1be1d678aSKris Buschelman #define PETSCMAT_DLL 249b5e25fSSatish Balay 349b5e25fSSatish Balay /* 4a1373b80SHong Zhang Defines the basic matrix operations for the SBAIJ (compressed row) 549b5e25fSSatish Balay matrix storage format. 649b5e25fSSatish Balay */ 79e070d67SMatthew Knepley #include "src/mat/impls/baij/seq/baij.h" /*I "petscmat.h" I*/ 849b5e25fSSatish Balay #include "src/inline/spops.h" 9aec82049SSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h" 1049b5e25fSSatish Balay 1149b5e25fSSatish Balay #define CHUNKSIZE 10 1249b5e25fSSatish Balay 1349b5e25fSSatish Balay /* 1449b5e25fSSatish Balay Checks for missing diagonals 1549b5e25fSSatish Balay */ 164a2ae208SSatish Balay #undef __FUNCT__ 174a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ" 18dfbe8321SBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A) 1949b5e25fSSatish Balay { 20045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 216849ba73SBarry Smith PetscErrorCode ierr; 2213f74950SBarry Smith PetscInt *diag,*jj = a->j,i; 2349b5e25fSSatish Balay 2449b5e25fSSatish Balay PetscFunctionBegin; 25045c9aa0SHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr); 2649b5e25fSSatish Balay diag = a->diag; 2749b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 2877431f27SBarry Smith if (jj[diag[i]] != i) SETERRQ1(PETSC_ERR_ARG_CORRUPT,"Matrix is missing diagonal number %D",i); 2949b5e25fSSatish Balay } 3049b5e25fSSatish Balay PetscFunctionReturn(0); 3149b5e25fSSatish Balay } 3249b5e25fSSatish Balay 334a2ae208SSatish Balay #undef __FUNCT__ 344a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ" 35dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A) 3649b5e25fSSatish Balay { 37045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 386849ba73SBarry Smith PetscErrorCode ierr; 3913f74950SBarry Smith PetscInt i,mbs = a->mbs; 4049b5e25fSSatish Balay 4149b5e25fSSatish Balay PetscFunctionBegin; 4249b5e25fSSatish Balay if (a->diag) PetscFunctionReturn(0); 4349b5e25fSSatish Balay 4413f74950SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&a->diag);CHKERRQ(ierr); 4552e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 46b424e231SHong Zhang for (i=0; i<mbs; i++) a->diag[i] = a->i[i]; 4749b5e25fSSatish Balay PetscFunctionReturn(0); 4849b5e25fSSatish Balay } 4949b5e25fSSatish Balay 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ" 5213f74950SBarry Smith static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 5349b5e25fSSatish Balay { 54a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 5513f74950SBarry Smith PetscInt n = a->mbs,i; 5649b5e25fSSatish Balay 5749b5e25fSSatish Balay PetscFunctionBegin; 58d3e5a4abSHong Zhang *nn = n; 59a1373b80SHong Zhang if (!ia) PetscFunctionReturn(0); 60a1373b80SHong Zhang 61a6ece127SHong Zhang if (oshift == 1) { 62a6ece127SHong Zhang /* temporarily add 1 to i and j indices */ 6313f74950SBarry Smith PetscInt nz = a->i[n]; 646c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]++; 65a1373b80SHong Zhang for (i=0; i<n+1; i++) a->i[i]++; 66a1373b80SHong Zhang *ia = a->i; *ja = a->j; 67a1373b80SHong Zhang } else { 68a1373b80SHong Zhang *ia = a->i; *ja = a->j; 69a6ece127SHong Zhang } 7049b5e25fSSatish Balay PetscFunctionReturn(0); 7149b5e25fSSatish Balay } 7249b5e25fSSatish Balay 734a2ae208SSatish Balay #undef __FUNCT__ 744a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ" 7513f74950SBarry Smith static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 7649b5e25fSSatish Balay { 77b7aaefc3SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7813f74950SBarry Smith PetscInt i,n = a->mbs; 79a6ece127SHong Zhang 8049b5e25fSSatish Balay PetscFunctionBegin; 8149b5e25fSSatish Balay if (!ia) PetscFunctionReturn(0); 82a6ece127SHong Zhang 83a6ece127SHong Zhang if (oshift == 1) { 8413f74950SBarry Smith PetscInt nz = a->i[n]-1; 856c6c5352SBarry Smith for (i=0; i<nz; i++) a->j[i]--; 86a6ece127SHong Zhang for (i=0; i<n+1; i++) a->i[i]--; 87a6ece127SHong Zhang } 88a6ece127SHong Zhang PetscFunctionReturn(0); 8949b5e25fSSatish Balay } 9049b5e25fSSatish Balay 914a2ae208SSatish Balay #undef __FUNCT__ 924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ" 93dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A) 9449b5e25fSSatish Balay { 9549b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 96dfbe8321SBarry Smith PetscErrorCode ierr; 9749b5e25fSSatish Balay 9849b5e25fSSatish Balay PetscFunctionBegin; 9977431f27SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->m,a->nz); 10049b5e25fSSatish Balay if (!a->singlemalloc) { 101*ab93d7beSBarry Smith if (a->a) {ierr = PetscFree(a->a);CHKERRQ(ierr);} 102*ab93d7beSBarry Smith if (a->i) {ierr = PetscFree(a->i);CHKERRQ(ierr);} 103*ab93d7beSBarry Smith if (a->j) {ierr = PetscFree(a->j);CHKERRQ(ierr);} 104a96a251dSBarry Smith } else { 105a96a251dSBarry Smith ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr); 10649b5e25fSSatish Balay } 10749b5e25fSSatish Balay if (a->row) { 10849b5e25fSSatish Balay ierr = ISDestroy(a->row);CHKERRQ(ierr); 10949b5e25fSSatish Balay } 11049b5e25fSSatish Balay if (a->diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 111*ab93d7beSBarry Smith if (a->imax) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 11249b5e25fSSatish Balay if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 113d59c15a7SBarry Smith if (a->solve_work) {ierr = PetscFree(a->solve_work);CHKERRQ(ierr);} 114d59c15a7SBarry Smith if (a->solves_work) {ierr = PetscFree(a->solves_work);CHKERRQ(ierr);} 115d59c15a7SBarry Smith if (a->mult_work) {ierr = PetscFree(a->mult_work);CHKERRQ(ierr);} 11649b5e25fSSatish Balay if (a->saved_values) {ierr = PetscFree(a->saved_values);CHKERRQ(ierr);} 117c4319e64SHong Zhang if (a->xtoy) {ierr = PetscFree(a->xtoy);CHKERRQ(ierr);} 1181a3463dfSHong Zhang 1191a3463dfSHong Zhang if (a->inew){ 1201a3463dfSHong Zhang ierr = PetscFree(a->inew);CHKERRQ(ierr); 1211a3463dfSHong Zhang a->inew = 0; 1221a3463dfSHong Zhang } 12349b5e25fSSatish Balay ierr = PetscFree(a);CHKERRQ(ierr); 124901853e0SKris Buschelman 125901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr); 128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr); 129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C","",PETSC_NULL);CHKERRQ(ierr); 130901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 13149b5e25fSSatish Balay PetscFunctionReturn(0); 13249b5e25fSSatish Balay } 13349b5e25fSSatish Balay 1344a2ae208SSatish Balay #undef __FUNCT__ 1354a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ" 136dfbe8321SBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op) 13749b5e25fSSatish Balay { 138045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 13963ba0a88SBarry Smith PetscErrorCode ierr; 14049b5e25fSSatish Balay 14149b5e25fSSatish Balay PetscFunctionBegin; 1424d9d31abSKris Buschelman switch (op) { 1434d9d31abSKris Buschelman case MAT_ROW_ORIENTED: 1444d9d31abSKris Buschelman a->roworiented = PETSC_TRUE; 1454d9d31abSKris Buschelman break; 1464d9d31abSKris Buschelman case MAT_COLUMN_ORIENTED: 1474d9d31abSKris Buschelman a->roworiented = PETSC_FALSE; 1484d9d31abSKris Buschelman break; 1494d9d31abSKris Buschelman case MAT_COLUMNS_SORTED: 1504d9d31abSKris Buschelman a->sorted = PETSC_TRUE; 1514d9d31abSKris Buschelman break; 1524d9d31abSKris Buschelman case MAT_COLUMNS_UNSORTED: 1534d9d31abSKris Buschelman a->sorted = PETSC_FALSE; 1544d9d31abSKris Buschelman break; 1554d9d31abSKris Buschelman case MAT_KEEP_ZEROED_ROWS: 1564d9d31abSKris Buschelman a->keepzeroedrows = PETSC_TRUE; 1574d9d31abSKris Buschelman break; 1584d9d31abSKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 1594d9d31abSKris Buschelman a->nonew = 1; 1604d9d31abSKris Buschelman break; 1614d9d31abSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 1624d9d31abSKris Buschelman a->nonew = -1; 1634d9d31abSKris Buschelman break; 1644d9d31abSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 1654d9d31abSKris Buschelman a->nonew = -2; 1664d9d31abSKris Buschelman break; 1674d9d31abSKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 1684d9d31abSKris Buschelman a->nonew = 0; 1694d9d31abSKris Buschelman break; 1704d9d31abSKris Buschelman case MAT_ROWS_SORTED: 1714d9d31abSKris Buschelman case MAT_ROWS_UNSORTED: 1724d9d31abSKris Buschelman case MAT_YES_NEW_DIAGONALS: 1734d9d31abSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1744d9d31abSKris Buschelman case MAT_USE_HASH_TABLE: 17563ba0a88SBarry Smith ierr = PetscLogInfo((A,"MatSetOption_SeqSBAIJ:Option ignored\n"));CHKERRQ(ierr); 1764d9d31abSKris Buschelman break; 1774d9d31abSKris Buschelman case MAT_NO_NEW_DIAGONALS: 17829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1799a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 1809a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 1819a4540c5SBarry Smith case MAT_HERMITIAN: 1829a4540c5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric"); 18377e54ba9SKris Buschelman case MAT_SYMMETRIC: 18477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1859a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 1869a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1879a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 188941593c8SHong Zhang case MAT_IGNORE_LOWER_TRIANGULAR: 189941593c8SHong Zhang a->ignore_ltriangular = PETSC_TRUE; 190941593c8SHong Zhang break; 191941593c8SHong Zhang case MAT_ERROR_LOWER_TRIANGULAR: 192941593c8SHong Zhang a->ignore_ltriangular = PETSC_FALSE; 19377e54ba9SKris Buschelman break; 1944d9d31abSKris Buschelman default: 19529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 19649b5e25fSSatish Balay } 19749b5e25fSSatish Balay PetscFunctionReturn(0); 19849b5e25fSSatish Balay } 19949b5e25fSSatish Balay 2004a2ae208SSatish Balay #undef __FUNCT__ 2014a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ" 20213f74950SBarry Smith PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **v) 20349b5e25fSSatish Balay { 20449b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 2056849ba73SBarry Smith PetscErrorCode ierr; 20613f74950SBarry Smith PetscInt itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*cols_i,bs2; 20749b5e25fSSatish Balay MatScalar *aa,*aa_i; 20887828ca2SBarry Smith PetscScalar *v_i; 20949b5e25fSSatish Balay 21049b5e25fSSatish Balay PetscFunctionBegin; 211521d7252SBarry Smith bs = A->bs; 21249b5e25fSSatish Balay ai = a->i; 21349b5e25fSSatish Balay aj = a->j; 21449b5e25fSSatish Balay aa = a->a; 21549b5e25fSSatish Balay bs2 = a->bs2; 21649b5e25fSSatish Balay 21777431f27SBarry Smith if (row < 0 || row >= A->m) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "Row %D out of range", row); 21849b5e25fSSatish Balay 21949b5e25fSSatish Balay bn = row/bs; /* Block number */ 22049b5e25fSSatish Balay bp = row % bs; /* Block position */ 22149b5e25fSSatish Balay M = ai[bn+1] - ai[bn]; 22249b5e25fSSatish Balay *ncols = bs*M; 22349b5e25fSSatish Balay 22449b5e25fSSatish Balay if (v) { 22549b5e25fSSatish Balay *v = 0; 22649b5e25fSSatish Balay if (*ncols) { 22787828ca2SBarry Smith ierr = PetscMalloc((*ncols+row)*sizeof(PetscScalar),v);CHKERRQ(ierr); 22849b5e25fSSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 22949b5e25fSSatish Balay v_i = *v + i*bs; 23049b5e25fSSatish Balay aa_i = aa + bs2*(ai[bn] + i); 23149b5e25fSSatish Balay for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 23249b5e25fSSatish Balay } 23349b5e25fSSatish Balay } 23449b5e25fSSatish Balay } 23549b5e25fSSatish Balay 23649b5e25fSSatish Balay if (cols) { 23749b5e25fSSatish Balay *cols = 0; 23849b5e25fSSatish Balay if (*ncols) { 23913f74950SBarry Smith ierr = PetscMalloc((*ncols+row)*sizeof(PetscInt),cols);CHKERRQ(ierr); 24049b5e25fSSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 24149b5e25fSSatish Balay cols_i = *cols + i*bs; 24249b5e25fSSatish Balay itmp = bs*aj[ai[bn] + i]; 24349b5e25fSSatish Balay for (j=0; j<bs; j++) {cols_i[j] = itmp++;} 24449b5e25fSSatish Balay } 24549b5e25fSSatish Balay } 24649b5e25fSSatish Balay } 24749b5e25fSSatish Balay 24849b5e25fSSatish Balay /*search column A(0:row-1,row) (=A(row,0:row-1)). Could be expensive! */ 2495ddb2528SHong Zhang /* this segment is currently removed, so only entries in the upper triangle are obtained */ 2505ddb2528SHong Zhang #ifdef column_search 25149b5e25fSSatish Balay v_i = *v + M*bs; 25249b5e25fSSatish Balay cols_i = *cols + M*bs; 25349b5e25fSSatish Balay for (i=0; i<bn; i++){ /* for each block row */ 25449b5e25fSSatish Balay M = ai[i+1] - ai[i]; 25549b5e25fSSatish Balay for (j=0; j<M; j++){ 25649b5e25fSSatish Balay itmp = aj[ai[i] + j]; /* block column value */ 25749b5e25fSSatish Balay if (itmp == bn){ 25849b5e25fSSatish Balay aa_i = aa + bs2*(ai[i] + j) + bs*bp; 25949b5e25fSSatish Balay for (k=0; k<bs; k++) { 26049b5e25fSSatish Balay *cols_i++ = i*bs+k; 26149b5e25fSSatish Balay *v_i++ = aa_i[k]; 26249b5e25fSSatish Balay } 26349b5e25fSSatish Balay *ncols += bs; 26449b5e25fSSatish Balay break; 26549b5e25fSSatish Balay } 26649b5e25fSSatish Balay } 26749b5e25fSSatish Balay } 2685ddb2528SHong Zhang #endif 26949b5e25fSSatish Balay PetscFunctionReturn(0); 27049b5e25fSSatish Balay } 27149b5e25fSSatish Balay 2724a2ae208SSatish Balay #undef __FUNCT__ 2734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ" 27413f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 27549b5e25fSSatish Balay { 276dfbe8321SBarry Smith PetscErrorCode ierr; 27749b5e25fSSatish Balay 27849b5e25fSSatish Balay PetscFunctionBegin; 27949b5e25fSSatish Balay if (idx) {if (*idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}} 28049b5e25fSSatish Balay if (v) {if (*v) {ierr = PetscFree(*v);CHKERRQ(ierr);}} 28149b5e25fSSatish Balay PetscFunctionReturn(0); 28249b5e25fSSatish Balay } 28349b5e25fSSatish Balay 2844a2ae208SSatish Balay #undef __FUNCT__ 2854a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ" 286dfbe8321SBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,Mat *B) 28749b5e25fSSatish Balay { 288dfbe8321SBarry Smith PetscErrorCode ierr; 28949b5e25fSSatish Balay PetscFunctionBegin; 290999d9058SBarry Smith ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr); 2918115998fSBarry Smith PetscFunctionReturn(0); 29249b5e25fSSatish Balay } 29349b5e25fSSatish Balay 2944a2ae208SSatish Balay #undef __FUNCT__ 2954a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII" 2966849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer) 29749b5e25fSSatish Balay { 29849b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 299dfbe8321SBarry Smith PetscErrorCode ierr; 300521d7252SBarry Smith PetscInt i,j,bs = A->bs,k,l,bs2=a->bs2; 301fb9695e5SSatish Balay char *name; 302f3ef73ceSBarry Smith PetscViewerFormat format; 30349b5e25fSSatish Balay 30449b5e25fSSatish Balay PetscFunctionBegin; 30580fe4e49SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 306b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 307456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 30877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 309fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 31029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Matlab format not supported"); 311fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 312b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 31349b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 31449b5e25fSSatish Balay for (j=0; j<bs; j++) { 31577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 31649b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 31749b5e25fSSatish Balay for (l=0; l<bs; l++) { 31849b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 31949b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 32077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 32149b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 32249b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 32377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 32449b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 32549b5e25fSSatish Balay } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 32677431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 32749b5e25fSSatish Balay } 32849b5e25fSSatish Balay #else 32949b5e25fSSatish Balay if (a->a[bs2*k + l*bs + j] != 0.0) { 33077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 33149b5e25fSSatish Balay } 33249b5e25fSSatish Balay #endif 33349b5e25fSSatish Balay } 33449b5e25fSSatish Balay } 335b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 33649b5e25fSSatish Balay } 33749b5e25fSSatish Balay } 338b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 33949b5e25fSSatish Balay } else { 340b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 34149b5e25fSSatish Balay for (i=0; i<a->mbs; i++) { 34249b5e25fSSatish Balay for (j=0; j<bs; j++) { 34377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 34449b5e25fSSatish Balay for (k=a->i[i]; k<a->i[i+1]; k++) { 34549b5e25fSSatish Balay for (l=0; l<bs; l++) { 34649b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX) 34749b5e25fSSatish Balay if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 34877431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 34949b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 35049b5e25fSSatish Balay } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 35177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 35249b5e25fSSatish Balay PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 35349b5e25fSSatish Balay } else { 35477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 35549b5e25fSSatish Balay } 35649b5e25fSSatish Balay #else 35777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," %D %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 35849b5e25fSSatish Balay #endif 35949b5e25fSSatish Balay } 36049b5e25fSSatish Balay } 361b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 36249b5e25fSSatish Balay } 36349b5e25fSSatish Balay } 364b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 36549b5e25fSSatish Balay } 366b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 36749b5e25fSSatish Balay PetscFunctionReturn(0); 36849b5e25fSSatish Balay } 36949b5e25fSSatish Balay 3704a2ae208SSatish Balay #undef __FUNCT__ 3714a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom" 3726849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 37349b5e25fSSatish Balay { 37449b5e25fSSatish Balay Mat A = (Mat) Aa; 37549b5e25fSSatish Balay Mat_SeqSBAIJ *a=(Mat_SeqSBAIJ*)A->data; 3766849ba73SBarry Smith PetscErrorCode ierr; 37713f74950SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->bs,bs2=a->bs2; 37813f74950SBarry Smith PetscMPIInt rank; 37949b5e25fSSatish Balay PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 38049b5e25fSSatish Balay MatScalar *aa; 38149b5e25fSSatish Balay MPI_Comm comm; 382b0a32e0cSBarry Smith PetscViewer viewer; 38349b5e25fSSatish Balay 38449b5e25fSSatish Balay PetscFunctionBegin; 38549b5e25fSSatish Balay /* 38649b5e25fSSatish Balay This is nasty. If this is called from an originally parallel matrix 38749b5e25fSSatish Balay then all processes call this,but only the first has the matrix so the 38849b5e25fSSatish Balay rest should return immediately. 38949b5e25fSSatish Balay */ 39049b5e25fSSatish Balay ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr); 39149b5e25fSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 39249b5e25fSSatish Balay if (rank) PetscFunctionReturn(0); 39349b5e25fSSatish Balay 39449b5e25fSSatish Balay ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 39549b5e25fSSatish Balay 396b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 397b0a32e0cSBarry Smith PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric"); 39849b5e25fSSatish Balay 39949b5e25fSSatish Balay /* loop over matrix elements drawing boxes */ 400b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 40149b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 40249b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 403c464158bSHong Zhang y_l = A->m - row - 1.0; y_r = y_l + 1.0; 40449b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 40549b5e25fSSatish Balay aa = a->a + j*bs2; 40649b5e25fSSatish Balay for (k=0; k<bs; k++) { 40749b5e25fSSatish Balay for (l=0; l<bs; l++) { 40849b5e25fSSatish Balay if (PetscRealPart(*aa++) >= 0.) continue; 409b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 41049b5e25fSSatish Balay } 41149b5e25fSSatish Balay } 41249b5e25fSSatish Balay } 41349b5e25fSSatish Balay } 414b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 41549b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 41649b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 417c464158bSHong Zhang y_l = A->m - row - 1.0; y_r = y_l + 1.0; 41849b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 41949b5e25fSSatish Balay aa = a->a + j*bs2; 42049b5e25fSSatish Balay for (k=0; k<bs; k++) { 42149b5e25fSSatish Balay for (l=0; l<bs; l++) { 42249b5e25fSSatish Balay if (PetscRealPart(*aa++) != 0.) continue; 423b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 42449b5e25fSSatish Balay } 42549b5e25fSSatish Balay } 42649b5e25fSSatish Balay } 42749b5e25fSSatish Balay } 42849b5e25fSSatish Balay 429b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 43049b5e25fSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 43149b5e25fSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 432c464158bSHong Zhang y_l = A->m - row - 1.0; y_r = y_l + 1.0; 43349b5e25fSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 43449b5e25fSSatish Balay aa = a->a + j*bs2; 43549b5e25fSSatish Balay for (k=0; k<bs; k++) { 43649b5e25fSSatish Balay for (l=0; l<bs; l++) { 43749b5e25fSSatish Balay if (PetscRealPart(*aa++) <= 0.) continue; 438b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 43949b5e25fSSatish Balay } 44049b5e25fSSatish Balay } 44149b5e25fSSatish Balay } 44249b5e25fSSatish Balay } 44349b5e25fSSatish Balay PetscFunctionReturn(0); 44449b5e25fSSatish Balay } 44549b5e25fSSatish Balay 4464a2ae208SSatish Balay #undef __FUNCT__ 4474a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw" 4486849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer) 44949b5e25fSSatish Balay { 450dfbe8321SBarry Smith PetscErrorCode ierr; 45149b5e25fSSatish Balay PetscReal xl,yl,xr,yr,w,h; 452b0a32e0cSBarry Smith PetscDraw draw; 45349b5e25fSSatish Balay PetscTruth isnull; 45449b5e25fSSatish Balay 45549b5e25fSSatish Balay PetscFunctionBegin; 45649b5e25fSSatish Balay 457b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 458b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 45949b5e25fSSatish Balay 46049b5e25fSSatish Balay ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 461c464158bSHong Zhang xr = A->m; yr = A->m; h = yr/10.0; w = xr/10.0; 46249b5e25fSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 463b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 464b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 46549b5e25fSSatish Balay ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 46649b5e25fSSatish Balay PetscFunctionReturn(0); 46749b5e25fSSatish Balay } 46849b5e25fSSatish Balay 4694a2ae208SSatish Balay #undef __FUNCT__ 4704a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ" 471dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer) 47249b5e25fSSatish Balay { 473dfbe8321SBarry Smith PetscErrorCode ierr; 47432077d6dSBarry Smith PetscTruth iascii,isdraw; 47549b5e25fSSatish Balay 47649b5e25fSSatish Balay PetscFunctionBegin; 47732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 478fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 47932077d6dSBarry Smith if (iascii){ 48049b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 48149b5e25fSSatish Balay } else if (isdraw) { 48249b5e25fSSatish Balay ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr); 48349b5e25fSSatish Balay } else { 484a5e6ed63SBarry Smith Mat B; 485ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 486a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 487a5e6ed63SBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 48849b5e25fSSatish Balay } 48949b5e25fSSatish Balay PetscFunctionReturn(0); 49049b5e25fSSatish Balay } 49149b5e25fSSatish Balay 49249b5e25fSSatish Balay 4934a2ae208SSatish Balay #undef __FUNCT__ 4944a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ" 49513f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 49649b5e25fSSatish Balay { 497045c9aa0SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 49813f74950SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 49913f74950SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 50013f74950SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->bs,bs2=a->bs2; 50149b5e25fSSatish Balay MatScalar *ap,*aa = a->a,zero = 0.0; 50249b5e25fSSatish Balay 50349b5e25fSSatish Balay PetscFunctionBegin; 50449b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 50549b5e25fSSatish Balay row = im[k]; brow = row/bs; 50677431f27SBarry Smith if (row < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row); 50777431f27SBarry Smith if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->m-1); 50849b5e25fSSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 50949b5e25fSSatish Balay nrow = ailen[brow]; 51049b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 51177431f27SBarry Smith if (in[l] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]); 51277431f27SBarry Smith if (in[l] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->n-1); 51349b5e25fSSatish Balay col = in[l] ; 51449b5e25fSSatish Balay bcol = col/bs; 51549b5e25fSSatish Balay cidx = col%bs; 51649b5e25fSSatish Balay ridx = row%bs; 51749b5e25fSSatish Balay high = nrow; 51849b5e25fSSatish Balay low = 0; /* assume unsorted */ 51949b5e25fSSatish Balay while (high-low > 5) { 52049b5e25fSSatish Balay t = (low+high)/2; 52149b5e25fSSatish Balay if (rp[t] > bcol) high = t; 52249b5e25fSSatish Balay else low = t; 52349b5e25fSSatish Balay } 52449b5e25fSSatish Balay for (i=low; i<high; i++) { 52549b5e25fSSatish Balay if (rp[i] > bcol) break; 52649b5e25fSSatish Balay if (rp[i] == bcol) { 52749b5e25fSSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 52849b5e25fSSatish Balay goto finished; 52949b5e25fSSatish Balay } 53049b5e25fSSatish Balay } 53149b5e25fSSatish Balay *v++ = zero; 53249b5e25fSSatish Balay finished:; 53349b5e25fSSatish Balay } 53449b5e25fSSatish Balay } 53549b5e25fSSatish Balay PetscFunctionReturn(0); 53649b5e25fSSatish Balay } 53749b5e25fSSatish Balay 53849b5e25fSSatish Balay 5394a2ae208SSatish Balay #undef __FUNCT__ 5404a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ" 54113f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 54249b5e25fSSatish Balay { 5430880e062SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 5446849ba73SBarry Smith PetscErrorCode ierr; 545e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 54613f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 54713f74950SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->bs,stepval; 5480880e062SHong Zhang PetscTruth roworiented=a->roworiented; 549f15d580aSBarry Smith const MatScalar *value = v; 550f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 5510880e062SHong Zhang 55249b5e25fSSatish Balay PetscFunctionBegin; 5530880e062SHong Zhang if (roworiented) { 5540880e062SHong Zhang stepval = (n-1)*bs; 5550880e062SHong Zhang } else { 5560880e062SHong Zhang stepval = (m-1)*bs; 5570880e062SHong Zhang } 5580880e062SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 5590880e062SHong Zhang row = im[k]; 5600880e062SHong Zhang if (row < 0) continue; 5612515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 56277431f27SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 5630880e062SHong Zhang #endif 5640880e062SHong Zhang rp = aj + ai[row]; 5650880e062SHong Zhang ap = aa + bs2*ai[row]; 5660880e062SHong Zhang rmax = imax[row]; 5670880e062SHong Zhang nrow = ailen[row]; 5680880e062SHong Zhang low = 0; 569818f2c47SBarry Smith high = nrow; 5700880e062SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 5710880e062SHong Zhang if (in[l] < 0) continue; 5720880e062SHong Zhang col = in[l]; 5732515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 57477431f27SBarry Smith if (col >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",col,a->nbs-1); 575b1823623SSatish Balay #endif 5760880e062SHong Zhang if (col < row) continue; /* ignore lower triangular block */ 5770880e062SHong Zhang if (roworiented) { 5780880e062SHong Zhang value = v + k*(stepval+bs)*bs + l*bs; 5790880e062SHong Zhang } else { 5800880e062SHong Zhang value = v + l*(stepval+bs)*bs + k*bs; 5810880e062SHong Zhang } 582818f2c47SBarry Smith if (col < lastcol) low = 0; else high = nrow; 583e2ee6c50SBarry Smith lastcol = col; 5840880e062SHong Zhang while (high-low > 7) { 5850880e062SHong Zhang t = (low+high)/2; 5860880e062SHong Zhang if (rp[t] > col) high = t; 5870880e062SHong Zhang else low = t; 5880880e062SHong Zhang } 5890880e062SHong Zhang for (i=low; i<high; i++) { 5900880e062SHong Zhang if (rp[i] > col) break; 5910880e062SHong Zhang if (rp[i] == col) { 5920880e062SHong Zhang bap = ap + bs2*i; 5930880e062SHong Zhang if (roworiented) { 5940880e062SHong Zhang if (is == ADD_VALUES) { 5950880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 5960880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 5970880e062SHong Zhang bap[jj] += *value++; 5980880e062SHong Zhang } 5990880e062SHong Zhang } 6000880e062SHong Zhang } else { 6010880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6020880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6030880e062SHong Zhang bap[jj] = *value++; 6040880e062SHong Zhang } 6050880e062SHong Zhang } 6060880e062SHong Zhang } 6070880e062SHong Zhang } else { 6080880e062SHong Zhang if (is == ADD_VALUES) { 6090880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6100880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6110880e062SHong Zhang *bap++ += *value++; 6120880e062SHong Zhang } 6130880e062SHong Zhang } 6140880e062SHong Zhang } else { 6150880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6160880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6170880e062SHong Zhang *bap++ = *value++; 6180880e062SHong Zhang } 6190880e062SHong Zhang } 6200880e062SHong Zhang } 6210880e062SHong Zhang } 6220880e062SHong Zhang goto noinsert2; 6230880e062SHong Zhang } 6240880e062SHong Zhang } 6250880e062SHong Zhang if (nonew == 1) goto noinsert2; 62677431f27SBarry Smith else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 6270880e062SHong Zhang if (nrow >= rmax) { 6280880e062SHong Zhang /* there is no extra room in row, therefore enlarge */ 62913f74950SBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 6300880e062SHong Zhang MatScalar *new_a; 6310880e062SHong Zhang 63277431f27SBarry Smith if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 6330880e062SHong Zhang 6340880e062SHong Zhang /* malloc new storage space */ 635a96a251dSBarry Smith ierr = PetscMalloc3(bs2*new_nz,PetscScalar,&new_a,new_nz,PetscInt,&new_j,a->mbs+1,PetscInt,&new_i);CHKERRQ(ierr); 6360880e062SHong Zhang 6370880e062SHong Zhang /* copy over old data into new slots */ 6380880e062SHong Zhang for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];} 6390880e062SHong Zhang for (ii=row+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} 64013f74950SBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); 6410880e062SHong Zhang len = (new_nz - CHUNKSIZE - ai[row] - nrow); 64213f74950SBarry Smith ierr = PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); 6430880e062SHong Zhang ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); 6440880e062SHong Zhang ierr = PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); 6450880e062SHong Zhang ierr = PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); 6460880e062SHong Zhang /* free up old matrix storage */ 6470880e062SHong Zhang if (!a->singlemalloc) { 648a96a251dSBarry Smith ierr = PetscFree(a->a);CHKERRQ(ierr); 6490880e062SHong Zhang ierr = PetscFree(a->i);CHKERRQ(ierr); 6500880e062SHong Zhang ierr = PetscFree(a->j);CHKERRQ(ierr); 651a96a251dSBarry Smith } else { 652a96a251dSBarry Smith ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr); 6530880e062SHong Zhang } 6540880e062SHong Zhang aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 6550880e062SHong Zhang a->singlemalloc = PETSC_TRUE; 6560880e062SHong Zhang 6570880e062SHong Zhang rp = aj + ai[row]; ap = aa + bs2*ai[row]; 6580880e062SHong Zhang rmax = imax[row] = imax[row] + CHUNKSIZE; 65952e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); 6606c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; 6610880e062SHong Zhang a->reallocs++; 6626c6c5352SBarry Smith a->nz++; 6630880e062SHong Zhang } 6640880e062SHong Zhang N = nrow++ - 1; 6650880e062SHong Zhang /* shift up all the later entries in this row */ 6660880e062SHong Zhang for (ii=N; ii>=i; ii--) { 6670880e062SHong Zhang rp[ii+1] = rp[ii]; 6680880e062SHong Zhang ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 6690880e062SHong Zhang } 6700880e062SHong Zhang if (N >= i) { 6710880e062SHong Zhang ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 6720880e062SHong Zhang } 6730880e062SHong Zhang rp[i] = col; 6740880e062SHong Zhang bap = ap + bs2*i; 6750880e062SHong Zhang if (roworiented) { 6760880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6770880e062SHong Zhang for (jj=ii; jj<bs2; jj+=bs) { 6780880e062SHong Zhang bap[jj] = *value++; 6790880e062SHong Zhang } 6800880e062SHong Zhang } 6810880e062SHong Zhang } else { 6820880e062SHong Zhang for (ii=0; ii<bs; ii++,value+=stepval) { 6830880e062SHong Zhang for (jj=0; jj<bs; jj++) { 6840880e062SHong Zhang *bap++ = *value++; 6850880e062SHong Zhang } 6860880e062SHong Zhang } 6870880e062SHong Zhang } 6880880e062SHong Zhang noinsert2:; 6890880e062SHong Zhang low = i; 6900880e062SHong Zhang } 6910880e062SHong Zhang ailen[row] = nrow; 6920880e062SHong Zhang } 6930880e062SHong Zhang PetscFunctionReturn(0); 69449b5e25fSSatish Balay } 69549b5e25fSSatish Balay 6964a2ae208SSatish Balay #undef __FUNCT__ 6974a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ" 698dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode) 69949b5e25fSSatish Balay { 70049b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 7016849ba73SBarry Smith PetscErrorCode ierr; 70213f74950SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 70313f74950SBarry Smith PetscInt m = A->m,*ip,N,*ailen = a->ilen; 70413f74950SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 70549b5e25fSSatish Balay MatScalar *aa = a->a,*ap; 70649b5e25fSSatish Balay 70749b5e25fSSatish Balay PetscFunctionBegin; 70849b5e25fSSatish Balay if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 70949b5e25fSSatish Balay 71049b5e25fSSatish Balay if (m) rmax = ailen[0]; 71149b5e25fSSatish Balay for (i=1; i<mbs; i++) { 71249b5e25fSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 71349b5e25fSSatish Balay fshift += imax[i-1] - ailen[i-1]; 71449b5e25fSSatish Balay rmax = PetscMax(rmax,ailen[i]); 71549b5e25fSSatish Balay if (fshift) { 71649b5e25fSSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 71749b5e25fSSatish Balay N = ailen[i]; 71849b5e25fSSatish Balay for (j=0; j<N; j++) { 71949b5e25fSSatish Balay ip[j-fshift] = ip[j]; 72049b5e25fSSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 72149b5e25fSSatish Balay } 72249b5e25fSSatish Balay } 72349b5e25fSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 72449b5e25fSSatish Balay } 72549b5e25fSSatish Balay if (mbs) { 72649b5e25fSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 72749b5e25fSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 72849b5e25fSSatish Balay } 72949b5e25fSSatish Balay /* reset ilen and imax for each row */ 73049b5e25fSSatish Balay for (i=0; i<mbs; i++) { 73149b5e25fSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 73249b5e25fSSatish Balay } 7336c6c5352SBarry Smith a->nz = ai[mbs]; 73449b5e25fSSatish Balay 735b424e231SHong Zhang /* diagonals may have moved, reset it */ 736b424e231SHong Zhang if (a->diag) { 73713f74950SBarry Smith ierr = PetscMemcpy(a->diag,ai,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 73849b5e25fSSatish Balay } 73963ba0a88SBarry Smith ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n", 74063ba0a88SBarry Smith m,A->m,A->bs,fshift*bs2,a->nz*bs2));CHKERRQ(ierr); 74163ba0a88SBarry Smith ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Number of mallocs during MatSetValues is %D\n",a->reallocs));CHKERRQ(ierr); 74263ba0a88SBarry Smith ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Most nonzeros blocks in any row is %D\n",rmax));CHKERRQ(ierr); 74349b5e25fSSatish Balay a->reallocs = 0; 74449b5e25fSSatish Balay A->info.nz_unneeded = (PetscReal)fshift*bs2; 74549b5e25fSSatish Balay PetscFunctionReturn(0); 74649b5e25fSSatish Balay } 74749b5e25fSSatish Balay 74849b5e25fSSatish Balay /* 74949b5e25fSSatish Balay This function returns an array of flags which indicate the locations of contiguous 75049b5e25fSSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 75149b5e25fSSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 75249b5e25fSSatish Balay Assume: sizes should be long enough to hold all the values. 75349b5e25fSSatish Balay */ 7544a2ae208SSatish Balay #undef __FUNCT__ 7554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks" 75613f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 75749b5e25fSSatish Balay { 75813f74950SBarry Smith PetscInt i,j,k,row; 75949b5e25fSSatish Balay PetscTruth flg; 76049b5e25fSSatish Balay 76149b5e25fSSatish Balay PetscFunctionBegin; 76249b5e25fSSatish Balay for (i=0,j=0; i<n; j++) { 76349b5e25fSSatish Balay row = idx[i]; 76449b5e25fSSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 76549b5e25fSSatish Balay sizes[j] = 1; 76649b5e25fSSatish Balay i++; 76749b5e25fSSatish Balay } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */ 76849b5e25fSSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 76949b5e25fSSatish Balay i++; 77049b5e25fSSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 77149b5e25fSSatish Balay flg = PETSC_TRUE; 77249b5e25fSSatish Balay for (k=1; k<bs; k++) { 77349b5e25fSSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 77449b5e25fSSatish Balay flg = PETSC_FALSE; 77549b5e25fSSatish Balay break; 77649b5e25fSSatish Balay } 77749b5e25fSSatish Balay } 778abc0a331SBarry Smith if (flg) { /* No break in the bs */ 77949b5e25fSSatish Balay sizes[j] = bs; 78049b5e25fSSatish Balay i+= bs; 78149b5e25fSSatish Balay } else { 78249b5e25fSSatish Balay sizes[j] = 1; 78349b5e25fSSatish Balay i++; 78449b5e25fSSatish Balay } 78549b5e25fSSatish Balay } 78649b5e25fSSatish Balay } 78749b5e25fSSatish Balay *bs_max = j; 78849b5e25fSSatish Balay PetscFunctionReturn(0); 78949b5e25fSSatish Balay } 79049b5e25fSSatish Balay 79149b5e25fSSatish Balay 79249b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks). 79349b5e25fSSatish Balay Any a(i,j) with i>j input by user is ingored. 79449b5e25fSSatish Balay */ 79549b5e25fSSatish Balay 7964a2ae208SSatish Balay #undef __FUNCT__ 7974a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ" 79813f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 79949b5e25fSSatish Balay { 80049b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 8016849ba73SBarry Smith PetscErrorCode ierr; 802e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 80313f74950SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 80413f74950SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs=A->bs,brow,bcol; 80513f74950SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 80649b5e25fSSatish Balay MatScalar *ap,value,*aa=a->a,*bap; 80749b5e25fSSatish Balay 80849b5e25fSSatish Balay PetscFunctionBegin; 80949b5e25fSSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 81049b5e25fSSatish Balay row = im[k]; /* row number */ 81149b5e25fSSatish Balay brow = row/bs; /* block row number */ 81249b5e25fSSatish Balay if (row < 0) continue; 8132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 81477431f27SBarry Smith if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->m-1); 81549b5e25fSSatish Balay #endif 81649b5e25fSSatish Balay rp = aj + ai[brow]; /*ptr to beginning of column value of the row block*/ 81749b5e25fSSatish Balay ap = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/ 81849b5e25fSSatish Balay rmax = imax[brow]; /* maximum space allocated for this row */ 81949b5e25fSSatish Balay nrow = ailen[brow]; /* actual length of this row */ 82049b5e25fSSatish Balay low = 0; 82149b5e25fSSatish Balay 82249b5e25fSSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 82349b5e25fSSatish Balay if (in[l] < 0) continue; 8242515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 82577431f27SBarry Smith if (in[l] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->m-1); 82649b5e25fSSatish Balay #endif 82749b5e25fSSatish Balay col = in[l]; 82849b5e25fSSatish Balay bcol = col/bs; /* block col number */ 82949b5e25fSSatish Balay 830941593c8SHong Zhang if (brow > bcol) { 831941593c8SHong Zhang if (a->ignore_ltriangular){ 832941593c8SHong Zhang continue; /* ignore lower triangular values */ 833941593c8SHong Zhang } else { 834941593c8SHong Zhang SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)"); 835941593c8SHong Zhang } 836941593c8SHong Zhang } 837f4989cb3SHong Zhang 83849b5e25fSSatish Balay ridx = row % bs; cidx = col % bs; /*row and col index inside the block */ 8398549e402SHong Zhang if ((brow==bcol && ridx<=cidx) || (brow<bcol)){ 84049b5e25fSSatish Balay /* element value a(k,l) */ 84149b5e25fSSatish Balay if (roworiented) { 84249b5e25fSSatish Balay value = v[l + k*n]; 84349b5e25fSSatish Balay } else { 84449b5e25fSSatish Balay value = v[k + l*m]; 84549b5e25fSSatish Balay } 84649b5e25fSSatish Balay 84749b5e25fSSatish Balay /* move pointer bap to a(k,l) quickly and add/insert value */ 848e2ee6c50SBarry Smith if (col < lastcol) low = 0; high = nrow; 849e2ee6c50SBarry Smith lastcol = col; 85049b5e25fSSatish Balay while (high-low > 7) { 85149b5e25fSSatish Balay t = (low+high)/2; 85249b5e25fSSatish Balay if (rp[t] > bcol) high = t; 85349b5e25fSSatish Balay else low = t; 85449b5e25fSSatish Balay } 85549b5e25fSSatish Balay for (i=low; i<high; i++) { 85649b5e25fSSatish Balay if (rp[i] > bcol) break; 85749b5e25fSSatish Balay if (rp[i] == bcol) { 85849b5e25fSSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 85949b5e25fSSatish Balay if (is == ADD_VALUES) *bap += value; 86049b5e25fSSatish Balay else *bap = value; 8618549e402SHong Zhang /* for diag block, add/insert its symmetric element a(cidx,ridx) */ 8628549e402SHong Zhang if (brow == bcol && ridx < cidx){ 8638549e402SHong Zhang bap = ap + bs2*i + bs*ridx + cidx; 8648549e402SHong Zhang if (is == ADD_VALUES) *bap += value; 8658549e402SHong Zhang else *bap = value; 8668549e402SHong Zhang } 86749b5e25fSSatish Balay goto noinsert1; 86849b5e25fSSatish Balay } 86949b5e25fSSatish Balay } 87049b5e25fSSatish Balay 87149b5e25fSSatish Balay if (nonew == 1) goto noinsert1; 87277431f27SBarry Smith else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 87349b5e25fSSatish Balay if (nrow >= rmax) { 87449b5e25fSSatish Balay /* there is no extra room in row, therefore enlarge */ 87513f74950SBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 87649b5e25fSSatish Balay MatScalar *new_a; 87749b5e25fSSatish Balay 87877431f27SBarry Smith if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 87949b5e25fSSatish Balay 88049b5e25fSSatish Balay /* Malloc new storage space */ 881a96a251dSBarry Smith ierr = PetscMalloc3(bs2*new_nz,PetscScalar,&new_a,new_nz,PetscInt,&new_j,a->mbs+1,PetscInt,&new_i);CHKERRQ(ierr); 88249b5e25fSSatish Balay 88349b5e25fSSatish Balay /* copy over old data into new slots */ 88449b5e25fSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} 88549b5e25fSSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} 88613f74950SBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); 88749b5e25fSSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); 88813f74950SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); 88949b5e25fSSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); 89049b5e25fSSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); 89149b5e25fSSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); 89249b5e25fSSatish Balay /* free up old matrix storage */ 89349b5e25fSSatish Balay if (!a->singlemalloc) { 894a96a251dSBarry Smith ierr = PetscFree(a->a);CHKERRQ(ierr); 89549b5e25fSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); 89649b5e25fSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr); 897a96a251dSBarry Smith } else { 898a96a251dSBarry Smith ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr); 89949b5e25fSSatish Balay } 90049b5e25fSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 90149b5e25fSSatish Balay a->singlemalloc = PETSC_TRUE; 90249b5e25fSSatish Balay 90349b5e25fSSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 90449b5e25fSSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; 90552e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); 9066c6c5352SBarry Smith a->maxnz += bs2*CHUNKSIZE; 90749b5e25fSSatish Balay a->reallocs++; 9086c6c5352SBarry Smith a->nz++; 90949b5e25fSSatish Balay } 91049b5e25fSSatish Balay 91149b5e25fSSatish Balay N = nrow++ - 1; 91249b5e25fSSatish Balay /* shift up all the later entries in this row */ 91349b5e25fSSatish Balay for (ii=N; ii>=i; ii--) { 91449b5e25fSSatish Balay rp[ii+1] = rp[ii]; 91549b5e25fSSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 91649b5e25fSSatish Balay } 91749b5e25fSSatish Balay if (N>=i) { 91849b5e25fSSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 91949b5e25fSSatish Balay } 92049b5e25fSSatish Balay rp[i] = bcol; 92149b5e25fSSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 92249b5e25fSSatish Balay noinsert1:; 92349b5e25fSSatish Balay low = i; 9248549e402SHong Zhang } 92549b5e25fSSatish Balay } /* end of loop over added columns */ 92649b5e25fSSatish Balay ailen[brow] = nrow; 92749b5e25fSSatish Balay } /* end of loop over added rows */ 92849b5e25fSSatish Balay PetscFunctionReturn(0); 92949b5e25fSSatish Balay } 93049b5e25fSSatish Balay 9316849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ(Mat,IS,MatFactorInfo*,Mat*); 9326849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactor_SeqSBAIJ(Mat,IS,MatFactorInfo*); 93313f74950SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_SeqSBAIJ(Mat,PetscInt,IS[],PetscInt); 93413f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrix_SeqSBAIJ(Mat,IS,IS,PetscInt,MatReuse,Mat*); 93513f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_SeqSBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat*[]); 9366849ba73SBarry Smith EXTERN PetscErrorCode MatScale_SeqSBAIJ(const PetscScalar*,Mat); 9376849ba73SBarry Smith EXTERN PetscErrorCode MatNorm_SeqSBAIJ(Mat,NormType,PetscReal *); 9386849ba73SBarry Smith EXTERN PetscErrorCode MatEqual_SeqSBAIJ(Mat,Mat,PetscTruth*); 9396849ba73SBarry Smith EXTERN PetscErrorCode MatGetDiagonal_SeqSBAIJ(Mat,Vec); 9406849ba73SBarry Smith EXTERN PetscErrorCode MatDiagonalScale_SeqSBAIJ(Mat,Vec,Vec); 9416849ba73SBarry Smith EXTERN PetscErrorCode MatGetInfo_SeqSBAIJ(Mat,MatInfoType,MatInfo *); 9426849ba73SBarry Smith EXTERN PetscErrorCode MatZeroEntries_SeqSBAIJ(Mat); 9436849ba73SBarry Smith EXTERN PetscErrorCode MatGetRowMax_SeqSBAIJ(Mat,Vec); 94449b5e25fSSatish Balay 9456849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N(Mat,Vec,Vec); 9466849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1(Mat,Vec,Vec); 9476849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2(Mat,Vec,Vec); 9486849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3(Mat,Vec,Vec); 9496849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4(Mat,Vec,Vec); 9506849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5(Mat,Vec,Vec); 9516849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6(Mat,Vec,Vec); 9526849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7(Mat,Vec,Vec); 95349b5e25fSSatish Balay 9546849ba73SBarry Smith EXTERN PetscErrorCode MatSolves_SeqSBAIJ_1(Mat,Vecs,Vecs); 955d59c15a7SBarry Smith 9566849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1_NaturalOrdering(Mat,Vec,Vec); 9576849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2_NaturalOrdering(Mat,Vec,Vec); 9586849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3_NaturalOrdering(Mat,Vec,Vec); 9596849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4_NaturalOrdering(Mat,Vec,Vec); 9606849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5_NaturalOrdering(Mat,Vec,Vec); 9616849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6_NaturalOrdering(Mat,Vec,Vec); 9626849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7_NaturalOrdering(Mat,Vec,Vec); 9636849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N_NaturalOrdering(Mat,Vec,Vec); 96407f98182SSatish Balay 965af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat,MatFactorInfo*,Mat*); 966af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat,MatFactorInfo*,Mat*); 967af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat,MatFactorInfo*,Mat*); 968af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat,MatFactorInfo*,Mat*); 969af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat,MatFactorInfo*,Mat*); 970af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat,MatFactorInfo*,Mat*); 971af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat,MatFactorInfo*,Mat*); 972af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat,MatFactorInfo*,Mat*); 97313f74950SBarry Smith EXTERN PetscErrorCode MatGetInertia_SeqSBAIJ(Mat,PetscInt*,PetscInt*,PetscInt*); 97449b5e25fSSatish Balay 9756849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_1(Mat,Vec,Vec); 9766849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_2(Mat,Vec,Vec); 9776849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_3(Mat,Vec,Vec); 9786849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_4(Mat,Vec,Vec); 9796849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_5(Mat,Vec,Vec); 9806849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_6(Mat,Vec,Vec); 9816849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_7(Mat,Vec,Vec); 9826849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_N(Mat,Vec,Vec); 98349b5e25fSSatish Balay 9846849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_1(Mat,Vec,Vec,Vec); 9856849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_2(Mat,Vec,Vec,Vec); 9866849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_3(Mat,Vec,Vec,Vec); 9876849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_4(Mat,Vec,Vec,Vec); 9886849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_5(Mat,Vec,Vec,Vec); 9896849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_6(Mat,Vec,Vec,Vec); 9906849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_7(Mat,Vec,Vec,Vec); 9916849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_N(Mat,Vec,Vec,Vec); 99249b5e25fSSatish Balay 9934d101231SSatish Balay #ifdef HAVE_MatICCFactor 9946849ba73SBarry Smith /* modified from MatILUFactor_SeqSBAIJ, needs further work! */ 9954a2ae208SSatish Balay #undef __FUNCT__ 9964d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ" 997dfbe8321SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,MatFactorInfo *info) 99849b5e25fSSatish Balay { 9994ccecd49SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)inA->data; 100049b5e25fSSatish Balay Mat outA; 1001dfbe8321SBarry Smith PetscErrorCode ierr; 100249b5e25fSSatish Balay PetscTruth row_identity,col_identity; 100349b5e25fSSatish Balay 100449b5e25fSSatish Balay PetscFunctionBegin; 100549b5e25fSSatish Balay outA = inA; 10061260e1f8SHong Zhang inA->factor = FACTOR_CHOLESKY; 100749b5e25fSSatish Balay 100849b5e25fSSatish Balay if (!a->diag) { 10091a3463dfSHong Zhang ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr); 101049b5e25fSSatish Balay } 101149b5e25fSSatish Balay /* 101249b5e25fSSatish Balay Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver 101349b5e25fSSatish Balay for ILU(0) factorization with natural ordering 101449b5e25fSSatish Balay */ 101549b5e25fSSatish Balay switch (a->bs) { 101649b5e25fSSatish Balay case 1: 10170fe9e5beSBarry Smith inA->ops->solve = MatSolve_SeqSBAIJ_1_NaturalOrdering; 101807f98182SSatish Balay inA->ops->solvetranspose = MatSolve_SeqSBAIJ_1_NaturalOrdering; 1019d59c15a7SBarry Smith inA->ops->solves = MatSolves_SeqSBAIJ_1; 102063ba0a88SBarry Smith ierr = PetscLoginfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering solvetrans BS=1\n"));CHKERRQ(ierr); 102149b5e25fSSatish Balay case 2: 10221a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering; 10231a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_2_NaturalOrdering; 10241a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_2_NaturalOrdering; 102563ba0a88SBarry Smith ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=2\n"));CHKERRQ(ierr); 102649b5e25fSSatish Balay break; 102749b5e25fSSatish Balay case 3: 10281a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering; 10291a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_3_NaturalOrdering; 10301a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_3_NaturalOrdering; 103163ba0a88SBarry Smith ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=3\n"));CHKERRQ(ierr); 103249b5e25fSSatish Balay break; 103349b5e25fSSatish Balay case 4: 10341a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering; 10351a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_4_NaturalOrdering; 10361a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_4_NaturalOrdering; 103763ba0a88SBarry Smith ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=4\n"));CHKERRQ(ierr); 103849b5e25fSSatish Balay break; 103949b5e25fSSatish Balay case 5: 10401a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering; 10411a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_5_NaturalOrdering; 10421a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_5_NaturalOrdering; 104363ba0a88SBarry Smith ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=5\n"));CHKERRQ(ierr); 104449b5e25fSSatish Balay break; 104549b5e25fSSatish Balay case 6: 10461a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering; 10471a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_6_NaturalOrdering; 10481a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_6_NaturalOrdering; 104963ba0a88SBarry Smith ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=6\n"));CHKERRQ(ierr); 105049b5e25fSSatish Balay break; 105149b5e25fSSatish Balay case 7: 10521a3463dfSHong Zhang inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering; 10531a3463dfSHong Zhang inA->ops->solvetranspose = MatSolve_SeqSBAIJ_7_NaturalOrdering; 10541a3463dfSHong Zhang inA->ops->solve = MatSolve_SeqSBAIJ_7_NaturalOrdering; 105563ba0a88SBarry Smith ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=7\n"));CHKERRQ(ierr); 105649b5e25fSSatish Balay break; 105749b5e25fSSatish Balay default: 105849b5e25fSSatish Balay a->row = row; 10591a3463dfSHong Zhang a->icol = col; 106049b5e25fSSatish Balay ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 106149b5e25fSSatish Balay ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 106249b5e25fSSatish Balay 106349b5e25fSSatish Balay /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 106449b5e25fSSatish Balay ierr = ISInvertPermutation(col,PETSC_DECIDE, &(a->icol));CHKERRQ(ierr); 106552e6d16bSBarry Smith ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr); 106649b5e25fSSatish Balay 106749b5e25fSSatish Balay if (!a->solve_work) { 106887828ca2SBarry Smith ierr = PetscMalloc((A->m+a->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 106952e6d16bSBarry Smith ierr = PetscLogObjectMemory(inA,(A->m+a->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 107049b5e25fSSatish Balay } 107149b5e25fSSatish Balay } 107249b5e25fSSatish Balay 1073af281ebdSHong Zhang ierr = MatCholeskyFactorNumeric(inA,info,&outA);CHKERRQ(ierr); 107449b5e25fSSatish Balay PetscFunctionReturn(0); 107549b5e25fSSatish Balay } 1076950f1e5bSHong Zhang #endif 1077950f1e5bSHong Zhang 10784a2ae208SSatish Balay #undef __FUNCT__ 10794a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_SeqSBAIJ" 1080dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat A) 108149b5e25fSSatish Balay { 108249b5e25fSSatish Balay static PetscTruth called = PETSC_FALSE; 108349b5e25fSSatish Balay MPI_Comm comm = A->comm; 1084dfbe8321SBarry Smith PetscErrorCode ierr; 108549b5e25fSSatish Balay 108649b5e25fSSatish Balay PetscFunctionBegin; 108749b5e25fSSatish Balay if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 108849b5e25fSSatish Balay ierr = (*PetscHelpPrintf)(comm," Options for MATSEQSBAIJ and MATMPISBAIJ matrix formats (the defaults):\n");CHKERRQ(ierr); 108949b5e25fSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mat_block_size <block_size>\n");CHKERRQ(ierr); 1090941593c8SHong Zhang ierr = (*PetscHelpPrintf)(comm," -mat_ignore_ltriangular: Ignore lower triangular values set by user\n");CHKERRQ(ierr); 109149b5e25fSSatish Balay PetscFunctionReturn(0); 109249b5e25fSSatish Balay } 109349b5e25fSSatish Balay 109449b5e25fSSatish Balay EXTERN_C_BEGIN 10954a2ae208SSatish Balay #undef __FUNCT__ 10964a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ" 1097be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices) 109849b5e25fSSatish Balay { 1099045c9aa0SHong Zhang Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data; 110013f74950SBarry Smith PetscInt i,nz,n; 110149b5e25fSSatish Balay 110249b5e25fSSatish Balay PetscFunctionBegin; 11036c6c5352SBarry Smith nz = baij->maxnz; 1104c464158bSHong Zhang n = mat->n; 110549b5e25fSSatish Balay for (i=0; i<nz; i++) { 110649b5e25fSSatish Balay baij->j[i] = indices[i]; 110749b5e25fSSatish Balay } 11086c6c5352SBarry Smith baij->nz = nz; 110949b5e25fSSatish Balay for (i=0; i<n; i++) { 111049b5e25fSSatish Balay baij->ilen[i] = baij->imax[i]; 111149b5e25fSSatish Balay } 111249b5e25fSSatish Balay PetscFunctionReturn(0); 111349b5e25fSSatish Balay } 111449b5e25fSSatish Balay EXTERN_C_END 111549b5e25fSSatish Balay 11164a2ae208SSatish Balay #undef __FUNCT__ 11174a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices" 111849b5e25fSSatish Balay /*@ 111919585528SSatish Balay MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows 112049b5e25fSSatish Balay in the matrix. 112149b5e25fSSatish Balay 112249b5e25fSSatish Balay Input Parameters: 112319585528SSatish Balay + mat - the SeqSBAIJ matrix 112449b5e25fSSatish Balay - indices - the column indices 112549b5e25fSSatish Balay 112649b5e25fSSatish Balay Level: advanced 112749b5e25fSSatish Balay 112849b5e25fSSatish Balay Notes: 112949b5e25fSSatish Balay This can be called if you have precomputed the nonzero structure of the 113049b5e25fSSatish Balay matrix and want to provide it to the matrix object to improve the performance 113149b5e25fSSatish Balay of the MatSetValues() operation. 113249b5e25fSSatish Balay 113349b5e25fSSatish Balay You MUST have set the correct numbers of nonzeros per row in the call to 1134d1be2dadSMatthew Knepley MatCreateSeqSBAIJ(), and the columns indices MUST be sorted. 113549b5e25fSSatish Balay 1136ab9f2c04SSatish Balay MUST be called before any calls to MatSetValues() 113749b5e25fSSatish Balay 1138ab9f2c04SSatish Balay .seealso: MatCreateSeqSBAIJ 113949b5e25fSSatish Balay @*/ 1140be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices) 114149b5e25fSSatish Balay { 114213f74950SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt *); 114349b5e25fSSatish Balay 114449b5e25fSSatish Balay PetscFunctionBegin; 11454482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 11464482741eSBarry Smith PetscValidPointer(indices,2); 1147c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqSBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 114849b5e25fSSatish Balay if (f) { 114949b5e25fSSatish Balay ierr = (*f)(mat,indices);CHKERRQ(ierr); 115049b5e25fSSatish Balay } else { 1151e005ede5SBarry Smith SETERRQ(PETSC_ERR_SUP,"Wrong type of matrix to set column indices"); 115249b5e25fSSatish Balay } 115349b5e25fSSatish Balay PetscFunctionReturn(0); 115449b5e25fSSatish Balay } 115549b5e25fSSatish Balay 11564a2ae208SSatish Balay #undef __FUNCT__ 11574a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqSBAIJ" 1158dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqSBAIJ(Mat A) 1159273d9f13SBarry Smith { 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161273d9f13SBarry Smith 1162273d9f13SBarry Smith PetscFunctionBegin; 1163*ab93d7beSBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,1,PETSC_DEFAULT,0);CHKERRQ(ierr); 1164273d9f13SBarry Smith PetscFunctionReturn(0); 1165273d9f13SBarry Smith } 1166273d9f13SBarry Smith 1167a6ece127SHong Zhang #undef __FUNCT__ 1168a6ece127SHong Zhang #define __FUNCT__ "MatGetArray_SeqSBAIJ" 1169dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1170a6ece127SHong Zhang { 1171a6ece127SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1172a6ece127SHong Zhang PetscFunctionBegin; 1173a6ece127SHong Zhang *array = a->a; 1174a6ece127SHong Zhang PetscFunctionReturn(0); 1175a6ece127SHong Zhang } 1176a6ece127SHong Zhang 1177a6ece127SHong Zhang #undef __FUNCT__ 1178a6ece127SHong Zhang #define __FUNCT__ "MatRestoreArray_SeqSBAIJ" 1179dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[]) 1180a6ece127SHong Zhang { 1181a6ece127SHong Zhang PetscFunctionBegin; 1182a6ece127SHong Zhang PetscFunctionReturn(0); 1183a6ece127SHong Zhang } 1184a6ece127SHong Zhang 118542ee4b1aSHong Zhang #include "petscblaslapack.h" 118642ee4b1aSHong Zhang #undef __FUNCT__ 118742ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ" 1188dfbe8321SBarry Smith PetscErrorCode MatAXPY_SeqSBAIJ(const PetscScalar *a,Mat X,Mat Y,MatStructure str) 118942ee4b1aSHong Zhang { 119042ee4b1aSHong Zhang Mat_SeqSBAIJ *x=(Mat_SeqSBAIJ *)X->data, *y=(Mat_SeqSBAIJ *)Y->data; 1191dfbe8321SBarry Smith PetscErrorCode ierr; 1192521d7252SBarry Smith PetscInt i,bs=Y->bs,bs2,j; 11934ce68768SBarry Smith PetscBLASInt bnz = (PetscBLASInt)x->nz,one = 1; 119442ee4b1aSHong Zhang 119542ee4b1aSHong Zhang PetscFunctionBegin; 119642ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 119771044d3cSBarry Smith BLASaxpy_(&bnz,(PetscScalar*)a,x->a,&one,y->a,&one); 1198c537a176SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1199c4319e64SHong Zhang if (y->xtoy && y->XtoY != X) { 1200c4319e64SHong Zhang ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 1201c4319e64SHong Zhang ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 1202c537a176SHong Zhang } 1203c4319e64SHong Zhang if (!y->xtoy) { /* get xtoy */ 1204c4319e64SHong Zhang ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 1205c4319e64SHong Zhang y->XtoY = X; 1206c537a176SHong Zhang } 1207c4319e64SHong Zhang bs2 = bs*bs; 12086c6c5352SBarry Smith for (i=0; i<x->nz; i++) { 1209c4319e64SHong Zhang j = 0; 1210c4319e64SHong Zhang while (j < bs2){ 12116550863bSHong Zhang y->a[bs2*y->xtoy[i]+j] += (*a)*(x->a[bs2*i+j]); 1212c4319e64SHong Zhang j++; 1213c537a176SHong Zhang } 1214c4319e64SHong Zhang } 121563ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAXPY_SeqSBAIJ: ratio of nnz_s(X)/nnz_s(Y): %D/%D = %g\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz)));CHKERRQ(ierr); 121642ee4b1aSHong Zhang } else { 121742ee4b1aSHong Zhang ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr); 121842ee4b1aSHong Zhang } 121942ee4b1aSHong Zhang PetscFunctionReturn(0); 122042ee4b1aSHong Zhang } 122142ee4b1aSHong Zhang 1222efcf0fc3SBarry Smith #undef __FUNCT__ 1223efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ" 1224dfbe8321SBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscTruth *flg) 1225efcf0fc3SBarry Smith { 1226efcf0fc3SBarry Smith PetscFunctionBegin; 1227efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1228efcf0fc3SBarry Smith PetscFunctionReturn(0); 1229efcf0fc3SBarry Smith } 1230efcf0fc3SBarry Smith 1231efcf0fc3SBarry Smith #undef __FUNCT__ 1232efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscTruth *flg) 1234efcf0fc3SBarry Smith { 1235efcf0fc3SBarry Smith PetscFunctionBegin; 1236efcf0fc3SBarry Smith *flg = PETSC_TRUE; 1237efcf0fc3SBarry Smith PetscFunctionReturn(0); 1238efcf0fc3SBarry Smith } 1239efcf0fc3SBarry Smith 1240efcf0fc3SBarry Smith #undef __FUNCT__ 1241efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ" 1242dfbe8321SBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscTruth *flg) 1243efcf0fc3SBarry Smith { 1244efcf0fc3SBarry Smith PetscFunctionBegin; 1245efcf0fc3SBarry Smith *flg = PETSC_FALSE; 1246efcf0fc3SBarry Smith PetscFunctionReturn(0); 1247efcf0fc3SBarry Smith } 1248efcf0fc3SBarry Smith 124949b5e25fSSatish Balay /* -------------------------------------------------------------------*/ 125049b5e25fSSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ, 125149b5e25fSSatish Balay MatGetRow_SeqSBAIJ, 125249b5e25fSSatish Balay MatRestoreRow_SeqSBAIJ, 125349b5e25fSSatish Balay MatMult_SeqSBAIJ_N, 125497304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N, 1255e005ede5SBarry Smith MatMult_SeqSBAIJ_N, 1256e005ede5SBarry Smith MatMultAdd_SeqSBAIJ_N, 125749b5e25fSSatish Balay MatSolve_SeqSBAIJ_N, 125849b5e25fSSatish Balay 0, 125949b5e25fSSatish Balay 0, 126097304618SKris Buschelman /*10*/ 0, 126149b5e25fSSatish Balay 0, 12625f4ef2deSHong Zhang MatCholeskyFactor_SeqSBAIJ, 1263d06b337dSHong Zhang MatRelax_SeqSBAIJ, 126449b5e25fSSatish Balay MatTranspose_SeqSBAIJ, 126597304618SKris Buschelman /*15*/ MatGetInfo_SeqSBAIJ, 126649b5e25fSSatish Balay MatEqual_SeqSBAIJ, 126749b5e25fSSatish Balay MatGetDiagonal_SeqSBAIJ, 126849b5e25fSSatish Balay MatDiagonalScale_SeqSBAIJ, 126949b5e25fSSatish Balay MatNorm_SeqSBAIJ, 127097304618SKris Buschelman /*20*/ 0, 127149b5e25fSSatish Balay MatAssemblyEnd_SeqSBAIJ, 127249b5e25fSSatish Balay 0, 127349b5e25fSSatish Balay MatSetOption_SeqSBAIJ, 127449b5e25fSSatish Balay MatZeroEntries_SeqSBAIJ, 1275dcf5cc72SBarry Smith /*25*/ 0, 127649b5e25fSSatish Balay 0, 127749b5e25fSSatish Balay 0, 12785f4ef2deSHong Zhang MatCholeskyFactorSymbolic_SeqSBAIJ, 12795f4ef2deSHong Zhang MatCholeskyFactorNumeric_SeqSBAIJ_N, 128097304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqSBAIJ, 1281c464158bSHong Zhang 0, 12824d101231SSatish Balay MatICCFactorSymbolic_SeqSBAIJ, 1283a6ece127SHong Zhang MatGetArray_SeqSBAIJ, 1284a6ece127SHong Zhang MatRestoreArray_SeqSBAIJ, 128597304618SKris Buschelman /*35*/ MatDuplicate_SeqSBAIJ, 128649b5e25fSSatish Balay 0, 128749b5e25fSSatish Balay 0, 128849b5e25fSSatish Balay 0, 1289950f1e5bSHong Zhang 0, 129097304618SKris Buschelman /*40*/ MatAXPY_SeqSBAIJ, 129149b5e25fSSatish Balay MatGetSubMatrices_SeqSBAIJ, 129249b5e25fSSatish Balay MatIncreaseOverlap_SeqSBAIJ, 129349b5e25fSSatish Balay MatGetValues_SeqSBAIJ, 129449b5e25fSSatish Balay 0, 129597304618SKris Buschelman /*45*/ MatPrintHelp_SeqSBAIJ, 129649b5e25fSSatish Balay MatScale_SeqSBAIJ, 129749b5e25fSSatish Balay 0, 129849b5e25fSSatish Balay 0, 129949b5e25fSSatish Balay 0, 1300521d7252SBarry Smith /*50*/ 0, 130149b5e25fSSatish Balay MatGetRowIJ_SeqSBAIJ, 130249b5e25fSSatish Balay MatRestoreRowIJ_SeqSBAIJ, 130349b5e25fSSatish Balay 0, 130449b5e25fSSatish Balay 0, 130597304618SKris Buschelman /*55*/ 0, 130649b5e25fSSatish Balay 0, 130749b5e25fSSatish Balay 0, 130849b5e25fSSatish Balay 0, 130949b5e25fSSatish Balay MatSetValuesBlocked_SeqSBAIJ, 131097304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqSBAIJ, 131149b5e25fSSatish Balay 0, 131249b5e25fSSatish Balay 0, 13138a124369SBarry Smith MatGetPetscMaps_Petsc, 1314d959ec07SHong Zhang 0, 131597304618SKris Buschelman /*65*/ 0, 1316d959ec07SHong Zhang 0, 1317d959ec07SHong Zhang 0, 1318d959ec07SHong Zhang 0, 1319d959ec07SHong Zhang 0, 132097304618SKris Buschelman /*70*/ MatGetRowMax_SeqSBAIJ, 13213e0d88b5SBarry Smith 0, 13223e0d88b5SBarry Smith 0, 13233e0d88b5SBarry Smith 0, 13243e0d88b5SBarry Smith 0, 132597304618SKris Buschelman /*75*/ 0, 13263e0d88b5SBarry Smith 0, 13273e0d88b5SBarry Smith 0, 13283e0d88b5SBarry Smith 0, 13293e0d88b5SBarry Smith 0, 133097304618SKris Buschelman /*80*/ 0, 13313e0d88b5SBarry Smith 0, 13323e0d88b5SBarry Smith 0, 13333e0d88b5SBarry Smith #if !defined(PETSC_USE_COMPLEX) 133497304618SKris Buschelman MatGetInertia_SeqSBAIJ, 13353e0d88b5SBarry Smith #else 133697304618SKris Buschelman 0, 13373e0d88b5SBarry Smith #endif 1338865e5f61SKris Buschelman MatLoad_SeqSBAIJ, 1339865e5f61SKris Buschelman /*85*/ MatIsSymmetric_SeqSBAIJ, 1340865e5f61SKris Buschelman MatIsHermitian_SeqSBAIJ, 1341efcf0fc3SBarry Smith MatIsStructurallySymmetric_SeqSBAIJ, 1342865e5f61SKris Buschelman 0, 1343865e5f61SKris Buschelman 0, 1344865e5f61SKris Buschelman /*90*/ 0, 1345865e5f61SKris Buschelman 0, 1346865e5f61SKris Buschelman 0, 1347865e5f61SKris Buschelman 0, 1348865e5f61SKris Buschelman 0, 1349865e5f61SKris Buschelman /*95*/ 0, 1350865e5f61SKris Buschelman 0, 1351865e5f61SKris Buschelman 0, 1352865e5f61SKris Buschelman 0}; 1353be1d678aSKris Buschelman 135449b5e25fSSatish Balay EXTERN_C_BEGIN 13554a2ae208SSatish Balay #undef __FUNCT__ 13564a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ" 1357be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqSBAIJ(Mat mat) 135849b5e25fSSatish Balay { 13594afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data; 1360521d7252SBarry Smith PetscInt nz = aij->i[mat->m]*mat->bs*aij->bs2; 1361dfbe8321SBarry Smith PetscErrorCode ierr; 136249b5e25fSSatish Balay 136349b5e25fSSatish Balay PetscFunctionBegin; 136449b5e25fSSatish Balay if (aij->nonew != 1) { 1365e005ede5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first"); 136649b5e25fSSatish Balay } 136749b5e25fSSatish Balay 136849b5e25fSSatish Balay /* allocate space for values if not already there */ 136949b5e25fSSatish Balay if (!aij->saved_values) { 137087828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 137149b5e25fSSatish Balay } 137249b5e25fSSatish Balay 137349b5e25fSSatish Balay /* copy values over */ 137487828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 137549b5e25fSSatish Balay PetscFunctionReturn(0); 137649b5e25fSSatish Balay } 137749b5e25fSSatish Balay EXTERN_C_END 137849b5e25fSSatish Balay 137949b5e25fSSatish Balay EXTERN_C_BEGIN 13804a2ae208SSatish Balay #undef __FUNCT__ 13814a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ" 1382be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqSBAIJ(Mat mat) 138349b5e25fSSatish Balay { 13844afc71dfSHong Zhang Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data; 13856849ba73SBarry Smith PetscErrorCode ierr; 1386521d7252SBarry Smith PetscInt nz = aij->i[mat->m]*mat->bs*aij->bs2; 138749b5e25fSSatish Balay 138849b5e25fSSatish Balay PetscFunctionBegin; 138949b5e25fSSatish Balay if (aij->nonew != 1) { 1390e005ede5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first"); 139149b5e25fSSatish Balay } 139249b5e25fSSatish Balay if (!aij->saved_values) { 1393e005ede5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 139449b5e25fSSatish Balay } 139549b5e25fSSatish Balay 139649b5e25fSSatish Balay /* copy values over */ 139787828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 139849b5e25fSSatish Balay PetscFunctionReturn(0); 139949b5e25fSSatish Balay } 140049b5e25fSSatish Balay EXTERN_C_END 140149b5e25fSSatish Balay 14028549e402SHong Zhang EXTERN_C_BEGIN 14034a2ae208SSatish Balay #undef __FUNCT__ 1404a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ" 1405be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 140649b5e25fSSatish Balay { 1407c464158bSHong Zhang Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ*)B->data; 14086849ba73SBarry Smith PetscErrorCode ierr; 1409*ab93d7beSBarry Smith PetscInt i,mbs,bs2; 1410*ab93d7beSBarry Smith PetscTruth skipallocation = PETSC_FALSE,flg; 141149b5e25fSSatish Balay 141249b5e25fSSatish Balay PetscFunctionBegin; 1413273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1414e82a3eeeSBarry Smith ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1415c464158bSHong Zhang mbs = B->m/bs; 141649b5e25fSSatish Balay bs2 = bs*bs; 141749b5e25fSSatish Balay 1418c464158bSHong Zhang if (mbs*bs != B->m) { 141929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize"); 142049b5e25fSSatish Balay } 142149b5e25fSSatish Balay 1422*ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 1423*ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 1424*ab93d7beSBarry Smith nz = 0; 1425*ab93d7beSBarry Smith } 1426*ab93d7beSBarry Smith 1427435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3; 142877431f27SBarry Smith if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 142949b5e25fSSatish Balay if (nnz) { 143049b5e25fSSatish Balay for (i=0; i<mbs; i++) { 143177431f27SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 143277431f27SBarry Smith if (nnz[i] > mbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],mbs); 143349b5e25fSSatish Balay } 143449b5e25fSSatish Balay } 143549b5e25fSSatish Balay 1436e82a3eeeSBarry Smith ierr = PetscOptionsHasName(B->prefix,"-mat_no_unroll",&flg);CHKERRQ(ierr); 143749b5e25fSSatish Balay if (!flg) { 143849b5e25fSSatish Balay switch (bs) { 143949b5e25fSSatish Balay case 1: 14404ccecd49SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1; 144149b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_1; 1442d59c15a7SBarry Smith B->ops->solves = MatSolves_SeqSBAIJ_1; 1443e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_1; 144449b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_1; 144549b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_1; 144649b5e25fSSatish Balay break; 144749b5e25fSSatish Balay case 2: 14484ccecd49SHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2; 144949b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_2; 1450e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_2; 145149b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_2; 145249b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_2; 145349b5e25fSSatish Balay break; 145449b5e25fSSatish Balay case 3: 14555f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3; 145649b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_3; 1457e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_3; 145849b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_3; 145949b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_3; 146049b5e25fSSatish Balay break; 146149b5e25fSSatish Balay case 4: 14625f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4; 146349b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_4; 1464e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_4; 146549b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_4; 146649b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_4; 146749b5e25fSSatish Balay break; 146849b5e25fSSatish Balay case 5: 14695f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5; 147049b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_5; 1471e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_5; 147249b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_5; 147349b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_5; 147449b5e25fSSatish Balay break; 147549b5e25fSSatish Balay case 6: 14765f4ef2deSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6; 147749b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_6; 1478e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_6; 147949b5e25fSSatish Balay B->ops->mult = MatMult_SeqSBAIJ_6; 148049b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_6; 148149b5e25fSSatish Balay break; 148249b5e25fSSatish Balay case 7: 1483de53e5efSHong Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7; 148449b5e25fSSatish Balay B->ops->solve = MatSolve_SeqSBAIJ_7; 1485e005ede5SBarry Smith B->ops->solvetranspose = MatSolve_SeqSBAIJ_7; 1486de53e5efSHong Zhang B->ops->mult = MatMult_SeqSBAIJ_7; 148749b5e25fSSatish Balay B->ops->multadd = MatMultAdd_SeqSBAIJ_7; 148849b5e25fSSatish Balay break; 148949b5e25fSSatish Balay } 149049b5e25fSSatish Balay } 149149b5e25fSSatish Balay 149249b5e25fSSatish Balay b->mbs = mbs; 14934afc71dfSHong Zhang b->nbs = mbs; 1494*ab93d7beSBarry Smith if (!skipallocation) { 1495*ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 1496*ab93d7beSBarry Smith ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr); 1497*ab93d7beSBarry Smith for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 149849b5e25fSSatish Balay if (!nnz) { 1499435da068SBarry Smith if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 150049b5e25fSSatish Balay else if (nz <= 0) nz = 1; 150149b5e25fSSatish Balay for (i=0; i<mbs; i++) { 15028cef66ccSHong Zhang b->imax[i] = nz; 150349b5e25fSSatish Balay } 1504153ea458SHong Zhang nz = nz*mbs; /* total nz */ 150549b5e25fSSatish Balay } else { 150649b5e25fSSatish Balay nz = 0; 15078cef66ccSHong Zhang for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 150849b5e25fSSatish Balay } 15096c6c5352SBarry Smith /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */ 151049b5e25fSSatish Balay 151149b5e25fSSatish Balay /* allocate the matrix space */ 1512a96a251dSBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->m+1,PetscInt,&b->i);CHKERRQ(ierr); 15136c6c5352SBarry Smith ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 151413f74950SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 151549b5e25fSSatish Balay b->singlemalloc = PETSC_TRUE; 151649b5e25fSSatish Balay 151749b5e25fSSatish Balay /* pointer to beginning of each row */ 151849b5e25fSSatish Balay b->i[0] = 0; 151949b5e25fSSatish Balay for (i=1; i<mbs+1; i++) { 152049b5e25fSSatish Balay b->i[i] = b->i[i-1] + b->imax[i-1]; 152149b5e25fSSatish Balay } 1522*ab93d7beSBarry Smith } 152349b5e25fSSatish Balay 1524521d7252SBarry Smith B->bs = bs; 152549b5e25fSSatish Balay b->bs2 = bs2; 15266c6c5352SBarry Smith b->nz = 0; 15276c6c5352SBarry Smith b->maxnz = nz*bs2; 1528153ea458SHong Zhang 152916cdd363SHong Zhang b->inew = 0; 153016cdd363SHong Zhang b->jnew = 0; 153116cdd363SHong Zhang b->anew = 0; 153216cdd363SHong Zhang b->a2anew = 0; 15331a3463dfSHong Zhang b->permute = PETSC_FALSE; 1534c464158bSHong Zhang PetscFunctionReturn(0); 1535c464158bSHong Zhang } 1536a23d5eceSKris Buschelman EXTERN_C_END 1537153ea458SHong Zhang 1538d769727bSBarry Smith EXTERN_C_BEGIN 1539be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqAIJ(Mat,const MatType,MatReuse,Mat*); 1540be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqBAIJ(Mat,const MatType,MatReuse,Mat*); 1541d769727bSBarry Smith EXTERN_C_END 1542d769727bSBarry Smith 15430bad9183SKris Buschelman /*MC 1544fafad747SKris Buschelman MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices, 15450bad9183SKris Buschelman based on block compressed sparse row format. Only the upper triangular portion of the matrix is stored. 15460bad9183SKris Buschelman 15470bad9183SKris Buschelman Options Database Keys: 15480bad9183SKris Buschelman . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions() 15490bad9183SKris Buschelman 15500bad9183SKris Buschelman Level: beginner 15510bad9183SKris Buschelman 15520bad9183SKris Buschelman .seealso: MatCreateSeqSBAIJ 15530bad9183SKris Buschelman M*/ 15540bad9183SKris Buschelman 1555a23d5eceSKris Buschelman EXTERN_C_BEGIN 1556a23d5eceSKris Buschelman #undef __FUNCT__ 1557a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ" 1558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqSBAIJ(Mat B) 1559a23d5eceSKris Buschelman { 1560a23d5eceSKris Buschelman Mat_SeqSBAIJ *b; 1561dfbe8321SBarry Smith PetscErrorCode ierr; 156213f74950SBarry Smith PetscMPIInt size; 1563941593c8SHong Zhang PetscTruth flg; 1564a23d5eceSKris Buschelman 1565a23d5eceSKris Buschelman PetscFunctionBegin; 1566a23d5eceSKris Buschelman ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr); 1567a23d5eceSKris Buschelman if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 1568a23d5eceSKris Buschelman B->m = B->M = PetscMax(B->m,B->M); 1569a23d5eceSKris Buschelman B->n = B->N = PetscMax(B->n,B->N); 1570a23d5eceSKris Buschelman 1571a23d5eceSKris Buschelman ierr = PetscNew(Mat_SeqSBAIJ,&b);CHKERRQ(ierr); 1572a23d5eceSKris Buschelman B->data = (void*)b; 1573a23d5eceSKris Buschelman ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1574a23d5eceSKris Buschelman B->ops->destroy = MatDestroy_SeqSBAIJ; 1575a23d5eceSKris Buschelman B->ops->view = MatView_SeqSBAIJ; 1576a23d5eceSKris Buschelman B->factor = 0; 1577a23d5eceSKris Buschelman B->mapping = 0; 1578a23d5eceSKris Buschelman b->row = 0; 1579a23d5eceSKris Buschelman b->icol = 0; 1580a23d5eceSKris Buschelman b->reallocs = 0; 1581a23d5eceSKris Buschelman b->saved_values = 0; 1582a23d5eceSKris Buschelman 1583a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 1584a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 1585a23d5eceSKris Buschelman 1586a23d5eceSKris Buschelman b->sorted = PETSC_FALSE; 1587a23d5eceSKris Buschelman b->roworiented = PETSC_TRUE; 1588a23d5eceSKris Buschelman b->nonew = 0; 1589a23d5eceSKris Buschelman b->diag = 0; 1590a23d5eceSKris Buschelman b->solve_work = 0; 1591a23d5eceSKris Buschelman b->mult_work = 0; 1592a23d5eceSKris Buschelman B->spptr = 0; 1593a23d5eceSKris Buschelman b->keepzeroedrows = PETSC_FALSE; 1594a23d5eceSKris Buschelman b->xtoy = 0; 1595a23d5eceSKris Buschelman b->XtoY = 0; 1596a23d5eceSKris Buschelman 1597a23d5eceSKris Buschelman b->inew = 0; 1598a23d5eceSKris Buschelman b->jnew = 0; 1599a23d5eceSKris Buschelman b->anew = 0; 1600a23d5eceSKris Buschelman b->a2anew = 0; 1601a23d5eceSKris Buschelman b->permute = PETSC_FALSE; 1602a23d5eceSKris Buschelman 1603941593c8SHong Zhang b->ignore_ltriangular = PETSC_FALSE; 1604941593c8SHong Zhang ierr = PetscOptionsHasName(PETSC_NULL,"-mat_ignore_lower_triangular",&flg);CHKERRQ(ierr); 1605941593c8SHong Zhang if (flg) b->ignore_ltriangular = PETSC_TRUE; 1606941593c8SHong Zhang 1607a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 1608a23d5eceSKris Buschelman "MatStoreValues_SeqSBAIJ", 1609a23d5eceSKris Buschelman MatStoreValues_SeqSBAIJ);CHKERRQ(ierr); 1610a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 1611a23d5eceSKris Buschelman "MatRetrieveValues_SeqSBAIJ", 1612a23d5eceSKris Buschelman (void*)MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr); 1613a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C", 1614a23d5eceSKris Buschelman "MatSeqSBAIJSetColumnIndices_SeqSBAIJ", 1615a23d5eceSKris Buschelman MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr); 16164e5e7fe4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqaij_C", 16174e5e7fe4SHong Zhang "MatConvert_SeqSBAIJ_SeqAIJ", 16184e5e7fe4SHong Zhang MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr); 1619a0e1a404SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C", 1620a0e1a404SHong Zhang "MatConvert_SeqSBAIJ_SeqBAIJ", 1621a0e1a404SHong Zhang MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr); 1622a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetPreallocation_C", 1623a23d5eceSKris Buschelman "MatSeqSBAIJSetPreallocation_SeqSBAIJ", 1624a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr); 162523ce1328SBarry Smith 162623ce1328SBarry Smith B->symmetric = PETSC_TRUE; 162723ce1328SBarry Smith B->structurally_symmetric = PETSC_TRUE; 162823ce1328SBarry Smith B->symmetric_set = PETSC_TRUE; 162923ce1328SBarry Smith B->structurally_symmetric_set = PETSC_TRUE; 1630a23d5eceSKris Buschelman PetscFunctionReturn(0); 1631a23d5eceSKris Buschelman } 1632a23d5eceSKris Buschelman EXTERN_C_END 1633a23d5eceSKris Buschelman 1634a23d5eceSKris Buschelman #undef __FUNCT__ 1635a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation" 1636a23d5eceSKris Buschelman /*@C 1637a23d5eceSKris Buschelman MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block 1638a23d5eceSKris Buschelman compressed row) format. For good matrix assembly performance the 1639a23d5eceSKris Buschelman user should preallocate the matrix storage by setting the parameter nz 1640a23d5eceSKris Buschelman (or the array nnz). By setting these parameters accurately, performance 1641a23d5eceSKris Buschelman during matrix assembly can be increased by more than a factor of 50. 1642a23d5eceSKris Buschelman 1643a23d5eceSKris Buschelman Collective on Mat 1644a23d5eceSKris Buschelman 1645a23d5eceSKris Buschelman Input Parameters: 1646a23d5eceSKris Buschelman + A - the symmetric matrix 1647a23d5eceSKris Buschelman . bs - size of block 1648a23d5eceSKris Buschelman . nz - number of block nonzeros per block row (same for all rows) 1649a23d5eceSKris Buschelman - nnz - array containing the number of block nonzeros in the upper triangular plus 1650a23d5eceSKris Buschelman diagonal portion of each block (possibly different for each block row) or PETSC_NULL 1651a23d5eceSKris Buschelman 1652a23d5eceSKris Buschelman Options Database Keys: 1653a23d5eceSKris Buschelman . -mat_no_unroll - uses code that does not unroll the loops in the 1654a23d5eceSKris Buschelman block calculations (much slower) 1655a23d5eceSKris Buschelman . -mat_block_size - size of the blocks to use 1656a23d5eceSKris Buschelman 1657a23d5eceSKris Buschelman Level: intermediate 1658a23d5eceSKris Buschelman 1659a23d5eceSKris Buschelman Notes: 1660a23d5eceSKris Buschelman Specify the preallocated storage with either nz or nnz (not both). 1661a23d5eceSKris Buschelman Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 1662a23d5eceSKris Buschelman allocation. For additional details, see the users manual chapter on 1663a23d5eceSKris Buschelman matrices. 1664a23d5eceSKris Buschelman 166549a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 166649a6f317SBarry Smith 166749a6f317SBarry Smith 1668a23d5eceSKris Buschelman .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ() 1669a23d5eceSKris Buschelman @*/ 1670be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 167113f74950SBarry Smith { 167213f74950SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]); 1673a23d5eceSKris Buschelman 1674a23d5eceSKris Buschelman PetscFunctionBegin; 1675a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1676a23d5eceSKris Buschelman if (f) { 1677a23d5eceSKris Buschelman ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 1678a23d5eceSKris Buschelman } 1679a23d5eceSKris Buschelman PetscFunctionReturn(0); 1680a23d5eceSKris Buschelman } 168149b5e25fSSatish Balay 16824a2ae208SSatish Balay #undef __FUNCT__ 16834a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ" 1684c464158bSHong Zhang /*@C 1685c464158bSHong Zhang MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block 1686c464158bSHong Zhang compressed row) format. For good matrix assembly performance the 1687c464158bSHong Zhang user should preallocate the matrix storage by setting the parameter nz 1688c464158bSHong Zhang (or the array nnz). By setting these parameters accurately, performance 1689c464158bSHong Zhang during matrix assembly can be increased by more than a factor of 50. 169049b5e25fSSatish Balay 1691c464158bSHong Zhang Collective on MPI_Comm 1692c464158bSHong Zhang 1693c464158bSHong Zhang Input Parameters: 1694c464158bSHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 1695c464158bSHong Zhang . bs - size of block 1696c464158bSHong Zhang . m - number of rows, or number of columns 1697c464158bSHong Zhang . nz - number of block nonzeros per block row (same for all rows) 1698744e8345SSatish Balay - nnz - array containing the number of block nonzeros in the upper triangular plus 1699744e8345SSatish Balay diagonal portion of each block (possibly different for each block row) or PETSC_NULL 1700c464158bSHong Zhang 1701c464158bSHong Zhang Output Parameter: 1702c464158bSHong Zhang . A - the symmetric matrix 1703c464158bSHong Zhang 1704c464158bSHong Zhang Options Database Keys: 1705c464158bSHong Zhang . -mat_no_unroll - uses code that does not unroll the loops in the 1706c464158bSHong Zhang block calculations (much slower) 1707c464158bSHong Zhang . -mat_block_size - size of the blocks to use 1708c464158bSHong Zhang 1709c464158bSHong Zhang Level: intermediate 1710c464158bSHong Zhang 1711c464158bSHong Zhang Notes: 1712c464158bSHong Zhang 1713c464158bSHong Zhang Specify the preallocated storage with either nz or nnz (not both). 1714c464158bSHong Zhang Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 1715c464158bSHong Zhang allocation. For additional details, see the users manual chapter on 1716c464158bSHong Zhang matrices. 1717c464158bSHong Zhang 171849a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 171949a6f317SBarry Smith 1720c464158bSHong Zhang .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ() 1721c464158bSHong Zhang @*/ 1722be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 1723c464158bSHong Zhang { 1724dfbe8321SBarry Smith PetscErrorCode ierr; 1725c464158bSHong Zhang 1726c464158bSHong Zhang PetscFunctionBegin; 1727c464158bSHong Zhang ierr = MatCreate(comm,m,n,m,n,A);CHKERRQ(ierr); 1728c464158bSHong Zhang ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr); 1729*ab93d7beSBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 173049b5e25fSSatish Balay PetscFunctionReturn(0); 173149b5e25fSSatish Balay } 173249b5e25fSSatish Balay 17334a2ae208SSatish Balay #undef __FUNCT__ 17344a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ" 1735dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 173649b5e25fSSatish Balay { 173749b5e25fSSatish Balay Mat C; 173849b5e25fSSatish Balay Mat_SeqSBAIJ *c,*a = (Mat_SeqSBAIJ*)A->data; 17396849ba73SBarry Smith PetscErrorCode ierr; 174013f74950SBarry Smith PetscInt i,len,mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 174149b5e25fSSatish Balay 174249b5e25fSSatish Balay PetscFunctionBegin; 174329bbc08cSBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 174449b5e25fSSatish Balay 174549b5e25fSSatish Balay *B = 0; 1746692f9cbeSHong Zhang ierr = MatCreate(A->comm,A->m,A->n,A->m,A->n,&C);CHKERRQ(ierr); 1747be5d1d56SKris Buschelman ierr = MatSetType(C,A->type_name);CHKERRQ(ierr); 17481d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1749692f9cbeSHong Zhang c = (Mat_SeqSBAIJ*)C->data; 1750692f9cbeSHong Zhang 1751273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 175249b5e25fSSatish Balay C->factor = A->factor; 175349b5e25fSSatish Balay c->row = 0; 175449b5e25fSSatish Balay c->icol = 0; 175549b5e25fSSatish Balay c->saved_values = 0; 175649b5e25fSSatish Balay c->keepzeroedrows = a->keepzeroedrows; 175749b5e25fSSatish Balay C->assembled = PETSC_TRUE; 175849b5e25fSSatish Balay 175982327fa8SHong Zhang C->M = A->M; 176082327fa8SHong Zhang C->N = A->N; 1761521d7252SBarry Smith C->bs = A->bs; 176249b5e25fSSatish Balay c->bs2 = a->bs2; 176349b5e25fSSatish Balay c->mbs = a->mbs; 176449b5e25fSSatish Balay c->nbs = a->nbs; 176549b5e25fSSatish Balay 176613f74950SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->imax);CHKERRQ(ierr); 176713f74950SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->ilen);CHKERRQ(ierr); 176849b5e25fSSatish Balay for (i=0; i<mbs; i++) { 176949b5e25fSSatish Balay c->imax[i] = a->imax[i]; 177049b5e25fSSatish Balay c->ilen[i] = a->ilen[i]; 177149b5e25fSSatish Balay } 177249b5e25fSSatish Balay 177349b5e25fSSatish Balay /* allocate the matrix space */ 1774a96a251dSBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr); 177549b5e25fSSatish Balay c->singlemalloc = PETSC_TRUE; 177613f74950SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 177749b5e25fSSatish Balay if (mbs > 0) { 177813f74950SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 177949b5e25fSSatish Balay if (cpvalues == MAT_COPY_VALUES) { 178049b5e25fSSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 178149b5e25fSSatish Balay } else { 178249b5e25fSSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 178349b5e25fSSatish Balay } 178449b5e25fSSatish Balay } 178549b5e25fSSatish Balay 178652e6d16bSBarry Smith ierr = PetscLogObjectMemory(C,len+2*(mbs+1)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ));CHKERRQ(ierr); 178749b5e25fSSatish Balay c->sorted = a->sorted; 178849b5e25fSSatish Balay c->roworiented = a->roworiented; 178949b5e25fSSatish Balay c->nonew = a->nonew; 179049b5e25fSSatish Balay 179149b5e25fSSatish Balay if (a->diag) { 179213f74950SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr); 179352e6d16bSBarry Smith ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 179449b5e25fSSatish Balay for (i=0; i<mbs; i++) { 179549b5e25fSSatish Balay c->diag[i] = a->diag[i]; 179649b5e25fSSatish Balay } 179749b5e25fSSatish Balay } else c->diag = 0; 17986c6c5352SBarry Smith c->nz = a->nz; 17996c6c5352SBarry Smith c->maxnz = a->maxnz; 180049b5e25fSSatish Balay c->solve_work = 0; 180149b5e25fSSatish Balay c->mult_work = 0; 180249b5e25fSSatish Balay *B = C; 1803b0a32e0cSBarry Smith ierr = PetscFListDuplicate(A->qlist,&C->qlist);CHKERRQ(ierr); 180449b5e25fSSatish Balay PetscFunctionReturn(0); 180549b5e25fSSatish Balay } 180649b5e25fSSatish Balay 18074a2ae208SSatish Balay #undef __FUNCT__ 18084a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqSBAIJ" 1809dfbe8321SBarry Smith PetscErrorCode MatLoad_SeqSBAIJ(PetscViewer viewer,const MatType type,Mat *A) 181049b5e25fSSatish Balay { 181149b5e25fSSatish Balay Mat_SeqSBAIJ *a; 181249b5e25fSSatish Balay Mat B; 18136849ba73SBarry Smith PetscErrorCode ierr; 181413f74950SBarry Smith int fd; 181513f74950SBarry Smith PetscMPIInt size; 181613f74950SBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 181713f74950SBarry Smith PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount; 181813f74950SBarry Smith PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows; 181913f74950SBarry Smith PetscInt *masked,nmask,tmp,bs2,ishift; 182087828ca2SBarry Smith PetscScalar *aa; 182149b5e25fSSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 182249b5e25fSSatish Balay 182349b5e25fSSatish Balay PetscFunctionBegin; 1824b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 182549b5e25fSSatish Balay bs2 = bs*bs; 182649b5e25fSSatish Balay 182749b5e25fSSatish Balay ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 182829bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 1829b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 183049b5e25fSSatish Balay ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 1831552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 183249b5e25fSSatish Balay M = header[1]; N = header[2]; nz = header[3]; 183349b5e25fSSatish Balay 183449b5e25fSSatish Balay if (header[3] < 0) { 183529bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ"); 183649b5e25fSSatish Balay } 183749b5e25fSSatish Balay 183829bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 183949b5e25fSSatish Balay 184049b5e25fSSatish Balay /* 184149b5e25fSSatish Balay This code adds extra rows to make sure the number of rows is 184249b5e25fSSatish Balay divisible by the blocksize 184349b5e25fSSatish Balay */ 184449b5e25fSSatish Balay mbs = M/bs; 184549b5e25fSSatish Balay extra_rows = bs - M + bs*(mbs); 184649b5e25fSSatish Balay if (extra_rows == bs) extra_rows = 0; 184749b5e25fSSatish Balay else mbs++; 184849b5e25fSSatish Balay if (extra_rows) { 184963ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_SeqSBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 185049b5e25fSSatish Balay } 185149b5e25fSSatish Balay 185249b5e25fSSatish Balay /* read in row lengths */ 185313f74950SBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 185449b5e25fSSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 185549b5e25fSSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 185649b5e25fSSatish Balay 185749b5e25fSSatish Balay /* read in column indices */ 185813f74950SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr); 185949b5e25fSSatish Balay ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 186049b5e25fSSatish Balay for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 186149b5e25fSSatish Balay 186249b5e25fSSatish Balay /* loop over row lengths determining block row lengths */ 186313f74950SBarry Smith ierr = PetscMalloc(mbs*sizeof(PetscInt),&s_browlengths);CHKERRQ(ierr); 186413f74950SBarry Smith ierr = PetscMemzero(s_browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr); 186513f74950SBarry Smith ierr = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 186613f74950SBarry Smith ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 186749b5e25fSSatish Balay masked = mask + mbs; 186849b5e25fSSatish Balay rowcount = 0; nzcount = 0; 186949b5e25fSSatish Balay for (i=0; i<mbs; i++) { 187049b5e25fSSatish Balay nmask = 0; 187149b5e25fSSatish Balay for (j=0; j<bs; j++) { 187249b5e25fSSatish Balay kmax = rowlengths[rowcount]; 187349b5e25fSSatish Balay for (k=0; k<kmax; k++) { 18742d703238SHong Zhang tmp = jj[nzcount++]/bs; /* block col. index */ 187503630b6eSHong Zhang if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;} 187649b5e25fSSatish Balay } 187749b5e25fSSatish Balay rowcount++; 187849b5e25fSSatish Balay } 1879574b2666SHong Zhang s_browlengths[i] += nmask; 1880574b2666SHong Zhang 188149b5e25fSSatish Balay /* zero out the mask elements we set */ 188249b5e25fSSatish Balay for (j=0; j<nmask; j++) mask[masked[j]] = 0; 188349b5e25fSSatish Balay } 188449b5e25fSSatish Balay 188549b5e25fSSatish Balay /* create our matrix */ 18869abb65ffSKris Buschelman ierr = MatCreate(comm,M+extra_rows,N+extra_rows,M+extra_rows,N+extra_rows,&B);CHKERRQ(ierr); 18879abb65ffSKris Buschelman ierr = MatSetType(B,type);CHKERRQ(ierr); 1888*ab93d7beSBarry Smith ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(B,bs,0,s_browlengths);CHKERRQ(ierr); 188949b5e25fSSatish Balay a = (Mat_SeqSBAIJ*)B->data; 189049b5e25fSSatish Balay 189149b5e25fSSatish Balay /* set matrix "i" values */ 189249b5e25fSSatish Balay a->i[0] = 0; 189349b5e25fSSatish Balay for (i=1; i<= mbs; i++) { 1894574b2666SHong Zhang a->i[i] = a->i[i-1] + s_browlengths[i-1]; 1895574b2666SHong Zhang a->ilen[i-1] = s_browlengths[i-1]; 189649b5e25fSSatish Balay } 18976c6c5352SBarry Smith a->nz = a->i[mbs]; 189849b5e25fSSatish Balay 189949b5e25fSSatish Balay /* read in nonzero values */ 190087828ca2SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 190149b5e25fSSatish Balay ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 190249b5e25fSSatish Balay for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 190349b5e25fSSatish Balay 190449b5e25fSSatish Balay /* set "a" and "j" values into matrix */ 190549b5e25fSSatish Balay nzcount = 0; jcount = 0; 190649b5e25fSSatish Balay for (i=0; i<mbs; i++) { 190749b5e25fSSatish Balay nzcountb = nzcount; 190849b5e25fSSatish Balay nmask = 0; 190949b5e25fSSatish Balay for (j=0; j<bs; j++) { 191049b5e25fSSatish Balay kmax = rowlengths[i*bs+j]; 191149b5e25fSSatish Balay for (k=0; k<kmax; k++) { 19122d703238SHong Zhang tmp = jj[nzcount++]/bs; /* block col. index */ 191303630b6eSHong Zhang if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;} 19142d703238SHong Zhang } 19152d703238SHong Zhang } 19162d703238SHong Zhang /* sort the masked values */ 19172d703238SHong Zhang ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 19182d703238SHong Zhang 19192d703238SHong Zhang /* set "j" values into matrix */ 19202d703238SHong Zhang maskcount = 1; 19212d703238SHong Zhang for (j=0; j<nmask; j++) { 192249b5e25fSSatish Balay a->j[jcount++] = masked[j]; 192349b5e25fSSatish Balay mask[masked[j]] = maskcount++; 192449b5e25fSSatish Balay } 1925574b2666SHong Zhang 192649b5e25fSSatish Balay /* set "a" values into matrix */ 192749b5e25fSSatish Balay ishift = bs2*a->i[i]; 192849b5e25fSSatish Balay for (j=0; j<bs; j++) { 192949b5e25fSSatish Balay kmax = rowlengths[i*bs+j]; 193049b5e25fSSatish Balay for (k=0; k<kmax; k++) { 1931574b2666SHong Zhang tmp = jj[nzcountb]/bs ; /* block col. index */ 1932574b2666SHong Zhang if (tmp >= i){ 193349b5e25fSSatish Balay block = mask[tmp] - 1; 193449b5e25fSSatish Balay point = jj[nzcountb] - bs*tmp; 193549b5e25fSSatish Balay idx = ishift + bs2*block + j + bs*point; 1936574b2666SHong Zhang a->a[idx] = aa[nzcountb]; 1937574b2666SHong Zhang } 1938574b2666SHong Zhang nzcountb++; 193949b5e25fSSatish Balay } 194049b5e25fSSatish Balay } 194149b5e25fSSatish Balay /* zero out the mask elements we set */ 194249b5e25fSSatish Balay for (j=0; j<nmask; j++) mask[masked[j]] = 0; 194349b5e25fSSatish Balay } 19446c6c5352SBarry Smith if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 194549b5e25fSSatish Balay 194649b5e25fSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 1947574b2666SHong Zhang ierr = PetscFree(s_browlengths);CHKERRQ(ierr); 194849b5e25fSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 194949b5e25fSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 195049b5e25fSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 195149b5e25fSSatish Balay 19529abb65ffSKris Buschelman ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 19539abb65ffSKris Buschelman ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 195449b5e25fSSatish Balay ierr = MatView_Private(B);CHKERRQ(ierr); 19559abb65ffSKris Buschelman *A = B; 195649b5e25fSSatish Balay PetscFunctionReturn(0); 195749b5e25fSSatish Balay } 1958574b2666SHong Zhang 1959d06b337dSHong Zhang #undef __FUNCT__ 1960d06b337dSHong Zhang #define __FUNCT__ "MatRelax_SeqSBAIJ" 196113f74950SBarry Smith PetscErrorCode MatRelax_SeqSBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1962d06b337dSHong Zhang { 1963d06b337dSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data; 1964d06b337dSHong Zhang MatScalar *aa=a->a,*v,*v1; 1965d06b337dSHong Zhang PetscScalar *x,*b,*t,sum,d; 19666849ba73SBarry Smith PetscErrorCode ierr; 1967521d7252SBarry Smith PetscInt m=a->mbs,bs=A->bs,*ai=a->i,*aj=a->j; 1968521d7252SBarry Smith PetscInt nz,nz1,*vj,*vj1,i; 1969d06b337dSHong Zhang 1970d06b337dSHong Zhang PetscFunctionBegin; 1971b965ef7fSBarry Smith its = its*lits; 197277431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 1973d06b337dSHong Zhang 1974d06b337dSHong Zhang if (bs > 1) 1975d06b337dSHong Zhang SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented"); 1976d06b337dSHong Zhang 19771ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1978d06b337dSHong Zhang if (xx != bb) { 19791ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 1980d06b337dSHong Zhang } else { 1981d06b337dSHong Zhang b = x; 1982d06b337dSHong Zhang } 1983d06b337dSHong Zhang 1984d06b337dSHong Zhang ierr = PetscMalloc(m*sizeof(PetscScalar),&t);CHKERRQ(ierr); 1985d06b337dSHong Zhang 1986d06b337dSHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 19872798e883SHong Zhang if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 1988d06b337dSHong Zhang for (i=0; i<m; i++) 1989d06b337dSHong Zhang t[i] = b[i]; 1990d06b337dSHong Zhang 1991d06b337dSHong Zhang for (i=0; i<m; i++){ 199244706875SHong Zhang d = *(aa + ai[i]); /* diag[i] */ 1993d06b337dSHong Zhang v = aa + ai[i] + 1; 1994d06b337dSHong Zhang vj = aj + ai[i] + 1; 1995d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 1996d06b337dSHong Zhang x[i] = omega*t[i]/d; 1997d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); /* update rhs */ 1998efee365bSSatish Balay ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr); 1999d06b337dSHong Zhang } 2000d06b337dSHong Zhang } 2001d06b337dSHong Zhang 20022798e883SHong Zhang if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 2003d06b337dSHong Zhang for (i=0; i<m; i++) 2004d06b337dSHong Zhang t[i] = b[i]; 2005d06b337dSHong Zhang 2006d06b337dSHong Zhang for (i=0; i<m-1; i++){ /* update rhs */ 2007d06b337dSHong Zhang v = aa + ai[i] + 1; 2008d06b337dSHong Zhang vj = aj + ai[i] + 1; 2009d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2010d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); 2011efee365bSSatish Balay ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr); 2012d06b337dSHong Zhang } 2013d06b337dSHong Zhang for (i=m-1; i>=0; i--){ 2014d06b337dSHong Zhang d = *(aa + ai[i]); 2015d06b337dSHong Zhang v = aa + ai[i] + 1; 2016d06b337dSHong Zhang vj = aj + ai[i] + 1; 2017d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2018d06b337dSHong Zhang sum = t[i]; 2019d06b337dSHong Zhang while (nz--) sum -= x[*vj++]*(*v++); 2020efee365bSSatish Balay ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr); 2021d06b337dSHong Zhang x[i] = (1-omega)*x[i] + omega*sum/d; 2022d06b337dSHong Zhang } 2023d06b337dSHong Zhang } 2024d06b337dSHong Zhang its--; 2025d06b337dSHong Zhang } 2026d06b337dSHong Zhang 2027d06b337dSHong Zhang while (its--) { 202844706875SHong Zhang /* 202944706875SHong Zhang forward sweep: 203044706875SHong Zhang for i=0,...,m-1: 203144706875SHong Zhang sum[i] = (b[i] - U(i,:)x )/d[i]; 203244706875SHong Zhang x[i] = (1-omega)x[i] + omega*sum[i]; 203344706875SHong Zhang b = b - x[i]*U^T(i,:); 2034d06b337dSHong Zhang 203544706875SHong Zhang */ 20362798e883SHong Zhang if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 2037d06b337dSHong Zhang for (i=0; i<m; i++) 2038d06b337dSHong Zhang t[i] = b[i]; 2039d06b337dSHong Zhang 2040d06b337dSHong Zhang for (i=0; i<m; i++){ 204144706875SHong Zhang d = *(aa + ai[i]); /* diag[i] */ 2042d06b337dSHong Zhang v = aa + ai[i] + 1; v1=v; 2043d06b337dSHong Zhang vj = aj + ai[i] + 1; vj1=vj; 2044d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; nz1=nz; 2045d06b337dSHong Zhang sum = t[i]; 2046d06b337dSHong Zhang while (nz1--) sum -= (*v1++)*x[*vj1++]; 2047d06b337dSHong Zhang x[i] = (1-omega)*x[i] + omega*sum/d; 2048d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); 2049efee365bSSatish Balay ierr = PetscLogFlops(4*nz-2);CHKERRQ(ierr); 2050d06b337dSHong Zhang } 2051d06b337dSHong Zhang } 2052d06b337dSHong Zhang 20532798e883SHong Zhang if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 205444706875SHong Zhang /* 205544706875SHong Zhang backward sweep: 205644706875SHong Zhang b = b - x[i]*U^T(i,:), i=0,...,n-2 205744706875SHong Zhang for i=m-1,...,0: 205844706875SHong Zhang sum[i] = (b[i] - U(i,:)x )/d[i]; 205944706875SHong Zhang x[i] = (1-omega)x[i] + omega*sum[i]; 206044706875SHong Zhang */ 2061d06b337dSHong Zhang for (i=0; i<m; i++) 2062d06b337dSHong Zhang t[i] = b[i]; 2063d06b337dSHong Zhang 2064d06b337dSHong Zhang for (i=0; i<m-1; i++){ /* update rhs */ 2065d06b337dSHong Zhang v = aa + ai[i] + 1; 2066d06b337dSHong Zhang vj = aj + ai[i] + 1; 2067d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2068d06b337dSHong Zhang while (nz--) t[*vj++] -= x[i]*(*v++); 2069efee365bSSatish Balay ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr); 2070d06b337dSHong Zhang } 2071d06b337dSHong Zhang for (i=m-1; i>=0; i--){ 2072d06b337dSHong Zhang d = *(aa + ai[i]); 2073d06b337dSHong Zhang v = aa + ai[i] + 1; 2074d06b337dSHong Zhang vj = aj + ai[i] + 1; 2075d06b337dSHong Zhang nz = ai[i+1] - ai[i] - 1; 2076d06b337dSHong Zhang sum = t[i]; 2077d06b337dSHong Zhang while (nz--) sum -= x[*vj++]*(*v++); 2078efee365bSSatish Balay ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr); 2079d06b337dSHong Zhang x[i] = (1-omega)*x[i] + omega*sum/d; 2080d06b337dSHong Zhang } 2081d06b337dSHong Zhang } 2082d06b337dSHong Zhang } 2083d06b337dSHong Zhang 2084d06b337dSHong Zhang ierr = PetscFree(t);CHKERRQ(ierr); 20851ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2086d06b337dSHong Zhang if (bb != xx) { 20871ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 2088d06b337dSHong Zhang } 2089d06b337dSHong Zhang PetscFunctionReturn(0); 2090d06b337dSHong Zhang } 2091d06b337dSHong Zhang 2092d06b337dSHong Zhang 2093d06b337dSHong Zhang 2094d06b337dSHong Zhang 209549b5e25fSSatish Balay 209649b5e25fSSatish Balay 2097