xref: /petsc/src/mat/impls/sbaij/seq/sbaij.c (revision a96a251defc07734f733d1abf27b5765e87fdc8b)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
249b5e25fSSatish Balay 
349b5e25fSSatish Balay /*
4a1373b80SHong Zhang     Defines the basic matrix operations for the SBAIJ (compressed row)
549b5e25fSSatish Balay   matrix storage format.
649b5e25fSSatish Balay */
79e070d67SMatthew Knepley #include "src/mat/impls/baij/seq/baij.h"         /*I "petscmat.h" I*/
849b5e25fSSatish Balay #include "src/inline/spops.h"
9aec82049SSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
1049b5e25fSSatish Balay 
1149b5e25fSSatish Balay #define CHUNKSIZE  10
1249b5e25fSSatish Balay 
1349b5e25fSSatish Balay /*
1449b5e25fSSatish Balay      Checks for missing diagonals
1549b5e25fSSatish Balay */
164a2ae208SSatish Balay #undef __FUNCT__
174a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ"
18dfbe8321SBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A)
1949b5e25fSSatish Balay {
20045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
216849ba73SBarry Smith   PetscErrorCode ierr;
2213f74950SBarry Smith   PetscInt       *diag,*jj = a->j,i;
2349b5e25fSSatish Balay 
2449b5e25fSSatish Balay   PetscFunctionBegin;
25045c9aa0SHong Zhang   ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr);
2649b5e25fSSatish Balay   diag = a->diag;
2749b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
2877431f27SBarry Smith     if (jj[diag[i]] != i) SETERRQ1(PETSC_ERR_ARG_CORRUPT,"Matrix is missing diagonal number %D",i);
2949b5e25fSSatish Balay   }
3049b5e25fSSatish Balay   PetscFunctionReturn(0);
3149b5e25fSSatish Balay }
3249b5e25fSSatish Balay 
334a2ae208SSatish Balay #undef __FUNCT__
344a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ"
35dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A)
3649b5e25fSSatish Balay {
37045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
386849ba73SBarry Smith   PetscErrorCode ierr;
3913f74950SBarry Smith   PetscInt       i,mbs = a->mbs;
4049b5e25fSSatish Balay 
4149b5e25fSSatish Balay   PetscFunctionBegin;
4249b5e25fSSatish Balay   if (a->diag) PetscFunctionReturn(0);
4349b5e25fSSatish Balay 
4413f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
4552e6d16bSBarry Smith   ierr = PetscLogObjectMemory(A,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
46b424e231SHong Zhang   for (i=0; i<mbs; i++) a->diag[i] = a->i[i];
4749b5e25fSSatish Balay   PetscFunctionReturn(0);
4849b5e25fSSatish Balay }
4949b5e25fSSatish Balay 
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ"
5213f74950SBarry Smith static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
5349b5e25fSSatish Balay {
54a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
5513f74950SBarry Smith   PetscInt     n = a->mbs,i;
5649b5e25fSSatish Balay 
5749b5e25fSSatish Balay   PetscFunctionBegin;
58d3e5a4abSHong Zhang   *nn = n;
59a1373b80SHong Zhang   if (!ia) PetscFunctionReturn(0);
60a1373b80SHong Zhang 
61a6ece127SHong Zhang   if (oshift == 1) {
62a6ece127SHong Zhang     /* temporarily add 1 to i and j indices */
6313f74950SBarry Smith     PetscInt nz = a->i[n];
646c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]++;
65a1373b80SHong Zhang     for (i=0; i<n+1; i++) a->i[i]++;
66a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
67a1373b80SHong Zhang   } else {
68a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
69a6ece127SHong Zhang   }
7049b5e25fSSatish Balay   PetscFunctionReturn(0);
7149b5e25fSSatish Balay }
7249b5e25fSSatish Balay 
734a2ae208SSatish Balay #undef __FUNCT__
744a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ"
7513f74950SBarry Smith static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
7649b5e25fSSatish Balay {
77b7aaefc3SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
7813f74950SBarry Smith   PetscInt     i,n = a->mbs;
79a6ece127SHong Zhang 
8049b5e25fSSatish Balay   PetscFunctionBegin;
8149b5e25fSSatish Balay   if (!ia) PetscFunctionReturn(0);
82a6ece127SHong Zhang 
83a6ece127SHong Zhang   if (oshift == 1) {
8413f74950SBarry Smith     PetscInt nz = a->i[n]-1;
856c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]--;
86a6ece127SHong Zhang     for (i=0; i<n+1; i++) a->i[i]--;
87a6ece127SHong Zhang   }
88a6ece127SHong Zhang   PetscFunctionReturn(0);
8949b5e25fSSatish Balay }
9049b5e25fSSatish Balay 
914a2ae208SSatish Balay #undef __FUNCT__
924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ"
93dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
9449b5e25fSSatish Balay {
9549b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
96dfbe8321SBarry Smith   PetscErrorCode ierr;
9749b5e25fSSatish Balay 
9849b5e25fSSatish Balay   PetscFunctionBegin;
9977431f27SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->m,a->nz);
10049b5e25fSSatish Balay   if (!a->singlemalloc) {
101*a96a251dSBarry Smith     ierr = PetscFree(a->a);CHKERRQ(ierr);
10249b5e25fSSatish Balay     ierr = PetscFree(a->i);CHKERRQ(ierr);
10363c8bf9fSHong Zhang     ierr = PetscFree(a->j);CHKERRQ(ierr);
104*a96a251dSBarry Smith   } else {
105*a96a251dSBarry Smith     ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr);
10649b5e25fSSatish Balay   }
10749b5e25fSSatish Balay   if (a->row) {
10849b5e25fSSatish Balay     ierr = ISDestroy(a->row);CHKERRQ(ierr);
10949b5e25fSSatish Balay   }
11049b5e25fSSatish Balay   if (a->diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
11149b5e25fSSatish Balay   if (a->ilen) {ierr = PetscFree(a->ilen);CHKERRQ(ierr);}
11249b5e25fSSatish Balay   if (a->imax) {ierr = PetscFree(a->imax);CHKERRQ(ierr);}
11349b5e25fSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
114d59c15a7SBarry Smith   if (a->solve_work)  {ierr = PetscFree(a->solve_work);CHKERRQ(ierr);}
115d59c15a7SBarry Smith   if (a->solves_work) {ierr = PetscFree(a->solves_work);CHKERRQ(ierr);}
116d59c15a7SBarry Smith   if (a->mult_work)   {ierr = PetscFree(a->mult_work);CHKERRQ(ierr);}
11749b5e25fSSatish Balay   if (a->saved_values) {ierr = PetscFree(a->saved_values);CHKERRQ(ierr);}
118c4319e64SHong Zhang   if (a->xtoy) {ierr = PetscFree(a->xtoy);CHKERRQ(ierr);}
1191a3463dfSHong Zhang 
1201a3463dfSHong Zhang   if (a->inew){
1211a3463dfSHong Zhang     ierr = PetscFree(a->inew);CHKERRQ(ierr);
1221a3463dfSHong Zhang     a->inew = 0;
1231a3463dfSHong Zhang   }
12449b5e25fSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
125901853e0SKris Buschelman 
126901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
130901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C","",PETSC_NULL);CHKERRQ(ierr);
131901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
13249b5e25fSSatish Balay   PetscFunctionReturn(0);
13349b5e25fSSatish Balay }
13449b5e25fSSatish Balay 
1354a2ae208SSatish Balay #undef __FUNCT__
1364a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ"
137dfbe8321SBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op)
13849b5e25fSSatish Balay {
139045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
14063ba0a88SBarry Smith   PetscErrorCode ierr;
14149b5e25fSSatish Balay 
14249b5e25fSSatish Balay   PetscFunctionBegin;
1434d9d31abSKris Buschelman   switch (op) {
1444d9d31abSKris Buschelman   case MAT_ROW_ORIENTED:
1454d9d31abSKris Buschelman     a->roworiented = PETSC_TRUE;
1464d9d31abSKris Buschelman     break;
1474d9d31abSKris Buschelman   case MAT_COLUMN_ORIENTED:
1484d9d31abSKris Buschelman     a->roworiented = PETSC_FALSE;
1494d9d31abSKris Buschelman     break;
1504d9d31abSKris Buschelman   case MAT_COLUMNS_SORTED:
1514d9d31abSKris Buschelman     a->sorted = PETSC_TRUE;
1524d9d31abSKris Buschelman     break;
1534d9d31abSKris Buschelman   case MAT_COLUMNS_UNSORTED:
1544d9d31abSKris Buschelman     a->sorted = PETSC_FALSE;
1554d9d31abSKris Buschelman     break;
1564d9d31abSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1574d9d31abSKris Buschelman     a->keepzeroedrows = PETSC_TRUE;
1584d9d31abSKris Buschelman     break;
1594d9d31abSKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1604d9d31abSKris Buschelman     a->nonew = 1;
1614d9d31abSKris Buschelman     break;
1624d9d31abSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1634d9d31abSKris Buschelman     a->nonew = -1;
1644d9d31abSKris Buschelman     break;
1654d9d31abSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1664d9d31abSKris Buschelman     a->nonew = -2;
1674d9d31abSKris Buschelman     break;
1684d9d31abSKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1694d9d31abSKris Buschelman     a->nonew = 0;
1704d9d31abSKris Buschelman     break;
1714d9d31abSKris Buschelman   case MAT_ROWS_SORTED:
1724d9d31abSKris Buschelman   case MAT_ROWS_UNSORTED:
1734d9d31abSKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1744d9d31abSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1754d9d31abSKris Buschelman   case MAT_USE_HASH_TABLE:
17663ba0a88SBarry Smith     ierr = PetscLogInfo((A,"MatSetOption_SeqSBAIJ:Option ignored\n"));CHKERRQ(ierr);
1774d9d31abSKris Buschelman     break;
1784d9d31abSKris Buschelman   case MAT_NO_NEW_DIAGONALS:
17929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1809a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
1819a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
1829a4540c5SBarry Smith   case MAT_HERMITIAN:
1839a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
18477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
18577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1869a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
1879a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1889a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
189941593c8SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
190941593c8SHong Zhang     a->ignore_ltriangular = PETSC_TRUE;
191941593c8SHong Zhang     break;
192941593c8SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
193941593c8SHong Zhang     a->ignore_ltriangular = PETSC_FALSE;
19477e54ba9SKris Buschelman     break;
1954d9d31abSKris Buschelman   default:
19629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
19749b5e25fSSatish Balay   }
19849b5e25fSSatish Balay   PetscFunctionReturn(0);
19949b5e25fSSatish Balay }
20049b5e25fSSatish Balay 
2014a2ae208SSatish Balay #undef __FUNCT__
2024a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ"
20313f74950SBarry Smith PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **v)
20449b5e25fSSatish Balay {
20549b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
2066849ba73SBarry Smith   PetscErrorCode ierr;
20713f74950SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*cols_i,bs2;
20849b5e25fSSatish Balay   MatScalar      *aa,*aa_i;
20987828ca2SBarry Smith   PetscScalar    *v_i;
21049b5e25fSSatish Balay 
21149b5e25fSSatish Balay   PetscFunctionBegin;
212521d7252SBarry Smith   bs  = A->bs;
21349b5e25fSSatish Balay   ai  = a->i;
21449b5e25fSSatish Balay   aj  = a->j;
21549b5e25fSSatish Balay   aa  = a->a;
21649b5e25fSSatish Balay   bs2 = a->bs2;
21749b5e25fSSatish Balay 
21877431f27SBarry Smith   if (row < 0 || row >= A->m) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "Row %D out of range", row);
21949b5e25fSSatish Balay 
22049b5e25fSSatish Balay   bn  = row/bs;   /* Block number */
22149b5e25fSSatish Balay   bp  = row % bs; /* Block position */
22249b5e25fSSatish Balay   M   = ai[bn+1] - ai[bn];
22349b5e25fSSatish Balay   *ncols = bs*M;
22449b5e25fSSatish Balay 
22549b5e25fSSatish Balay   if (v) {
22649b5e25fSSatish Balay     *v = 0;
22749b5e25fSSatish Balay     if (*ncols) {
22887828ca2SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscScalar),v);CHKERRQ(ierr);
22949b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
23049b5e25fSSatish Balay         v_i  = *v + i*bs;
23149b5e25fSSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
23249b5e25fSSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
23349b5e25fSSatish Balay       }
23449b5e25fSSatish Balay     }
23549b5e25fSSatish Balay   }
23649b5e25fSSatish Balay 
23749b5e25fSSatish Balay   if (cols) {
23849b5e25fSSatish Balay     *cols = 0;
23949b5e25fSSatish Balay     if (*ncols) {
24013f74950SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscInt),cols);CHKERRQ(ierr);
24149b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
24249b5e25fSSatish Balay         cols_i = *cols + i*bs;
24349b5e25fSSatish Balay         itmp  = bs*aj[ai[bn] + i];
24449b5e25fSSatish Balay         for (j=0; j<bs; j++) {cols_i[j] = itmp++;}
24549b5e25fSSatish Balay       }
24649b5e25fSSatish Balay     }
24749b5e25fSSatish Balay   }
24849b5e25fSSatish Balay 
24949b5e25fSSatish Balay   /*search column A(0:row-1,row) (=A(row,0:row-1)). Could be expensive! */
2505ddb2528SHong Zhang   /* this segment is currently removed, so only entries in the upper triangle are obtained */
2515ddb2528SHong Zhang #ifdef column_search
25249b5e25fSSatish Balay   v_i    = *v    + M*bs;
25349b5e25fSSatish Balay   cols_i = *cols + M*bs;
25449b5e25fSSatish Balay   for (i=0; i<bn; i++){ /* for each block row */
25549b5e25fSSatish Balay     M = ai[i+1] - ai[i];
25649b5e25fSSatish Balay     for (j=0; j<M; j++){
25749b5e25fSSatish Balay       itmp = aj[ai[i] + j];    /* block column value */
25849b5e25fSSatish Balay       if (itmp == bn){
25949b5e25fSSatish Balay         aa_i   = aa    + bs2*(ai[i] + j) + bs*bp;
26049b5e25fSSatish Balay         for (k=0; k<bs; k++) {
26149b5e25fSSatish Balay           *cols_i++ = i*bs+k;
26249b5e25fSSatish Balay           *v_i++    = aa_i[k];
26349b5e25fSSatish Balay         }
26449b5e25fSSatish Balay         *ncols += bs;
26549b5e25fSSatish Balay         break;
26649b5e25fSSatish Balay       }
26749b5e25fSSatish Balay     }
26849b5e25fSSatish Balay   }
2695ddb2528SHong Zhang #endif
27049b5e25fSSatish Balay   PetscFunctionReturn(0);
27149b5e25fSSatish Balay }
27249b5e25fSSatish Balay 
2734a2ae208SSatish Balay #undef __FUNCT__
2744a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ"
27513f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
27649b5e25fSSatish Balay {
277dfbe8321SBarry Smith   PetscErrorCode ierr;
27849b5e25fSSatish Balay 
27949b5e25fSSatish Balay   PetscFunctionBegin;
28049b5e25fSSatish Balay   if (idx) {if (*idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}}
28149b5e25fSSatish Balay   if (v)   {if (*v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}}
28249b5e25fSSatish Balay   PetscFunctionReturn(0);
28349b5e25fSSatish Balay }
28449b5e25fSSatish Balay 
2854a2ae208SSatish Balay #undef __FUNCT__
2864a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ"
287dfbe8321SBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,Mat *B)
28849b5e25fSSatish Balay {
289dfbe8321SBarry Smith   PetscErrorCode ierr;
29049b5e25fSSatish Balay   PetscFunctionBegin;
291999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
2928115998fSBarry Smith   PetscFunctionReturn(0);
29349b5e25fSSatish Balay }
29449b5e25fSSatish Balay 
2954a2ae208SSatish Balay #undef __FUNCT__
2964a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII"
2976849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer)
29849b5e25fSSatish Balay {
29949b5e25fSSatish Balay   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
300dfbe8321SBarry Smith   PetscErrorCode    ierr;
301521d7252SBarry Smith   PetscInt          i,j,bs = A->bs,k,l,bs2=a->bs2;
302fb9695e5SSatish Balay   char              *name;
303f3ef73ceSBarry Smith   PetscViewerFormat format;
30449b5e25fSSatish Balay 
30549b5e25fSSatish Balay   PetscFunctionBegin;
30680fe4e49SBarry Smith   ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
307b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
308456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
30977431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
310fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
31129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matlab format not supported");
312fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
313b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
31449b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
31549b5e25fSSatish Balay       for (j=0; j<bs; j++) {
31677431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
31749b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
31849b5e25fSSatish Balay           for (l=0; l<bs; l++) {
31949b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
32049b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
32177431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
32249b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
32349b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
32477431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
32549b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
32649b5e25fSSatish Balay             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
32777431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
32849b5e25fSSatish Balay             }
32949b5e25fSSatish Balay #else
33049b5e25fSSatish Balay             if (a->a[bs2*k + l*bs + j] != 0.0) {
33177431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
33249b5e25fSSatish Balay             }
33349b5e25fSSatish Balay #endif
33449b5e25fSSatish Balay           }
33549b5e25fSSatish Balay         }
336b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
33749b5e25fSSatish Balay       }
33849b5e25fSSatish Balay     }
339b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
34049b5e25fSSatish Balay   } else {
341b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
34249b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
34349b5e25fSSatish Balay       for (j=0; j<bs; j++) {
34477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
34549b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
34649b5e25fSSatish Balay           for (l=0; l<bs; l++) {
34749b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
34849b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
34977431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
35049b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
35149b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
35277431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
35349b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
35449b5e25fSSatish Balay             } else {
35577431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
35649b5e25fSSatish Balay             }
35749b5e25fSSatish Balay #else
35877431f27SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," %D %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
35949b5e25fSSatish Balay #endif
36049b5e25fSSatish Balay           }
36149b5e25fSSatish Balay         }
362b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
36349b5e25fSSatish Balay       }
36449b5e25fSSatish Balay     }
365b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
36649b5e25fSSatish Balay   }
367b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
36849b5e25fSSatish Balay   PetscFunctionReturn(0);
36949b5e25fSSatish Balay }
37049b5e25fSSatish Balay 
3714a2ae208SSatish Balay #undef __FUNCT__
3724a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom"
3736849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
37449b5e25fSSatish Balay {
37549b5e25fSSatish Balay   Mat            A = (Mat) Aa;
37649b5e25fSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)A->data;
3776849ba73SBarry Smith   PetscErrorCode ierr;
37813f74950SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->bs,bs2=a->bs2;
37913f74950SBarry Smith   PetscMPIInt    rank;
38049b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
38149b5e25fSSatish Balay   MatScalar      *aa;
38249b5e25fSSatish Balay   MPI_Comm       comm;
383b0a32e0cSBarry Smith   PetscViewer    viewer;
38449b5e25fSSatish Balay 
38549b5e25fSSatish Balay   PetscFunctionBegin;
38649b5e25fSSatish Balay   /*
38749b5e25fSSatish Balay     This is nasty. If this is called from an originally parallel matrix
38849b5e25fSSatish Balay     then all processes call this,but only the first has the matrix so the
38949b5e25fSSatish Balay     rest should return immediately.
39049b5e25fSSatish Balay   */
39149b5e25fSSatish Balay   ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr);
39249b5e25fSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
39349b5e25fSSatish Balay   if (rank) PetscFunctionReturn(0);
39449b5e25fSSatish Balay 
39549b5e25fSSatish Balay   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
39649b5e25fSSatish Balay 
397b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
398b0a32e0cSBarry Smith   PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");
39949b5e25fSSatish Balay 
40049b5e25fSSatish Balay   /* loop over matrix elements drawing boxes */
401b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
40249b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
40349b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
404c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
40549b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
40649b5e25fSSatish Balay       aa = a->a + j*bs2;
40749b5e25fSSatish Balay       for (k=0; k<bs; k++) {
40849b5e25fSSatish Balay         for (l=0; l<bs; l++) {
40949b5e25fSSatish Balay           if (PetscRealPart(*aa++) >=  0.) continue;
410b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
41149b5e25fSSatish Balay         }
41249b5e25fSSatish Balay       }
41349b5e25fSSatish Balay     }
41449b5e25fSSatish Balay   }
415b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
41649b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
41749b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
418c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
41949b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
42049b5e25fSSatish Balay       aa = a->a + j*bs2;
42149b5e25fSSatish Balay       for (k=0; k<bs; k++) {
42249b5e25fSSatish Balay         for (l=0; l<bs; l++) {
42349b5e25fSSatish Balay           if (PetscRealPart(*aa++) != 0.) continue;
424b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
42549b5e25fSSatish Balay         }
42649b5e25fSSatish Balay       }
42749b5e25fSSatish Balay     }
42849b5e25fSSatish Balay   }
42949b5e25fSSatish Balay 
430b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
43149b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
43249b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
433c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
43449b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
43549b5e25fSSatish Balay       aa = a->a + j*bs2;
43649b5e25fSSatish Balay       for (k=0; k<bs; k++) {
43749b5e25fSSatish Balay         for (l=0; l<bs; l++) {
43849b5e25fSSatish Balay           if (PetscRealPart(*aa++) <= 0.) continue;
439b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
44049b5e25fSSatish Balay         }
44149b5e25fSSatish Balay       }
44249b5e25fSSatish Balay     }
44349b5e25fSSatish Balay   }
44449b5e25fSSatish Balay   PetscFunctionReturn(0);
44549b5e25fSSatish Balay }
44649b5e25fSSatish Balay 
4474a2ae208SSatish Balay #undef __FUNCT__
4484a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw"
4496849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer)
45049b5e25fSSatish Balay {
451dfbe8321SBarry Smith   PetscErrorCode ierr;
45249b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,w,h;
453b0a32e0cSBarry Smith   PetscDraw      draw;
45449b5e25fSSatish Balay   PetscTruth     isnull;
45549b5e25fSSatish Balay 
45649b5e25fSSatish Balay   PetscFunctionBegin;
45749b5e25fSSatish Balay 
458b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
459b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
46049b5e25fSSatish Balay 
46149b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
462c464158bSHong Zhang   xr  = A->m; yr = A->m; h = yr/10.0; w = xr/10.0;
46349b5e25fSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
464b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
465b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
46649b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
46749b5e25fSSatish Balay   PetscFunctionReturn(0);
46849b5e25fSSatish Balay }
46949b5e25fSSatish Balay 
4704a2ae208SSatish Balay #undef __FUNCT__
4714a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ"
472dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer)
47349b5e25fSSatish Balay {
474dfbe8321SBarry Smith   PetscErrorCode ierr;
47532077d6dSBarry Smith   PetscTruth     iascii,isdraw;
47649b5e25fSSatish Balay 
47749b5e25fSSatish Balay   PetscFunctionBegin;
47832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
479fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
48032077d6dSBarry Smith   if (iascii){
48149b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
48249b5e25fSSatish Balay   } else if (isdraw) {
48349b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr);
48449b5e25fSSatish Balay   } else {
485a5e6ed63SBarry Smith     Mat B;
486ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
487a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
488a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
48949b5e25fSSatish Balay   }
49049b5e25fSSatish Balay   PetscFunctionReturn(0);
49149b5e25fSSatish Balay }
49249b5e25fSSatish Balay 
49349b5e25fSSatish Balay 
4944a2ae208SSatish Balay #undef __FUNCT__
4954a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ"
49613f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
49749b5e25fSSatish Balay {
498045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
49913f74950SBarry Smith   PetscInt     *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
50013f74950SBarry Smith   PetscInt     *ai = a->i,*ailen = a->ilen;
50113f74950SBarry Smith   PetscInt     brow,bcol,ridx,cidx,bs=A->bs,bs2=a->bs2;
50249b5e25fSSatish Balay   MatScalar    *ap,*aa = a->a,zero = 0.0;
50349b5e25fSSatish Balay 
50449b5e25fSSatish Balay   PetscFunctionBegin;
50549b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
50649b5e25fSSatish Balay     row  = im[k]; brow = row/bs;
50777431f27SBarry Smith     if (row < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row);
50877431f27SBarry Smith     if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->m-1);
50949b5e25fSSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
51049b5e25fSSatish Balay     nrow = ailen[brow];
51149b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
51277431f27SBarry Smith       if (in[l] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]);
51377431f27SBarry Smith       if (in[l] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->n-1);
51449b5e25fSSatish Balay       col  = in[l] ;
51549b5e25fSSatish Balay       bcol = col/bs;
51649b5e25fSSatish Balay       cidx = col%bs;
51749b5e25fSSatish Balay       ridx = row%bs;
51849b5e25fSSatish Balay       high = nrow;
51949b5e25fSSatish Balay       low  = 0; /* assume unsorted */
52049b5e25fSSatish Balay       while (high-low > 5) {
52149b5e25fSSatish Balay         t = (low+high)/2;
52249b5e25fSSatish Balay         if (rp[t] > bcol) high = t;
52349b5e25fSSatish Balay         else             low  = t;
52449b5e25fSSatish Balay       }
52549b5e25fSSatish Balay       for (i=low; i<high; i++) {
52649b5e25fSSatish Balay         if (rp[i] > bcol) break;
52749b5e25fSSatish Balay         if (rp[i] == bcol) {
52849b5e25fSSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
52949b5e25fSSatish Balay           goto finished;
53049b5e25fSSatish Balay         }
53149b5e25fSSatish Balay       }
53249b5e25fSSatish Balay       *v++ = zero;
53349b5e25fSSatish Balay        finished:;
53449b5e25fSSatish Balay     }
53549b5e25fSSatish Balay   }
53649b5e25fSSatish Balay   PetscFunctionReturn(0);
53749b5e25fSSatish Balay }
53849b5e25fSSatish Balay 
53949b5e25fSSatish Balay 
5404a2ae208SSatish Balay #undef __FUNCT__
5414a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ"
54213f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
54349b5e25fSSatish Balay {
5440880e062SHong Zhang   Mat_SeqSBAIJ    *a = (Mat_SeqSBAIJ*)A->data;
5456849ba73SBarry Smith   PetscErrorCode  ierr;
546e2ee6c50SBarry Smith   PetscInt        *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
54713f74950SBarry Smith   PetscInt        *imax=a->imax,*ai=a->i,*ailen=a->ilen;
54813f74950SBarry Smith   PetscInt        *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->bs,stepval;
5490880e062SHong Zhang   PetscTruth      roworiented=a->roworiented;
550f15d580aSBarry Smith   const MatScalar *value = v;
551f15d580aSBarry Smith   MatScalar       *ap,*aa = a->a,*bap;
5520880e062SHong Zhang 
55349b5e25fSSatish Balay   PetscFunctionBegin;
5540880e062SHong Zhang   if (roworiented) {
5550880e062SHong Zhang     stepval = (n-1)*bs;
5560880e062SHong Zhang   } else {
5570880e062SHong Zhang     stepval = (m-1)*bs;
5580880e062SHong Zhang   }
5590880e062SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
5600880e062SHong Zhang     row  = im[k];
5610880e062SHong Zhang     if (row < 0) continue;
5622515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
56377431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
5640880e062SHong Zhang #endif
5650880e062SHong Zhang     rp   = aj + ai[row];
5660880e062SHong Zhang     ap   = aa + bs2*ai[row];
5670880e062SHong Zhang     rmax = imax[row];
5680880e062SHong Zhang     nrow = ailen[row];
5690880e062SHong Zhang     low  = 0;
570818f2c47SBarry Smith     high = nrow;
5710880e062SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
5720880e062SHong Zhang       if (in[l] < 0) continue;
5730880e062SHong Zhang       col = in[l];
5742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
57577431f27SBarry Smith       if (col >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",col,a->nbs-1);
576b1823623SSatish Balay #endif
5770880e062SHong Zhang       if (col < row) continue; /* ignore lower triangular block */
5780880e062SHong Zhang       if (roworiented) {
5790880e062SHong Zhang         value = v + k*(stepval+bs)*bs + l*bs;
5800880e062SHong Zhang       } else {
5810880e062SHong Zhang         value = v + l*(stepval+bs)*bs + k*bs;
5820880e062SHong Zhang       }
583818f2c47SBarry Smith       if (col < lastcol) low = 0; else high = nrow;
584e2ee6c50SBarry Smith       lastcol = col;
5850880e062SHong Zhang       while (high-low > 7) {
5860880e062SHong Zhang         t = (low+high)/2;
5870880e062SHong Zhang         if (rp[t] > col) high = t;
5880880e062SHong Zhang         else             low  = t;
5890880e062SHong Zhang       }
5900880e062SHong Zhang       for (i=low; i<high; i++) {
5910880e062SHong Zhang         if (rp[i] > col) break;
5920880e062SHong Zhang         if (rp[i] == col) {
5930880e062SHong Zhang           bap  = ap +  bs2*i;
5940880e062SHong Zhang           if (roworiented) {
5950880e062SHong Zhang             if (is == ADD_VALUES) {
5960880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
5970880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
5980880e062SHong Zhang                   bap[jj] += *value++;
5990880e062SHong Zhang                 }
6000880e062SHong Zhang               }
6010880e062SHong Zhang             } else {
6020880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6030880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6040880e062SHong Zhang                   bap[jj] = *value++;
6050880e062SHong Zhang                 }
6060880e062SHong Zhang                }
6070880e062SHong Zhang             }
6080880e062SHong Zhang           } else {
6090880e062SHong Zhang             if (is == ADD_VALUES) {
6100880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6110880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6120880e062SHong Zhang                   *bap++ += *value++;
6130880e062SHong Zhang                 }
6140880e062SHong Zhang               }
6150880e062SHong Zhang             } else {
6160880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6170880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6180880e062SHong Zhang                   *bap++  = *value++;
6190880e062SHong Zhang                 }
6200880e062SHong Zhang               }
6210880e062SHong Zhang             }
6220880e062SHong Zhang           }
6230880e062SHong Zhang           goto noinsert2;
6240880e062SHong Zhang         }
6250880e062SHong Zhang       }
6260880e062SHong Zhang       if (nonew == 1) goto noinsert2;
62777431f27SBarry Smith       else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
6280880e062SHong Zhang       if (nrow >= rmax) {
6290880e062SHong Zhang         /* there is no extra room in row, therefore enlarge */
63013f74950SBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
6310880e062SHong Zhang         MatScalar *new_a;
6320880e062SHong Zhang 
63377431f27SBarry Smith         if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
6340880e062SHong Zhang 
6350880e062SHong Zhang         /* malloc new storage space */
636*a96a251dSBarry Smith         ierr = PetscMalloc3(bs2*new_nz,PetscScalar,&new_a,new_nz,PetscInt,&new_j,a->mbs+1,PetscInt,&new_i);CHKERRQ(ierr);
6370880e062SHong Zhang 
6380880e062SHong Zhang         /* copy over old data into new slots */
6390880e062SHong Zhang         for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];}
6400880e062SHong Zhang         for (ii=row+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;}
64113f74950SBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(PetscInt));CHKERRQ(ierr);
6420880e062SHong Zhang         len  = (new_nz - CHUNKSIZE - ai[row] - nrow);
64313f74950SBarry Smith         ierr = PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr);
6440880e062SHong Zhang         ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr);
6450880e062SHong Zhang         ierr = PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr);
6460880e062SHong Zhang         ierr = PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);
6470880e062SHong Zhang         /* free up old matrix storage */
6480880e062SHong Zhang        if (!a->singlemalloc) {
649*a96a251dSBarry Smith           ierr = PetscFree(a->a);CHKERRQ(ierr);
6500880e062SHong Zhang           ierr = PetscFree(a->i);CHKERRQ(ierr);
6510880e062SHong Zhang           ierr = PetscFree(a->j);CHKERRQ(ierr);
652*a96a251dSBarry Smith         } else {
653*a96a251dSBarry Smith           ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr);
6540880e062SHong Zhang         }
6550880e062SHong Zhang         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
6560880e062SHong Zhang         a->singlemalloc = PETSC_TRUE;
6570880e062SHong Zhang 
6580880e062SHong Zhang         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
6590880e062SHong Zhang         rmax = imax[row] = imax[row] + CHUNKSIZE;
66052e6d16bSBarry Smith         ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr);
6616c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE;
6620880e062SHong Zhang         a->reallocs++;
6636c6c5352SBarry Smith         a->nz++;
6640880e062SHong Zhang       }
6650880e062SHong Zhang       N = nrow++ - 1;
6660880e062SHong Zhang       /* shift up all the later entries in this row */
6670880e062SHong Zhang       for (ii=N; ii>=i; ii--) {
6680880e062SHong Zhang         rp[ii+1] = rp[ii];
6690880e062SHong Zhang         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
6700880e062SHong Zhang       }
6710880e062SHong Zhang       if (N >= i) {
6720880e062SHong Zhang         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
6730880e062SHong Zhang       }
6740880e062SHong Zhang       rp[i] = col;
6750880e062SHong Zhang       bap   = ap +  bs2*i;
6760880e062SHong Zhang       if (roworiented) {
6770880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6780880e062SHong Zhang           for (jj=ii; jj<bs2; jj+=bs) {
6790880e062SHong Zhang             bap[jj] = *value++;
6800880e062SHong Zhang           }
6810880e062SHong Zhang         }
6820880e062SHong Zhang       } else {
6830880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6840880e062SHong Zhang           for (jj=0; jj<bs; jj++) {
6850880e062SHong Zhang             *bap++  = *value++;
6860880e062SHong Zhang           }
6870880e062SHong Zhang         }
6880880e062SHong Zhang        }
6890880e062SHong Zhang     noinsert2:;
6900880e062SHong Zhang       low = i;
6910880e062SHong Zhang     }
6920880e062SHong Zhang     ailen[row] = nrow;
6930880e062SHong Zhang   }
6940880e062SHong Zhang    PetscFunctionReturn(0);
69549b5e25fSSatish Balay }
69649b5e25fSSatish Balay 
6974a2ae208SSatish Balay #undef __FUNCT__
6984a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ"
699dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode)
70049b5e25fSSatish Balay {
70149b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
7026849ba73SBarry Smith   PetscErrorCode ierr;
70313f74950SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
70413f74950SBarry Smith   PetscInt       m = A->m,*ip,N,*ailen = a->ilen;
70513f74950SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
70649b5e25fSSatish Balay   MatScalar      *aa = a->a,*ap;
70749b5e25fSSatish Balay 
70849b5e25fSSatish Balay   PetscFunctionBegin;
70949b5e25fSSatish Balay   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
71049b5e25fSSatish Balay 
71149b5e25fSSatish Balay   if (m) rmax = ailen[0];
71249b5e25fSSatish Balay   for (i=1; i<mbs; i++) {
71349b5e25fSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
71449b5e25fSSatish Balay     fshift += imax[i-1] - ailen[i-1];
71549b5e25fSSatish Balay      rmax   = PetscMax(rmax,ailen[i]);
71649b5e25fSSatish Balay      if (fshift) {
71749b5e25fSSatish Balay        ip = aj + ai[i]; ap = aa + bs2*ai[i];
71849b5e25fSSatish Balay        N = ailen[i];
71949b5e25fSSatish Balay        for (j=0; j<N; j++) {
72049b5e25fSSatish Balay          ip[j-fshift] = ip[j];
72149b5e25fSSatish Balay          ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
72249b5e25fSSatish Balay        }
72349b5e25fSSatish Balay      }
72449b5e25fSSatish Balay      ai[i] = ai[i-1] + ailen[i-1];
72549b5e25fSSatish Balay   }
72649b5e25fSSatish Balay   if (mbs) {
72749b5e25fSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
72849b5e25fSSatish Balay      ai[mbs] = ai[mbs-1] + ailen[mbs-1];
72949b5e25fSSatish Balay   }
73049b5e25fSSatish Balay   /* reset ilen and imax for each row */
73149b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
73249b5e25fSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
73349b5e25fSSatish Balay   }
7346c6c5352SBarry Smith   a->nz = ai[mbs];
73549b5e25fSSatish Balay 
736b424e231SHong Zhang   /* diagonals may have moved, reset it */
737b424e231SHong Zhang   if (a->diag) {
73813f74950SBarry Smith     ierr = PetscMemcpy(a->diag,ai,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
73949b5e25fSSatish Balay   }
74063ba0a88SBarry Smith   ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",
74163ba0a88SBarry Smith                        m,A->m,A->bs,fshift*bs2,a->nz*bs2));CHKERRQ(ierr);
74263ba0a88SBarry Smith   ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Number of mallocs during MatSetValues is %D\n",a->reallocs));CHKERRQ(ierr);
74363ba0a88SBarry Smith   ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Most nonzeros blocks in any row is %D\n",rmax));CHKERRQ(ierr);
74449b5e25fSSatish Balay   a->reallocs          = 0;
74549b5e25fSSatish Balay   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
74649b5e25fSSatish Balay   PetscFunctionReturn(0);
74749b5e25fSSatish Balay }
74849b5e25fSSatish Balay 
74949b5e25fSSatish Balay /*
75049b5e25fSSatish Balay    This function returns an array of flags which indicate the locations of contiguous
75149b5e25fSSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
75249b5e25fSSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
75349b5e25fSSatish Balay    Assume: sizes should be long enough to hold all the values.
75449b5e25fSSatish Balay */
7554a2ae208SSatish Balay #undef __FUNCT__
7564a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks"
75713f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
75849b5e25fSSatish Balay {
75913f74950SBarry Smith   PetscInt   i,j,k,row;
76049b5e25fSSatish Balay   PetscTruth flg;
76149b5e25fSSatish Balay 
76249b5e25fSSatish Balay   PetscFunctionBegin;
76349b5e25fSSatish Balay    for (i=0,j=0; i<n; j++) {
76449b5e25fSSatish Balay      row = idx[i];
76549b5e25fSSatish Balay      if (row%bs!=0) { /* Not the begining of a block */
76649b5e25fSSatish Balay        sizes[j] = 1;
76749b5e25fSSatish Balay        i++;
76849b5e25fSSatish Balay      } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */
76949b5e25fSSatish Balay        sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
77049b5e25fSSatish Balay        i++;
77149b5e25fSSatish Balay      } else { /* Begining of the block, so check if the complete block exists */
77249b5e25fSSatish Balay        flg = PETSC_TRUE;
77349b5e25fSSatish Balay        for (k=1; k<bs; k++) {
77449b5e25fSSatish Balay          if (row+k != idx[i+k]) { /* break in the block */
77549b5e25fSSatish Balay            flg = PETSC_FALSE;
77649b5e25fSSatish Balay            break;
77749b5e25fSSatish Balay          }
77849b5e25fSSatish Balay        }
779abc0a331SBarry Smith        if (flg) { /* No break in the bs */
78049b5e25fSSatish Balay          sizes[j] = bs;
78149b5e25fSSatish Balay          i+= bs;
78249b5e25fSSatish Balay        } else {
78349b5e25fSSatish Balay          sizes[j] = 1;
78449b5e25fSSatish Balay          i++;
78549b5e25fSSatish Balay        }
78649b5e25fSSatish Balay      }
78749b5e25fSSatish Balay    }
78849b5e25fSSatish Balay    *bs_max = j;
78949b5e25fSSatish Balay    PetscFunctionReturn(0);
79049b5e25fSSatish Balay }
79149b5e25fSSatish Balay 
79249b5e25fSSatish Balay 
79349b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
79449b5e25fSSatish Balay    Any a(i,j) with i>j input by user is ingored.
79549b5e25fSSatish Balay */
79649b5e25fSSatish Balay 
7974a2ae208SSatish Balay #undef __FUNCT__
7984a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ"
79913f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
80049b5e25fSSatish Balay {
80149b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
8026849ba73SBarry Smith   PetscErrorCode ierr;
803e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
80413f74950SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
80513f74950SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->bs,brow,bcol;
80613f74950SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
80749b5e25fSSatish Balay   MatScalar      *ap,value,*aa=a->a,*bap;
80849b5e25fSSatish Balay 
80949b5e25fSSatish Balay   PetscFunctionBegin;
81049b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
81149b5e25fSSatish Balay     row  = im[k];       /* row number */
81249b5e25fSSatish Balay     brow = row/bs;      /* block row number */
81349b5e25fSSatish Balay     if (row < 0) continue;
8142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
81577431f27SBarry Smith     if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->m-1);
81649b5e25fSSatish Balay #endif
81749b5e25fSSatish Balay     rp   = aj + ai[brow]; /*ptr to beginning of column value of the row block*/
81849b5e25fSSatish Balay     ap   = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/
81949b5e25fSSatish Balay     rmax = imax[brow];  /* maximum space allocated for this row */
82049b5e25fSSatish Balay     nrow = ailen[brow]; /* actual length of this row */
82149b5e25fSSatish Balay     low  = 0;
82249b5e25fSSatish Balay 
82349b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
82449b5e25fSSatish Balay       if (in[l] < 0) continue;
8252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
82677431f27SBarry Smith       if (in[l] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->m-1);
82749b5e25fSSatish Balay #endif
82849b5e25fSSatish Balay       col = in[l];
82949b5e25fSSatish Balay       bcol = col/bs;              /* block col number */
83049b5e25fSSatish Balay 
831941593c8SHong Zhang       if (brow > bcol) {
832941593c8SHong Zhang         if (a->ignore_ltriangular){
833941593c8SHong Zhang           continue; /* ignore lower triangular values */
834941593c8SHong Zhang         } else {
835941593c8SHong Zhang           SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
836941593c8SHong Zhang         }
837941593c8SHong Zhang       }
838f4989cb3SHong Zhang 
83949b5e25fSSatish Balay       ridx = row % bs; cidx = col % bs; /*row and col index inside the block */
8408549e402SHong Zhang       if ((brow==bcol && ridx<=cidx) || (brow<bcol)){
84149b5e25fSSatish Balay         /* element value a(k,l) */
84249b5e25fSSatish Balay         if (roworiented) {
84349b5e25fSSatish Balay           value = v[l + k*n];
84449b5e25fSSatish Balay         } else {
84549b5e25fSSatish Balay           value = v[k + l*m];
84649b5e25fSSatish Balay         }
84749b5e25fSSatish Balay 
84849b5e25fSSatish Balay         /* move pointer bap to a(k,l) quickly and add/insert value */
849e2ee6c50SBarry Smith         if (col < lastcol) low = 0; high = nrow;
850e2ee6c50SBarry Smith         lastcol = col;
85149b5e25fSSatish Balay         while (high-low > 7) {
85249b5e25fSSatish Balay           t = (low+high)/2;
85349b5e25fSSatish Balay           if (rp[t] > bcol) high = t;
85449b5e25fSSatish Balay           else              low  = t;
85549b5e25fSSatish Balay         }
85649b5e25fSSatish Balay         for (i=low; i<high; i++) {
85749b5e25fSSatish Balay           if (rp[i] > bcol) break;
85849b5e25fSSatish Balay           if (rp[i] == bcol) {
85949b5e25fSSatish Balay             bap  = ap +  bs2*i + bs*cidx + ridx;
86049b5e25fSSatish Balay             if (is == ADD_VALUES) *bap += value;
86149b5e25fSSatish Balay             else                  *bap  = value;
8628549e402SHong Zhang             /* for diag block, add/insert its symmetric element a(cidx,ridx) */
8638549e402SHong Zhang             if (brow == bcol && ridx < cidx){
8648549e402SHong Zhang               bap  = ap +  bs2*i + bs*ridx + cidx;
8658549e402SHong Zhang               if (is == ADD_VALUES) *bap += value;
8668549e402SHong Zhang               else                  *bap  = value;
8678549e402SHong Zhang             }
86849b5e25fSSatish Balay             goto noinsert1;
86949b5e25fSSatish Balay           }
87049b5e25fSSatish Balay         }
87149b5e25fSSatish Balay 
87249b5e25fSSatish Balay         if (nonew == 1) goto noinsert1;
87377431f27SBarry Smith         else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
87449b5e25fSSatish Balay         if (nrow >= rmax) {
87549b5e25fSSatish Balay           /* there is no extra room in row, therefore enlarge */
87613f74950SBarry Smith           PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
87749b5e25fSSatish Balay           MatScalar *new_a;
87849b5e25fSSatish Balay 
87977431f27SBarry Smith           if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
88049b5e25fSSatish Balay 
88149b5e25fSSatish Balay           /* Malloc new storage space */
882*a96a251dSBarry Smith           ierr = PetscMalloc3(bs2*new_nz,PetscScalar,&new_a,new_nz,PetscInt,&new_j,a->mbs+1,PetscInt,&new_i);CHKERRQ(ierr);
88349b5e25fSSatish Balay 
88449b5e25fSSatish Balay           /* copy over old data into new slots */
88549b5e25fSSatish Balay           for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];}
88649b5e25fSSatish Balay           for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;}
88713f74950SBarry Smith           ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr);
88849b5e25fSSatish Balay           len  = (new_nz - CHUNKSIZE - ai[brow] - nrow);
88913f74950SBarry Smith           ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr);
89049b5e25fSSatish Balay           ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr);
89149b5e25fSSatish Balay           ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr);
89249b5e25fSSatish Balay           ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);
89349b5e25fSSatish Balay           /* free up old matrix storage */
89449b5e25fSSatish Balay           if (!a->singlemalloc) {
895*a96a251dSBarry Smith             ierr = PetscFree(a->a);CHKERRQ(ierr);
89649b5e25fSSatish Balay             ierr = PetscFree(a->i);CHKERRQ(ierr);
89749b5e25fSSatish Balay             ierr = PetscFree(a->j);CHKERRQ(ierr);
898*a96a251dSBarry Smith           } else {
899*a96a251dSBarry Smith             ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr);
90049b5e25fSSatish Balay           }
90149b5e25fSSatish Balay           aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
90249b5e25fSSatish Balay           a->singlemalloc = PETSC_TRUE;
90349b5e25fSSatish Balay 
90449b5e25fSSatish Balay           rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
90549b5e25fSSatish Balay           rmax = imax[brow] = imax[brow] + CHUNKSIZE;
90652e6d16bSBarry Smith           ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr);
9076c6c5352SBarry Smith           a->maxnz += bs2*CHUNKSIZE;
90849b5e25fSSatish Balay           a->reallocs++;
9096c6c5352SBarry Smith           a->nz++;
91049b5e25fSSatish Balay         }
91149b5e25fSSatish Balay 
91249b5e25fSSatish Balay         N = nrow++ - 1;
91349b5e25fSSatish Balay         /* shift up all the later entries in this row */
91449b5e25fSSatish Balay         for (ii=N; ii>=i; ii--) {
91549b5e25fSSatish Balay           rp[ii+1] = rp[ii];
91649b5e25fSSatish Balay           ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
91749b5e25fSSatish Balay         }
91849b5e25fSSatish Balay         if (N>=i) {
91949b5e25fSSatish Balay           ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
92049b5e25fSSatish Balay         }
92149b5e25fSSatish Balay         rp[i]                      = bcol;
92249b5e25fSSatish Balay         ap[bs2*i + bs*cidx + ridx] = value;
92349b5e25fSSatish Balay       noinsert1:;
92449b5e25fSSatish Balay         low = i;
9258549e402SHong Zhang       }
92649b5e25fSSatish Balay     }   /* end of loop over added columns */
92749b5e25fSSatish Balay     ailen[brow] = nrow;
92849b5e25fSSatish Balay   }   /* end of loop over added rows */
92949b5e25fSSatish Balay   PetscFunctionReturn(0);
93049b5e25fSSatish Balay }
93149b5e25fSSatish Balay 
9326849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ(Mat,IS,MatFactorInfo*,Mat*);
9336849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactor_SeqSBAIJ(Mat,IS,MatFactorInfo*);
93413f74950SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_SeqSBAIJ(Mat,PetscInt,IS[],PetscInt);
93513f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrix_SeqSBAIJ(Mat,IS,IS,PetscInt,MatReuse,Mat*);
93613f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_SeqSBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat*[]);
9376849ba73SBarry Smith EXTERN PetscErrorCode MatScale_SeqSBAIJ(const PetscScalar*,Mat);
9386849ba73SBarry Smith EXTERN PetscErrorCode MatNorm_SeqSBAIJ(Mat,NormType,PetscReal *);
9396849ba73SBarry Smith EXTERN PetscErrorCode MatEqual_SeqSBAIJ(Mat,Mat,PetscTruth*);
9406849ba73SBarry Smith EXTERN PetscErrorCode MatGetDiagonal_SeqSBAIJ(Mat,Vec);
9416849ba73SBarry Smith EXTERN PetscErrorCode MatDiagonalScale_SeqSBAIJ(Mat,Vec,Vec);
9426849ba73SBarry Smith EXTERN PetscErrorCode MatGetInfo_SeqSBAIJ(Mat,MatInfoType,MatInfo *);
9436849ba73SBarry Smith EXTERN PetscErrorCode MatZeroEntries_SeqSBAIJ(Mat);
9446849ba73SBarry Smith EXTERN PetscErrorCode MatGetRowMax_SeqSBAIJ(Mat,Vec);
94549b5e25fSSatish Balay 
9466849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N(Mat,Vec,Vec);
9476849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1(Mat,Vec,Vec);
9486849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2(Mat,Vec,Vec);
9496849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3(Mat,Vec,Vec);
9506849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4(Mat,Vec,Vec);
9516849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5(Mat,Vec,Vec);
9526849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6(Mat,Vec,Vec);
9536849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7(Mat,Vec,Vec);
95449b5e25fSSatish Balay 
9556849ba73SBarry Smith EXTERN PetscErrorCode MatSolves_SeqSBAIJ_1(Mat,Vecs,Vecs);
956d59c15a7SBarry Smith 
9576849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1_NaturalOrdering(Mat,Vec,Vec);
9586849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2_NaturalOrdering(Mat,Vec,Vec);
9596849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3_NaturalOrdering(Mat,Vec,Vec);
9606849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4_NaturalOrdering(Mat,Vec,Vec);
9616849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5_NaturalOrdering(Mat,Vec,Vec);
9626849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6_NaturalOrdering(Mat,Vec,Vec);
9636849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7_NaturalOrdering(Mat,Vec,Vec);
9646849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N_NaturalOrdering(Mat,Vec,Vec);
96507f98182SSatish Balay 
966af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat,MatFactorInfo*,Mat*);
967af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat,MatFactorInfo*,Mat*);
968af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat,MatFactorInfo*,Mat*);
969af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat,MatFactorInfo*,Mat*);
970af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat,MatFactorInfo*,Mat*);
971af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat,MatFactorInfo*,Mat*);
972af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat,MatFactorInfo*,Mat*);
973af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat,MatFactorInfo*,Mat*);
97413f74950SBarry Smith EXTERN PetscErrorCode MatGetInertia_SeqSBAIJ(Mat,PetscInt*,PetscInt*,PetscInt*);
97549b5e25fSSatish Balay 
9766849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_1(Mat,Vec,Vec);
9776849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_2(Mat,Vec,Vec);
9786849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_3(Mat,Vec,Vec);
9796849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_4(Mat,Vec,Vec);
9806849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_5(Mat,Vec,Vec);
9816849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_6(Mat,Vec,Vec);
9826849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_7(Mat,Vec,Vec);
9836849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_N(Mat,Vec,Vec);
98449b5e25fSSatish Balay 
9856849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_1(Mat,Vec,Vec,Vec);
9866849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_2(Mat,Vec,Vec,Vec);
9876849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_3(Mat,Vec,Vec,Vec);
9886849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_4(Mat,Vec,Vec,Vec);
9896849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_5(Mat,Vec,Vec,Vec);
9906849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_6(Mat,Vec,Vec,Vec);
9916849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_7(Mat,Vec,Vec,Vec);
9926849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_N(Mat,Vec,Vec,Vec);
99349b5e25fSSatish Balay 
9944d101231SSatish Balay #ifdef HAVE_MatICCFactor
9956849ba73SBarry Smith /* modified from MatILUFactor_SeqSBAIJ, needs further work!  */
9964a2ae208SSatish Balay #undef __FUNCT__
9974d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ"
998dfbe8321SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,MatFactorInfo *info)
99949b5e25fSSatish Balay {
10004ccecd49SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inA->data;
100149b5e25fSSatish Balay   Mat            outA;
1002dfbe8321SBarry Smith   PetscErrorCode ierr;
100349b5e25fSSatish Balay   PetscTruth     row_identity,col_identity;
100449b5e25fSSatish Balay 
100549b5e25fSSatish Balay   PetscFunctionBegin;
100649b5e25fSSatish Balay   outA          = inA;
10071260e1f8SHong Zhang   inA->factor   = FACTOR_CHOLESKY;
100849b5e25fSSatish Balay 
100949b5e25fSSatish Balay   if (!a->diag) {
10101a3463dfSHong Zhang     ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr);
101149b5e25fSSatish Balay   }
101249b5e25fSSatish Balay   /*
101349b5e25fSSatish Balay     Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver
101449b5e25fSSatish Balay     for ILU(0) factorization with natural ordering
101549b5e25fSSatish Balay   */
101649b5e25fSSatish Balay   switch (a->bs) {
101749b5e25fSSatish Balay   case 1:
10180fe9e5beSBarry Smith     inA->ops->solve            = MatSolve_SeqSBAIJ_1_NaturalOrdering;
101907f98182SSatish Balay     inA->ops->solvetranspose   = MatSolve_SeqSBAIJ_1_NaturalOrdering;
1020d59c15a7SBarry Smith     inA->ops->solves           = MatSolves_SeqSBAIJ_1;
102163ba0a88SBarry Smith     ierr = PetscLoginfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering solvetrans BS=1\n"));CHKERRQ(ierr);
102249b5e25fSSatish Balay   case 2:
10231a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
10241a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_2_NaturalOrdering;
10251a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_2_NaturalOrdering;
102663ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=2\n"));CHKERRQ(ierr);
102749b5e25fSSatish Balay     break;
102849b5e25fSSatish Balay   case 3:
10291a3463dfSHong Zhang      inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
10301a3463dfSHong Zhang      inA->ops->solve           = MatSolve_SeqSBAIJ_3_NaturalOrdering;
10311a3463dfSHong Zhang      inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_3_NaturalOrdering;
103263ba0a88SBarry Smith      ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=3\n"));CHKERRQ(ierr);
103349b5e25fSSatish Balay      break;
103449b5e25fSSatish Balay   case 4:
10351a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
10361a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_4_NaturalOrdering;
10371a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_4_NaturalOrdering;
103863ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=4\n"));CHKERRQ(ierr);
103949b5e25fSSatish Balay     break;
104049b5e25fSSatish Balay   case 5:
10411a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
10421a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_5_NaturalOrdering;
10431a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_5_NaturalOrdering;
104463ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=5\n"));CHKERRQ(ierr);
104549b5e25fSSatish Balay     break;
104649b5e25fSSatish Balay   case 6:
10471a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
10481a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_6_NaturalOrdering;
10491a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_6_NaturalOrdering;
105063ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=6\n"));CHKERRQ(ierr);
105149b5e25fSSatish Balay     break;
105249b5e25fSSatish Balay   case 7:
10531a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
10541a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_7_NaturalOrdering;
10551a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_7_NaturalOrdering;
105663ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=7\n"));CHKERRQ(ierr);
105749b5e25fSSatish Balay     break;
105849b5e25fSSatish Balay   default:
105949b5e25fSSatish Balay     a->row        = row;
10601a3463dfSHong Zhang     a->icol       = col;
106149b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
106249b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
106349b5e25fSSatish Balay 
106449b5e25fSSatish Balay     /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
106549b5e25fSSatish Balay     ierr = ISInvertPermutation(col,PETSC_DECIDE, &(a->icol));CHKERRQ(ierr);
106652e6d16bSBarry Smith     ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
106749b5e25fSSatish Balay 
106849b5e25fSSatish Balay     if (!a->solve_work) {
106987828ca2SBarry Smith       ierr = PetscMalloc((A->m+a->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
107052e6d16bSBarry Smith       ierr = PetscLogObjectMemory(inA,(A->m+a->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
107149b5e25fSSatish Balay     }
107249b5e25fSSatish Balay   }
107349b5e25fSSatish Balay 
1074af281ebdSHong Zhang   ierr = MatCholeskyFactorNumeric(inA,info,&outA);CHKERRQ(ierr);
107549b5e25fSSatish Balay   PetscFunctionReturn(0);
107649b5e25fSSatish Balay }
1077950f1e5bSHong Zhang #endif
1078950f1e5bSHong Zhang 
10794a2ae208SSatish Balay #undef __FUNCT__
10804a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_SeqSBAIJ"
1081dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat A)
108249b5e25fSSatish Balay {
108349b5e25fSSatish Balay   static PetscTruth called = PETSC_FALSE;
108449b5e25fSSatish Balay   MPI_Comm          comm = A->comm;
1085dfbe8321SBarry Smith   PetscErrorCode    ierr;
108649b5e25fSSatish Balay 
108749b5e25fSSatish Balay   PetscFunctionBegin;
108849b5e25fSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
108949b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATSEQSBAIJ and MATMPISBAIJ matrix formats (the defaults):\n");CHKERRQ(ierr);
109049b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_block_size <block_size>\n");CHKERRQ(ierr);
1091941593c8SHong Zhang   ierr = (*PetscHelpPrintf)(comm,"  -mat_ignore_ltriangular: Ignore lower triangular values set by user\n");CHKERRQ(ierr);
109249b5e25fSSatish Balay   PetscFunctionReturn(0);
109349b5e25fSSatish Balay }
109449b5e25fSSatish Balay 
109549b5e25fSSatish Balay EXTERN_C_BEGIN
10964a2ae208SSatish Balay #undef __FUNCT__
10974a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ"
1098be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices)
109949b5e25fSSatish Balay {
1100045c9aa0SHong Zhang   Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data;
110113f74950SBarry Smith   PetscInt     i,nz,n;
110249b5e25fSSatish Balay 
110349b5e25fSSatish Balay   PetscFunctionBegin;
11046c6c5352SBarry Smith   nz = baij->maxnz;
1105c464158bSHong Zhang   n  = mat->n;
110649b5e25fSSatish Balay   for (i=0; i<nz; i++) {
110749b5e25fSSatish Balay     baij->j[i] = indices[i];
110849b5e25fSSatish Balay   }
11096c6c5352SBarry Smith    baij->nz = nz;
111049b5e25fSSatish Balay    for (i=0; i<n; i++) {
111149b5e25fSSatish Balay      baij->ilen[i] = baij->imax[i];
111249b5e25fSSatish Balay    }
111349b5e25fSSatish Balay    PetscFunctionReturn(0);
111449b5e25fSSatish Balay }
111549b5e25fSSatish Balay EXTERN_C_END
111649b5e25fSSatish Balay 
11174a2ae208SSatish Balay #undef __FUNCT__
11184a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices"
111949b5e25fSSatish Balay /*@
112019585528SSatish Balay   MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
112149b5e25fSSatish Balay   in the matrix.
112249b5e25fSSatish Balay 
112349b5e25fSSatish Balay   Input Parameters:
112419585528SSatish Balay   +  mat     - the SeqSBAIJ matrix
112549b5e25fSSatish Balay   -  indices - the column indices
112649b5e25fSSatish Balay 
112749b5e25fSSatish Balay   Level: advanced
112849b5e25fSSatish Balay 
112949b5e25fSSatish Balay   Notes:
113049b5e25fSSatish Balay   This can be called if you have precomputed the nonzero structure of the
113149b5e25fSSatish Balay   matrix and want to provide it to the matrix object to improve the performance
113249b5e25fSSatish Balay   of the MatSetValues() operation.
113349b5e25fSSatish Balay 
113449b5e25fSSatish Balay   You MUST have set the correct numbers of nonzeros per row in the call to
1135d1be2dadSMatthew Knepley   MatCreateSeqSBAIJ(), and the columns indices MUST be sorted.
113649b5e25fSSatish Balay 
1137ab9f2c04SSatish Balay   MUST be called before any calls to MatSetValues()
113849b5e25fSSatish Balay 
1139ab9f2c04SSatish Balay   .seealso: MatCreateSeqSBAIJ
114049b5e25fSSatish Balay @*/
1141be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices)
114249b5e25fSSatish Balay {
114313f74950SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
114449b5e25fSSatish Balay 
114549b5e25fSSatish Balay   PetscFunctionBegin;
11464482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
11474482741eSBarry Smith   PetscValidPointer(indices,2);
1148c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqSBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
114949b5e25fSSatish Balay   if (f) {
115049b5e25fSSatish Balay     ierr = (*f)(mat,indices);CHKERRQ(ierr);
115149b5e25fSSatish Balay   } else {
1152e005ede5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Wrong type of matrix to set column indices");
115349b5e25fSSatish Balay   }
115449b5e25fSSatish Balay   PetscFunctionReturn(0);
115549b5e25fSSatish Balay }
115649b5e25fSSatish Balay 
11574a2ae208SSatish Balay #undef __FUNCT__
11584a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqSBAIJ"
1159dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqSBAIJ(Mat A)
1160273d9f13SBarry Smith {
1161dfbe8321SBarry Smith   PetscErrorCode ierr;
1162273d9f13SBarry Smith 
1163273d9f13SBarry Smith   PetscFunctionBegin;
1164273d9f13SBarry Smith   ierr =  MatSeqSBAIJSetPreallocation(A,1,PETSC_DEFAULT,0);CHKERRQ(ierr);
1165273d9f13SBarry Smith   PetscFunctionReturn(0);
1166273d9f13SBarry Smith }
1167273d9f13SBarry Smith 
1168a6ece127SHong Zhang #undef __FUNCT__
1169a6ece127SHong Zhang #define __FUNCT__ "MatGetArray_SeqSBAIJ"
1170dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1171a6ece127SHong Zhang {
1172a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
1173a6ece127SHong Zhang   PetscFunctionBegin;
1174a6ece127SHong Zhang   *array = a->a;
1175a6ece127SHong Zhang   PetscFunctionReturn(0);
1176a6ece127SHong Zhang }
1177a6ece127SHong Zhang 
1178a6ece127SHong Zhang #undef __FUNCT__
1179a6ece127SHong Zhang #define __FUNCT__ "MatRestoreArray_SeqSBAIJ"
1180dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1181a6ece127SHong Zhang {
1182a6ece127SHong Zhang   PetscFunctionBegin;
1183a6ece127SHong Zhang   PetscFunctionReturn(0);
1184a6ece127SHong Zhang  }
1185a6ece127SHong Zhang 
118642ee4b1aSHong Zhang #include "petscblaslapack.h"
118742ee4b1aSHong Zhang #undef __FUNCT__
118842ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ"
1189dfbe8321SBarry Smith PetscErrorCode MatAXPY_SeqSBAIJ(const PetscScalar *a,Mat X,Mat Y,MatStructure str)
119042ee4b1aSHong Zhang {
119142ee4b1aSHong Zhang   Mat_SeqSBAIJ   *x=(Mat_SeqSBAIJ *)X->data, *y=(Mat_SeqSBAIJ *)Y->data;
1192dfbe8321SBarry Smith   PetscErrorCode ierr;
1193521d7252SBarry Smith   PetscInt       i,bs=Y->bs,bs2,j;
11944ce68768SBarry Smith   PetscBLASInt   bnz = (PetscBLASInt)x->nz,one = 1;
119542ee4b1aSHong Zhang 
119642ee4b1aSHong Zhang   PetscFunctionBegin;
119742ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
119871044d3cSBarry Smith     BLASaxpy_(&bnz,(PetscScalar*)a,x->a,&one,y->a,&one);
1199c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1200c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
1201c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
1202c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
1203c537a176SHong Zhang     }
1204c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
1205c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
1206c4319e64SHong Zhang       y->XtoY = X;
1207c537a176SHong Zhang     }
1208c4319e64SHong Zhang     bs2 = bs*bs;
12096c6c5352SBarry Smith     for (i=0; i<x->nz; i++) {
1210c4319e64SHong Zhang       j = 0;
1211c4319e64SHong Zhang       while (j < bs2){
12126550863bSHong Zhang         y->a[bs2*y->xtoy[i]+j] += (*a)*(x->a[bs2*i+j]);
1213c4319e64SHong Zhang         j++;
1214c537a176SHong Zhang       }
1215c4319e64SHong Zhang     }
121663ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatAXPY_SeqSBAIJ: ratio of nnz_s(X)/nnz_s(Y): %D/%D = %g\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz)));CHKERRQ(ierr);
121742ee4b1aSHong Zhang   } else {
121842ee4b1aSHong Zhang     ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr);
121942ee4b1aSHong Zhang   }
122042ee4b1aSHong Zhang   PetscFunctionReturn(0);
122142ee4b1aSHong Zhang }
122242ee4b1aSHong Zhang 
1223efcf0fc3SBarry Smith #undef __FUNCT__
1224efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ"
1225dfbe8321SBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscTruth *flg)
1226efcf0fc3SBarry Smith {
1227efcf0fc3SBarry Smith   PetscFunctionBegin;
1228efcf0fc3SBarry Smith   *flg = PETSC_TRUE;
1229efcf0fc3SBarry Smith   PetscFunctionReturn(0);
1230efcf0fc3SBarry Smith }
1231efcf0fc3SBarry Smith 
1232efcf0fc3SBarry Smith #undef __FUNCT__
1233efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ"
1234dfbe8321SBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscTruth *flg)
1235efcf0fc3SBarry Smith {
1236efcf0fc3SBarry Smith    PetscFunctionBegin;
1237efcf0fc3SBarry Smith    *flg = PETSC_TRUE;
1238efcf0fc3SBarry Smith    PetscFunctionReturn(0);
1239efcf0fc3SBarry Smith }
1240efcf0fc3SBarry Smith 
1241efcf0fc3SBarry Smith #undef __FUNCT__
1242efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ"
1243dfbe8321SBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscTruth *flg)
1244efcf0fc3SBarry Smith  {
1245efcf0fc3SBarry Smith    PetscFunctionBegin;
1246efcf0fc3SBarry Smith    *flg = PETSC_FALSE;
1247efcf0fc3SBarry Smith    PetscFunctionReturn(0);
1248efcf0fc3SBarry Smith  }
1249efcf0fc3SBarry Smith 
125049b5e25fSSatish Balay /* -------------------------------------------------------------------*/
125149b5e25fSSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
125249b5e25fSSatish Balay        MatGetRow_SeqSBAIJ,
125349b5e25fSSatish Balay        MatRestoreRow_SeqSBAIJ,
125449b5e25fSSatish Balay        MatMult_SeqSBAIJ_N,
125597304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N,
1256e005ede5SBarry Smith        MatMult_SeqSBAIJ_N,
1257e005ede5SBarry Smith        MatMultAdd_SeqSBAIJ_N,
125849b5e25fSSatish Balay        MatSolve_SeqSBAIJ_N,
125949b5e25fSSatish Balay        0,
126049b5e25fSSatish Balay        0,
126197304618SKris Buschelman /*10*/ 0,
126249b5e25fSSatish Balay        0,
12635f4ef2deSHong Zhang        MatCholeskyFactor_SeqSBAIJ,
1264d06b337dSHong Zhang        MatRelax_SeqSBAIJ,
126549b5e25fSSatish Balay        MatTranspose_SeqSBAIJ,
126697304618SKris Buschelman /*15*/ MatGetInfo_SeqSBAIJ,
126749b5e25fSSatish Balay        MatEqual_SeqSBAIJ,
126849b5e25fSSatish Balay        MatGetDiagonal_SeqSBAIJ,
126949b5e25fSSatish Balay        MatDiagonalScale_SeqSBAIJ,
127049b5e25fSSatish Balay        MatNorm_SeqSBAIJ,
127197304618SKris Buschelman /*20*/ 0,
127249b5e25fSSatish Balay        MatAssemblyEnd_SeqSBAIJ,
127349b5e25fSSatish Balay        0,
127449b5e25fSSatish Balay        MatSetOption_SeqSBAIJ,
127549b5e25fSSatish Balay        MatZeroEntries_SeqSBAIJ,
1276dcf5cc72SBarry Smith /*25*/ 0,
127749b5e25fSSatish Balay        0,
127849b5e25fSSatish Balay        0,
12795f4ef2deSHong Zhang        MatCholeskyFactorSymbolic_SeqSBAIJ,
12805f4ef2deSHong Zhang        MatCholeskyFactorNumeric_SeqSBAIJ_N,
128197304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqSBAIJ,
1282c464158bSHong Zhang        0,
12834d101231SSatish Balay        MatICCFactorSymbolic_SeqSBAIJ,
1284a6ece127SHong Zhang        MatGetArray_SeqSBAIJ,
1285a6ece127SHong Zhang        MatRestoreArray_SeqSBAIJ,
128697304618SKris Buschelman /*35*/ MatDuplicate_SeqSBAIJ,
128749b5e25fSSatish Balay        0,
128849b5e25fSSatish Balay        0,
128949b5e25fSSatish Balay        0,
1290950f1e5bSHong Zhang        0,
129197304618SKris Buschelman /*40*/ MatAXPY_SeqSBAIJ,
129249b5e25fSSatish Balay        MatGetSubMatrices_SeqSBAIJ,
129349b5e25fSSatish Balay        MatIncreaseOverlap_SeqSBAIJ,
129449b5e25fSSatish Balay        MatGetValues_SeqSBAIJ,
129549b5e25fSSatish Balay        0,
129697304618SKris Buschelman /*45*/ MatPrintHelp_SeqSBAIJ,
129749b5e25fSSatish Balay        MatScale_SeqSBAIJ,
129849b5e25fSSatish Balay        0,
129949b5e25fSSatish Balay        0,
130049b5e25fSSatish Balay        0,
1301521d7252SBarry Smith /*50*/ 0,
130249b5e25fSSatish Balay        MatGetRowIJ_SeqSBAIJ,
130349b5e25fSSatish Balay        MatRestoreRowIJ_SeqSBAIJ,
130449b5e25fSSatish Balay        0,
130549b5e25fSSatish Balay        0,
130697304618SKris Buschelman /*55*/ 0,
130749b5e25fSSatish Balay        0,
130849b5e25fSSatish Balay        0,
130949b5e25fSSatish Balay        0,
131049b5e25fSSatish Balay        MatSetValuesBlocked_SeqSBAIJ,
131197304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqSBAIJ,
131249b5e25fSSatish Balay        0,
131349b5e25fSSatish Balay        0,
13148a124369SBarry Smith        MatGetPetscMaps_Petsc,
1315d959ec07SHong Zhang        0,
131697304618SKris Buschelman /*65*/ 0,
1317d959ec07SHong Zhang        0,
1318d959ec07SHong Zhang        0,
1319d959ec07SHong Zhang        0,
1320d959ec07SHong Zhang        0,
132197304618SKris Buschelman /*70*/ MatGetRowMax_SeqSBAIJ,
13223e0d88b5SBarry Smith        0,
13233e0d88b5SBarry Smith        0,
13243e0d88b5SBarry Smith        0,
13253e0d88b5SBarry Smith        0,
132697304618SKris Buschelman /*75*/ 0,
13273e0d88b5SBarry Smith        0,
13283e0d88b5SBarry Smith        0,
13293e0d88b5SBarry Smith        0,
13303e0d88b5SBarry Smith        0,
133197304618SKris Buschelman /*80*/ 0,
13323e0d88b5SBarry Smith        0,
13333e0d88b5SBarry Smith        0,
13343e0d88b5SBarry Smith #if !defined(PETSC_USE_COMPLEX)
133597304618SKris Buschelman        MatGetInertia_SeqSBAIJ,
13363e0d88b5SBarry Smith #else
133797304618SKris Buschelman        0,
13383e0d88b5SBarry Smith #endif
1339865e5f61SKris Buschelman        MatLoad_SeqSBAIJ,
1340865e5f61SKris Buschelman /*85*/ MatIsSymmetric_SeqSBAIJ,
1341865e5f61SKris Buschelman        MatIsHermitian_SeqSBAIJ,
1342efcf0fc3SBarry Smith        MatIsStructurallySymmetric_SeqSBAIJ,
1343865e5f61SKris Buschelman        0,
1344865e5f61SKris Buschelman        0,
1345865e5f61SKris Buschelman /*90*/ 0,
1346865e5f61SKris Buschelman        0,
1347865e5f61SKris Buschelman        0,
1348865e5f61SKris Buschelman        0,
1349865e5f61SKris Buschelman        0,
1350865e5f61SKris Buschelman /*95*/ 0,
1351865e5f61SKris Buschelman        0,
1352865e5f61SKris Buschelman        0,
1353865e5f61SKris Buschelman        0};
1354be1d678aSKris Buschelman 
135549b5e25fSSatish Balay EXTERN_C_BEGIN
13564a2ae208SSatish Balay #undef __FUNCT__
13574a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ"
1358be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqSBAIJ(Mat mat)
135949b5e25fSSatish Balay {
13604afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ *)mat->data;
1361521d7252SBarry Smith   PetscInt       nz = aij->i[mat->m]*mat->bs*aij->bs2;
1362dfbe8321SBarry Smith   PetscErrorCode ierr;
136349b5e25fSSatish Balay 
136449b5e25fSSatish Balay   PetscFunctionBegin;
136549b5e25fSSatish Balay   if (aij->nonew != 1) {
1366e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
136749b5e25fSSatish Balay   }
136849b5e25fSSatish Balay 
136949b5e25fSSatish Balay   /* allocate space for values if not already there */
137049b5e25fSSatish Balay   if (!aij->saved_values) {
137187828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
137249b5e25fSSatish Balay   }
137349b5e25fSSatish Balay 
137449b5e25fSSatish Balay   /* copy values over */
137587828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
137649b5e25fSSatish Balay   PetscFunctionReturn(0);
137749b5e25fSSatish Balay }
137849b5e25fSSatish Balay EXTERN_C_END
137949b5e25fSSatish Balay 
138049b5e25fSSatish Balay EXTERN_C_BEGIN
13814a2ae208SSatish Balay #undef __FUNCT__
13824a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ"
1383be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqSBAIJ(Mat mat)
138449b5e25fSSatish Balay {
13854afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ *)mat->data;
13866849ba73SBarry Smith   PetscErrorCode ierr;
1387521d7252SBarry Smith   PetscInt       nz = aij->i[mat->m]*mat->bs*aij->bs2;
138849b5e25fSSatish Balay 
138949b5e25fSSatish Balay   PetscFunctionBegin;
139049b5e25fSSatish Balay   if (aij->nonew != 1) {
1391e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
139249b5e25fSSatish Balay   }
139349b5e25fSSatish Balay   if (!aij->saved_values) {
1394e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
139549b5e25fSSatish Balay   }
139649b5e25fSSatish Balay 
139749b5e25fSSatish Balay   /* copy values over */
139887828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
139949b5e25fSSatish Balay   PetscFunctionReturn(0);
140049b5e25fSSatish Balay }
140149b5e25fSSatish Balay EXTERN_C_END
140249b5e25fSSatish Balay 
14038549e402SHong Zhang EXTERN_C_BEGIN
14044a2ae208SSatish Balay #undef __FUNCT__
1405a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ"
1406be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
140749b5e25fSSatish Balay {
1408c464158bSHong Zhang   Mat_SeqSBAIJ   *b = (Mat_SeqSBAIJ*)B->data;
14096849ba73SBarry Smith   PetscErrorCode ierr;
141013f74950SBarry Smith   PetscInt       i,len,mbs,bs2;
141149b5e25fSSatish Balay   PetscTruth     flg;
141249b5e25fSSatish Balay 
141349b5e25fSSatish Balay   PetscFunctionBegin;
1414273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1415e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1416c464158bSHong Zhang   mbs  = B->m/bs;
141749b5e25fSSatish Balay   bs2  = bs*bs;
141849b5e25fSSatish Balay 
1419c464158bSHong Zhang   if (mbs*bs != B->m) {
142029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize");
142149b5e25fSSatish Balay   }
142249b5e25fSSatish Balay 
1423435da068SBarry Smith   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
142477431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
142549b5e25fSSatish Balay   if (nnz) {
142649b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
142777431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
142877431f27SBarry Smith       if (nnz[i] > mbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],mbs);
142949b5e25fSSatish Balay     }
143049b5e25fSSatish Balay   }
143149b5e25fSSatish Balay 
1432e82a3eeeSBarry Smith   ierr    = PetscOptionsHasName(B->prefix,"-mat_no_unroll",&flg);CHKERRQ(ierr);
143349b5e25fSSatish Balay   if (!flg) {
143449b5e25fSSatish Balay     switch (bs) {
143549b5e25fSSatish Balay     case 1:
14364ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1;
143749b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_1;
1438d59c15a7SBarry Smith       B->ops->solves          = MatSolves_SeqSBAIJ_1;
1439e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_1;
144049b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_1;
144149b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_1;
144249b5e25fSSatish Balay       break;
144349b5e25fSSatish Balay     case 2:
14444ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
144549b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_2;
1446e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_2;
144749b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_2;
144849b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_2;
144949b5e25fSSatish Balay       break;
145049b5e25fSSatish Balay     case 3:
14515f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
145249b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_3;
1453e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_3;
145449b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_3;
145549b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_3;
145649b5e25fSSatish Balay       break;
145749b5e25fSSatish Balay     case 4:
14585f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
145949b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_4;
1460e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_4;
146149b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_4;
146249b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_4;
146349b5e25fSSatish Balay       break;
146449b5e25fSSatish Balay     case 5:
14655f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
146649b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_5;
1467e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_5;
146849b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_5;
146949b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_5;
147049b5e25fSSatish Balay       break;
147149b5e25fSSatish Balay     case 6:
14725f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
147349b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_6;
1474e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_6;
147549b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_6;
147649b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_6;
147749b5e25fSSatish Balay       break;
147849b5e25fSSatish Balay     case 7:
1479de53e5efSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
148049b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_7;
1481e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_7;
1482de53e5efSHong Zhang       B->ops->mult            = MatMult_SeqSBAIJ_7;
148349b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_7;
148449b5e25fSSatish Balay       break;
148549b5e25fSSatish Balay     }
148649b5e25fSSatish Balay   }
148749b5e25fSSatish Balay 
148849b5e25fSSatish Balay   b->mbs = mbs;
14894afc71dfSHong Zhang   b->nbs = mbs;
149013f74950SBarry Smith   ierr   = PetscMalloc((mbs+1)*sizeof(PetscInt),&b->imax);CHKERRQ(ierr);
149149b5e25fSSatish Balay   if (!nnz) {
1492435da068SBarry Smith     if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
149349b5e25fSSatish Balay     else if (nz <= 0)        nz = 1;
149449b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
14958cef66ccSHong Zhang       b->imax[i] = nz;
149649b5e25fSSatish Balay     }
1497153ea458SHong Zhang     nz = nz*mbs; /* total nz */
149849b5e25fSSatish Balay   } else {
149949b5e25fSSatish Balay     nz = 0;
15008cef66ccSHong Zhang     for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
150149b5e25fSSatish Balay   }
15026c6c5352SBarry Smith   /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */
150349b5e25fSSatish Balay 
150449b5e25fSSatish Balay   /* allocate the matrix space */
1505*a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->m+1,PetscInt,&b->i);CHKERRQ(ierr);
15066c6c5352SBarry Smith   ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
150713f74950SBarry Smith   ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
150849b5e25fSSatish Balay   b->singlemalloc = PETSC_TRUE;
150949b5e25fSSatish Balay 
151049b5e25fSSatish Balay   /* pointer to beginning of each row */
151149b5e25fSSatish Balay   b->i[0] = 0;
151249b5e25fSSatish Balay   for (i=1; i<mbs+1; i++) {
151349b5e25fSSatish Balay     b->i[i] = b->i[i-1] + b->imax[i-1];
151449b5e25fSSatish Balay   }
151549b5e25fSSatish Balay 
151649b5e25fSSatish Balay   /* b->ilen will count nonzeros in each block row so far. */
151713f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&b->ilen);CHKERRQ(ierr);
151852e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,len+2*(mbs+1)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ));CHKERRQ(ierr);
151949b5e25fSSatish Balay   for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
152049b5e25fSSatish Balay 
1521521d7252SBarry Smith   B->bs               = bs;
152249b5e25fSSatish Balay   b->bs2              = bs2;
15236c6c5352SBarry Smith   b->nz             = 0;
15246c6c5352SBarry Smith   b->maxnz          = nz*bs2;
1525153ea458SHong Zhang 
152616cdd363SHong Zhang   b->inew             = 0;
152716cdd363SHong Zhang   b->jnew             = 0;
152816cdd363SHong Zhang   b->anew             = 0;
152916cdd363SHong Zhang   b->a2anew           = 0;
15301a3463dfSHong Zhang   b->permute          = PETSC_FALSE;
1531c464158bSHong Zhang   PetscFunctionReturn(0);
1532c464158bSHong Zhang }
1533a23d5eceSKris Buschelman EXTERN_C_END
1534153ea458SHong Zhang 
1535d769727bSBarry Smith EXTERN_C_BEGIN
1536be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqAIJ(Mat,const MatType,MatReuse,Mat*);
1537be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqBAIJ(Mat,const MatType,MatReuse,Mat*);
1538d769727bSBarry Smith EXTERN_C_END
1539d769727bSBarry Smith 
15400bad9183SKris Buschelman /*MC
1541fafad747SKris Buschelman   MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
15420bad9183SKris Buschelman   based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15430bad9183SKris Buschelman 
15440bad9183SKris Buschelman   Options Database Keys:
15450bad9183SKris Buschelman   . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions()
15460bad9183SKris Buschelman 
15470bad9183SKris Buschelman   Level: beginner
15480bad9183SKris Buschelman 
15490bad9183SKris Buschelman   .seealso: MatCreateSeqSBAIJ
15500bad9183SKris Buschelman M*/
15510bad9183SKris Buschelman 
1552a23d5eceSKris Buschelman EXTERN_C_BEGIN
1553a23d5eceSKris Buschelman #undef __FUNCT__
1554a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ"
1555be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqSBAIJ(Mat B)
1556a23d5eceSKris Buschelman {
1557a23d5eceSKris Buschelman   Mat_SeqSBAIJ   *b;
1558dfbe8321SBarry Smith   PetscErrorCode ierr;
155913f74950SBarry Smith   PetscMPIInt    size;
1560941593c8SHong Zhang   PetscTruth     flg;
1561a23d5eceSKris Buschelman 
1562a23d5eceSKris Buschelman   PetscFunctionBegin;
1563a23d5eceSKris Buschelman   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
1564a23d5eceSKris Buschelman   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
1565a23d5eceSKris Buschelman   B->m = B->M = PetscMax(B->m,B->M);
1566a23d5eceSKris Buschelman   B->n = B->N = PetscMax(B->n,B->N);
1567a23d5eceSKris Buschelman 
1568a23d5eceSKris Buschelman   ierr    = PetscNew(Mat_SeqSBAIJ,&b);CHKERRQ(ierr);
1569a23d5eceSKris Buschelman   B->data = (void*)b;
1570a23d5eceSKris Buschelman   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1571a23d5eceSKris Buschelman   B->ops->destroy     = MatDestroy_SeqSBAIJ;
1572a23d5eceSKris Buschelman   B->ops->view        = MatView_SeqSBAIJ;
1573a23d5eceSKris Buschelman   B->factor           = 0;
1574a23d5eceSKris Buschelman   B->mapping          = 0;
1575a23d5eceSKris Buschelman   b->row              = 0;
1576a23d5eceSKris Buschelman   b->icol             = 0;
1577a23d5eceSKris Buschelman   b->reallocs         = 0;
1578a23d5eceSKris Buschelman   b->saved_values     = 0;
1579a23d5eceSKris Buschelman 
1580a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1581a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
1582a23d5eceSKris Buschelman 
1583a23d5eceSKris Buschelman   b->sorted           = PETSC_FALSE;
1584a23d5eceSKris Buschelman   b->roworiented      = PETSC_TRUE;
1585a23d5eceSKris Buschelman   b->nonew            = 0;
1586a23d5eceSKris Buschelman   b->diag             = 0;
1587a23d5eceSKris Buschelman   b->solve_work       = 0;
1588a23d5eceSKris Buschelman   b->mult_work        = 0;
1589a23d5eceSKris Buschelman   B->spptr            = 0;
1590a23d5eceSKris Buschelman   b->keepzeroedrows   = PETSC_FALSE;
1591a23d5eceSKris Buschelman   b->xtoy             = 0;
1592a23d5eceSKris Buschelman   b->XtoY             = 0;
1593a23d5eceSKris Buschelman 
1594a23d5eceSKris Buschelman   b->inew             = 0;
1595a23d5eceSKris Buschelman   b->jnew             = 0;
1596a23d5eceSKris Buschelman   b->anew             = 0;
1597a23d5eceSKris Buschelman   b->a2anew           = 0;
1598a23d5eceSKris Buschelman   b->permute          = PETSC_FALSE;
1599a23d5eceSKris Buschelman 
1600941593c8SHong Zhang   b->ignore_ltriangular = PETSC_FALSE;
1601941593c8SHong Zhang   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_ignore_lower_triangular",&flg);CHKERRQ(ierr);
1602941593c8SHong Zhang   if (flg) b->ignore_ltriangular = PETSC_TRUE;
1603941593c8SHong Zhang 
1604a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1605a23d5eceSKris Buschelman                                      "MatStoreValues_SeqSBAIJ",
1606a23d5eceSKris Buschelman                                      MatStoreValues_SeqSBAIJ);CHKERRQ(ierr);
1607a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1608a23d5eceSKris Buschelman                                      "MatRetrieveValues_SeqSBAIJ",
1609a23d5eceSKris Buschelman                                      (void*)MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr);
1610a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",
1611a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetColumnIndices_SeqSBAIJ",
1612a23d5eceSKris Buschelman                                      MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr);
16134e5e7fe4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",
16144e5e7fe4SHong Zhang                                      "MatConvert_SeqSBAIJ_SeqAIJ",
16154e5e7fe4SHong Zhang                                       MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr);
1616a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",
1617a0e1a404SHong Zhang                                      "MatConvert_SeqSBAIJ_SeqBAIJ",
1618a0e1a404SHong Zhang                                       MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr);
1619a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",
1620a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetPreallocation_SeqSBAIJ",
1621a23d5eceSKris Buschelman                                      MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr);
162223ce1328SBarry Smith 
162323ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
162423ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
162523ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
162623ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1627a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1628a23d5eceSKris Buschelman }
1629a23d5eceSKris Buschelman EXTERN_C_END
1630a23d5eceSKris Buschelman 
1631a23d5eceSKris Buschelman #undef __FUNCT__
1632a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation"
1633a23d5eceSKris Buschelman /*@C
1634a23d5eceSKris Buschelman    MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
1635a23d5eceSKris Buschelman    compressed row) format.  For good matrix assembly performance the
1636a23d5eceSKris Buschelman    user should preallocate the matrix storage by setting the parameter nz
1637a23d5eceSKris Buschelman    (or the array nnz).  By setting these parameters accurately, performance
1638a23d5eceSKris Buschelman    during matrix assembly can be increased by more than a factor of 50.
1639a23d5eceSKris Buschelman 
1640a23d5eceSKris Buschelman    Collective on Mat
1641a23d5eceSKris Buschelman 
1642a23d5eceSKris Buschelman    Input Parameters:
1643a23d5eceSKris Buschelman +  A - the symmetric matrix
1644a23d5eceSKris Buschelman .  bs - size of block
1645a23d5eceSKris Buschelman .  nz - number of block nonzeros per block row (same for all rows)
1646a23d5eceSKris Buschelman -  nnz - array containing the number of block nonzeros in the upper triangular plus
1647a23d5eceSKris Buschelman          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1648a23d5eceSKris Buschelman 
1649a23d5eceSKris Buschelman    Options Database Keys:
1650a23d5eceSKris Buschelman .   -mat_no_unroll - uses code that does not unroll the loops in the
1651a23d5eceSKris Buschelman                      block calculations (much slower)
1652a23d5eceSKris Buschelman .    -mat_block_size - size of the blocks to use
1653a23d5eceSKris Buschelman 
1654a23d5eceSKris Buschelman    Level: intermediate
1655a23d5eceSKris Buschelman 
1656a23d5eceSKris Buschelman    Notes:
1657a23d5eceSKris Buschelman    Specify the preallocated storage with either nz or nnz (not both).
1658a23d5eceSKris Buschelman    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1659a23d5eceSKris Buschelman    allocation.  For additional details, see the users manual chapter on
1660a23d5eceSKris Buschelman    matrices.
1661a23d5eceSKris Buschelman 
166249a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
166349a6f317SBarry Smith 
166449a6f317SBarry Smith 
1665a23d5eceSKris Buschelman .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1666a23d5eceSKris Buschelman @*/
1667be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
166813f74950SBarry Smith {
166913f74950SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
1670a23d5eceSKris Buschelman 
1671a23d5eceSKris Buschelman   PetscFunctionBegin;
1672a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1673a23d5eceSKris Buschelman   if (f) {
1674a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
1675a23d5eceSKris Buschelman   }
1676a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1677a23d5eceSKris Buschelman }
167849b5e25fSSatish Balay 
16794a2ae208SSatish Balay #undef __FUNCT__
16804a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ"
1681c464158bSHong Zhang /*@C
1682c464158bSHong Zhang    MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block
1683c464158bSHong Zhang    compressed row) format.  For good matrix assembly performance the
1684c464158bSHong Zhang    user should preallocate the matrix storage by setting the parameter nz
1685c464158bSHong Zhang    (or the array nnz).  By setting these parameters accurately, performance
1686c464158bSHong Zhang    during matrix assembly can be increased by more than a factor of 50.
168749b5e25fSSatish Balay 
1688c464158bSHong Zhang    Collective on MPI_Comm
1689c464158bSHong Zhang 
1690c464158bSHong Zhang    Input Parameters:
1691c464158bSHong Zhang +  comm - MPI communicator, set to PETSC_COMM_SELF
1692c464158bSHong Zhang .  bs - size of block
1693c464158bSHong Zhang .  m - number of rows, or number of columns
1694c464158bSHong Zhang .  nz - number of block nonzeros per block row (same for all rows)
1695744e8345SSatish Balay -  nnz - array containing the number of block nonzeros in the upper triangular plus
1696744e8345SSatish Balay          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1697c464158bSHong Zhang 
1698c464158bSHong Zhang    Output Parameter:
1699c464158bSHong Zhang .  A - the symmetric matrix
1700c464158bSHong Zhang 
1701c464158bSHong Zhang    Options Database Keys:
1702c464158bSHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1703c464158bSHong Zhang                      block calculations (much slower)
1704c464158bSHong Zhang .    -mat_block_size - size of the blocks to use
1705c464158bSHong Zhang 
1706c464158bSHong Zhang    Level: intermediate
1707c464158bSHong Zhang 
1708c464158bSHong Zhang    Notes:
1709c464158bSHong Zhang 
1710c464158bSHong Zhang    Specify the preallocated storage with either nz or nnz (not both).
1711c464158bSHong Zhang    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1712c464158bSHong Zhang    allocation.  For additional details, see the users manual chapter on
1713c464158bSHong Zhang    matrices.
1714c464158bSHong Zhang 
171549a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
171649a6f317SBarry Smith 
1717c464158bSHong Zhang .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1718c464158bSHong Zhang @*/
1719be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
1720c464158bSHong Zhang {
1721dfbe8321SBarry Smith   PetscErrorCode ierr;
1722c464158bSHong Zhang 
1723c464158bSHong Zhang   PetscFunctionBegin;
1724c464158bSHong Zhang   ierr = MatCreate(comm,m,n,m,n,A);CHKERRQ(ierr);
1725c464158bSHong Zhang   ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1726273d9f13SBarry Smith   ierr = MatSeqSBAIJSetPreallocation(*A,bs,nz,nnz);CHKERRQ(ierr);
172749b5e25fSSatish Balay   PetscFunctionReturn(0);
172849b5e25fSSatish Balay }
172949b5e25fSSatish Balay 
17304a2ae208SSatish Balay #undef __FUNCT__
17314a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ"
1732dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
173349b5e25fSSatish Balay {
173449b5e25fSSatish Balay   Mat            C;
173549b5e25fSSatish Balay   Mat_SeqSBAIJ   *c,*a = (Mat_SeqSBAIJ*)A->data;
17366849ba73SBarry Smith   PetscErrorCode ierr;
173713f74950SBarry Smith   PetscInt       i,len,mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
173849b5e25fSSatish Balay 
173949b5e25fSSatish Balay   PetscFunctionBegin;
174029bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
174149b5e25fSSatish Balay 
174249b5e25fSSatish Balay   *B = 0;
1743692f9cbeSHong Zhang   ierr = MatCreate(A->comm,A->m,A->n,A->m,A->n,&C);CHKERRQ(ierr);
1744be5d1d56SKris Buschelman   ierr = MatSetType(C,A->type_name);CHKERRQ(ierr);
17451d5dac46SHong Zhang   ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1746692f9cbeSHong Zhang   c    = (Mat_SeqSBAIJ*)C->data;
1747692f9cbeSHong Zhang 
1748273d9f13SBarry Smith   C->preallocated   = PETSC_TRUE;
174949b5e25fSSatish Balay   C->factor         = A->factor;
175049b5e25fSSatish Balay   c->row            = 0;
175149b5e25fSSatish Balay   c->icol           = 0;
175249b5e25fSSatish Balay   c->saved_values   = 0;
175349b5e25fSSatish Balay   c->keepzeroedrows = a->keepzeroedrows;
175449b5e25fSSatish Balay   C->assembled      = PETSC_TRUE;
175549b5e25fSSatish Balay 
175682327fa8SHong Zhang   C->M    = A->M;
175782327fa8SHong Zhang   C->N    = A->N;
1758521d7252SBarry Smith   C->bs   = A->bs;
175949b5e25fSSatish Balay   c->bs2  = a->bs2;
176049b5e25fSSatish Balay   c->mbs  = a->mbs;
176149b5e25fSSatish Balay   c->nbs  = a->nbs;
176249b5e25fSSatish Balay 
176313f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->imax);CHKERRQ(ierr);
176413f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->ilen);CHKERRQ(ierr);
176549b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
176649b5e25fSSatish Balay     c->imax[i] = a->imax[i];
176749b5e25fSSatish Balay     c->ilen[i] = a->ilen[i];
176849b5e25fSSatish Balay   }
176949b5e25fSSatish Balay 
177049b5e25fSSatish Balay   /* allocate the matrix space */
1771*a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
177249b5e25fSSatish Balay   c->singlemalloc = PETSC_TRUE;
177313f74950SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
177449b5e25fSSatish Balay   if (mbs > 0) {
177513f74950SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
177649b5e25fSSatish Balay     if (cpvalues == MAT_COPY_VALUES) {
177749b5e25fSSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
177849b5e25fSSatish Balay     } else {
177949b5e25fSSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
178049b5e25fSSatish Balay     }
178149b5e25fSSatish Balay   }
178249b5e25fSSatish Balay 
178352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(C,len+2*(mbs+1)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ));CHKERRQ(ierr);
178449b5e25fSSatish Balay   c->sorted      = a->sorted;
178549b5e25fSSatish Balay   c->roworiented = a->roworiented;
178649b5e25fSSatish Balay   c->nonew       = a->nonew;
178749b5e25fSSatish Balay 
178849b5e25fSSatish Balay   if (a->diag) {
178913f74950SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
179052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
179149b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
179249b5e25fSSatish Balay       c->diag[i] = a->diag[i];
179349b5e25fSSatish Balay     }
179449b5e25fSSatish Balay   } else c->diag        = 0;
17956c6c5352SBarry Smith   c->nz               = a->nz;
17966c6c5352SBarry Smith   c->maxnz            = a->maxnz;
179749b5e25fSSatish Balay   c->solve_work         = 0;
179849b5e25fSSatish Balay   c->mult_work          = 0;
179949b5e25fSSatish Balay   *B = C;
1800b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(A->qlist,&C->qlist);CHKERRQ(ierr);
180149b5e25fSSatish Balay   PetscFunctionReturn(0);
180249b5e25fSSatish Balay }
180349b5e25fSSatish Balay 
18044a2ae208SSatish Balay #undef __FUNCT__
18054a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqSBAIJ"
1806dfbe8321SBarry Smith PetscErrorCode MatLoad_SeqSBAIJ(PetscViewer viewer,const MatType type,Mat *A)
180749b5e25fSSatish Balay {
180849b5e25fSSatish Balay   Mat_SeqSBAIJ   *a;
180949b5e25fSSatish Balay   Mat            B;
18106849ba73SBarry Smith   PetscErrorCode ierr;
181113f74950SBarry Smith   int            fd;
181213f74950SBarry Smith   PetscMPIInt    size;
181313f74950SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
181413f74950SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount;
181513f74950SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
181613f74950SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
181787828ca2SBarry Smith   PetscScalar    *aa;
181849b5e25fSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
181949b5e25fSSatish Balay 
182049b5e25fSSatish Balay   PetscFunctionBegin;
1821b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
182249b5e25fSSatish Balay   bs2  = bs*bs;
182349b5e25fSSatish Balay 
182449b5e25fSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
182529bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
1826b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
182749b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
1828552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
182949b5e25fSSatish Balay   M = header[1]; N = header[2]; nz = header[3];
183049b5e25fSSatish Balay 
183149b5e25fSSatish Balay   if (header[3] < 0) {
183229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ");
183349b5e25fSSatish Balay   }
183449b5e25fSSatish Balay 
183529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
183649b5e25fSSatish Balay 
183749b5e25fSSatish Balay   /*
183849b5e25fSSatish Balay      This code adds extra rows to make sure the number of rows is
183949b5e25fSSatish Balay     divisible by the blocksize
184049b5e25fSSatish Balay   */
184149b5e25fSSatish Balay   mbs        = M/bs;
184249b5e25fSSatish Balay   extra_rows = bs - M + bs*(mbs);
184349b5e25fSSatish Balay   if (extra_rows == bs) extra_rows = 0;
184449b5e25fSSatish Balay   else                  mbs++;
184549b5e25fSSatish Balay   if (extra_rows) {
184663ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_SeqSBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
184749b5e25fSSatish Balay   }
184849b5e25fSSatish Balay 
184949b5e25fSSatish Balay   /* read in row lengths */
185013f74950SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
185149b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
185249b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
185349b5e25fSSatish Balay 
185449b5e25fSSatish Balay   /* read in column indices */
185513f74950SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
185649b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
185749b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
185849b5e25fSSatish Balay 
185949b5e25fSSatish Balay   /* loop over row lengths determining block row lengths */
186013f74950SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&s_browlengths);CHKERRQ(ierr);
186113f74950SBarry Smith   ierr     = PetscMemzero(s_browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
186213f74950SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
186313f74950SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
186449b5e25fSSatish Balay   masked   = mask + mbs;
186549b5e25fSSatish Balay   rowcount = 0; nzcount = 0;
186649b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
186749b5e25fSSatish Balay     nmask = 0;
186849b5e25fSSatish Balay     for (j=0; j<bs; j++) {
186949b5e25fSSatish Balay       kmax = rowlengths[rowcount];
187049b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
18712d703238SHong Zhang         tmp = jj[nzcount++]/bs;   /* block col. index */
187203630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;}
187349b5e25fSSatish Balay       }
187449b5e25fSSatish Balay       rowcount++;
187549b5e25fSSatish Balay     }
1876574b2666SHong Zhang     s_browlengths[i] += nmask;
1877574b2666SHong Zhang 
187849b5e25fSSatish Balay     /* zero out the mask elements we set */
187949b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
188049b5e25fSSatish Balay   }
188149b5e25fSSatish Balay 
188249b5e25fSSatish Balay   /* create our matrix */
18839abb65ffSKris Buschelman   ierr = MatCreate(comm,M+extra_rows,N+extra_rows,M+extra_rows,N+extra_rows,&B);CHKERRQ(ierr);
18849abb65ffSKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
188578473fd7SKris Buschelman   ierr = MatSeqSBAIJSetPreallocation(B,bs,0,s_browlengths);CHKERRQ(ierr);
188649b5e25fSSatish Balay   a = (Mat_SeqSBAIJ*)B->data;
188749b5e25fSSatish Balay 
188849b5e25fSSatish Balay   /* set matrix "i" values */
188949b5e25fSSatish Balay   a->i[0] = 0;
189049b5e25fSSatish Balay   for (i=1; i<= mbs; i++) {
1891574b2666SHong Zhang     a->i[i]      = a->i[i-1] + s_browlengths[i-1];
1892574b2666SHong Zhang     a->ilen[i-1] = s_browlengths[i-1];
189349b5e25fSSatish Balay   }
18946c6c5352SBarry Smith   a->nz = a->i[mbs];
189549b5e25fSSatish Balay 
189649b5e25fSSatish Balay   /* read in nonzero values */
189787828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
189849b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
189949b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
190049b5e25fSSatish Balay 
190149b5e25fSSatish Balay   /* set "a" and "j" values into matrix */
190249b5e25fSSatish Balay   nzcount = 0; jcount = 0;
190349b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
190449b5e25fSSatish Balay     nzcountb = nzcount;
190549b5e25fSSatish Balay     nmask    = 0;
190649b5e25fSSatish Balay     for (j=0; j<bs; j++) {
190749b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
190849b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
19092d703238SHong Zhang         tmp = jj[nzcount++]/bs; /* block col. index */
191003630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;}
19112d703238SHong Zhang       }
19122d703238SHong Zhang     }
19132d703238SHong Zhang     /* sort the masked values */
19142d703238SHong Zhang     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
19152d703238SHong Zhang 
19162d703238SHong Zhang     /* set "j" values into matrix */
19172d703238SHong Zhang     maskcount = 1;
19182d703238SHong Zhang     for (j=0; j<nmask; j++) {
191949b5e25fSSatish Balay       a->j[jcount++]  = masked[j];
192049b5e25fSSatish Balay       mask[masked[j]] = maskcount++;
192149b5e25fSSatish Balay     }
1922574b2666SHong Zhang 
192349b5e25fSSatish Balay     /* set "a" values into matrix */
192449b5e25fSSatish Balay     ishift = bs2*a->i[i];
192549b5e25fSSatish Balay     for (j=0; j<bs; j++) {
192649b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
192749b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
1928574b2666SHong Zhang         tmp       = jj[nzcountb]/bs ; /* block col. index */
1929574b2666SHong Zhang         if (tmp >= i){
193049b5e25fSSatish Balay           block     = mask[tmp] - 1;
193149b5e25fSSatish Balay           point     = jj[nzcountb] - bs*tmp;
193249b5e25fSSatish Balay           idx       = ishift + bs2*block + j + bs*point;
1933574b2666SHong Zhang           a->a[idx] = aa[nzcountb];
1934574b2666SHong Zhang         }
1935574b2666SHong Zhang         nzcountb++;
193649b5e25fSSatish Balay       }
193749b5e25fSSatish Balay     }
193849b5e25fSSatish Balay     /* zero out the mask elements we set */
193949b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
194049b5e25fSSatish Balay   }
19416c6c5352SBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
194249b5e25fSSatish Balay 
194349b5e25fSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1944574b2666SHong Zhang   ierr = PetscFree(s_browlengths);CHKERRQ(ierr);
194549b5e25fSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
194649b5e25fSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
194749b5e25fSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
194849b5e25fSSatish Balay 
19499abb65ffSKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19509abb65ffSKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
195149b5e25fSSatish Balay   ierr = MatView_Private(B);CHKERRQ(ierr);
19529abb65ffSKris Buschelman   *A = B;
195349b5e25fSSatish Balay   PetscFunctionReturn(0);
195449b5e25fSSatish Balay }
1955574b2666SHong Zhang 
1956d06b337dSHong Zhang #undef __FUNCT__
1957d06b337dSHong Zhang #define __FUNCT__ "MatRelax_SeqSBAIJ"
195813f74950SBarry Smith PetscErrorCode MatRelax_SeqSBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1959d06b337dSHong Zhang {
1960d06b337dSHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
1961d06b337dSHong Zhang   MatScalar      *aa=a->a,*v,*v1;
1962d06b337dSHong Zhang   PetscScalar    *x,*b,*t,sum,d;
19636849ba73SBarry Smith   PetscErrorCode ierr;
1964521d7252SBarry Smith   PetscInt       m=a->mbs,bs=A->bs,*ai=a->i,*aj=a->j;
1965521d7252SBarry Smith   PetscInt       nz,nz1,*vj,*vj1,i;
1966d06b337dSHong Zhang 
1967d06b337dSHong Zhang   PetscFunctionBegin;
1968b965ef7fSBarry Smith   its = its*lits;
196977431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1970d06b337dSHong Zhang 
1971d06b337dSHong Zhang   if (bs > 1)
1972d06b337dSHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
1973d06b337dSHong Zhang 
19741ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1975d06b337dSHong Zhang   if (xx != bb) {
19761ebc52fbSHong Zhang     ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
1977d06b337dSHong Zhang   } else {
1978d06b337dSHong Zhang     b = x;
1979d06b337dSHong Zhang   }
1980d06b337dSHong Zhang 
1981d06b337dSHong Zhang   ierr = PetscMalloc(m*sizeof(PetscScalar),&t);CHKERRQ(ierr);
1982d06b337dSHong Zhang 
1983d06b337dSHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
19842798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1985d06b337dSHong Zhang       for (i=0; i<m; i++)
1986d06b337dSHong Zhang         t[i] = b[i];
1987d06b337dSHong Zhang 
1988d06b337dSHong Zhang       for (i=0; i<m; i++){
198944706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
1990d06b337dSHong Zhang         v  = aa + ai[i] + 1;
1991d06b337dSHong Zhang         vj = aj + ai[i] + 1;
1992d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
1993d06b337dSHong Zhang         x[i] = omega*t[i]/d;
1994d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++); /* update rhs */
1995efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
1996d06b337dSHong Zhang       }
1997d06b337dSHong Zhang     }
1998d06b337dSHong Zhang 
19992798e883SHong Zhang     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
2000d06b337dSHong Zhang       for (i=0; i<m; i++)
2001d06b337dSHong Zhang         t[i] = b[i];
2002d06b337dSHong Zhang 
2003d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2004d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2005d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2006d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2007d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2008efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2009d06b337dSHong Zhang       }
2010d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2011d06b337dSHong Zhang         d  = *(aa + ai[i]);
2012d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2013d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2014d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2015d06b337dSHong Zhang         sum = t[i];
2016d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
2017efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2018d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2019d06b337dSHong Zhang       }
2020d06b337dSHong Zhang     }
2021d06b337dSHong Zhang     its--;
2022d06b337dSHong Zhang   }
2023d06b337dSHong Zhang 
2024d06b337dSHong Zhang   while (its--) {
202544706875SHong Zhang     /*
202644706875SHong Zhang        forward sweep:
202744706875SHong Zhang        for i=0,...,m-1:
202844706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
202944706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
203044706875SHong Zhang          b      = b - x[i]*U^T(i,:);
2031d06b337dSHong Zhang 
203244706875SHong Zhang     */
20332798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
2034d06b337dSHong Zhang       for (i=0; i<m; i++)
2035d06b337dSHong Zhang         t[i] = b[i];
2036d06b337dSHong Zhang 
2037d06b337dSHong Zhang       for (i=0; i<m; i++){
203844706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
2039d06b337dSHong Zhang         v  = aa + ai[i] + 1; v1=v;
2040d06b337dSHong Zhang         vj = aj + ai[i] + 1; vj1=vj;
2041d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1; nz1=nz;
2042d06b337dSHong Zhang         sum = t[i];
2043d06b337dSHong Zhang         while (nz1--) sum -= (*v1++)*x[*vj1++];
2044d06b337dSHong Zhang         x[i] = (1-omega)*x[i] + omega*sum/d;
2045d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2046efee365bSSatish Balay         ierr = PetscLogFlops(4*nz-2);CHKERRQ(ierr);
2047d06b337dSHong Zhang       }
2048d06b337dSHong Zhang     }
2049d06b337dSHong Zhang 
20502798e883SHong Zhang   if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
205144706875SHong Zhang       /*
205244706875SHong Zhang        backward sweep:
205344706875SHong Zhang        b = b - x[i]*U^T(i,:), i=0,...,n-2
205444706875SHong Zhang        for i=m-1,...,0:
205544706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
205644706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
205744706875SHong Zhang       */
2058d06b337dSHong Zhang       for (i=0; i<m; i++)
2059d06b337dSHong Zhang         t[i] = b[i];
2060d06b337dSHong Zhang 
2061d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2062d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2063d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2064d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2065d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2066efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2067d06b337dSHong Zhang       }
2068d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2069d06b337dSHong Zhang         d  = *(aa + ai[i]);
2070d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2071d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2072d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2073d06b337dSHong Zhang         sum = t[i];
2074d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
2075efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2076d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2077d06b337dSHong Zhang       }
2078d06b337dSHong Zhang     }
2079d06b337dSHong Zhang   }
2080d06b337dSHong Zhang 
2081d06b337dSHong Zhang   ierr = PetscFree(t);CHKERRQ(ierr);
20821ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2083d06b337dSHong Zhang   if (bb != xx) {
20841ebc52fbSHong Zhang     ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2085d06b337dSHong Zhang   }
2086d06b337dSHong Zhang   PetscFunctionReturn(0);
2087d06b337dSHong Zhang }
2088d06b337dSHong Zhang 
2089d06b337dSHong Zhang 
2090d06b337dSHong Zhang 
2091d06b337dSHong Zhang 
209249b5e25fSSatish Balay 
209349b5e25fSSatish Balay 
2094