149b5e25fSSatish Balay 249b5e25fSSatish Balay /* 3a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 449b5e25fSSatish Balay matrix storage format. 549b5e25fSSatish Balay */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 8c6db04a5SJed Brown #include <petscblaslapack.h> 949b5e25fSSatish Balay 10c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1170dcbbb9SBarry Smith #define USESHORT 12c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1370dcbbb9SBarry Smith 14ace3abfcSBarry Smith extern PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat,PetscBool); 15*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16*6214f412SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat,MatType,MatReuse,Mat*); 17*6214f412SHong Zhang #endif 18b5b17502SBarry Smith 1949b5e25fSSatish Balay /* 2049b5e25fSSatish Balay Checks for missing diagonals 2149b5e25fSSatish Balay */ 224a2ae208SSatish Balay #undef __FUNCT__ 234a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ" 24ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool *missing,PetscInt *dd) 2549b5e25fSSatish Balay { 26045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 276849ba73SBarry Smith PetscErrorCode ierr; 287734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 2949b5e25fSSatish Balay 3049b5e25fSSatish Balay PetscFunctionBegin; 31045c9aa0SHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr); 322af78befSBarry Smith *missing = PETSC_FALSE; 337734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 34358d2f5dSShri Abhyankar *missing = PETSC_TRUE; 35358d2f5dSShri Abhyankar if (dd) *dd = 0; 36955c1f14SBarry Smith ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr); 37358d2f5dSShri Abhyankar } else { 38358d2f5dSShri Abhyankar diag = a->diag; 3949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 407734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 412af78befSBarry Smith *missing = PETSC_TRUE; 422af78befSBarry Smith if (dd) *dd = i; 432af78befSBarry Smith break; 442af78befSBarry Smith } 4549b5e25fSSatish Balay } 46358d2f5dSShri Abhyankar } 4749b5e25fSSatish Balay PetscFunctionReturn(0); 4849b5e25fSSatish Balay } 4949b5e25fSSatish Balay 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ" 52dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A) 5349b5e25fSSatish Balay { 54045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 556849ba73SBarry Smith PetscErrorCode ierr; 5648dd3d27SHong Zhang PetscInt i,j; 5749b5e25fSSatish Balay 5849b5e25fSSatish Balay PetscFunctionBegin; 5909f38230SBarry Smith if (!a->diag) { 60785e854fSJed Brown ierr = PetscMalloc1(a->mbs,&a->diag);CHKERRQ(ierr); 613bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt));CHKERRQ(ierr); 62c760cd28SBarry Smith a->free_diag = PETSC_TRUE; 6309f38230SBarry Smith } 6448dd3d27SHong Zhang for (i=0; i<a->mbs; i++) { 6548dd3d27SHong Zhang a->diag[i] = a->i[i+1]; 6648dd3d27SHong Zhang for (j=a->i[i]; j<a->i[i+1]; j++) { 6748dd3d27SHong Zhang if (a->j[j] == i) { 6848dd3d27SHong Zhang a->diag[i] = j; 6948dd3d27SHong Zhang break; 7048dd3d27SHong Zhang } 7148dd3d27SHong Zhang } 7248dd3d27SHong Zhang } 7349b5e25fSSatish Balay PetscFunctionReturn(0); 7449b5e25fSSatish Balay } 7549b5e25fSSatish Balay 764a2ae208SSatish Balay #undef __FUNCT__ 774a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ" 781a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 7949b5e25fSSatish Balay { 80a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 81d0f46423SBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs; 821a83f524SJed Brown PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 838f7157efSSatish Balay PetscErrorCode ierr; 8449b5e25fSSatish Balay 8549b5e25fSSatish Balay PetscFunctionBegin; 86d3e5a4abSHong Zhang *nn = n; 87a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 888f7157efSSatish Balay if (!blockcompressed) { 898f7157efSSatish Balay /* malloc & create the natural set of indices */ 90dcca6d9dSJed Brown ierr = PetscMalloc2((n+1)*bs,ia,nz*bs,ja);CHKERRQ(ierr); 918f7157efSSatish Balay for (i=0; i<n+1; i++) { 928f7157efSSatish Balay for (j=0; j<bs; j++) { 938f7157efSSatish Balay *ia[i*bs+j] = a->i[i]*bs+j+oshift; 948f7157efSSatish Balay } 958f7157efSSatish Balay } 968f7157efSSatish Balay for (i=0; i<nz; i++) { 978f7157efSSatish Balay for (j=0; j<bs; j++) { 988f7157efSSatish Balay *ja[i*bs+j] = a->j[i]*bs+j+oshift; 998f7157efSSatish Balay } 1008f7157efSSatish Balay } 1018f7157efSSatish Balay } else { /* blockcompressed */ 102a6ece127SHong Zhang if (oshift == 1) { 103a6ece127SHong Zhang /* temporarily add 1 to i and j indices */ 1046c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]++; 105a1373b80SHong Zhang for (i=0; i<n+1; i++) a->i[i]++; 1068f7157efSSatish Balay } 107a1373b80SHong Zhang *ia = a->i; *ja = a->j; 108a6ece127SHong Zhang } 10949b5e25fSSatish Balay PetscFunctionReturn(0); 11049b5e25fSSatish Balay } 11149b5e25fSSatish Balay 1124a2ae208SSatish Balay #undef __FUNCT__ 1134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ" 1141a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 11549b5e25fSSatish Balay { 116b7aaefc3SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1178f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 1188f7157efSSatish Balay PetscErrorCode ierr; 119a6ece127SHong Zhang 12049b5e25fSSatish Balay PetscFunctionBegin; 12149b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 122a6ece127SHong Zhang 1238f7157efSSatish Balay if (!blockcompressed) { 1248f7157efSSatish Balay ierr = PetscFree2(*ia,*ja);CHKERRQ(ierr); 1258f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 1266c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]--; 127a6ece127SHong Zhang for (i=0; i<n+1; i++) a->i[i]--; 128a6ece127SHong Zhang } 129a6ece127SHong Zhang PetscFunctionReturn(0); 13049b5e25fSSatish Balay } 13149b5e25fSSatish Balay 1324a2ae208SSatish Balay #undef __FUNCT__ 1334a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ" 134dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A) 13549b5e25fSSatish Balay { 13649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 137dfbe8321SBarry Smith PetscErrorCode ierr; 13849b5e25fSSatish Balay 13949b5e25fSSatish Balay PetscFunctionBegin; 140a9f03627SSatish Balay #if defined(PETSC_USE_LOG) 141d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap->N,a->nz); 142a9f03627SSatish Balay #endif 143e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1447f53bb6cSHong Zhang if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 1456bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1466bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1476bf464f9SBarry Smith ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 148c31cb41cSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 149c31cb41cSBarry Smith ierr = PetscFree(a->inode.size);CHKERRQ(ierr); 150c760cd28SBarry Smith if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 15105b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 15241f059aeSBarry Smith ierr = PetscFree(a->sor_work);CHKERRQ(ierr); 15305b42c5fSBarry Smith ierr = PetscFree(a->solves_work);CHKERRQ(ierr); 15405b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 15505b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 1564da8f245SBarry Smith if (a->free_jshort) {ierr = PetscFree(a->jshort);CHKERRQ(ierr);} 1571a3463dfSHong Zhang ierr = PetscFree(a->inew);CHKERRQ(ierr); 1586bf464f9SBarry Smith ierr = MatDestroy(&a->parent);CHKERRQ(ierr); 159bf0cc555SLisandro Dalcin ierr = PetscFree(A->data);CHKERRQ(ierr); 160901853e0SKris Buschelman 161dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 162bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 163bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 164bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr); 165bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL);CHKERRQ(ierr); 166bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL);CHKERRQ(ierr); 167bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 16838f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 169bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqsbstrm_C",NULL);CHKERRQ(ierr); 170*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 171*6214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_elemental_C",NULL);CHKERRQ(ierr); 172*6214f412SHong Zhang #endif 17349b5e25fSSatish Balay PetscFunctionReturn(0); 17449b5e25fSSatish Balay } 17549b5e25fSSatish Balay 1764a2ae208SSatish Balay #undef __FUNCT__ 1774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ" 178ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg) 17949b5e25fSSatish Balay { 180045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 18163ba0a88SBarry Smith PetscErrorCode ierr; 18249b5e25fSSatish Balay 18349b5e25fSSatish Balay PetscFunctionBegin; 1844d9d31abSKris Buschelman switch (op) { 1854d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 1864e0d8c25SBarry Smith a->roworiented = flg; 1874d9d31abSKris Buschelman break; 188a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 189a9817697SBarry Smith a->keepnonzeropattern = flg; 1904d9d31abSKris Buschelman break; 191512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 192512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1934d9d31abSKris Buschelman break; 1944d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1954e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1964d9d31abSKris Buschelman break; 1974d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1984e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1994d9d31abSKris Buschelman break; 20028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 20128b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 20228b2fa4aSMatthew Knepley break; 2034e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 2044d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 2054d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 206290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 2074d9d31abSKris Buschelman break; 2089a4540c5SBarry Smith case MAT_HERMITIAN: 209e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 2100bc54ff2SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 211eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian_ushort; 2120bc54ff2SBarry Smith } else if (A->cmap->bs == 1) { 213eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian; 214e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1"); 215eeffb40dSHong Zhang break; 2163d472b54SHong Zhang case MAT_SPD: 2175021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 2183d472b54SHong Zhang break; 21977e54ba9SKris Buschelman case MAT_SYMMETRIC: 22077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 2219a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 2224dcd73b1SHong Zhang /* These options are handled directly by MatSetOption() */ 223290bbb0aSBarry Smith break; 224941593c8SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 2254e0d8c25SBarry Smith a->ignore_ltriangular = flg; 226941593c8SHong Zhang break; 227941593c8SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 2284e0d8c25SBarry Smith a->ignore_ltriangular = flg; 22977e54ba9SKris Buschelman break; 230f5edf698SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 2314e0d8c25SBarry Smith a->getrow_utriangular = flg; 232f5edf698SHong Zhang break; 2334d9d31abSKris Buschelman default: 234e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 23549b5e25fSSatish Balay } 23649b5e25fSSatish Balay PetscFunctionReturn(0); 23749b5e25fSSatish Balay } 23849b5e25fSSatish Balay 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ" 24152768537SHong Zhang PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 24249b5e25fSSatish Balay { 24349b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 2446849ba73SBarry Smith PetscErrorCode ierr; 24549b5e25fSSatish Balay 24649b5e25fSSatish Balay PetscFunctionBegin; 247e32f2f54SBarry Smith if (A && !a->getrow_utriangular) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()"); 24852768537SHong Zhang 249f5edf698SHong Zhang /* Get the upper triangular part of the row */ 25052768537SHong Zhang ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr); 25149b5e25fSSatish Balay PetscFunctionReturn(0); 25249b5e25fSSatish Balay } 25349b5e25fSSatish Balay 2544a2ae208SSatish Balay #undef __FUNCT__ 2554a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ" 25613f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 25749b5e25fSSatish Balay { 258dfbe8321SBarry Smith PetscErrorCode ierr; 25949b5e25fSSatish Balay 26049b5e25fSSatish Balay PetscFunctionBegin; 26105b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 26205b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 26349b5e25fSSatish Balay PetscFunctionReturn(0); 26449b5e25fSSatish Balay } 26549b5e25fSSatish Balay 2664a2ae208SSatish Balay #undef __FUNCT__ 267f5edf698SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_SeqSBAIJ" 268f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A) 269f5edf698SHong Zhang { 270f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 271f5edf698SHong Zhang 272f5edf698SHong Zhang PetscFunctionBegin; 273f5edf698SHong Zhang a->getrow_utriangular = PETSC_TRUE; 274f5edf698SHong Zhang PetscFunctionReturn(0); 275f5edf698SHong Zhang } 276f5edf698SHong Zhang #undef __FUNCT__ 277f5edf698SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_SeqSBAIJ" 278f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A) 279f5edf698SHong Zhang { 280f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 281f5edf698SHong Zhang 282f5edf698SHong Zhang PetscFunctionBegin; 283f5edf698SHong Zhang a->getrow_utriangular = PETSC_FALSE; 284f5edf698SHong Zhang PetscFunctionReturn(0); 285f5edf698SHong Zhang } 286f5edf698SHong Zhang 287f5edf698SHong Zhang #undef __FUNCT__ 2884a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ" 289fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B) 29049b5e25fSSatish Balay { 291dfbe8321SBarry Smith PetscErrorCode ierr; 2925fd66863SKarl Rupp 29349b5e25fSSatish Balay PetscFunctionBegin; 294815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 295999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 296fc4dec0aSBarry Smith } 2978115998fSBarry Smith PetscFunctionReturn(0); 29849b5e25fSSatish Balay } 29949b5e25fSSatish Balay 3004a2ae208SSatish Balay #undef __FUNCT__ 3014a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII" 3027da1fb6eSBarry Smith PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 30349b5e25fSSatish Balay { 30449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 305dfbe8321SBarry Smith PetscErrorCode ierr; 306d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 307f3ef73ceSBarry Smith PetscViewerFormat format; 308121deb67SSatish Balay PetscInt *diag; 30949b5e25fSSatish Balay 31049b5e25fSSatish Balay PetscFunctionBegin; 311b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 312456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 31377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 314fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 315d2507d54SMatthew Knepley Mat aij; 316d5f3da31SBarry Smith if (A->factortype && bs>1) { 31770d5e725SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n");CHKERRQ(ierr); 31870d5e725SHong Zhang PetscFunctionReturn(0); 31970d5e725SHong Zhang } 320c9f458caSMatthew Knepley ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 321c9f458caSMatthew Knepley ierr = MatView(aij,viewer);CHKERRQ(ierr); 3226bf464f9SBarry Smith ierr = MatDestroy(&aij);CHKERRQ(ierr); 323fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 324d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 32549b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 32649b5e25fSSatish Balay for (j=0; j<bs; j++) { 32777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 32849b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 32949b5e25fSSatish Balay for (l=0; l<bs; l++) { 33049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 33149b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 33357622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33449b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 33657622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33749b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33949b5e25fSSatish Balay } 34049b5e25fSSatish Balay #else 34149b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 34257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 34349b5e25fSSatish Balay } 34449b5e25fSSatish Balay #endif 34549b5e25fSSatish Balay } 34649b5e25fSSatish Balay } 347b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 34849b5e25fSSatish Balay } 34949b5e25fSSatish Balay } 350d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 351c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 352c1490034SHong Zhang PetscFunctionReturn(0); 35349b5e25fSSatish Balay } else { 354d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 3552c990fa1SHong Zhang if (A->factortype) { /* for factored matrix */ 3562c990fa1SHong Zhang if (bs>1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet"); 3572c990fa1SHong Zhang 358121deb67SSatish Balay diag=a->diag; 359121deb67SSatish Balay for (i=0; i<a->mbs; i++) { /* for row block i */ 3602c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 3612c990fa1SHong Zhang /* diagonal entry */ 3622c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 3632c990fa1SHong Zhang if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) { 36457622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3652c990fa1SHong Zhang } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) { 36657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3672c990fa1SHong Zhang } else { 36857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3692c990fa1SHong Zhang } 3702c990fa1SHong Zhang #else 3716712e2f1SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3722c990fa1SHong Zhang #endif 3732c990fa1SHong Zhang /* off-diagonal entries */ 3742c990fa1SHong Zhang for (k=a->i[i]; k<a->i[i+1]-1; k++) { 3752c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 376ca0704adSBarry Smith if (PetscImaginaryPart(a->a[k]) > 0.0) { 37757622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 378ca0704adSBarry Smith } else if (PetscImaginaryPart(a->a[k]) < 0.0) { 37957622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 3802c990fa1SHong Zhang } else { 38157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]));CHKERRQ(ierr); 3822c990fa1SHong Zhang } 3832c990fa1SHong Zhang #else 38457622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[k],(double)a->a[k]);CHKERRQ(ierr); 3852c990fa1SHong Zhang #endif 3862c990fa1SHong Zhang } 3872c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 3882c990fa1SHong Zhang } 3892c990fa1SHong Zhang 3902c990fa1SHong Zhang } else { /* for non-factored matrix */ 3910c74a584SJed Brown for (i=0; i<a->mbs; i++) { /* for row block i */ 3920c74a584SJed Brown for (j=0; j<bs; j++) { /* for row bs*i + j */ 39377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 3940c74a584SJed Brown for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */ 3950c74a584SJed Brown for (l=0; l<bs; l++) { /* for column */ 39649b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 39749b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 39857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 39957622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40049b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 40157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 40257622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40349b5e25fSSatish Balay } else { 40457622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 40549b5e25fSSatish Balay } 40649b5e25fSSatish Balay #else 40757622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 40849b5e25fSSatish Balay #endif 40949b5e25fSSatish Balay } 41049b5e25fSSatish Balay } 411b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 41249b5e25fSSatish Balay } 41349b5e25fSSatish Balay } 4142c990fa1SHong Zhang } 415d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 41649b5e25fSSatish Balay } 417b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 41849b5e25fSSatish Balay PetscFunctionReturn(0); 41949b5e25fSSatish Balay } 42049b5e25fSSatish Balay 4219804daf3SBarry Smith #include <petscdraw.h> 4224a2ae208SSatish Balay #undef __FUNCT__ 4234a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom" 4246849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 42549b5e25fSSatish Balay { 42649b5e25fSSatish Balay Mat A = (Mat) Aa; 42749b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 4286849ba73SBarry Smith PetscErrorCode ierr; 429d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 43013f74950SBarry Smith PetscMPIInt rank; 43149b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 43249b5e25fSSatish Balay MatScalar *aa; 43349b5e25fSSatish Balay MPI_Comm comm; 434b0a32e0cSBarry Smith PetscViewer viewer; 43549b5e25fSSatish Balay 43649b5e25fSSatish Balay PetscFunctionBegin; 43749b5e25fSSatish Balay /* 43849b5e25fSSatish Balay This is nasty. If this is called from an originally parallel matrix 43949b5e25fSSatish Balay then all processes call this,but only the first has the matrix so the 44049b5e25fSSatish Balay rest should return immediately. 44149b5e25fSSatish Balay */ 44249b5e25fSSatish Balay ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr); 44349b5e25fSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 44449b5e25fSSatish Balay if (rank) PetscFunctionReturn(0); 44549b5e25fSSatish Balay 44649b5e25fSSatish Balay ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 44749b5e25fSSatish Balay 448b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 449b0a32e0cSBarry Smith PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric"); 45049b5e25fSSatish Balay 45149b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 452b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 45349b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 45449b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 455d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 45649b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 45749b5e25fSSatish Balay aa = a->a + j*bs2; 45849b5e25fSSatish Balay for (k=0; k<bs; k++) { 45949b5e25fSSatish Balay for (l=0; l<bs; l++) { 46049b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 461b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 46249b5e25fSSatish Balay } 46349b5e25fSSatish Balay } 46449b5e25fSSatish Balay } 46549b5e25fSSatish Balay } 466b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 46749b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 46849b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 469d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 47049b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 47149b5e25fSSatish Balay aa = a->a + j*bs2; 47249b5e25fSSatish Balay for (k=0; k<bs; k++) { 47349b5e25fSSatish Balay for (l=0; l<bs; l++) { 47449b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 475b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 47649b5e25fSSatish Balay } 47749b5e25fSSatish Balay } 47849b5e25fSSatish Balay } 47949b5e25fSSatish Balay } 48049b5e25fSSatish Balay 481b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 48249b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 48349b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 484d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 48549b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 48649b5e25fSSatish Balay aa = a->a + j*bs2; 48749b5e25fSSatish Balay for (k=0; k<bs; k++) { 48849b5e25fSSatish Balay for (l=0; l<bs; l++) { 48949b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 490b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 49149b5e25fSSatish Balay } 49249b5e25fSSatish Balay } 49349b5e25fSSatish Balay } 49449b5e25fSSatish Balay } 49549b5e25fSSatish Balay PetscFunctionReturn(0); 49649b5e25fSSatish Balay } 49749b5e25fSSatish Balay 4984a2ae208SSatish Balay #undef __FUNCT__ 4994a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw" 5006849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 50149b5e25fSSatish Balay { 502dfbe8321SBarry Smith PetscErrorCode ierr; 50349b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 504b0a32e0cSBarry Smith PetscDraw draw; 505ace3abfcSBarry Smith PetscBool isnull; 50649b5e25fSSatish Balay 50749b5e25fSSatish Balay PetscFunctionBegin; 508b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 509b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 51049b5e25fSSatish Balay 51149b5e25fSSatish Balay ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 512d0f46423SBarry Smith xr = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 51349b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 514b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 515b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 5160298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 51749b5e25fSSatish Balay PetscFunctionReturn(0); 51849b5e25fSSatish Balay } 51949b5e25fSSatish Balay 5204a2ae208SSatish Balay #undef __FUNCT__ 5214a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ" 522dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 52349b5e25fSSatish Balay { 524dfbe8321SBarry Smith PetscErrorCode ierr; 525ace3abfcSBarry Smith PetscBool iascii,isdraw; 52608917f38SBarry Smith FILE *file = 0; 52749b5e25fSSatish Balay 52849b5e25fSSatish Balay PetscFunctionBegin; 529251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 530251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 53132077d6dSBarry Smith if (iascii) { 53249b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 53349b5e25fSSatish Balay } else if (isdraw) { 53449b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr); 53549b5e25fSSatish Balay } else { 536a5e6ed63SBarry Smith Mat B; 537ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 538a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 5396bf464f9SBarry Smith ierr = MatDestroy(&B);CHKERRQ(ierr); 54008917f38SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 54108917f38SBarry Smith if (file) { 54208917f38SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 54308917f38SBarry Smith } 54449b5e25fSSatish Balay } 54549b5e25fSSatish Balay PetscFunctionReturn(0); 54649b5e25fSSatish Balay } 54749b5e25fSSatish Balay 54849b5e25fSSatish Balay 5494a2ae208SSatish Balay #undef __FUNCT__ 5504a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ" 55113f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 55249b5e25fSSatish Balay { 553045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 55413f74950SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 55513f74950SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 556d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 55797e567efSBarry Smith MatScalar *ap,*aa = a->a; 55849b5e25fSSatish Balay 55949b5e25fSSatish Balay PetscFunctionBegin; 56049b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 56149b5e25fSSatish Balay row = im[k]; brow = row/bs; 562e32f2f54SBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); */ 563e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 56449b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 56549b5e25fSSatish Balay nrow = ailen[brow]; 56649b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 567e32f2f54SBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); */ 568e32f2f54SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 56949b5e25fSSatish Balay col = in[l]; 57049b5e25fSSatish Balay bcol = col/bs; 57149b5e25fSSatish Balay cidx = col%bs; 57249b5e25fSSatish Balay ridx = row%bs; 57349b5e25fSSatish Balay high = nrow; 57449b5e25fSSatish Balay low = 0; /* assume unsorted */ 57549b5e25fSSatish Balay while (high-low > 5) { 57649b5e25fSSatish Balay t = (low+high)/2; 57749b5e25fSSatish Balay if (rp[t] > bcol) high = t; 57849b5e25fSSatish Balay else low = t; 57949b5e25fSSatish Balay } 58049b5e25fSSatish Balay for (i=low; i<high; i++) { 58149b5e25fSSatish Balay if (rp[i] > bcol) break; 58249b5e25fSSatish Balay if (rp[i] == bcol) { 58349b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 58449b5e25fSSatish Balay goto finished; 58549b5e25fSSatish Balay } 58649b5e25fSSatish Balay } 58797e567efSBarry Smith *v++ = 0.0; 58849b5e25fSSatish Balay finished:; 58949b5e25fSSatish Balay } 59049b5e25fSSatish Balay } 59149b5e25fSSatish Balay PetscFunctionReturn(0); 59249b5e25fSSatish Balay } 59349b5e25fSSatish Balay 59449b5e25fSSatish Balay 5954a2ae208SSatish Balay #undef __FUNCT__ 5964a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ" 59713f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 59849b5e25fSSatish Balay { 5990880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 6006849ba73SBarry Smith PetscErrorCode ierr; 601e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 60213f74950SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 603d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 604ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 605dd6ea824SBarry Smith const PetscScalar *value = v; 606f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 6070880e062SHong Zhang 60849b5e25fSSatish Balay PetscFunctionBegin; 60926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 61026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 61126fbe8dcSKarl Rupp 6120880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 6130880e062SHong Zhang row = im[k]; 6140880e062SHong Zhang if (row < 0) continue; 6152515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 616e32f2f54SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 6170880e062SHong Zhang #endif 6180880e062SHong Zhang rp = aj + ai[row]; 6190880e062SHong Zhang ap = aa + bs2*ai[row]; 6200880e062SHong Zhang rmax = imax[row]; 6210880e062SHong Zhang nrow = ailen[row]; 6220880e062SHong Zhang low = 0; 623818f2c47SBarry Smith high = nrow; 6240880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 6250880e062SHong Zhang if (in[l] < 0) continue; 6260880e062SHong Zhang col = in[l]; 6272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 628e32f2f54SBarry Smith if (col >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",col,a->nbs-1); 629b1823623SSatish Balay #endif 630b98bf0e1SJed Brown if (col < row) { 63126fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular block */ 63226fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 633b98bf0e1SJed Brown } 63426fbe8dcSKarl Rupp if (roworiented) value = v + k*(stepval+bs)*bs + l*bs; 63526fbe8dcSKarl Rupp else value = v + l*(stepval+bs)*bs + k*bs; 63626fbe8dcSKarl Rupp 63726fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 63826fbe8dcSKarl Rupp else high = nrow; 63926fbe8dcSKarl Rupp 640e2ee6c50SBarry Smith lastcol = col; 6410880e062SHong Zhang while (high-low > 7) { 6420880e062SHong Zhang t = (low+high)/2; 6430880e062SHong Zhang if (rp[t] > col) high = t; 6440880e062SHong Zhang else low = t; 6450880e062SHong Zhang } 6460880e062SHong Zhang for (i=low; i<high; i++) { 6470880e062SHong Zhang if (rp[i] > col) break; 6480880e062SHong Zhang if (rp[i] == col) { 6490880e062SHong Zhang bap = ap + bs2*i; 6500880e062SHong Zhang if (roworiented) { 6510880e062SHong Zhang if (is == ADD_VALUES) { 6520880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6530880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6540880e062SHong Zhang bap[jj] += *value++; 6550880e062SHong Zhang } 6560880e062SHong Zhang } 6570880e062SHong Zhang } else { 6580880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6590880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6600880e062SHong Zhang bap[jj] = *value++; 6610880e062SHong Zhang } 6620880e062SHong Zhang } 6630880e062SHong Zhang } 6640880e062SHong Zhang } else { 6650880e062SHong Zhang if (is == ADD_VALUES) { 6660880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6670880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6680880e062SHong Zhang *bap++ += *value++; 6690880e062SHong Zhang } 6700880e062SHong Zhang } 6710880e062SHong Zhang } else { 6720880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6730880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6740880e062SHong Zhang *bap++ = *value++; 6750880e062SHong Zhang } 6760880e062SHong Zhang } 6770880e062SHong Zhang } 6780880e062SHong Zhang } 6790880e062SHong Zhang goto noinsert2; 6800880e062SHong Zhang } 6810880e062SHong Zhang } 6820880e062SHong Zhang if (nonew == 1) goto noinsert2; 683e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 684fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 685c03d1d03SSatish Balay N = nrow++ - 1; high++; 6860880e062SHong Zhang /* shift up all the later entries in this row */ 6870880e062SHong Zhang for (ii=N; ii>=i; ii--) { 6880880e062SHong Zhang rp[ii+1] = rp[ii]; 6890880e062SHong Zhang ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 6900880e062SHong Zhang } 6910880e062SHong Zhang if (N >= i) { 6920880e062SHong Zhang ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 6930880e062SHong Zhang } 6940880e062SHong Zhang rp[i] = col; 6950880e062SHong Zhang bap = ap + bs2*i; 6960880e062SHong Zhang if (roworiented) { 6970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6980880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6990880e062SHong Zhang bap[jj] = *value++; 7000880e062SHong Zhang } 7010880e062SHong Zhang } 7020880e062SHong Zhang } else { 7030880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 7040880e062SHong Zhang for (jj=0; jj<bs; jj++) { 7050880e062SHong Zhang *bap++ = *value++; 7060880e062SHong Zhang } 7070880e062SHong Zhang } 7080880e062SHong Zhang } 7090880e062SHong Zhang noinsert2:; 7100880e062SHong Zhang low = i; 7110880e062SHong Zhang } 7120880e062SHong Zhang ailen[row] = nrow; 7130880e062SHong Zhang } 7140880e062SHong Zhang PetscFunctionReturn(0); 71549b5e25fSSatish Balay } 71649b5e25fSSatish Balay 71764831d72SBarry Smith /* 71864831d72SBarry Smith This is not yet used 71964831d72SBarry Smith */ 7204a2ae208SSatish Balay #undef __FUNCT__ 7214108e4d5SBarry Smith #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode" 7224108e4d5SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A) 7230def2e27SBarry Smith { 7240def2e27SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7250def2e27SBarry Smith PetscErrorCode ierr; 7260def2e27SBarry Smith const PetscInt *ai = a->i, *aj = a->j,*cols; 7270def2e27SBarry Smith PetscInt i = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts; 728ace3abfcSBarry Smith PetscBool flag; 7290def2e27SBarry Smith 7300def2e27SBarry Smith PetscFunctionBegin; 731785e854fSJed Brown ierr = PetscMalloc1(m,&ns);CHKERRQ(ierr); 7320def2e27SBarry Smith while (i < m) { 7330def2e27SBarry Smith nzx = ai[i+1] - ai[i]; /* Number of nonzeros */ 7340def2e27SBarry Smith /* Limits the number of elements in a node to 'a->inode.limit' */ 7350def2e27SBarry Smith for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) { 7360def2e27SBarry Smith nzy = ai[j+1] - ai[j]; 7370def2e27SBarry Smith if (nzy != (nzx - j + i)) break; 7380def2e27SBarry Smith ierr = PetscMemcmp(aj + ai[i] + j - i,aj + ai[j],nzy*sizeof(PetscInt),&flag);CHKERRQ(ierr); 7390def2e27SBarry Smith if (!flag) break; 7400def2e27SBarry Smith } 7410def2e27SBarry Smith ns[node_count++] = blk_size; 74226fbe8dcSKarl Rupp 7430def2e27SBarry Smith i = j; 7440def2e27SBarry Smith } 7450def2e27SBarry Smith if (!a->inode.size && m && node_count > .9*m) { 7460def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7470def2e27SBarry Smith ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr); 7480def2e27SBarry Smith } else { 7490def2e27SBarry Smith a->inode.node_count = node_count; 75026fbe8dcSKarl Rupp 751785e854fSJed Brown ierr = PetscMalloc1(node_count,&a->inode.size);CHKERRQ(ierr); 7523bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt));CHKERRQ(ierr); 75322d28d08SBarry Smith ierr = PetscMemcpy(a->inode.size,ns,node_count*sizeof(PetscInt));CHKERRQ(ierr); 7540def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7550def2e27SBarry Smith ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr); 7560def2e27SBarry Smith 7570def2e27SBarry Smith /* count collections of adjacent columns in each inode */ 7580def2e27SBarry Smith row = 0; 7590def2e27SBarry Smith cnt = 0; 7600def2e27SBarry Smith for (i=0; i<node_count; i++) { 7610def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7620def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7630def2e27SBarry Smith for (j=1; j<nz; j++) { 76426fbe8dcSKarl Rupp if (cols[j] != cols[j-1]+1) cnt++; 7650def2e27SBarry Smith } 7660def2e27SBarry Smith cnt++; 7670def2e27SBarry Smith row += a->inode.size[i]; 7680def2e27SBarry Smith } 769785e854fSJed Brown ierr = PetscMalloc1(2*cnt,&counts);CHKERRQ(ierr); 7700def2e27SBarry Smith cnt = 0; 7710def2e27SBarry Smith row = 0; 7720def2e27SBarry Smith for (i=0; i<node_count; i++) { 7730def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7740def2e27SBarry Smith counts[2*cnt] = cols[0]; 7750def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7760def2e27SBarry Smith cnt2 = 1; 7770def2e27SBarry Smith for (j=1; j<nz; j++) { 7780def2e27SBarry Smith if (cols[j] != cols[j-1]+1) { 7790def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7800def2e27SBarry Smith counts[2*cnt] = cols[j]; 7810def2e27SBarry Smith cnt2 = 1; 7820def2e27SBarry Smith } else cnt2++; 7830def2e27SBarry Smith } 7840def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7850def2e27SBarry Smith row += a->inode.size[i]; 7860def2e27SBarry Smith } 78722d28d08SBarry Smith ierr = PetscIntView(2*cnt,counts,0);CHKERRQ(ierr); 7880def2e27SBarry Smith } 78938702af4SBarry Smith PetscFunctionReturn(0); 79038702af4SBarry Smith } 79138702af4SBarry Smith 79238702af4SBarry Smith #undef __FUNCT__ 7934a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ" 794dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 79549b5e25fSSatish Balay { 79649b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7976849ba73SBarry Smith PetscErrorCode ierr; 79813f74950SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 799d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 80013f74950SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 80149b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 80249b5e25fSSatish Balay 80349b5e25fSSatish Balay PetscFunctionBegin; 80449b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 80549b5e25fSSatish Balay 80649b5e25fSSatish Balay if (m) rmax = ailen[0]; 80749b5e25fSSatish Balay for (i=1; i<mbs; i++) { 80849b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 80949b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 81049b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 81149b5e25fSSatish Balay if (fshift) { 81249b5e25fSSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 81349b5e25fSSatish Balay N = ailen[i]; 81449b5e25fSSatish Balay for (j=0; j<N; j++) { 81549b5e25fSSatish Balay ip[j-fshift] = ip[j]; 81649b5e25fSSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 81749b5e25fSSatish Balay } 81849b5e25fSSatish Balay } 81949b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 82049b5e25fSSatish Balay } 82149b5e25fSSatish Balay if (mbs) { 82249b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 82349b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 82449b5e25fSSatish Balay } 82549b5e25fSSatish Balay /* reset ilen and imax for each row */ 82649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 82749b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 82849b5e25fSSatish Balay } 8296c6c5352SBarry Smith a->nz = ai[mbs]; 83049b5e25fSSatish Balay 831b424e231SHong Zhang /* diagonals may have moved, reset it */ 832b424e231SHong Zhang if (a->diag) { 8332ed38d0bSJed Brown ierr = PetscMemcpy(a->diag,ai,mbs*sizeof(PetscInt));CHKERRQ(ierr); 83449b5e25fSSatish Balay } 83526fbe8dcSKarl Rupp if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 83626fbe8dcSKarl Rupp 837d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 838ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 839ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 84026fbe8dcSKarl Rupp 8418e58a170SBarry Smith A->info.mallocs += a->reallocs; 84249b5e25fSSatish Balay a->reallocs = 0; 84349b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 844061b2667SBarry Smith a->idiagvalid = PETSC_FALSE; 8454dcd73b1SHong Zhang a->rmax = rmax; 84638702af4SBarry Smith 84738702af4SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 84844e1c64aSLisandro Dalcin if (a->jshort && a->free_jshort) { 84917803ae8SHong Zhang /* when matrix data structure is changed, previous jshort must be replaced */ 85017803ae8SHong Zhang ierr = PetscFree(a->jshort);CHKERRQ(ierr); 85117803ae8SHong Zhang } 852785e854fSJed Brown ierr = PetscMalloc1(a->i[A->rmap->n],&a->jshort);CHKERRQ(ierr); 8533bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short));CHKERRQ(ierr); 85438702af4SBarry Smith for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i]; 85538702af4SBarry Smith A->ops->mult = MatMult_SeqSBAIJ_1_ushort; 85641f059aeSBarry Smith A->ops->sor = MatSOR_SeqSBAIJ_ushort; 8574da8f245SBarry Smith a->free_jshort = PETSC_TRUE; 85838702af4SBarry Smith } 85949b5e25fSSatish Balay PetscFunctionReturn(0); 86049b5e25fSSatish Balay } 86149b5e25fSSatish Balay 86249b5e25fSSatish Balay /* 86349b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 86449b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 86549b5e25fSSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 86649b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 86749b5e25fSSatish Balay */ 8684a2ae208SSatish Balay #undef __FUNCT__ 8694a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks" 87013f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 87149b5e25fSSatish Balay { 87213f74950SBarry Smith PetscInt i,j,k,row; 873ace3abfcSBarry Smith PetscBool flg; 87449b5e25fSSatish Balay 87549b5e25fSSatish Balay PetscFunctionBegin; 87649b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 87749b5e25fSSatish Balay row = idx[i]; 87849b5e25fSSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 87949b5e25fSSatish Balay sizes[j] = 1; 88049b5e25fSSatish Balay i++; 88149b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 88249b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 88349b5e25fSSatish Balay i++; 88449b5e25fSSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 88549b5e25fSSatish Balay flg = PETSC_TRUE; 88649b5e25fSSatish Balay for (k=1; k<bs; k++) { 88749b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 88849b5e25fSSatish Balay flg = PETSC_FALSE; 88949b5e25fSSatish Balay break; 89049b5e25fSSatish Balay } 89149b5e25fSSatish Balay } 892abc0a331SBarry Smith if (flg) { /* No break in the bs */ 89349b5e25fSSatish Balay sizes[j] = bs; 89449b5e25fSSatish Balay i += bs; 89549b5e25fSSatish Balay } else { 89649b5e25fSSatish Balay sizes[j] = 1; 89749b5e25fSSatish Balay i++; 89849b5e25fSSatish Balay } 89949b5e25fSSatish Balay } 90049b5e25fSSatish Balay } 90149b5e25fSSatish Balay *bs_max = j; 90249b5e25fSSatish Balay PetscFunctionReturn(0); 90349b5e25fSSatish Balay } 90449b5e25fSSatish Balay 90549b5e25fSSatish Balay 90649b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 90749b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 90849b5e25fSSatish Balay */ 90949b5e25fSSatish Balay 9104a2ae208SSatish Balay #undef __FUNCT__ 9114a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ" 91213f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 91349b5e25fSSatish Balay { 91449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 9156849ba73SBarry Smith PetscErrorCode ierr; 916e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 91713f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 918d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 91913f74950SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 92049b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 92149b5e25fSSatish Balay 92249b5e25fSSatish Balay PetscFunctionBegin; 92349b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 92449b5e25fSSatish Balay row = im[k]; /* row number */ 92549b5e25fSSatish Balay brow = row/bs; /* block row number */ 92649b5e25fSSatish Balay if (row < 0) continue; 9272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 928e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 92949b5e25fSSatish Balay #endif 93049b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 93149b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 93249b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 93349b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 93449b5e25fSSatish Balay low = 0; 93549b5e25fSSatish Balay 93649b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 93749b5e25fSSatish Balay if (in[l] < 0) continue; 9382515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 939e32f2f54SBarry Smith if (in[l] >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->rmap->N-1); 94049b5e25fSSatish Balay #endif 94149b5e25fSSatish Balay col = in[l]; 94249b5e25fSSatish Balay bcol = col/bs; /* block col number */ 94349b5e25fSSatish Balay 944941593c8SHong Zhang if (brow > bcol) { 94526fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular values */ 94626fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 947941593c8SHong Zhang } 948f4989cb3SHong Zhang 94949b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 9508549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)) { 95149b5e25fSSatish Balay /* element value a(k,l) */ 95226fbe8dcSKarl Rupp if (roworiented) value = v[l + k*n]; 95326fbe8dcSKarl Rupp else value = v[k + l*m]; 95449b5e25fSSatish Balay 95549b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 95626fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 95726fbe8dcSKarl Rupp high = nrow; 958e2ee6c50SBarry Smith lastcol = col; 95949b5e25fSSatish Balay while (high-low > 7) { 96049b5e25fSSatish Balay t = (low+high)/2; 96149b5e25fSSatish Balay if (rp[t] > bcol) high = t; 96249b5e25fSSatish Balay else low = t; 96349b5e25fSSatish Balay } 96449b5e25fSSatish Balay for (i=low; i<high; i++) { 96549b5e25fSSatish Balay if (rp[i] > bcol) break; 96649b5e25fSSatish Balay if (rp[i] == bcol) { 96749b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 96849b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 96949b5e25fSSatish Balay else *bap = value; 9708549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 9718549e402SHong Zhang if (brow == bcol && ridx < cidx) { 9728549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 9738549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 9748549e402SHong Zhang else *bap = value; 9758549e402SHong Zhang } 97649b5e25fSSatish Balay goto noinsert1; 97749b5e25fSSatish Balay } 97849b5e25fSSatish Balay } 97949b5e25fSSatish Balay 98049b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 981e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 982fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 98349b5e25fSSatish Balay 984c03d1d03SSatish Balay N = nrow++ - 1; high++; 98549b5e25fSSatish Balay /* shift up all the later entries in this row */ 98649b5e25fSSatish Balay for (ii=N; ii>=i; ii--) { 98749b5e25fSSatish Balay rp[ii+1] = rp[ii]; 98849b5e25fSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 98949b5e25fSSatish Balay } 99049b5e25fSSatish Balay if (N>=i) { 99149b5e25fSSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 99249b5e25fSSatish Balay } 99349b5e25fSSatish Balay rp[i] = bcol; 99449b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 995e56f5c9eSBarry Smith A->nonzerostate++; 99649b5e25fSSatish Balay noinsert1:; 99749b5e25fSSatish Balay low = i; 9988549e402SHong Zhang } 99949b5e25fSSatish Balay } /* end of loop over added columns */ 100049b5e25fSSatish Balay ailen[brow] = nrow; 100149b5e25fSSatish Balay } /* end of loop over added rows */ 100249b5e25fSSatish Balay PetscFunctionReturn(0); 100349b5e25fSSatish Balay } 100449b5e25fSSatish Balay 10054a2ae208SSatish Balay #undef __FUNCT__ 10064d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ" 10070481f469SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info) 100849b5e25fSSatish Balay { 10094ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 101049b5e25fSSatish Balay Mat outA; 1011dfbe8321SBarry Smith PetscErrorCode ierr; 1012ace3abfcSBarry Smith PetscBool row_identity; 101349b5e25fSSatish Balay 101449b5e25fSSatish Balay PetscFunctionBegin; 1015e32f2f54SBarry Smith if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc"); 1016c84f5b01SHong Zhang ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 1017e32f2f54SBarry Smith if (!row_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported"); 1018e32f2f54SBarry Smith if (inA->rmap->bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %D is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */ 1019c84f5b01SHong Zhang 102049b5e25fSSatish Balay outA = inA; 1021d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_ICC; 102249b5e25fSSatish Balay 10231a3463dfSHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr); 1024d595f711SHong Zhang ierr = MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity);CHKERRQ(ierr); 102549b5e25fSSatish Balay 1026c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10276bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1028c84f5b01SHong Zhang a->row = row; 1029c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10306bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1031c84f5b01SHong Zhang a->col = row; 1032c84f5b01SHong Zhang 1033c84f5b01SHong Zhang /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */ 1034c84f5b01SHong Zhang if (a->icol) {ierr = ISInvertPermutation(row,PETSC_DECIDE, &a->icol);CHKERRQ(ierr);} 10353bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr); 103649b5e25fSSatish Balay 103749b5e25fSSatish Balay if (!a->solve_work) { 1038854ce69bSBarry Smith ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr); 10393bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 104049b5e25fSSatish Balay } 104149b5e25fSSatish Balay 1042719d5645SBarry Smith ierr = MatCholeskyFactorNumeric(outA,inA,info);CHKERRQ(ierr); 104349b5e25fSSatish Balay PetscFunctionReturn(0); 104449b5e25fSSatish Balay } 1045950f1e5bSHong Zhang 10464a2ae208SSatish Balay #undef __FUNCT__ 10474a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ" 10487087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices) 104949b5e25fSSatish Balay { 1050045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ*)mat->data; 105113f74950SBarry Smith PetscInt i,nz,n; 10527827cd58SJed Brown PetscErrorCode ierr; 105349b5e25fSSatish Balay 105449b5e25fSSatish Balay PetscFunctionBegin; 10556c6c5352SBarry Smith nz = baij->maxnz; 1056d0f46423SBarry Smith n = mat->cmap->n; 105726fbe8dcSKarl Rupp for (i=0; i<nz; i++) baij->j[i] = indices[i]; 105826fbe8dcSKarl Rupp 10596c6c5352SBarry Smith baij->nz = nz; 106026fbe8dcSKarl Rupp for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i]; 106126fbe8dcSKarl Rupp 10627827cd58SJed Brown ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 106349b5e25fSSatish Balay PetscFunctionReturn(0); 106449b5e25fSSatish Balay } 106549b5e25fSSatish Balay 10664a2ae208SSatish Balay #undef __FUNCT__ 10674a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices" 106849b5e25fSSatish Balay /*@ 106919585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 107049b5e25fSSatish Balay in the matrix. 107149b5e25fSSatish Balay 107249b5e25fSSatish Balay Input Parameters: 107319585528SSatish Balay + mat - the SeqSBAIJ matrix 107449b5e25fSSatish Balay - indices - the column indices 107549b5e25fSSatish Balay 107649b5e25fSSatish Balay Level: advanced 107749b5e25fSSatish Balay 107849b5e25fSSatish Balay Notes: 107949b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 108049b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 108149b5e25fSSatish Balay of the MatSetValues() operation. 108249b5e25fSSatish Balay 108349b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 1084d1be2dadSMatthew Knepley MatCreateSeqSBAIJ(), and the columns indices MUST be sorted. 108549b5e25fSSatish Balay 1086ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 108749b5e25fSSatish Balay 1088ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ 108949b5e25fSSatish Balay @*/ 10907087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices) 109149b5e25fSSatish Balay { 10924ac538c5SBarry Smith PetscErrorCode ierr; 109349b5e25fSSatish Balay 109449b5e25fSSatish Balay PetscFunctionBegin; 10950700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 10964482741eSBarry Smith PetscValidPointer(indices,2); 10974ac538c5SBarry Smith ierr = PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr); 109849b5e25fSSatish Balay PetscFunctionReturn(0); 109949b5e25fSSatish Balay } 110049b5e25fSSatish Balay 11014a2ae208SSatish Balay #undef __FUNCT__ 11023c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqSBAIJ" 11033c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str) 11043c896bc6SHong Zhang { 11053c896bc6SHong Zhang PetscErrorCode ierr; 11063c896bc6SHong Zhang 11073c896bc6SHong Zhang PetscFunctionBegin; 11083c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 11093c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 11103c896bc6SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11113c896bc6SHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 11123c896bc6SHong Zhang 1113e7e72b3dSBarry Smith if (a->i[A->rmap->N] != b->i[B->rmap->N]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1114d0f46423SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 11153c896bc6SHong Zhang } else { 1116f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 11173c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1118f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 11193c896bc6SHong Zhang } 11203c896bc6SHong Zhang PetscFunctionReturn(0); 11213c896bc6SHong Zhang } 11223c896bc6SHong Zhang 11233c896bc6SHong Zhang #undef __FUNCT__ 11244994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqSBAIJ" 11254994cf47SJed Brown PetscErrorCode MatSetUp_SeqSBAIJ(Mat A) 1126273d9f13SBarry Smith { 1127dfbe8321SBarry Smith PetscErrorCode ierr; 1128273d9f13SBarry Smith 1129273d9f13SBarry Smith PetscFunctionBegin; 1130535b19f3SBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr); 1131273d9f13SBarry Smith PetscFunctionReturn(0); 1132273d9f13SBarry Smith } 1133273d9f13SBarry Smith 1134a6ece127SHong Zhang #undef __FUNCT__ 11358c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJGetArray_SeqSBAIJ" 11368c778c55SBarry Smith PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1137a6ece127SHong Zhang { 1138a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11395fd66863SKarl Rupp 1140a6ece127SHong Zhang PetscFunctionBegin; 1141a6ece127SHong Zhang *array = a->a; 1142a6ece127SHong Zhang PetscFunctionReturn(0); 1143a6ece127SHong Zhang } 1144a6ece127SHong Zhang 1145a6ece127SHong Zhang #undef __FUNCT__ 11468c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJRestoreArray_SeqSBAIJ" 11478c778c55SBarry Smith PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1148a6ece127SHong Zhang { 1149a6ece127SHong Zhang PetscFunctionBegin; 1150a6ece127SHong Zhang PetscFunctionReturn(0); 1151a6ece127SHong Zhang } 1152a6ece127SHong Zhang 115342ee4b1aSHong Zhang #undef __FUNCT__ 115452768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqSBAIJ" 115552768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz) 115652768537SHong Zhang { 1157b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 115852768537SHong Zhang Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ*)X->data; 115952768537SHong Zhang Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ*)Y->data; 1160b264fe52SHong Zhang PetscErrorCode ierr; 116152768537SHong Zhang 116252768537SHong Zhang PetscFunctionBegin; 116352768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 1164b264fe52SHong Zhang ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr); 116552768537SHong Zhang PetscFunctionReturn(0); 116652768537SHong Zhang } 116752768537SHong Zhang 116852768537SHong Zhang #undef __FUNCT__ 116942ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ" 1170f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 117142ee4b1aSHong Zhang { 117242ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data; 1173dfbe8321SBarry Smith PetscErrorCode ierr; 117431ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 1175e838b9e7SJed Brown PetscBLASInt one = 1; 117642ee4b1aSHong Zhang 117742ee4b1aSHong Zhang PetscFunctionBegin; 117842ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 1179f4df32b1SMatthew Knepley PetscScalar alpha = a; 1180c5df96a5SBarry Smith PetscBLASInt bnz; 1181c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 11828b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1183a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1184ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1185ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE);CHKERRQ(ierr); 1186ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 1187ab784542SHong Zhang ierr = MatSetOption(X,MAT_GETROW_UPPERTRIANGULAR,PETSC_FALSE);CHKERRQ(ierr); 118842ee4b1aSHong Zhang } else { 118952768537SHong Zhang Mat B; 119052768537SHong Zhang PetscInt *nnz; 119152768537SHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1192f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 119352768537SHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 119452768537SHong Zhang ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr); 119552768537SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 119652768537SHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 119752768537SHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 119852768537SHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 119952768537SHong Zhang ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr); 120052768537SHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz);CHKERRQ(ierr); 120152768537SHong Zhang ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 120252768537SHong Zhang 120352768537SHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 120452768537SHong Zhang 120552768537SHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 120652768537SHong Zhang ierr = PetscFree(nnz);CHKERRQ(ierr); 1207f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 120852768537SHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 120942ee4b1aSHong Zhang } 121042ee4b1aSHong Zhang PetscFunctionReturn(0); 121142ee4b1aSHong Zhang } 121242ee4b1aSHong Zhang 1213efcf0fc3SBarry Smith #undef __FUNCT__ 1214efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ" 1215ace3abfcSBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1216efcf0fc3SBarry Smith { 1217efcf0fc3SBarry Smith PetscFunctionBegin; 1218efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1219efcf0fc3SBarry Smith PetscFunctionReturn(0); 1220efcf0fc3SBarry Smith } 1221efcf0fc3SBarry Smith 1222efcf0fc3SBarry Smith #undef __FUNCT__ 1223efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ" 1224ace3abfcSBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool *flg) 1225efcf0fc3SBarry Smith { 1226efcf0fc3SBarry Smith PetscFunctionBegin; 1227efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1228efcf0fc3SBarry Smith PetscFunctionReturn(0); 1229efcf0fc3SBarry Smith } 1230efcf0fc3SBarry Smith 1231efcf0fc3SBarry Smith #undef __FUNCT__ 1232efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ" 1233ace3abfcSBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1234efcf0fc3SBarry Smith { 1235efcf0fc3SBarry Smith PetscFunctionBegin; 1236efcf0fc3SBarry Smith *flg = PETSC_FALSE; 1237efcf0fc3SBarry Smith PetscFunctionReturn(0); 1238efcf0fc3SBarry Smith } 1239efcf0fc3SBarry Smith 124099cafbc1SBarry Smith #undef __FUNCT__ 124199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqSBAIJ" 124299cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A) 124399cafbc1SBarry Smith { 124499cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 124599cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1246dd6ea824SBarry Smith MatScalar *aa = a->a; 124799cafbc1SBarry Smith 124899cafbc1SBarry Smith PetscFunctionBegin; 124999cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 125099cafbc1SBarry Smith PetscFunctionReturn(0); 125199cafbc1SBarry Smith } 125299cafbc1SBarry Smith 125399cafbc1SBarry Smith #undef __FUNCT__ 125499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqSBAIJ" 125599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A) 125699cafbc1SBarry Smith { 125799cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 125899cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1259dd6ea824SBarry Smith MatScalar *aa = a->a; 126099cafbc1SBarry Smith 126199cafbc1SBarry Smith PetscFunctionBegin; 126299cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 126399cafbc1SBarry Smith PetscFunctionReturn(0); 126499cafbc1SBarry Smith } 126599cafbc1SBarry Smith 12663bededecSBarry Smith #undef __FUNCT__ 12673bededecSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqSBAIJ" 12683bededecSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 12693bededecSBarry Smith { 12703bededecSBarry Smith Mat_SeqSBAIJ *baij=(Mat_SeqSBAIJ*)A->data; 12713bededecSBarry Smith PetscErrorCode ierr; 12723bededecSBarry Smith PetscInt i,j,k,count; 12733bededecSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 12743bededecSBarry Smith PetscScalar zero = 0.0; 12753bededecSBarry Smith MatScalar *aa; 12763bededecSBarry Smith const PetscScalar *xx; 12773bededecSBarry Smith PetscScalar *bb; 127856777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 12793bededecSBarry Smith 12803bededecSBarry Smith PetscFunctionBegin; 12813bededecSBarry Smith /* fix right hand side if needed */ 12823bededecSBarry Smith if (x && b) { 12833bededecSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 12843bededecSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 128556777dd2SBarry Smith vecs = PETSC_TRUE; 12863bededecSBarry Smith } 12873bededecSBarry Smith 12883bededecSBarry Smith /* zero the columns */ 12891795a4d1SJed Brown ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr); 12903bededecSBarry Smith for (i=0; i<is_n; i++) { 12913bededecSBarry Smith if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]); 12923bededecSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 12933bededecSBarry Smith } 129456777dd2SBarry Smith if (vecs) { 129556777dd2SBarry Smith for (i=0; i<A->rmap->N; i++) { 129656777dd2SBarry Smith row = i/bs; 129756777dd2SBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 129856777dd2SBarry Smith for (k=0; k<bs; k++) { 129956777dd2SBarry Smith col = bs*baij->j[j] + k; 130056777dd2SBarry Smith if (col <= i) continue; 130156777dd2SBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 130226fbe8dcSKarl Rupp if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0]*xx[col]; 130326fbe8dcSKarl Rupp if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i]; 130456777dd2SBarry Smith } 130556777dd2SBarry Smith } 130656777dd2SBarry Smith } 130726fbe8dcSKarl Rupp for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]]; 130856777dd2SBarry Smith } 130956777dd2SBarry Smith 13103bededecSBarry Smith for (i=0; i<A->rmap->N; i++) { 13113bededecSBarry Smith if (!zeroed[i]) { 13123bededecSBarry Smith row = i/bs; 13133bededecSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 13143bededecSBarry Smith for (k=0; k<bs; k++) { 13153bededecSBarry Smith col = bs*baij->j[j] + k; 13163bededecSBarry Smith if (zeroed[col]) { 13173bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 13183bededecSBarry Smith aa[0] = 0.0; 13193bededecSBarry Smith } 13203bededecSBarry Smith } 13213bededecSBarry Smith } 13223bededecSBarry Smith } 13233bededecSBarry Smith } 13243bededecSBarry Smith ierr = PetscFree(zeroed);CHKERRQ(ierr); 132556777dd2SBarry Smith if (vecs) { 132656777dd2SBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 132756777dd2SBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 132856777dd2SBarry Smith } 13293bededecSBarry Smith 13303bededecSBarry Smith /* zero the rows */ 13313bededecSBarry Smith for (i=0; i<is_n; i++) { 13323bededecSBarry Smith row = is_idx[i]; 13333bededecSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 13343bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 13353bededecSBarry Smith for (k=0; k<count; k++) { 13363bededecSBarry Smith aa[0] = zero; 13373bededecSBarry Smith aa += bs; 13383bededecSBarry Smith } 13393bededecSBarry Smith if (diag != 0.0) { 13403bededecSBarry Smith ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 13413bededecSBarry Smith } 13423bededecSBarry Smith } 13433bededecSBarry Smith ierr = MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13443bededecSBarry Smith PetscFunctionReturn(0); 13453bededecSBarry Smith } 13463bededecSBarry Smith 134749b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 13483964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 134949b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 135049b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 135149b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 135297304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N, 1353431c96f7SBarry Smith MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */ 1354e005ede5SBarry Smith MatMultAdd_SeqSBAIJ_N, 1355db4efbfdSBarry Smith 0, 135649b5e25fSSatish Balay 0, 135749b5e25fSSatish Balay 0, 135897304618SKris Buschelman /* 10*/ 0, 135949b5e25fSSatish Balay 0, 1360c078aec8SLisandro Dalcin MatCholeskyFactor_SeqSBAIJ, 136141f059aeSBarry Smith MatSOR_SeqSBAIJ, 136249b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 136397304618SKris Buschelman /* 15*/ MatGetInfo_SeqSBAIJ, 136449b5e25fSSatish Balay MatEqual_SeqSBAIJ, 136549b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 136649b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 136749b5e25fSSatish Balay MatNorm_SeqSBAIJ, 136897304618SKris Buschelman /* 20*/ 0, 136949b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 137049b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 137149b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 1372d519adbfSMatthew Knepley /* 24*/ 0, 137349b5e25fSSatish Balay 0, 137449b5e25fSSatish Balay 0, 1375db4efbfdSBarry Smith 0, 1376db4efbfdSBarry Smith 0, 13774994cf47SJed Brown /* 29*/ MatSetUp_SeqSBAIJ, 1378c464158bSHong Zhang 0, 1379db4efbfdSBarry Smith 0, 13808c778c55SBarry Smith 0, 13818c778c55SBarry Smith 0, 1382d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqSBAIJ, 1383719d5645SBarry Smith 0, 1384719d5645SBarry Smith 0, 138549b5e25fSSatish Balay 0, 1386c84f5b01SHong Zhang MatICCFactor_SeqSBAIJ, 1387d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqSBAIJ, 138849b5e25fSSatish Balay MatGetSubMatrices_SeqSBAIJ, 138949b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 139049b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 13913c896bc6SHong Zhang MatCopy_SeqSBAIJ, 1392d519adbfSMatthew Knepley /* 44*/ 0, 139349b5e25fSSatish Balay MatScale_SeqSBAIJ, 139449b5e25fSSatish Balay 0, 139549b5e25fSSatish Balay 0, 13963bededecSBarry Smith MatZeroRowsColumns_SeqSBAIJ, 1397f73d5cc4SBarry Smith /* 49*/ 0, 139849b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 139949b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 140049b5e25fSSatish Balay 0, 140149b5e25fSSatish Balay 0, 1402d519adbfSMatthew Knepley /* 54*/ 0, 140349b5e25fSSatish Balay 0, 140449b5e25fSSatish Balay 0, 140549b5e25fSSatish Balay 0, 140649b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 1407d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_SeqSBAIJ, 140849b5e25fSSatish Balay 0, 140949b5e25fSSatish Balay 0, 1410357abbc8SBarry Smith 0, 1411d959ec07SHong Zhang 0, 1412d519adbfSMatthew Knepley /* 64*/ 0, 1413d959ec07SHong Zhang 0, 1414d959ec07SHong Zhang 0, 1415d959ec07SHong Zhang 0, 1416d959ec07SHong Zhang 0, 1417d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqSBAIJ, 14183e0d88b5SBarry Smith 0, 14193e0d88b5SBarry Smith 0, 14203e0d88b5SBarry Smith 0, 14213e0d88b5SBarry Smith 0, 1422d519adbfSMatthew Knepley /* 74*/ 0, 14233e0d88b5SBarry Smith 0, 14243e0d88b5SBarry Smith 0, 14253e0d88b5SBarry Smith 0, 14263e0d88b5SBarry Smith 0, 1427d519adbfSMatthew Knepley /* 79*/ 0, 14283e0d88b5SBarry Smith 0, 14293e0d88b5SBarry Smith 0, 143097304618SKris Buschelman MatGetInertia_SeqSBAIJ, 14315bba2384SShri Abhyankar MatLoad_SeqSBAIJ, 1432d519adbfSMatthew Knepley /* 84*/ MatIsSymmetric_SeqSBAIJ, 1433865e5f61SKris Buschelman MatIsHermitian_SeqSBAIJ, 1434efcf0fc3SBarry Smith MatIsStructurallySymmetric_SeqSBAIJ, 1435865e5f61SKris Buschelman 0, 1436865e5f61SKris Buschelman 0, 1437d519adbfSMatthew Knepley /* 89*/ 0, 1438865e5f61SKris Buschelman 0, 1439865e5f61SKris Buschelman 0, 1440865e5f61SKris Buschelman 0, 1441865e5f61SKris Buschelman 0, 1442d519adbfSMatthew Knepley /* 94*/ 0, 1443865e5f61SKris Buschelman 0, 1444865e5f61SKris Buschelman 0, 144599cafbc1SBarry Smith 0, 144699cafbc1SBarry Smith 0, 1447d519adbfSMatthew Knepley /* 99*/ 0, 144899cafbc1SBarry Smith 0, 144999cafbc1SBarry Smith 0, 145099cafbc1SBarry Smith 0, 145199cafbc1SBarry Smith 0, 1452d519adbfSMatthew Knepley /*104*/ 0, 145399cafbc1SBarry Smith MatRealPart_SeqSBAIJ, 1454f5edf698SHong Zhang MatImaginaryPart_SeqSBAIJ, 1455f5edf698SHong Zhang MatGetRowUpperTriangular_SeqSBAIJ, 14562af78befSBarry Smith MatRestoreRowUpperTriangular_SeqSBAIJ, 1457d519adbfSMatthew Knepley /*109*/ 0, 14582af78befSBarry Smith 0, 14592af78befSBarry Smith 0, 14602af78befSBarry Smith 0, 1461547795f9SHong Zhang MatMissingDiagonal_SeqSBAIJ, 1462547795f9SHong Zhang /*114*/ 0, 1463547795f9SHong Zhang 0, 1464547795f9SHong Zhang 0, 1465547795f9SHong Zhang 0, 1466547795f9SHong Zhang 0, 1467547795f9SHong Zhang /*119*/ 0, 1468547795f9SHong Zhang 0, 14692f480046SShri Abhyankar 0, 14703964eb88SJed Brown 0, 14713964eb88SJed Brown 0, 14723964eb88SJed Brown /*124*/ 0, 14733964eb88SJed Brown 0, 14743964eb88SJed Brown 0, 14753964eb88SJed Brown 0, 14763964eb88SJed Brown 0, 14773964eb88SJed Brown /*129*/ 0, 14783964eb88SJed Brown 0, 14793964eb88SJed Brown 0, 14803964eb88SJed Brown 0, 14813964eb88SJed Brown 0, 14823964eb88SJed Brown /*134*/ 0, 14833964eb88SJed Brown 0, 14843964eb88SJed Brown 0, 14853964eb88SJed Brown 0, 14863964eb88SJed Brown 0, 14873964eb88SJed Brown /*139*/ 0, 1488f9426fe0SMark Adams 0, 148959f5e6ceSHong Zhang 0, 149059f5e6ceSHong Zhang 0, 149159f5e6ceSHong Zhang 0, 149259f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ 149399cafbc1SBarry Smith }; 1494be1d678aSKris Buschelman 14954a2ae208SSatish Balay #undef __FUNCT__ 14964a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ" 14977087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat) 149849b5e25fSSatish Balay { 14994afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 1500d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 1501dfbe8321SBarry Smith PetscErrorCode ierr; 150249b5e25fSSatish Balay 150349b5e25fSSatish Balay PetscFunctionBegin; 1504e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 150549b5e25fSSatish Balay 150649b5e25fSSatish Balay /* allocate space for values if not already there */ 150749b5e25fSSatish Balay if (!aij->saved_values) { 1508854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr); 150949b5e25fSSatish Balay } 151049b5e25fSSatish Balay 151149b5e25fSSatish Balay /* copy values over */ 151287828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 151349b5e25fSSatish Balay PetscFunctionReturn(0); 151449b5e25fSSatish Balay } 151549b5e25fSSatish Balay 15164a2ae208SSatish Balay #undef __FUNCT__ 15174a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ" 15187087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat) 151949b5e25fSSatish Balay { 15204afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 15216849ba73SBarry Smith PetscErrorCode ierr; 1522d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 152349b5e25fSSatish Balay 152449b5e25fSSatish Balay PetscFunctionBegin; 1525e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1526e7e72b3dSBarry Smith if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 152749b5e25fSSatish Balay 152849b5e25fSSatish Balay /* copy values over */ 152987828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 153049b5e25fSSatish Balay PetscFunctionReturn(0); 153149b5e25fSSatish Balay } 153249b5e25fSSatish Balay 15334a2ae208SSatish Balay #undef __FUNCT__ 1534a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ" 15357087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 153649b5e25fSSatish Balay { 1537c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 15386849ba73SBarry Smith PetscErrorCode ierr; 15394dcd73b1SHong Zhang PetscInt i,mbs,nbs,bs2; 15402576faa2SJed Brown PetscBool skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE; 154149b5e25fSSatish Balay 154249b5e25fSSatish Balay PetscFunctionBegin; 15432576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 1544273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1545db4efbfdSBarry Smith 154633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 154726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 154826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1549e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1550899cda47SBarry Smith 1551d0f46423SBarry Smith mbs = B->rmap->N/bs; 15524dcd73b1SHong Zhang nbs = B->cmap->n/bs; 155349b5e25fSSatish Balay bs2 = bs*bs; 155449b5e25fSSatish Balay 15554dcd73b1SHong Zhang if (mbs*bs != B->rmap->N || nbs*bs!=B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 155649b5e25fSSatish Balay 1557ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 1558ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 1559ab93d7beSBarry Smith nz = 0; 1560ab93d7beSBarry Smith } 1561ab93d7beSBarry Smith 1562435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 1563e32f2f54SBarry Smith if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 156449b5e25fSSatish Balay if (nnz) { 156549b5e25fSSatish Balay for (i=0; i<mbs; i++) { 1566e32f2f54SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 1567de64b629SHong Zhang if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D block rowlength %D",i,nnz[i],nbs); 156849b5e25fSSatish Balay } 156949b5e25fSSatish Balay } 157049b5e25fSSatish Balay 1571db4efbfdSBarry Smith B->ops->mult = MatMult_SeqSBAIJ_N; 1572db4efbfdSBarry Smith B->ops->multadd = MatMultAdd_SeqSBAIJ_N; 1573db4efbfdSBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_N; 1574db4efbfdSBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N; 157526fbe8dcSKarl Rupp 15760298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 157749b5e25fSSatish Balay if (!flg) { 157849b5e25fSSatish Balay switch (bs) { 157949b5e25fSSatish Balay case 1: 158049b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 158149b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 1582431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_1; 1583431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1; 158449b5e25fSSatish Balay break; 158549b5e25fSSatish Balay case 2: 158649b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 158749b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 1588431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_2; 1589431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2; 159049b5e25fSSatish Balay break; 159149b5e25fSSatish Balay case 3: 159249b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 159349b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 1594431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_3; 1595431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3; 159649b5e25fSSatish Balay break; 159749b5e25fSSatish Balay case 4: 159849b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 159949b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 1600431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_4; 1601431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4; 160249b5e25fSSatish Balay break; 160349b5e25fSSatish Balay case 5: 160449b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 160549b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 1606431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_5; 1607431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5; 160849b5e25fSSatish Balay break; 160949b5e25fSSatish Balay case 6: 161049b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 161149b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 1612431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_6; 1613431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6; 161449b5e25fSSatish Balay break; 161549b5e25fSSatish Balay case 7: 1616de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 161749b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 1618431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_7; 1619431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7; 162049b5e25fSSatish Balay break; 162149b5e25fSSatish Balay } 162249b5e25fSSatish Balay } 162349b5e25fSSatish Balay 162449b5e25fSSatish Balay b->mbs = mbs; 16254dcd73b1SHong Zhang b->nbs = nbs; 1626ab93d7beSBarry Smith if (!skipallocation) { 16272ee49352SLisandro Dalcin if (!b->imax) { 1628dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr); 162926fbe8dcSKarl Rupp 1630c760cd28SBarry Smith b->free_imax_ilen = PETSC_TRUE; 163126fbe8dcSKarl Rupp 16323bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr); 16332ee49352SLisandro Dalcin } 163449b5e25fSSatish Balay if (!nnz) { 1635435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 163649b5e25fSSatish Balay else if (nz <= 0) nz = 1; 163726fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->imax[i] = nz; 1638153ea458SHong Zhang nz = nz*mbs; /* total nz */ 163949b5e25fSSatish Balay } else { 164049b5e25fSSatish Balay nz = 0; 16418cef66ccSHong Zhang for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 164249b5e25fSSatish Balay } 16432ee49352SLisandro Dalcin /* b->ilen will count nonzeros in each block row so far. */ 164426fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 16456c6c5352SBarry Smith /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 164649b5e25fSSatish Balay 164749b5e25fSSatish Balay /* allocate the matrix space */ 16482ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 1649dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr); 16503bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 16516c6c5352SBarry Smith ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 165213f74950SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 165326fbe8dcSKarl Rupp 165449b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 165549b5e25fSSatish Balay 165649b5e25fSSatish Balay /* pointer to beginning of each row */ 1657e60cf9a0SBarry Smith b->i[0] = 0; 165826fbe8dcSKarl Rupp for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1]; 165926fbe8dcSKarl Rupp 1660e6b907acSBarry Smith b->free_a = PETSC_TRUE; 1661e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 1662e811da20SHong Zhang } else { 1663e6b907acSBarry Smith b->free_a = PETSC_FALSE; 1664e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 1665ab93d7beSBarry Smith } 166649b5e25fSSatish Balay 1667d0f46423SBarry Smith B->rmap->bs = bs; 166849b5e25fSSatish Balay b->bs2 = bs2; 16696c6c5352SBarry Smith b->nz = 0; 1670b32cb4a7SJed Brown b->maxnz = nz; 1671153ea458SHong Zhang 167216cdd363SHong Zhang b->inew = 0; 167316cdd363SHong Zhang b->jnew = 0; 167416cdd363SHong Zhang b->anew = 0; 167516cdd363SHong Zhang b->a2anew = 0; 16761a3463dfSHong Zhang b->permute = PETSC_FALSE; 16772576faa2SJed Brown if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);} 1678c464158bSHong Zhang PetscFunctionReturn(0); 1679c464158bSHong Zhang } 1680153ea458SHong Zhang 168138f409ebSLisandro Dalcin #undef __FUNCT__ 168238f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ" 168338f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[]) 168438f409ebSLisandro Dalcin { 168538f409ebSLisandro Dalcin PetscInt i,j,m,nz,nz_max=0,*nnz; 168638f409ebSLisandro Dalcin PetscScalar *values=0; 168738f409ebSLisandro Dalcin PetscBool roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented; 168838f409ebSLisandro Dalcin PetscErrorCode ierr; 168938f409ebSLisandro Dalcin PetscFunctionBegin; 169038f409ebSLisandro Dalcin if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 169138f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 169238f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 169338f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 169438f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 169538f409ebSLisandro Dalcin ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 169638f409ebSLisandro Dalcin m = B->rmap->n/bs; 169738f409ebSLisandro Dalcin 169838f409ebSLisandro Dalcin if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1699854ce69bSBarry Smith ierr = PetscMalloc1(m+1,&nnz);CHKERRQ(ierr); 170038f409ebSLisandro Dalcin for (i=0; i<m; i++) { 170138f409ebSLisandro Dalcin nz = ii[i+1] - ii[i]; 170238f409ebSLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D has a negative number of columns %D",i,nz); 170338f409ebSLisandro Dalcin nz_max = PetscMax(nz_max,nz); 170438f409ebSLisandro Dalcin nnz[i] = nz; 170538f409ebSLisandro Dalcin } 170638f409ebSLisandro Dalcin ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 170738f409ebSLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 170838f409ebSLisandro Dalcin 170938f409ebSLisandro Dalcin values = (PetscScalar*)V; 171038f409ebSLisandro Dalcin if (!values) { 17111795a4d1SJed Brown ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 171238f409ebSLisandro Dalcin } 171338f409ebSLisandro Dalcin for (i=0; i<m; i++) { 171438f409ebSLisandro Dalcin PetscInt ncols = ii[i+1] - ii[i]; 171538f409ebSLisandro Dalcin const PetscInt *icols = jj + ii[i]; 171638f409ebSLisandro Dalcin if (!roworiented || bs == 1) { 171738f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 171838f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 171938f409ebSLisandro Dalcin } else { 172038f409ebSLisandro Dalcin for (j=0; j<ncols; j++) { 172138f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 172238f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 172338f409ebSLisandro Dalcin } 172438f409ebSLisandro Dalcin } 172538f409ebSLisandro Dalcin } 172638f409ebSLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 172738f409ebSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 172838f409ebSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 172938f409ebSLisandro Dalcin ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 173038f409ebSLisandro Dalcin PetscFunctionReturn(0); 173138f409ebSLisandro Dalcin } 173238f409ebSLisandro Dalcin 1733db4efbfdSBarry Smith /* 1734db4efbfdSBarry Smith This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization 1735db4efbfdSBarry Smith */ 17368b1456e3SHong Zhang #undef __FUNCT__ 1737d595f711SHong Zhang #define __FUNCT__ "MatSeqSBAIJSetNumericFactorization_inplace" 1738ace3abfcSBarry Smith PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural) 1739db4efbfdSBarry Smith { 1740db4efbfdSBarry Smith PetscErrorCode ierr; 1741ace3abfcSBarry Smith PetscBool flg = PETSC_FALSE; 1742db4efbfdSBarry Smith PetscInt bs = B->rmap->bs; 1743db4efbfdSBarry Smith 1744db4efbfdSBarry Smith PetscFunctionBegin; 17450298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 1746db4efbfdSBarry Smith if (flg) bs = 8; 1747db4efbfdSBarry Smith 1748db4efbfdSBarry Smith if (!natural) { 1749db4efbfdSBarry Smith switch (bs) { 1750db4efbfdSBarry Smith case 1: 1751d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace; 1752db4efbfdSBarry Smith break; 1753db4efbfdSBarry Smith case 2: 1754db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 1755db4efbfdSBarry Smith break; 1756db4efbfdSBarry Smith case 3: 1757db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 1758db4efbfdSBarry Smith break; 1759db4efbfdSBarry Smith case 4: 1760db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 1761db4efbfdSBarry Smith break; 1762db4efbfdSBarry Smith case 5: 1763db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 1764db4efbfdSBarry Smith break; 1765db4efbfdSBarry Smith case 6: 1766db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 1767db4efbfdSBarry Smith break; 1768db4efbfdSBarry Smith case 7: 1769db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 1770db4efbfdSBarry Smith break; 1771db4efbfdSBarry Smith default: 1772db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N; 1773db4efbfdSBarry Smith break; 1774db4efbfdSBarry Smith } 1775db4efbfdSBarry Smith } else { 1776db4efbfdSBarry Smith switch (bs) { 1777db4efbfdSBarry Smith case 1: 1778d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace; 1779db4efbfdSBarry Smith break; 1780db4efbfdSBarry Smith case 2: 1781db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 1782db4efbfdSBarry Smith break; 1783db4efbfdSBarry Smith case 3: 1784db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 1785db4efbfdSBarry Smith break; 1786db4efbfdSBarry Smith case 4: 1787db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 1788db4efbfdSBarry Smith break; 1789db4efbfdSBarry Smith case 5: 1790db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 1791db4efbfdSBarry Smith break; 1792db4efbfdSBarry Smith case 6: 1793db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 1794db4efbfdSBarry Smith break; 1795db4efbfdSBarry Smith case 7: 1796db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 1797db4efbfdSBarry Smith break; 1798db4efbfdSBarry Smith default: 1799db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering; 1800db4efbfdSBarry Smith break; 1801db4efbfdSBarry Smith } 1802db4efbfdSBarry Smith } 1803db4efbfdSBarry Smith PetscFunctionReturn(0); 1804db4efbfdSBarry Smith } 1805db4efbfdSBarry Smith 18068cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 18078cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType,MatReuse,Mat*); 1808d769727bSBarry Smith 18095c9eb25fSBarry Smith #undef __FUNCT__ 18105c9eb25fSBarry Smith #define __FUNCT__ "MatGetFactor_seqsbaij_petsc" 18118cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B) 18125c9eb25fSBarry Smith { 1813d0f46423SBarry Smith PetscInt n = A->rmap->n; 18145c9eb25fSBarry Smith PetscErrorCode ierr; 18155c9eb25fSBarry Smith 18165c9eb25fSBarry Smith PetscFunctionBegin; 18170e92d65fSHong Zhang #if defined(PETSC_USE_COMPLEX) 18180e92d65fSHong Zhang if (A->hermitian) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian Factor is not supported"); 18190e92d65fSHong Zhang #endif 1820ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 18215c9eb25fSBarry Smith ierr = MatSetSizes(*B,n,n,n,n);CHKERRQ(ierr); 18225c9eb25fSBarry Smith if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 18235c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQSBAIJ);CHKERRQ(ierr); 18240298fd71SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL);CHKERRQ(ierr); 182526fbe8dcSKarl Rupp 18267b056e98SHong Zhang (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ; 1827c6d0d4f0SHong Zhang (*B)->ops->iccfactorsymbolic = MatICCFactorSymbolic_SeqSBAIJ; 1828e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported"); 1829d5f3da31SBarry Smith (*B)->factortype = ftype; 18305c9eb25fSBarry Smith PetscFunctionReturn(0); 18315c9eb25fSBarry Smith } 18325c9eb25fSBarry Smith 18330bad9183SKris Buschelman /*MC 1834fafad747SKris Buschelman MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices, 18350bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 18360bad9183SKris Buschelman 1837828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 183871dad5bbSBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); after MatAssemblyEnd() 1839828413b8SBarry Smith 18400bad9183SKris Buschelman Options Database Keys: 18410bad9183SKris Buschelman . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions() 18420bad9183SKris Buschelman 184371dad5bbSBarry Smith Notes: By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not 184471dad5bbSBarry Smith stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use 184571dad5bbSBarry Smith the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion. 184671dad5bbSBarry Smith 184771dad5bbSBarry Smith 18480bad9183SKris Buschelman Level: beginner 18490bad9183SKris Buschelman 18500bad9183SKris Buschelman .seealso: MatCreateSeqSBAIJ 18510bad9183SKris Buschelman M*/ 18520bad9183SKris Buschelman 18538cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqSBSTRM(Mat, MatType,MatReuse,Mat*); 1854aa5a9175SDahai Guo 1855a23d5eceSKris Buschelman #undef __FUNCT__ 1856a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ" 18578cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B) 1858a23d5eceSKris Buschelman { 1859a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 1860dfbe8321SBarry Smith PetscErrorCode ierr; 186113f74950SBarry Smith PetscMPIInt size; 1862ace3abfcSBarry Smith PetscBool no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE; 1863a23d5eceSKris Buschelman 1864a23d5eceSKris Buschelman PetscFunctionBegin; 1865ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1866e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1867a23d5eceSKris Buschelman 1868b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1869a23d5eceSKris Buschelman B->data = (void*)b; 1870a23d5eceSKris Buschelman ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 187126fbe8dcSKarl Rupp 1872a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1873a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1874a23d5eceSKris Buschelman b->row = 0; 1875a23d5eceSKris Buschelman b->icol = 0; 1876a23d5eceSKris Buschelman b->reallocs = 0; 1877a23d5eceSKris Buschelman b->saved_values = 0; 18780def2e27SBarry Smith b->inode.limit = 5; 18790def2e27SBarry Smith b->inode.max_limit = 5; 1880a23d5eceSKris Buschelman 1881a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1882a23d5eceSKris Buschelman b->nonew = 0; 1883a23d5eceSKris Buschelman b->diag = 0; 1884a23d5eceSKris Buschelman b->solve_work = 0; 1885a23d5eceSKris Buschelman b->mult_work = 0; 1886a23d5eceSKris Buschelman B->spptr = 0; 1887f2cbd3d5SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 1888a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 1889a23d5eceSKris Buschelman 1890a23d5eceSKris Buschelman b->inew = 0; 1891a23d5eceSKris Buschelman b->jnew = 0; 1892a23d5eceSKris Buschelman b->anew = 0; 1893a23d5eceSKris Buschelman b->a2anew = 0; 1894a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1895a23d5eceSKris Buschelman 189671dad5bbSBarry Smith b->ignore_ltriangular = PETSC_TRUE; 189726fbe8dcSKarl Rupp 18980298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL);CHKERRQ(ierr); 1899941593c8SHong Zhang 1900f5edf698SHong Zhang b->getrow_utriangular = PETSC_FALSE; 190126fbe8dcSKarl Rupp 19020298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL);CHKERRQ(ierr); 1903f5edf698SHong Zhang 1904bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ);CHKERRQ(ierr); 1905bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr); 1906bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr); 1907bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr); 1908bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr); 1909bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr); 191038f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ);CHKERRQ(ierr); 1911bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqsbstrm_C",MatConvert_SeqSBAIJ_SeqSBSTRM);CHKERRQ(ierr); 1912*6214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1913*6214f412SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_elemental_C",MatConvert_SeqSBAIJ_Elemental);CHKERRQ(ierr); 1914*6214f412SHong Zhang #endif 191523ce1328SBarry Smith 191623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 191723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 191823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 191923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 192026fbe8dcSKarl Rupp 192117667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ);CHKERRQ(ierr); 19220def2e27SBarry Smith 1923ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat");CHKERRQ(ierr); 19240298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL);CHKERRQ(ierr); 192526fbe8dcSKarl Rupp if (no_unroll) { 192626fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n");CHKERRQ(ierr); 192726fbe8dcSKarl Rupp } 19280298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL);CHKERRQ(ierr); 192926fbe8dcSKarl Rupp if (no_inode) { 193026fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n");CHKERRQ(ierr); 193126fbe8dcSKarl Rupp } 19320298fd71SBarry Smith ierr = PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL);CHKERRQ(ierr); 19330def2e27SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1934ace3abfcSBarry Smith b->inode.use = (PetscBool)(!(no_unroll || no_inode)); 19350def2e27SBarry Smith if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit; 1936a23d5eceSKris Buschelman PetscFunctionReturn(0); 1937a23d5eceSKris Buschelman } 1938a23d5eceSKris Buschelman 1939a23d5eceSKris Buschelman #undef __FUNCT__ 1940a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation" 1941a23d5eceSKris Buschelman /*@C 1942a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 1943a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 1944a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 1945a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 1946a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 1947a23d5eceSKris Buschelman 1948a23d5eceSKris Buschelman Collective on Mat 1949a23d5eceSKris Buschelman 1950a23d5eceSKris Buschelman Input Parameters: 19511c4f3114SJed Brown + B - the symmetric matrix 1952bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1953bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1954a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 1955a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 19560298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 1957a23d5eceSKris Buschelman 1958a23d5eceSKris Buschelman Options Database Keys: 1959a23d5eceSKris Buschelman . -mat_no_unroll - uses code that does not unroll the loops in the 1960a23d5eceSKris Buschelman block calculations (much slower) 1961db4efbfdSBarry Smith . -mat_block_size - size of the blocks to use (only works if a negative bs is passed in 1962a23d5eceSKris Buschelman 1963a23d5eceSKris Buschelman Level: intermediate 1964a23d5eceSKris Buschelman 1965a23d5eceSKris Buschelman Notes: 1966a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 19670298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1968a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 1969a23d5eceSKris Buschelman 1970aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1971aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1972aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1973aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1974aa95bbe8SBarry Smith 197549a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 197649a6f317SBarry Smith 197749a6f317SBarry Smith 197869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 1979a23d5eceSKris Buschelman @*/ 19807087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 198113f74950SBarry Smith { 19824ac538c5SBarry Smith PetscErrorCode ierr; 1983a23d5eceSKris Buschelman 1984a23d5eceSKris Buschelman PetscFunctionBegin; 19856ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19866ba663aaSJed Brown PetscValidType(B,1); 19876ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19884ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr); 1989a23d5eceSKris Buschelman PetscFunctionReturn(0); 1990a23d5eceSKris Buschelman } 199149b5e25fSSatish Balay 19924a2ae208SSatish Balay #undef __FUNCT__ 199338f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR" 199438f409ebSLisandro Dalcin /*@C 199538f409ebSLisandro Dalcin MatSeqSBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in symmetric block AIJ format. 199638f409ebSLisandro Dalcin 199738f409ebSLisandro Dalcin Input Parameters: 19981c4f3114SJed Brown + B - the matrix 199938f409ebSLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 200038f409ebSLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 200138f409ebSLisandro Dalcin - v - optional values in the matrix 200238f409ebSLisandro Dalcin 200338f409ebSLisandro Dalcin Level: developer 200438f409ebSLisandro Dalcin 200538f409ebSLisandro Dalcin Notes: 200638f409ebSLisandro Dalcin The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 200738f409ebSLisandro Dalcin may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 200838f409ebSLisandro Dalcin over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 200938f409ebSLisandro Dalcin MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 201038f409ebSLisandro Dalcin block column and the second index is over columns within a block. 201138f409ebSLisandro Dalcin 201238f409ebSLisandro Dalcin .keywords: matrix, block, aij, compressed row, sparse 201338f409ebSLisandro Dalcin 201438f409ebSLisandro Dalcin .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValuesBlocked(), MatSeqSBAIJSetPreallocation(), MATSEQSBAIJ 201538f409ebSLisandro Dalcin @*/ 201638f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 201738f409ebSLisandro Dalcin { 201838f409ebSLisandro Dalcin PetscErrorCode ierr; 201938f409ebSLisandro Dalcin 202038f409ebSLisandro Dalcin PetscFunctionBegin; 202138f409ebSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_CLASSID,1); 202238f409ebSLisandro Dalcin PetscValidType(B,1); 202338f409ebSLisandro Dalcin PetscValidLogicalCollectiveInt(B,bs,2); 202438f409ebSLisandro Dalcin ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 202538f409ebSLisandro Dalcin PetscFunctionReturn(0); 202638f409ebSLisandro Dalcin } 202738f409ebSLisandro Dalcin 202838f409ebSLisandro Dalcin #undef __FUNCT__ 20294a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ" 2030c464158bSHong Zhang /*@C 2031c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 2032c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 2033c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 2034c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 2035c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 203649b5e25fSSatish Balay 2037c464158bSHong Zhang Collective on MPI_Comm 2038c464158bSHong Zhang 2039c464158bSHong Zhang Input Parameters: 2040c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2041bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2042bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2043c464158bSHong Zhang . m - number of rows, or number of columns 2044c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 2045744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 20460298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 2047c464158bSHong Zhang 2048c464158bSHong Zhang Output Parameter: 2049c464158bSHong Zhang . A - the symmetric matrix 2050c464158bSHong Zhang 2051c464158bSHong Zhang Options Database Keys: 2052c464158bSHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2053c464158bSHong Zhang block calculations (much slower) 2054c464158bSHong Zhang . -mat_block_size - size of the blocks to use 2055c464158bSHong Zhang 2056c464158bSHong Zhang Level: intermediate 2057c464158bSHong Zhang 2058175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2059ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2060175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2061175b88e8SBarry Smith 2062c464158bSHong Zhang Notes: 20636d6d819aSHong Zhang The number of rows and columns must be divisible by blocksize. 20646d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2065c464158bSHong Zhang 2066c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 20670298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 2068a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 2069c464158bSHong Zhang 207049a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 207149a6f317SBarry Smith 207269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 2073c464158bSHong Zhang @*/ 20747087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 2075c464158bSHong Zhang { 2076dfbe8321SBarry Smith PetscErrorCode ierr; 2077c464158bSHong Zhang 2078c464158bSHong Zhang PetscFunctionBegin; 2079f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2080f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2081c464158bSHong Zhang ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2082ab93d7beSBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 208349b5e25fSSatish Balay PetscFunctionReturn(0); 208449b5e25fSSatish Balay } 208549b5e25fSSatish Balay 20864a2ae208SSatish Balay #undef __FUNCT__ 20874a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ" 2088dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 208949b5e25fSSatish Balay { 209049b5e25fSSatish Balay Mat C; 209149b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 20926849ba73SBarry Smith PetscErrorCode ierr; 2093b40805acSSatish Balay PetscInt i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 209449b5e25fSSatish Balay 209549b5e25fSSatish Balay PetscFunctionBegin; 2096e32f2f54SBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 209749b5e25fSSatish Balay 209849b5e25fSSatish Balay *B = 0; 2099ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr); 2100d0f46423SBarry Smith ierr = MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 21018e9a0fb8SHong Zhang ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr); 21021d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2103692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 2104692f9cbeSHong Zhang 2105273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2106d5f3da31SBarry Smith C->factortype = A->factortype; 210749b5e25fSSatish Balay c->row = 0; 210849b5e25fSSatish Balay c->icol = 0; 210949b5e25fSSatish Balay c->saved_values = 0; 2110a9817697SBarry Smith c->keepnonzeropattern = a->keepnonzeropattern; 211149b5e25fSSatish Balay C->assembled = PETSC_TRUE; 211249b5e25fSSatish Balay 21131e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 21141e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 211549b5e25fSSatish Balay c->bs2 = a->bs2; 211649b5e25fSSatish Balay c->mbs = a->mbs; 211749b5e25fSSatish Balay c->nbs = a->nbs; 211849b5e25fSSatish Balay 2119c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2120c760cd28SBarry Smith c->imax = a->imax; 2121c760cd28SBarry Smith c->ilen = a->ilen; 2122c760cd28SBarry Smith c->free_imax_ilen = PETSC_FALSE; 2123c760cd28SBarry Smith } else { 2124dcca6d9dSJed Brown ierr = PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen);CHKERRQ(ierr); 21253bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 212649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 212749b5e25fSSatish Balay c->imax[i] = a->imax[i]; 212849b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 212949b5e25fSSatish Balay } 2130c760cd28SBarry Smith c->free_imax_ilen = PETSC_TRUE; 2131c760cd28SBarry Smith } 213249b5e25fSSatish Balay 213349b5e25fSSatish Balay /* allocate the matrix space */ 21344da8f245SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2135785e854fSJed Brown ierr = PetscMalloc1(bs2*nz,&c->a);CHKERRQ(ierr); 21363bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 213744e1c64aSLisandro Dalcin c->i = a->i; 213844e1c64aSLisandro Dalcin c->j = a->j; 21394da8f245SBarry Smith c->singlemalloc = PETSC_FALSE; 214044e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21414da8f245SBarry Smith c->free_ij = PETSC_FALSE; 21424da8f245SBarry Smith c->parent = A; 21434da8f245SBarry Smith ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); 21444da8f245SBarry Smith ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21454da8f245SBarry Smith ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21464da8f245SBarry Smith } else { 2147dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr); 214813f74950SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 21493bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));CHKERRQ(ierr); 21504da8f245SBarry Smith c->singlemalloc = PETSC_TRUE; 215144e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21524da8f245SBarry Smith c->free_ij = PETSC_TRUE; 21534da8f245SBarry Smith } 215449b5e25fSSatish Balay if (mbs > 0) { 21554da8f245SBarry Smith if (cpvalues != MAT_SHARE_NONZERO_PATTERN) { 215613f74950SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 21574da8f245SBarry Smith } 215849b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 215949b5e25fSSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 216049b5e25fSSatish Balay } else { 216149b5e25fSSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 216249b5e25fSSatish Balay } 2163a1c3900fSBarry Smith if (a->jshort) { 216444e1c64aSLisandro Dalcin /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */ 216544e1c64aSLisandro Dalcin /* if the parent matrix is reassembled, this child matrix will never notice */ 2166785e854fSJed Brown ierr = PetscMalloc1(nz,&c->jshort);CHKERRQ(ierr); 21673bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short));CHKERRQ(ierr); 2168a1c3900fSBarry Smith ierr = PetscMemcpy(c->jshort,a->jshort,nz*sizeof(unsigned short));CHKERRQ(ierr); 216926fbe8dcSKarl Rupp 21704da8f245SBarry Smith c->free_jshort = PETSC_TRUE; 21714da8f245SBarry Smith } 2172a1c3900fSBarry Smith } 217349b5e25fSSatish Balay 217449b5e25fSSatish Balay c->roworiented = a->roworiented; 217549b5e25fSSatish Balay c->nonew = a->nonew; 217649b5e25fSSatish Balay 217749b5e25fSSatish Balay if (a->diag) { 2178c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2179c760cd28SBarry Smith c->diag = a->diag; 2180c760cd28SBarry Smith c->free_diag = PETSC_FALSE; 2181c760cd28SBarry Smith } else { 2182785e854fSJed Brown ierr = PetscMalloc1(mbs,&c->diag);CHKERRQ(ierr); 21833bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt));CHKERRQ(ierr); 218426fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 2185c760cd28SBarry Smith c->free_diag = PETSC_TRUE; 2186c760cd28SBarry Smith } 218744e1c64aSLisandro Dalcin } 21886c6c5352SBarry Smith c->nz = a->nz; 2189f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 219049b5e25fSSatish Balay c->solve_work = 0; 219149b5e25fSSatish Balay c->mult_work = 0; 219226fbe8dcSKarl Rupp 219349b5e25fSSatish Balay *B = C; 2194140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 219549b5e25fSSatish Balay PetscFunctionReturn(0); 219649b5e25fSSatish Balay } 219749b5e25fSSatish Balay 21984a2ae208SSatish Balay #undef __FUNCT__ 21995bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqSBAIJ" 2200112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqSBAIJ(Mat newmat,PetscViewer viewer) 22012f480046SShri Abhyankar { 22022f480046SShri Abhyankar Mat_SeqSBAIJ *a; 22032f480046SShri Abhyankar PetscErrorCode ierr; 22042f480046SShri Abhyankar int fd; 22052f480046SShri Abhyankar PetscMPIInt size; 22063059b6faSBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs; 22072f480046SShri Abhyankar PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount; 22082f480046SShri Abhyankar PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols; 22092f480046SShri Abhyankar PetscInt *masked,nmask,tmp,bs2,ishift; 22102f480046SShri Abhyankar PetscScalar *aa; 2211ce94432eSBarry Smith MPI_Comm comm; 22122f480046SShri Abhyankar 22132f480046SShri Abhyankar PetscFunctionBegin; 2214ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22150298fd71SBarry Smith ierr = PetscOptionsGetInt(((PetscObject)newmat)->prefix,"-matload_block_size",&bs,NULL);CHKERRQ(ierr); 22163059b6faSBarry Smith if (bs < 0) bs = 1; 22172f480046SShri Abhyankar bs2 = bs*bs; 22182f480046SShri Abhyankar 22192f480046SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 22202f480046SShri Abhyankar if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor"); 22212f480046SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 22222f480046SShri Abhyankar ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 22232f480046SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 22242f480046SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 22252f480046SShri Abhyankar 22262f480046SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ"); 22272f480046SShri Abhyankar 22282f480046SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 22292f480046SShri Abhyankar 22302f480046SShri Abhyankar /* 22312f480046SShri Abhyankar This code adds extra rows to make sure the number of rows is 22322f480046SShri Abhyankar divisible by the blocksize 22332f480046SShri Abhyankar */ 22342f480046SShri Abhyankar mbs = M/bs; 22352f480046SShri Abhyankar extra_rows = bs - M + bs*(mbs); 22362f480046SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 22372f480046SShri Abhyankar else mbs++; 22382f480046SShri Abhyankar if (extra_rows) { 22392f480046SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 22402f480046SShri Abhyankar } 22412f480046SShri Abhyankar 22422f480046SShri Abhyankar /* Set global sizes if not already set */ 22432f480046SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) { 22442f480046SShri Abhyankar ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 22452f480046SShri Abhyankar } else { /* Check if the matrix global sizes are correct */ 22462f480046SShri Abhyankar ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr); 22472f480046SShri Abhyankar if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols); 22482f480046SShri Abhyankar } 22492f480046SShri Abhyankar 22502f480046SShri Abhyankar /* read in row lengths */ 2251854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 22522f480046SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 22532f480046SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 22542f480046SShri Abhyankar 22552f480046SShri Abhyankar /* read in column indices */ 2256854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr); 22572f480046SShri Abhyankar ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 22582f480046SShri Abhyankar for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 22592f480046SShri Abhyankar 22602f480046SShri Abhyankar /* loop over row lengths determining block row lengths */ 22611795a4d1SJed Brown ierr = PetscCalloc1(mbs,&s_browlengths);CHKERRQ(ierr); 2262dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr); 22632f480046SShri Abhyankar ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 22642f480046SShri Abhyankar rowcount = 0; 22652f480046SShri Abhyankar nzcount = 0; 22662f480046SShri Abhyankar for (i=0; i<mbs; i++) { 22672f480046SShri Abhyankar nmask = 0; 22682f480046SShri Abhyankar for (j=0; j<bs; j++) { 22692f480046SShri Abhyankar kmax = rowlengths[rowcount]; 22702f480046SShri Abhyankar for (k=0; k<kmax; k++) { 22712f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 22722f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;} 22732f480046SShri Abhyankar } 22742f480046SShri Abhyankar rowcount++; 22752f480046SShri Abhyankar } 22762f480046SShri Abhyankar s_browlengths[i] += nmask; 22772f480046SShri Abhyankar 22782f480046SShri Abhyankar /* zero out the mask elements we set */ 22792f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 22802f480046SShri Abhyankar } 22812f480046SShri Abhyankar 22822f480046SShri Abhyankar /* Do preallocation */ 22832f480046SShri Abhyankar ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(newmat,bs,0,s_browlengths);CHKERRQ(ierr); 22842f480046SShri Abhyankar a = (Mat_SeqSBAIJ*)newmat->data; 22852f480046SShri Abhyankar 22862f480046SShri Abhyankar /* set matrix "i" values */ 22872f480046SShri Abhyankar a->i[0] = 0; 22882f480046SShri Abhyankar for (i=1; i<= mbs; i++) { 22892f480046SShri Abhyankar a->i[i] = a->i[i-1] + s_browlengths[i-1]; 22902f480046SShri Abhyankar a->ilen[i-1] = s_browlengths[i-1]; 22912f480046SShri Abhyankar } 22922f480046SShri Abhyankar a->nz = a->i[mbs]; 22932f480046SShri Abhyankar 22942f480046SShri Abhyankar /* read in nonzero values */ 2295854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr); 22962f480046SShri Abhyankar ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 22972f480046SShri Abhyankar for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 22982f480046SShri Abhyankar 22992f480046SShri Abhyankar /* set "a" and "j" values into matrix */ 23002f480046SShri Abhyankar nzcount = 0; jcount = 0; 23012f480046SShri Abhyankar for (i=0; i<mbs; i++) { 23022f480046SShri Abhyankar nzcountb = nzcount; 23032f480046SShri Abhyankar nmask = 0; 23042f480046SShri Abhyankar for (j=0; j<bs; j++) { 23052f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23062f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23072f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 23082f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;} 23092f480046SShri Abhyankar } 23102f480046SShri Abhyankar } 23112f480046SShri Abhyankar /* sort the masked values */ 23122f480046SShri Abhyankar ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 23132f480046SShri Abhyankar 23142f480046SShri Abhyankar /* set "j" values into matrix */ 23152f480046SShri Abhyankar maskcount = 1; 23162f480046SShri Abhyankar for (j=0; j<nmask; j++) { 23172f480046SShri Abhyankar a->j[jcount++] = masked[j]; 23182f480046SShri Abhyankar mask[masked[j]] = maskcount++; 23192f480046SShri Abhyankar } 23202f480046SShri Abhyankar 23212f480046SShri Abhyankar /* set "a" values into matrix */ 23222f480046SShri Abhyankar ishift = bs2*a->i[i]; 23232f480046SShri Abhyankar for (j=0; j<bs; j++) { 23242f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23252f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23262f480046SShri Abhyankar tmp = jj[nzcountb]/bs; /* block col. index */ 23272f480046SShri Abhyankar if (tmp >= i) { 23282f480046SShri Abhyankar block = mask[tmp] - 1; 23292f480046SShri Abhyankar point = jj[nzcountb] - bs*tmp; 23302f480046SShri Abhyankar idx = ishift + bs2*block + j + bs*point; 23312f480046SShri Abhyankar a->a[idx] = aa[nzcountb]; 23322f480046SShri Abhyankar } 23332f480046SShri Abhyankar nzcountb++; 23342f480046SShri Abhyankar } 23352f480046SShri Abhyankar } 23362f480046SShri Abhyankar /* zero out the mask elements we set */ 23372f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 23382f480046SShri Abhyankar } 23392f480046SShri Abhyankar if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 23402f480046SShri Abhyankar 23412f480046SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 23422f480046SShri Abhyankar ierr = PetscFree(s_browlengths);CHKERRQ(ierr); 23432f480046SShri Abhyankar ierr = PetscFree(aa);CHKERRQ(ierr); 23442f480046SShri Abhyankar ierr = PetscFree(jj);CHKERRQ(ierr); 23452f480046SShri Abhyankar ierr = PetscFree2(mask,masked);CHKERRQ(ierr); 23462f480046SShri Abhyankar 23472f480046SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23482f480046SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23492f480046SShri Abhyankar PetscFunctionReturn(0); 23502f480046SShri Abhyankar } 23512f480046SShri Abhyankar 23522f480046SShri Abhyankar #undef __FUNCT__ 2353c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqSBAIJWithArrays" 2354c75a6043SHong Zhang /*@ 2355c75a6043SHong Zhang MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements 2356c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 2357c75a6043SHong Zhang 2358c75a6043SHong Zhang Collective on MPI_Comm 2359c75a6043SHong Zhang 2360c75a6043SHong Zhang Input Parameters: 2361c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 2362c75a6043SHong Zhang . bs - size of block 2363c75a6043SHong Zhang . m - number of rows 2364c75a6043SHong Zhang . n - number of columns 2365c75a6043SHong Zhang . i - row indices 2366c75a6043SHong Zhang . j - column indices 2367c75a6043SHong Zhang - a - matrix values 2368c75a6043SHong Zhang 2369c75a6043SHong Zhang Output Parameter: 2370c75a6043SHong Zhang . mat - the matrix 2371c75a6043SHong Zhang 2372dfb205c3SBarry Smith Level: advanced 2373c75a6043SHong Zhang 2374c75a6043SHong Zhang Notes: 2375c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 2376c75a6043SHong Zhang once the matrix is destroyed 2377c75a6043SHong Zhang 2378c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 2379c75a6043SHong Zhang 2380c75a6043SHong Zhang The i and j indices are 0 based 2381c75a6043SHong Zhang 2382dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1 2383dfb205c3SBarry Smith it is the regular CSR format excluding the lower triangular elements. 2384dfb205c3SBarry Smith 238569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSBAIJ(), MatCreateSeqSBAIJ() 2386c75a6043SHong Zhang 2387c75a6043SHong Zhang @*/ 23887087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat) 2389c75a6043SHong Zhang { 2390c75a6043SHong Zhang PetscErrorCode ierr; 2391c75a6043SHong Zhang PetscInt ii; 2392c75a6043SHong Zhang Mat_SeqSBAIJ *sbaij; 2393c75a6043SHong Zhang 2394c75a6043SHong Zhang PetscFunctionBegin; 2395e32f2f54SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 2396e32f2f54SBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2397c75a6043SHong Zhang 2398c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2399c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 2400c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQSBAIJ);CHKERRQ(ierr); 2401c75a6043SHong Zhang ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 2402c75a6043SHong Zhang sbaij = (Mat_SeqSBAIJ*)(*mat)->data; 2403dcca6d9dSJed Brown ierr = PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen);CHKERRQ(ierr); 24043bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr); 2405c75a6043SHong Zhang 2406c75a6043SHong Zhang sbaij->i = i; 2407c75a6043SHong Zhang sbaij->j = j; 2408c75a6043SHong Zhang sbaij->a = a; 240926fbe8dcSKarl Rupp 2410c75a6043SHong Zhang sbaij->singlemalloc = PETSC_FALSE; 2411c75a6043SHong Zhang sbaij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 2412e6b907acSBarry Smith sbaij->free_a = PETSC_FALSE; 2413e6b907acSBarry Smith sbaij->free_ij = PETSC_FALSE; 2414c75a6043SHong Zhang 2415c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 2416c75a6043SHong Zhang sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii]; 2417c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2418e32f2f54SBarry Smith if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 2419c75a6043SHong Zhang #endif 2420c75a6043SHong Zhang } 2421c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2422c75a6043SHong Zhang for (ii=0; ii<sbaij->i[m]; ii++) { 2423e32f2f54SBarry Smith if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 2424e32f2f54SBarry Smith if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 2425c75a6043SHong Zhang } 2426c75a6043SHong Zhang #endif 2427c75a6043SHong Zhang 2428c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2429c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2430c75a6043SHong Zhang PetscFunctionReturn(0); 2431c75a6043SHong Zhang } 2432d06b337dSHong Zhang 243359f5e6ceSHong Zhang #undef __FUNCT__ 243459f5e6ceSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ" 243559f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 243659f5e6ceSHong Zhang { 243759f5e6ceSHong Zhang PetscErrorCode ierr; 243859f5e6ceSHong Zhang 243959f5e6ceSHong Zhang PetscFunctionBegin; 244059f5e6ceSHong Zhang ierr = MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr); 244159f5e6ceSHong Zhang PetscFunctionReturn(0); 244259f5e6ceSHong Zhang } 2443d06b337dSHong Zhang 2444d06b337dSHong Zhang 244549b5e25fSSatish Balay 244649b5e25fSSatish Balay 2447