1669a23d5eceSKris Buschelman 1670a23d5eceSKris Buschelman Notes: 1671a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 1672a23d5eceSKris Buschelman Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 1673a23d5eceSKris Buschelman allocation. For additional details, see the users manual chapter on 1674a23d5eceSKris Buschelman matrices. 1675a23d5eceSKris Buschelman 1676a23d5eceSKris Buschelman .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ() 1677a23d5eceSKris Buschelman @*/ 1678ca01db9bSBarry Smith int MatSeqSBAIJSetPreallocation(Mat B,int bs,int nz,const int nnz[]) { 1679ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[]); 1680a23d5eceSKris Buschelman 1681a23d5eceSKris Buschelman PetscFunctionBegin; 1682a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1683a23d5eceSKris Buschelman if (f) { 1684a23d5eceSKris Buschelman ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 1685a23d5eceSKris Buschelman } 1686a23d5eceSKris Buschelman PetscFunctionReturn(0); 1687a23d5eceSKris Buschelman } 168849b5e25fSSatish Balay 16894a2ae208SSatish Balay #undef __FUNCT__ 16904a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ" 1691c464158bSHong Zhang /*@C 1692c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 1693c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 1694c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 1695c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 1696c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 169749b5e25fSSatish Balay 1698c464158bSHong Zhang Collective on MPI_Comm 1699c464158bSHong Zhang 1700c464158bSHong Zhang Input Parameters: 1701c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 1702c464158bSHong Zhang . bs - size of block 1703c464158bSHong Zhang . m - number of rows, or number of columns 1704c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 1705744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 1706744e8345SSatish Balay diagonal portion of each block (possibly different for each block row) or PETSC_NULL 1707c464158bSHong Zhang 1708c464158bSHong Zhang Output Parameter: 1709c464158bSHong Zhang . A - the symmetric matrix 1710c464158bSHong Zhang 1711c464158bSHong Zhang Options Database Keys: 1712c464158bSHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1713c464158bSHong Zhang block calculations (much slower) 1714c464158bSHong Zhang . -mat_block_size - size of the blocks to use 1715c464158bSHong Zhang 1716c464158bSHong Zhang Level: intermediate 1717c464158bSHong Zhang 1718c464158bSHong Zhang Notes: 1719c464158bSHong Zhang 1720c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 1721c464158bSHong Zhang Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 1722c464158bSHong Zhang allocation. For additional details, see the users manual chapter on 1723c464158bSHong Zhang matrices. 1724c464158bSHong Zhang 1725c464158bSHong Zhang .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ() 1726c464158bSHong Zhang @*/ 1727ca01db9bSBarry Smith int MatCreateSeqSBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,const int nnz[],Mat *A) 1728c464158bSHong Zhang { 1729c464158bSHong Zhang int ierr; 1730c464158bSHong Zhang 1731c464158bSHong Zhang PetscFunctionBegin; 1732c464158bSHong Zhang ierr = MatCreate(comm,m,n,m,n,A);CHKERRQ(ierr); 1733c464158bSHong Zhang ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1734273d9f13SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*A,bs,nz,nnz);CHKERRQ(ierr); 173549b5e25fSSatish Balay PetscFunctionReturn(0); 173649b5e25fSSatish Balay } 173749b5e25fSSatish Balay 17384a2ae208SSatish Balay #undef __FUNCT__ 17394a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ" 174049b5e25fSSatish Balay int MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 174149b5e25fSSatish Balay { 174249b5e25fSSatish Balay Mat C; 174349b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 174449b5e25fSSatish Balay int i,len,mbs = a->mbs,nz = a->s_nz,bs2 =a->bs2,ierr; 174549b5e25fSSatish Balay 174649b5e25fSSatish Balay PetscFunctionBegin; 174729bbc08cSBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 174849b5e25fSSatish Balay 174949b5e25fSSatish Balay *B = 0; 1750692f9cbeSHong Zhang ierr = MatCreate(A->comm,A->m,A->n,A->m,A->n,&C);CHKERRQ(ierr); 1751692f9cbeSHong Zhang ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr); 1752692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 1753692f9cbeSHong Zhang 175449b5e25fSSatish Balay ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1755273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 175649b5e25fSSatish Balay C->factor = A->factor; 175749b5e25fSSatish Balay c->row = 0; 175849b5e25fSSatish Balay c->icol = 0; 175949b5e25fSSatish Balay c->saved_values = 0; 176049b5e25fSSatish Balay c->keepzeroedrows = a->keepzeroedrows; 176149b5e25fSSatish Balay C->assembled = PETSC_TRUE; 176249b5e25fSSatish Balay 176349b5e25fSSatish Balay c->bs = a->bs; 176449b5e25fSSatish Balay c->bs2 = a->bs2; 176549b5e25fSSatish Balay c->mbs = a->mbs; 176649b5e25fSSatish Balay c->nbs = a->nbs; 176749b5e25fSSatish Balay 1768b0a32e0cSBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(int),&c->imax);CHKERRQ(ierr); 1769b0a32e0cSBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(int),&c->ilen);CHKERRQ(ierr); 177049b5e25fSSatish Balay for (i=0; i<mbs; i++) { 177149b5e25fSSatish Balay c->imax[i] = a->imax[i]; 177249b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 177349b5e25fSSatish Balay } 177449b5e25fSSatish Balay 177549b5e25fSSatish Balay /* allocate the matrix space */ 177649b5e25fSSatish Balay c->singlemalloc = PETSC_TRUE; 177749b5e25fSSatish Balay len = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(MatScalar) + sizeof(int)); 177882502324SSatish Balay ierr = PetscMalloc(len,&c->a);CHKERRQ(ierr); 177949b5e25fSSatish Balay c->j = (int*)(c->a + nz*bs2); 178049b5e25fSSatish Balay c->i = c->j + nz; 178149b5e25fSSatish Balay ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int));CHKERRQ(ierr); 178249b5e25fSSatish Balay if (mbs > 0) { 178349b5e25fSSatish Balay ierr = PetscMemcpy(c->j,a->j,nz*sizeof(int));CHKERRQ(ierr); 178449b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 178549b5e25fSSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 178649b5e25fSSatish Balay } else { 178749b5e25fSSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 178849b5e25fSSatish Balay } 178949b5e25fSSatish Balay } 179049b5e25fSSatish Balay 1791b0a32e0cSBarry Smith PetscLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ)); 179249b5e25fSSatish Balay c->sorted = a->sorted; 179349b5e25fSSatish Balay c->roworiented = a->roworiented; 179449b5e25fSSatish Balay c->nonew = a->nonew; 179549b5e25fSSatish Balay 179649b5e25fSSatish Balay if (a->diag) { 1797b0a32e0cSBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(int),&c->diag);CHKERRQ(ierr); 1798b0a32e0cSBarry Smith PetscLogObjectMemory(C,(mbs+1)*sizeof(int)); 179949b5e25fSSatish Balay for (i=0; i<mbs; i++) { 180049b5e25fSSatish Balay c->diag[i] = a->diag[i]; 180149b5e25fSSatish Balay } 180249b5e25fSSatish Balay } else c->diag = 0; 180349b5e25fSSatish Balay c->s_nz = a->s_nz; 180449b5e25fSSatish Balay c->s_maxnz = a->s_maxnz; 180549b5e25fSSatish Balay c->solve_work = 0; 18062a1b7f2aSHong Zhang C->spptr = 0; /* Dangerous -I'm throwing away a->spptr */ 180749b5e25fSSatish Balay c->mult_work = 0; 180849b5e25fSSatish Balay *B = C; 1809b0a32e0cSBarry Smith ierr = PetscFListDuplicate(A->qlist,&C->qlist);CHKERRQ(ierr); 181049b5e25fSSatish Balay PetscFunctionReturn(0); 181149b5e25fSSatish Balay } 181249b5e25fSSatish Balay 18138549e402SHong Zhang EXTERN_C_BEGIN 18144a2ae208SSatish Balay #undef __FUNCT__ 18154a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqSBAIJ" 1816b0a32e0cSBarry Smith int MatLoad_SeqSBAIJ(PetscViewer viewer,MatType type,Mat *A) 181749b5e25fSSatish Balay { 181849b5e25fSSatish Balay Mat_SeqSBAIJ *a; 181949b5e25fSSatish Balay Mat B; 182049b5e25fSSatish Balay int i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1; 18213f7326a9SHong Zhang int *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount; 182249b5e25fSSatish Balay int kmax,jcount,block,idx,point,nzcountb,extra_rows; 182349b5e25fSSatish Balay int *masked,nmask,tmp,bs2,ishift; 182487828ca2SBarry Smith PetscScalar *aa; 182549b5e25fSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 182627f1aa60SHong Zhang #if defined(PETSC_HAVE_SPOOLES) || defined(PETSC_HAVE_MUMPS) 1827ecc4ab6dSBarry Smith PetscTruth flag; 1828ecc4ab6dSBarry Smith #endif 182949b5e25fSSatish Balay 183049b5e25fSSatish Balay PetscFunctionBegin; 1831b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 183249b5e25fSSatish Balay bs2 = bs*bs; 183349b5e25fSSatish Balay 183449b5e25fSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 183529bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 1836b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 183749b5e25fSSatish Balay ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 1838552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 183949b5e25fSSatish Balay M = header[1]; N = header[2]; nz = header[3]; 184049b5e25fSSatish Balay 184149b5e25fSSatish Balay if (header[3] < 0) { 184229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ"); 184349b5e25fSSatish Balay } 184449b5e25fSSatish Balay 184529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 184649b5e25fSSatish Balay 184749b5e25fSSatish Balay /* 184849b5e25fSSatish Balay This code adds extra rows to make sure the number of rows is 184949b5e25fSSatish Balay divisible by the blocksize 185049b5e25fSSatish Balay */ 185149b5e25fSSatish Balay mbs = M/bs; 185249b5e25fSSatish Balay extra_rows = bs - M + bs*(mbs); 185349b5e25fSSatish Balay if (extra_rows == bs) extra_rows = 0; 185449b5e25fSSatish Balay else mbs++; 185549b5e25fSSatish Balay if (extra_rows) { 1856b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_SeqSBAIJ:Padding loaded matrix to match blocksize\n"); 185749b5e25fSSatish Balay } 185849b5e25fSSatish Balay 185949b5e25fSSatish Balay /* read in row lengths */ 1860b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 186149b5e25fSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 186249b5e25fSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 186349b5e25fSSatish Balay 186449b5e25fSSatish Balay /* read in column indices */ 1865b0a32e0cSBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(int),&jj);CHKERRQ(ierr); 186649b5e25fSSatish Balay ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 186749b5e25fSSatish Balay for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 186849b5e25fSSatish Balay 186949b5e25fSSatish Balay /* loop over row lengths determining block row lengths */ 187082502324SSatish Balay ierr = PetscMalloc(mbs*sizeof(int),&s_browlengths);CHKERRQ(ierr); 1871a91a614fSBarry Smith ierr = PetscMemzero(s_browlengths,mbs*sizeof(int));CHKERRQ(ierr); 187282502324SSatish Balay ierr = PetscMalloc(2*mbs*sizeof(int),&mask);CHKERRQ(ierr); 187349b5e25fSSatish Balay ierr = PetscMemzero(mask,mbs*sizeof(int));CHKERRQ(ierr); 187449b5e25fSSatish Balay masked = mask + mbs; 187549b5e25fSSatish Balay rowcount = 0; nzcount = 0; 187649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 187749b5e25fSSatish Balay nmask = 0; 187849b5e25fSSatish Balay for (j=0; j<bs; j++) { 187949b5e25fSSatish Balay kmax = rowlengths[rowcount]; 188049b5e25fSSatish Balay for (k=0; k<kmax; k++) { 18812d703238SHong Zhang tmp = jj[nzcount++]/bs; /* block col. index */ 188203630b6eSHong Zhang if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;} 188349b5e25fSSatish Balay } 188449b5e25fSSatish Balay rowcount++; 188549b5e25fSSatish Balay } 1886574b2666SHong Zhang s_browlengths[i] += nmask; 1887574b2666SHong Zhang 188849b5e25fSSatish Balay /* zero out the mask elements we set */ 188949b5e25fSSatish Balay for (j=0; j<nmask; j++) mask[masked[j]] = 0; 189049b5e25fSSatish Balay } 189149b5e25fSSatish Balay 189249b5e25fSSatish Balay /* create our matrix */ 18937fe2be48SHong Zhang ierr = MatCreateSeqSBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,s_browlengths,A);CHKERRQ(ierr); 189449b5e25fSSatish Balay B = *A; 189549b5e25fSSatish Balay a = (Mat_SeqSBAIJ*)B->data; 189649b5e25fSSatish Balay 189749b5e25fSSatish Balay /* set matrix "i" values */ 189849b5e25fSSatish Balay a->i[0] = 0; 189949b5e25fSSatish Balay for (i=1; i<= mbs; i++) { 1900574b2666SHong Zhang a->i[i] = a->i[i-1] + s_browlengths[i-1]; 1901574b2666SHong Zhang a->ilen[i-1] = s_browlengths[i-1]; 190249b5e25fSSatish Balay } 19037fe2be48SHong Zhang a->s_nz = a->i[mbs]; 190449b5e25fSSatish Balay 190549b5e25fSSatish Balay /* read in nonzero values */ 190687828ca2SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 190749b5e25fSSatish Balay ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 190849b5e25fSSatish Balay for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 190949b5e25fSSatish Balay 191049b5e25fSSatish Balay /* set "a" and "j" values into matrix */ 191149b5e25fSSatish Balay nzcount = 0; jcount = 0; 191249b5e25fSSatish Balay for (i=0; i<mbs; i++) { 191349b5e25fSSatish Balay nzcountb = nzcount; 191449b5e25fSSatish Balay nmask = 0; 191549b5e25fSSatish Balay for (j=0; j<bs; j++) { 191649b5e25fSSatish Balay kmax = rowlengths[i*bs+j]; 191749b5e25fSSatish Balay for (k=0; k<kmax; k++) { 19182d703238SHong Zhang tmp = jj[nzcount++]/bs; /* block col. index */ 191903630b6eSHong Zhang if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;} 19202d703238SHong Zhang } 19212d703238SHong Zhang } 19222d703238SHong Zhang /* sort the masked values */ 19232d703238SHong Zhang ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 19242d703238SHong Zhang 19252d703238SHong Zhang /* set "j" values into matrix */ 19262d703238SHong Zhang maskcount = 1; 19272d703238SHong Zhang for (j=0; j<nmask; j++) { 192849b5e25fSSatish Balay a->j[jcount++] = masked[j]; 192949b5e25fSSatish Balay mask[masked[j]] = maskcount++; 193049b5e25fSSatish Balay } 1931574b2666SHong Zhang 193249b5e25fSSatish Balay /* set "a" values into matrix */ 193349b5e25fSSatish Balay ishift = bs2*a->i[i]; 193449b5e25fSSatish Balay for (j=0; j<bs; j++) { 193549b5e25fSSatish Balay kmax = rowlengths[i*bs+j]; 193649b5e25fSSatish Balay for (k=0; k<kmax; k++) { 1937574b2666SHong Zhang tmp = jj[nzcountb]/bs ; /* block col. index */ 1938574b2666SHong Zhang if (tmp >= i){ 193949b5e25fSSatish Balay block = mask[tmp] - 1; 194049b5e25fSSatish Balay point = jj[nzcountb] - bs*tmp; 194149b5e25fSSatish Balay idx = ishift + bs2*block + j + bs*point; 1942574b2666SHong Zhang a->a[idx] = aa[nzcountb]; 1943574b2666SHong Zhang } 1944574b2666SHong Zhang nzcountb++; 194549b5e25fSSatish Balay } 194649b5e25fSSatish Balay } 194749b5e25fSSatish Balay /* zero out the mask elements we set */ 194849b5e25fSSatish Balay for (j=0; j<nmask; j++) mask[masked[j]] = 0; 194949b5e25fSSatish Balay } 195029bbc08cSBarry Smith if (jcount != a->s_nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 195149b5e25fSSatish Balay 195249b5e25fSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 1953574b2666SHong Zhang ierr = PetscFree(s_browlengths);CHKERRQ(ierr); 195449b5e25fSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 195549b5e25fSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 195649b5e25fSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 195749b5e25fSSatish Balay 195849b5e25fSSatish Balay B->assembled = PETSC_TRUE; 195927fa2452SHong Zhang #if defined(PETSC_HAVE_SPOOLES) 196027fa2452SHong Zhang ierr = PetscOptionsHasName(B->prefix,"-mat_sbaij_spooles",&flag);CHKERRQ(ierr); 196127fa2452SHong Zhang if (flag) { ierr = MatUseSpooles_SeqSBAIJ(B);CHKERRQ(ierr); } 1962ecc4ab6dSBarry Smith #endif 196327f1aa60SHong Zhang #if defined(PETSC_HAVE_MUMPS) 196427f1aa60SHong Zhang ierr = PetscOptionsHasName(B->prefix,"-mat_sbaij_mumps",&flag);CHKERRQ(ierr); 196527f1aa60SHong Zhang if (flag) { ierr = MatUseMUMPS_MPIAIJ(B);CHKERRQ(ierr); } 196627f1aa60SHong Zhang #endif 196749b5e25fSSatish Balay ierr = MatView_Private(B);CHKERRQ(ierr); 196849b5e25fSSatish Balay PetscFunctionReturn(0); 196949b5e25fSSatish Balay } 19708549e402SHong Zhang EXTERN_C_END 1971574b2666SHong Zhang 1972d06b337dSHong Zhang #undef __FUNCT__ 1973d06b337dSHong Zhang #define __FUNCT__ "MatRelax_SeqSBAIJ" 1974c14dc6b6SHong Zhang int MatRelax_SeqSBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 1975d06b337dSHong Zhang { 1976d06b337dSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1977d06b337dSHong Zhang MatScalar *aa=a->a,*v,*v1; 1978d06b337dSHong Zhang PetscScalar *x,*b,*t,sum,d; 1979d06b337dSHong Zhang int m=a->mbs,bs=a->bs,*ai=a->i,*aj=a->j,ierr; 1980d06b337dSHong Zhang int nz,nz1,*vj,*vj1,i; 1981d06b337dSHong Zhang 1982d06b337dSHong Zhang PetscFunctionBegin; 1983b965ef7fSBarry Smith its = its*lits; 198491723122SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 1985d06b337dSHong Zhang 1986d06b337dSHong Zhang if (bs > 1) 1987d06b337dSHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 1988d06b337dSHong Zhang 1989d06b337dSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1990d06b337dSHong Zhang if (xx != bb) { 1991d06b337dSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 1992d06b337dSHong Zhang } else { 1993d06b337dSHong Zhang b = x; 1994d06b337dSHong Zhang } 1995d06b337dSHong Zhang 1996d06b337dSHong Zhang ierr = PetscMalloc(m*sizeof(PetscScalar),&t);CHKERRQ(ierr); 1997d06b337dSHong Zhang 1998d06b337dSHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 19992798e883SHong Zhang if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 2000d06b337dSHong Zhang for (i=0; i<m; i++) 2001d06b337dSHong Zhang t[i] = b[i]; 2002d06b337dSHong Zhang 2003d06b337dSHong Zhang for (i=0; i<m; i++){ 200444706875SHong Zhang d = *(aa + ai[i]); /* diag[i] */ 2005d06b337dSHong Zhang v = aa + ai[i] + 1; 2006d06b337dSHong Zhang vj = aj + ai[i] + 1; 2007d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2008d06b337dSHong Zhang x[i] = omega*t[i]/d; 2009d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); /* update rhs */ 201044706875SHong Zhang PetscLogFlops(2*nz-1); 2011d06b337dSHong Zhang } 2012d06b337dSHong Zhang } 2013d06b337dSHong Zhang 20142798e883SHong Zhang if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 2015d06b337dSHong Zhang for (i=0; i<m; i++) 2016d06b337dSHong Zhang t[i] = b[i]; 2017d06b337dSHong Zhang 2018d06b337dSHong Zhang for (i=0; i<m-1; i++){ /* update rhs */ 2019d06b337dSHong Zhang v = aa + ai[i] + 1; 2020d06b337dSHong Zhang vj = aj + ai[i] + 1; 2021d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2022d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); 202344706875SHong Zhang PetscLogFlops(2*nz-1); 2024d06b337dSHong Zhang } 2025d06b337dSHong Zhang for (i=m-1; i>=0; i--){ 2026d06b337dSHong Zhang d = *(aa + ai[i]); 2027d06b337dSHong Zhang v = aa + ai[i] + 1; 2028d06b337dSHong Zhang vj = aj + ai[i] + 1; 2029d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2030d06b337dSHong Zhang sum = t[i]; 2031d06b337dSHong Zhang while (nz--) sum -= x[*vj++]*(*v++); 203244706875SHong Zhang PetscLogFlops(2*nz-1); 2033d06b337dSHong Zhang x[i] = (1-omega)*x[i] + omega*sum/d; 2034d06b337dSHong Zhang } 2035d06b337dSHong Zhang } 2036d06b337dSHong Zhang its--; 2037d06b337dSHong Zhang } 2038d06b337dSHong Zhang 2039d06b337dSHong Zhang while (its--) { 204044706875SHong Zhang /* 204144706875SHong Zhang forward sweep: 204244706875SHong Zhang for i=0,...,m-1: 204344706875SHong Zhang sum[i] = (b[i] - U(i,:)x )/d[i]; 204444706875SHong Zhang x[i] = (1-omega)x[i] + omega*sum[i]; 204544706875SHong Zhang b = b - x[i]*U^T(i,:); 2046d06b337dSHong Zhang 204744706875SHong Zhang */ 20482798e883SHong Zhang if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 2049d06b337dSHong Zhang for (i=0; i<m; i++) 2050d06b337dSHong Zhang t[i] = b[i]; 2051d06b337dSHong Zhang 2052d06b337dSHong Zhang for (i=0; i<m; i++){ 205344706875SHong Zhang d = *(aa + ai[i]); /* diag[i] */ 2054d06b337dSHong Zhang v = aa + ai[i] + 1; v1=v; 2055d06b337dSHong Zhang vj = aj + ai[i] + 1; vj1=vj; 2056d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; nz1=nz; 2057d06b337dSHong Zhang sum = t[i]; 2058d06b337dSHong Zhang while (nz1--) sum -= (*v1++)*x[*vj1++]; 2059d06b337dSHong Zhang x[i] = (1-omega)*x[i] + omega*sum/d; 2060d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); 206144706875SHong Zhang PetscLogFlops(4*nz-2); 2062d06b337dSHong Zhang } 2063d06b337dSHong Zhang } 2064d06b337dSHong Zhang 20652798e883SHong Zhang if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 206644706875SHong Zhang /* 206744706875SHong Zhang backward sweep: 206844706875SHong Zhang b = b - x[i]*U^T(i,:), i=0,...,n-2 206944706875SHong Zhang for i=m-1,...,0: 207044706875SHong Zhang sum[i] = (b[i] - U(i,:)x )/d[i]; 207144706875SHong Zhang x[i] = (1-omega)x[i] + omega*sum[i]; 207244706875SHong Zhang */ 2073d06b337dSHong Zhang for (i=0; i<m; i++) 2074d06b337dSHong Zhang t[i] = b[i]; 2075d06b337dSHong Zhang 2076d06b337dSHong Zhang for (i=0; i<m-1; i++){ /* update rhs */ 2077d06b337dSHong Zhang v = aa + ai[i] + 1; 2078d06b337dSHong Zhang vj = aj + ai[i] + 1; 2079d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2080d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); 208144706875SHong Zhang PetscLogFlops(2*nz-1); 2082d06b337dSHong Zhang } 2083d06b337dSHong Zhang for (i=m-1; i>=0; i--){ 2084d06b337dSHong Zhang d = *(aa + ai[i]); 2085d06b337dSHong Zhang v = aa + ai[i] + 1; 2086d06b337dSHong Zhang vj = aj + ai[i] + 1; 2087d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2088d06b337dSHong Zhang sum = t[i]; 2089d06b337dSHong Zhang while (nz--) sum -= x[*vj++]*(*v++); 209044706875SHong Zhang PetscLogFlops(2*nz-1); 2091d06b337dSHong Zhang x[i] = (1-omega)*x[i] + omega*sum/d; 2092d06b337dSHong Zhang } 2093d06b337dSHong Zhang } 2094d06b337dSHong Zhang } 2095d06b337dSHong Zhang 2096d06b337dSHong Zhang ierr = PetscFree(t); CHKERRQ(ierr); 2097d06b337dSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2098d06b337dSHong Zhang if (bb != xx) { 2099d06b337dSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2100d06b337dSHong Zhang } 21012798e883SHong Zhang 2102d06b337dSHong Zhang PetscFunctionReturn(0); 2103d06b337dSHong Zhang } 2104d06b337dSHong Zhang 2105d06b337dSHong Zhang 2106d06b337dSHong Zhang 2107d06b337dSHong Zhang 210849b5e25fSSatish Balay 210949b5e25fSSatish Balay 2110