xref: /petsc/src/mat/impls/sbaij/seq/sbaij.c (revision ab93d7be622546495d84e7c23b06d6fbd0ced02d)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
249b5e25fSSatish Balay 
349b5e25fSSatish Balay /*
4a1373b80SHong Zhang     Defines the basic matrix operations for the SBAIJ (compressed row)
549b5e25fSSatish Balay   matrix storage format.
649b5e25fSSatish Balay */
79e070d67SMatthew Knepley #include "src/mat/impls/baij/seq/baij.h"         /*I "petscmat.h" I*/
849b5e25fSSatish Balay #include "src/inline/spops.h"
9aec82049SSatish Balay #include "src/mat/impls/sbaij/seq/sbaij.h"
1049b5e25fSSatish Balay 
1149b5e25fSSatish Balay #define CHUNKSIZE  10
1249b5e25fSSatish Balay 
1349b5e25fSSatish Balay /*
1449b5e25fSSatish Balay      Checks for missing diagonals
1549b5e25fSSatish Balay */
164a2ae208SSatish Balay #undef __FUNCT__
174a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqSBAIJ"
18dfbe8321SBarry Smith PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A)
1949b5e25fSSatish Balay {
20045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
216849ba73SBarry Smith   PetscErrorCode ierr;
2213f74950SBarry Smith   PetscInt       *diag,*jj = a->j,i;
2349b5e25fSSatish Balay 
2449b5e25fSSatish Balay   PetscFunctionBegin;
25045c9aa0SHong Zhang   ierr = MatMarkDiagonal_SeqSBAIJ(A);CHKERRQ(ierr);
2649b5e25fSSatish Balay   diag = a->diag;
2749b5e25fSSatish Balay   for (i=0; i<a->mbs; i++) {
2877431f27SBarry Smith     if (jj[diag[i]] != i) SETERRQ1(PETSC_ERR_ARG_CORRUPT,"Matrix is missing diagonal number %D",i);
2949b5e25fSSatish Balay   }
3049b5e25fSSatish Balay   PetscFunctionReturn(0);
3149b5e25fSSatish Balay }
3249b5e25fSSatish Balay 
334a2ae208SSatish Balay #undef __FUNCT__
344a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqSBAIJ"
35dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A)
3649b5e25fSSatish Balay {
37045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
386849ba73SBarry Smith   PetscErrorCode ierr;
3913f74950SBarry Smith   PetscInt       i,mbs = a->mbs;
4049b5e25fSSatish Balay 
4149b5e25fSSatish Balay   PetscFunctionBegin;
4249b5e25fSSatish Balay   if (a->diag) PetscFunctionReturn(0);
4349b5e25fSSatish Balay 
4413f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
4552e6d16bSBarry Smith   ierr = PetscLogObjectMemory(A,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
46b424e231SHong Zhang   for (i=0; i<mbs; i++) a->diag[i] = a->i[i];
4749b5e25fSSatish Balay   PetscFunctionReturn(0);
4849b5e25fSSatish Balay }
4949b5e25fSSatish Balay 
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqSBAIJ"
5213f74950SBarry Smith static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
5349b5e25fSSatish Balay {
54a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
5513f74950SBarry Smith   PetscInt     n = a->mbs,i;
5649b5e25fSSatish Balay 
5749b5e25fSSatish Balay   PetscFunctionBegin;
58d3e5a4abSHong Zhang   *nn = n;
59a1373b80SHong Zhang   if (!ia) PetscFunctionReturn(0);
60a1373b80SHong Zhang 
61a6ece127SHong Zhang   if (oshift == 1) {
62a6ece127SHong Zhang     /* temporarily add 1 to i and j indices */
6313f74950SBarry Smith     PetscInt nz = a->i[n];
646c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]++;
65a1373b80SHong Zhang     for (i=0; i<n+1; i++) a->i[i]++;
66a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
67a1373b80SHong Zhang   } else {
68a1373b80SHong Zhang     *ia = a->i; *ja = a->j;
69a6ece127SHong Zhang   }
7049b5e25fSSatish Balay   PetscFunctionReturn(0);
7149b5e25fSSatish Balay }
7249b5e25fSSatish Balay 
734a2ae208SSatish Balay #undef __FUNCT__
744a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqSBAIJ"
7513f74950SBarry Smith static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
7649b5e25fSSatish Balay {
77b7aaefc3SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
7813f74950SBarry Smith   PetscInt     i,n = a->mbs;
79a6ece127SHong Zhang 
8049b5e25fSSatish Balay   PetscFunctionBegin;
8149b5e25fSSatish Balay   if (!ia) PetscFunctionReturn(0);
82a6ece127SHong Zhang 
83a6ece127SHong Zhang   if (oshift == 1) {
8413f74950SBarry Smith     PetscInt nz = a->i[n]-1;
856c6c5352SBarry Smith     for (i=0; i<nz; i++) a->j[i]--;
86a6ece127SHong Zhang     for (i=0; i<n+1; i++) a->i[i]--;
87a6ece127SHong Zhang   }
88a6ece127SHong Zhang   PetscFunctionReturn(0);
8949b5e25fSSatish Balay }
9049b5e25fSSatish Balay 
914a2ae208SSatish Balay #undef __FUNCT__
924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqSBAIJ"
93dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
9449b5e25fSSatish Balay {
9549b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
96dfbe8321SBarry Smith   PetscErrorCode ierr;
9749b5e25fSSatish Balay 
9849b5e25fSSatish Balay   PetscFunctionBegin;
9977431f27SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, NZ=%D",A->m,a->nz);
10049b5e25fSSatish Balay   if (!a->singlemalloc) {
101*ab93d7beSBarry Smith     if (a->a) {ierr = PetscFree(a->a);CHKERRQ(ierr);}
102*ab93d7beSBarry Smith     if (a->i) {ierr = PetscFree(a->i);CHKERRQ(ierr);}
103*ab93d7beSBarry Smith     if (a->j) {ierr = PetscFree(a->j);CHKERRQ(ierr);}
104a96a251dSBarry Smith   } else {
105a96a251dSBarry Smith     ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr);
10649b5e25fSSatish Balay   }
10749b5e25fSSatish Balay   if (a->row) {
10849b5e25fSSatish Balay     ierr = ISDestroy(a->row);CHKERRQ(ierr);
10949b5e25fSSatish Balay   }
11049b5e25fSSatish Balay   if (a->diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
111*ab93d7beSBarry Smith   if (a->imax) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);}
11249b5e25fSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
113d59c15a7SBarry Smith   if (a->solve_work)  {ierr = PetscFree(a->solve_work);CHKERRQ(ierr);}
114d59c15a7SBarry Smith   if (a->solves_work) {ierr = PetscFree(a->solves_work);CHKERRQ(ierr);}
115d59c15a7SBarry Smith   if (a->mult_work)   {ierr = PetscFree(a->mult_work);CHKERRQ(ierr);}
11649b5e25fSSatish Balay   if (a->saved_values) {ierr = PetscFree(a->saved_values);CHKERRQ(ierr);}
117c4319e64SHong Zhang   if (a->xtoy) {ierr = PetscFree(a->xtoy);CHKERRQ(ierr);}
1181a3463dfSHong Zhang 
1191a3463dfSHong Zhang   if (a->inew){
1201a3463dfSHong Zhang     ierr = PetscFree(a->inew);CHKERRQ(ierr);
1211a3463dfSHong Zhang     a->inew = 0;
1221a3463dfSHong Zhang   }
12349b5e25fSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
124901853e0SKris Buschelman 
125901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
126901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsbaij_seqbaij_C","",PETSC_NULL);CHKERRQ(ierr);
130901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
13149b5e25fSSatish Balay   PetscFunctionReturn(0);
13249b5e25fSSatish Balay }
13349b5e25fSSatish Balay 
1344a2ae208SSatish Balay #undef __FUNCT__
1354a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqSBAIJ"
136dfbe8321SBarry Smith PetscErrorCode MatSetOption_SeqSBAIJ(Mat A,MatOption op)
13749b5e25fSSatish Balay {
138045c9aa0SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
13963ba0a88SBarry Smith   PetscErrorCode ierr;
14049b5e25fSSatish Balay 
14149b5e25fSSatish Balay   PetscFunctionBegin;
1424d9d31abSKris Buschelman   switch (op) {
1434d9d31abSKris Buschelman   case MAT_ROW_ORIENTED:
1444d9d31abSKris Buschelman     a->roworiented = PETSC_TRUE;
1454d9d31abSKris Buschelman     break;
1464d9d31abSKris Buschelman   case MAT_COLUMN_ORIENTED:
1474d9d31abSKris Buschelman     a->roworiented = PETSC_FALSE;
1484d9d31abSKris Buschelman     break;
1494d9d31abSKris Buschelman   case MAT_COLUMNS_SORTED:
1504d9d31abSKris Buschelman     a->sorted = PETSC_TRUE;
1514d9d31abSKris Buschelman     break;
1524d9d31abSKris Buschelman   case MAT_COLUMNS_UNSORTED:
1534d9d31abSKris Buschelman     a->sorted = PETSC_FALSE;
1544d9d31abSKris Buschelman     break;
1554d9d31abSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
1564d9d31abSKris Buschelman     a->keepzeroedrows = PETSC_TRUE;
1574d9d31abSKris Buschelman     break;
1584d9d31abSKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1594d9d31abSKris Buschelman     a->nonew = 1;
1604d9d31abSKris Buschelman     break;
1614d9d31abSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1624d9d31abSKris Buschelman     a->nonew = -1;
1634d9d31abSKris Buschelman     break;
1644d9d31abSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
1654d9d31abSKris Buschelman     a->nonew = -2;
1664d9d31abSKris Buschelman     break;
1674d9d31abSKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1684d9d31abSKris Buschelman     a->nonew = 0;
1694d9d31abSKris Buschelman     break;
1704d9d31abSKris Buschelman   case MAT_ROWS_SORTED:
1714d9d31abSKris Buschelman   case MAT_ROWS_UNSORTED:
1724d9d31abSKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1734d9d31abSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1744d9d31abSKris Buschelman   case MAT_USE_HASH_TABLE:
17563ba0a88SBarry Smith     ierr = PetscLogInfo((A,"MatSetOption_SeqSBAIJ:Option ignored\n"));CHKERRQ(ierr);
1764d9d31abSKris Buschelman     break;
1774d9d31abSKris Buschelman   case MAT_NO_NEW_DIAGONALS:
17829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
1799a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
1809a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
1819a4540c5SBarry Smith   case MAT_HERMITIAN:
1829a4540c5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matrix must be symmetric");
18377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
18477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1859a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
1869a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1879a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
188941593c8SHong Zhang   case MAT_IGNORE_LOWER_TRIANGULAR:
189941593c8SHong Zhang     a->ignore_ltriangular = PETSC_TRUE;
190941593c8SHong Zhang     break;
191941593c8SHong Zhang   case MAT_ERROR_LOWER_TRIANGULAR:
192941593c8SHong Zhang     a->ignore_ltriangular = PETSC_FALSE;
19377e54ba9SKris Buschelman     break;
1944d9d31abSKris Buschelman   default:
19529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
19649b5e25fSSatish Balay   }
19749b5e25fSSatish Balay   PetscFunctionReturn(0);
19849b5e25fSSatish Balay }
19949b5e25fSSatish Balay 
2004a2ae208SSatish Balay #undef __FUNCT__
2014a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqSBAIJ"
20213f74950SBarry Smith PetscErrorCode MatGetRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **v)
20349b5e25fSSatish Balay {
20449b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
2056849ba73SBarry Smith   PetscErrorCode ierr;
20613f74950SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*cols_i,bs2;
20749b5e25fSSatish Balay   MatScalar      *aa,*aa_i;
20887828ca2SBarry Smith   PetscScalar    *v_i;
20949b5e25fSSatish Balay 
21049b5e25fSSatish Balay   PetscFunctionBegin;
211521d7252SBarry Smith   bs  = A->bs;
21249b5e25fSSatish Balay   ai  = a->i;
21349b5e25fSSatish Balay   aj  = a->j;
21449b5e25fSSatish Balay   aa  = a->a;
21549b5e25fSSatish Balay   bs2 = a->bs2;
21649b5e25fSSatish Balay 
21777431f27SBarry Smith   if (row < 0 || row >= A->m) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "Row %D out of range", row);
21849b5e25fSSatish Balay 
21949b5e25fSSatish Balay   bn  = row/bs;   /* Block number */
22049b5e25fSSatish Balay   bp  = row % bs; /* Block position */
22149b5e25fSSatish Balay   M   = ai[bn+1] - ai[bn];
22249b5e25fSSatish Balay   *ncols = bs*M;
22349b5e25fSSatish Balay 
22449b5e25fSSatish Balay   if (v) {
22549b5e25fSSatish Balay     *v = 0;
22649b5e25fSSatish Balay     if (*ncols) {
22787828ca2SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscScalar),v);CHKERRQ(ierr);
22849b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
22949b5e25fSSatish Balay         v_i  = *v + i*bs;
23049b5e25fSSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
23149b5e25fSSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
23249b5e25fSSatish Balay       }
23349b5e25fSSatish Balay     }
23449b5e25fSSatish Balay   }
23549b5e25fSSatish Balay 
23649b5e25fSSatish Balay   if (cols) {
23749b5e25fSSatish Balay     *cols = 0;
23849b5e25fSSatish Balay     if (*ncols) {
23913f74950SBarry Smith       ierr = PetscMalloc((*ncols+row)*sizeof(PetscInt),cols);CHKERRQ(ierr);
24049b5e25fSSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
24149b5e25fSSatish Balay         cols_i = *cols + i*bs;
24249b5e25fSSatish Balay         itmp  = bs*aj[ai[bn] + i];
24349b5e25fSSatish Balay         for (j=0; j<bs; j++) {cols_i[j] = itmp++;}
24449b5e25fSSatish Balay       }
24549b5e25fSSatish Balay     }
24649b5e25fSSatish Balay   }
24749b5e25fSSatish Balay 
24849b5e25fSSatish Balay   /*search column A(0:row-1,row) (=A(row,0:row-1)). Could be expensive! */
2495ddb2528SHong Zhang   /* this segment is currently removed, so only entries in the upper triangle are obtained */
2505ddb2528SHong Zhang #ifdef column_search
25149b5e25fSSatish Balay   v_i    = *v    + M*bs;
25249b5e25fSSatish Balay   cols_i = *cols + M*bs;
25349b5e25fSSatish Balay   for (i=0; i<bn; i++){ /* for each block row */
25449b5e25fSSatish Balay     M = ai[i+1] - ai[i];
25549b5e25fSSatish Balay     for (j=0; j<M; j++){
25649b5e25fSSatish Balay       itmp = aj[ai[i] + j];    /* block column value */
25749b5e25fSSatish Balay       if (itmp == bn){
25849b5e25fSSatish Balay         aa_i   = aa    + bs2*(ai[i] + j) + bs*bp;
25949b5e25fSSatish Balay         for (k=0; k<bs; k++) {
26049b5e25fSSatish Balay           *cols_i++ = i*bs+k;
26149b5e25fSSatish Balay           *v_i++    = aa_i[k];
26249b5e25fSSatish Balay         }
26349b5e25fSSatish Balay         *ncols += bs;
26449b5e25fSSatish Balay         break;
26549b5e25fSSatish Balay       }
26649b5e25fSSatish Balay     }
26749b5e25fSSatish Balay   }
2685ddb2528SHong Zhang #endif
26949b5e25fSSatish Balay   PetscFunctionReturn(0);
27049b5e25fSSatish Balay }
27149b5e25fSSatish Balay 
2724a2ae208SSatish Balay #undef __FUNCT__
2734a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqSBAIJ"
27413f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
27549b5e25fSSatish Balay {
276dfbe8321SBarry Smith   PetscErrorCode ierr;
27749b5e25fSSatish Balay 
27849b5e25fSSatish Balay   PetscFunctionBegin;
27949b5e25fSSatish Balay   if (idx) {if (*idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}}
28049b5e25fSSatish Balay   if (v)   {if (*v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}}
28149b5e25fSSatish Balay   PetscFunctionReturn(0);
28249b5e25fSSatish Balay }
28349b5e25fSSatish Balay 
2844a2ae208SSatish Balay #undef __FUNCT__
2854a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqSBAIJ"
286dfbe8321SBarry Smith PetscErrorCode MatTranspose_SeqSBAIJ(Mat A,Mat *B)
28749b5e25fSSatish Balay {
288dfbe8321SBarry Smith   PetscErrorCode ierr;
28949b5e25fSSatish Balay   PetscFunctionBegin;
290999d9058SBarry Smith   ierr = MatDuplicate(A,MAT_COPY_VALUES,B);CHKERRQ(ierr);
2918115998fSBarry Smith   PetscFunctionReturn(0);
29249b5e25fSSatish Balay }
29349b5e25fSSatish Balay 
2944a2ae208SSatish Balay #undef __FUNCT__
2954a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_ASCII"
2966849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A,PetscViewer viewer)
29749b5e25fSSatish Balay {
29849b5e25fSSatish Balay   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ*)A->data;
299dfbe8321SBarry Smith   PetscErrorCode    ierr;
300521d7252SBarry Smith   PetscInt          i,j,bs = A->bs,k,l,bs2=a->bs2;
301fb9695e5SSatish Balay   char              *name;
302f3ef73ceSBarry Smith   PetscViewerFormat format;
30349b5e25fSSatish Balay 
30449b5e25fSSatish Balay   PetscFunctionBegin;
30580fe4e49SBarry Smith   ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
306b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
307456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
30877431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
309fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
31029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Matlab format not supported");
311fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
312b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
31349b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
31449b5e25fSSatish Balay       for (j=0; j<bs; j++) {
31577431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
31649b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
31749b5e25fSSatish Balay           for (l=0; l<bs; l++) {
31849b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
31949b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
32077431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
32149b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
32249b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
32377431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
32449b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
32549b5e25fSSatish Balay             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
32677431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
32749b5e25fSSatish Balay             }
32849b5e25fSSatish Balay #else
32949b5e25fSSatish Balay             if (a->a[bs2*k + l*bs + j] != 0.0) {
33077431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
33149b5e25fSSatish Balay             }
33249b5e25fSSatish Balay #endif
33349b5e25fSSatish Balay           }
33449b5e25fSSatish Balay         }
335b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
33649b5e25fSSatish Balay       }
33749b5e25fSSatish Balay     }
338b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
33949b5e25fSSatish Balay   } else {
340b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
34149b5e25fSSatish Balay     for (i=0; i<a->mbs; i++) {
34249b5e25fSSatish Balay       for (j=0; j<bs; j++) {
34377431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
34449b5e25fSSatish Balay         for (k=a->i[i]; k<a->i[i+1]; k++) {
34549b5e25fSSatish Balay           for (l=0; l<bs; l++) {
34649b5e25fSSatish Balay #if defined(PETSC_USE_COMPLEX)
34749b5e25fSSatish Balay             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
34877431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
34949b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
35049b5e25fSSatish Balay             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
35177431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
35249b5e25fSSatish Balay                                             PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
35349b5e25fSSatish Balay             } else {
35477431f27SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
35549b5e25fSSatish Balay             }
35649b5e25fSSatish Balay #else
35777431f27SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," %D %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
35849b5e25fSSatish Balay #endif
35949b5e25fSSatish Balay           }
36049b5e25fSSatish Balay         }
361b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
36249b5e25fSSatish Balay       }
36349b5e25fSSatish Balay     }
364b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
36549b5e25fSSatish Balay   }
366b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
36749b5e25fSSatish Balay   PetscFunctionReturn(0);
36849b5e25fSSatish Balay }
36949b5e25fSSatish Balay 
3704a2ae208SSatish Balay #undef __FUNCT__
3714a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw_Zoom"
3726849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
37349b5e25fSSatish Balay {
37449b5e25fSSatish Balay   Mat            A = (Mat) Aa;
37549b5e25fSSatish Balay   Mat_SeqSBAIJ   *a=(Mat_SeqSBAIJ*)A->data;
3766849ba73SBarry Smith   PetscErrorCode ierr;
37713f74950SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->bs,bs2=a->bs2;
37813f74950SBarry Smith   PetscMPIInt    rank;
37949b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
38049b5e25fSSatish Balay   MatScalar      *aa;
38149b5e25fSSatish Balay   MPI_Comm       comm;
382b0a32e0cSBarry Smith   PetscViewer    viewer;
38349b5e25fSSatish Balay 
38449b5e25fSSatish Balay   PetscFunctionBegin;
38549b5e25fSSatish Balay   /*
38649b5e25fSSatish Balay     This is nasty. If this is called from an originally parallel matrix
38749b5e25fSSatish Balay     then all processes call this,but only the first has the matrix so the
38849b5e25fSSatish Balay     rest should return immediately.
38949b5e25fSSatish Balay   */
39049b5e25fSSatish Balay   ierr = PetscObjectGetComm((PetscObject)draw,&comm);CHKERRQ(ierr);
39149b5e25fSSatish Balay   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
39249b5e25fSSatish Balay   if (rank) PetscFunctionReturn(0);
39349b5e25fSSatish Balay 
39449b5e25fSSatish Balay   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
39549b5e25fSSatish Balay 
396b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
397b0a32e0cSBarry Smith   PetscDrawString(draw, .3*(xl+xr), .3*(yl+yr), PETSC_DRAW_BLACK, "symmetric");
39849b5e25fSSatish Balay 
39949b5e25fSSatish Balay   /* loop over matrix elements drawing boxes */
400b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
40149b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
40249b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
403c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
40449b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
40549b5e25fSSatish Balay       aa = a->a + j*bs2;
40649b5e25fSSatish Balay       for (k=0; k<bs; k++) {
40749b5e25fSSatish Balay         for (l=0; l<bs; l++) {
40849b5e25fSSatish Balay           if (PetscRealPart(*aa++) >=  0.) continue;
409b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
41049b5e25fSSatish Balay         }
41149b5e25fSSatish Balay       }
41249b5e25fSSatish Balay     }
41349b5e25fSSatish Balay   }
414b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
41549b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
41649b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
417c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
41849b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
41949b5e25fSSatish Balay       aa = a->a + j*bs2;
42049b5e25fSSatish Balay       for (k=0; k<bs; k++) {
42149b5e25fSSatish Balay         for (l=0; l<bs; l++) {
42249b5e25fSSatish Balay           if (PetscRealPart(*aa++) != 0.) continue;
423b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
42449b5e25fSSatish Balay         }
42549b5e25fSSatish Balay       }
42649b5e25fSSatish Balay     }
42749b5e25fSSatish Balay   }
42849b5e25fSSatish Balay 
429b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
43049b5e25fSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
43149b5e25fSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
432c464158bSHong Zhang       y_l = A->m - row - 1.0; y_r = y_l + 1.0;
43349b5e25fSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
43449b5e25fSSatish Balay       aa = a->a + j*bs2;
43549b5e25fSSatish Balay       for (k=0; k<bs; k++) {
43649b5e25fSSatish Balay         for (l=0; l<bs; l++) {
43749b5e25fSSatish Balay           if (PetscRealPart(*aa++) <= 0.) continue;
438b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
43949b5e25fSSatish Balay         }
44049b5e25fSSatish Balay       }
44149b5e25fSSatish Balay     }
44249b5e25fSSatish Balay   }
44349b5e25fSSatish Balay   PetscFunctionReturn(0);
44449b5e25fSSatish Balay }
44549b5e25fSSatish Balay 
4464a2ae208SSatish Balay #undef __FUNCT__
4474a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ_Draw"
4486849ba73SBarry Smith static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A,PetscViewer viewer)
44949b5e25fSSatish Balay {
450dfbe8321SBarry Smith   PetscErrorCode ierr;
45149b5e25fSSatish Balay   PetscReal      xl,yl,xr,yr,w,h;
452b0a32e0cSBarry Smith   PetscDraw      draw;
45349b5e25fSSatish Balay   PetscTruth     isnull;
45449b5e25fSSatish Balay 
45549b5e25fSSatish Balay   PetscFunctionBegin;
45649b5e25fSSatish Balay 
457b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
458b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
45949b5e25fSSatish Balay 
46049b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
461c464158bSHong Zhang   xr  = A->m; yr = A->m; h = yr/10.0; w = xr/10.0;
46249b5e25fSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
463b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
464b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqSBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
46549b5e25fSSatish Balay   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
46649b5e25fSSatish Balay   PetscFunctionReturn(0);
46749b5e25fSSatish Balay }
46849b5e25fSSatish Balay 
4694a2ae208SSatish Balay #undef __FUNCT__
4704a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqSBAIJ"
471dfbe8321SBarry Smith PetscErrorCode MatView_SeqSBAIJ(Mat A,PetscViewer viewer)
47249b5e25fSSatish Balay {
473dfbe8321SBarry Smith   PetscErrorCode ierr;
47432077d6dSBarry Smith   PetscTruth     iascii,isdraw;
47549b5e25fSSatish Balay 
47649b5e25fSSatish Balay   PetscFunctionBegin;
47732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
478fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
47932077d6dSBarry Smith   if (iascii){
48049b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
48149b5e25fSSatish Balay   } else if (isdraw) {
48249b5e25fSSatish Balay     ierr = MatView_SeqSBAIJ_Draw(A,viewer);CHKERRQ(ierr);
48349b5e25fSSatish Balay   } else {
484a5e6ed63SBarry Smith     Mat B;
485ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
486a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
487a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
48849b5e25fSSatish Balay   }
48949b5e25fSSatish Balay   PetscFunctionReturn(0);
49049b5e25fSSatish Balay }
49149b5e25fSSatish Balay 
49249b5e25fSSatish Balay 
4934a2ae208SSatish Balay #undef __FUNCT__
4944a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqSBAIJ"
49513f74950SBarry Smith PetscErrorCode MatGetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
49649b5e25fSSatish Balay {
497045c9aa0SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
49813f74950SBarry Smith   PetscInt     *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
49913f74950SBarry Smith   PetscInt     *ai = a->i,*ailen = a->ilen;
50013f74950SBarry Smith   PetscInt     brow,bcol,ridx,cidx,bs=A->bs,bs2=a->bs2;
50149b5e25fSSatish Balay   MatScalar    *ap,*aa = a->a,zero = 0.0;
50249b5e25fSSatish Balay 
50349b5e25fSSatish Balay   PetscFunctionBegin;
50449b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
50549b5e25fSSatish Balay     row  = im[k]; brow = row/bs;
50677431f27SBarry Smith     if (row < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",row);
50777431f27SBarry Smith     if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->m-1);
50849b5e25fSSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
50949b5e25fSSatish Balay     nrow = ailen[brow];
51049b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
51177431f27SBarry Smith       if (in[l] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",in[l]);
51277431f27SBarry Smith       if (in[l] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->n-1);
51349b5e25fSSatish Balay       col  = in[l] ;
51449b5e25fSSatish Balay       bcol = col/bs;
51549b5e25fSSatish Balay       cidx = col%bs;
51649b5e25fSSatish Balay       ridx = row%bs;
51749b5e25fSSatish Balay       high = nrow;
51849b5e25fSSatish Balay       low  = 0; /* assume unsorted */
51949b5e25fSSatish Balay       while (high-low > 5) {
52049b5e25fSSatish Balay         t = (low+high)/2;
52149b5e25fSSatish Balay         if (rp[t] > bcol) high = t;
52249b5e25fSSatish Balay         else             low  = t;
52349b5e25fSSatish Balay       }
52449b5e25fSSatish Balay       for (i=low; i<high; i++) {
52549b5e25fSSatish Balay         if (rp[i] > bcol) break;
52649b5e25fSSatish Balay         if (rp[i] == bcol) {
52749b5e25fSSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
52849b5e25fSSatish Balay           goto finished;
52949b5e25fSSatish Balay         }
53049b5e25fSSatish Balay       }
53149b5e25fSSatish Balay       *v++ = zero;
53249b5e25fSSatish Balay        finished:;
53349b5e25fSSatish Balay     }
53449b5e25fSSatish Balay   }
53549b5e25fSSatish Balay   PetscFunctionReturn(0);
53649b5e25fSSatish Balay }
53749b5e25fSSatish Balay 
53849b5e25fSSatish Balay 
5394a2ae208SSatish Balay #undef __FUNCT__
5404a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqSBAIJ"
54113f74950SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
54249b5e25fSSatish Balay {
5430880e062SHong Zhang   Mat_SeqSBAIJ    *a = (Mat_SeqSBAIJ*)A->data;
5446849ba73SBarry Smith   PetscErrorCode  ierr;
545e2ee6c50SBarry Smith   PetscInt        *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
54613f74950SBarry Smith   PetscInt        *imax=a->imax,*ai=a->i,*ailen=a->ilen;
54713f74950SBarry Smith   PetscInt        *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->bs,stepval;
5480880e062SHong Zhang   PetscTruth      roworiented=a->roworiented;
549f15d580aSBarry Smith   const MatScalar *value = v;
550f15d580aSBarry Smith   MatScalar       *ap,*aa = a->a,*bap;
5510880e062SHong Zhang 
55249b5e25fSSatish Balay   PetscFunctionBegin;
5530880e062SHong Zhang   if (roworiented) {
5540880e062SHong Zhang     stepval = (n-1)*bs;
5550880e062SHong Zhang   } else {
5560880e062SHong Zhang     stepval = (m-1)*bs;
5570880e062SHong Zhang   }
5580880e062SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
5590880e062SHong Zhang     row  = im[k];
5600880e062SHong Zhang     if (row < 0) continue;
5612515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
56277431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
5630880e062SHong Zhang #endif
5640880e062SHong Zhang     rp   = aj + ai[row];
5650880e062SHong Zhang     ap   = aa + bs2*ai[row];
5660880e062SHong Zhang     rmax = imax[row];
5670880e062SHong Zhang     nrow = ailen[row];
5680880e062SHong Zhang     low  = 0;
569818f2c47SBarry Smith     high = nrow;
5700880e062SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
5710880e062SHong Zhang       if (in[l] < 0) continue;
5720880e062SHong Zhang       col = in[l];
5732515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
57477431f27SBarry Smith       if (col >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",col,a->nbs-1);
575b1823623SSatish Balay #endif
5760880e062SHong Zhang       if (col < row) continue; /* ignore lower triangular block */
5770880e062SHong Zhang       if (roworiented) {
5780880e062SHong Zhang         value = v + k*(stepval+bs)*bs + l*bs;
5790880e062SHong Zhang       } else {
5800880e062SHong Zhang         value = v + l*(stepval+bs)*bs + k*bs;
5810880e062SHong Zhang       }
582818f2c47SBarry Smith       if (col < lastcol) low = 0; else high = nrow;
583e2ee6c50SBarry Smith       lastcol = col;
5840880e062SHong Zhang       while (high-low > 7) {
5850880e062SHong Zhang         t = (low+high)/2;
5860880e062SHong Zhang         if (rp[t] > col) high = t;
5870880e062SHong Zhang         else             low  = t;
5880880e062SHong Zhang       }
5890880e062SHong Zhang       for (i=low; i<high; i++) {
5900880e062SHong Zhang         if (rp[i] > col) break;
5910880e062SHong Zhang         if (rp[i] == col) {
5920880e062SHong Zhang           bap  = ap +  bs2*i;
5930880e062SHong Zhang           if (roworiented) {
5940880e062SHong Zhang             if (is == ADD_VALUES) {
5950880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
5960880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
5970880e062SHong Zhang                   bap[jj] += *value++;
5980880e062SHong Zhang                 }
5990880e062SHong Zhang               }
6000880e062SHong Zhang             } else {
6010880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6020880e062SHong Zhang                 for (jj=ii; jj<bs2; jj+=bs) {
6030880e062SHong Zhang                   bap[jj] = *value++;
6040880e062SHong Zhang                 }
6050880e062SHong Zhang                }
6060880e062SHong Zhang             }
6070880e062SHong Zhang           } else {
6080880e062SHong Zhang             if (is == ADD_VALUES) {
6090880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6100880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6110880e062SHong Zhang                   *bap++ += *value++;
6120880e062SHong Zhang                 }
6130880e062SHong Zhang               }
6140880e062SHong Zhang             } else {
6150880e062SHong Zhang               for (ii=0; ii<bs; ii++,value+=stepval) {
6160880e062SHong Zhang                 for (jj=0; jj<bs; jj++) {
6170880e062SHong Zhang                   *bap++  = *value++;
6180880e062SHong Zhang                 }
6190880e062SHong Zhang               }
6200880e062SHong Zhang             }
6210880e062SHong Zhang           }
6220880e062SHong Zhang           goto noinsert2;
6230880e062SHong Zhang         }
6240880e062SHong Zhang       }
6250880e062SHong Zhang       if (nonew == 1) goto noinsert2;
62677431f27SBarry Smith       else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
6270880e062SHong Zhang       if (nrow >= rmax) {
6280880e062SHong Zhang         /* there is no extra room in row, therefore enlarge */
62913f74950SBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
6300880e062SHong Zhang         MatScalar *new_a;
6310880e062SHong Zhang 
63277431f27SBarry Smith         if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
6330880e062SHong Zhang 
6340880e062SHong Zhang         /* malloc new storage space */
635a96a251dSBarry Smith         ierr = PetscMalloc3(bs2*new_nz,PetscScalar,&new_a,new_nz,PetscInt,&new_j,a->mbs+1,PetscInt,&new_i);CHKERRQ(ierr);
6360880e062SHong Zhang 
6370880e062SHong Zhang         /* copy over old data into new slots */
6380880e062SHong Zhang         for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];}
6390880e062SHong Zhang         for (ii=row+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;}
64013f74950SBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(PetscInt));CHKERRQ(ierr);
6410880e062SHong Zhang         len  = (new_nz - CHUNKSIZE - ai[row] - nrow);
64213f74950SBarry Smith         ierr = PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr);
6430880e062SHong Zhang         ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr);
6440880e062SHong Zhang         ierr = PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr);
6450880e062SHong Zhang         ierr = PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);
6460880e062SHong Zhang         /* free up old matrix storage */
6470880e062SHong Zhang        if (!a->singlemalloc) {
648a96a251dSBarry Smith           ierr = PetscFree(a->a);CHKERRQ(ierr);
6490880e062SHong Zhang           ierr = PetscFree(a->i);CHKERRQ(ierr);
6500880e062SHong Zhang           ierr = PetscFree(a->j);CHKERRQ(ierr);
651a96a251dSBarry Smith         } else {
652a96a251dSBarry Smith           ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr);
6530880e062SHong Zhang         }
6540880e062SHong Zhang         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
6550880e062SHong Zhang         a->singlemalloc = PETSC_TRUE;
6560880e062SHong Zhang 
6570880e062SHong Zhang         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
6580880e062SHong Zhang         rmax = imax[row] = imax[row] + CHUNKSIZE;
65952e6d16bSBarry Smith         ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr);
6606c6c5352SBarry Smith         a->maxnz += bs2*CHUNKSIZE;
6610880e062SHong Zhang         a->reallocs++;
6626c6c5352SBarry Smith         a->nz++;
6630880e062SHong Zhang       }
6640880e062SHong Zhang       N = nrow++ - 1;
6650880e062SHong Zhang       /* shift up all the later entries in this row */
6660880e062SHong Zhang       for (ii=N; ii>=i; ii--) {
6670880e062SHong Zhang         rp[ii+1] = rp[ii];
6680880e062SHong Zhang         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
6690880e062SHong Zhang       }
6700880e062SHong Zhang       if (N >= i) {
6710880e062SHong Zhang         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
6720880e062SHong Zhang       }
6730880e062SHong Zhang       rp[i] = col;
6740880e062SHong Zhang       bap   = ap +  bs2*i;
6750880e062SHong Zhang       if (roworiented) {
6760880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6770880e062SHong Zhang           for (jj=ii; jj<bs2; jj+=bs) {
6780880e062SHong Zhang             bap[jj] = *value++;
6790880e062SHong Zhang           }
6800880e062SHong Zhang         }
6810880e062SHong Zhang       } else {
6820880e062SHong Zhang         for (ii=0; ii<bs; ii++,value+=stepval) {
6830880e062SHong Zhang           for (jj=0; jj<bs; jj++) {
6840880e062SHong Zhang             *bap++  = *value++;
6850880e062SHong Zhang           }
6860880e062SHong Zhang         }
6870880e062SHong Zhang        }
6880880e062SHong Zhang     noinsert2:;
6890880e062SHong Zhang       low = i;
6900880e062SHong Zhang     }
6910880e062SHong Zhang     ailen[row] = nrow;
6920880e062SHong Zhang   }
6930880e062SHong Zhang    PetscFunctionReturn(0);
69449b5e25fSSatish Balay }
69549b5e25fSSatish Balay 
6964a2ae208SSatish Balay #undef __FUNCT__
6974a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqSBAIJ"
698dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A,MatAssemblyType mode)
69949b5e25fSSatish Balay {
70049b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
7016849ba73SBarry Smith   PetscErrorCode ierr;
70213f74950SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
70313f74950SBarry Smith   PetscInt       m = A->m,*ip,N,*ailen = a->ilen;
70413f74950SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
70549b5e25fSSatish Balay   MatScalar      *aa = a->a,*ap;
70649b5e25fSSatish Balay 
70749b5e25fSSatish Balay   PetscFunctionBegin;
70849b5e25fSSatish Balay   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
70949b5e25fSSatish Balay 
71049b5e25fSSatish Balay   if (m) rmax = ailen[0];
71149b5e25fSSatish Balay   for (i=1; i<mbs; i++) {
71249b5e25fSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
71349b5e25fSSatish Balay     fshift += imax[i-1] - ailen[i-1];
71449b5e25fSSatish Balay      rmax   = PetscMax(rmax,ailen[i]);
71549b5e25fSSatish Balay      if (fshift) {
71649b5e25fSSatish Balay        ip = aj + ai[i]; ap = aa + bs2*ai[i];
71749b5e25fSSatish Balay        N = ailen[i];
71849b5e25fSSatish Balay        for (j=0; j<N; j++) {
71949b5e25fSSatish Balay          ip[j-fshift] = ip[j];
72049b5e25fSSatish Balay          ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
72149b5e25fSSatish Balay        }
72249b5e25fSSatish Balay      }
72349b5e25fSSatish Balay      ai[i] = ai[i-1] + ailen[i-1];
72449b5e25fSSatish Balay   }
72549b5e25fSSatish Balay   if (mbs) {
72649b5e25fSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
72749b5e25fSSatish Balay      ai[mbs] = ai[mbs-1] + ailen[mbs-1];
72849b5e25fSSatish Balay   }
72949b5e25fSSatish Balay   /* reset ilen and imax for each row */
73049b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
73149b5e25fSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
73249b5e25fSSatish Balay   }
7336c6c5352SBarry Smith   a->nz = ai[mbs];
73449b5e25fSSatish Balay 
735b424e231SHong Zhang   /* diagonals may have moved, reset it */
736b424e231SHong Zhang   if (a->diag) {
73713f74950SBarry Smith     ierr = PetscMemcpy(a->diag,ai,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
73849b5e25fSSatish Balay   }
73963ba0a88SBarry Smith   ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",
74063ba0a88SBarry Smith                        m,A->m,A->bs,fshift*bs2,a->nz*bs2));CHKERRQ(ierr);
74163ba0a88SBarry Smith   ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Number of mallocs during MatSetValues is %D\n",a->reallocs));CHKERRQ(ierr);
74263ba0a88SBarry Smith   ierr = PetscLogInfo((A,"MatAssemblyEnd_SeqSBAIJ:Most nonzeros blocks in any row is %D\n",rmax));CHKERRQ(ierr);
74349b5e25fSSatish Balay   a->reallocs          = 0;
74449b5e25fSSatish Balay   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
74549b5e25fSSatish Balay   PetscFunctionReturn(0);
74649b5e25fSSatish Balay }
74749b5e25fSSatish Balay 
74849b5e25fSSatish Balay /*
74949b5e25fSSatish Balay    This function returns an array of flags which indicate the locations of contiguous
75049b5e25fSSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
75149b5e25fSSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
75249b5e25fSSatish Balay    Assume: sizes should be long enough to hold all the values.
75349b5e25fSSatish Balay */
7544a2ae208SSatish Balay #undef __FUNCT__
7554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqSBAIJ_Check_Blocks"
75613f74950SBarry Smith PetscErrorCode MatZeroRows_SeqSBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
75749b5e25fSSatish Balay {
75813f74950SBarry Smith   PetscInt   i,j,k,row;
75949b5e25fSSatish Balay   PetscTruth flg;
76049b5e25fSSatish Balay 
76149b5e25fSSatish Balay   PetscFunctionBegin;
76249b5e25fSSatish Balay    for (i=0,j=0; i<n; j++) {
76349b5e25fSSatish Balay      row = idx[i];
76449b5e25fSSatish Balay      if (row%bs!=0) { /* Not the begining of a block */
76549b5e25fSSatish Balay        sizes[j] = 1;
76649b5e25fSSatish Balay        i++;
76749b5e25fSSatish Balay      } else if (i+bs > n) { /* Beginning of a block, but complete block doesn't exist (at idx end) */
76849b5e25fSSatish Balay        sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
76949b5e25fSSatish Balay        i++;
77049b5e25fSSatish Balay      } else { /* Begining of the block, so check if the complete block exists */
77149b5e25fSSatish Balay        flg = PETSC_TRUE;
77249b5e25fSSatish Balay        for (k=1; k<bs; k++) {
77349b5e25fSSatish Balay          if (row+k != idx[i+k]) { /* break in the block */
77449b5e25fSSatish Balay            flg = PETSC_FALSE;
77549b5e25fSSatish Balay            break;
77649b5e25fSSatish Balay          }
77749b5e25fSSatish Balay        }
778abc0a331SBarry Smith        if (flg) { /* No break in the bs */
77949b5e25fSSatish Balay          sizes[j] = bs;
78049b5e25fSSatish Balay          i+= bs;
78149b5e25fSSatish Balay        } else {
78249b5e25fSSatish Balay          sizes[j] = 1;
78349b5e25fSSatish Balay          i++;
78449b5e25fSSatish Balay        }
78549b5e25fSSatish Balay      }
78649b5e25fSSatish Balay    }
78749b5e25fSSatish Balay    *bs_max = j;
78849b5e25fSSatish Balay    PetscFunctionReturn(0);
78949b5e25fSSatish Balay }
79049b5e25fSSatish Balay 
79149b5e25fSSatish Balay 
79249b5e25fSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
79349b5e25fSSatish Balay    Any a(i,j) with i>j input by user is ingored.
79449b5e25fSSatish Balay */
79549b5e25fSSatish Balay 
7964a2ae208SSatish Balay #undef __FUNCT__
7974a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqSBAIJ"
79813f74950SBarry Smith PetscErrorCode MatSetValues_SeqSBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
79949b5e25fSSatish Balay {
80049b5e25fSSatish Balay   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
8016849ba73SBarry Smith   PetscErrorCode ierr;
802e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
80313f74950SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
80413f74950SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->bs,brow,bcol;
80513f74950SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
80649b5e25fSSatish Balay   MatScalar      *ap,value,*aa=a->a,*bap;
80749b5e25fSSatish Balay 
80849b5e25fSSatish Balay   PetscFunctionBegin;
80949b5e25fSSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
81049b5e25fSSatish Balay     row  = im[k];       /* row number */
81149b5e25fSSatish Balay     brow = row/bs;      /* block row number */
81249b5e25fSSatish Balay     if (row < 0) continue;
8132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
81477431f27SBarry Smith     if (row >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->m-1);
81549b5e25fSSatish Balay #endif
81649b5e25fSSatish Balay     rp   = aj + ai[brow]; /*ptr to beginning of column value of the row block*/
81749b5e25fSSatish Balay     ap   = aa + bs2*ai[brow]; /*ptr to beginning of element value of the row block*/
81849b5e25fSSatish Balay     rmax = imax[brow];  /* maximum space allocated for this row */
81949b5e25fSSatish Balay     nrow = ailen[brow]; /* actual length of this row */
82049b5e25fSSatish Balay     low  = 0;
82149b5e25fSSatish Balay 
82249b5e25fSSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
82349b5e25fSSatish Balay       if (in[l] < 0) continue;
8242515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
82577431f27SBarry Smith       if (in[l] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->m-1);
82649b5e25fSSatish Balay #endif
82749b5e25fSSatish Balay       col = in[l];
82849b5e25fSSatish Balay       bcol = col/bs;              /* block col number */
82949b5e25fSSatish Balay 
830941593c8SHong Zhang       if (brow > bcol) {
831941593c8SHong Zhang         if (a->ignore_ltriangular){
832941593c8SHong Zhang           continue; /* ignore lower triangular values */
833941593c8SHong Zhang         } else {
834941593c8SHong Zhang           SETERRQ(PETSC_ERR_USER,"Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR)");
835941593c8SHong Zhang         }
836941593c8SHong Zhang       }
837f4989cb3SHong Zhang 
83849b5e25fSSatish Balay       ridx = row % bs; cidx = col % bs; /*row and col index inside the block */
8398549e402SHong Zhang       if ((brow==bcol && ridx<=cidx) || (brow<bcol)){
84049b5e25fSSatish Balay         /* element value a(k,l) */
84149b5e25fSSatish Balay         if (roworiented) {
84249b5e25fSSatish Balay           value = v[l + k*n];
84349b5e25fSSatish Balay         } else {
84449b5e25fSSatish Balay           value = v[k + l*m];
84549b5e25fSSatish Balay         }
84649b5e25fSSatish Balay 
84749b5e25fSSatish Balay         /* move pointer bap to a(k,l) quickly and add/insert value */
848e2ee6c50SBarry Smith         if (col < lastcol) low = 0; high = nrow;
849e2ee6c50SBarry Smith         lastcol = col;
85049b5e25fSSatish Balay         while (high-low > 7) {
85149b5e25fSSatish Balay           t = (low+high)/2;
85249b5e25fSSatish Balay           if (rp[t] > bcol) high = t;
85349b5e25fSSatish Balay           else              low  = t;
85449b5e25fSSatish Balay         }
85549b5e25fSSatish Balay         for (i=low; i<high; i++) {
85649b5e25fSSatish Balay           if (rp[i] > bcol) break;
85749b5e25fSSatish Balay           if (rp[i] == bcol) {
85849b5e25fSSatish Balay             bap  = ap +  bs2*i + bs*cidx + ridx;
85949b5e25fSSatish Balay             if (is == ADD_VALUES) *bap += value;
86049b5e25fSSatish Balay             else                  *bap  = value;
8618549e402SHong Zhang             /* for diag block, add/insert its symmetric element a(cidx,ridx) */
8628549e402SHong Zhang             if (brow == bcol && ridx < cidx){
8638549e402SHong Zhang               bap  = ap +  bs2*i + bs*ridx + cidx;
8648549e402SHong Zhang               if (is == ADD_VALUES) *bap += value;
8658549e402SHong Zhang               else                  *bap  = value;
8668549e402SHong Zhang             }
86749b5e25fSSatish Balay             goto noinsert1;
86849b5e25fSSatish Balay           }
86949b5e25fSSatish Balay         }
87049b5e25fSSatish Balay 
87149b5e25fSSatish Balay         if (nonew == 1) goto noinsert1;
87277431f27SBarry Smith         else if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
87349b5e25fSSatish Balay         if (nrow >= rmax) {
87449b5e25fSSatish Balay           /* there is no extra room in row, therefore enlarge */
87513f74950SBarry Smith           PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
87649b5e25fSSatish Balay           MatScalar *new_a;
87749b5e25fSSatish Balay 
87877431f27SBarry Smith           if (nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
87949b5e25fSSatish Balay 
88049b5e25fSSatish Balay           /* Malloc new storage space */
881a96a251dSBarry Smith           ierr = PetscMalloc3(bs2*new_nz,PetscScalar,&new_a,new_nz,PetscInt,&new_j,a->mbs+1,PetscInt,&new_i);CHKERRQ(ierr);
88249b5e25fSSatish Balay 
88349b5e25fSSatish Balay           /* copy over old data into new slots */
88449b5e25fSSatish Balay           for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];}
88549b5e25fSSatish Balay           for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;}
88613f74950SBarry Smith           ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr);
88749b5e25fSSatish Balay           len  = (new_nz - CHUNKSIZE - ai[brow] - nrow);
88813f74950SBarry Smith           ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr);
88949b5e25fSSatish Balay           ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr);
89049b5e25fSSatish Balay           ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr);
89149b5e25fSSatish Balay           ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);
89249b5e25fSSatish Balay           /* free up old matrix storage */
89349b5e25fSSatish Balay           if (!a->singlemalloc) {
894a96a251dSBarry Smith             ierr = PetscFree(a->a);CHKERRQ(ierr);
89549b5e25fSSatish Balay             ierr = PetscFree(a->i);CHKERRQ(ierr);
89649b5e25fSSatish Balay             ierr = PetscFree(a->j);CHKERRQ(ierr);
897a96a251dSBarry Smith           } else {
898a96a251dSBarry Smith             ierr = PetscFree3(a->a,a->i,a->j);CHKERRQ(ierr);
89949b5e25fSSatish Balay           }
90049b5e25fSSatish Balay           aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
90149b5e25fSSatish Balay           a->singlemalloc = PETSC_TRUE;
90249b5e25fSSatish Balay 
90349b5e25fSSatish Balay           rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
90449b5e25fSSatish Balay           rmax = imax[brow] = imax[brow] + CHUNKSIZE;
90552e6d16bSBarry Smith           ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr);
9066c6c5352SBarry Smith           a->maxnz += bs2*CHUNKSIZE;
90749b5e25fSSatish Balay           a->reallocs++;
9086c6c5352SBarry Smith           a->nz++;
90949b5e25fSSatish Balay         }
91049b5e25fSSatish Balay 
91149b5e25fSSatish Balay         N = nrow++ - 1;
91249b5e25fSSatish Balay         /* shift up all the later entries in this row */
91349b5e25fSSatish Balay         for (ii=N; ii>=i; ii--) {
91449b5e25fSSatish Balay           rp[ii+1] = rp[ii];
91549b5e25fSSatish Balay           ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
91649b5e25fSSatish Balay         }
91749b5e25fSSatish Balay         if (N>=i) {
91849b5e25fSSatish Balay           ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
91949b5e25fSSatish Balay         }
92049b5e25fSSatish Balay         rp[i]                      = bcol;
92149b5e25fSSatish Balay         ap[bs2*i + bs*cidx + ridx] = value;
92249b5e25fSSatish Balay       noinsert1:;
92349b5e25fSSatish Balay         low = i;
9248549e402SHong Zhang       }
92549b5e25fSSatish Balay     }   /* end of loop over added columns */
92649b5e25fSSatish Balay     ailen[brow] = nrow;
92749b5e25fSSatish Balay   }   /* end of loop over added rows */
92849b5e25fSSatish Balay   PetscFunctionReturn(0);
92949b5e25fSSatish Balay }
93049b5e25fSSatish Balay 
9316849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactorSymbolic_SeqSBAIJ(Mat,IS,MatFactorInfo*,Mat*);
9326849ba73SBarry Smith EXTERN PetscErrorCode MatCholeskyFactor_SeqSBAIJ(Mat,IS,MatFactorInfo*);
93313f74950SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_SeqSBAIJ(Mat,PetscInt,IS[],PetscInt);
93413f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrix_SeqSBAIJ(Mat,IS,IS,PetscInt,MatReuse,Mat*);
93513f74950SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_SeqSBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat*[]);
9366849ba73SBarry Smith EXTERN PetscErrorCode MatScale_SeqSBAIJ(const PetscScalar*,Mat);
9376849ba73SBarry Smith EXTERN PetscErrorCode MatNorm_SeqSBAIJ(Mat,NormType,PetscReal *);
9386849ba73SBarry Smith EXTERN PetscErrorCode MatEqual_SeqSBAIJ(Mat,Mat,PetscTruth*);
9396849ba73SBarry Smith EXTERN PetscErrorCode MatGetDiagonal_SeqSBAIJ(Mat,Vec);
9406849ba73SBarry Smith EXTERN PetscErrorCode MatDiagonalScale_SeqSBAIJ(Mat,Vec,Vec);
9416849ba73SBarry Smith EXTERN PetscErrorCode MatGetInfo_SeqSBAIJ(Mat,MatInfoType,MatInfo *);
9426849ba73SBarry Smith EXTERN PetscErrorCode MatZeroEntries_SeqSBAIJ(Mat);
9436849ba73SBarry Smith EXTERN PetscErrorCode MatGetRowMax_SeqSBAIJ(Mat,Vec);
94449b5e25fSSatish Balay 
9456849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N(Mat,Vec,Vec);
9466849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1(Mat,Vec,Vec);
9476849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2(Mat,Vec,Vec);
9486849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3(Mat,Vec,Vec);
9496849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4(Mat,Vec,Vec);
9506849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5(Mat,Vec,Vec);
9516849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6(Mat,Vec,Vec);
9526849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7(Mat,Vec,Vec);
95349b5e25fSSatish Balay 
9546849ba73SBarry Smith EXTERN PetscErrorCode MatSolves_SeqSBAIJ_1(Mat,Vecs,Vecs);
955d59c15a7SBarry Smith 
9566849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_1_NaturalOrdering(Mat,Vec,Vec);
9576849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_2_NaturalOrdering(Mat,Vec,Vec);
9586849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_3_NaturalOrdering(Mat,Vec,Vec);
9596849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_4_NaturalOrdering(Mat,Vec,Vec);
9606849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_5_NaturalOrdering(Mat,Vec,Vec);
9616849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_6_NaturalOrdering(Mat,Vec,Vec);
9626849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_7_NaturalOrdering(Mat,Vec,Vec);
9636849ba73SBarry Smith EXTERN PetscErrorCode MatSolve_SeqSBAIJ_N_NaturalOrdering(Mat,Vec,Vec);
96407f98182SSatish Balay 
965af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat,MatFactorInfo*,Mat*);
966af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat,MatFactorInfo*,Mat*);
967af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat,MatFactorInfo*,Mat*);
968af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat,MatFactorInfo*,Mat*);
969af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat,MatFactorInfo*,Mat*);
970af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat,MatFactorInfo*,Mat*);
971af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat,MatFactorInfo*,Mat*);
972af281ebdSHong Zhang EXTERN PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat,MatFactorInfo*,Mat*);
97313f74950SBarry Smith EXTERN PetscErrorCode MatGetInertia_SeqSBAIJ(Mat,PetscInt*,PetscInt*,PetscInt*);
97449b5e25fSSatish Balay 
9756849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_1(Mat,Vec,Vec);
9766849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_2(Mat,Vec,Vec);
9776849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_3(Mat,Vec,Vec);
9786849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_4(Mat,Vec,Vec);
9796849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_5(Mat,Vec,Vec);
9806849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_6(Mat,Vec,Vec);
9816849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_7(Mat,Vec,Vec);
9826849ba73SBarry Smith EXTERN PetscErrorCode MatMult_SeqSBAIJ_N(Mat,Vec,Vec);
98349b5e25fSSatish Balay 
9846849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_1(Mat,Vec,Vec,Vec);
9856849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_2(Mat,Vec,Vec,Vec);
9866849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_3(Mat,Vec,Vec,Vec);
9876849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_4(Mat,Vec,Vec,Vec);
9886849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_5(Mat,Vec,Vec,Vec);
9896849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_6(Mat,Vec,Vec,Vec);
9906849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_7(Mat,Vec,Vec,Vec);
9916849ba73SBarry Smith EXTERN PetscErrorCode MatMultAdd_SeqSBAIJ_N(Mat,Vec,Vec,Vec);
99249b5e25fSSatish Balay 
9934d101231SSatish Balay #ifdef HAVE_MatICCFactor
9946849ba73SBarry Smith /* modified from MatILUFactor_SeqSBAIJ, needs further work!  */
9954a2ae208SSatish Balay #undef __FUNCT__
9964d101231SSatish Balay #define __FUNCT__ "MatICCFactor_SeqSBAIJ"
997dfbe8321SBarry Smith PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA,IS row,MatFactorInfo *info)
99849b5e25fSSatish Balay {
9994ccecd49SHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)inA->data;
100049b5e25fSSatish Balay   Mat            outA;
1001dfbe8321SBarry Smith   PetscErrorCode ierr;
100249b5e25fSSatish Balay   PetscTruth     row_identity,col_identity;
100349b5e25fSSatish Balay 
100449b5e25fSSatish Balay   PetscFunctionBegin;
100549b5e25fSSatish Balay   outA          = inA;
10061260e1f8SHong Zhang   inA->factor   = FACTOR_CHOLESKY;
100749b5e25fSSatish Balay 
100849b5e25fSSatish Balay   if (!a->diag) {
10091a3463dfSHong Zhang     ierr = MatMarkDiagonal_SeqSBAIJ(inA);CHKERRQ(ierr);
101049b5e25fSSatish Balay   }
101149b5e25fSSatish Balay   /*
101249b5e25fSSatish Balay     Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver
101349b5e25fSSatish Balay     for ILU(0) factorization with natural ordering
101449b5e25fSSatish Balay   */
101549b5e25fSSatish Balay   switch (a->bs) {
101649b5e25fSSatish Balay   case 1:
10170fe9e5beSBarry Smith     inA->ops->solve            = MatSolve_SeqSBAIJ_1_NaturalOrdering;
101807f98182SSatish Balay     inA->ops->solvetranspose   = MatSolve_SeqSBAIJ_1_NaturalOrdering;
1019d59c15a7SBarry Smith     inA->ops->solves           = MatSolves_SeqSBAIJ_1;
102063ba0a88SBarry Smith     ierr = PetscLoginfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering solvetrans BS=1\n"));CHKERRQ(ierr);
102149b5e25fSSatish Balay   case 2:
10221a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
10231a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_2_NaturalOrdering;
10241a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_2_NaturalOrdering;
102563ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=2\n"));CHKERRQ(ierr);
102649b5e25fSSatish Balay     break;
102749b5e25fSSatish Balay   case 3:
10281a3463dfSHong Zhang      inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
10291a3463dfSHong Zhang      inA->ops->solve           = MatSolve_SeqSBAIJ_3_NaturalOrdering;
10301a3463dfSHong Zhang      inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_3_NaturalOrdering;
103163ba0a88SBarry Smith      ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=3\n"));CHKERRQ(ierr);
103249b5e25fSSatish Balay      break;
103349b5e25fSSatish Balay   case 4:
10341a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
10351a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_4_NaturalOrdering;
10361a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_4_NaturalOrdering;
103763ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=4\n"));CHKERRQ(ierr);
103849b5e25fSSatish Balay     break;
103949b5e25fSSatish Balay   case 5:
10401a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
10411a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_5_NaturalOrdering;
10421a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_5_NaturalOrdering;
104363ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=5\n"));CHKERRQ(ierr);
104449b5e25fSSatish Balay     break;
104549b5e25fSSatish Balay   case 6:
10461a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
10471a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_6_NaturalOrdering;
10481a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_6_NaturalOrdering;
104963ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=6\n"));CHKERRQ(ierr);
105049b5e25fSSatish Balay     break;
105149b5e25fSSatish Balay   case 7:
10521a3463dfSHong Zhang     inA->ops->lufactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
10531a3463dfSHong Zhang     inA->ops->solvetranspose  = MatSolve_SeqSBAIJ_7_NaturalOrdering;
10541a3463dfSHong Zhang     inA->ops->solve           = MatSolve_SeqSBAIJ_7_NaturalOrdering;
105563ba0a88SBarry Smith     ierr = PetscLogInfo((inA,"MatICCFactor_SeqSBAIJ:Using special in-place natural ordering factor and solve BS=7\n"));CHKERRQ(ierr);
105649b5e25fSSatish Balay     break;
105749b5e25fSSatish Balay   default:
105849b5e25fSSatish Balay     a->row        = row;
10591a3463dfSHong Zhang     a->icol       = col;
106049b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
106149b5e25fSSatish Balay     ierr          = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
106249b5e25fSSatish Balay 
106349b5e25fSSatish Balay     /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
106449b5e25fSSatish Balay     ierr = ISInvertPermutation(col,PETSC_DECIDE, &(a->icol));CHKERRQ(ierr);
106552e6d16bSBarry Smith     ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
106649b5e25fSSatish Balay 
106749b5e25fSSatish Balay     if (!a->solve_work) {
106887828ca2SBarry Smith       ierr = PetscMalloc((A->m+a->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
106952e6d16bSBarry Smith       ierr = PetscLogObjectMemory(inA,(A->m+a->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
107049b5e25fSSatish Balay     }
107149b5e25fSSatish Balay   }
107249b5e25fSSatish Balay 
1073af281ebdSHong Zhang   ierr = MatCholeskyFactorNumeric(inA,info,&outA);CHKERRQ(ierr);
107449b5e25fSSatish Balay   PetscFunctionReturn(0);
107549b5e25fSSatish Balay }
1076950f1e5bSHong Zhang #endif
1077950f1e5bSHong Zhang 
10784a2ae208SSatish Balay #undef __FUNCT__
10794a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_SeqSBAIJ"
1080dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_SeqSBAIJ(Mat A)
108149b5e25fSSatish Balay {
108249b5e25fSSatish Balay   static PetscTruth called = PETSC_FALSE;
108349b5e25fSSatish Balay   MPI_Comm          comm = A->comm;
1084dfbe8321SBarry Smith   PetscErrorCode    ierr;
108549b5e25fSSatish Balay 
108649b5e25fSSatish Balay   PetscFunctionBegin;
108749b5e25fSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
108849b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm," Options for MATSEQSBAIJ and MATMPISBAIJ matrix formats (the defaults):\n");CHKERRQ(ierr);
108949b5e25fSSatish Balay   ierr = (*PetscHelpPrintf)(comm,"  -mat_block_size <block_size>\n");CHKERRQ(ierr);
1090941593c8SHong Zhang   ierr = (*PetscHelpPrintf)(comm,"  -mat_ignore_ltriangular: Ignore lower triangular values set by user\n");CHKERRQ(ierr);
109149b5e25fSSatish Balay   PetscFunctionReturn(0);
109249b5e25fSSatish Balay }
109349b5e25fSSatish Balay 
109449b5e25fSSatish Balay EXTERN_C_BEGIN
10954a2ae208SSatish Balay #undef __FUNCT__
10964a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices_SeqSBAIJ"
1097be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat,PetscInt *indices)
109849b5e25fSSatish Balay {
1099045c9aa0SHong Zhang   Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data;
110013f74950SBarry Smith   PetscInt     i,nz,n;
110149b5e25fSSatish Balay 
110249b5e25fSSatish Balay   PetscFunctionBegin;
11036c6c5352SBarry Smith   nz = baij->maxnz;
1104c464158bSHong Zhang   n  = mat->n;
110549b5e25fSSatish Balay   for (i=0; i<nz; i++) {
110649b5e25fSSatish Balay     baij->j[i] = indices[i];
110749b5e25fSSatish Balay   }
11086c6c5352SBarry Smith    baij->nz = nz;
110949b5e25fSSatish Balay    for (i=0; i<n; i++) {
111049b5e25fSSatish Balay      baij->ilen[i] = baij->imax[i];
111149b5e25fSSatish Balay    }
111249b5e25fSSatish Balay    PetscFunctionReturn(0);
111349b5e25fSSatish Balay }
111449b5e25fSSatish Balay EXTERN_C_END
111549b5e25fSSatish Balay 
11164a2ae208SSatish Balay #undef __FUNCT__
11174a2ae208SSatish Balay #define __FUNCT__ "MatSeqSBAIJSetColumnIndices"
111849b5e25fSSatish Balay /*@
111919585528SSatish Balay   MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
112049b5e25fSSatish Balay   in the matrix.
112149b5e25fSSatish Balay 
112249b5e25fSSatish Balay   Input Parameters:
112319585528SSatish Balay   +  mat     - the SeqSBAIJ matrix
112449b5e25fSSatish Balay   -  indices - the column indices
112549b5e25fSSatish Balay 
112649b5e25fSSatish Balay   Level: advanced
112749b5e25fSSatish Balay 
112849b5e25fSSatish Balay   Notes:
112949b5e25fSSatish Balay   This can be called if you have precomputed the nonzero structure of the
113049b5e25fSSatish Balay   matrix and want to provide it to the matrix object to improve the performance
113149b5e25fSSatish Balay   of the MatSetValues() operation.
113249b5e25fSSatish Balay 
113349b5e25fSSatish Balay   You MUST have set the correct numbers of nonzeros per row in the call to
1134d1be2dadSMatthew Knepley   MatCreateSeqSBAIJ(), and the columns indices MUST be sorted.
113549b5e25fSSatish Balay 
1136ab9f2c04SSatish Balay   MUST be called before any calls to MatSetValues()
113749b5e25fSSatish Balay 
1138ab9f2c04SSatish Balay   .seealso: MatCreateSeqSBAIJ
113949b5e25fSSatish Balay @*/
1140be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetColumnIndices(Mat mat,PetscInt *indices)
114149b5e25fSSatish Balay {
114213f74950SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
114349b5e25fSSatish Balay 
114449b5e25fSSatish Balay   PetscFunctionBegin;
11454482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
11464482741eSBarry Smith   PetscValidPointer(indices,2);
1147c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqSBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
114849b5e25fSSatish Balay   if (f) {
114949b5e25fSSatish Balay     ierr = (*f)(mat,indices);CHKERRQ(ierr);
115049b5e25fSSatish Balay   } else {
1151e005ede5SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Wrong type of matrix to set column indices");
115249b5e25fSSatish Balay   }
115349b5e25fSSatish Balay   PetscFunctionReturn(0);
115449b5e25fSSatish Balay }
115549b5e25fSSatish Balay 
11564a2ae208SSatish Balay #undef __FUNCT__
11574a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqSBAIJ"
1158dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqSBAIJ(Mat A)
1159273d9f13SBarry Smith {
1160dfbe8321SBarry Smith   PetscErrorCode ierr;
1161273d9f13SBarry Smith 
1162273d9f13SBarry Smith   PetscFunctionBegin;
1163*ab93d7beSBarry Smith   ierr =  MatSeqSBAIJSetPreallocation_SeqSBAIJ(A,1,PETSC_DEFAULT,0);CHKERRQ(ierr);
1164273d9f13SBarry Smith   PetscFunctionReturn(0);
1165273d9f13SBarry Smith }
1166273d9f13SBarry Smith 
1167a6ece127SHong Zhang #undef __FUNCT__
1168a6ece127SHong Zhang #define __FUNCT__ "MatGetArray_SeqSBAIJ"
1169dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1170a6ece127SHong Zhang {
1171a6ece127SHong Zhang   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data;
1172a6ece127SHong Zhang   PetscFunctionBegin;
1173a6ece127SHong Zhang   *array = a->a;
1174a6ece127SHong Zhang   PetscFunctionReturn(0);
1175a6ece127SHong Zhang }
1176a6ece127SHong Zhang 
1177a6ece127SHong Zhang #undef __FUNCT__
1178a6ece127SHong Zhang #define __FUNCT__ "MatRestoreArray_SeqSBAIJ"
1179dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqSBAIJ(Mat A,PetscScalar *array[])
1180a6ece127SHong Zhang {
1181a6ece127SHong Zhang   PetscFunctionBegin;
1182a6ece127SHong Zhang   PetscFunctionReturn(0);
1183a6ece127SHong Zhang  }
1184a6ece127SHong Zhang 
118542ee4b1aSHong Zhang #include "petscblaslapack.h"
118642ee4b1aSHong Zhang #undef __FUNCT__
118742ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqSBAIJ"
1188dfbe8321SBarry Smith PetscErrorCode MatAXPY_SeqSBAIJ(const PetscScalar *a,Mat X,Mat Y,MatStructure str)
118942ee4b1aSHong Zhang {
119042ee4b1aSHong Zhang   Mat_SeqSBAIJ   *x=(Mat_SeqSBAIJ *)X->data, *y=(Mat_SeqSBAIJ *)Y->data;
1191dfbe8321SBarry Smith   PetscErrorCode ierr;
1192521d7252SBarry Smith   PetscInt       i,bs=Y->bs,bs2,j;
11934ce68768SBarry Smith   PetscBLASInt   bnz = (PetscBLASInt)x->nz,one = 1;
119442ee4b1aSHong Zhang 
119542ee4b1aSHong Zhang   PetscFunctionBegin;
119642ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
119771044d3cSBarry Smith     BLASaxpy_(&bnz,(PetscScalar*)a,x->a,&one,y->a,&one);
1198c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1199c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
1200c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
1201c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
1202c537a176SHong Zhang     }
1203c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
1204c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
1205c4319e64SHong Zhang       y->XtoY = X;
1206c537a176SHong Zhang     }
1207c4319e64SHong Zhang     bs2 = bs*bs;
12086c6c5352SBarry Smith     for (i=0; i<x->nz; i++) {
1209c4319e64SHong Zhang       j = 0;
1210c4319e64SHong Zhang       while (j < bs2){
12116550863bSHong Zhang         y->a[bs2*y->xtoy[i]+j] += (*a)*(x->a[bs2*i+j]);
1212c4319e64SHong Zhang         j++;
1213c537a176SHong Zhang       }
1214c4319e64SHong Zhang     }
121563ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatAXPY_SeqSBAIJ: ratio of nnz_s(X)/nnz_s(Y): %D/%D = %g\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz)));CHKERRQ(ierr);
121642ee4b1aSHong Zhang   } else {
121742ee4b1aSHong Zhang     ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr);
121842ee4b1aSHong Zhang   }
121942ee4b1aSHong Zhang   PetscFunctionReturn(0);
122042ee4b1aSHong Zhang }
122142ee4b1aSHong Zhang 
1222efcf0fc3SBarry Smith #undef __FUNCT__
1223efcf0fc3SBarry Smith #define __FUNCT__ "MatIsSymmetric_SeqSBAIJ"
1224dfbe8321SBarry Smith PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A,PetscReal tol,PetscTruth *flg)
1225efcf0fc3SBarry Smith {
1226efcf0fc3SBarry Smith   PetscFunctionBegin;
1227efcf0fc3SBarry Smith   *flg = PETSC_TRUE;
1228efcf0fc3SBarry Smith   PetscFunctionReturn(0);
1229efcf0fc3SBarry Smith }
1230efcf0fc3SBarry Smith 
1231efcf0fc3SBarry Smith #undef __FUNCT__
1232efcf0fc3SBarry Smith #define __FUNCT__ "MatIsStructurallySymmetric_SeqSBAIJ"
1233dfbe8321SBarry Smith PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A,PetscTruth *flg)
1234efcf0fc3SBarry Smith {
1235efcf0fc3SBarry Smith    PetscFunctionBegin;
1236efcf0fc3SBarry Smith    *flg = PETSC_TRUE;
1237efcf0fc3SBarry Smith    PetscFunctionReturn(0);
1238efcf0fc3SBarry Smith }
1239efcf0fc3SBarry Smith 
1240efcf0fc3SBarry Smith #undef __FUNCT__
1241efcf0fc3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqSBAIJ"
1242dfbe8321SBarry Smith PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A,PetscTruth *flg)
1243efcf0fc3SBarry Smith  {
1244efcf0fc3SBarry Smith    PetscFunctionBegin;
1245efcf0fc3SBarry Smith    *flg = PETSC_FALSE;
1246efcf0fc3SBarry Smith    PetscFunctionReturn(0);
1247efcf0fc3SBarry Smith  }
1248efcf0fc3SBarry Smith 
124949b5e25fSSatish Balay /* -------------------------------------------------------------------*/
125049b5e25fSSatish Balay static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
125149b5e25fSSatish Balay        MatGetRow_SeqSBAIJ,
125249b5e25fSSatish Balay        MatRestoreRow_SeqSBAIJ,
125349b5e25fSSatish Balay        MatMult_SeqSBAIJ_N,
125497304618SKris Buschelman /* 4*/ MatMultAdd_SeqSBAIJ_N,
1255e005ede5SBarry Smith        MatMult_SeqSBAIJ_N,
1256e005ede5SBarry Smith        MatMultAdd_SeqSBAIJ_N,
125749b5e25fSSatish Balay        MatSolve_SeqSBAIJ_N,
125849b5e25fSSatish Balay        0,
125949b5e25fSSatish Balay        0,
126097304618SKris Buschelman /*10*/ 0,
126149b5e25fSSatish Balay        0,
12625f4ef2deSHong Zhang        MatCholeskyFactor_SeqSBAIJ,
1263d06b337dSHong Zhang        MatRelax_SeqSBAIJ,
126449b5e25fSSatish Balay        MatTranspose_SeqSBAIJ,
126597304618SKris Buschelman /*15*/ MatGetInfo_SeqSBAIJ,
126649b5e25fSSatish Balay        MatEqual_SeqSBAIJ,
126749b5e25fSSatish Balay        MatGetDiagonal_SeqSBAIJ,
126849b5e25fSSatish Balay        MatDiagonalScale_SeqSBAIJ,
126949b5e25fSSatish Balay        MatNorm_SeqSBAIJ,
127097304618SKris Buschelman /*20*/ 0,
127149b5e25fSSatish Balay        MatAssemblyEnd_SeqSBAIJ,
127249b5e25fSSatish Balay        0,
127349b5e25fSSatish Balay        MatSetOption_SeqSBAIJ,
127449b5e25fSSatish Balay        MatZeroEntries_SeqSBAIJ,
1275dcf5cc72SBarry Smith /*25*/ 0,
127649b5e25fSSatish Balay        0,
127749b5e25fSSatish Balay        0,
12785f4ef2deSHong Zhang        MatCholeskyFactorSymbolic_SeqSBAIJ,
12795f4ef2deSHong Zhang        MatCholeskyFactorNumeric_SeqSBAIJ_N,
128097304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqSBAIJ,
1281c464158bSHong Zhang        0,
12824d101231SSatish Balay        MatICCFactorSymbolic_SeqSBAIJ,
1283a6ece127SHong Zhang        MatGetArray_SeqSBAIJ,
1284a6ece127SHong Zhang        MatRestoreArray_SeqSBAIJ,
128597304618SKris Buschelman /*35*/ MatDuplicate_SeqSBAIJ,
128649b5e25fSSatish Balay        0,
128749b5e25fSSatish Balay        0,
128849b5e25fSSatish Balay        0,
1289950f1e5bSHong Zhang        0,
129097304618SKris Buschelman /*40*/ MatAXPY_SeqSBAIJ,
129149b5e25fSSatish Balay        MatGetSubMatrices_SeqSBAIJ,
129249b5e25fSSatish Balay        MatIncreaseOverlap_SeqSBAIJ,
129349b5e25fSSatish Balay        MatGetValues_SeqSBAIJ,
129449b5e25fSSatish Balay        0,
129597304618SKris Buschelman /*45*/ MatPrintHelp_SeqSBAIJ,
129649b5e25fSSatish Balay        MatScale_SeqSBAIJ,
129749b5e25fSSatish Balay        0,
129849b5e25fSSatish Balay        0,
129949b5e25fSSatish Balay        0,
1300521d7252SBarry Smith /*50*/ 0,
130149b5e25fSSatish Balay        MatGetRowIJ_SeqSBAIJ,
130249b5e25fSSatish Balay        MatRestoreRowIJ_SeqSBAIJ,
130349b5e25fSSatish Balay        0,
130449b5e25fSSatish Balay        0,
130597304618SKris Buschelman /*55*/ 0,
130649b5e25fSSatish Balay        0,
130749b5e25fSSatish Balay        0,
130849b5e25fSSatish Balay        0,
130949b5e25fSSatish Balay        MatSetValuesBlocked_SeqSBAIJ,
131097304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqSBAIJ,
131149b5e25fSSatish Balay        0,
131249b5e25fSSatish Balay        0,
13138a124369SBarry Smith        MatGetPetscMaps_Petsc,
1314d959ec07SHong Zhang        0,
131597304618SKris Buschelman /*65*/ 0,
1316d959ec07SHong Zhang        0,
1317d959ec07SHong Zhang        0,
1318d959ec07SHong Zhang        0,
1319d959ec07SHong Zhang        0,
132097304618SKris Buschelman /*70*/ MatGetRowMax_SeqSBAIJ,
13213e0d88b5SBarry Smith        0,
13223e0d88b5SBarry Smith        0,
13233e0d88b5SBarry Smith        0,
13243e0d88b5SBarry Smith        0,
132597304618SKris Buschelman /*75*/ 0,
13263e0d88b5SBarry Smith        0,
13273e0d88b5SBarry Smith        0,
13283e0d88b5SBarry Smith        0,
13293e0d88b5SBarry Smith        0,
133097304618SKris Buschelman /*80*/ 0,
13313e0d88b5SBarry Smith        0,
13323e0d88b5SBarry Smith        0,
13333e0d88b5SBarry Smith #if !defined(PETSC_USE_COMPLEX)
133497304618SKris Buschelman        MatGetInertia_SeqSBAIJ,
13353e0d88b5SBarry Smith #else
133697304618SKris Buschelman        0,
13373e0d88b5SBarry Smith #endif
1338865e5f61SKris Buschelman        MatLoad_SeqSBAIJ,
1339865e5f61SKris Buschelman /*85*/ MatIsSymmetric_SeqSBAIJ,
1340865e5f61SKris Buschelman        MatIsHermitian_SeqSBAIJ,
1341efcf0fc3SBarry Smith        MatIsStructurallySymmetric_SeqSBAIJ,
1342865e5f61SKris Buschelman        0,
1343865e5f61SKris Buschelman        0,
1344865e5f61SKris Buschelman /*90*/ 0,
1345865e5f61SKris Buschelman        0,
1346865e5f61SKris Buschelman        0,
1347865e5f61SKris Buschelman        0,
1348865e5f61SKris Buschelman        0,
1349865e5f61SKris Buschelman /*95*/ 0,
1350865e5f61SKris Buschelman        0,
1351865e5f61SKris Buschelman        0,
1352865e5f61SKris Buschelman        0};
1353be1d678aSKris Buschelman 
135449b5e25fSSatish Balay EXTERN_C_BEGIN
13554a2ae208SSatish Balay #undef __FUNCT__
13564a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqSBAIJ"
1357be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqSBAIJ(Mat mat)
135849b5e25fSSatish Balay {
13594afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ *)mat->data;
1360521d7252SBarry Smith   PetscInt       nz = aij->i[mat->m]*mat->bs*aij->bs2;
1361dfbe8321SBarry Smith   PetscErrorCode ierr;
136249b5e25fSSatish Balay 
136349b5e25fSSatish Balay   PetscFunctionBegin;
136449b5e25fSSatish Balay   if (aij->nonew != 1) {
1365e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
136649b5e25fSSatish Balay   }
136749b5e25fSSatish Balay 
136849b5e25fSSatish Balay   /* allocate space for values if not already there */
136949b5e25fSSatish Balay   if (!aij->saved_values) {
137087828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
137149b5e25fSSatish Balay   }
137249b5e25fSSatish Balay 
137349b5e25fSSatish Balay   /* copy values over */
137487828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
137549b5e25fSSatish Balay   PetscFunctionReturn(0);
137649b5e25fSSatish Balay }
137749b5e25fSSatish Balay EXTERN_C_END
137849b5e25fSSatish Balay 
137949b5e25fSSatish Balay EXTERN_C_BEGIN
13804a2ae208SSatish Balay #undef __FUNCT__
13814a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqSBAIJ"
1382be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqSBAIJ(Mat mat)
138349b5e25fSSatish Balay {
13844afc71dfSHong Zhang   Mat_SeqSBAIJ   *aij = (Mat_SeqSBAIJ *)mat->data;
13856849ba73SBarry Smith   PetscErrorCode ierr;
1386521d7252SBarry Smith   PetscInt       nz = aij->i[mat->m]*mat->bs*aij->bs2;
138749b5e25fSSatish Balay 
138849b5e25fSSatish Balay   PetscFunctionBegin;
138949b5e25fSSatish Balay   if (aij->nonew != 1) {
1390e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NO_NEW_NONZERO_LOCATIONS);first");
139149b5e25fSSatish Balay   }
139249b5e25fSSatish Balay   if (!aij->saved_values) {
1393e005ede5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
139449b5e25fSSatish Balay   }
139549b5e25fSSatish Balay 
139649b5e25fSSatish Balay   /* copy values over */
139787828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
139849b5e25fSSatish Balay   PetscFunctionReturn(0);
139949b5e25fSSatish Balay }
140049b5e25fSSatish Balay EXTERN_C_END
140149b5e25fSSatish Balay 
14028549e402SHong Zhang EXTERN_C_BEGIN
14034a2ae208SSatish Balay #undef __FUNCT__
1404a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation_SeqSBAIJ"
1405be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
140649b5e25fSSatish Balay {
1407c464158bSHong Zhang   Mat_SeqSBAIJ   *b = (Mat_SeqSBAIJ*)B->data;
14086849ba73SBarry Smith   PetscErrorCode ierr;
1409*ab93d7beSBarry Smith   PetscInt       i,mbs,bs2;
1410*ab93d7beSBarry Smith   PetscTruth     skipallocation = PETSC_FALSE,flg;
141149b5e25fSSatish Balay 
141249b5e25fSSatish Balay   PetscFunctionBegin;
1413273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1414e82a3eeeSBarry Smith   ierr = PetscOptionsGetInt(B->prefix,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1415c464158bSHong Zhang   mbs  = B->m/bs;
141649b5e25fSSatish Balay   bs2  = bs*bs;
141749b5e25fSSatish Balay 
1418c464158bSHong Zhang   if (mbs*bs != B->m) {
141929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Number rows, cols must be divisible by blocksize");
142049b5e25fSSatish Balay   }
142149b5e25fSSatish Balay 
1422*ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
1423*ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
1424*ab93d7beSBarry Smith     nz             = 0;
1425*ab93d7beSBarry Smith   }
1426*ab93d7beSBarry Smith 
1427435da068SBarry Smith   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
142877431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
142949b5e25fSSatish Balay   if (nnz) {
143049b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
143177431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
143277431f27SBarry Smith       if (nnz[i] > mbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],mbs);
143349b5e25fSSatish Balay     }
143449b5e25fSSatish Balay   }
143549b5e25fSSatish Balay 
1436e82a3eeeSBarry Smith   ierr    = PetscOptionsHasName(B->prefix,"-mat_no_unroll",&flg);CHKERRQ(ierr);
143749b5e25fSSatish Balay   if (!flg) {
143849b5e25fSSatish Balay     switch (bs) {
143949b5e25fSSatish Balay     case 1:
14404ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1;
144149b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_1;
1442d59c15a7SBarry Smith       B->ops->solves          = MatSolves_SeqSBAIJ_1;
1443e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_1;
144449b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_1;
144549b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_1;
144649b5e25fSSatish Balay       break;
144749b5e25fSSatish Balay     case 2:
14484ccecd49SHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
144949b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_2;
1450e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_2;
145149b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_2;
145249b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_2;
145349b5e25fSSatish Balay       break;
145449b5e25fSSatish Balay     case 3:
14555f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
145649b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_3;
1457e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_3;
145849b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_3;
145949b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_3;
146049b5e25fSSatish Balay       break;
146149b5e25fSSatish Balay     case 4:
14625f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
146349b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_4;
1464e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_4;
146549b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_4;
146649b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_4;
146749b5e25fSSatish Balay       break;
146849b5e25fSSatish Balay     case 5:
14695f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
147049b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_5;
1471e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_5;
147249b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_5;
147349b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_5;
147449b5e25fSSatish Balay       break;
147549b5e25fSSatish Balay     case 6:
14765f4ef2deSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
147749b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_6;
1478e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_6;
147949b5e25fSSatish Balay       B->ops->mult            = MatMult_SeqSBAIJ_6;
148049b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_6;
148149b5e25fSSatish Balay       break;
148249b5e25fSSatish Balay     case 7:
1483de53e5efSHong Zhang       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
148449b5e25fSSatish Balay       B->ops->solve           = MatSolve_SeqSBAIJ_7;
1485e005ede5SBarry Smith       B->ops->solvetranspose  = MatSolve_SeqSBAIJ_7;
1486de53e5efSHong Zhang       B->ops->mult            = MatMult_SeqSBAIJ_7;
148749b5e25fSSatish Balay       B->ops->multadd         = MatMultAdd_SeqSBAIJ_7;
148849b5e25fSSatish Balay       break;
148949b5e25fSSatish Balay     }
149049b5e25fSSatish Balay   }
149149b5e25fSSatish Balay 
149249b5e25fSSatish Balay   b->mbs = mbs;
14934afc71dfSHong Zhang   b->nbs = mbs;
1494*ab93d7beSBarry Smith   if (!skipallocation) {
1495*ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
1496*ab93d7beSBarry Smith     ierr   = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
1497*ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
149849b5e25fSSatish Balay     if (!nnz) {
1499435da068SBarry Smith       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
150049b5e25fSSatish Balay       else if (nz <= 0)        nz = 1;
150149b5e25fSSatish Balay       for (i=0; i<mbs; i++) {
15028cef66ccSHong Zhang         b->imax[i] = nz;
150349b5e25fSSatish Balay       }
1504153ea458SHong Zhang       nz = nz*mbs; /* total nz */
150549b5e25fSSatish Balay     } else {
150649b5e25fSSatish Balay       nz = 0;
15078cef66ccSHong Zhang       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
150849b5e25fSSatish Balay     }
15096c6c5352SBarry Smith     /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */
151049b5e25fSSatish Balay 
151149b5e25fSSatish Balay     /* allocate the matrix space */
1512a96a251dSBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->m+1,PetscInt,&b->i);CHKERRQ(ierr);
15136c6c5352SBarry Smith     ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
151413f74950SBarry Smith     ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
151549b5e25fSSatish Balay     b->singlemalloc = PETSC_TRUE;
151649b5e25fSSatish Balay 
151749b5e25fSSatish Balay     /* pointer to beginning of each row */
151849b5e25fSSatish Balay     b->i[0] = 0;
151949b5e25fSSatish Balay     for (i=1; i<mbs+1; i++) {
152049b5e25fSSatish Balay       b->i[i] = b->i[i-1] + b->imax[i-1];
152149b5e25fSSatish Balay     }
1522*ab93d7beSBarry Smith   }
152349b5e25fSSatish Balay 
1524521d7252SBarry Smith   B->bs               = bs;
152549b5e25fSSatish Balay   b->bs2              = bs2;
15266c6c5352SBarry Smith   b->nz             = 0;
15276c6c5352SBarry Smith   b->maxnz          = nz*bs2;
1528153ea458SHong Zhang 
152916cdd363SHong Zhang   b->inew             = 0;
153016cdd363SHong Zhang   b->jnew             = 0;
153116cdd363SHong Zhang   b->anew             = 0;
153216cdd363SHong Zhang   b->a2anew           = 0;
15331a3463dfSHong Zhang   b->permute          = PETSC_FALSE;
1534c464158bSHong Zhang   PetscFunctionReturn(0);
1535c464158bSHong Zhang }
1536a23d5eceSKris Buschelman EXTERN_C_END
1537153ea458SHong Zhang 
1538d769727bSBarry Smith EXTERN_C_BEGIN
1539be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqAIJ(Mat,const MatType,MatReuse,Mat*);
1540be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqSBAIJ_SeqBAIJ(Mat,const MatType,MatReuse,Mat*);
1541d769727bSBarry Smith EXTERN_C_END
1542d769727bSBarry Smith 
15430bad9183SKris Buschelman /*MC
1544fafad747SKris Buschelman   MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
15450bad9183SKris Buschelman   based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.
15460bad9183SKris Buschelman 
15470bad9183SKris Buschelman   Options Database Keys:
15480bad9183SKris Buschelman   . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to MatSetFromOptions()
15490bad9183SKris Buschelman 
15500bad9183SKris Buschelman   Level: beginner
15510bad9183SKris Buschelman 
15520bad9183SKris Buschelman   .seealso: MatCreateSeqSBAIJ
15530bad9183SKris Buschelman M*/
15540bad9183SKris Buschelman 
1555a23d5eceSKris Buschelman EXTERN_C_BEGIN
1556a23d5eceSKris Buschelman #undef __FUNCT__
1557a23d5eceSKris Buschelman #define __FUNCT__ "MatCreate_SeqSBAIJ"
1558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqSBAIJ(Mat B)
1559a23d5eceSKris Buschelman {
1560a23d5eceSKris Buschelman   Mat_SeqSBAIJ   *b;
1561dfbe8321SBarry Smith   PetscErrorCode ierr;
156213f74950SBarry Smith   PetscMPIInt    size;
1563941593c8SHong Zhang   PetscTruth     flg;
1564a23d5eceSKris Buschelman 
1565a23d5eceSKris Buschelman   PetscFunctionBegin;
1566a23d5eceSKris Buschelman   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
1567a23d5eceSKris Buschelman   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
1568a23d5eceSKris Buschelman   B->m = B->M = PetscMax(B->m,B->M);
1569a23d5eceSKris Buschelman   B->n = B->N = PetscMax(B->n,B->N);
1570a23d5eceSKris Buschelman 
1571a23d5eceSKris Buschelman   ierr    = PetscNew(Mat_SeqSBAIJ,&b);CHKERRQ(ierr);
1572a23d5eceSKris Buschelman   B->data = (void*)b;
1573a23d5eceSKris Buschelman   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1574a23d5eceSKris Buschelman   B->ops->destroy     = MatDestroy_SeqSBAIJ;
1575a23d5eceSKris Buschelman   B->ops->view        = MatView_SeqSBAIJ;
1576a23d5eceSKris Buschelman   B->factor           = 0;
1577a23d5eceSKris Buschelman   B->mapping          = 0;
1578a23d5eceSKris Buschelman   b->row              = 0;
1579a23d5eceSKris Buschelman   b->icol             = 0;
1580a23d5eceSKris Buschelman   b->reallocs         = 0;
1581a23d5eceSKris Buschelman   b->saved_values     = 0;
1582a23d5eceSKris Buschelman 
1583a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
1584a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
1585a23d5eceSKris Buschelman 
1586a23d5eceSKris Buschelman   b->sorted           = PETSC_FALSE;
1587a23d5eceSKris Buschelman   b->roworiented      = PETSC_TRUE;
1588a23d5eceSKris Buschelman   b->nonew            = 0;
1589a23d5eceSKris Buschelman   b->diag             = 0;
1590a23d5eceSKris Buschelman   b->solve_work       = 0;
1591a23d5eceSKris Buschelman   b->mult_work        = 0;
1592a23d5eceSKris Buschelman   B->spptr            = 0;
1593a23d5eceSKris Buschelman   b->keepzeroedrows   = PETSC_FALSE;
1594a23d5eceSKris Buschelman   b->xtoy             = 0;
1595a23d5eceSKris Buschelman   b->XtoY             = 0;
1596a23d5eceSKris Buschelman 
1597a23d5eceSKris Buschelman   b->inew             = 0;
1598a23d5eceSKris Buschelman   b->jnew             = 0;
1599a23d5eceSKris Buschelman   b->anew             = 0;
1600a23d5eceSKris Buschelman   b->a2anew           = 0;
1601a23d5eceSKris Buschelman   b->permute          = PETSC_FALSE;
1602a23d5eceSKris Buschelman 
1603941593c8SHong Zhang   b->ignore_ltriangular = PETSC_FALSE;
1604941593c8SHong Zhang   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_ignore_lower_triangular",&flg);CHKERRQ(ierr);
1605941593c8SHong Zhang   if (flg) b->ignore_ltriangular = PETSC_TRUE;
1606941593c8SHong Zhang 
1607a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
1608a23d5eceSKris Buschelman                                      "MatStoreValues_SeqSBAIJ",
1609a23d5eceSKris Buschelman                                      MatStoreValues_SeqSBAIJ);CHKERRQ(ierr);
1610a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
1611a23d5eceSKris Buschelman                                      "MatRetrieveValues_SeqSBAIJ",
1612a23d5eceSKris Buschelman                                      (void*)MatRetrieveValues_SeqSBAIJ);CHKERRQ(ierr);
1613a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetColumnIndices_C",
1614a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetColumnIndices_SeqSBAIJ",
1615a23d5eceSKris Buschelman                                      MatSeqSBAIJSetColumnIndices_SeqSBAIJ);CHKERRQ(ierr);
16164e5e7fe4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqaij_C",
16174e5e7fe4SHong Zhang                                      "MatConvert_SeqSBAIJ_SeqAIJ",
16184e5e7fe4SHong Zhang                                       MatConvert_SeqSBAIJ_SeqAIJ);CHKERRQ(ierr);
1619a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqsbaij_seqbaij_C",
1620a0e1a404SHong Zhang                                      "MatConvert_SeqSBAIJ_SeqBAIJ",
1621a0e1a404SHong Zhang                                       MatConvert_SeqSBAIJ_SeqBAIJ);CHKERRQ(ierr);
1622a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",
1623a23d5eceSKris Buschelman                                      "MatSeqSBAIJSetPreallocation_SeqSBAIJ",
1624a23d5eceSKris Buschelman                                      MatSeqSBAIJSetPreallocation_SeqSBAIJ);CHKERRQ(ierr);
162523ce1328SBarry Smith 
162623ce1328SBarry Smith   B->symmetric                  = PETSC_TRUE;
162723ce1328SBarry Smith   B->structurally_symmetric     = PETSC_TRUE;
162823ce1328SBarry Smith   B->symmetric_set              = PETSC_TRUE;
162923ce1328SBarry Smith   B->structurally_symmetric_set = PETSC_TRUE;
1630a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1631a23d5eceSKris Buschelman }
1632a23d5eceSKris Buschelman EXTERN_C_END
1633a23d5eceSKris Buschelman 
1634a23d5eceSKris Buschelman #undef __FUNCT__
1635a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqSBAIJSetPreallocation"
1636a23d5eceSKris Buschelman /*@C
1637a23d5eceSKris Buschelman    MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
1638a23d5eceSKris Buschelman    compressed row) format.  For good matrix assembly performance the
1639a23d5eceSKris Buschelman    user should preallocate the matrix storage by setting the parameter nz
1640a23d5eceSKris Buschelman    (or the array nnz).  By setting these parameters accurately, performance
1641a23d5eceSKris Buschelman    during matrix assembly can be increased by more than a factor of 50.
1642a23d5eceSKris Buschelman 
1643a23d5eceSKris Buschelman    Collective on Mat
1644a23d5eceSKris Buschelman 
1645a23d5eceSKris Buschelman    Input Parameters:
1646a23d5eceSKris Buschelman +  A - the symmetric matrix
1647a23d5eceSKris Buschelman .  bs - size of block
1648a23d5eceSKris Buschelman .  nz - number of block nonzeros per block row (same for all rows)
1649a23d5eceSKris Buschelman -  nnz - array containing the number of block nonzeros in the upper triangular plus
1650a23d5eceSKris Buschelman          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1651a23d5eceSKris Buschelman 
1652a23d5eceSKris Buschelman    Options Database Keys:
1653a23d5eceSKris Buschelman .   -mat_no_unroll - uses code that does not unroll the loops in the
1654a23d5eceSKris Buschelman                      block calculations (much slower)
1655a23d5eceSKris Buschelman .    -mat_block_size - size of the blocks to use
1656a23d5eceSKris Buschelman 
1657a23d5eceSKris Buschelman    Level: intermediate
1658a23d5eceSKris Buschelman 
1659a23d5eceSKris Buschelman    Notes:
1660a23d5eceSKris Buschelman    Specify the preallocated storage with either nz or nnz (not both).
1661a23d5eceSKris Buschelman    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1662a23d5eceSKris Buschelman    allocation.  For additional details, see the users manual chapter on
1663a23d5eceSKris Buschelman    matrices.
1664a23d5eceSKris Buschelman 
166549a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
166649a6f317SBarry Smith 
166749a6f317SBarry Smith 
1668a23d5eceSKris Buschelman .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1669a23d5eceSKris Buschelman @*/
1670be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqSBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
167113f74950SBarry Smith {
167213f74950SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
1673a23d5eceSKris Buschelman 
1674a23d5eceSKris Buschelman   PetscFunctionBegin;
1675a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqSBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1676a23d5eceSKris Buschelman   if (f) {
1677a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
1678a23d5eceSKris Buschelman   }
1679a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1680a23d5eceSKris Buschelman }
168149b5e25fSSatish Balay 
16824a2ae208SSatish Balay #undef __FUNCT__
16834a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqSBAIJ"
1684c464158bSHong Zhang /*@C
1685c464158bSHong Zhang    MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in block AIJ (block
1686c464158bSHong Zhang    compressed row) format.  For good matrix assembly performance the
1687c464158bSHong Zhang    user should preallocate the matrix storage by setting the parameter nz
1688c464158bSHong Zhang    (or the array nnz).  By setting these parameters accurately, performance
1689c464158bSHong Zhang    during matrix assembly can be increased by more than a factor of 50.
169049b5e25fSSatish Balay 
1691c464158bSHong Zhang    Collective on MPI_Comm
1692c464158bSHong Zhang 
1693c464158bSHong Zhang    Input Parameters:
1694c464158bSHong Zhang +  comm - MPI communicator, set to PETSC_COMM_SELF
1695c464158bSHong Zhang .  bs - size of block
1696c464158bSHong Zhang .  m - number of rows, or number of columns
1697c464158bSHong Zhang .  nz - number of block nonzeros per block row (same for all rows)
1698744e8345SSatish Balay -  nnz - array containing the number of block nonzeros in the upper triangular plus
1699744e8345SSatish Balay          diagonal portion of each block (possibly different for each block row) or PETSC_NULL
1700c464158bSHong Zhang 
1701c464158bSHong Zhang    Output Parameter:
1702c464158bSHong Zhang .  A - the symmetric matrix
1703c464158bSHong Zhang 
1704c464158bSHong Zhang    Options Database Keys:
1705c464158bSHong Zhang .   -mat_no_unroll - uses code that does not unroll the loops in the
1706c464158bSHong Zhang                      block calculations (much slower)
1707c464158bSHong Zhang .    -mat_block_size - size of the blocks to use
1708c464158bSHong Zhang 
1709c464158bSHong Zhang    Level: intermediate
1710c464158bSHong Zhang 
1711c464158bSHong Zhang    Notes:
1712c464158bSHong Zhang 
1713c464158bSHong Zhang    Specify the preallocated storage with either nz or nnz (not both).
1714c464158bSHong Zhang    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
1715c464158bSHong Zhang    allocation.  For additional details, see the users manual chapter on
1716c464158bSHong Zhang    matrices.
1717c464158bSHong Zhang 
171849a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
171949a6f317SBarry Smith 
1720c464158bSHong Zhang .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPISBAIJ()
1721c464158bSHong Zhang @*/
1722be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
1723c464158bSHong Zhang {
1724dfbe8321SBarry Smith   PetscErrorCode ierr;
1725c464158bSHong Zhang 
1726c464158bSHong Zhang   PetscFunctionBegin;
1727c464158bSHong Zhang   ierr = MatCreate(comm,m,n,m,n,A);CHKERRQ(ierr);
1728c464158bSHong Zhang   ierr = MatSetType(*A,MATSEQSBAIJ);CHKERRQ(ierr);
1729*ab93d7beSBarry Smith   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
173049b5e25fSSatish Balay   PetscFunctionReturn(0);
173149b5e25fSSatish Balay }
173249b5e25fSSatish Balay 
17334a2ae208SSatish Balay #undef __FUNCT__
17344a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqSBAIJ"
1735dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
173649b5e25fSSatish Balay {
173749b5e25fSSatish Balay   Mat            C;
173849b5e25fSSatish Balay   Mat_SeqSBAIJ   *c,*a = (Mat_SeqSBAIJ*)A->data;
17396849ba73SBarry Smith   PetscErrorCode ierr;
174013f74950SBarry Smith   PetscInt       i,len,mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
174149b5e25fSSatish Balay 
174249b5e25fSSatish Balay   PetscFunctionBegin;
174329bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
174449b5e25fSSatish Balay 
174549b5e25fSSatish Balay   *B = 0;
1746692f9cbeSHong Zhang   ierr = MatCreate(A->comm,A->m,A->n,A->m,A->n,&C);CHKERRQ(ierr);
1747be5d1d56SKris Buschelman   ierr = MatSetType(C,A->type_name);CHKERRQ(ierr);
17481d5dac46SHong Zhang   ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
1749692f9cbeSHong Zhang   c    = (Mat_SeqSBAIJ*)C->data;
1750692f9cbeSHong Zhang 
1751273d9f13SBarry Smith   C->preallocated   = PETSC_TRUE;
175249b5e25fSSatish Balay   C->factor         = A->factor;
175349b5e25fSSatish Balay   c->row            = 0;
175449b5e25fSSatish Balay   c->icol           = 0;
175549b5e25fSSatish Balay   c->saved_values   = 0;
175649b5e25fSSatish Balay   c->keepzeroedrows = a->keepzeroedrows;
175749b5e25fSSatish Balay   C->assembled      = PETSC_TRUE;
175849b5e25fSSatish Balay 
175982327fa8SHong Zhang   C->M    = A->M;
176082327fa8SHong Zhang   C->N    = A->N;
1761521d7252SBarry Smith   C->bs   = A->bs;
176249b5e25fSSatish Balay   c->bs2  = a->bs2;
176349b5e25fSSatish Balay   c->mbs  = a->mbs;
176449b5e25fSSatish Balay   c->nbs  = a->nbs;
176549b5e25fSSatish Balay 
176613f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->imax);CHKERRQ(ierr);
176713f74950SBarry Smith   ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->ilen);CHKERRQ(ierr);
176849b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
176949b5e25fSSatish Balay     c->imax[i] = a->imax[i];
177049b5e25fSSatish Balay     c->ilen[i] = a->ilen[i];
177149b5e25fSSatish Balay   }
177249b5e25fSSatish Balay 
177349b5e25fSSatish Balay   /* allocate the matrix space */
1774a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
177549b5e25fSSatish Balay   c->singlemalloc = PETSC_TRUE;
177613f74950SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
177749b5e25fSSatish Balay   if (mbs > 0) {
177813f74950SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
177949b5e25fSSatish Balay     if (cpvalues == MAT_COPY_VALUES) {
178049b5e25fSSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
178149b5e25fSSatish Balay     } else {
178249b5e25fSSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
178349b5e25fSSatish Balay     }
178449b5e25fSSatish Balay   }
178549b5e25fSSatish Balay 
178652e6d16bSBarry Smith   ierr = PetscLogObjectMemory(C,len+2*(mbs+1)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_SeqSBAIJ));CHKERRQ(ierr);
178749b5e25fSSatish Balay   c->sorted      = a->sorted;
178849b5e25fSSatish Balay   c->roworiented = a->roworiented;
178949b5e25fSSatish Balay   c->nonew       = a->nonew;
179049b5e25fSSatish Balay 
179149b5e25fSSatish Balay   if (a->diag) {
179213f74950SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
179352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
179449b5e25fSSatish Balay     for (i=0; i<mbs; i++) {
179549b5e25fSSatish Balay       c->diag[i] = a->diag[i];
179649b5e25fSSatish Balay     }
179749b5e25fSSatish Balay   } else c->diag        = 0;
17986c6c5352SBarry Smith   c->nz               = a->nz;
17996c6c5352SBarry Smith   c->maxnz            = a->maxnz;
180049b5e25fSSatish Balay   c->solve_work         = 0;
180149b5e25fSSatish Balay   c->mult_work          = 0;
180249b5e25fSSatish Balay   *B = C;
1803b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(A->qlist,&C->qlist);CHKERRQ(ierr);
180449b5e25fSSatish Balay   PetscFunctionReturn(0);
180549b5e25fSSatish Balay }
180649b5e25fSSatish Balay 
18074a2ae208SSatish Balay #undef __FUNCT__
18084a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqSBAIJ"
1809dfbe8321SBarry Smith PetscErrorCode MatLoad_SeqSBAIJ(PetscViewer viewer,const MatType type,Mat *A)
181049b5e25fSSatish Balay {
181149b5e25fSSatish Balay   Mat_SeqSBAIJ   *a;
181249b5e25fSSatish Balay   Mat            B;
18136849ba73SBarry Smith   PetscErrorCode ierr;
181413f74950SBarry Smith   int            fd;
181513f74950SBarry Smith   PetscMPIInt    size;
181613f74950SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
181713f74950SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*s_browlengths,maskcount;
181813f74950SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
181913f74950SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
182087828ca2SBarry Smith   PetscScalar    *aa;
182149b5e25fSSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
182249b5e25fSSatish Balay 
182349b5e25fSSatish Balay   PetscFunctionBegin;
1824b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
182549b5e25fSSatish Balay   bs2  = bs*bs;
182649b5e25fSSatish Balay 
182749b5e25fSSatish Balay   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
182829bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
1829b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
183049b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
1831552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
183249b5e25fSSatish Balay   M = header[1]; N = header[2]; nz = header[3];
183349b5e25fSSatish Balay 
183449b5e25fSSatish Balay   if (header[3] < 0) {
183529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqSBAIJ");
183649b5e25fSSatish Balay   }
183749b5e25fSSatish Balay 
183829bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
183949b5e25fSSatish Balay 
184049b5e25fSSatish Balay   /*
184149b5e25fSSatish Balay      This code adds extra rows to make sure the number of rows is
184249b5e25fSSatish Balay     divisible by the blocksize
184349b5e25fSSatish Balay   */
184449b5e25fSSatish Balay   mbs        = M/bs;
184549b5e25fSSatish Balay   extra_rows = bs - M + bs*(mbs);
184649b5e25fSSatish Balay   if (extra_rows == bs) extra_rows = 0;
184749b5e25fSSatish Balay   else                  mbs++;
184849b5e25fSSatish Balay   if (extra_rows) {
184963ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_SeqSBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
185049b5e25fSSatish Balay   }
185149b5e25fSSatish Balay 
185249b5e25fSSatish Balay   /* read in row lengths */
185313f74950SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
185449b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
185549b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
185649b5e25fSSatish Balay 
185749b5e25fSSatish Balay   /* read in column indices */
185813f74950SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
185949b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
186049b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
186149b5e25fSSatish Balay 
186249b5e25fSSatish Balay   /* loop over row lengths determining block row lengths */
186313f74950SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&s_browlengths);CHKERRQ(ierr);
186413f74950SBarry Smith   ierr     = PetscMemzero(s_browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
186513f74950SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
186613f74950SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
186749b5e25fSSatish Balay   masked   = mask + mbs;
186849b5e25fSSatish Balay   rowcount = 0; nzcount = 0;
186949b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
187049b5e25fSSatish Balay     nmask = 0;
187149b5e25fSSatish Balay     for (j=0; j<bs; j++) {
187249b5e25fSSatish Balay       kmax = rowlengths[rowcount];
187349b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
18742d703238SHong Zhang         tmp = jj[nzcount++]/bs;   /* block col. index */
187503630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) {masked[nmask++] = tmp; mask[tmp] = 1;}
187649b5e25fSSatish Balay       }
187749b5e25fSSatish Balay       rowcount++;
187849b5e25fSSatish Balay     }
1879574b2666SHong Zhang     s_browlengths[i] += nmask;
1880574b2666SHong Zhang 
188149b5e25fSSatish Balay     /* zero out the mask elements we set */
188249b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
188349b5e25fSSatish Balay   }
188449b5e25fSSatish Balay 
188549b5e25fSSatish Balay   /* create our matrix */
18869abb65ffSKris Buschelman   ierr = MatCreate(comm,M+extra_rows,N+extra_rows,M+extra_rows,N+extra_rows,&B);CHKERRQ(ierr);
18879abb65ffSKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
1888*ab93d7beSBarry Smith   ierr = MatSeqSBAIJSetPreallocation_SeqSBAIJ(B,bs,0,s_browlengths);CHKERRQ(ierr);
188949b5e25fSSatish Balay   a = (Mat_SeqSBAIJ*)B->data;
189049b5e25fSSatish Balay 
189149b5e25fSSatish Balay   /* set matrix "i" values */
189249b5e25fSSatish Balay   a->i[0] = 0;
189349b5e25fSSatish Balay   for (i=1; i<= mbs; i++) {
1894574b2666SHong Zhang     a->i[i]      = a->i[i-1] + s_browlengths[i-1];
1895574b2666SHong Zhang     a->ilen[i-1] = s_browlengths[i-1];
189649b5e25fSSatish Balay   }
18976c6c5352SBarry Smith   a->nz = a->i[mbs];
189849b5e25fSSatish Balay 
189949b5e25fSSatish Balay   /* read in nonzero values */
190087828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
190149b5e25fSSatish Balay   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
190249b5e25fSSatish Balay   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
190349b5e25fSSatish Balay 
190449b5e25fSSatish Balay   /* set "a" and "j" values into matrix */
190549b5e25fSSatish Balay   nzcount = 0; jcount = 0;
190649b5e25fSSatish Balay   for (i=0; i<mbs; i++) {
190749b5e25fSSatish Balay     nzcountb = nzcount;
190849b5e25fSSatish Balay     nmask    = 0;
190949b5e25fSSatish Balay     for (j=0; j<bs; j++) {
191049b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
191149b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
19122d703238SHong Zhang         tmp = jj[nzcount++]/bs; /* block col. index */
191303630b6eSHong Zhang         if (!mask[tmp] && tmp >= i) { masked[nmask++] = tmp; mask[tmp] = 1;}
19142d703238SHong Zhang       }
19152d703238SHong Zhang     }
19162d703238SHong Zhang     /* sort the masked values */
19172d703238SHong Zhang     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
19182d703238SHong Zhang 
19192d703238SHong Zhang     /* set "j" values into matrix */
19202d703238SHong Zhang     maskcount = 1;
19212d703238SHong Zhang     for (j=0; j<nmask; j++) {
192249b5e25fSSatish Balay       a->j[jcount++]  = masked[j];
192349b5e25fSSatish Balay       mask[masked[j]] = maskcount++;
192449b5e25fSSatish Balay     }
1925574b2666SHong Zhang 
192649b5e25fSSatish Balay     /* set "a" values into matrix */
192749b5e25fSSatish Balay     ishift = bs2*a->i[i];
192849b5e25fSSatish Balay     for (j=0; j<bs; j++) {
192949b5e25fSSatish Balay       kmax = rowlengths[i*bs+j];
193049b5e25fSSatish Balay       for (k=0; k<kmax; k++) {
1931574b2666SHong Zhang         tmp       = jj[nzcountb]/bs ; /* block col. index */
1932574b2666SHong Zhang         if (tmp >= i){
193349b5e25fSSatish Balay           block     = mask[tmp] - 1;
193449b5e25fSSatish Balay           point     = jj[nzcountb] - bs*tmp;
193549b5e25fSSatish Balay           idx       = ishift + bs2*block + j + bs*point;
1936574b2666SHong Zhang           a->a[idx] = aa[nzcountb];
1937574b2666SHong Zhang         }
1938574b2666SHong Zhang         nzcountb++;
193949b5e25fSSatish Balay       }
194049b5e25fSSatish Balay     }
194149b5e25fSSatish Balay     /* zero out the mask elements we set */
194249b5e25fSSatish Balay     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
194349b5e25fSSatish Balay   }
19446c6c5352SBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
194549b5e25fSSatish Balay 
194649b5e25fSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1947574b2666SHong Zhang   ierr = PetscFree(s_browlengths);CHKERRQ(ierr);
194849b5e25fSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
194949b5e25fSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
195049b5e25fSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
195149b5e25fSSatish Balay 
19529abb65ffSKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19539abb65ffSKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
195449b5e25fSSatish Balay   ierr = MatView_Private(B);CHKERRQ(ierr);
19559abb65ffSKris Buschelman   *A = B;
195649b5e25fSSatish Balay   PetscFunctionReturn(0);
195749b5e25fSSatish Balay }
1958574b2666SHong Zhang 
1959d06b337dSHong Zhang #undef __FUNCT__
1960d06b337dSHong Zhang #define __FUNCT__ "MatRelax_SeqSBAIJ"
196113f74950SBarry Smith PetscErrorCode MatRelax_SeqSBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1962d06b337dSHong Zhang {
1963d06b337dSHong Zhang   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data;
1964d06b337dSHong Zhang   MatScalar      *aa=a->a,*v,*v1;
1965d06b337dSHong Zhang   PetscScalar    *x,*b,*t,sum,d;
19666849ba73SBarry Smith   PetscErrorCode ierr;
1967521d7252SBarry Smith   PetscInt       m=a->mbs,bs=A->bs,*ai=a->i,*aj=a->j;
1968521d7252SBarry Smith   PetscInt       nz,nz1,*vj,*vj1,i;
1969d06b337dSHong Zhang 
1970d06b337dSHong Zhang   PetscFunctionBegin;
1971b965ef7fSBarry Smith   its = its*lits;
197277431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1973d06b337dSHong Zhang 
1974d06b337dSHong Zhang   if (bs > 1)
1975d06b337dSHong Zhang     SETERRQ(PETSC_ERR_SUP,"SSOR for block size > 1 is not yet implemented");
1976d06b337dSHong Zhang 
19771ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1978d06b337dSHong Zhang   if (xx != bb) {
19791ebc52fbSHong Zhang     ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
1980d06b337dSHong Zhang   } else {
1981d06b337dSHong Zhang     b = x;
1982d06b337dSHong Zhang   }
1983d06b337dSHong Zhang 
1984d06b337dSHong Zhang   ierr = PetscMalloc(m*sizeof(PetscScalar),&t);CHKERRQ(ierr);
1985d06b337dSHong Zhang 
1986d06b337dSHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
19872798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1988d06b337dSHong Zhang       for (i=0; i<m; i++)
1989d06b337dSHong Zhang         t[i] = b[i];
1990d06b337dSHong Zhang 
1991d06b337dSHong Zhang       for (i=0; i<m; i++){
199244706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
1993d06b337dSHong Zhang         v  = aa + ai[i] + 1;
1994d06b337dSHong Zhang         vj = aj + ai[i] + 1;
1995d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
1996d06b337dSHong Zhang         x[i] = omega*t[i]/d;
1997d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++); /* update rhs */
1998efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
1999d06b337dSHong Zhang       }
2000d06b337dSHong Zhang     }
2001d06b337dSHong Zhang 
20022798e883SHong Zhang     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
2003d06b337dSHong Zhang       for (i=0; i<m; i++)
2004d06b337dSHong Zhang         t[i] = b[i];
2005d06b337dSHong Zhang 
2006d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2007d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2008d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2009d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2010d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2011efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2012d06b337dSHong Zhang       }
2013d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2014d06b337dSHong Zhang         d  = *(aa + ai[i]);
2015d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2016d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2017d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2018d06b337dSHong Zhang         sum = t[i];
2019d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
2020efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2021d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2022d06b337dSHong Zhang       }
2023d06b337dSHong Zhang     }
2024d06b337dSHong Zhang     its--;
2025d06b337dSHong Zhang   }
2026d06b337dSHong Zhang 
2027d06b337dSHong Zhang   while (its--) {
202844706875SHong Zhang     /*
202944706875SHong Zhang        forward sweep:
203044706875SHong Zhang        for i=0,...,m-1:
203144706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
203244706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
203344706875SHong Zhang          b      = b - x[i]*U^T(i,:);
2034d06b337dSHong Zhang 
203544706875SHong Zhang     */
20362798e883SHong Zhang     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
2037d06b337dSHong Zhang       for (i=0; i<m; i++)
2038d06b337dSHong Zhang         t[i] = b[i];
2039d06b337dSHong Zhang 
2040d06b337dSHong Zhang       for (i=0; i<m; i++){
204144706875SHong Zhang         d  = *(aa + ai[i]);  /* diag[i] */
2042d06b337dSHong Zhang         v  = aa + ai[i] + 1; v1=v;
2043d06b337dSHong Zhang         vj = aj + ai[i] + 1; vj1=vj;
2044d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1; nz1=nz;
2045d06b337dSHong Zhang         sum = t[i];
2046d06b337dSHong Zhang         while (nz1--) sum -= (*v1++)*x[*vj1++];
2047d06b337dSHong Zhang         x[i] = (1-omega)*x[i] + omega*sum/d;
2048d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2049efee365bSSatish Balay         ierr = PetscLogFlops(4*nz-2);CHKERRQ(ierr);
2050d06b337dSHong Zhang       }
2051d06b337dSHong Zhang     }
2052d06b337dSHong Zhang 
20532798e883SHong Zhang   if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
205444706875SHong Zhang       /*
205544706875SHong Zhang        backward sweep:
205644706875SHong Zhang        b = b - x[i]*U^T(i,:), i=0,...,n-2
205744706875SHong Zhang        for i=m-1,...,0:
205844706875SHong Zhang          sum[i] = (b[i] - U(i,:)x )/d[i];
205944706875SHong Zhang          x[i]   = (1-omega)x[i] + omega*sum[i];
206044706875SHong Zhang       */
2061d06b337dSHong Zhang       for (i=0; i<m; i++)
2062d06b337dSHong Zhang         t[i] = b[i];
2063d06b337dSHong Zhang 
2064d06b337dSHong Zhang       for (i=0; i<m-1; i++){  /* update rhs */
2065d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2066d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2067d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2068d06b337dSHong Zhang         while (nz--) t[*vj++] -= x[i]*(*v++);
2069efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2070d06b337dSHong Zhang       }
2071d06b337dSHong Zhang       for (i=m-1; i>=0; i--){
2072d06b337dSHong Zhang         d  = *(aa + ai[i]);
2073d06b337dSHong Zhang         v  = aa + ai[i] + 1;
2074d06b337dSHong Zhang         vj = aj + ai[i] + 1;
2075d06b337dSHong Zhang         nz = ai[i+1] - ai[i] - 1;
2076d06b337dSHong Zhang         sum = t[i];
2077d06b337dSHong Zhang         while (nz--) sum -= x[*vj++]*(*v++);
2078efee365bSSatish Balay         ierr = PetscLogFlops(2*nz-1);CHKERRQ(ierr);
2079d06b337dSHong Zhang         x[i] =   (1-omega)*x[i] + omega*sum/d;
2080d06b337dSHong Zhang       }
2081d06b337dSHong Zhang     }
2082d06b337dSHong Zhang   }
2083d06b337dSHong Zhang 
2084d06b337dSHong Zhang   ierr = PetscFree(t);CHKERRQ(ierr);
20851ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2086d06b337dSHong Zhang   if (bb != xx) {
20871ebc52fbSHong Zhang     ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
2088d06b337dSHong Zhang   }
2089d06b337dSHong Zhang   PetscFunctionReturn(0);
2090d06b337dSHong Zhang }
2091d06b337dSHong Zhang 
2092d06b337dSHong Zhang 
2093d06b337dSHong Zhang 
2094d06b337dSHong Zhang 
209549b5e25fSSatish Balay 
209649b5e25fSSatish Balay 
2097