xref: /petsc/src/mat/impls/sbaij/seq/sbaij.c (revision 7edd0491b082cc70c5dbf3ab975641fcfe054a01)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
249b5e25fSSatish Balay 
349b5e25fSSatish Balay /*
4a1373b80SHong Zhang     Defines the basic matrix operations for the SBAIJ (compressed row)
549b5e25fSSatish Balay   matrix storage format.
649b5e25fSSatish Balay */
79e070d67SMatthew Knepley #include "src/mat/impls/baij/seq/baij.h"         /*I "petscmat.h" I*/
849b5e25fSSatish Balay #include "src/inline/spops.h"
9aec82049SSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
1049b5e25fSSatish Balay 
1149b5e25fSSatish Balay #define CHUNKSIZE  10
1249b5e25fSSatish Balay 
1349b5e25fSSatish Balay /*
1449b5e25fSSatish Balay      Checks for missing diagonals
1549b5e25fSSatish Balay */
164a2ae208SSatish Balay #undef __FUNCT__
174a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ"
18dfbe8321SBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A)
1949b5e25fSSatish Balay {
20045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
216849ba73SBarry Smith   PetscErrorCode ierr;
2213f74950SBarry Smith   PetscInt       *diag,*jj = a->j,i;
2349b5e25fSSatish Balay 
2449b5e25fSSatish Balay   PetscFunctionBegin;
25045c9aa0SHong Zhang   ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr);
2649b5e25fSSatish Balay   diag = a->diag;
2749b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
2877431f27SBarry Smith     if (jj[diag[i]] != i) SETERRQ1(PETSC_ERR_ARG_CORRUPT,"Matrix is missing diagonal number %D",i);
2949b5e25fSSatish Balay   }
3049b5e25fSSatish Balay   PetscFunctionReturn(0);
3149b5e25fSSatish Balay }
3249b5e25fSSatish Balay 
334a2ae208SSatish Balay #undef __FUNCT__
344a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ"
35dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A)
3649b5e25fSSatish Balay {
37045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
386849ba73SBarry Smith   PetscErrorCode ierr;
3913f74950SBarry Smith   PetscInt       i,mbs = a->mbs;
4049b5e25fSSatish Balay 
4149b5e25fSSatish Balay   PetscFunctionBegin;
4249b5e25fSSatish Balay   if (a->diag) PetscFunctionReturn(0);
4349b5e25fSSatish Balay 
4413f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
4552e6d16bSBarry Smith   ierr = PetscLogObjectMemory(A,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
46b424e231SHong Zhang   for (i=0; i<mbs; i++) a->diag[i] = a->i[i];
4749b5e25fSSatish Balay   PetscFunctionReturn(0);
4849b5e25fSSatish Balay }
4949b5e25fSSatish Balay 
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ"
5213f74950SBarry Smith static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
5349b5e25fSSatish Balay {
54a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
5513f74950SBarry Smith   PetscInt     n = a->mbs,i;
5649b5e25fSSatish Balay 
5749b5e25fSSatish Balay   PetscFunctionBegin;
58d3e5a4abSHong Zhang   *nn = n;
59a1373b80SHong Zhang   if (!ia) PetscFunctionReturn(0);
60a1373b80SHong Zhang 
61a6ece127SHong Zhang   if (oshift == 1) {
62a6ece127SHong Zhang     /* temporarily add 1 to i and j indices */
6313f74950SBarry Smith     PetscInt nz = a->i[n];
646c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]++;
65a1373b80SHong Zhang     for (i=0; i<n+1; i++) a->i[i]++;
66a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
67a1373b80SHong Zhang   } else {
68a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
69a6ece127SHong Zhang   }
7049b5e25fSSatish Balay   PetscFunctionReturn(0);
7149b5e25fSSatish Balay }
7249b5e25fSSatish Balay 
734a2ae208SSatish Balay #undef __FUNCT__
744a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ"
7513f74950SBarry Smith static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
7649b5e25fSSatish Balay {
77b7aaefc3SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
7813f74950SBarry Smith   PetscInt     i,n = a->mbs;
79a6ece127SHong Zhang 
8049b5e25fSSatish Balay   PetscFunctionBegin;
8149b5e25fSSatish Balay   if (!ia) PetscFunctionReturn(0);
82a6ece127SHong Zhang 
83a6ece127SHong Zhang   if (oshift == 1) {
8413f74950SBarry Smith     PetscInt nz = a->i[n]-1;
856c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]--;
86a6ece127SHong Zhang     for (i=0; i<n+1; i++) a->i[i]--;
87a6ece127SHong Zhang   }
88a6ece127SHong Zhang   PetscFunctionReturn(0);
8949b5e25fSSatish Balay }
9049b5e25fSSatish Balay 
914a2ae208SSatish Balay #undef __FUNCT__
924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ"
93dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
9449b5e25fSSatish Balay {
9549b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
96dfbe8321SBarry Smith   PetscErrorCode ierr;
9749b5e25fSSatish Balay 
9849b5e25fSSatish Balay   PetscFunctionBegin;
99a9f03627SSatish Balay #if defined(PETSC_USE_LOG)
100899cda47SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap.N,a->nz);
101a9f03627SSatish Balay #endif
102085a36d4SBarry Smith   ierr = MatSeqXAIJFreeAIJ(a->singlemalloc,&a->a,&a->j,&a->i);CHKERRQ(ierr);
10349b5e25fSSatish Balay   if (a->row) {
10449b5e25fSSatish Balay     ierr = ISDestroy(a->row);CHKERRQ(ierr);
10549b5e25fSSatish Balay   }
10605b42c5fSBarry Smith   ierr = PetscFree(a->diag);CHKERRQ(ierr);
10705b42c5fSBarry Smith   ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
10849b5e25fSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
10905b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
11005b42c5fSBarry Smith   ierr = PetscFree(a->solves_work);CHKERRQ(ierr);
11105b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
11205b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
11305b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
1141a3463dfSHong Zhang 
1151a3463dfSHong Zhang   ierr = PetscFree(a->inew);CHKERRQ(ierr);
11649b5e25fSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
117901853e0SKris Buschelman 
118901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
119901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
120901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
121901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
122901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C","",PETSC_NULL);CHKERRQ(ierr);
123901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
12449b5e25fSSatish Balay   PetscFunctionReturn(0);
12549b5e25fSSatish Balay }
12649b5e25fSSatish Balay 
1274a2ae208SSatish Balay #undef __FUNCT__
1284a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ"
129dfbe8321SBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op)
13049b5e25fSSatish Balay {
131045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
13263ba0a88SBarry Smith   PetscErrorCode ierr;
13349b5e25fSSatish Balay 
13449b5e25fSSatish Balay   PetscFunctionBegin;
1354d9d31abSKris Buschelman   switch (op) {
1364d9d31abSKris Buschelman   case MAT_ROW_ORIENTED:
1374d9d31abSKris Buschelman     a->roworiented = PETSC_TRUE;
1384d9d31abSKris Buschelman     break;
1394d9d31abSKris Buschelman   case MAT_COLUMN_ORIENTED:
1404d9d31abSKris Buschelman     a->roworiented = PETSC_FALSE;
1414d9d31abSKris Buschelman     break;
1424d9d31abSKris Buschelman   case MAT_COLUMNS_SORTED:
1434d9d31abSKris Buschelman     a->sorted = PETSC_TRUE;
1444d9d31abSKris Buschelman     break;
1454d9d31abSKris Buschelman   case MAT_COLUMNS_UNSORTED:
1464d9d31abSKris Buschelman     a->sorted = PETSC_FALSE;
1474d9d31abSKris Buschelman     break;
1484d9d31abSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1494d9d31abSKris Buschelman     a->keepzeroedrows = PETSC_TRUE;
1504d9d31abSKris Buschelman     break;
1514d9d31abSKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1524d9d31abSKris Buschelman     a->nonew = 1;
1534d9d31abSKris Buschelman     break;
1544d9d31abSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1554d9d31abSKris Buschelman     a->nonew = -1;
1564d9d31abSKris Buschelman     break;
1574d9d31abSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1584d9d31abSKris Buschelman     a->nonew = -2;
1594d9d31abSKris Buschelman     break;
1604d9d31abSKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1614d9d31abSKris Buschelman     a->nonew = 0;
1624d9d31abSKris Buschelman     break;
1634d9d31abSKris Buschelman   case MAT_ROWS_SORTED:
1644d9d31abSKris Buschelman   case MAT_ROWS_UNSORTED:
1654d9d31abSKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1664d9d31abSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1674d9d31abSKris Buschelman   case MAT_USE_HASH_TABLE:
168ae15b995SBarry Smith     ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr);
1694d9d31abSKris Buschelman     break;
1704d9d31abSKris Buschelman   case MAT_NO_NEW_DIAGONALS:
17129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1729a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
1739a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
1749a4540c5SBarry Smith   case MAT_HERMITIAN:
1759a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
17677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
17777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1789a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
1799a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1809a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
181941593c8SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
182941593c8SHong Zhang     a->ignore_ltriangular = PETSC_TRUE;
183941593c8SHong Zhang     break;
184941593c8SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
185941593c8SHong Zhang     a->ignore_ltriangular = PETSC_FALSE;
18677e54ba9SKris Buschelman     break;
187f5edf698SHong Zhang   case MAT_GETROW_UPPERTRIANGULAR:
188f5edf698SHong Zhang     a->getrow_utriangular = PETSC_TRUE;
189f5edf698SHong Zhang     break;
1904d9d31abSKris Buschelman   default:
19129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
19249b5e25fSSatish Balay   }
19349b5e25fSSatish Balay   PetscFunctionReturn(0);
19449b5e25fSSatish Balay }
19549b5e25fSSatish Balay 
1964a2ae208SSatish Balay #undef __FUNCT__
1974a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ"
19813f74950SBarry Smith PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **v)
19949b5e25fSSatish Balay {
20049b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
2016849ba73SBarry Smith   PetscErrorCode ierr;
20213f74950SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*cols_i,bs2;
20349b5e25fSSatish Balay   MatScalar      *aa,*aa_i;
20487828ca2SBarry Smith   PetscScalar    *v_i;
20549b5e25fSSatish Balay 
20649b5e25fSSatish Balay   PetscFunctionBegin;
207f5edf698SHong Zhang   if (A && !a->getrow_utriangular) SETERRQ(PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR) or MatGetRowUpperTriangular()");
208f5edf698SHong Zhang   /* Get the upper triangular part of the row */
209899cda47SBarry Smith   bs  = A->rmap.bs;
21049b5e25fSSatish Balay   ai  = a->i;
21149b5e25fSSatish Balay   aj  = a->j;
21249b5e25fSSatish Balay   aa  = a->a;
21349b5e25fSSatish Balay   bs2 = a->bs2;
21449b5e25fSSatish Balay 
215899cda47SBarry Smith   if (row < 0 || row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "Row %D out of range", row);
21649b5e25fSSatish Balay 
21749b5e25fSSatish Balay   bn  = row/bs;   /* Block number */
21849b5e25fSSatish Balay   bp  = row % bs; /* Block position */
21949b5e25fSSatish Balay   M   = ai[bn+1] - ai[bn];
22049b5e25fSSatish Balay   *ncols = bs*M;
22149b5e25fSSatish Balay 
22249b5e25fSSatish Balay   if (v) {
22349b5e25fSSatish Balay     *v = 0;
22449b5e25fSSatish Balay     if (*ncols) {
22587828ca2SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscScalar),v);CHKERRQ(ierr);
22649b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
22749b5e25fSSatish Balay         v_i  = *v + i*bs;
22849b5e25fSSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
22949b5e25fSSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
23049b5e25fSSatish Balay       }
23149b5e25fSSatish Balay     }
23249b5e25fSSatish Balay   }
23349b5e25fSSatish Balay 
23449b5e25fSSatish Balay   if (cols) {
23549b5e25fSSatish Balay     *cols = 0;
23649b5e25fSSatish Balay     if (*ncols) {
23713f74950SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscInt),cols);CHKERRQ(ierr);
23849b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
23949b5e25fSSatish Balay         cols_i = *cols + i*bs;
24049b5e25fSSatish Balay         itmp  = bs*aj[ai[bn] + i];
24149b5e25fSSatish Balay         for (j=0; j<bs; j++) {cols_i[j] = itmp++;}
24249b5e25fSSatish Balay       }
24349b5e25fSSatish Balay     }
24449b5e25fSSatish Balay   }
24549b5e25fSSatish Balay 
24649b5e25fSSatish Balay   /*search column A(0:row-1,row) (=A(row,0:row-1)). Could be expensive! */
2475ddb2528SHong Zhang   /* this segment is currently removed, so only entries in the upper triangle are obtained */
2485ddb2528SHong Zhang #ifdef column_search
24949b5e25fSSatish Balay   v_i    = *v    + M*bs;
25049b5e25fSSatish Balay   cols_i = *cols + M*bs;
25149b5e25fSSatish Balay   for (i=0; i<bn; i++){ /* for each block row */
25249b5e25fSSatish Balay     M = ai[i+1] - ai[i];
25349b5e25fSSatish Balay     for (j=0; j<M; j++){
25449b5e25fSSatish Balay       itmp = aj[ai[i] + j];    /* block column value */
25549b5e25fSSatish Balay       if (itmp == bn){
25649b5e25fSSatish Balay         aa_i   = aa    + bs2*(ai[i] + j) + bs*bp;
25749b5e25fSSatish Balay         for (k=0; k<bs; k++) {
25849b5e25fSSatish Balay           *cols_i++ = i*bs+k;
25949b5e25fSSatish Balay           *v_i++    = aa_i[k];
26049b5e25fSSatish Balay         }
26149b5e25fSSatish Balay         *ncols += bs;
26249b5e25fSSatish Balay         break;
26349b5e25fSSatish Balay       }
26449b5e25fSSatish Balay     }
26549b5e25fSSatish Balay   }
2665ddb2528SHong Zhang #endif
26749b5e25fSSatish Balay   PetscFunctionReturn(0);
26849b5e25fSSatish Balay }
26949b5e25fSSatish Balay 
2704a2ae208SSatish Balay #undef __FUNCT__
2714a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ"
27213f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
27349b5e25fSSatish Balay {
274dfbe8321SBarry Smith   PetscErrorCode ierr;
27549b5e25fSSatish Balay 
27649b5e25fSSatish Balay   PetscFunctionBegin;
27705b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
27805b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
27949b5e25fSSatish Balay   PetscFunctionReturn(0);
28049b5e25fSSatish Balay }
28149b5e25fSSatish Balay 
2824a2ae208SSatish Balay #undef __FUNCT__
283f5edf698SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_SeqSBAIJ"
284f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A)
285f5edf698SHong Zhang {
286f5edf698SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
287f5edf698SHong Zhang 
288f5edf698SHong Zhang   PetscFunctionBegin;
289f5edf698SHong Zhang   a->getrow_utriangular = PETSC_TRUE;
290f5edf698SHong Zhang   PetscFunctionReturn(0);
291f5edf698SHong Zhang }
292f5edf698SHong Zhang #undef __FUNCT__
293f5edf698SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_SeqSBAIJ"
294f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A)
295f5edf698SHong Zhang {
296f5edf698SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
297f5edf698SHong Zhang 
298f5edf698SHong Zhang   PetscFunctionBegin;
299f5edf698SHong Zhang   a->getrow_utriangular = PETSC_FALSE;
300f5edf698SHong Zhang   PetscFunctionReturn(0);
301f5edf698SHong Zhang }
302f5edf698SHong Zhang 
303f5edf698SHong Zhang #undef __FUNCT__
3044a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ"
305dfbe8321SBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,Mat *B)
30649b5e25fSSatish Balay {
307dfbe8321SBarry Smith   PetscErrorCode ierr;
30849b5e25fSSatish Balay   PetscFunctionBegin;
309999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
3108115998fSBarry Smith   PetscFunctionReturn(0);
31149b5e25fSSatish Balay }
31249b5e25fSSatish Balay 
3134a2ae208SSatish Balay #undef __FUNCT__
3144a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII"
3156849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer)
31649b5e25fSSatish Balay {
31749b5e25fSSatish Balay   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
318dfbe8321SBarry Smith   PetscErrorCode    ierr;
319899cda47SBarry Smith   PetscInt          i,j,bs = A->rmap.bs,k,l,bs2=a->bs2;
3202dcb1b2aSMatthew Knepley   const char        *name;
321f3ef73ceSBarry Smith   PetscViewerFormat format;
32249b5e25fSSatish Balay 
32349b5e25fSSatish Balay   PetscFunctionBegin;
32480fe4e49SBarry Smith   ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
325b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
326456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
32777431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
328fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
32929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matlab format not supported");
330fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
331b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
33249b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
33349b5e25fSSatish Balay       for (j=0; j<bs; j++) {
33477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
33549b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
33649b5e25fSSatish Balay           for (l=0; l<bs; l++) {
33749b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
33849b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
339a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
34049b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
34149b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
342a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
34349b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
34449b5e25fSSatish Balay             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
345a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
34649b5e25fSSatish Balay             }
34749b5e25fSSatish Balay #else
34849b5e25fSSatish Balay             if (a->a[bs2*k + l*bs + j] != 0.0) {
349a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
35049b5e25fSSatish Balay             }
35149b5e25fSSatish Balay #endif
35249b5e25fSSatish Balay           }
35349b5e25fSSatish Balay         }
354b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
35549b5e25fSSatish Balay       }
35649b5e25fSSatish Balay     }
357b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
358c1490034SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
359c1490034SHong Zhang      PetscFunctionReturn(0);
36049b5e25fSSatish Balay   } else {
361b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
36249b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
36349b5e25fSSatish Balay       for (j=0; j<bs; j++) {
36477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
36549b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
36649b5e25fSSatish Balay           for (l=0; l<bs; l++) {
36749b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
36849b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
369a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
37049b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
37149b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
372a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
37349b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
37449b5e25fSSatish Balay             } else {
375a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
37649b5e25fSSatish Balay             }
37749b5e25fSSatish Balay #else
378a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," %D %G ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
37949b5e25fSSatish Balay #endif
38049b5e25fSSatish Balay           }
38149b5e25fSSatish Balay         }
382b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
38349b5e25fSSatish Balay       }
38449b5e25fSSatish Balay     }
385b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
38649b5e25fSSatish Balay   }
387b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
38849b5e25fSSatish Balay   PetscFunctionReturn(0);
38949b5e25fSSatish Balay }
39049b5e25fSSatish Balay 
3914a2ae208SSatish Balay #undef __FUNCT__
3924a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom"
3936849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
39449b5e25fSSatish Balay {
39549b5e25fSSatish Balay   Mat            A = (Mat) Aa;
39649b5e25fSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)A->data;
3976849ba73SBarry Smith   PetscErrorCode ierr;
398899cda47SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap.bs,bs2=a->bs2;
39913f74950SBarry Smith   PetscMPIInt    rank;
40049b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
40149b5e25fSSatish Balay   MatScalar      *aa;
40249b5e25fSSatish Balay   MPI_Comm       comm;
403b0a32e0cSBarry Smith   PetscViewer    viewer;
40449b5e25fSSatish Balay 
40549b5e25fSSatish Balay   PetscFunctionBegin;
40649b5e25fSSatish Balay   /*
40749b5e25fSSatish Balay     This is nasty. If this is called from an originally parallel matrix
40849b5e25fSSatish Balay     then all processes call this,but only the first has the matrix so the
40949b5e25fSSatish Balay     rest should return immediately.
41049b5e25fSSatish Balay   */
41149b5e25fSSatish Balay   ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr);
41249b5e25fSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
41349b5e25fSSatish Balay   if (rank) PetscFunctionReturn(0);
41449b5e25fSSatish Balay 
41549b5e25fSSatish Balay   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
41649b5e25fSSatish Balay 
417b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
418b0a32e0cSBarry Smith   PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");
41949b5e25fSSatish Balay 
42049b5e25fSSatish Balay   /* loop over matrix elements drawing boxes */
421b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
42249b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
42349b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
424899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
42549b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
42649b5e25fSSatish Balay       aa = a->a + j*bs2;
42749b5e25fSSatish Balay       for (k=0; k<bs; k++) {
42849b5e25fSSatish Balay         for (l=0; l<bs; l++) {
42949b5e25fSSatish Balay           if (PetscRealPart(*aa++) >=  0.) continue;
430b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
43149b5e25fSSatish Balay         }
43249b5e25fSSatish Balay       }
43349b5e25fSSatish Balay     }
43449b5e25fSSatish Balay   }
435b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
43649b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
43749b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
438899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
43949b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
44049b5e25fSSatish Balay       aa = a->a + j*bs2;
44149b5e25fSSatish Balay       for (k=0; k<bs; k++) {
44249b5e25fSSatish Balay         for (l=0; l<bs; l++) {
44349b5e25fSSatish Balay           if (PetscRealPart(*aa++) != 0.) continue;
444b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
44549b5e25fSSatish Balay         }
44649b5e25fSSatish Balay       }
44749b5e25fSSatish Balay     }
44849b5e25fSSatish Balay   }
44949b5e25fSSatish Balay 
450b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
45149b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
45249b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
453899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
45449b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
45549b5e25fSSatish Balay       aa = a->a + j*bs2;
45649b5e25fSSatish Balay       for (k=0; k<bs; k++) {
45749b5e25fSSatish Balay         for (l=0; l<bs; l++) {
45849b5e25fSSatish Balay           if (PetscRealPart(*aa++) <= 0.) continue;
459b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
46049b5e25fSSatish Balay         }
46149b5e25fSSatish Balay       }
46249b5e25fSSatish Balay     }
46349b5e25fSSatish Balay   }
46449b5e25fSSatish Balay   PetscFunctionReturn(0);
46549b5e25fSSatish Balay }
46649b5e25fSSatish Balay 
4674a2ae208SSatish Balay #undef __FUNCT__
4684a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw"
4696849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer)
47049b5e25fSSatish Balay {
471dfbe8321SBarry Smith   PetscErrorCode ierr;
47249b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,w,h;
473b0a32e0cSBarry Smith   PetscDraw      draw;
47449b5e25fSSatish Balay   PetscTruth     isnull;
47549b5e25fSSatish Balay 
47649b5e25fSSatish Balay   PetscFunctionBegin;
47749b5e25fSSatish Balay 
478b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
479b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
48049b5e25fSSatish Balay 
48149b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
482899cda47SBarry Smith   xr  = A->rmap.N; yr = A->rmap.N; h = yr/10.0; w = xr/10.0;
48349b5e25fSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
484b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
485b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
48649b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
48749b5e25fSSatish Balay   PetscFunctionReturn(0);
48849b5e25fSSatish Balay }
48949b5e25fSSatish Balay 
4904a2ae208SSatish Balay #undef __FUNCT__
4914a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ"
492dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer)
49349b5e25fSSatish Balay {
494dfbe8321SBarry Smith   PetscErrorCode ierr;
49532077d6dSBarry Smith   PetscTruth     iascii,isdraw;
49649b5e25fSSatish Balay 
49749b5e25fSSatish Balay   PetscFunctionBegin;
49832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
499fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
50032077d6dSBarry Smith   if (iascii){
50149b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
50249b5e25fSSatish Balay   } else if (isdraw) {
50349b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr);
50449b5e25fSSatish Balay   } else {
505a5e6ed63SBarry Smith     Mat B;
506ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
507a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
508a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
50949b5e25fSSatish Balay   }
51049b5e25fSSatish Balay   PetscFunctionReturn(0);
51149b5e25fSSatish Balay }
51249b5e25fSSatish Balay 
51349b5e25fSSatish Balay 
5144a2ae208SSatish Balay #undef __FUNCT__
5154a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ"
51613f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
51749b5e25fSSatish Balay {
518045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
51913f74950SBarry Smith   PetscInt     *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
52013f74950SBarry Smith   PetscInt     *ai = a->i,*ailen = a->ilen;
521899cda47SBarry Smith   PetscInt     brow,bcol,ridx,cidx,bs=A->rmap.bs,bs2=a->bs2;
52249b5e25fSSatish Balay   MatScalar    *ap,*aa = a->a,zero = 0.0;
52349b5e25fSSatish Balay 
52449b5e25fSSatish Balay   PetscFunctionBegin;
52549b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
52649b5e25fSSatish Balay     row  = im[k]; brow = row/bs;
52777431f27SBarry Smith     if (row < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row);
528899cda47SBarry Smith     if (row >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap.N-1);
52949b5e25fSSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
53049b5e25fSSatish Balay     nrow = ailen[brow];
53149b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
53277431f27SBarry Smith       if (in[l] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]);
533899cda47SBarry Smith       if (in[l] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap.n-1);
53449b5e25fSSatish Balay       col  = in[l] ;
53549b5e25fSSatish Balay       bcol = col/bs;
53649b5e25fSSatish Balay       cidx = col%bs;
53749b5e25fSSatish Balay       ridx = row%bs;
53849b5e25fSSatish Balay       high = nrow;
53949b5e25fSSatish Balay       low  = 0; /* assume unsorted */
54049b5e25fSSatish Balay       while (high-low > 5) {
54149b5e25fSSatish Balay         t = (low+high)/2;
54249b5e25fSSatish Balay         if (rp[t] > bcol) high = t;
54349b5e25fSSatish Balay         else             low  = t;
54449b5e25fSSatish Balay       }
54549b5e25fSSatish Balay       for (i=low; i<high; i++) {
54649b5e25fSSatish Balay         if (rp[i] > bcol) break;
54749b5e25fSSatish Balay         if (rp[i] == bcol) {
54849b5e25fSSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
54949b5e25fSSatish Balay           goto finished;
55049b5e25fSSatish Balay         }
55149b5e25fSSatish Balay       }
55249b5e25fSSatish Balay       *v++ = zero;
55349b5e25fSSatish Balay        finished:;
55449b5e25fSSatish Balay     }
55549b5e25fSSatish Balay   }
55649b5e25fSSatish Balay   PetscFunctionReturn(0);
55749b5e25fSSatish Balay }
55849b5e25fSSatish Balay 
55949b5e25fSSatish Balay 
5604a2ae208SSatish Balay #undef __FUNCT__
5614a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ"
56213f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
56349b5e25fSSatish Balay {
5640880e062SHong Zhang   Mat_SeqSBAIJ    *a = (Mat_SeqSBAIJ*)A->data;
5656849ba73SBarry Smith   PetscErrorCode  ierr;
566e2ee6c50SBarry Smith   PetscInt        *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
56713f74950SBarry Smith   PetscInt        *imax=a->imax,*ai=a->i,*ailen=a->ilen;
568899cda47SBarry Smith   PetscInt        *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap.bs,stepval;
5690880e062SHong Zhang   PetscTruth      roworiented=a->roworiented;
570f15d580aSBarry Smith   const MatScalar *value = v;
571f15d580aSBarry Smith   MatScalar       *ap,*aa = a->a,*bap;
5720880e062SHong Zhang 
57349b5e25fSSatish Balay   PetscFunctionBegin;
5740880e062SHong Zhang   if (roworiented) {
5750880e062SHong Zhang     stepval = (n-1)*bs;
5760880e062SHong Zhang   } else {
5770880e062SHong Zhang     stepval = (m-1)*bs;
5780880e062SHong Zhang   }
5790880e062SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
5800880e062SHong Zhang     row  = im[k];
5810880e062SHong Zhang     if (row < 0) continue;
5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
58377431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
5840880e062SHong Zhang #endif
5850880e062SHong Zhang     rp   = aj + ai[row];
5860880e062SHong Zhang     ap   = aa + bs2*ai[row];
5870880e062SHong Zhang     rmax = imax[row];
5880880e062SHong Zhang     nrow = ailen[row];
5890880e062SHong Zhang     low  = 0;
590818f2c47SBarry Smith     high = nrow;
5910880e062SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
5920880e062SHong Zhang       if (in[l] < 0) continue;
5930880e062SHong Zhang       col = in[l];
5942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
59577431f27SBarry Smith       if (col >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",col,a->nbs-1);
596b1823623SSatish Balay #endif
5970880e062SHong Zhang       if (col < row) continue; /* ignore lower triangular block */
5980880e062SHong Zhang       if (roworiented) {
5990880e062SHong Zhang         value = v + k*(stepval+bs)*bs + l*bs;
6000880e062SHong Zhang       } else {
6010880e062SHong Zhang         value = v + l*(stepval+bs)*bs + k*bs;
6020880e062SHong Zhang       }
6037cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
604e2ee6c50SBarry Smith       lastcol = col;
6050880e062SHong Zhang       while (high-low > 7) {
6060880e062SHong Zhang         t = (low+high)/2;
6070880e062SHong Zhang         if (rp[t] > col) high = t;
6080880e062SHong Zhang         else             low  = t;
6090880e062SHong Zhang       }
6100880e062SHong Zhang       for (i=low; i<high; i++) {
6110880e062SHong Zhang         if (rp[i] > col) break;
6120880e062SHong Zhang         if (rp[i] == col) {
6130880e062SHong Zhang           bap  = ap +  bs2*i;
6140880e062SHong Zhang           if (roworiented) {
6150880e062SHong Zhang             if (is == ADD_VALUES) {
6160880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6170880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6180880e062SHong Zhang                   bap[jj] += *value++;
6190880e062SHong Zhang                 }
6200880e062SHong Zhang               }
6210880e062SHong Zhang             } else {
6220880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6230880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6240880e062SHong Zhang                   bap[jj] = *value++;
6250880e062SHong Zhang                 }
6260880e062SHong Zhang                }
6270880e062SHong Zhang             }
6280880e062SHong Zhang           } else {
6290880e062SHong Zhang             if (is == ADD_VALUES) {
6300880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6310880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6320880e062SHong Zhang                   *bap++ += *value++;
6330880e062SHong Zhang                 }
6340880e062SHong Zhang               }
6350880e062SHong Zhang             } else {
6360880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6370880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6380880e062SHong Zhang                   *bap++  = *value++;
6390880e062SHong Zhang                 }
6400880e062SHong Zhang               }
6410880e062SHong Zhang             }
6420880e062SHong Zhang           }
6430880e062SHong Zhang           goto noinsert2;
6440880e062SHong Zhang         }
6450880e062SHong Zhang       }
6460880e062SHong Zhang       if (nonew == 1) goto noinsert2;
647085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
648ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,row,col,rmax,aa,ai,aj,a->mbs,rp,ap,imax,nonew);
649c03d1d03SSatish Balay       N = nrow++ - 1; high++;
6500880e062SHong Zhang       /* shift up all the later entries in this row */
6510880e062SHong Zhang       for (ii=N; ii>=i; ii--) {
6520880e062SHong Zhang         rp[ii+1] = rp[ii];
6530880e062SHong Zhang         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
6540880e062SHong Zhang       }
6550880e062SHong Zhang       if (N >= i) {
6560880e062SHong Zhang         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
6570880e062SHong Zhang       }
6580880e062SHong Zhang       rp[i] = col;
6590880e062SHong Zhang       bap   = ap +  bs2*i;
6600880e062SHong Zhang       if (roworiented) {
6610880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6620880e062SHong Zhang           for (jj=ii; jj<bs2; jj+=bs) {
6630880e062SHong Zhang             bap[jj] = *value++;
6640880e062SHong Zhang           }
6650880e062SHong Zhang         }
6660880e062SHong Zhang       } else {
6670880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6680880e062SHong Zhang           for (jj=0; jj<bs; jj++) {
6690880e062SHong Zhang             *bap++  = *value++;
6700880e062SHong Zhang           }
6710880e062SHong Zhang         }
6720880e062SHong Zhang        }
6730880e062SHong Zhang     noinsert2:;
6740880e062SHong Zhang       low = i;
6750880e062SHong Zhang     }
6760880e062SHong Zhang     ailen[row] = nrow;
6770880e062SHong Zhang   }
6780880e062SHong Zhang    PetscFunctionReturn(0);
67949b5e25fSSatish Balay }
68049b5e25fSSatish Balay 
6814a2ae208SSatish Balay #undef __FUNCT__
6824a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ"
683dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode)
68449b5e25fSSatish Balay {
68549b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
6866849ba73SBarry Smith   PetscErrorCode ierr;
68713f74950SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
688899cda47SBarry Smith   PetscInt       m = A->rmap.N,*ip,N,*ailen = a->ilen;
68913f74950SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
69049b5e25fSSatish Balay   MatScalar      *aa = a->a,*ap;
69149b5e25fSSatish Balay 
69249b5e25fSSatish Balay   PetscFunctionBegin;
69349b5e25fSSatish Balay   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
69449b5e25fSSatish Balay 
69549b5e25fSSatish Balay   if (m) rmax = ailen[0];
69649b5e25fSSatish Balay   for (i=1; i<mbs; i++) {
69749b5e25fSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
69849b5e25fSSatish Balay     fshift += imax[i-1] - ailen[i-1];
69949b5e25fSSatish Balay      rmax   = PetscMax(rmax,ailen[i]);
70049b5e25fSSatish Balay      if (fshift) {
70149b5e25fSSatish Balay        ip = aj + ai[i]; ap = aa + bs2*ai[i];
70249b5e25fSSatish Balay        N = ailen[i];
70349b5e25fSSatish Balay        for (j=0; j<N; j++) {
70449b5e25fSSatish Balay          ip[j-fshift] = ip[j];
70549b5e25fSSatish Balay          ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
70649b5e25fSSatish Balay        }
70749b5e25fSSatish Balay      }
70849b5e25fSSatish Balay      ai[i] = ai[i-1] + ailen[i-1];
70949b5e25fSSatish Balay   }
71049b5e25fSSatish Balay   if (mbs) {
71149b5e25fSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
71249b5e25fSSatish Balay      ai[mbs] = ai[mbs-1] + ailen[mbs-1];
71349b5e25fSSatish Balay   }
71449b5e25fSSatish Balay   /* reset ilen and imax for each row */
71549b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
71649b5e25fSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
71749b5e25fSSatish Balay   }
7186c6c5352SBarry Smith   a->nz = ai[mbs];
71949b5e25fSSatish Balay 
720b424e231SHong Zhang   /* diagonals may have moved, reset it */
721b424e231SHong Zhang   if (a->diag) {
72213f74950SBarry Smith     ierr = PetscMemcpy(a->diag,ai,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
72349b5e25fSSatish Balay   }
724899cda47SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap.N,A->rmap.bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
725ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
726ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
72749b5e25fSSatish Balay   a->reallocs          = 0;
72849b5e25fSSatish Balay   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
72949b5e25fSSatish Balay   PetscFunctionReturn(0);
73049b5e25fSSatish Balay }
73149b5e25fSSatish Balay 
73249b5e25fSSatish Balay /*
73349b5e25fSSatish Balay    This function returns an array of flags which indicate the locations of contiguous
73449b5e25fSSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
73549b5e25fSSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
73649b5e25fSSatish Balay    Assume: sizes should be long enough to hold all the values.
73749b5e25fSSatish Balay */
7384a2ae208SSatish Balay #undef __FUNCT__
7394a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks"
74013f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
74149b5e25fSSatish Balay {
74213f74950SBarry Smith   PetscInt   i,j,k,row;
74349b5e25fSSatish Balay   PetscTruth flg;
74449b5e25fSSatish Balay 
74549b5e25fSSatish Balay   PetscFunctionBegin;
74649b5e25fSSatish Balay    for (i=0,j=0; i<n; j++) {
74749b5e25fSSatish Balay      row = idx[i];
74849b5e25fSSatish Balay      if (row%bs!=0) { /* Not the begining of a block */
74949b5e25fSSatish Balay        sizes[j] = 1;
75049b5e25fSSatish Balay        i++;
75149b5e25fSSatish Balay      } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */
75249b5e25fSSatish Balay        sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
75349b5e25fSSatish Balay        i++;
75449b5e25fSSatish Balay      } else { /* Begining of the block, so check if the complete block exists */
75549b5e25fSSatish Balay        flg = PETSC_TRUE;
75649b5e25fSSatish Balay        for (k=1; k<bs; k++) {
75749b5e25fSSatish Balay          if (row+k != idx[i+k]) { /* break in the block */
75849b5e25fSSatish Balay            flg = PETSC_FALSE;
75949b5e25fSSatish Balay            break;
76049b5e25fSSatish Balay          }
76149b5e25fSSatish Balay        }
762abc0a331SBarry Smith        if (flg) { /* No break in the bs */
76349b5e25fSSatish Balay          sizes[j] = bs;
76449b5e25fSSatish Balay          i+= bs;
76549b5e25fSSatish Balay        } else {
76649b5e25fSSatish Balay          sizes[j] = 1;
76749b5e25fSSatish Balay          i++;
76849b5e25fSSatish Balay        }
76949b5e25fSSatish Balay      }
77049b5e25fSSatish Balay    }
77149b5e25fSSatish Balay    *bs_max = j;
77249b5e25fSSatish Balay    PetscFunctionReturn(0);
77349b5e25fSSatish Balay }
77449b5e25fSSatish Balay 
77549b5e25fSSatish Balay 
77649b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
77749b5e25fSSatish Balay    Any a(i,j) with i>j input by user is ingored.
77849b5e25fSSatish Balay */
77949b5e25fSSatish Balay 
7804a2ae208SSatish Balay #undef __FUNCT__
7814a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ"
78213f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
78349b5e25fSSatish Balay {
78449b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
7856849ba73SBarry Smith   PetscErrorCode ierr;
786e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
78713f74950SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
788899cda47SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->rmap.bs,brow,bcol;
78913f74950SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
79049b5e25fSSatish Balay   MatScalar      *ap,value,*aa=a->a,*bap;
79149b5e25fSSatish Balay 
79249b5e25fSSatish Balay   PetscFunctionBegin;
79349b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
79449b5e25fSSatish Balay     row  = im[k];       /* row number */
79549b5e25fSSatish Balay     brow = row/bs;      /* block row number */
79649b5e25fSSatish Balay     if (row < 0) continue;
7972515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
798899cda47SBarry Smith     if (row >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap.N-1);
79949b5e25fSSatish Balay #endif
80049b5e25fSSatish Balay     rp   = aj + ai[brow]; /*ptr to beginning of column value of the row block*/
80149b5e25fSSatish Balay     ap   = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/
80249b5e25fSSatish Balay     rmax = imax[brow];  /* maximum space allocated for this row */
80349b5e25fSSatish Balay     nrow = ailen[brow]; /* actual length of this row */
80449b5e25fSSatish Balay     low  = 0;
80549b5e25fSSatish Balay 
80649b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
80749b5e25fSSatish Balay       if (in[l] < 0) continue;
8082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
809899cda47SBarry Smith       if (in[l] >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->rmap.N-1);
81049b5e25fSSatish Balay #endif
81149b5e25fSSatish Balay       col = in[l];
81249b5e25fSSatish Balay       bcol = col/bs;              /* block col number */
81349b5e25fSSatish Balay 
814941593c8SHong Zhang       if (brow > bcol) {
815941593c8SHong Zhang         if (a->ignore_ltriangular){
816941593c8SHong Zhang           continue; /* ignore lower triangular values */
817941593c8SHong Zhang         } else {
818941593c8SHong Zhang           SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
819941593c8SHong Zhang         }
820941593c8SHong Zhang       }
821f4989cb3SHong Zhang 
82249b5e25fSSatish Balay       ridx = row % bs; cidx = col % bs; /*row and col index inside the block */
8238549e402SHong Zhang       if ((brow==bcol && ridx<=cidx) || (brow<bcol)){
82449b5e25fSSatish Balay         /* element value a(k,l) */
82549b5e25fSSatish Balay         if (roworiented) {
82649b5e25fSSatish Balay           value = v[l + k*n];
82749b5e25fSSatish Balay         } else {
82849b5e25fSSatish Balay           value = v[k + l*m];
82949b5e25fSSatish Balay         }
83049b5e25fSSatish Balay 
83149b5e25fSSatish Balay         /* move pointer bap to a(k,l) quickly and add/insert value */
8327cd84e04SBarry Smith         if (col <= lastcol) low = 0; high = nrow;
833e2ee6c50SBarry Smith         lastcol = col;
83449b5e25fSSatish Balay         while (high-low > 7) {
83549b5e25fSSatish Balay           t = (low+high)/2;
83649b5e25fSSatish Balay           if (rp[t] > bcol) high = t;
83749b5e25fSSatish Balay           else              low  = t;
83849b5e25fSSatish Balay         }
83949b5e25fSSatish Balay         for (i=low; i<high; i++) {
84049b5e25fSSatish Balay           if (rp[i] > bcol) break;
84149b5e25fSSatish Balay           if (rp[i] == bcol) {
84249b5e25fSSatish Balay             bap  = ap +  bs2*i + bs*cidx + ridx;
84349b5e25fSSatish Balay             if (is == ADD_VALUES) *bap += value;
84449b5e25fSSatish Balay             else                  *bap  = value;
8458549e402SHong Zhang             /* for diag block, add/insert its symmetric element a(cidx,ridx) */
8468549e402SHong Zhang             if (brow == bcol && ridx < cidx){
8478549e402SHong Zhang               bap  = ap +  bs2*i + bs*ridx + cidx;
8488549e402SHong Zhang               if (is == ADD_VALUES) *bap += value;
8498549e402SHong Zhang               else                  *bap  = value;
8508549e402SHong Zhang             }
85149b5e25fSSatish Balay             goto noinsert1;
85249b5e25fSSatish Balay           }
85349b5e25fSSatish Balay         }
85449b5e25fSSatish Balay 
85549b5e25fSSatish Balay         if (nonew == 1) goto noinsert1;
856085a36d4SBarry Smith         if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
857ed1caa07SMatthew Knepley         MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,imax,nonew);
85849b5e25fSSatish Balay 
859c03d1d03SSatish Balay         N = nrow++ - 1; high++;
86049b5e25fSSatish Balay         /* shift up all the later entries in this row */
86149b5e25fSSatish Balay         for (ii=N; ii>=i; ii--) {
86249b5e25fSSatish Balay           rp[ii+1] = rp[ii];
86349b5e25fSSatish Balay           ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
86449b5e25fSSatish Balay         }
86549b5e25fSSatish Balay         if (N>=i) {
86649b5e25fSSatish Balay           ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
86749b5e25fSSatish Balay         }
86849b5e25fSSatish Balay         rp[i]                      = bcol;
86949b5e25fSSatish Balay         ap[bs2*i + bs*cidx + ridx] = value;
87049b5e25fSSatish Balay       noinsert1:;
87149b5e25fSSatish Balay         low = i;
8728549e402SHong Zhang       }
87349b5e25fSSatish Balay     }   /* end of loop over added columns */
87449b5e25fSSatish Balay     ailen[brow] = nrow;
87549b5e25fSSatish Balay   }   /* end of loop over added rows */
87649b5e25fSSatish Balay   PetscFunctionReturn(0);
87749b5e25fSSatish Balay }
87849b5e25fSSatish Balay 
8796849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ(Mat,IS,MatFactorInfo*,Mat*);
8806849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactor_SeqSBAIJ(Mat,IS,MatFactorInfo*);
88113f74950SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_SeqSBAIJ(Mat,PetscInt,IS[],PetscInt);
88213f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrix_SeqSBAIJ(Mat,IS,IS,PetscInt,MatReuse,Mat*);
88313f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_SeqSBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat*[]);
884f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatScale_SeqSBAIJ(Mat,PetscScalar);
8856849ba73SBarry Smith EXTERN PetscErrorCode MatNorm_SeqSBAIJ(Mat,NormType,PetscReal *);
8866849ba73SBarry Smith EXTERN PetscErrorCode MatEqual_SeqSBAIJ(Mat,Mat,PetscTruth*);
8876849ba73SBarry Smith EXTERN PetscErrorCode MatGetDiagonal_SeqSBAIJ(Mat,Vec);
8886849ba73SBarry Smith EXTERN PetscErrorCode MatDiagonalScale_SeqSBAIJ(Mat,Vec,Vec);
8896849ba73SBarry Smith EXTERN PetscErrorCode MatGetInfo_SeqSBAIJ(Mat,MatInfoType,MatInfo *);
8906849ba73SBarry Smith EXTERN PetscErrorCode MatZeroEntries_SeqSBAIJ(Mat);
8916849ba73SBarry Smith EXTERN PetscErrorCode MatGetRowMax_SeqSBAIJ(Mat,Vec);
89249b5e25fSSatish Balay 
8936849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N(Mat,Vec,Vec);
8946849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1(Mat,Vec,Vec);
8956849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2(Mat,Vec,Vec);
8966849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3(Mat,Vec,Vec);
8976849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4(Mat,Vec,Vec);
8986849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5(Mat,Vec,Vec);
8996849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6(Mat,Vec,Vec);
9006849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7(Mat,Vec,Vec);
90149b5e25fSSatish Balay 
9026849ba73SBarry Smith EXTERN PetscErrorCode MatSolves_SeqSBAIJ_1(Mat,Vecs,Vecs);
903d59c15a7SBarry Smith 
9046849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1_NaturalOrdering(Mat,Vec,Vec);
9056849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2_NaturalOrdering(Mat,Vec,Vec);
9066849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3_NaturalOrdering(Mat,Vec,Vec);
9076849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4_NaturalOrdering(Mat,Vec,Vec);
9086849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5_NaturalOrdering(Mat,Vec,Vec);
9096849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6_NaturalOrdering(Mat,Vec,Vec);
9106849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7_NaturalOrdering(Mat,Vec,Vec);
9116849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N_NaturalOrdering(Mat,Vec,Vec);
91207f98182SSatish Balay 
913af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat,MatFactorInfo*,Mat*);
914af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat,MatFactorInfo*,Mat*);
915af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat,MatFactorInfo*,Mat*);
916af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat,MatFactorInfo*,Mat*);
917af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat,MatFactorInfo*,Mat*);
918af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat,MatFactorInfo*,Mat*);
919af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat,MatFactorInfo*,Mat*);
920af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat,MatFactorInfo*,Mat*);
92113f74950SBarry Smith EXTERN PetscErrorCode MatGetInertia_SeqSBAIJ(Mat,PetscInt*,PetscInt*,PetscInt*);
92249b5e25fSSatish Balay 
9236849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_1(Mat,Vec,Vec);
9246849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_2(Mat,Vec,Vec);
9256849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_3(Mat,Vec,Vec);
9266849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_4(Mat,Vec,Vec);
9276849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_5(Mat,Vec,Vec);
9286849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_6(Mat,Vec,Vec);
9296849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_7(Mat,Vec,Vec);
9306849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_N(Mat,Vec,Vec);
93149b5e25fSSatish Balay 
9326849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_1(Mat,Vec,Vec,Vec);
9336849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_2(Mat,Vec,Vec,Vec);
9346849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_3(Mat,Vec,Vec,Vec);
9356849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_4(Mat,Vec,Vec,Vec);
9366849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_5(Mat,Vec,Vec,Vec);
9376849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_6(Mat,Vec,Vec,Vec);
9386849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_7(Mat,Vec,Vec,Vec);
9396849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_N(Mat,Vec,Vec,Vec);
94049b5e25fSSatish Balay 
9414d101231SSatish Balay #ifdef HAVE_MatICCFactor
9426849ba73SBarry Smith /* modified from MatILUFactor_SeqSBAIJ, needs further work!  */
9434a2ae208SSatish Balay #undef __FUNCT__
9444d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ"
945dfbe8321SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,MatFactorInfo *info)
94649b5e25fSSatish Balay {
9474ccecd49SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inA->data;
94849b5e25fSSatish Balay   Mat            outA;
949dfbe8321SBarry Smith   PetscErrorCode ierr;
95049b5e25fSSatish Balay   PetscTruth     row_identity,col_identity;
95149b5e25fSSatish Balay 
95249b5e25fSSatish Balay   PetscFunctionBegin;
95349b5e25fSSatish Balay   outA          = inA;
9541260e1f8SHong Zhang   inA->factor   = FACTOR_CHOLESKY;
95549b5e25fSSatish Balay 
95649b5e25fSSatish Balay   if (!a->diag) {
9571a3463dfSHong Zhang     ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr);
95849b5e25fSSatish Balay   }
95949b5e25fSSatish Balay   /*
96049b5e25fSSatish Balay     Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver
96149b5e25fSSatish Balay     for ILU(0) factorization with natural ordering
96249b5e25fSSatish Balay   */
963899cda47SBarry Smith   switch (a->rmap.bs) {
96449b5e25fSSatish Balay   case 1:
9650fe9e5beSBarry Smith     inA->ops->solve            = MatSolve_SeqSBAIJ_1_NaturalOrdering;
96607f98182SSatish Balay     inA->ops->solvetranspose   = MatSolve_SeqSBAIJ_1_NaturalOrdering;
967d59c15a7SBarry Smith     inA->ops->solves           = MatSolves_SeqSBAIJ_1;
968ae15b995SBarry Smith     ierr = PetscInfo((inA,"Using special in-place natural ordering solvetrans BS=1\n");CHKERRQ(ierr);
96949b5e25fSSatish Balay   case 2:
9701a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
9711a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_2_NaturalOrdering;
9721a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_2_NaturalOrdering;
973ae15b995SBarry Smith     ierr = PetscInfo(inA,"Using special in-place natural ordering factor and solve BS=2\n");CHKERRQ(ierr);
97449b5e25fSSatish Balay     break;
97549b5e25fSSatish Balay   case 3:
9761a3463dfSHong Zhang      inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
9771a3463dfSHong Zhang      inA->ops->solve           = MatSolve_SeqSBAIJ_3_NaturalOrdering;
9781a3463dfSHong Zhang      inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_3_NaturalOrdering;
979ae15b995SBarry Smith      ierr = PetscInfo(inA,"Using special in-place natural ordering factor and solve BS=3\n");CHKERRQ(ierr);
98049b5e25fSSatish Balay      break;
98149b5e25fSSatish Balay   case 4:
9821a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
9831a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_4_NaturalOrdering;
9841a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_4_NaturalOrdering;
985ae15b995SBarry Smith     ierr = PetscInfo(inA,"Using special in-place natural ordering factor and solve BS=4\n");CHKERRQ(ierr);
98649b5e25fSSatish Balay     break;
98749b5e25fSSatish Balay   case 5:
9881a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
9891a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_5_NaturalOrdering;
9901a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_5_NaturalOrdering;
991ae15b995SBarry Smith     ierr = PetscInfo(inA,"Using special in-place natural ordering factor and solve BS=5\n");CHKERRQ(ierr);
99249b5e25fSSatish Balay     break;
99349b5e25fSSatish Balay   case 6:
9941a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
9951a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_6_NaturalOrdering;
9961a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_6_NaturalOrdering;
997ae15b995SBarry Smith     ierr = PetscInfo(inA,"Using special in-place natural ordering factor and solve BS=6\n");CHKERRQ(ierr);
99849b5e25fSSatish Balay     break;
99949b5e25fSSatish Balay   case 7:
10001a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
10011a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_7_NaturalOrdering;
10021a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_7_NaturalOrdering;
1003ae15b995SBarry Smith     ierr = PetscInfo(inA,"Using special in-place natural ordering factor and solve BS=7\n");CHKERRQ(ierr);
100449b5e25fSSatish Balay     break;
100549b5e25fSSatish Balay   default:
100649b5e25fSSatish Balay     a->row        = row;
10071a3463dfSHong Zhang     a->icol       = col;
100849b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
100949b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
101049b5e25fSSatish Balay 
101149b5e25fSSatish Balay     /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
101249b5e25fSSatish Balay     ierr = ISInvertPermutation(col,PETSC_DECIDE, &(a->icol));CHKERRQ(ierr);
101352e6d16bSBarry Smith     ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
101449b5e25fSSatish Balay 
101549b5e25fSSatish Balay     if (!a->solve_work) {
1016899cda47SBarry Smith       ierr = PetscMalloc((A->rmap.N+a->rmap.bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
1017899cda47SBarry Smith       ierr = PetscLogObjectMemory(inA,(A->rmap.N+a->rmap.bs)*sizeof(PetscScalar));CHKERRQ(ierr);
101849b5e25fSSatish Balay     }
101949b5e25fSSatish Balay   }
102049b5e25fSSatish Balay 
1021af281ebdSHong Zhang   ierr = MatCholeskyFactorNumeric(inA,info,&outA);CHKERRQ(ierr);
102249b5e25fSSatish Balay   PetscFunctionReturn(0);
102349b5e25fSSatish Balay }
1024950f1e5bSHong Zhang #endif
1025950f1e5bSHong Zhang 
10264a2ae208SSatish Balay #undef __FUNCT__
10274a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_SeqSBAIJ"
1028dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat A)
102949b5e25fSSatish Balay {
103049b5e25fSSatish Balay   static PetscTruth called = PETSC_FALSE;
103149b5e25fSSatish Balay   MPI_Comm          comm = A->comm;
1032dfbe8321SBarry Smith   PetscErrorCode    ierr;
103349b5e25fSSatish Balay 
103449b5e25fSSatish Balay   PetscFunctionBegin;
103549b5e25fSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
103649b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATSEQSBAIJ and MATMPISBAIJ matrix formats (the defaults):\n");CHKERRQ(ierr);
103749b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_block_size <block_size>\n");CHKERRQ(ierr);
1038f5edf698SHong Zhang   ierr = (*PetscHelpPrintf)(comm,"  -mat_ignore_lower_triangular: Ignore lower triangular values set by user\n");CHKERRQ(ierr);
1039f5edf698SHong Zhang   ierr = (*PetscHelpPrintf)(comm,"  -mat_getrow_uppertriangular: Enable MatGetRow() for retrieving the upper triangular part of the row\n");CHKERRQ(ierr);
104049b5e25fSSatish Balay   PetscFunctionReturn(0);
104149b5e25fSSatish Balay }
104249b5e25fSSatish Balay 
104349b5e25fSSatish Balay EXTERN_C_BEGIN
10444a2ae208SSatish Balay #undef __FUNCT__
10454a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ"
1046be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices)
104749b5e25fSSatish Balay {
1048045c9aa0SHong Zhang   Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data;
104913f74950SBarry Smith   PetscInt     i,nz,n;
105049b5e25fSSatish Balay 
105149b5e25fSSatish Balay   PetscFunctionBegin;
10526c6c5352SBarry Smith   nz = baij->maxnz;
1053899cda47SBarry Smith   n  = mat->cmap.n;
105449b5e25fSSatish Balay   for (i=0; i<nz; i++) {
105549b5e25fSSatish Balay     baij->j[i] = indices[i];
105649b5e25fSSatish Balay   }
10576c6c5352SBarry Smith    baij->nz = nz;
105849b5e25fSSatish Balay    for (i=0; i<n; i++) {
105949b5e25fSSatish Balay      baij->ilen[i] = baij->imax[i];
106049b5e25fSSatish Balay    }
106149b5e25fSSatish Balay    PetscFunctionReturn(0);
106249b5e25fSSatish Balay }
106349b5e25fSSatish Balay EXTERN_C_END
106449b5e25fSSatish Balay 
10654a2ae208SSatish Balay #undef __FUNCT__
10664a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices"
106749b5e25fSSatish Balay /*@
106819585528SSatish Balay   MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
106949b5e25fSSatish Balay   in the matrix.
107049b5e25fSSatish Balay 
107149b5e25fSSatish Balay   Input Parameters:
107219585528SSatish Balay   +  mat     - the SeqSBAIJ matrix
107349b5e25fSSatish Balay   -  indices - the column indices
107449b5e25fSSatish Balay 
107549b5e25fSSatish Balay   Level: advanced
107649b5e25fSSatish Balay 
107749b5e25fSSatish Balay   Notes:
107849b5e25fSSatish Balay   This can be called if you have precomputed the nonzero structure of the
107949b5e25fSSatish Balay   matrix and want to provide it to the matrix object to improve the performance
108049b5e25fSSatish Balay   of the MatSetValues() operation.
108149b5e25fSSatish Balay 
108249b5e25fSSatish Balay   You MUST have set the correct numbers of nonzeros per row in the call to
1083d1be2dadSMatthew Knepley   MatCreateSeqSBAIJ(), and the columns indices MUST be sorted.
108449b5e25fSSatish Balay 
1085ab9f2c04SSatish Balay   MUST be called before any calls to MatSetValues()
108649b5e25fSSatish Balay 
1087ab9f2c04SSatish Balay   .seealso: MatCreateSeqSBAIJ
108849b5e25fSSatish Balay @*/
1089be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices)
109049b5e25fSSatish Balay {
109113f74950SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
109249b5e25fSSatish Balay 
109349b5e25fSSatish Balay   PetscFunctionBegin;
10944482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
10954482741eSBarry Smith   PetscValidPointer(indices,2);
1096c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqSBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
109749b5e25fSSatish Balay   if (f) {
109849b5e25fSSatish Balay     ierr = (*f)(mat,indices);CHKERRQ(ierr);
109949b5e25fSSatish Balay   } else {
1100e005ede5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Wrong type of matrix to set column indices");
110149b5e25fSSatish Balay   }
110249b5e25fSSatish Balay   PetscFunctionReturn(0);
110349b5e25fSSatish Balay }
110449b5e25fSSatish Balay 
11054a2ae208SSatish Balay #undef __FUNCT__
11063c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqSBAIJ"
11073c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str)
11083c896bc6SHong Zhang {
11093c896bc6SHong Zhang   PetscErrorCode ierr;
11103c896bc6SHong Zhang 
11113c896bc6SHong Zhang   PetscFunctionBegin;
11123c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
11133c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
11143c896bc6SHong Zhang     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
11153c896bc6SHong Zhang     Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data;
11163c896bc6SHong Zhang 
1117899cda47SBarry Smith     if (a->i[A->rmap.N] != b->i[B->rmap.N]) {
11183c896bc6SHong Zhang       SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
11193c896bc6SHong Zhang     }
1120899cda47SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap.N])*sizeof(PetscScalar));CHKERRQ(ierr);
11213c896bc6SHong Zhang   } else {
1122f5edf698SHong Zhang     ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr);
11233c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1124f5edf698SHong Zhang     ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr);
11253c896bc6SHong Zhang   }
11263c896bc6SHong Zhang   PetscFunctionReturn(0);
11273c896bc6SHong Zhang }
11283c896bc6SHong Zhang 
11293c896bc6SHong Zhang #undef __FUNCT__
11304a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqSBAIJ"
1131dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqSBAIJ(Mat A)
1132273d9f13SBarry Smith {
1133dfbe8321SBarry Smith   PetscErrorCode ierr;
1134273d9f13SBarry Smith 
1135273d9f13SBarry Smith   PetscFunctionBegin;
1136*7edd0491SSatish Balay   ierr =  MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr);
1137273d9f13SBarry Smith   PetscFunctionReturn(0);
1138273d9f13SBarry Smith }
1139273d9f13SBarry Smith 
1140a6ece127SHong Zhang #undef __FUNCT__
1141a6ece127SHong Zhang #define __FUNCT__ "MatGetArray_SeqSBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1143a6ece127SHong Zhang {
1144a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
1145a6ece127SHong Zhang   PetscFunctionBegin;
1146a6ece127SHong Zhang   *array = a->a;
1147a6ece127SHong Zhang   PetscFunctionReturn(0);
1148a6ece127SHong Zhang }
1149a6ece127SHong Zhang 
1150a6ece127SHong Zhang #undef __FUNCT__
1151a6ece127SHong Zhang #define __FUNCT__ "MatRestoreArray_SeqSBAIJ"
1152dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1153a6ece127SHong Zhang {
1154a6ece127SHong Zhang   PetscFunctionBegin;
1155a6ece127SHong Zhang   PetscFunctionReturn(0);
1156a6ece127SHong Zhang  }
1157a6ece127SHong Zhang 
115842ee4b1aSHong Zhang #include "petscblaslapack.h"
115942ee4b1aSHong Zhang #undef __FUNCT__
116042ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ"
1161f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
116242ee4b1aSHong Zhang {
116342ee4b1aSHong Zhang   Mat_SeqSBAIJ   *x=(Mat_SeqSBAIJ *)X->data, *y=(Mat_SeqSBAIJ *)Y->data;
1164dfbe8321SBarry Smith   PetscErrorCode ierr;
1165899cda47SBarry Smith   PetscInt       i,bs=Y->rmap.bs,bs2,j;
11664ce68768SBarry Smith   PetscBLASInt   bnz = (PetscBLASInt)x->nz,one = 1;
116742ee4b1aSHong Zhang 
116842ee4b1aSHong Zhang   PetscFunctionBegin;
116942ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
1170f4df32b1SMatthew Knepley     PetscScalar alpha = a;
1171f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
1172c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1173c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
1174c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
1175c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
1176c537a176SHong Zhang     }
1177c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
1178c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
1179c4319e64SHong Zhang       y->XtoY = X;
1180c537a176SHong Zhang     }
1181c4319e64SHong Zhang     bs2 = bs*bs;
11826c6c5352SBarry Smith     for (i=0; i<x->nz; i++) {
1183c4319e64SHong Zhang       j = 0;
1184c4319e64SHong Zhang       while (j < bs2){
1185f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
1186c4319e64SHong Zhang         j++;
1187c537a176SHong Zhang       }
1188c4319e64SHong Zhang     }
1189ae15b995SBarry Smith     ierr = PetscInfo3(0,"ratio of nnz_s(X)/nnz_s(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
119042ee4b1aSHong Zhang   } else {
1191f5edf698SHong Zhang     ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr);
1192f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
1193f5edf698SHong Zhang     ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr);
119442ee4b1aSHong Zhang   }
119542ee4b1aSHong Zhang   PetscFunctionReturn(0);
119642ee4b1aSHong Zhang }
119742ee4b1aSHong Zhang 
1198efcf0fc3SBarry Smith #undef __FUNCT__
1199efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ"
1200dfbe8321SBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscTruth *flg)
1201efcf0fc3SBarry Smith {
1202efcf0fc3SBarry Smith   PetscFunctionBegin;
1203efcf0fc3SBarry Smith   *flg = PETSC_TRUE;
1204efcf0fc3SBarry Smith   PetscFunctionReturn(0);
1205efcf0fc3SBarry Smith }
1206efcf0fc3SBarry Smith 
1207efcf0fc3SBarry Smith #undef __FUNCT__
1208efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ"
1209dfbe8321SBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscTruth *flg)
1210efcf0fc3SBarry Smith {
1211efcf0fc3SBarry Smith    PetscFunctionBegin;
1212efcf0fc3SBarry Smith    *flg = PETSC_TRUE;
1213efcf0fc3SBarry Smith    PetscFunctionReturn(0);
1214efcf0fc3SBarry Smith }
1215efcf0fc3SBarry Smith 
1216efcf0fc3SBarry Smith #undef __FUNCT__
1217efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ"
1218dfbe8321SBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscTruth *flg)
1219efcf0fc3SBarry Smith  {
1220efcf0fc3SBarry Smith    PetscFunctionBegin;
1221efcf0fc3SBarry Smith    *flg = PETSC_FALSE;
1222efcf0fc3SBarry Smith    PetscFunctionReturn(0);
1223efcf0fc3SBarry Smith  }
1224efcf0fc3SBarry Smith 
122599cafbc1SBarry Smith #undef __FUNCT__
122699cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqSBAIJ"
122799cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A)
122899cafbc1SBarry Smith {
122999cafbc1SBarry Smith   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
123099cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
123199cafbc1SBarry Smith   PetscScalar    *aa = a->a;
123299cafbc1SBarry Smith 
123399cafbc1SBarry Smith   PetscFunctionBegin;
123499cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
123599cafbc1SBarry Smith   PetscFunctionReturn(0);
123699cafbc1SBarry Smith }
123799cafbc1SBarry Smith 
123899cafbc1SBarry Smith #undef __FUNCT__
123999cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqSBAIJ"
124099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A)
124199cafbc1SBarry Smith {
124299cafbc1SBarry Smith   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
124399cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
124499cafbc1SBarry Smith   PetscScalar    *aa = a->a;
124599cafbc1SBarry Smith 
124699cafbc1SBarry Smith   PetscFunctionBegin;
124799cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
124899cafbc1SBarry Smith   PetscFunctionReturn(0);
124999cafbc1SBarry Smith }
125099cafbc1SBarry Smith 
125149b5e25fSSatish Balay /* -------------------------------------------------------------------*/
125249b5e25fSSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
125349b5e25fSSatish Balay        MatGetRow_SeqSBAIJ,
125449b5e25fSSatish Balay        MatRestoreRow_SeqSBAIJ,
125549b5e25fSSatish Balay        MatMult_SeqSBAIJ_N,
125697304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N,
1257431c96f7SBarry Smith        MatMult_SeqSBAIJ_N,       /* transpose versions are same as non-transpose versions */
1258e005ede5SBarry Smith        MatMultAdd_SeqSBAIJ_N,
125949b5e25fSSatish Balay        MatSolve_SeqSBAIJ_N,
126049b5e25fSSatish Balay        0,
126149b5e25fSSatish Balay        0,
126297304618SKris Buschelman /*10*/ 0,
126349b5e25fSSatish Balay        0,
12645f4ef2deSHong Zhang        MatCholeskyFactor_SeqSBAIJ,
1265d06b337dSHong Zhang        MatRelax_SeqSBAIJ,
126649b5e25fSSatish Balay        MatTranspose_SeqSBAIJ,
126797304618SKris Buschelman /*15*/ MatGetInfo_SeqSBAIJ,
126849b5e25fSSatish Balay        MatEqual_SeqSBAIJ,
126949b5e25fSSatish Balay        MatGetDiagonal_SeqSBAIJ,
127049b5e25fSSatish Balay        MatDiagonalScale_SeqSBAIJ,
127149b5e25fSSatish Balay        MatNorm_SeqSBAIJ,
127297304618SKris Buschelman /*20*/ 0,
127349b5e25fSSatish Balay        MatAssemblyEnd_SeqSBAIJ,
127449b5e25fSSatish Balay        0,
127549b5e25fSSatish Balay        MatSetOption_SeqSBAIJ,
127649b5e25fSSatish Balay        MatZeroEntries_SeqSBAIJ,
1277dcf5cc72SBarry Smith /*25*/ 0,
127849b5e25fSSatish Balay        0,
127949b5e25fSSatish Balay        0,
12805f4ef2deSHong Zhang        MatCholeskyFactorSymbolic_SeqSBAIJ,
12815f4ef2deSHong Zhang        MatCholeskyFactorNumeric_SeqSBAIJ_N,
128297304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqSBAIJ,
1283c464158bSHong Zhang        0,
12844d101231SSatish Balay        MatICCFactorSymbolic_SeqSBAIJ,
1285a6ece127SHong Zhang        MatGetArray_SeqSBAIJ,
1286a6ece127SHong Zhang        MatRestoreArray_SeqSBAIJ,
128797304618SKris Buschelman /*35*/ MatDuplicate_SeqSBAIJ,
128849b5e25fSSatish Balay        0,
128949b5e25fSSatish Balay        0,
129049b5e25fSSatish Balay        0,
1291950f1e5bSHong Zhang        0,
129297304618SKris Buschelman /*40*/ MatAXPY_SeqSBAIJ,
129349b5e25fSSatish Balay        MatGetSubMatrices_SeqSBAIJ,
129449b5e25fSSatish Balay        MatIncreaseOverlap_SeqSBAIJ,
129549b5e25fSSatish Balay        MatGetValues_SeqSBAIJ,
12963c896bc6SHong Zhang        MatCopy_SeqSBAIJ,
129797304618SKris Buschelman /*45*/ MatPrintHelp_SeqSBAIJ,
129849b5e25fSSatish Balay        MatScale_SeqSBAIJ,
129949b5e25fSSatish Balay        0,
130049b5e25fSSatish Balay        0,
130149b5e25fSSatish Balay        0,
1302521d7252SBarry Smith /*50*/ 0,
130349b5e25fSSatish Balay        MatGetRowIJ_SeqSBAIJ,
130449b5e25fSSatish Balay        MatRestoreRowIJ_SeqSBAIJ,
130549b5e25fSSatish Balay        0,
130649b5e25fSSatish Balay        0,
130797304618SKris Buschelman /*55*/ 0,
130849b5e25fSSatish Balay        0,
130949b5e25fSSatish Balay        0,
131049b5e25fSSatish Balay        0,
131149b5e25fSSatish Balay        MatSetValuesBlocked_SeqSBAIJ,
131297304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqSBAIJ,
131349b5e25fSSatish Balay        0,
131449b5e25fSSatish Balay        0,
1315357abbc8SBarry Smith        0,
1316d959ec07SHong Zhang        0,
131797304618SKris Buschelman /*65*/ 0,
1318d959ec07SHong Zhang        0,
1319d959ec07SHong Zhang        0,
1320d959ec07SHong Zhang        0,
1321d959ec07SHong Zhang        0,
132297304618SKris Buschelman /*70*/ MatGetRowMax_SeqSBAIJ,
13233e0d88b5SBarry Smith        0,
13243e0d88b5SBarry Smith        0,
13253e0d88b5SBarry Smith        0,
13263e0d88b5SBarry Smith        0,
132797304618SKris Buschelman /*75*/ 0,
13283e0d88b5SBarry Smith        0,
13293e0d88b5SBarry Smith        0,
13303e0d88b5SBarry Smith        0,
13313e0d88b5SBarry Smith        0,
133297304618SKris Buschelman /*80*/ 0,
13333e0d88b5SBarry Smith        0,
13343e0d88b5SBarry Smith        0,
13353e0d88b5SBarry Smith #if !defined(PETSC_USE_COMPLEX)
133697304618SKris Buschelman        MatGetInertia_SeqSBAIJ,
13373e0d88b5SBarry Smith #else
133897304618SKris Buschelman        0,
13393e0d88b5SBarry Smith #endif
1340865e5f61SKris Buschelman        MatLoad_SeqSBAIJ,
1341865e5f61SKris Buschelman /*85*/ MatIsSymmetric_SeqSBAIJ,
1342865e5f61SKris Buschelman        MatIsHermitian_SeqSBAIJ,
1343efcf0fc3SBarry Smith        MatIsStructurallySymmetric_SeqSBAIJ,
1344865e5f61SKris Buschelman        0,
1345865e5f61SKris Buschelman        0,
1346865e5f61SKris Buschelman /*90*/ 0,
1347865e5f61SKris Buschelman        0,
1348865e5f61SKris Buschelman        0,
1349865e5f61SKris Buschelman        0,
1350865e5f61SKris Buschelman        0,
1351865e5f61SKris Buschelman /*95*/ 0,
1352865e5f61SKris Buschelman        0,
1353865e5f61SKris Buschelman        0,
135499cafbc1SBarry Smith        0,
135599cafbc1SBarry Smith        0,
135699cafbc1SBarry Smith /*100*/0,
135799cafbc1SBarry Smith        0,
135899cafbc1SBarry Smith        0,
135999cafbc1SBarry Smith        0,
136099cafbc1SBarry Smith        0,
136199cafbc1SBarry Smith /*105*/0,
136299cafbc1SBarry Smith        MatRealPart_SeqSBAIJ,
1363f5edf698SHong Zhang        MatImaginaryPart_SeqSBAIJ,
1364f5edf698SHong Zhang        MatGetRowUpperTriangular_SeqSBAIJ,
1365f5edf698SHong Zhang        MatRestoreRowUpperTriangular_SeqSBAIJ
136699cafbc1SBarry Smith };
1367be1d678aSKris Buschelman 
136849b5e25fSSatish Balay EXTERN_C_BEGIN
13694a2ae208SSatish Balay #undef __FUNCT__
13704a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ"
1371be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqSBAIJ(Mat mat)
137249b5e25fSSatish Balay {
13734afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ *)mat->data;
1374899cda47SBarry Smith   PetscInt       nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2;
1375dfbe8321SBarry Smith   PetscErrorCode ierr;
137649b5e25fSSatish Balay 
137749b5e25fSSatish Balay   PetscFunctionBegin;
137849b5e25fSSatish Balay   if (aij->nonew != 1) {
1379e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
138049b5e25fSSatish Balay   }
138149b5e25fSSatish Balay 
138249b5e25fSSatish Balay   /* allocate space for values if not already there */
138349b5e25fSSatish Balay   if (!aij->saved_values) {
138487828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
138549b5e25fSSatish Balay   }
138649b5e25fSSatish Balay 
138749b5e25fSSatish Balay   /* copy values over */
138887828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
138949b5e25fSSatish Balay   PetscFunctionReturn(0);
139049b5e25fSSatish Balay }
139149b5e25fSSatish Balay EXTERN_C_END
139249b5e25fSSatish Balay 
139349b5e25fSSatish Balay EXTERN_C_BEGIN
13944a2ae208SSatish Balay #undef __FUNCT__
13954a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ"
1396be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqSBAIJ(Mat mat)
139749b5e25fSSatish Balay {
13984afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ *)mat->data;
13996849ba73SBarry Smith   PetscErrorCode ierr;
1400899cda47SBarry Smith   PetscInt       nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2;
140149b5e25fSSatish Balay 
140249b5e25fSSatish Balay   PetscFunctionBegin;
140349b5e25fSSatish Balay   if (aij->nonew != 1) {
1404e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
140549b5e25fSSatish Balay   }
140649b5e25fSSatish Balay   if (!aij->saved_values) {
1407e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
140849b5e25fSSatish Balay   }
140949b5e25fSSatish Balay 
141049b5e25fSSatish Balay   /* copy values over */
141187828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
141249b5e25fSSatish Balay   PetscFunctionReturn(0);
141349b5e25fSSatish Balay }
141449b5e25fSSatish Balay EXTERN_C_END
141549b5e25fSSatish Balay 
14168549e402SHong Zhang EXTERN_C_BEGIN
14174a2ae208SSatish Balay #undef __FUNCT__
1418a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ"
1419be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
142049b5e25fSSatish Balay {
1421c464158bSHong Zhang   Mat_SeqSBAIJ   *b = (Mat_SeqSBAIJ*)B->data;
14226849ba73SBarry Smith   PetscErrorCode ierr;
1423ab93d7beSBarry Smith   PetscInt       i,mbs,bs2;
1424ab93d7beSBarry Smith   PetscTruth     skipallocation = PETSC_FALSE,flg;
142549b5e25fSSatish Balay 
142649b5e25fSSatish Balay   PetscFunctionBegin;
1427273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1428e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1429899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
1430899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
1431899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
1432899cda47SBarry Smith 
1433899cda47SBarry Smith   mbs  = B->rmap.N/bs;
143449b5e25fSSatish Balay   bs2  = bs*bs;
143549b5e25fSSatish Balay 
1436899cda47SBarry Smith   if (mbs*bs != B->rmap.N) {
143729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize");
143849b5e25fSSatish Balay   }
143949b5e25fSSatish Balay 
1440ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
1441ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
1442ab93d7beSBarry Smith     nz             = 0;
1443ab93d7beSBarry Smith   }
1444ab93d7beSBarry Smith 
1445435da068SBarry Smith   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
144677431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
144749b5e25fSSatish Balay   if (nnz) {
144849b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
144977431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
145077431f27SBarry Smith       if (nnz[i] > mbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],mbs);
145149b5e25fSSatish Balay     }
145249b5e25fSSatish Balay   }
145349b5e25fSSatish Balay 
1454e82a3eeeSBarry Smith   ierr    = PetscOptionsHasName(B->prefix,"-mat_no_unroll",&flg);CHKERRQ(ierr);
145549b5e25fSSatish Balay   if (!flg) {
145649b5e25fSSatish Balay     switch (bs) {
145749b5e25fSSatish Balay     case 1:
14584ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1;
145949b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_1;
1460d59c15a7SBarry Smith       B->ops->solves           = MatSolves_SeqSBAIJ_1;
1461e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_1;
146249b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_1;
146349b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_1;
1464431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_1;
1465431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1;
146649b5e25fSSatish Balay       break;
146749b5e25fSSatish Balay     case 2:
14684ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
146949b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_2;
1470e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_2;
147149b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_2;
147249b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_2;
1473431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_2;
1474431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2;
147549b5e25fSSatish Balay       break;
147649b5e25fSSatish Balay     case 3:
14775f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
147849b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_3;
1479e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_3;
148049b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_3;
148149b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_3;
1482431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_3;
1483431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3;
148449b5e25fSSatish Balay       break;
148549b5e25fSSatish Balay     case 4:
14865f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
148749b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_4;
1488e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_4;
148949b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_4;
149049b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_4;
1491431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_4;
1492431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4;
149349b5e25fSSatish Balay       break;
149449b5e25fSSatish Balay     case 5:
14955f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
149649b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_5;
1497e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_5;
149849b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_5;
149949b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_5;
1500431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_5;
1501431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5;
150249b5e25fSSatish Balay       break;
150349b5e25fSSatish Balay     case 6:
15045f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
150549b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_6;
1506e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_6;
150749b5e25fSSatish Balay       B->ops->mult             = MatMult_SeqSBAIJ_6;
150849b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_6;
1509431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_6;
1510431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6;
151149b5e25fSSatish Balay       break;
151249b5e25fSSatish Balay     case 7:
1513de53e5efSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
151449b5e25fSSatish Balay       B->ops->solve            = MatSolve_SeqSBAIJ_7;
1515e005ede5SBarry Smith       B->ops->solvetranspose   = MatSolve_SeqSBAIJ_7;
1516de53e5efSHong Zhang       B->ops->mult             = MatMult_SeqSBAIJ_7;
151749b5e25fSSatish Balay       B->ops->multadd          = MatMultAdd_SeqSBAIJ_7;
1518431c96f7SBarry Smith       B->ops->multtranspose    = MatMult_SeqSBAIJ_7;
1519431c96f7SBarry Smith       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7;
152049b5e25fSSatish Balay       break;
152149b5e25fSSatish Balay     }
152249b5e25fSSatish Balay   }
152349b5e25fSSatish Balay 
152449b5e25fSSatish Balay   b->mbs = mbs;
15254afc71dfSHong Zhang   b->nbs = mbs;
1526ab93d7beSBarry Smith   if (!skipallocation) {
1527ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
1528ab93d7beSBarry Smith     ierr   = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
1529ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
153049b5e25fSSatish Balay     if (!nnz) {
1531435da068SBarry Smith       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
153249b5e25fSSatish Balay       else if (nz <= 0)        nz = 1;
153349b5e25fSSatish Balay       for (i=0; i<mbs; i++) {
15348cef66ccSHong Zhang         b->imax[i] = nz;
153549b5e25fSSatish Balay       }
1536153ea458SHong Zhang       nz = nz*mbs; /* total nz */
153749b5e25fSSatish Balay     } else {
153849b5e25fSSatish Balay       nz = 0;
15398cef66ccSHong Zhang       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
154049b5e25fSSatish Balay     }
15416c6c5352SBarry Smith     /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */
154249b5e25fSSatish Balay 
154349b5e25fSSatish Balay     /* allocate the matrix space */
1544899cda47SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap.N+1,PetscInt,&b->i);CHKERRQ(ierr);
15456c6c5352SBarry Smith     ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
154613f74950SBarry Smith     ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
154749b5e25fSSatish Balay     b->singlemalloc = PETSC_TRUE;
154849b5e25fSSatish Balay 
154949b5e25fSSatish Balay     /* pointer to beginning of each row */
155049b5e25fSSatish Balay     b->i[0] = 0;
155149b5e25fSSatish Balay     for (i=1; i<mbs+1; i++) {
155249b5e25fSSatish Balay       b->i[i] = b->i[i-1] + b->imax[i-1];
155349b5e25fSSatish Balay     }
1554ab93d7beSBarry Smith   }
155549b5e25fSSatish Balay 
1556899cda47SBarry Smith   B->rmap.bs               = bs;
155749b5e25fSSatish Balay   b->bs2              = bs2;
15586c6c5352SBarry Smith   b->nz             = 0;
15596c6c5352SBarry Smith   b->maxnz          = nz*bs2;
1560153ea458SHong Zhang 
156116cdd363SHong Zhang   b->inew             = 0;
156216cdd363SHong Zhang   b->jnew             = 0;
156316cdd363SHong Zhang   b->anew             = 0;
156416cdd363SHong Zhang   b->a2anew           = 0;
15651a3463dfSHong Zhang   b->permute          = PETSC_FALSE;
1566c464158bSHong Zhang   PetscFunctionReturn(0);
1567c464158bSHong Zhang }
1568a23d5eceSKris Buschelman EXTERN_C_END
1569153ea458SHong Zhang 
1570d769727bSBarry Smith EXTERN_C_BEGIN
1571f69a0ea3SMatthew Knepley EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
1572f69a0ea3SMatthew Knepley EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType,MatReuse,Mat*);
1573d769727bSBarry Smith EXTERN_C_END
1574d769727bSBarry Smith 
15750bad9183SKris Buschelman /*MC
1576fafad747SKris Buschelman   MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
15770bad9183SKris Buschelman   based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15780bad9183SKris Buschelman 
15790bad9183SKris Buschelman   Options Database Keys:
15800bad9183SKris Buschelman   . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions()
15810bad9183SKris Buschelman 
15820bad9183SKris Buschelman   Level: beginner
15830bad9183SKris Buschelman 
15840bad9183SKris Buschelman   .seealso: MatCreateSeqSBAIJ
15850bad9183SKris Buschelman M*/
15860bad9183SKris Buschelman 
1587a23d5eceSKris Buschelman EXTERN_C_BEGIN
1588a23d5eceSKris Buschelman #undef __FUNCT__
1589a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ"
1590be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqSBAIJ(Mat B)
1591a23d5eceSKris Buschelman {
1592a23d5eceSKris Buschelman   Mat_SeqSBAIJ   *b;
1593dfbe8321SBarry Smith   PetscErrorCode ierr;
159413f74950SBarry Smith   PetscMPIInt    size;
1595941593c8SHong Zhang   PetscTruth     flg;
1596a23d5eceSKris Buschelman 
1597a23d5eceSKris Buschelman   PetscFunctionBegin;
1598a23d5eceSKris Buschelman   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
1599a23d5eceSKris Buschelman   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
1600a23d5eceSKris Buschelman 
1601a23d5eceSKris Buschelman   ierr    = PetscNew(Mat_SeqSBAIJ,&b);CHKERRQ(ierr);
1602a23d5eceSKris Buschelman   B->data = (void*)b;
1603a23d5eceSKris Buschelman   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1604a23d5eceSKris Buschelman   B->ops->destroy     = MatDestroy_SeqSBAIJ;
1605a23d5eceSKris Buschelman   B->ops->view        = MatView_SeqSBAIJ;
1606a23d5eceSKris Buschelman   B->factor           = 0;
1607a23d5eceSKris Buschelman   B->mapping          = 0;
1608a23d5eceSKris Buschelman   b->row              = 0;
1609a23d5eceSKris Buschelman   b->icol             = 0;
1610a23d5eceSKris Buschelman   b->reallocs         = 0;
1611a23d5eceSKris Buschelman   b->saved_values     = 0;
1612a23d5eceSKris Buschelman 
1613a23d5eceSKris Buschelman 
1614a23d5eceSKris Buschelman   b->sorted           = PETSC_FALSE;
1615a23d5eceSKris Buschelman   b->roworiented      = PETSC_TRUE;
1616a23d5eceSKris Buschelman   b->nonew            = 0;
1617a23d5eceSKris Buschelman   b->diag             = 0;
1618a23d5eceSKris Buschelman   b->solve_work       = 0;
1619a23d5eceSKris Buschelman   b->mult_work        = 0;
1620a23d5eceSKris Buschelman   B->spptr            = 0;
1621a23d5eceSKris Buschelman   b->keepzeroedrows   = PETSC_FALSE;
1622a23d5eceSKris Buschelman   b->xtoy             = 0;
1623a23d5eceSKris Buschelman   b->XtoY             = 0;
1624a23d5eceSKris Buschelman 
1625a23d5eceSKris Buschelman   b->inew             = 0;
1626a23d5eceSKris Buschelman   b->jnew             = 0;
1627a23d5eceSKris Buschelman   b->anew             = 0;
1628a23d5eceSKris Buschelman   b->a2anew           = 0;
1629a23d5eceSKris Buschelman   b->permute          = PETSC_FALSE;
1630a23d5eceSKris Buschelman 
1631941593c8SHong Zhang   b->ignore_ltriangular = PETSC_FALSE;
1632941593c8SHong Zhang   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_ignore_lower_triangular",&flg);CHKERRQ(ierr);
1633941593c8SHong Zhang   if (flg) b->ignore_ltriangular = PETSC_TRUE;
1634941593c8SHong Zhang 
1635f5edf698SHong Zhang   b->getrow_utriangular = PETSC_FALSE;
1636f5edf698SHong Zhang   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_getrow_uppertriangular",&flg);CHKERRQ(ierr);
1637f5edf698SHong Zhang   if (flg) b->getrow_utriangular = PETSC_TRUE;
1638f5edf698SHong Zhang 
1639a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1640a23d5eceSKris Buschelman                                      "MatStoreValues_SeqSBAIJ",
1641a23d5eceSKris Buschelman                                      MatStoreValues_SeqSBAIJ);CHKERRQ(ierr);
1642a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1643a23d5eceSKris Buschelman                                      "MatRetrieveValues_SeqSBAIJ",
1644a23d5eceSKris Buschelman                                      (void*)MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr);
1645a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",
1646a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetColumnIndices_SeqSBAIJ",
1647a23d5eceSKris Buschelman                                      MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr);
16484e5e7fe4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",
16494e5e7fe4SHong Zhang                                      "MatConvert_SeqSBAIJ_SeqAIJ",
16504e5e7fe4SHong Zhang                                       MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr);
1651a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",
1652a0e1a404SHong Zhang                                      "MatConvert_SeqSBAIJ_SeqBAIJ",
1653a0e1a404SHong Zhang                                       MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr);
1654a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",
1655a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetPreallocation_SeqSBAIJ",
1656a23d5eceSKris Buschelman                                      MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr);
165723ce1328SBarry Smith 
165823ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
165923ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
166023ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
166123ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1662a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1663a23d5eceSKris Buschelman }
1664a23d5eceSKris Buschelman EXTERN_C_END
1665a23d5eceSKris Buschelman 
1666a23d5eceSKris Buschelman #undef __FUNCT__
1667a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation"
1668a23d5eceSKris Buschelman /*@C
1669a23d5eceSKris Buschelman    MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
1670a23d5eceSKris Buschelman    compressed row) format.  For good matrix assembly performance the
1671a23d5eceSKris Buschelman    user should preallocate the matrix storage by setting the parameter nz
1672a23d5eceSKris Buschelman    (or the array nnz).  By setting these parameters accurately, performance
1673a23d5eceSKris Buschelman    during matrix assembly can be increased by more than a factor of 50.
1674a23d5eceSKris Buschelman 
1675a23d5eceSKris Buschelman    Collective on Mat
1676a23d5eceSKris Buschelman 
1677a23d5eceSKris Buschelman    Input Parameters:
1678a23d5eceSKris Buschelman +  A - the symmetric matrix
1679a23d5eceSKris Buschelman .  bs - size of block
1680a23d5eceSKris Buschelman .  nz - number of block nonzeros per block row (same for all rows)
1681a23d5eceSKris Buschelman -  nnz - array containing the number of block nonzeros in the upper triangular plus
1682a23d5eceSKris Buschelman          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1683a23d5eceSKris Buschelman 
1684a23d5eceSKris Buschelman    Options Database Keys:
1685a23d5eceSKris Buschelman .   -mat_no_unroll - uses code that does not unroll the loops in the
1686a23d5eceSKris Buschelman                      block calculations (much slower)
1687a23d5eceSKris Buschelman .    -mat_block_size - size of the blocks to use
1688a23d5eceSKris Buschelman 
1689a23d5eceSKris Buschelman    Level: intermediate
1690a23d5eceSKris Buschelman 
1691a23d5eceSKris Buschelman    Notes:
1692a23d5eceSKris Buschelman    Specify the preallocated storage with either nz or nnz (not both).
1693a23d5eceSKris Buschelman    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1694a23d5eceSKris Buschelman    allocation.  For additional details, see the users manual chapter on
1695a23d5eceSKris Buschelman    matrices.
1696a23d5eceSKris Buschelman 
169749a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
169849a6f317SBarry Smith 
169949a6f317SBarry Smith 
1700a23d5eceSKris Buschelman .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1701a23d5eceSKris Buschelman @*/
1702be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
170313f74950SBarry Smith {
170413f74950SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
1705a23d5eceSKris Buschelman 
1706a23d5eceSKris Buschelman   PetscFunctionBegin;
1707a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1708a23d5eceSKris Buschelman   if (f) {
1709a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
1710a23d5eceSKris Buschelman   }
1711a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1712a23d5eceSKris Buschelman }
171349b5e25fSSatish Balay 
17144a2ae208SSatish Balay #undef __FUNCT__
17154a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ"
1716c464158bSHong Zhang /*@C
1717c464158bSHong Zhang    MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block
1718c464158bSHong Zhang    compressed row) format.  For good matrix assembly performance the
1719c464158bSHong Zhang    user should preallocate the matrix storage by setting the parameter nz
1720c464158bSHong Zhang    (or the array nnz).  By setting these parameters accurately, performance
1721c464158bSHong Zhang    during matrix assembly can be increased by more than a factor of 50.
172249b5e25fSSatish Balay 
1723c464158bSHong Zhang    Collective on MPI_Comm
1724c464158bSHong Zhang 
1725c464158bSHong Zhang    Input Parameters:
1726c464158bSHong Zhang +  comm - MPI communicator, set to PETSC_COMM_SELF
1727c464158bSHong Zhang .  bs - size of block
1728c464158bSHong Zhang .  m - number of rows, or number of columns
1729c464158bSHong Zhang .  nz - number of block nonzeros per block row (same for all rows)
1730744e8345SSatish Balay -  nnz - array containing the number of block nonzeros in the upper triangular plus
1731744e8345SSatish Balay          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1732c464158bSHong Zhang 
1733c464158bSHong Zhang    Output Parameter:
1734c464158bSHong Zhang .  A - the symmetric matrix
1735c464158bSHong Zhang 
1736c464158bSHong Zhang    Options Database Keys:
1737c464158bSHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1738c464158bSHong Zhang                      block calculations (much slower)
1739c464158bSHong Zhang .    -mat_block_size - size of the blocks to use
1740c464158bSHong Zhang 
1741c464158bSHong Zhang    Level: intermediate
1742c464158bSHong Zhang 
1743c464158bSHong Zhang    Notes:
1744c464158bSHong Zhang 
1745c464158bSHong Zhang    Specify the preallocated storage with either nz or nnz (not both).
1746c464158bSHong Zhang    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1747c464158bSHong Zhang    allocation.  For additional details, see the users manual chapter on
1748c464158bSHong Zhang    matrices.
1749c464158bSHong Zhang 
175049a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
175149a6f317SBarry Smith 
1752c464158bSHong Zhang .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1753c464158bSHong Zhang @*/
1754be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
1755c464158bSHong Zhang {
1756dfbe8321SBarry Smith   PetscErrorCode ierr;
1757c464158bSHong Zhang 
1758c464158bSHong Zhang   PetscFunctionBegin;
1759f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1760f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
1761c464158bSHong Zhang   ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1762ab93d7beSBarry Smith   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
176349b5e25fSSatish Balay   PetscFunctionReturn(0);
176449b5e25fSSatish Balay }
176549b5e25fSSatish Balay 
17664a2ae208SSatish Balay #undef __FUNCT__
17674a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ"
1768dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
176949b5e25fSSatish Balay {
177049b5e25fSSatish Balay   Mat            C;
177149b5e25fSSatish Balay   Mat_SeqSBAIJ   *c,*a = (Mat_SeqSBAIJ*)A->data;
17726849ba73SBarry Smith   PetscErrorCode ierr;
1773b40805acSSatish Balay   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
177449b5e25fSSatish Balay 
177549b5e25fSSatish Balay   PetscFunctionBegin;
177629bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
177749b5e25fSSatish Balay 
177849b5e25fSSatish Balay   *B = 0;
1779f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&C);CHKERRQ(ierr);
1780899cda47SBarry Smith   ierr = MatSetSizes(C,A->rmap.N,A->cmap.n,A->rmap.N,A->cmap.n);CHKERRQ(ierr);
1781be5d1d56SKris Buschelman   ierr = MatSetType(C,A->type_name);CHKERRQ(ierr);
17821d5dac46SHong Zhang   ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1783692f9cbeSHong Zhang   c    = (Mat_SeqSBAIJ*)C->data;
1784692f9cbeSHong Zhang 
1785273d9f13SBarry Smith   C->preallocated   = PETSC_TRUE;
178649b5e25fSSatish Balay   C->factor         = A->factor;
178749b5e25fSSatish Balay   c->row            = 0;
178849b5e25fSSatish Balay   c->icol           = 0;
178949b5e25fSSatish Balay   c->saved_values   = 0;
179049b5e25fSSatish Balay   c->keepzeroedrows = a->keepzeroedrows;
179149b5e25fSSatish Balay   C->assembled      = PETSC_TRUE;
179249b5e25fSSatish Balay 
1793899cda47SBarry Smith   ierr = PetscMapCopy(A->comm,&A->rmap,&C->rmap);CHKERRQ(ierr);
1794899cda47SBarry Smith   ierr = PetscMapCopy(A->comm,&A->cmap,&C->cmap);CHKERRQ(ierr);
179549b5e25fSSatish Balay   c->bs2  = a->bs2;
179649b5e25fSSatish Balay   c->mbs  = a->mbs;
179749b5e25fSSatish Balay   c->nbs  = a->nbs;
179849b5e25fSSatish Balay 
179913f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->imax);CHKERRQ(ierr);
180013f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->ilen);CHKERRQ(ierr);
180149b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
180249b5e25fSSatish Balay     c->imax[i] = a->imax[i];
180349b5e25fSSatish Balay     c->ilen[i] = a->ilen[i];
180449b5e25fSSatish Balay   }
180549b5e25fSSatish Balay 
180649b5e25fSSatish Balay   /* allocate the matrix space */
1807b40805acSSatish Balay   ierr = PetscMalloc3(bs2*nz,MatScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
180849b5e25fSSatish Balay   c->singlemalloc = PETSC_TRUE;
180913f74950SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1810b40805acSSatish Balay   ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));CHKERRQ(ierr);
181149b5e25fSSatish Balay   if (mbs > 0) {
181213f74950SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
181349b5e25fSSatish Balay     if (cpvalues == MAT_COPY_VALUES) {
181449b5e25fSSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
181549b5e25fSSatish Balay     } else {
181649b5e25fSSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
181749b5e25fSSatish Balay     }
181849b5e25fSSatish Balay   }
181949b5e25fSSatish Balay 
182049b5e25fSSatish Balay   c->sorted      = a->sorted;
182149b5e25fSSatish Balay   c->roworiented = a->roworiented;
182249b5e25fSSatish Balay   c->nonew       = a->nonew;
182349b5e25fSSatish Balay 
182449b5e25fSSatish Balay   if (a->diag) {
182513f74950SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
182652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
182749b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
182849b5e25fSSatish Balay       c->diag[i] = a->diag[i];
182949b5e25fSSatish Balay     }
183049b5e25fSSatish Balay   } else c->diag        = 0;
18316c6c5352SBarry Smith   c->nz               = a->nz;
18326c6c5352SBarry Smith   c->maxnz            = a->maxnz;
183349b5e25fSSatish Balay   c->solve_work         = 0;
183449b5e25fSSatish Balay   c->mult_work          = 0;
183549b5e25fSSatish Balay   *B = C;
1836b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(A->qlist,&C->qlist);CHKERRQ(ierr);
183749b5e25fSSatish Balay   PetscFunctionReturn(0);
183849b5e25fSSatish Balay }
183949b5e25fSSatish Balay 
18404a2ae208SSatish Balay #undef __FUNCT__
18414a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqSBAIJ"
1842f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_SeqSBAIJ(PetscViewer viewer, MatType type,Mat *A)
184349b5e25fSSatish Balay {
184449b5e25fSSatish Balay   Mat_SeqSBAIJ   *a;
184549b5e25fSSatish Balay   Mat            B;
18466849ba73SBarry Smith   PetscErrorCode ierr;
184713f74950SBarry Smith   int            fd;
184813f74950SBarry Smith   PetscMPIInt    size;
184913f74950SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
185013f74950SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount;
185113f74950SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
185213f74950SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
185387828ca2SBarry Smith   PetscScalar    *aa;
185449b5e25fSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
185549b5e25fSSatish Balay 
185649b5e25fSSatish Balay   PetscFunctionBegin;
1857b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
185849b5e25fSSatish Balay   bs2  = bs*bs;
185949b5e25fSSatish Balay 
186049b5e25fSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
186129bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
1862b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
186349b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
1864552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
186549b5e25fSSatish Balay   M = header[1]; N = header[2]; nz = header[3];
186649b5e25fSSatish Balay 
186749b5e25fSSatish Balay   if (header[3] < 0) {
186829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ");
186949b5e25fSSatish Balay   }
187049b5e25fSSatish Balay 
187129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
187249b5e25fSSatish Balay 
187349b5e25fSSatish Balay   /*
187449b5e25fSSatish Balay      This code adds extra rows to make sure the number of rows is
187549b5e25fSSatish Balay     divisible by the blocksize
187649b5e25fSSatish Balay   */
187749b5e25fSSatish Balay   mbs        = M/bs;
187849b5e25fSSatish Balay   extra_rows = bs - M + bs*(mbs);
187949b5e25fSSatish Balay   if (extra_rows == bs) extra_rows = 0;
188049b5e25fSSatish Balay   else                  mbs++;
188149b5e25fSSatish Balay   if (extra_rows) {
1882ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
188349b5e25fSSatish Balay   }
188449b5e25fSSatish Balay 
188549b5e25fSSatish Balay   /* read in row lengths */
188613f74950SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
188749b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
188849b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
188949b5e25fSSatish Balay 
189049b5e25fSSatish Balay   /* read in column indices */
189113f74950SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
189249b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
189349b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
189449b5e25fSSatish Balay 
189549b5e25fSSatish Balay   /* loop over row lengths determining block row lengths */
189613f74950SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&s_browlengths);CHKERRQ(ierr);
189713f74950SBarry Smith   ierr     = PetscMemzero(s_browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
189813f74950SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
189913f74950SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
190049b5e25fSSatish Balay   masked   = mask + mbs;
190149b5e25fSSatish Balay   rowcount = 0; nzcount = 0;
190249b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
190349b5e25fSSatish Balay     nmask = 0;
190449b5e25fSSatish Balay     for (j=0; j<bs; j++) {
190549b5e25fSSatish Balay       kmax = rowlengths[rowcount];
190649b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
19072d703238SHong Zhang         tmp = jj[nzcount++]/bs;   /* block col. index */
190803630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;}
190949b5e25fSSatish Balay       }
191049b5e25fSSatish Balay       rowcount++;
191149b5e25fSSatish Balay     }
1912574b2666SHong Zhang     s_browlengths[i] += nmask;
1913574b2666SHong Zhang 
191449b5e25fSSatish Balay     /* zero out the mask elements we set */
191549b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
191649b5e25fSSatish Balay   }
191749b5e25fSSatish Balay 
191849b5e25fSSatish Balay   /* create our matrix */
1919f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B);CHKERRQ(ierr);
1920f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,M+extra_rows,N+extra_rows,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
19219abb65ffSKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
1922ab93d7beSBarry Smith   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(B,bs,0,s_browlengths);CHKERRQ(ierr);
192349b5e25fSSatish Balay   a = (Mat_SeqSBAIJ*)B->data;
192449b5e25fSSatish Balay 
192549b5e25fSSatish Balay   /* set matrix "i" values */
192649b5e25fSSatish Balay   a->i[0] = 0;
192749b5e25fSSatish Balay   for (i=1; i<= mbs; i++) {
1928574b2666SHong Zhang     a->i[i]      = a->i[i-1] + s_browlengths[i-1];
1929574b2666SHong Zhang     a->ilen[i-1] = s_browlengths[i-1];
193049b5e25fSSatish Balay   }
19316c6c5352SBarry Smith   a->nz = a->i[mbs];
193249b5e25fSSatish Balay 
193349b5e25fSSatish Balay   /* read in nonzero values */
193487828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
193549b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
193649b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
193749b5e25fSSatish Balay 
193849b5e25fSSatish Balay   /* set "a" and "j" values into matrix */
193949b5e25fSSatish Balay   nzcount = 0; jcount = 0;
194049b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
194149b5e25fSSatish Balay     nzcountb = nzcount;
194249b5e25fSSatish Balay     nmask    = 0;
194349b5e25fSSatish Balay     for (j=0; j<bs; j++) {
194449b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
194549b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
19462d703238SHong Zhang         tmp = jj[nzcount++]/bs; /* block col. index */
194703630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;}
19482d703238SHong Zhang       }
19492d703238SHong Zhang     }
19502d703238SHong Zhang     /* sort the masked values */
19512d703238SHong Zhang     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
19522d703238SHong Zhang 
19532d703238SHong Zhang     /* set "j" values into matrix */
19542d703238SHong Zhang     maskcount = 1;
19552d703238SHong Zhang     for (j=0; j<nmask; j++) {
195649b5e25fSSatish Balay       a->j[jcount++]  = masked[j];
195749b5e25fSSatish Balay       mask[masked[j]] = maskcount++;
195849b5e25fSSatish Balay     }
1959574b2666SHong Zhang 
196049b5e25fSSatish Balay     /* set "a" values into matrix */
196149b5e25fSSatish Balay     ishift = bs2*a->i[i];
196249b5e25fSSatish Balay     for (j=0; j<bs; j++) {
196349b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
196449b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
1965574b2666SHong Zhang         tmp       = jj[nzcountb]/bs ; /* block col. index */
1966574b2666SHong Zhang         if (tmp >= i){
196749b5e25fSSatish Balay           block     = mask[tmp] - 1;
196849b5e25fSSatish Balay           point     = jj[nzcountb] - bs*tmp;
196949b5e25fSSatish Balay           idx       = ishift + bs2*block + j + bs*point;
1970574b2666SHong Zhang           a->a[idx] = aa[nzcountb];
1971574b2666SHong Zhang         }
1972574b2666SHong Zhang         nzcountb++;
197349b5e25fSSatish Balay       }
197449b5e25fSSatish Balay     }
197549b5e25fSSatish Balay     /* zero out the mask elements we set */
197649b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
197749b5e25fSSatish Balay   }
19786c6c5352SBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
197949b5e25fSSatish Balay 
198049b5e25fSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1981574b2666SHong Zhang   ierr = PetscFree(s_browlengths);CHKERRQ(ierr);
198249b5e25fSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
198349b5e25fSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
198449b5e25fSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
198549b5e25fSSatish Balay 
19869abb65ffSKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19879abb65ffSKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
198849b5e25fSSatish Balay   ierr = MatView_Private(B);CHKERRQ(ierr);
19899abb65ffSKris Buschelman   *A = B;
199049b5e25fSSatish Balay   PetscFunctionReturn(0);
199149b5e25fSSatish Balay }
1992574b2666SHong Zhang 
1993d06b337dSHong Zhang #undef __FUNCT__
1994d06b337dSHong Zhang #define __FUNCT__ "MatRelax_SeqSBAIJ"
199513f74950SBarry Smith PetscErrorCode MatRelax_SeqSBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1996d06b337dSHong Zhang {
1997d06b337dSHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
1998d06b337dSHong Zhang   MatScalar      *aa=a->a,*v,*v1;
1999d06b337dSHong Zhang   PetscScalar    *x,*b,*t,sum,d;
20006849ba73SBarry Smith   PetscErrorCode ierr;
2001899cda47SBarry Smith   PetscInt       m=a->mbs,bs=A->rmap.bs,*ai=a->i,*aj=a->j;
2002521d7252SBarry Smith   PetscInt       nz,nz1,*vj,*vj1,i;
2003d06b337dSHong Zhang 
2004d06b337dSHong Zhang   PetscFunctionBegin;
2005b965ef7fSBarry Smith   its = its*lits;
200677431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
2007d06b337dSHong Zhang 
2008d06b337dSHong Zhang   if (bs > 1)
2009d06b337dSHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
2010d06b337dSHong Zhang 
20111ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2012d06b337dSHong Zhang   if (xx != bb) {
20131ebc52fbSHong Zhang     ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
2014d06b337dSHong Zhang   } else {
2015d06b337dSHong Zhang     b = x;
2016d06b337dSHong Zhang   }
2017d06b337dSHong Zhang 
2018d06b337dSHong Zhang   ierr = PetscMalloc(m*sizeof(PetscScalar),&t);CHKERRQ(ierr);
2019d06b337dSHong Zhang 
2020d06b337dSHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
20212798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
2022d06b337dSHong Zhang       for (i=0; i<m; i++)
2023d06b337dSHong Zhang         t[i] = b[i];
2024d06b337dSHong Zhang 
2025d06b337dSHong Zhang       for (i=0; i<m; i++){
202644706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
2027d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2028d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2029d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2030d06b337dSHong Zhang         x[i] = omega*t[i]/d;
2031d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++); /* update rhs */
2032efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2033d06b337dSHong Zhang       }
2034d06b337dSHong Zhang     }
2035d06b337dSHong Zhang 
20362798e883SHong Zhang     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
2037d06b337dSHong Zhang       for (i=0; i<m; i++)
2038d06b337dSHong Zhang         t[i] = b[i];
2039d06b337dSHong Zhang 
2040d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2041d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2042d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2043d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2044d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2045efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2046d06b337dSHong Zhang       }
2047d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2048d06b337dSHong Zhang         d  = *(aa + ai[i]);
2049d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2050d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2051d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2052d06b337dSHong Zhang         sum = t[i];
2053d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
2054efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2055d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2056d06b337dSHong Zhang       }
2057d06b337dSHong Zhang     }
2058d06b337dSHong Zhang     its--;
2059d06b337dSHong Zhang   }
2060d06b337dSHong Zhang 
2061d06b337dSHong Zhang   while (its--) {
206244706875SHong Zhang     /*
206344706875SHong Zhang        forward sweep:
206444706875SHong Zhang        for i=0,...,m-1:
206544706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
206644706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
206744706875SHong Zhang          b      = b - x[i]*U^T(i,:);
2068d06b337dSHong Zhang 
206944706875SHong Zhang     */
20702798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
2071d06b337dSHong Zhang       for (i=0; i<m; i++)
2072d06b337dSHong Zhang         t[i] = b[i];
2073d06b337dSHong Zhang 
2074d06b337dSHong Zhang       for (i=0; i<m; i++){
207544706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
2076d06b337dSHong Zhang         v  = aa + ai[i] + 1; v1=v;
2077d06b337dSHong Zhang         vj = aj + ai[i] + 1; vj1=vj;
2078d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1; nz1=nz;
2079d06b337dSHong Zhang         sum = t[i];
2080d06b337dSHong Zhang         while (nz1--) sum -= (*v1++)*x[*vj1++];
2081d06b337dSHong Zhang         x[i] = (1-omega)*x[i] + omega*sum/d;
2082d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2083efee365bSSatish Balay         ierr = PetscLogFlops(4*nz-2);CHKERRQ(ierr);
2084d06b337dSHong Zhang       }
2085d06b337dSHong Zhang     }
2086d06b337dSHong Zhang 
20872798e883SHong Zhang   if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
208844706875SHong Zhang       /*
208944706875SHong Zhang        backward sweep:
209044706875SHong Zhang        b = b - x[i]*U^T(i,:), i=0,...,n-2
209144706875SHong Zhang        for i=m-1,...,0:
209244706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
209344706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
209444706875SHong Zhang       */
2095d06b337dSHong Zhang       for (i=0; i<m; i++)
2096d06b337dSHong Zhang         t[i] = b[i];
2097d06b337dSHong Zhang 
2098d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2099d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2100d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2101d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2102d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2103efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2104d06b337dSHong Zhang       }
2105d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2106d06b337dSHong Zhang         d  = *(aa + ai[i]);
2107d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2108d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2109d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2110d06b337dSHong Zhang         sum = t[i];
2111d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
2112efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2113d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2114d06b337dSHong Zhang       }
2115d06b337dSHong Zhang     }
2116d06b337dSHong Zhang   }
2117d06b337dSHong Zhang 
2118d06b337dSHong Zhang   ierr = PetscFree(t);CHKERRQ(ierr);
21191ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2120d06b337dSHong Zhang   if (bb != xx) {
21211ebc52fbSHong Zhang     ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2122d06b337dSHong Zhang   }
2123d06b337dSHong Zhang   PetscFunctionReturn(0);
2124d06b337dSHong Zhang }
2125d06b337dSHong Zhang 
2126d06b337dSHong Zhang 
2127d06b337dSHong Zhang 
2128d06b337dSHong Zhang 
212949b5e25fSSatish Balay 
213049b5e25fSSatish Balay 
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