149b5e25fSSatish Balay 249b5e25fSSatish Balay /* 3a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 449b5e25fSSatish Balay matrix storage format. 549b5e25fSSatish Balay */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h> 8c6db04a5SJed Brown #include <petscblaslapack.h> 949b5e25fSSatish Balay 10c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1170dcbbb9SBarry Smith #define USESHORT 12c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/relax.h> 1370dcbbb9SBarry Smith 14ace3abfcSBarry Smith extern PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat,PetscBool); 15b5b17502SBarry Smith 1649b5e25fSSatish Balay /* 1749b5e25fSSatish Balay Checks for missing diagonals 1849b5e25fSSatish Balay */ 194a2ae208SSatish Balay #undef __FUNCT__ 204a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ" 21ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A,PetscBool *missing,PetscInt *dd) 2249b5e25fSSatish Balay { 23045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 246849ba73SBarry Smith PetscErrorCode ierr; 257734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 2649b5e25fSSatish Balay 2749b5e25fSSatish Balay PetscFunctionBegin; 28045c9aa0SHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr); 292af78befSBarry Smith *missing = PETSC_FALSE; 307734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 31358d2f5dSShri Abhyankar *missing = PETSC_TRUE; 32358d2f5dSShri Abhyankar if (dd) *dd = 0; 33358d2f5dSShri Abhyankar PetscInfo(A,"Matrix has no entries therefore is missing diagonal"); 34358d2f5dSShri Abhyankar } else { 35358d2f5dSShri Abhyankar diag = a->diag; 3649b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 377734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 382af78befSBarry Smith *missing = PETSC_TRUE; 392af78befSBarry Smith if (dd) *dd = i; 402af78befSBarry Smith break; 412af78befSBarry Smith } 4249b5e25fSSatish Balay } 43358d2f5dSShri Abhyankar } 4449b5e25fSSatish Balay PetscFunctionReturn(0); 4549b5e25fSSatish Balay } 4649b5e25fSSatish Balay 474a2ae208SSatish Balay #undef __FUNCT__ 484a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ" 49dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A) 5049b5e25fSSatish Balay { 51045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 526849ba73SBarry Smith PetscErrorCode ierr; 5348dd3d27SHong Zhang PetscInt i,j; 5449b5e25fSSatish Balay 5549b5e25fSSatish Balay PetscFunctionBegin; 5609f38230SBarry Smith if (!a->diag) { 57785e854fSJed Brown ierr = PetscMalloc1(a->mbs,&a->diag);CHKERRQ(ierr); 583bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->mbs*sizeof(PetscInt));CHKERRQ(ierr); 59c760cd28SBarry Smith a->free_diag = PETSC_TRUE; 6009f38230SBarry Smith } 6148dd3d27SHong Zhang for (i=0; i<a->mbs; i++) { 6248dd3d27SHong Zhang a->diag[i] = a->i[i+1]; 6348dd3d27SHong Zhang for (j=a->i[i]; j<a->i[i+1]; j++) { 6448dd3d27SHong Zhang if (a->j[j] == i) { 6548dd3d27SHong Zhang a->diag[i] = j; 6648dd3d27SHong Zhang break; 6748dd3d27SHong Zhang } 6848dd3d27SHong Zhang } 6948dd3d27SHong Zhang } 7049b5e25fSSatish Balay PetscFunctionReturn(0); 7149b5e25fSSatish Balay } 7249b5e25fSSatish Balay 734a2ae208SSatish Balay #undef __FUNCT__ 744a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ" 751a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 7649b5e25fSSatish Balay { 77a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 78d0f46423SBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs; 791a83f524SJed Brown PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 808f7157efSSatish Balay PetscErrorCode ierr; 8149b5e25fSSatish Balay 8249b5e25fSSatish Balay PetscFunctionBegin; 83d3e5a4abSHong Zhang *nn = n; 84a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 858f7157efSSatish Balay if (!blockcompressed) { 868f7157efSSatish Balay /* malloc & create the natural set of indices */ 87dcca6d9dSJed Brown ierr = PetscMalloc2((n+1)*bs,ia,nz*bs,ja);CHKERRQ(ierr); 888f7157efSSatish Balay for (i=0; i<n+1; i++) { 898f7157efSSatish Balay for (j=0; j<bs; j++) { 908f7157efSSatish Balay *ia[i*bs+j] = a->i[i]*bs+j+oshift; 918f7157efSSatish Balay } 928f7157efSSatish Balay } 938f7157efSSatish Balay for (i=0; i<nz; i++) { 948f7157efSSatish Balay for (j=0; j<bs; j++) { 958f7157efSSatish Balay *ja[i*bs+j] = a->j[i]*bs+j+oshift; 968f7157efSSatish Balay } 978f7157efSSatish Balay } 988f7157efSSatish Balay } else { /* blockcompressed */ 99a6ece127SHong Zhang if (oshift == 1) { 100a6ece127SHong Zhang /* temporarily add 1 to i and j indices */ 1016c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]++; 102a1373b80SHong Zhang for (i=0; i<n+1; i++) a->i[i]++; 1038f7157efSSatish Balay } 104a1373b80SHong Zhang *ia = a->i; *ja = a->j; 105a6ece127SHong Zhang } 10649b5e25fSSatish Balay PetscFunctionReturn(0); 10749b5e25fSSatish Balay } 10849b5e25fSSatish Balay 1094a2ae208SSatish Balay #undef __FUNCT__ 1104a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ" 1111a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 11249b5e25fSSatish Balay { 113b7aaefc3SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1148f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 1158f7157efSSatish Balay PetscErrorCode ierr; 116a6ece127SHong Zhang 11749b5e25fSSatish Balay PetscFunctionBegin; 11849b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 119a6ece127SHong Zhang 1208f7157efSSatish Balay if (!blockcompressed) { 1218f7157efSSatish Balay ierr = PetscFree2(*ia,*ja);CHKERRQ(ierr); 1228f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 1236c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]--; 124a6ece127SHong Zhang for (i=0; i<n+1; i++) a->i[i]--; 125a6ece127SHong Zhang } 126a6ece127SHong Zhang PetscFunctionReturn(0); 12749b5e25fSSatish Balay } 12849b5e25fSSatish Balay 1294a2ae208SSatish Balay #undef __FUNCT__ 1304a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ" 131dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A) 13249b5e25fSSatish Balay { 13349b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 134dfbe8321SBarry Smith PetscErrorCode ierr; 13549b5e25fSSatish Balay 13649b5e25fSSatish Balay PetscFunctionBegin; 137a9f03627SSatish Balay #if defined(PETSC_USE_LOG) 138d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->rmap->N,a->nz); 139a9f03627SSatish Balay #endif 140e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1417f53bb6cSHong Zhang if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 1426bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1436bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1446bf464f9SBarry Smith ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 145c31cb41cSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 146c31cb41cSBarry Smith ierr = PetscFree(a->inode.size);CHKERRQ(ierr); 147c760cd28SBarry Smith if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 14805b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 14941f059aeSBarry Smith ierr = PetscFree(a->sor_work);CHKERRQ(ierr); 15005b42c5fSBarry Smith ierr = PetscFree(a->solves_work);CHKERRQ(ierr); 15105b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 15205b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 1534da8f245SBarry Smith if (a->free_jshort) {ierr = PetscFree(a->jshort);CHKERRQ(ierr);} 1541a3463dfSHong Zhang ierr = PetscFree(a->inew);CHKERRQ(ierr); 1556bf464f9SBarry Smith ierr = MatDestroy(&a->parent);CHKERRQ(ierr); 156bf0cc555SLisandro Dalcin ierr = PetscFree(A->data);CHKERRQ(ierr); 157901853e0SKris Buschelman 158dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 159bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 160bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 161bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr); 162bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C",NULL);CHKERRQ(ierr); 163bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C",NULL);CHKERRQ(ierr); 164bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 16538f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 166bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqsbstrm_C",NULL);CHKERRQ(ierr); 16749b5e25fSSatish Balay PetscFunctionReturn(0); 16849b5e25fSSatish Balay } 16949b5e25fSSatish Balay 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ" 172ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op,PetscBool flg) 17349b5e25fSSatish Balay { 174045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 17563ba0a88SBarry Smith PetscErrorCode ierr; 17649b5e25fSSatish Balay 17749b5e25fSSatish Balay PetscFunctionBegin; 1784d9d31abSKris Buschelman switch (op) { 1794d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 1804e0d8c25SBarry Smith a->roworiented = flg; 1814d9d31abSKris Buschelman break; 182a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 183a9817697SBarry Smith a->keepnonzeropattern = flg; 1844d9d31abSKris Buschelman break; 185512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 186512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1874d9d31abSKris Buschelman break; 1884d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1894e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1904d9d31abSKris Buschelman break; 1914d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1924e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1934d9d31abSKris Buschelman break; 19428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 19528b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 19628b2fa4aSMatthew Knepley break; 1974e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1984d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1994d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 200290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 2014d9d31abSKris Buschelman break; 2029a4540c5SBarry Smith case MAT_HERMITIAN: 203e32f2f54SBarry Smith if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatAssemblyEnd() first"); 2040bc54ff2SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 205eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian_ushort; 2060bc54ff2SBarry Smith } else if (A->cmap->bs == 1) { 207eeffb40dSHong Zhang A->ops->mult = MatMult_SeqSBAIJ_1_Hermitian; 208e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for Hermitian with block size greater than 1"); 209eeffb40dSHong Zhang break; 2103d472b54SHong Zhang case MAT_SPD: 2115021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 2123d472b54SHong Zhang break; 21377e54ba9SKris Buschelman case MAT_SYMMETRIC: 21477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 2159a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 2164dcd73b1SHong Zhang /* These options are handled directly by MatSetOption() */ 217290bbb0aSBarry Smith break; 218941593c8SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 2194e0d8c25SBarry Smith a->ignore_ltriangular = flg; 220941593c8SHong Zhang break; 221941593c8SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 2224e0d8c25SBarry Smith a->ignore_ltriangular = flg; 22377e54ba9SKris Buschelman break; 224f5edf698SHong Zhang case MAT_GETROW_UPPERTRIANGULAR: 2254e0d8c25SBarry Smith a->getrow_utriangular = flg; 226f5edf698SHong Zhang break; 2274d9d31abSKris Buschelman default: 228e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 22949b5e25fSSatish Balay } 23049b5e25fSSatish Balay PetscFunctionReturn(0); 23149b5e25fSSatish Balay } 23249b5e25fSSatish Balay 2334a2ae208SSatish Balay #undef __FUNCT__ 2344a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ" 23552768537SHong Zhang PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 23649b5e25fSSatish Balay { 23749b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 2386849ba73SBarry Smith PetscErrorCode ierr; 23949b5e25fSSatish Balay 24049b5e25fSSatish Balay PetscFunctionBegin; 241e32f2f54SBarry Smith if (A && !a->getrow_utriangular) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()"); 24252768537SHong Zhang 243f5edf698SHong Zhang /* Get the upper triangular part of the row */ 24452768537SHong Zhang ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr); 24549b5e25fSSatish Balay PetscFunctionReturn(0); 24649b5e25fSSatish Balay } 24749b5e25fSSatish Balay 2484a2ae208SSatish Balay #undef __FUNCT__ 2494a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ" 25013f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 25149b5e25fSSatish Balay { 252dfbe8321SBarry Smith PetscErrorCode ierr; 25349b5e25fSSatish Balay 25449b5e25fSSatish Balay PetscFunctionBegin; 25505b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 25605b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 25749b5e25fSSatish Balay PetscFunctionReturn(0); 25849b5e25fSSatish Balay } 25949b5e25fSSatish Balay 2604a2ae208SSatish Balay #undef __FUNCT__ 261f5edf698SHong Zhang #define __FUNCT__ "MatGetRowUpperTriangular_SeqSBAIJ" 262f5edf698SHong Zhang PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A) 263f5edf698SHong Zhang { 264f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 265f5edf698SHong Zhang 266f5edf698SHong Zhang PetscFunctionBegin; 267f5edf698SHong Zhang a->getrow_utriangular = PETSC_TRUE; 268f5edf698SHong Zhang PetscFunctionReturn(0); 269f5edf698SHong Zhang } 270f5edf698SHong Zhang #undef __FUNCT__ 271f5edf698SHong Zhang #define __FUNCT__ "MatRestoreRowUpperTriangular_SeqSBAIJ" 272f5edf698SHong Zhang PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A) 273f5edf698SHong Zhang { 274f5edf698SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 275f5edf698SHong Zhang 276f5edf698SHong Zhang PetscFunctionBegin; 277f5edf698SHong Zhang a->getrow_utriangular = PETSC_FALSE; 278f5edf698SHong Zhang PetscFunctionReturn(0); 279f5edf698SHong Zhang } 280f5edf698SHong Zhang 281f5edf698SHong Zhang #undef __FUNCT__ 2824a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ" 283fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,MatReuse reuse,Mat *B) 28449b5e25fSSatish Balay { 285dfbe8321SBarry Smith PetscErrorCode ierr; 2865fd66863SKarl Rupp 28749b5e25fSSatish Balay PetscFunctionBegin; 288815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 289999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 290fc4dec0aSBarry Smith } 2918115998fSBarry Smith PetscFunctionReturn(0); 29249b5e25fSSatish Balay } 29349b5e25fSSatish Balay 2944a2ae208SSatish Balay #undef __FUNCT__ 2954a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII" 2967da1fb6eSBarry Smith PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 29749b5e25fSSatish Balay { 29849b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 299dfbe8321SBarry Smith PetscErrorCode ierr; 300d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 301f3ef73ceSBarry Smith PetscViewerFormat format; 302121deb67SSatish Balay PetscInt *diag; 30349b5e25fSSatish Balay 30449b5e25fSSatish Balay PetscFunctionBegin; 305b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 306456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 30777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 308fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 309d2507d54SMatthew Knepley Mat aij; 310d5f3da31SBarry Smith if (A->factortype && bs>1) { 31170d5e725SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n");CHKERRQ(ierr); 31270d5e725SHong Zhang PetscFunctionReturn(0); 31370d5e725SHong Zhang } 314c9f458caSMatthew Knepley ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 315c9f458caSMatthew Knepley ierr = MatView(aij,viewer);CHKERRQ(ierr); 3166bf464f9SBarry Smith ierr = MatDestroy(&aij);CHKERRQ(ierr); 317fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 318d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 31949b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 32049b5e25fSSatish Balay for (j=0; j<bs; j++) { 32177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 32249b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 32349b5e25fSSatish Balay for (l=0; l<bs; l++) { 32449b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 32549b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 32657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 32757622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 32849b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 32957622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 33057622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33149b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 33257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 33349b5e25fSSatish Balay } 33449b5e25fSSatish Balay #else 33549b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 33657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 33749b5e25fSSatish Balay } 33849b5e25fSSatish Balay #endif 33949b5e25fSSatish Balay } 34049b5e25fSSatish Balay } 341b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 34249b5e25fSSatish Balay } 34349b5e25fSSatish Balay } 344d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 345c1490034SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 346c1490034SHong Zhang PetscFunctionReturn(0); 34749b5e25fSSatish Balay } else { 348d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 3492c990fa1SHong Zhang if (A->factortype) { /* for factored matrix */ 3502c990fa1SHong Zhang if (bs>1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"matrix is factored with bs>1. Not implemented yet"); 3512c990fa1SHong Zhang 352121deb67SSatish Balay diag=a->diag; 353121deb67SSatish Balay for (i=0; i<a->mbs; i++) { /* for row block i */ 3542c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 3552c990fa1SHong Zhang /* diagonal entry */ 3562c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 3572c990fa1SHong Zhang if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) { 35857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3592c990fa1SHong Zhang } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) { 36057622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]),-(double)PetscImaginaryPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3612c990fa1SHong Zhang } else { 36257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)PetscRealPart(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3632c990fa1SHong Zhang } 3642c990fa1SHong Zhang #else 3656712e2f1SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[diag[i]],(double)(1.0/a->a[diag[i]]));CHKERRQ(ierr); 3662c990fa1SHong Zhang #endif 3672c990fa1SHong Zhang /* off-diagonal entries */ 3682c990fa1SHong Zhang for (k=a->i[i]; k<a->i[i+1]-1; k++) { 3692c990fa1SHong Zhang #if defined(PETSC_USE_COMPLEX) 370ca0704adSBarry Smith if (PetscImaginaryPart(a->a[k]) > 0.0) { 37157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 372ca0704adSBarry Smith } else if (PetscImaginaryPart(a->a[k]) < 0.0) { 37357622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k],(double)PetscRealPart(a->a[k]),-(double)PetscImaginaryPart(a->a[k]));CHKERRQ(ierr); 3742c990fa1SHong Zhang } else { 37557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k],(double)PetscRealPart(a->a[k]));CHKERRQ(ierr); 3762c990fa1SHong Zhang } 3772c990fa1SHong Zhang #else 37857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->j[k],(double)a->a[k]);CHKERRQ(ierr); 3792c990fa1SHong Zhang #endif 3802c990fa1SHong Zhang } 3812c990fa1SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 3822c990fa1SHong Zhang } 3832c990fa1SHong Zhang 3842c990fa1SHong Zhang } else { /* for non-factored matrix */ 3850c74a584SJed Brown for (i=0; i<a->mbs; i++) { /* for row block i */ 3860c74a584SJed Brown for (j=0; j<bs; j++) { /* for row bs*i + j */ 38777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 3880c74a584SJed Brown for (k=a->i[i]; k<a->i[i+1]; k++) { /* for column block */ 3890c74a584SJed Brown for (l=0; l<bs; l++) { /* for column */ 39049b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 39149b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 39257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 39357622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 39449b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 39557622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 39657622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 39749b5e25fSSatish Balay } else { 39857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 39949b5e25fSSatish Balay } 40049b5e25fSSatish Balay #else 40157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 40249b5e25fSSatish Balay #endif 40349b5e25fSSatish Balay } 40449b5e25fSSatish Balay } 405b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 40649b5e25fSSatish Balay } 40749b5e25fSSatish Balay } 4082c990fa1SHong Zhang } 409d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 41049b5e25fSSatish Balay } 411b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 41249b5e25fSSatish Balay PetscFunctionReturn(0); 41349b5e25fSSatish Balay } 41449b5e25fSSatish Balay 4159804daf3SBarry Smith #include <petscdraw.h> 4164a2ae208SSatish Balay #undef __FUNCT__ 4174a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom" 4186849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 41949b5e25fSSatish Balay { 42049b5e25fSSatish Balay Mat A = (Mat) Aa; 42149b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 4226849ba73SBarry Smith PetscErrorCode ierr; 423d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 42413f74950SBarry Smith PetscMPIInt rank; 42549b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 42649b5e25fSSatish Balay MatScalar *aa; 42749b5e25fSSatish Balay MPI_Comm comm; 428b0a32e0cSBarry Smith PetscViewer viewer; 42949b5e25fSSatish Balay 43049b5e25fSSatish Balay PetscFunctionBegin; 43149b5e25fSSatish Balay /* 43249b5e25fSSatish Balay This is nasty. If this is called from an originally parallel matrix 43349b5e25fSSatish Balay then all processes call this,but only the first has the matrix so the 43449b5e25fSSatish Balay rest should return immediately. 43549b5e25fSSatish Balay */ 43649b5e25fSSatish Balay ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr); 43749b5e25fSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 43849b5e25fSSatish Balay if (rank) PetscFunctionReturn(0); 43949b5e25fSSatish Balay 44049b5e25fSSatish Balay ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 44149b5e25fSSatish Balay 442b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 443b0a32e0cSBarry Smith PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric"); 44449b5e25fSSatish Balay 44549b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 446b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 44749b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 44849b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 449d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 45049b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 45149b5e25fSSatish Balay aa = a->a + j*bs2; 45249b5e25fSSatish Balay for (k=0; k<bs; k++) { 45349b5e25fSSatish Balay for (l=0; l<bs; l++) { 45449b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 455b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 45649b5e25fSSatish Balay } 45749b5e25fSSatish Balay } 45849b5e25fSSatish Balay } 45949b5e25fSSatish Balay } 460b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 46149b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 46249b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 463d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 46449b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 46549b5e25fSSatish Balay aa = a->a + j*bs2; 46649b5e25fSSatish Balay for (k=0; k<bs; k++) { 46749b5e25fSSatish Balay for (l=0; l<bs; l++) { 46849b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 469b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 47049b5e25fSSatish Balay } 47149b5e25fSSatish Balay } 47249b5e25fSSatish Balay } 47349b5e25fSSatish Balay } 47449b5e25fSSatish Balay 475b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 47649b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 47749b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 478d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 47949b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 48049b5e25fSSatish Balay aa = a->a + j*bs2; 48149b5e25fSSatish Balay for (k=0; k<bs; k++) { 48249b5e25fSSatish Balay for (l=0; l<bs; l++) { 48349b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 484b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 48549b5e25fSSatish Balay } 48649b5e25fSSatish Balay } 48749b5e25fSSatish Balay } 48849b5e25fSSatish Balay } 48949b5e25fSSatish Balay PetscFunctionReturn(0); 49049b5e25fSSatish Balay } 49149b5e25fSSatish Balay 4924a2ae208SSatish Balay #undef __FUNCT__ 4934a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw" 4946849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 49549b5e25fSSatish Balay { 496dfbe8321SBarry Smith PetscErrorCode ierr; 49749b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 498b0a32e0cSBarry Smith PetscDraw draw; 499ace3abfcSBarry Smith PetscBool isnull; 50049b5e25fSSatish Balay 50149b5e25fSSatish Balay PetscFunctionBegin; 502b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 503b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 50449b5e25fSSatish Balay 50549b5e25fSSatish Balay ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 506d0f46423SBarry Smith xr = A->rmap->N; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 50749b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 508b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 509b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 5100298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 51149b5e25fSSatish Balay PetscFunctionReturn(0); 51249b5e25fSSatish Balay } 51349b5e25fSSatish Balay 5144a2ae208SSatish Balay #undef __FUNCT__ 5154a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ" 516dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 51749b5e25fSSatish Balay { 518dfbe8321SBarry Smith PetscErrorCode ierr; 519ace3abfcSBarry Smith PetscBool iascii,isdraw; 52008917f38SBarry Smith FILE *file = 0; 52149b5e25fSSatish Balay 52249b5e25fSSatish Balay PetscFunctionBegin; 523251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 524251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 52532077d6dSBarry Smith if (iascii) { 52649b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 52749b5e25fSSatish Balay } else if (isdraw) { 52849b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr); 52949b5e25fSSatish Balay } else { 530a5e6ed63SBarry Smith Mat B; 531ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 532a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 5336bf464f9SBarry Smith ierr = MatDestroy(&B);CHKERRQ(ierr); 53408917f38SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 53508917f38SBarry Smith if (file) { 53608917f38SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 53708917f38SBarry Smith } 53849b5e25fSSatish Balay } 53949b5e25fSSatish Balay PetscFunctionReturn(0); 54049b5e25fSSatish Balay } 54149b5e25fSSatish Balay 54249b5e25fSSatish Balay 5434a2ae208SSatish Balay #undef __FUNCT__ 5444a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ" 54513f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 54649b5e25fSSatish Balay { 547045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 54813f74950SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 54913f74950SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 550d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 55197e567efSBarry Smith MatScalar *ap,*aa = a->a; 55249b5e25fSSatish Balay 55349b5e25fSSatish Balay PetscFunctionBegin; 55449b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 55549b5e25fSSatish Balay row = im[k]; brow = row/bs; 556e32f2f54SBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); */ 557e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 55849b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 55949b5e25fSSatish Balay nrow = ailen[brow]; 56049b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 561e32f2f54SBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); */ 562e32f2f54SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 56349b5e25fSSatish Balay col = in[l]; 56449b5e25fSSatish Balay bcol = col/bs; 56549b5e25fSSatish Balay cidx = col%bs; 56649b5e25fSSatish Balay ridx = row%bs; 56749b5e25fSSatish Balay high = nrow; 56849b5e25fSSatish Balay low = 0; /* assume unsorted */ 56949b5e25fSSatish Balay while (high-low > 5) { 57049b5e25fSSatish Balay t = (low+high)/2; 57149b5e25fSSatish Balay if (rp[t] > bcol) high = t; 57249b5e25fSSatish Balay else low = t; 57349b5e25fSSatish Balay } 57449b5e25fSSatish Balay for (i=low; i<high; i++) { 57549b5e25fSSatish Balay if (rp[i] > bcol) break; 57649b5e25fSSatish Balay if (rp[i] == bcol) { 57749b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 57849b5e25fSSatish Balay goto finished; 57949b5e25fSSatish Balay } 58049b5e25fSSatish Balay } 58197e567efSBarry Smith *v++ = 0.0; 58249b5e25fSSatish Balay finished:; 58349b5e25fSSatish Balay } 58449b5e25fSSatish Balay } 58549b5e25fSSatish Balay PetscFunctionReturn(0); 58649b5e25fSSatish Balay } 58749b5e25fSSatish Balay 58849b5e25fSSatish Balay 5894a2ae208SSatish Balay #undef __FUNCT__ 5904a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ" 59113f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 59249b5e25fSSatish Balay { 5930880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 5946849ba73SBarry Smith PetscErrorCode ierr; 595e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 59613f74950SBarry Smith PetscInt *imax =a->imax,*ai=a->i,*ailen=a->ilen; 597d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 598ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 599dd6ea824SBarry Smith const PetscScalar *value = v; 600f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 6010880e062SHong Zhang 60249b5e25fSSatish Balay PetscFunctionBegin; 60326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 60426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 60526fbe8dcSKarl Rupp 6060880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 6070880e062SHong Zhang row = im[k]; 6080880e062SHong Zhang if (row < 0) continue; 6092515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 610e32f2f54SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 6110880e062SHong Zhang #endif 6120880e062SHong Zhang rp = aj + ai[row]; 6130880e062SHong Zhang ap = aa + bs2*ai[row]; 6140880e062SHong Zhang rmax = imax[row]; 6150880e062SHong Zhang nrow = ailen[row]; 6160880e062SHong Zhang low = 0; 617818f2c47SBarry Smith high = nrow; 6180880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 6190880e062SHong Zhang if (in[l] < 0) continue; 6200880e062SHong Zhang col = in[l]; 6212515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 622e32f2f54SBarry Smith if (col >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",col,a->nbs-1); 623b1823623SSatish Balay #endif 624b98bf0e1SJed Brown if (col < row) { 62526fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular block */ 62626fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 627b98bf0e1SJed Brown } 62826fbe8dcSKarl Rupp if (roworiented) value = v + k*(stepval+bs)*bs + l*bs; 62926fbe8dcSKarl Rupp else value = v + l*(stepval+bs)*bs + k*bs; 63026fbe8dcSKarl Rupp 63126fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 63226fbe8dcSKarl Rupp else high = nrow; 63326fbe8dcSKarl Rupp 634e2ee6c50SBarry Smith lastcol = col; 6350880e062SHong Zhang while (high-low > 7) { 6360880e062SHong Zhang t = (low+high)/2; 6370880e062SHong Zhang if (rp[t] > col) high = t; 6380880e062SHong Zhang else low = t; 6390880e062SHong Zhang } 6400880e062SHong Zhang for (i=low; i<high; i++) { 6410880e062SHong Zhang if (rp[i] > col) break; 6420880e062SHong Zhang if (rp[i] == col) { 6430880e062SHong Zhang bap = ap + bs2*i; 6440880e062SHong Zhang if (roworiented) { 6450880e062SHong Zhang if (is == ADD_VALUES) { 6460880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6470880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6480880e062SHong Zhang bap[jj] += *value++; 6490880e062SHong Zhang } 6500880e062SHong Zhang } 6510880e062SHong Zhang } else { 6520880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6530880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6540880e062SHong Zhang bap[jj] = *value++; 6550880e062SHong Zhang } 6560880e062SHong Zhang } 6570880e062SHong Zhang } 6580880e062SHong Zhang } else { 6590880e062SHong Zhang if (is == ADD_VALUES) { 6600880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6610880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6620880e062SHong Zhang *bap++ += *value++; 6630880e062SHong Zhang } 6640880e062SHong Zhang } 6650880e062SHong Zhang } else { 6660880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6670880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6680880e062SHong Zhang *bap++ = *value++; 6690880e062SHong Zhang } 6700880e062SHong Zhang } 6710880e062SHong Zhang } 6720880e062SHong Zhang } 6730880e062SHong Zhang goto noinsert2; 6740880e062SHong Zhang } 6750880e062SHong Zhang } 6760880e062SHong Zhang if (nonew == 1) goto noinsert2; 677e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 678fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 679c03d1d03SSatish Balay N = nrow++ - 1; high++; 6800880e062SHong Zhang /* shift up all the later entries in this row */ 6810880e062SHong Zhang for (ii=N; ii>=i; ii--) { 6820880e062SHong Zhang rp[ii+1] = rp[ii]; 6830880e062SHong Zhang ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 6840880e062SHong Zhang } 6850880e062SHong Zhang if (N >= i) { 6860880e062SHong Zhang ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 6870880e062SHong Zhang } 6880880e062SHong Zhang rp[i] = col; 6890880e062SHong Zhang bap = ap + bs2*i; 6900880e062SHong Zhang if (roworiented) { 6910880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6920880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6930880e062SHong Zhang bap[jj] = *value++; 6940880e062SHong Zhang } 6950880e062SHong Zhang } 6960880e062SHong Zhang } else { 6970880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6980880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6990880e062SHong Zhang *bap++ = *value++; 7000880e062SHong Zhang } 7010880e062SHong Zhang } 7020880e062SHong Zhang } 7030880e062SHong Zhang noinsert2:; 7040880e062SHong Zhang low = i; 7050880e062SHong Zhang } 7060880e062SHong Zhang ailen[row] = nrow; 7070880e062SHong Zhang } 7080880e062SHong Zhang PetscFunctionReturn(0); 70949b5e25fSSatish Balay } 71049b5e25fSSatish Balay 71164831d72SBarry Smith /* 71264831d72SBarry Smith This is not yet used 71364831d72SBarry Smith */ 7144a2ae208SSatish Balay #undef __FUNCT__ 7154108e4d5SBarry Smith #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode" 7164108e4d5SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ_SeqAIJ_Inode(Mat A) 7170def2e27SBarry Smith { 7180def2e27SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7190def2e27SBarry Smith PetscErrorCode ierr; 7200def2e27SBarry Smith const PetscInt *ai = a->i, *aj = a->j,*cols; 7210def2e27SBarry Smith PetscInt i = 0,j,blk_size,m = A->rmap->n,node_count = 0,nzx,nzy,*ns,row,nz,cnt,cnt2,*counts; 722ace3abfcSBarry Smith PetscBool flag; 7230def2e27SBarry Smith 7240def2e27SBarry Smith PetscFunctionBegin; 725785e854fSJed Brown ierr = PetscMalloc1(m,&ns);CHKERRQ(ierr); 7260def2e27SBarry Smith while (i < m) { 7270def2e27SBarry Smith nzx = ai[i+1] - ai[i]; /* Number of nonzeros */ 7280def2e27SBarry Smith /* Limits the number of elements in a node to 'a->inode.limit' */ 7290def2e27SBarry Smith for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) { 7300def2e27SBarry Smith nzy = ai[j+1] - ai[j]; 7310def2e27SBarry Smith if (nzy != (nzx - j + i)) break; 7320def2e27SBarry Smith ierr = PetscMemcmp(aj + ai[i] + j - i,aj + ai[j],nzy*sizeof(PetscInt),&flag);CHKERRQ(ierr); 7330def2e27SBarry Smith if (!flag) break; 7340def2e27SBarry Smith } 7350def2e27SBarry Smith ns[node_count++] = blk_size; 73626fbe8dcSKarl Rupp 7370def2e27SBarry Smith i = j; 7380def2e27SBarry Smith } 7390def2e27SBarry Smith if (!a->inode.size && m && node_count > .9*m) { 7400def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7410def2e27SBarry Smith ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr); 7420def2e27SBarry Smith } else { 7430def2e27SBarry Smith a->inode.node_count = node_count; 74426fbe8dcSKarl Rupp 745785e854fSJed Brown ierr = PetscMalloc1(node_count,&a->inode.size);CHKERRQ(ierr); 7463bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,node_count*sizeof(PetscInt));CHKERRQ(ierr); 74722d28d08SBarry Smith ierr = PetscMemcpy(a->inode.size,ns,node_count*sizeof(PetscInt));CHKERRQ(ierr); 7480def2e27SBarry Smith ierr = PetscFree(ns);CHKERRQ(ierr); 7490def2e27SBarry Smith ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr); 7500def2e27SBarry Smith 7510def2e27SBarry Smith /* count collections of adjacent columns in each inode */ 7520def2e27SBarry Smith row = 0; 7530def2e27SBarry Smith cnt = 0; 7540def2e27SBarry Smith for (i=0; i<node_count; i++) { 7550def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7560def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7570def2e27SBarry Smith for (j=1; j<nz; j++) { 75826fbe8dcSKarl Rupp if (cols[j] != cols[j-1]+1) cnt++; 7590def2e27SBarry Smith } 7600def2e27SBarry Smith cnt++; 7610def2e27SBarry Smith row += a->inode.size[i]; 7620def2e27SBarry Smith } 763785e854fSJed Brown ierr = PetscMalloc1(2*cnt,&counts);CHKERRQ(ierr); 7640def2e27SBarry Smith cnt = 0; 7650def2e27SBarry Smith row = 0; 7660def2e27SBarry Smith for (i=0; i<node_count; i++) { 7670def2e27SBarry Smith cols = aj + ai[row] + a->inode.size[i]; 7680def2e27SBarry Smith counts[2*cnt] = cols[0]; 7690def2e27SBarry Smith nz = ai[row+1] - ai[row] - a->inode.size[i]; 7700def2e27SBarry Smith cnt2 = 1; 7710def2e27SBarry Smith for (j=1; j<nz; j++) { 7720def2e27SBarry Smith if (cols[j] != cols[j-1]+1) { 7730def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7740def2e27SBarry Smith counts[2*cnt] = cols[j]; 7750def2e27SBarry Smith cnt2 = 1; 7760def2e27SBarry Smith } else cnt2++; 7770def2e27SBarry Smith } 7780def2e27SBarry Smith counts[2*(cnt++)+1] = cnt2; 7790def2e27SBarry Smith row += a->inode.size[i]; 7800def2e27SBarry Smith } 78122d28d08SBarry Smith ierr = PetscIntView(2*cnt,counts,0);CHKERRQ(ierr); 7820def2e27SBarry Smith } 78338702af4SBarry Smith PetscFunctionReturn(0); 78438702af4SBarry Smith } 78538702af4SBarry Smith 78638702af4SBarry Smith #undef __FUNCT__ 7874a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ" 788dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 78949b5e25fSSatish Balay { 79049b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7916849ba73SBarry Smith PetscErrorCode ierr; 79213f74950SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 793d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 79413f74950SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 79549b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 79649b5e25fSSatish Balay 79749b5e25fSSatish Balay PetscFunctionBegin; 79849b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 79949b5e25fSSatish Balay 80049b5e25fSSatish Balay if (m) rmax = ailen[0]; 80149b5e25fSSatish Balay for (i=1; i<mbs; i++) { 80249b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 80349b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 80449b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 80549b5e25fSSatish Balay if (fshift) { 80649b5e25fSSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 80749b5e25fSSatish Balay N = ailen[i]; 80849b5e25fSSatish Balay for (j=0; j<N; j++) { 80949b5e25fSSatish Balay ip[j-fshift] = ip[j]; 81049b5e25fSSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 81149b5e25fSSatish Balay } 81249b5e25fSSatish Balay } 81349b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 81449b5e25fSSatish Balay } 81549b5e25fSSatish Balay if (mbs) { 81649b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 81749b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 81849b5e25fSSatish Balay } 81949b5e25fSSatish Balay /* reset ilen and imax for each row */ 82049b5e25fSSatish Balay for (i=0; i<mbs; i++) { 82149b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 82249b5e25fSSatish Balay } 8236c6c5352SBarry Smith a->nz = ai[mbs]; 82449b5e25fSSatish Balay 825b424e231SHong Zhang /* diagonals may have moved, reset it */ 826b424e231SHong Zhang if (a->diag) { 8272ed38d0bSJed Brown ierr = PetscMemcpy(a->diag,ai,mbs*sizeof(PetscInt));CHKERRQ(ierr); 82849b5e25fSSatish Balay } 82926fbe8dcSKarl Rupp if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 83026fbe8dcSKarl Rupp 831d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->rmap->N,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 832ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 833ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 83426fbe8dcSKarl Rupp 8358e58a170SBarry Smith A->info.mallocs += a->reallocs; 83649b5e25fSSatish Balay a->reallocs = 0; 83749b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 838061b2667SBarry Smith a->idiagvalid = PETSC_FALSE; 8394dcd73b1SHong Zhang a->rmax = rmax; 84038702af4SBarry Smith 84138702af4SBarry Smith if (A->cmap->n < 65536 && A->cmap->bs == 1) { 84244e1c64aSLisandro Dalcin if (a->jshort && a->free_jshort) { 84317803ae8SHong Zhang /* when matrix data structure is changed, previous jshort must be replaced */ 84417803ae8SHong Zhang ierr = PetscFree(a->jshort);CHKERRQ(ierr); 84517803ae8SHong Zhang } 846785e854fSJed Brown ierr = PetscMalloc1(a->i[A->rmap->n],&a->jshort);CHKERRQ(ierr); 8473bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,a->i[A->rmap->n]*sizeof(unsigned short));CHKERRQ(ierr); 84838702af4SBarry Smith for (i=0; i<a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i]; 84938702af4SBarry Smith A->ops->mult = MatMult_SeqSBAIJ_1_ushort; 85041f059aeSBarry Smith A->ops->sor = MatSOR_SeqSBAIJ_ushort; 8514da8f245SBarry Smith a->free_jshort = PETSC_TRUE; 85238702af4SBarry Smith } 85349b5e25fSSatish Balay PetscFunctionReturn(0); 85449b5e25fSSatish Balay } 85549b5e25fSSatish Balay 85649b5e25fSSatish Balay /* 85749b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 85849b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 85949b5e25fSSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 86049b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 86149b5e25fSSatish Balay */ 8624a2ae208SSatish Balay #undef __FUNCT__ 8634a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks" 86413f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 86549b5e25fSSatish Balay { 86613f74950SBarry Smith PetscInt i,j,k,row; 867ace3abfcSBarry Smith PetscBool flg; 86849b5e25fSSatish Balay 86949b5e25fSSatish Balay PetscFunctionBegin; 87049b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 87149b5e25fSSatish Balay row = idx[i]; 87249b5e25fSSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 87349b5e25fSSatish Balay sizes[j] = 1; 87449b5e25fSSatish Balay i++; 87549b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 87649b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 87749b5e25fSSatish Balay i++; 87849b5e25fSSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 87949b5e25fSSatish Balay flg = PETSC_TRUE; 88049b5e25fSSatish Balay for (k=1; k<bs; k++) { 88149b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 88249b5e25fSSatish Balay flg = PETSC_FALSE; 88349b5e25fSSatish Balay break; 88449b5e25fSSatish Balay } 88549b5e25fSSatish Balay } 886abc0a331SBarry Smith if (flg) { /* No break in the bs */ 88749b5e25fSSatish Balay sizes[j] = bs; 88849b5e25fSSatish Balay i += bs; 88949b5e25fSSatish Balay } else { 89049b5e25fSSatish Balay sizes[j] = 1; 89149b5e25fSSatish Balay i++; 89249b5e25fSSatish Balay } 89349b5e25fSSatish Balay } 89449b5e25fSSatish Balay } 89549b5e25fSSatish Balay *bs_max = j; 89649b5e25fSSatish Balay PetscFunctionReturn(0); 89749b5e25fSSatish Balay } 89849b5e25fSSatish Balay 89949b5e25fSSatish Balay 90049b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 90149b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 90249b5e25fSSatish Balay */ 90349b5e25fSSatish Balay 9044a2ae208SSatish Balay #undef __FUNCT__ 9054a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ" 90613f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 90749b5e25fSSatish Balay { 90849b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 9096849ba73SBarry Smith PetscErrorCode ierr; 910e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 91113f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 912d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 91313f74950SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 91449b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 91549b5e25fSSatish Balay 91649b5e25fSSatish Balay PetscFunctionBegin; 91749b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 91849b5e25fSSatish Balay row = im[k]; /* row number */ 91949b5e25fSSatish Balay brow = row/bs; /* block row number */ 92049b5e25fSSatish Balay if (row < 0) continue; 9212515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 922e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 92349b5e25fSSatish Balay #endif 92449b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 92549b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 92649b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 92749b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 92849b5e25fSSatish Balay low = 0; 92949b5e25fSSatish Balay 93049b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 93149b5e25fSSatish Balay if (in[l] < 0) continue; 9322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 933e32f2f54SBarry Smith if (in[l] >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->rmap->N-1); 93449b5e25fSSatish Balay #endif 93549b5e25fSSatish Balay col = in[l]; 93649b5e25fSSatish Balay bcol = col/bs; /* block col number */ 93749b5e25fSSatish Balay 938941593c8SHong Zhang if (brow > bcol) { 93926fbe8dcSKarl Rupp if (a->ignore_ltriangular) continue; /* ignore lower triangular values */ 94026fbe8dcSKarl Rupp else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)"); 941941593c8SHong Zhang } 942f4989cb3SHong Zhang 94349b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 9448549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)) { 94549b5e25fSSatish Balay /* element value a(k,l) */ 94626fbe8dcSKarl Rupp if (roworiented) value = v[l + k*n]; 94726fbe8dcSKarl Rupp else value = v[k + l*m]; 94849b5e25fSSatish Balay 94949b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 95026fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 95126fbe8dcSKarl Rupp high = nrow; 952e2ee6c50SBarry Smith lastcol = col; 95349b5e25fSSatish Balay while (high-low > 7) { 95449b5e25fSSatish Balay t = (low+high)/2; 95549b5e25fSSatish Balay if (rp[t] > bcol) high = t; 95649b5e25fSSatish Balay else low = t; 95749b5e25fSSatish Balay } 95849b5e25fSSatish Balay for (i=low; i<high; i++) { 95949b5e25fSSatish Balay if (rp[i] > bcol) break; 96049b5e25fSSatish Balay if (rp[i] == bcol) { 96149b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 96249b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 96349b5e25fSSatish Balay else *bap = value; 9648549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 9658549e402SHong Zhang if (brow == bcol && ridx < cidx) { 9668549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 9678549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 9688549e402SHong Zhang else *bap = value; 9698549e402SHong Zhang } 97049b5e25fSSatish Balay goto noinsert1; 97149b5e25fSSatish Balay } 97249b5e25fSSatish Balay } 97349b5e25fSSatish Balay 97449b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 975e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 976fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 97749b5e25fSSatish Balay 978c03d1d03SSatish Balay N = nrow++ - 1; high++; 97949b5e25fSSatish Balay /* shift up all the later entries in this row */ 98049b5e25fSSatish Balay for (ii=N; ii>=i; ii--) { 98149b5e25fSSatish Balay rp[ii+1] = rp[ii]; 98249b5e25fSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 98349b5e25fSSatish Balay } 98449b5e25fSSatish Balay if (N>=i) { 98549b5e25fSSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 98649b5e25fSSatish Balay } 98749b5e25fSSatish Balay rp[i] = bcol; 98849b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 989e56f5c9eSBarry Smith A->nonzerostate++; 99049b5e25fSSatish Balay noinsert1:; 99149b5e25fSSatish Balay low = i; 9928549e402SHong Zhang } 99349b5e25fSSatish Balay } /* end of loop over added columns */ 99449b5e25fSSatish Balay ailen[brow] = nrow; 99549b5e25fSSatish Balay } /* end of loop over added rows */ 99649b5e25fSSatish Balay PetscFunctionReturn(0); 99749b5e25fSSatish Balay } 99849b5e25fSSatish Balay 9994a2ae208SSatish Balay #undef __FUNCT__ 10004d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ" 10010481f469SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,const MatFactorInfo *info) 100249b5e25fSSatish Balay { 10034ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 100449b5e25fSSatish Balay Mat outA; 1005dfbe8321SBarry Smith PetscErrorCode ierr; 1006ace3abfcSBarry Smith PetscBool row_identity; 100749b5e25fSSatish Balay 100849b5e25fSSatish Balay PetscFunctionBegin; 1009e32f2f54SBarry Smith if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels=0 is supported for in-place icc"); 1010c84f5b01SHong Zhang ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 1011e32f2f54SBarry Smith if (!row_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix reordering is not supported"); 1012e32f2f54SBarry Smith if (inA->rmap->bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrix block size %D is not supported",inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */ 1013c84f5b01SHong Zhang 101449b5e25fSSatish Balay outA = inA; 1015d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_ICC; 101649b5e25fSSatish Balay 10171a3463dfSHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr); 1018d595f711SHong Zhang ierr = MatSeqSBAIJSetNumericFactorization_inplace(inA,row_identity);CHKERRQ(ierr); 101949b5e25fSSatish Balay 1020c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10216bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 1022c84f5b01SHong Zhang a->row = row; 1023c3122656SLisandro Dalcin ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 10246bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 1025c84f5b01SHong Zhang a->col = row; 1026c84f5b01SHong Zhang 1027c84f5b01SHong Zhang /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */ 1028c84f5b01SHong Zhang if (a->icol) {ierr = ISInvertPermutation(row,PETSC_DECIDE, &a->icol);CHKERRQ(ierr);} 10293bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr); 103049b5e25fSSatish Balay 103149b5e25fSSatish Balay if (!a->solve_work) { 1032*854ce69bSBarry Smith ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr); 10333bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 103449b5e25fSSatish Balay } 103549b5e25fSSatish Balay 1036719d5645SBarry Smith ierr = MatCholeskyFactorNumeric(outA,inA,info);CHKERRQ(ierr); 103749b5e25fSSatish Balay PetscFunctionReturn(0); 103849b5e25fSSatish Balay } 1039950f1e5bSHong Zhang 10404a2ae208SSatish Balay #undef __FUNCT__ 10414a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ" 10427087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices) 104349b5e25fSSatish Balay { 1044045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ*)mat->data; 104513f74950SBarry Smith PetscInt i,nz,n; 10467827cd58SJed Brown PetscErrorCode ierr; 104749b5e25fSSatish Balay 104849b5e25fSSatish Balay PetscFunctionBegin; 10496c6c5352SBarry Smith nz = baij->maxnz; 1050d0f46423SBarry Smith n = mat->cmap->n; 105126fbe8dcSKarl Rupp for (i=0; i<nz; i++) baij->j[i] = indices[i]; 105226fbe8dcSKarl Rupp 10536c6c5352SBarry Smith baij->nz = nz; 105426fbe8dcSKarl Rupp for (i=0; i<n; i++) baij->ilen[i] = baij->imax[i]; 105526fbe8dcSKarl Rupp 10567827cd58SJed Brown ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 105749b5e25fSSatish Balay PetscFunctionReturn(0); 105849b5e25fSSatish Balay } 105949b5e25fSSatish Balay 10604a2ae208SSatish Balay #undef __FUNCT__ 10614a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices" 106249b5e25fSSatish Balay /*@ 106319585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 106449b5e25fSSatish Balay in the matrix. 106549b5e25fSSatish Balay 106649b5e25fSSatish Balay Input Parameters: 106719585528SSatish Balay + mat - the SeqSBAIJ matrix 106849b5e25fSSatish Balay - indices - the column indices 106949b5e25fSSatish Balay 107049b5e25fSSatish Balay Level: advanced 107149b5e25fSSatish Balay 107249b5e25fSSatish Balay Notes: 107349b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 107449b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 107549b5e25fSSatish Balay of the MatSetValues() operation. 107649b5e25fSSatish Balay 107749b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 1078d1be2dadSMatthew Knepley MatCreateSeqSBAIJ(), and the columns indices MUST be sorted. 107949b5e25fSSatish Balay 1080ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 108149b5e25fSSatish Balay 1082ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ 108349b5e25fSSatish Balay @*/ 10847087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices) 108549b5e25fSSatish Balay { 10864ac538c5SBarry Smith PetscErrorCode ierr; 108749b5e25fSSatish Balay 108849b5e25fSSatish Balay PetscFunctionBegin; 10890700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 10904482741eSBarry Smith PetscValidPointer(indices,2); 10914ac538c5SBarry Smith ierr = PetscUseMethod(mat,"MatSeqSBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr); 109249b5e25fSSatish Balay PetscFunctionReturn(0); 109349b5e25fSSatish Balay } 109449b5e25fSSatish Balay 10954a2ae208SSatish Balay #undef __FUNCT__ 10963c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqSBAIJ" 10973c896bc6SHong Zhang PetscErrorCode MatCopy_SeqSBAIJ(Mat A,Mat B,MatStructure str) 10983c896bc6SHong Zhang { 10993c896bc6SHong Zhang PetscErrorCode ierr; 11003c896bc6SHong Zhang 11013c896bc6SHong Zhang PetscFunctionBegin; 11023c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 11033c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 11043c896bc6SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11053c896bc6SHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 11063c896bc6SHong Zhang 1107e7e72b3dSBarry Smith if (a->i[A->rmap->N] != b->i[B->rmap->N]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1108d0f46423SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 11093c896bc6SHong Zhang } else { 1110f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 11113c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1112f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 11133c896bc6SHong Zhang } 11143c896bc6SHong Zhang PetscFunctionReturn(0); 11153c896bc6SHong Zhang } 11163c896bc6SHong Zhang 11173c896bc6SHong Zhang #undef __FUNCT__ 11184994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqSBAIJ" 11194994cf47SJed Brown PetscErrorCode MatSetUp_SeqSBAIJ(Mat A) 1120273d9f13SBarry Smith { 1121dfbe8321SBarry Smith PetscErrorCode ierr; 1122273d9f13SBarry Smith 1123273d9f13SBarry Smith PetscFunctionBegin; 1124535b19f3SBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr); 1125273d9f13SBarry Smith PetscFunctionReturn(0); 1126273d9f13SBarry Smith } 1127273d9f13SBarry Smith 1128a6ece127SHong Zhang #undef __FUNCT__ 11298c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJGetArray_SeqSBAIJ" 11308c778c55SBarry Smith PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1131a6ece127SHong Zhang { 1132a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 11335fd66863SKarl Rupp 1134a6ece127SHong Zhang PetscFunctionBegin; 1135a6ece127SHong Zhang *array = a->a; 1136a6ece127SHong Zhang PetscFunctionReturn(0); 1137a6ece127SHong Zhang } 1138a6ece127SHong Zhang 1139a6ece127SHong Zhang #undef __FUNCT__ 11408c778c55SBarry Smith #define __FUNCT__ "MatSeqSBAIJRestoreArray_SeqSBAIJ" 11418c778c55SBarry Smith PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1142a6ece127SHong Zhang { 1143a6ece127SHong Zhang PetscFunctionBegin; 1144a6ece127SHong Zhang PetscFunctionReturn(0); 1145a6ece127SHong Zhang } 1146a6ece127SHong Zhang 114742ee4b1aSHong Zhang #undef __FUNCT__ 114852768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqSBAIJ" 114952768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y,Mat X,PetscInt *nnz) 115052768537SHong Zhang { 1151b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 115252768537SHong Zhang Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ*)X->data; 115352768537SHong Zhang Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ*)Y->data; 1154b264fe52SHong Zhang PetscErrorCode ierr; 115552768537SHong Zhang 115652768537SHong Zhang PetscFunctionBegin; 115752768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 1158b264fe52SHong Zhang ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr); 115952768537SHong Zhang PetscFunctionReturn(0); 116052768537SHong Zhang } 116152768537SHong Zhang 116252768537SHong Zhang #undef __FUNCT__ 116342ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ" 1164f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 116542ee4b1aSHong Zhang { 116642ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ*)X->data, *y=(Mat_SeqSBAIJ*)Y->data; 1167dfbe8321SBarry Smith PetscErrorCode ierr; 116831ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 1169e838b9e7SJed Brown PetscBLASInt one = 1; 117042ee4b1aSHong Zhang 117142ee4b1aSHong Zhang PetscFunctionBegin; 117242ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 1173f4df32b1SMatthew Knepley PetscScalar alpha = a; 1174c5df96a5SBarry Smith PetscBLASInt bnz; 1175c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 11768b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1177a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 117842ee4b1aSHong Zhang } else { 117952768537SHong Zhang Mat B; 118052768537SHong Zhang PetscInt *nnz; 118152768537SHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 1182f5edf698SHong Zhang ierr = MatGetRowUpperTriangular(X);CHKERRQ(ierr); 118352768537SHong Zhang ierr = MatGetRowUpperTriangular(Y);CHKERRQ(ierr); 118452768537SHong Zhang ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr); 118552768537SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 118652768537SHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 118752768537SHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 118852768537SHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 118952768537SHong Zhang ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr); 119052768537SHong Zhang ierr = MatAXPYGetPreallocation_SeqSBAIJ(Y,X,nnz);CHKERRQ(ierr); 119152768537SHong Zhang ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 119252768537SHong Zhang 119352768537SHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 119452768537SHong Zhang 119552768537SHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 119652768537SHong Zhang ierr = PetscFree(nnz);CHKERRQ(ierr); 1197f5edf698SHong Zhang ierr = MatRestoreRowUpperTriangular(X);CHKERRQ(ierr); 119852768537SHong Zhang ierr = MatRestoreRowUpperTriangular(Y);CHKERRQ(ierr); 119942ee4b1aSHong Zhang } 120042ee4b1aSHong Zhang PetscFunctionReturn(0); 120142ee4b1aSHong Zhang } 120242ee4b1aSHong Zhang 1203efcf0fc3SBarry Smith #undef __FUNCT__ 1204efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ" 1205ace3abfcSBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1206efcf0fc3SBarry Smith { 1207efcf0fc3SBarry Smith PetscFunctionBegin; 1208efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1209efcf0fc3SBarry Smith PetscFunctionReturn(0); 1210efcf0fc3SBarry Smith } 1211efcf0fc3SBarry Smith 1212efcf0fc3SBarry Smith #undef __FUNCT__ 1213efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ" 1214ace3abfcSBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscBool *flg) 1215efcf0fc3SBarry Smith { 1216efcf0fc3SBarry Smith PetscFunctionBegin; 1217efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1218efcf0fc3SBarry Smith PetscFunctionReturn(0); 1219efcf0fc3SBarry Smith } 1220efcf0fc3SBarry Smith 1221efcf0fc3SBarry Smith #undef __FUNCT__ 1222efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ" 1223ace3abfcSBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscReal tol,PetscBool *flg) 1224efcf0fc3SBarry Smith { 1225efcf0fc3SBarry Smith PetscFunctionBegin; 1226efcf0fc3SBarry Smith *flg = PETSC_FALSE; 1227efcf0fc3SBarry Smith PetscFunctionReturn(0); 1228efcf0fc3SBarry Smith } 1229efcf0fc3SBarry Smith 123099cafbc1SBarry Smith #undef __FUNCT__ 123199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqSBAIJ" 123299cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqSBAIJ(Mat A) 123399cafbc1SBarry Smith { 123499cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 123599cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1236dd6ea824SBarry Smith MatScalar *aa = a->a; 123799cafbc1SBarry Smith 123899cafbc1SBarry Smith PetscFunctionBegin; 123999cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 124099cafbc1SBarry Smith PetscFunctionReturn(0); 124199cafbc1SBarry Smith } 124299cafbc1SBarry Smith 124399cafbc1SBarry Smith #undef __FUNCT__ 124499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqSBAIJ" 124599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A) 124699cafbc1SBarry Smith { 124799cafbc1SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 124899cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 1249dd6ea824SBarry Smith MatScalar *aa = a->a; 125099cafbc1SBarry Smith 125199cafbc1SBarry Smith PetscFunctionBegin; 125299cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 125399cafbc1SBarry Smith PetscFunctionReturn(0); 125499cafbc1SBarry Smith } 125599cafbc1SBarry Smith 12563bededecSBarry Smith #undef __FUNCT__ 12573bededecSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqSBAIJ" 12583bededecSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 12593bededecSBarry Smith { 12603bededecSBarry Smith Mat_SeqSBAIJ *baij=(Mat_SeqSBAIJ*)A->data; 12613bededecSBarry Smith PetscErrorCode ierr; 12623bededecSBarry Smith PetscInt i,j,k,count; 12633bededecSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 12643bededecSBarry Smith PetscScalar zero = 0.0; 12653bededecSBarry Smith MatScalar *aa; 12663bededecSBarry Smith const PetscScalar *xx; 12673bededecSBarry Smith PetscScalar *bb; 126856777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 12693bededecSBarry Smith 12703bededecSBarry Smith PetscFunctionBegin; 12713bededecSBarry Smith /* fix right hand side if needed */ 12723bededecSBarry Smith if (x && b) { 12733bededecSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 12743bededecSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 127556777dd2SBarry Smith vecs = PETSC_TRUE; 12763bededecSBarry Smith } 12773bededecSBarry Smith 12783bededecSBarry Smith /* zero the columns */ 12791795a4d1SJed Brown ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr); 12803bededecSBarry Smith for (i=0; i<is_n; i++) { 12813bededecSBarry Smith if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]); 12823bededecSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 12833bededecSBarry Smith } 128456777dd2SBarry Smith if (vecs) { 128556777dd2SBarry Smith for (i=0; i<A->rmap->N; i++) { 128656777dd2SBarry Smith row = i/bs; 128756777dd2SBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 128856777dd2SBarry Smith for (k=0; k<bs; k++) { 128956777dd2SBarry Smith col = bs*baij->j[j] + k; 129056777dd2SBarry Smith if (col <= i) continue; 129156777dd2SBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 129226fbe8dcSKarl Rupp if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0]*xx[col]; 129326fbe8dcSKarl Rupp if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0]*xx[i]; 129456777dd2SBarry Smith } 129556777dd2SBarry Smith } 129656777dd2SBarry Smith } 129726fbe8dcSKarl Rupp for (i=0; i<is_n; i++) bb[is_idx[i]] = diag*xx[is_idx[i]]; 129856777dd2SBarry Smith } 129956777dd2SBarry Smith 13003bededecSBarry Smith for (i=0; i<A->rmap->N; i++) { 13013bededecSBarry Smith if (!zeroed[i]) { 13023bededecSBarry Smith row = i/bs; 13033bededecSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 13043bededecSBarry Smith for (k=0; k<bs; k++) { 13053bededecSBarry Smith col = bs*baij->j[j] + k; 13063bededecSBarry Smith if (zeroed[col]) { 13073bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 13083bededecSBarry Smith aa[0] = 0.0; 13093bededecSBarry Smith } 13103bededecSBarry Smith } 13113bededecSBarry Smith } 13123bededecSBarry Smith } 13133bededecSBarry Smith } 13143bededecSBarry Smith ierr = PetscFree(zeroed);CHKERRQ(ierr); 131556777dd2SBarry Smith if (vecs) { 131656777dd2SBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 131756777dd2SBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 131856777dd2SBarry Smith } 13193bededecSBarry Smith 13203bededecSBarry Smith /* zero the rows */ 13213bededecSBarry Smith for (i=0; i<is_n; i++) { 13223bededecSBarry Smith row = is_idx[i]; 13233bededecSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 13243bededecSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 13253bededecSBarry Smith for (k=0; k<count; k++) { 13263bededecSBarry Smith aa[0] = zero; 13273bededecSBarry Smith aa += bs; 13283bededecSBarry Smith } 13293bededecSBarry Smith if (diag != 0.0) { 13303bededecSBarry Smith ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 13313bededecSBarry Smith } 13323bededecSBarry Smith } 13333bededecSBarry Smith ierr = MatAssemblyEnd_SeqSBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13343bededecSBarry Smith PetscFunctionReturn(0); 13353bededecSBarry Smith } 13363bededecSBarry Smith 133749b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 13383964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 133949b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 134049b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 134149b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 134297304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N, 1343431c96f7SBarry Smith MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */ 1344e005ede5SBarry Smith MatMultAdd_SeqSBAIJ_N, 1345db4efbfdSBarry Smith 0, 134649b5e25fSSatish Balay 0, 134749b5e25fSSatish Balay 0, 134897304618SKris Buschelman /* 10*/ 0, 134949b5e25fSSatish Balay 0, 1350c078aec8SLisandro Dalcin MatCholeskyFactor_SeqSBAIJ, 135141f059aeSBarry Smith MatSOR_SeqSBAIJ, 135249b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 135397304618SKris Buschelman /* 15*/ MatGetInfo_SeqSBAIJ, 135449b5e25fSSatish Balay MatEqual_SeqSBAIJ, 135549b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 135649b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 135749b5e25fSSatish Balay MatNorm_SeqSBAIJ, 135897304618SKris Buschelman /* 20*/ 0, 135949b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 136049b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 136149b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 1362d519adbfSMatthew Knepley /* 24*/ 0, 136349b5e25fSSatish Balay 0, 136449b5e25fSSatish Balay 0, 1365db4efbfdSBarry Smith 0, 1366db4efbfdSBarry Smith 0, 13674994cf47SJed Brown /* 29*/ MatSetUp_SeqSBAIJ, 1368c464158bSHong Zhang 0, 1369db4efbfdSBarry Smith 0, 13708c778c55SBarry Smith 0, 13718c778c55SBarry Smith 0, 1372d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqSBAIJ, 1373719d5645SBarry Smith 0, 1374719d5645SBarry Smith 0, 137549b5e25fSSatish Balay 0, 1376c84f5b01SHong Zhang MatICCFactor_SeqSBAIJ, 1377d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqSBAIJ, 137849b5e25fSSatish Balay MatGetSubMatrices_SeqSBAIJ, 137949b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 138049b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 13813c896bc6SHong Zhang MatCopy_SeqSBAIJ, 1382d519adbfSMatthew Knepley /* 44*/ 0, 138349b5e25fSSatish Balay MatScale_SeqSBAIJ, 138449b5e25fSSatish Balay 0, 138549b5e25fSSatish Balay 0, 13863bededecSBarry Smith MatZeroRowsColumns_SeqSBAIJ, 1387f73d5cc4SBarry Smith /* 49*/ 0, 138849b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 138949b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 139049b5e25fSSatish Balay 0, 139149b5e25fSSatish Balay 0, 1392d519adbfSMatthew Knepley /* 54*/ 0, 139349b5e25fSSatish Balay 0, 139449b5e25fSSatish Balay 0, 139549b5e25fSSatish Balay 0, 139649b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 1397d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_SeqSBAIJ, 139849b5e25fSSatish Balay 0, 139949b5e25fSSatish Balay 0, 1400357abbc8SBarry Smith 0, 1401d959ec07SHong Zhang 0, 1402d519adbfSMatthew Knepley /* 64*/ 0, 1403d959ec07SHong Zhang 0, 1404d959ec07SHong Zhang 0, 1405d959ec07SHong Zhang 0, 1406d959ec07SHong Zhang 0, 1407d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqSBAIJ, 14083e0d88b5SBarry Smith 0, 14093e0d88b5SBarry Smith 0, 14103e0d88b5SBarry Smith 0, 14113e0d88b5SBarry Smith 0, 1412d519adbfSMatthew Knepley /* 74*/ 0, 14133e0d88b5SBarry Smith 0, 14143e0d88b5SBarry Smith 0, 14153e0d88b5SBarry Smith 0, 14163e0d88b5SBarry Smith 0, 1417d519adbfSMatthew Knepley /* 79*/ 0, 14183e0d88b5SBarry Smith 0, 14193e0d88b5SBarry Smith 0, 142097304618SKris Buschelman MatGetInertia_SeqSBAIJ, 14215bba2384SShri Abhyankar MatLoad_SeqSBAIJ, 1422d519adbfSMatthew Knepley /* 84*/ MatIsSymmetric_SeqSBAIJ, 1423865e5f61SKris Buschelman MatIsHermitian_SeqSBAIJ, 1424efcf0fc3SBarry Smith MatIsStructurallySymmetric_SeqSBAIJ, 1425865e5f61SKris Buschelman 0, 1426865e5f61SKris Buschelman 0, 1427d519adbfSMatthew Knepley /* 89*/ 0, 1428865e5f61SKris Buschelman 0, 1429865e5f61SKris Buschelman 0, 1430865e5f61SKris Buschelman 0, 1431865e5f61SKris Buschelman 0, 1432d519adbfSMatthew Knepley /* 94*/ 0, 1433865e5f61SKris Buschelman 0, 1434865e5f61SKris Buschelman 0, 143599cafbc1SBarry Smith 0, 143699cafbc1SBarry Smith 0, 1437d519adbfSMatthew Knepley /* 99*/ 0, 143899cafbc1SBarry Smith 0, 143999cafbc1SBarry Smith 0, 144099cafbc1SBarry Smith 0, 144199cafbc1SBarry Smith 0, 1442d519adbfSMatthew Knepley /*104*/ 0, 144399cafbc1SBarry Smith MatRealPart_SeqSBAIJ, 1444f5edf698SHong Zhang MatImaginaryPart_SeqSBAIJ, 1445f5edf698SHong Zhang MatGetRowUpperTriangular_SeqSBAIJ, 14462af78befSBarry Smith MatRestoreRowUpperTriangular_SeqSBAIJ, 1447d519adbfSMatthew Knepley /*109*/ 0, 14482af78befSBarry Smith 0, 14492af78befSBarry Smith 0, 14502af78befSBarry Smith 0, 1451547795f9SHong Zhang MatMissingDiagonal_SeqSBAIJ, 1452547795f9SHong Zhang /*114*/ 0, 1453547795f9SHong Zhang 0, 1454547795f9SHong Zhang 0, 1455547795f9SHong Zhang 0, 1456547795f9SHong Zhang 0, 1457547795f9SHong Zhang /*119*/ 0, 1458547795f9SHong Zhang 0, 14592f480046SShri Abhyankar 0, 14603964eb88SJed Brown 0, 14613964eb88SJed Brown 0, 14623964eb88SJed Brown /*124*/ 0, 14633964eb88SJed Brown 0, 14643964eb88SJed Brown 0, 14653964eb88SJed Brown 0, 14663964eb88SJed Brown 0, 14673964eb88SJed Brown /*129*/ 0, 14683964eb88SJed Brown 0, 14693964eb88SJed Brown 0, 14703964eb88SJed Brown 0, 14713964eb88SJed Brown 0, 14723964eb88SJed Brown /*134*/ 0, 14733964eb88SJed Brown 0, 14743964eb88SJed Brown 0, 14753964eb88SJed Brown 0, 14763964eb88SJed Brown 0, 14773964eb88SJed Brown /*139*/ 0, 1478f9426fe0SMark Adams 0, 147959f5e6ceSHong Zhang 0, 148059f5e6ceSHong Zhang 0, 148159f5e6ceSHong Zhang 0, 148259f5e6ceSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ 148399cafbc1SBarry Smith }; 1484be1d678aSKris Buschelman 14854a2ae208SSatish Balay #undef __FUNCT__ 14864a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ" 14877087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat) 148849b5e25fSSatish Balay { 14894afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 1490d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 1491dfbe8321SBarry Smith PetscErrorCode ierr; 149249b5e25fSSatish Balay 149349b5e25fSSatish Balay PetscFunctionBegin; 1494e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 149549b5e25fSSatish Balay 149649b5e25fSSatish Balay /* allocate space for values if not already there */ 149749b5e25fSSatish Balay if (!aij->saved_values) { 1498*854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr); 149949b5e25fSSatish Balay } 150049b5e25fSSatish Balay 150149b5e25fSSatish Balay /* copy values over */ 150287828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 150349b5e25fSSatish Balay PetscFunctionReturn(0); 150449b5e25fSSatish Balay } 150549b5e25fSSatish Balay 15064a2ae208SSatish Balay #undef __FUNCT__ 15074a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ" 15087087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat) 150949b5e25fSSatish Balay { 15104afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ*)mat->data; 15116849ba73SBarry Smith PetscErrorCode ierr; 1512d0f46423SBarry Smith PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 151349b5e25fSSatish Balay 151449b5e25fSSatish Balay PetscFunctionBegin; 1515e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1516e7e72b3dSBarry Smith if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 151749b5e25fSSatish Balay 151849b5e25fSSatish Balay /* copy values over */ 151987828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 152049b5e25fSSatish Balay PetscFunctionReturn(0); 152149b5e25fSSatish Balay } 152249b5e25fSSatish Balay 15234a2ae208SSatish Balay #undef __FUNCT__ 1524a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ" 15257087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 152649b5e25fSSatish Balay { 1527c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 15286849ba73SBarry Smith PetscErrorCode ierr; 15294dcd73b1SHong Zhang PetscInt i,mbs,nbs,bs2; 15302576faa2SJed Brown PetscBool skipallocation = PETSC_FALSE,flg = PETSC_FALSE,realalloc = PETSC_FALSE; 153149b5e25fSSatish Balay 153249b5e25fSSatish Balay PetscFunctionBegin; 15332576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 1534273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1535db4efbfdSBarry Smith 153633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 153726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 153826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1539e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 1540899cda47SBarry Smith 1541d0f46423SBarry Smith mbs = B->rmap->N/bs; 15424dcd73b1SHong Zhang nbs = B->cmap->n/bs; 154349b5e25fSSatish Balay bs2 = bs*bs; 154449b5e25fSSatish Balay 15454dcd73b1SHong Zhang if (mbs*bs != B->rmap->N || nbs*bs!=B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 154649b5e25fSSatish Balay 1547ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 1548ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 1549ab93d7beSBarry Smith nz = 0; 1550ab93d7beSBarry Smith } 1551ab93d7beSBarry Smith 1552435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 1553e32f2f54SBarry Smith if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 155449b5e25fSSatish Balay if (nnz) { 155549b5e25fSSatish Balay for (i=0; i<mbs; i++) { 1556e32f2f54SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 1557de64b629SHong Zhang if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D block rowlength %D",i,nnz[i],nbs); 155849b5e25fSSatish Balay } 155949b5e25fSSatish Balay } 156049b5e25fSSatish Balay 1561db4efbfdSBarry Smith B->ops->mult = MatMult_SeqSBAIJ_N; 1562db4efbfdSBarry Smith B->ops->multadd = MatMultAdd_SeqSBAIJ_N; 1563db4efbfdSBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_N; 1564db4efbfdSBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N; 156526fbe8dcSKarl Rupp 15660298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 156749b5e25fSSatish Balay if (!flg) { 156849b5e25fSSatish Balay switch (bs) { 156949b5e25fSSatish Balay case 1: 157049b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 157149b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 1572431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_1; 1573431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1; 157449b5e25fSSatish Balay break; 157549b5e25fSSatish Balay case 2: 157649b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 157749b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 1578431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_2; 1579431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2; 158049b5e25fSSatish Balay break; 158149b5e25fSSatish Balay case 3: 158249b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 158349b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 1584431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_3; 1585431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3; 158649b5e25fSSatish Balay break; 158749b5e25fSSatish Balay case 4: 158849b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 158949b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 1590431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_4; 1591431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4; 159249b5e25fSSatish Balay break; 159349b5e25fSSatish Balay case 5: 159449b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 159549b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 1596431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_5; 1597431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5; 159849b5e25fSSatish Balay break; 159949b5e25fSSatish Balay case 6: 160049b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 160149b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 1602431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_6; 1603431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6; 160449b5e25fSSatish Balay break; 160549b5e25fSSatish Balay case 7: 1606de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 160749b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 1608431c96f7SBarry Smith B->ops->multtranspose = MatMult_SeqSBAIJ_7; 1609431c96f7SBarry Smith B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7; 161049b5e25fSSatish Balay break; 161149b5e25fSSatish Balay } 161249b5e25fSSatish Balay } 161349b5e25fSSatish Balay 161449b5e25fSSatish Balay b->mbs = mbs; 16154dcd73b1SHong Zhang b->nbs = nbs; 1616ab93d7beSBarry Smith if (!skipallocation) { 16172ee49352SLisandro Dalcin if (!b->imax) { 1618dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr); 161926fbe8dcSKarl Rupp 1620c760cd28SBarry Smith b->free_imax_ilen = PETSC_TRUE; 162126fbe8dcSKarl Rupp 16223bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr); 16232ee49352SLisandro Dalcin } 162449b5e25fSSatish Balay if (!nnz) { 1625435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 162649b5e25fSSatish Balay else if (nz <= 0) nz = 1; 162726fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->imax[i] = nz; 1628153ea458SHong Zhang nz = nz*mbs; /* total nz */ 162949b5e25fSSatish Balay } else { 163049b5e25fSSatish Balay nz = 0; 16318cef66ccSHong Zhang for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 163249b5e25fSSatish Balay } 16332ee49352SLisandro Dalcin /* b->ilen will count nonzeros in each block row so far. */ 163426fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 16356c6c5352SBarry Smith /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 163649b5e25fSSatish Balay 163749b5e25fSSatish Balay /* allocate the matrix space */ 16382ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 1639dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr); 16403bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 16416c6c5352SBarry Smith ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 164213f74950SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 164326fbe8dcSKarl Rupp 164449b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 164549b5e25fSSatish Balay 164649b5e25fSSatish Balay /* pointer to beginning of each row */ 1647e60cf9a0SBarry Smith b->i[0] = 0; 164826fbe8dcSKarl Rupp for (i=1; i<mbs+1; i++) b->i[i] = b->i[i-1] + b->imax[i-1]; 164926fbe8dcSKarl Rupp 1650e6b907acSBarry Smith b->free_a = PETSC_TRUE; 1651e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 1652e811da20SHong Zhang } else { 1653e6b907acSBarry Smith b->free_a = PETSC_FALSE; 1654e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 1655ab93d7beSBarry Smith } 165649b5e25fSSatish Balay 1657d0f46423SBarry Smith B->rmap->bs = bs; 165849b5e25fSSatish Balay b->bs2 = bs2; 16596c6c5352SBarry Smith b->nz = 0; 1660b32cb4a7SJed Brown b->maxnz = nz; 1661153ea458SHong Zhang 166216cdd363SHong Zhang b->inew = 0; 166316cdd363SHong Zhang b->jnew = 0; 166416cdd363SHong Zhang b->anew = 0; 166516cdd363SHong Zhang b->a2anew = 0; 16661a3463dfSHong Zhang b->permute = PETSC_FALSE; 16672576faa2SJed Brown if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);} 1668c464158bSHong Zhang PetscFunctionReturn(0); 1669c464158bSHong Zhang } 1670153ea458SHong Zhang 167138f409ebSLisandro Dalcin #undef __FUNCT__ 167238f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ" 167338f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[], const PetscScalar V[]) 167438f409ebSLisandro Dalcin { 167538f409ebSLisandro Dalcin PetscInt i,j,m,nz,nz_max=0,*nnz; 167638f409ebSLisandro Dalcin PetscScalar *values=0; 167738f409ebSLisandro Dalcin PetscBool roworiented = ((Mat_SeqSBAIJ*)B->data)->roworiented; 167838f409ebSLisandro Dalcin PetscErrorCode ierr; 167938f409ebSLisandro Dalcin PetscFunctionBegin; 168038f409ebSLisandro Dalcin if (bs < 1) SETERRQ1(PetscObjectComm((PetscObject)B),PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 168138f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 168238f409ebSLisandro Dalcin ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 168338f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 168438f409ebSLisandro Dalcin ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 168538f409ebSLisandro Dalcin ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 168638f409ebSLisandro Dalcin m = B->rmap->n/bs; 168738f409ebSLisandro Dalcin 168838f409ebSLisandro Dalcin if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 1689*854ce69bSBarry Smith ierr = PetscMalloc1(m+1,&nnz);CHKERRQ(ierr); 169038f409ebSLisandro Dalcin for (i=0; i<m; i++) { 169138f409ebSLisandro Dalcin nz = ii[i+1] - ii[i]; 169238f409ebSLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D has a negative number of columns %D",i,nz); 169338f409ebSLisandro Dalcin nz_max = PetscMax(nz_max,nz); 169438f409ebSLisandro Dalcin nnz[i] = nz; 169538f409ebSLisandro Dalcin } 169638f409ebSLisandro Dalcin ierr = MatSeqSBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 169738f409ebSLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 169838f409ebSLisandro Dalcin 169938f409ebSLisandro Dalcin values = (PetscScalar*)V; 170038f409ebSLisandro Dalcin if (!values) { 17011795a4d1SJed Brown ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 170238f409ebSLisandro Dalcin } 170338f409ebSLisandro Dalcin for (i=0; i<m; i++) { 170438f409ebSLisandro Dalcin PetscInt ncols = ii[i+1] - ii[i]; 170538f409ebSLisandro Dalcin const PetscInt *icols = jj + ii[i]; 170638f409ebSLisandro Dalcin if (!roworiented || bs == 1) { 170738f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 170838f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 170938f409ebSLisandro Dalcin } else { 171038f409ebSLisandro Dalcin for (j=0; j<ncols; j++) { 171138f409ebSLisandro Dalcin const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 171238f409ebSLisandro Dalcin ierr = MatSetValuesBlocked_SeqSBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 171338f409ebSLisandro Dalcin } 171438f409ebSLisandro Dalcin } 171538f409ebSLisandro Dalcin } 171638f409ebSLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 171738f409ebSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 171838f409ebSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 171938f409ebSLisandro Dalcin ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 172038f409ebSLisandro Dalcin PetscFunctionReturn(0); 172138f409ebSLisandro Dalcin } 172238f409ebSLisandro Dalcin 1723db4efbfdSBarry Smith /* 1724db4efbfdSBarry Smith This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization 1725db4efbfdSBarry Smith */ 17268b1456e3SHong Zhang #undef __FUNCT__ 1727d595f711SHong Zhang #define __FUNCT__ "MatSeqSBAIJSetNumericFactorization_inplace" 1728ace3abfcSBarry Smith PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B,PetscBool natural) 1729db4efbfdSBarry Smith { 1730db4efbfdSBarry Smith PetscErrorCode ierr; 1731ace3abfcSBarry Smith PetscBool flg = PETSC_FALSE; 1732db4efbfdSBarry Smith PetscInt bs = B->rmap->bs; 1733db4efbfdSBarry Smith 1734db4efbfdSBarry Smith PetscFunctionBegin; 17350298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_no_unroll",&flg,NULL);CHKERRQ(ierr); 1736db4efbfdSBarry Smith if (flg) bs = 8; 1737db4efbfdSBarry Smith 1738db4efbfdSBarry Smith if (!natural) { 1739db4efbfdSBarry Smith switch (bs) { 1740db4efbfdSBarry Smith case 1: 1741d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace; 1742db4efbfdSBarry Smith break; 1743db4efbfdSBarry Smith case 2: 1744db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 1745db4efbfdSBarry Smith break; 1746db4efbfdSBarry Smith case 3: 1747db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 1748db4efbfdSBarry Smith break; 1749db4efbfdSBarry Smith case 4: 1750db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 1751db4efbfdSBarry Smith break; 1752db4efbfdSBarry Smith case 5: 1753db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 1754db4efbfdSBarry Smith break; 1755db4efbfdSBarry Smith case 6: 1756db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 1757db4efbfdSBarry Smith break; 1758db4efbfdSBarry Smith case 7: 1759db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 1760db4efbfdSBarry Smith break; 1761db4efbfdSBarry Smith default: 1762db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N; 1763db4efbfdSBarry Smith break; 1764db4efbfdSBarry Smith } 1765db4efbfdSBarry Smith } else { 1766db4efbfdSBarry Smith switch (bs) { 1767db4efbfdSBarry Smith case 1: 1768d595f711SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace; 1769db4efbfdSBarry Smith break; 1770db4efbfdSBarry Smith case 2: 1771db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 1772db4efbfdSBarry Smith break; 1773db4efbfdSBarry Smith case 3: 1774db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 1775db4efbfdSBarry Smith break; 1776db4efbfdSBarry Smith case 4: 1777db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 1778db4efbfdSBarry Smith break; 1779db4efbfdSBarry Smith case 5: 1780db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 1781db4efbfdSBarry Smith break; 1782db4efbfdSBarry Smith case 6: 1783db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 1784db4efbfdSBarry Smith break; 1785db4efbfdSBarry Smith case 7: 1786db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 1787db4efbfdSBarry Smith break; 1788db4efbfdSBarry Smith default: 1789db4efbfdSBarry Smith B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering; 1790db4efbfdSBarry Smith break; 1791db4efbfdSBarry Smith } 1792db4efbfdSBarry Smith } 1793db4efbfdSBarry Smith PetscFunctionReturn(0); 1794db4efbfdSBarry Smith } 1795db4efbfdSBarry Smith 17968cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 17978cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType,MatReuse,Mat*); 1798d769727bSBarry Smith 17995c9eb25fSBarry Smith #undef __FUNCT__ 18005c9eb25fSBarry Smith #define __FUNCT__ "MatGetFactor_seqsbaij_petsc" 18018cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A,MatFactorType ftype,Mat *B) 18025c9eb25fSBarry Smith { 1803d0f46423SBarry Smith PetscInt n = A->rmap->n; 18045c9eb25fSBarry Smith PetscErrorCode ierr; 18055c9eb25fSBarry Smith 18065c9eb25fSBarry Smith PetscFunctionBegin; 18070e92d65fSHong Zhang #if defined(PETSC_USE_COMPLEX) 18080e92d65fSHong Zhang if (A->hermitian) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Hermitian Factor is not supported"); 18090e92d65fSHong Zhang #endif 1810ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 18115c9eb25fSBarry Smith ierr = MatSetSizes(*B,n,n,n,n);CHKERRQ(ierr); 18125c9eb25fSBarry Smith if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 18135c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQSBAIJ);CHKERRQ(ierr); 18140298fd71SBarry Smith ierr = MatSeqSBAIJSetPreallocation(*B,A->rmap->bs,MAT_SKIP_ALLOCATION,NULL);CHKERRQ(ierr); 181526fbe8dcSKarl Rupp 18167b056e98SHong Zhang (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ; 1817c6d0d4f0SHong Zhang (*B)->ops->iccfactorsymbolic = MatICCFactorSymbolic_SeqSBAIJ; 1818e32f2f54SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor type not supported"); 1819d5f3da31SBarry Smith (*B)->factortype = ftype; 18205c9eb25fSBarry Smith PetscFunctionReturn(0); 18215c9eb25fSBarry Smith } 18225c9eb25fSBarry Smith 18230bad9183SKris Buschelman /*MC 1824fafad747SKris Buschelman MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices, 18250bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 18260bad9183SKris Buschelman 1827828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you 182871dad5bbSBarry Smith can call MatSetOption(Mat, MAT_HERMITIAN); after MatAssemblyEnd() 1829828413b8SBarry Smith 18300bad9183SKris Buschelman Options Database Keys: 18310bad9183SKris Buschelman . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions() 18320bad9183SKris Buschelman 183371dad5bbSBarry Smith Notes: By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not 183471dad5bbSBarry Smith stored and it is assumed they symmetric to the upper triangular). If you call MatSetOption(Mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_FALSE) or use 183571dad5bbSBarry Smith the options database -mat_ignore_lower_triangular false it will generate an error if you try to set a value in the lower triangular portion. 183671dad5bbSBarry Smith 183771dad5bbSBarry Smith 18380bad9183SKris Buschelman Level: beginner 18390bad9183SKris Buschelman 18400bad9183SKris Buschelman .seealso: MatCreateSeqSBAIJ 18410bad9183SKris Buschelman M*/ 18420bad9183SKris Buschelman 18438cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqSBSTRM(Mat, MatType,MatReuse,Mat*); 1844aa5a9175SDahai Guo 1845a23d5eceSKris Buschelman #undef __FUNCT__ 1846a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ" 18478cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B) 1848a23d5eceSKris Buschelman { 1849a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 1850dfbe8321SBarry Smith PetscErrorCode ierr; 185113f74950SBarry Smith PetscMPIInt size; 1852ace3abfcSBarry Smith PetscBool no_unroll = PETSC_FALSE,no_inode = PETSC_FALSE; 1853a23d5eceSKris Buschelman 1854a23d5eceSKris Buschelman PetscFunctionBegin; 1855ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1856e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1857a23d5eceSKris Buschelman 1858b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1859a23d5eceSKris Buschelman B->data = (void*)b; 1860a23d5eceSKris Buschelman ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 186126fbe8dcSKarl Rupp 1862a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1863a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1864a23d5eceSKris Buschelman b->row = 0; 1865a23d5eceSKris Buschelman b->icol = 0; 1866a23d5eceSKris Buschelman b->reallocs = 0; 1867a23d5eceSKris Buschelman b->saved_values = 0; 18680def2e27SBarry Smith b->inode.limit = 5; 18690def2e27SBarry Smith b->inode.max_limit = 5; 1870a23d5eceSKris Buschelman 1871a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1872a23d5eceSKris Buschelman b->nonew = 0; 1873a23d5eceSKris Buschelman b->diag = 0; 1874a23d5eceSKris Buschelman b->solve_work = 0; 1875a23d5eceSKris Buschelman b->mult_work = 0; 1876a23d5eceSKris Buschelman B->spptr = 0; 1877f2cbd3d5SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 1878a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 1879a23d5eceSKris Buschelman 1880a23d5eceSKris Buschelman b->inew = 0; 1881a23d5eceSKris Buschelman b->jnew = 0; 1882a23d5eceSKris Buschelman b->anew = 0; 1883a23d5eceSKris Buschelman b->a2anew = 0; 1884a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1885a23d5eceSKris Buschelman 188671dad5bbSBarry Smith b->ignore_ltriangular = PETSC_TRUE; 188726fbe8dcSKarl Rupp 18880298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_ignore_lower_triangular",&b->ignore_ltriangular,NULL);CHKERRQ(ierr); 1889941593c8SHong Zhang 1890f5edf698SHong Zhang b->getrow_utriangular = PETSC_FALSE; 189126fbe8dcSKarl Rupp 18920298fd71SBarry Smith ierr = PetscOptionsGetBool(((PetscObject)B)->prefix,"-mat_getrow_uppertriangular",&b->getrow_utriangular,NULL);CHKERRQ(ierr); 1893f5edf698SHong Zhang 1894bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSBAIJ);CHKERRQ(ierr); 1895bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr); 1896bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr); 1897bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr); 1898bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr); 1899bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr); 190038f409ebSLisandro Dalcin ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSBAIJSetPreallocationCSR_C",MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ);CHKERRQ(ierr); 1901bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsbaij_seqsbstrm_C",MatConvert_SeqSBAIJ_SeqSBSTRM);CHKERRQ(ierr); 190223ce1328SBarry Smith 190323ce1328SBarry Smith B->symmetric = PETSC_TRUE; 190423ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 190523ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 190623ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 190726fbe8dcSKarl Rupp 190817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSBAIJ);CHKERRQ(ierr); 19090def2e27SBarry Smith 1910ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),((PetscObject)B)->prefix,"Options for SEQSBAIJ matrix","Mat");CHKERRQ(ierr); 19110298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for inodes (slower)",NULL,no_unroll,&no_unroll,NULL);CHKERRQ(ierr); 191226fbe8dcSKarl Rupp if (no_unroll) { 191326fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_unroll\n");CHKERRQ(ierr); 191426fbe8dcSKarl Rupp } 19150298fd71SBarry Smith ierr = PetscOptionsBool("-mat_no_inode","Do not optimize for inodes (slower)",NULL,no_inode,&no_inode,NULL);CHKERRQ(ierr); 191626fbe8dcSKarl Rupp if (no_inode) { 191726fbe8dcSKarl Rupp ierr = PetscInfo(B,"Not using Inode routines due to -mat_no_inode\n");CHKERRQ(ierr); 191826fbe8dcSKarl Rupp } 19190298fd71SBarry Smith ierr = PetscOptionsInt("-mat_inode_limit","Do not use inodes larger then this value",NULL,b->inode.limit,&b->inode.limit,NULL);CHKERRQ(ierr); 19200def2e27SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 1921ace3abfcSBarry Smith b->inode.use = (PetscBool)(!(no_unroll || no_inode)); 19220def2e27SBarry Smith if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit; 1923a23d5eceSKris Buschelman PetscFunctionReturn(0); 1924a23d5eceSKris Buschelman } 1925a23d5eceSKris Buschelman 1926a23d5eceSKris Buschelman #undef __FUNCT__ 1927a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation" 1928a23d5eceSKris Buschelman /*@C 1929a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 1930a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 1931a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 1932a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 1933a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 1934a23d5eceSKris Buschelman 1935a23d5eceSKris Buschelman Collective on Mat 1936a23d5eceSKris Buschelman 1937a23d5eceSKris Buschelman Input Parameters: 19381c4f3114SJed Brown + B - the symmetric matrix 1939bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 1940bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 1941a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 1942a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 19430298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 1944a23d5eceSKris Buschelman 1945a23d5eceSKris Buschelman Options Database Keys: 1946a23d5eceSKris Buschelman . -mat_no_unroll - uses code that does not unroll the loops in the 1947a23d5eceSKris Buschelman block calculations (much slower) 1948db4efbfdSBarry Smith . -mat_block_size - size of the blocks to use (only works if a negative bs is passed in 1949a23d5eceSKris Buschelman 1950a23d5eceSKris Buschelman Level: intermediate 1951a23d5eceSKris Buschelman 1952a23d5eceSKris Buschelman Notes: 1953a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 19540298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1955a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 1956a23d5eceSKris Buschelman 1957aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 1958aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1959aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 1960aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 1961aa95bbe8SBarry Smith 196249a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 196349a6f317SBarry Smith 196449a6f317SBarry Smith 196569b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 1966a23d5eceSKris Buschelman @*/ 19677087cfbeSBarry Smith PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 196813f74950SBarry Smith { 19694ac538c5SBarry Smith PetscErrorCode ierr; 1970a23d5eceSKris Buschelman 1971a23d5eceSKris Buschelman PetscFunctionBegin; 19726ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19736ba663aaSJed Brown PetscValidType(B,1); 19746ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 19754ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr); 1976a23d5eceSKris Buschelman PetscFunctionReturn(0); 1977a23d5eceSKris Buschelman } 197849b5e25fSSatish Balay 19794a2ae208SSatish Balay #undef __FUNCT__ 198038f409ebSLisandro Dalcin #define __FUNCT__ "MatSeqSBAIJSetPreallocationCSR" 198138f409ebSLisandro Dalcin /*@C 198238f409ebSLisandro Dalcin MatSeqSBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in symmetric block AIJ format. 198338f409ebSLisandro Dalcin 198438f409ebSLisandro Dalcin Input Parameters: 19851c4f3114SJed Brown + B - the matrix 198638f409ebSLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 198738f409ebSLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 198838f409ebSLisandro Dalcin - v - optional values in the matrix 198938f409ebSLisandro Dalcin 199038f409ebSLisandro Dalcin Level: developer 199138f409ebSLisandro Dalcin 199238f409ebSLisandro Dalcin Notes: 199338f409ebSLisandro Dalcin The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 199438f409ebSLisandro Dalcin may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 199538f409ebSLisandro Dalcin over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 199638f409ebSLisandro Dalcin MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 199738f409ebSLisandro Dalcin block column and the second index is over columns within a block. 199838f409ebSLisandro Dalcin 199938f409ebSLisandro Dalcin .keywords: matrix, block, aij, compressed row, sparse 200038f409ebSLisandro Dalcin 200138f409ebSLisandro Dalcin .seealso: MatCreate(), MatCreateSeqSBAIJ(), MatSetValuesBlocked(), MatSeqSBAIJSetPreallocation(), MATSEQSBAIJ 200238f409ebSLisandro Dalcin @*/ 200338f409ebSLisandro Dalcin PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 200438f409ebSLisandro Dalcin { 200538f409ebSLisandro Dalcin PetscErrorCode ierr; 200638f409ebSLisandro Dalcin 200738f409ebSLisandro Dalcin PetscFunctionBegin; 200838f409ebSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_CLASSID,1); 200938f409ebSLisandro Dalcin PetscValidType(B,1); 201038f409ebSLisandro Dalcin PetscValidLogicalCollectiveInt(B,bs,2); 201138f409ebSLisandro Dalcin ierr = PetscTryMethod(B,"MatSeqSBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 201238f409ebSLisandro Dalcin PetscFunctionReturn(0); 201338f409ebSLisandro Dalcin } 201438f409ebSLisandro Dalcin 201538f409ebSLisandro Dalcin #undef __FUNCT__ 20164a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ" 2017c464158bSHong Zhang /*@C 2018c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 2019c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 2020c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 2021c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 2022c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 202349b5e25fSSatish Balay 2024c464158bSHong Zhang Collective on MPI_Comm 2025c464158bSHong Zhang 2026c464158bSHong Zhang Input Parameters: 2027c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2028bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2029bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2030c464158bSHong Zhang . m - number of rows, or number of columns 2031c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 2032744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 20330298fd71SBarry Smith diagonal portion of each block (possibly different for each block row) or NULL 2034c464158bSHong Zhang 2035c464158bSHong Zhang Output Parameter: 2036c464158bSHong Zhang . A - the symmetric matrix 2037c464158bSHong Zhang 2038c464158bSHong Zhang Options Database Keys: 2039c464158bSHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 2040c464158bSHong Zhang block calculations (much slower) 2041c464158bSHong Zhang . -mat_block_size - size of the blocks to use 2042c464158bSHong Zhang 2043c464158bSHong Zhang Level: intermediate 2044c464158bSHong Zhang 2045175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2046ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2047175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2048175b88e8SBarry Smith 2049c464158bSHong Zhang Notes: 20506d6d819aSHong Zhang The number of rows and columns must be divisible by blocksize. 20516d6d819aSHong Zhang This matrix type does not support complex Hermitian operation. 2052c464158bSHong Zhang 2053c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 20540298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 2055a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 2056c464158bSHong Zhang 205749a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 205849a6f317SBarry Smith 205969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateSBAIJ() 2060c464158bSHong Zhang @*/ 20617087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 2062c464158bSHong Zhang { 2063dfbe8321SBarry Smith PetscErrorCode ierr; 2064c464158bSHong Zhang 2065c464158bSHong Zhang PetscFunctionBegin; 2066f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2067f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2068c464158bSHong Zhang ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 2069ab93d7beSBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 207049b5e25fSSatish Balay PetscFunctionReturn(0); 207149b5e25fSSatish Balay } 207249b5e25fSSatish Balay 20734a2ae208SSatish Balay #undef __FUNCT__ 20744a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ" 2075dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 207649b5e25fSSatish Balay { 207749b5e25fSSatish Balay Mat C; 207849b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 20796849ba73SBarry Smith PetscErrorCode ierr; 2080b40805acSSatish Balay PetscInt i,mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 208149b5e25fSSatish Balay 208249b5e25fSSatish Balay PetscFunctionBegin; 2083e32f2f54SBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 208449b5e25fSSatish Balay 208549b5e25fSSatish Balay *B = 0; 2086ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr); 2087d0f46423SBarry Smith ierr = MatSetSizes(C,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 20888e9a0fb8SHong Zhang ierr = MatSetType(C,MATSEQSBAIJ);CHKERRQ(ierr); 20891d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2090692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 2091692f9cbeSHong Zhang 2092273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2093d5f3da31SBarry Smith C->factortype = A->factortype; 209449b5e25fSSatish Balay c->row = 0; 209549b5e25fSSatish Balay c->icol = 0; 209649b5e25fSSatish Balay c->saved_values = 0; 2097a9817697SBarry Smith c->keepnonzeropattern = a->keepnonzeropattern; 209849b5e25fSSatish Balay C->assembled = PETSC_TRUE; 209949b5e25fSSatish Balay 21001e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 21011e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 210249b5e25fSSatish Balay c->bs2 = a->bs2; 210349b5e25fSSatish Balay c->mbs = a->mbs; 210449b5e25fSSatish Balay c->nbs = a->nbs; 210549b5e25fSSatish Balay 2106c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2107c760cd28SBarry Smith c->imax = a->imax; 2108c760cd28SBarry Smith c->ilen = a->ilen; 2109c760cd28SBarry Smith c->free_imax_ilen = PETSC_FALSE; 2110c760cd28SBarry Smith } else { 2111dcca6d9dSJed Brown ierr = PetscMalloc2((mbs+1),&c->imax,(mbs+1),&c->ilen);CHKERRQ(ierr); 21123bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,2*(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 211349b5e25fSSatish Balay for (i=0; i<mbs; i++) { 211449b5e25fSSatish Balay c->imax[i] = a->imax[i]; 211549b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 211649b5e25fSSatish Balay } 2117c760cd28SBarry Smith c->free_imax_ilen = PETSC_TRUE; 2118c760cd28SBarry Smith } 211949b5e25fSSatish Balay 212049b5e25fSSatish Balay /* allocate the matrix space */ 21214da8f245SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2122785e854fSJed Brown ierr = PetscMalloc1(bs2*nz,&c->a);CHKERRQ(ierr); 21233bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 212444e1c64aSLisandro Dalcin c->i = a->i; 212544e1c64aSLisandro Dalcin c->j = a->j; 21264da8f245SBarry Smith c->singlemalloc = PETSC_FALSE; 212744e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21284da8f245SBarry Smith c->free_ij = PETSC_FALSE; 21294da8f245SBarry Smith c->parent = A; 21304da8f245SBarry Smith ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); 21314da8f245SBarry Smith ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21324da8f245SBarry Smith ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 21334da8f245SBarry Smith } else { 2134dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr); 213513f74950SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 21363bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt) + nz*(bs2*sizeof(MatScalar) + sizeof(PetscInt)));CHKERRQ(ierr); 21374da8f245SBarry Smith c->singlemalloc = PETSC_TRUE; 213844e1c64aSLisandro Dalcin c->free_a = PETSC_TRUE; 21394da8f245SBarry Smith c->free_ij = PETSC_TRUE; 21404da8f245SBarry Smith } 214149b5e25fSSatish Balay if (mbs > 0) { 21424da8f245SBarry Smith if (cpvalues != MAT_SHARE_NONZERO_PATTERN) { 214313f74950SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 21444da8f245SBarry Smith } 214549b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 214649b5e25fSSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 214749b5e25fSSatish Balay } else { 214849b5e25fSSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 214949b5e25fSSatish Balay } 2150a1c3900fSBarry Smith if (a->jshort) { 215144e1c64aSLisandro Dalcin /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */ 215244e1c64aSLisandro Dalcin /* if the parent matrix is reassembled, this child matrix will never notice */ 2153785e854fSJed Brown ierr = PetscMalloc1(nz,&c->jshort);CHKERRQ(ierr); 21543bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,nz*sizeof(unsigned short));CHKERRQ(ierr); 2155a1c3900fSBarry Smith ierr = PetscMemcpy(c->jshort,a->jshort,nz*sizeof(unsigned short));CHKERRQ(ierr); 215626fbe8dcSKarl Rupp 21574da8f245SBarry Smith c->free_jshort = PETSC_TRUE; 21584da8f245SBarry Smith } 2159a1c3900fSBarry Smith } 216049b5e25fSSatish Balay 216149b5e25fSSatish Balay c->roworiented = a->roworiented; 216249b5e25fSSatish Balay c->nonew = a->nonew; 216349b5e25fSSatish Balay 216449b5e25fSSatish Balay if (a->diag) { 2165c760cd28SBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 2166c760cd28SBarry Smith c->diag = a->diag; 2167c760cd28SBarry Smith c->free_diag = PETSC_FALSE; 2168c760cd28SBarry Smith } else { 2169785e854fSJed Brown ierr = PetscMalloc1(mbs,&c->diag);CHKERRQ(ierr); 21703bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,mbs*sizeof(PetscInt));CHKERRQ(ierr); 217126fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 2172c760cd28SBarry Smith c->free_diag = PETSC_TRUE; 2173c760cd28SBarry Smith } 217444e1c64aSLisandro Dalcin } 21756c6c5352SBarry Smith c->nz = a->nz; 2176f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 217749b5e25fSSatish Balay c->solve_work = 0; 217849b5e25fSSatish Balay c->mult_work = 0; 217926fbe8dcSKarl Rupp 218049b5e25fSSatish Balay *B = C; 2181140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 218249b5e25fSSatish Balay PetscFunctionReturn(0); 218349b5e25fSSatish Balay } 218449b5e25fSSatish Balay 21854a2ae208SSatish Balay #undef __FUNCT__ 21865bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqSBAIJ" 2187112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqSBAIJ(Mat newmat,PetscViewer viewer) 21882f480046SShri Abhyankar { 21892f480046SShri Abhyankar Mat_SeqSBAIJ *a; 21902f480046SShri Abhyankar PetscErrorCode ierr; 21912f480046SShri Abhyankar int fd; 21922f480046SShri Abhyankar PetscMPIInt size; 21932f480046SShri Abhyankar PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 21942f480046SShri Abhyankar PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount; 21952f480046SShri Abhyankar PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols; 21962f480046SShri Abhyankar PetscInt *masked,nmask,tmp,bs2,ishift; 21972f480046SShri Abhyankar PetscScalar *aa; 2198ce94432eSBarry Smith MPI_Comm comm; 21992f480046SShri Abhyankar 22002f480046SShri Abhyankar PetscFunctionBegin; 2201ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 22020298fd71SBarry Smith ierr = PetscOptionsGetInt(((PetscObject)newmat)->prefix,"-matload_block_size",&bs,NULL);CHKERRQ(ierr); 22032f480046SShri Abhyankar bs2 = bs*bs; 22042f480046SShri Abhyankar 22052f480046SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 22062f480046SShri Abhyankar if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor"); 22072f480046SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 22082f480046SShri Abhyankar ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 22092f480046SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 22102f480046SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 22112f480046SShri Abhyankar 22122f480046SShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ"); 22132f480046SShri Abhyankar 22142f480046SShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 22152f480046SShri Abhyankar 22162f480046SShri Abhyankar /* 22172f480046SShri Abhyankar This code adds extra rows to make sure the number of rows is 22182f480046SShri Abhyankar divisible by the blocksize 22192f480046SShri Abhyankar */ 22202f480046SShri Abhyankar mbs = M/bs; 22212f480046SShri Abhyankar extra_rows = bs - M + bs*(mbs); 22222f480046SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 22232f480046SShri Abhyankar else mbs++; 22242f480046SShri Abhyankar if (extra_rows) { 22252f480046SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 22262f480046SShri Abhyankar } 22272f480046SShri Abhyankar 22282f480046SShri Abhyankar /* Set global sizes if not already set */ 22292f480046SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) { 22302f480046SShri Abhyankar ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 22312f480046SShri Abhyankar } else { /* Check if the matrix global sizes are correct */ 22322f480046SShri Abhyankar ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr); 22332f480046SShri Abhyankar if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols); 22342f480046SShri Abhyankar } 22352f480046SShri Abhyankar 22362f480046SShri Abhyankar /* read in row lengths */ 2237*854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 22382f480046SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 22392f480046SShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 22402f480046SShri Abhyankar 22412f480046SShri Abhyankar /* read in column indices */ 2242*854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr); 22432f480046SShri Abhyankar ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 22442f480046SShri Abhyankar for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 22452f480046SShri Abhyankar 22462f480046SShri Abhyankar /* loop over row lengths determining block row lengths */ 22471795a4d1SJed Brown ierr = PetscCalloc1(mbs,&s_browlengths);CHKERRQ(ierr); 2248dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr); 22492f480046SShri Abhyankar ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 22502f480046SShri Abhyankar rowcount = 0; 22512f480046SShri Abhyankar nzcount = 0; 22522f480046SShri Abhyankar for (i=0; i<mbs; i++) { 22532f480046SShri Abhyankar nmask = 0; 22542f480046SShri Abhyankar for (j=0; j<bs; j++) { 22552f480046SShri Abhyankar kmax = rowlengths[rowcount]; 22562f480046SShri Abhyankar for (k=0; k<kmax; k++) { 22572f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 22582f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;} 22592f480046SShri Abhyankar } 22602f480046SShri Abhyankar rowcount++; 22612f480046SShri Abhyankar } 22622f480046SShri Abhyankar s_browlengths[i] += nmask; 22632f480046SShri Abhyankar 22642f480046SShri Abhyankar /* zero out the mask elements we set */ 22652f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 22662f480046SShri Abhyankar } 22672f480046SShri Abhyankar 22682f480046SShri Abhyankar /* Do preallocation */ 22692f480046SShri Abhyankar ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(newmat,bs,0,s_browlengths);CHKERRQ(ierr); 22702f480046SShri Abhyankar a = (Mat_SeqSBAIJ*)newmat->data; 22712f480046SShri Abhyankar 22722f480046SShri Abhyankar /* set matrix "i" values */ 22732f480046SShri Abhyankar a->i[0] = 0; 22742f480046SShri Abhyankar for (i=1; i<= mbs; i++) { 22752f480046SShri Abhyankar a->i[i] = a->i[i-1] + s_browlengths[i-1]; 22762f480046SShri Abhyankar a->ilen[i-1] = s_browlengths[i-1]; 22772f480046SShri Abhyankar } 22782f480046SShri Abhyankar a->nz = a->i[mbs]; 22792f480046SShri Abhyankar 22802f480046SShri Abhyankar /* read in nonzero values */ 2281*854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr); 22822f480046SShri Abhyankar ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 22832f480046SShri Abhyankar for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 22842f480046SShri Abhyankar 22852f480046SShri Abhyankar /* set "a" and "j" values into matrix */ 22862f480046SShri Abhyankar nzcount = 0; jcount = 0; 22872f480046SShri Abhyankar for (i=0; i<mbs; i++) { 22882f480046SShri Abhyankar nzcountb = nzcount; 22892f480046SShri Abhyankar nmask = 0; 22902f480046SShri Abhyankar for (j=0; j<bs; j++) { 22912f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 22922f480046SShri Abhyankar for (k=0; k<kmax; k++) { 22932f480046SShri Abhyankar tmp = jj[nzcount++]/bs; /* block col. index */ 22942f480046SShri Abhyankar if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;} 22952f480046SShri Abhyankar } 22962f480046SShri Abhyankar } 22972f480046SShri Abhyankar /* sort the masked values */ 22982f480046SShri Abhyankar ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 22992f480046SShri Abhyankar 23002f480046SShri Abhyankar /* set "j" values into matrix */ 23012f480046SShri Abhyankar maskcount = 1; 23022f480046SShri Abhyankar for (j=0; j<nmask; j++) { 23032f480046SShri Abhyankar a->j[jcount++] = masked[j]; 23042f480046SShri Abhyankar mask[masked[j]] = maskcount++; 23052f480046SShri Abhyankar } 23062f480046SShri Abhyankar 23072f480046SShri Abhyankar /* set "a" values into matrix */ 23082f480046SShri Abhyankar ishift = bs2*a->i[i]; 23092f480046SShri Abhyankar for (j=0; j<bs; j++) { 23102f480046SShri Abhyankar kmax = rowlengths[i*bs+j]; 23112f480046SShri Abhyankar for (k=0; k<kmax; k++) { 23122f480046SShri Abhyankar tmp = jj[nzcountb]/bs; /* block col. index */ 23132f480046SShri Abhyankar if (tmp >= i) { 23142f480046SShri Abhyankar block = mask[tmp] - 1; 23152f480046SShri Abhyankar point = jj[nzcountb] - bs*tmp; 23162f480046SShri Abhyankar idx = ishift + bs2*block + j + bs*point; 23172f480046SShri Abhyankar a->a[idx] = aa[nzcountb]; 23182f480046SShri Abhyankar } 23192f480046SShri Abhyankar nzcountb++; 23202f480046SShri Abhyankar } 23212f480046SShri Abhyankar } 23222f480046SShri Abhyankar /* zero out the mask elements we set */ 23232f480046SShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 23242f480046SShri Abhyankar } 23252f480046SShri Abhyankar if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 23262f480046SShri Abhyankar 23272f480046SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 23282f480046SShri Abhyankar ierr = PetscFree(s_browlengths);CHKERRQ(ierr); 23292f480046SShri Abhyankar ierr = PetscFree(aa);CHKERRQ(ierr); 23302f480046SShri Abhyankar ierr = PetscFree(jj);CHKERRQ(ierr); 23312f480046SShri Abhyankar ierr = PetscFree2(mask,masked);CHKERRQ(ierr); 23322f480046SShri Abhyankar 23332f480046SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23342f480046SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 23352f480046SShri Abhyankar PetscFunctionReturn(0); 23362f480046SShri Abhyankar } 23372f480046SShri Abhyankar 23382f480046SShri Abhyankar #undef __FUNCT__ 2339c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqSBAIJWithArrays" 2340c75a6043SHong Zhang /*@ 2341c75a6043SHong Zhang MatCreateSeqSBAIJWithArrays - Creates an sequential SBAIJ matrix using matrix elements 2342c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 2343c75a6043SHong Zhang 2344c75a6043SHong Zhang Collective on MPI_Comm 2345c75a6043SHong Zhang 2346c75a6043SHong Zhang Input Parameters: 2347c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 2348c75a6043SHong Zhang . bs - size of block 2349c75a6043SHong Zhang . m - number of rows 2350c75a6043SHong Zhang . n - number of columns 2351c75a6043SHong Zhang . i - row indices 2352c75a6043SHong Zhang . j - column indices 2353c75a6043SHong Zhang - a - matrix values 2354c75a6043SHong Zhang 2355c75a6043SHong Zhang Output Parameter: 2356c75a6043SHong Zhang . mat - the matrix 2357c75a6043SHong Zhang 2358dfb205c3SBarry Smith Level: advanced 2359c75a6043SHong Zhang 2360c75a6043SHong Zhang Notes: 2361c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 2362c75a6043SHong Zhang once the matrix is destroyed 2363c75a6043SHong Zhang 2364c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 2365c75a6043SHong Zhang 2366c75a6043SHong Zhang The i and j indices are 0 based 2367c75a6043SHong Zhang 2368dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the SBAIJ storage format (see the SBAIJ code to determine this). For block size of 1 2369dfb205c3SBarry Smith it is the regular CSR format excluding the lower triangular elements. 2370dfb205c3SBarry Smith 237169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSBAIJ(), MatCreateSeqSBAIJ() 2372c75a6043SHong Zhang 2373c75a6043SHong Zhang @*/ 23747087cfbeSBarry Smith PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat) 2375c75a6043SHong Zhang { 2376c75a6043SHong Zhang PetscErrorCode ierr; 2377c75a6043SHong Zhang PetscInt ii; 2378c75a6043SHong Zhang Mat_SeqSBAIJ *sbaij; 2379c75a6043SHong Zhang 2380c75a6043SHong Zhang PetscFunctionBegin; 2381e32f2f54SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 2382e32f2f54SBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 2383c75a6043SHong Zhang 2384c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 2385c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 2386c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQSBAIJ);CHKERRQ(ierr); 2387c75a6043SHong Zhang ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 2388c75a6043SHong Zhang sbaij = (Mat_SeqSBAIJ*)(*mat)->data; 2389dcca6d9dSJed Brown ierr = PetscMalloc2(m,&sbaij->imax,m,&sbaij->ilen);CHKERRQ(ierr); 23903bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr); 2391c75a6043SHong Zhang 2392c75a6043SHong Zhang sbaij->i = i; 2393c75a6043SHong Zhang sbaij->j = j; 2394c75a6043SHong Zhang sbaij->a = a; 239526fbe8dcSKarl Rupp 2396c75a6043SHong Zhang sbaij->singlemalloc = PETSC_FALSE; 2397c75a6043SHong Zhang sbaij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 2398e6b907acSBarry Smith sbaij->free_a = PETSC_FALSE; 2399e6b907acSBarry Smith sbaij->free_ij = PETSC_FALSE; 2400c75a6043SHong Zhang 2401c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 2402c75a6043SHong Zhang sbaij->ilen[ii] = sbaij->imax[ii] = i[ii+1] - i[ii]; 2403c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2404e32f2f54SBarry Smith if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 2405c75a6043SHong Zhang #endif 2406c75a6043SHong Zhang } 2407c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 2408c75a6043SHong Zhang for (ii=0; ii<sbaij->i[m]; ii++) { 2409e32f2f54SBarry Smith if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 2410e32f2f54SBarry Smith if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 2411c75a6043SHong Zhang } 2412c75a6043SHong Zhang #endif 2413c75a6043SHong Zhang 2414c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2415c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2416c75a6043SHong Zhang PetscFunctionReturn(0); 2417c75a6043SHong Zhang } 2418d06b337dSHong Zhang 241959f5e6ceSHong Zhang #undef __FUNCT__ 242059f5e6ceSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ" 242159f5e6ceSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 242259f5e6ceSHong Zhang { 242359f5e6ceSHong Zhang PetscErrorCode ierr; 242459f5e6ceSHong Zhang 242559f5e6ceSHong Zhang PetscFunctionBegin; 242659f5e6ceSHong Zhang ierr = MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr); 242759f5e6ceSHong Zhang PetscFunctionReturn(0); 242859f5e6ceSHong Zhang } 2429d06b337dSHong Zhang 2430d06b337dSHong Zhang 243149b5e25fSSatish Balay 243249b5e25fSSatish Balay 2433