xref: /petsc/src/mat/impls/sbaij/seq/sbaij.c (revision eede4a3f727160250ce1ec46327afa549cd90f45)

/*
    Defines the basic matrix operations for the SBAIJ (compressed row)
  matrix storage format.
*/
#include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/
#include <../src/mat/impls/sbaij/seq/sbaij.h>
#include <petscblaslapack.h>

#include <../src/mat/impls/sbaij/seq/relax.h>
#define USESHORT
#include <../src/mat/impls/sbaij/seq/relax.h>

/* defines MatSetValues_Seq_Hash(), MatAssemblyEnd_Seq_Hash(), MatSetUp_Seq_Hash() */
#define TYPE SBAIJ
#define TYPE_SBAIJ
#define TYPE_BS
#include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h"
#undef TYPE_BS
#define TYPE_BS _BS
#define TYPE_BS_ON
#include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h"
#undef TYPE_BS
#undef TYPE_SBAIJ
#include "../src/mat/impls/aij/seq/seqhashmat.h"
#undef TYPE
#undef TYPE_BS_ON

#if defined(PETSC_HAVE_ELEMENTAL)
PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
#endif
#if defined(PETSC_HAVE_SCALAPACK)
PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
#endif
PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat, MatType, MatReuse, Mat *);

/*
     Checks for missing diagonals
*/
static PetscErrorCode MatMissingDiagonal_SeqSBAIJ(Mat A, PetscBool *missing, PetscInt *dd)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt     *diag, *ii = a->i, i;

  PetscFunctionBegin;
  PetscCall(MatMarkDiagonal_SeqSBAIJ(A));
  *missing = PETSC_FALSE;
  if (A->rmap->n > 0 && !ii) {
    *missing = PETSC_TRUE;
    if (dd) *dd = 0;
    PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n"));
  } else {
    diag = a->diag;
    for (i = 0; i < a->mbs; i++) {
      if (diag[i] >= ii[i + 1]) {
        *missing = PETSC_TRUE;
        if (dd) *dd = i;
        break;
      }
    }
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatMarkDiagonal_SeqSBAIJ(Mat A)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt      i, j;

  PetscFunctionBegin;
  if (!a->diag) {
    PetscCall(PetscMalloc1(a->mbs, &a->diag));
    a->free_diag = PETSC_TRUE;
  }
  for (i = 0; i < a->mbs; i++) {
    a->diag[i] = a->i[i + 1];
    for (j = a->i[i]; j < a->i[i + 1]; j++) {
      if (a->j[j] == i) {
        a->diag[i] = j;
        break;
      }
    }
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *inia[], const PetscInt *inja[], PetscBool *done)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt      i, j, n = a->mbs, nz = a->i[n], *tia, *tja, bs = A->rmap->bs, k, l, cnt;
  PetscInt    **ia = (PetscInt **)inia, **ja = (PetscInt **)inja;

  PetscFunctionBegin;
  *nn = n;
  if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
  if (symmetric) {
    PetscCall(MatToSymmetricIJ_SeqAIJ(n, a->i, a->j, PETSC_FALSE, 0, 0, &tia, &tja));
    nz = tia[n];
  } else {
    tia = a->i;
    tja = a->j;
  }

  if (!blockcompressed && bs > 1) {
    (*nn) *= bs;
    /* malloc & create the natural set of indices */
    PetscCall(PetscMalloc1((n + 1) * bs, ia));
    if (n) {
      (*ia)[0] = oshift;
      for (j = 1; j < bs; j++) (*ia)[j] = (tia[1] - tia[0]) * bs + (*ia)[j - 1];
    }

    for (i = 1; i < n; i++) {
      (*ia)[i * bs] = (tia[i] - tia[i - 1]) * bs + (*ia)[i * bs - 1];
      for (j = 1; j < bs; j++) (*ia)[i * bs + j] = (tia[i + 1] - tia[i]) * bs + (*ia)[i * bs + j - 1];
    }
    if (n) (*ia)[n * bs] = (tia[n] - tia[n - 1]) * bs + (*ia)[n * bs - 1];

    if (inja) {
      PetscCall(PetscMalloc1(nz * bs * bs, ja));
      cnt = 0;
      for (i = 0; i < n; i++) {
        for (j = 0; j < bs; j++) {
          for (k = tia[i]; k < tia[i + 1]; k++) {
            for (l = 0; l < bs; l++) (*ja)[cnt++] = bs * tja[k] + l;
          }
        }
      }
    }

    if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
      PetscCall(PetscFree(tia));
      PetscCall(PetscFree(tja));
    }
  } else if (oshift == 1) {
    if (symmetric) {
      nz = tia[A->rmap->n / bs];
      /*  add 1 to i and j indices */
      for (i = 0; i < A->rmap->n / bs + 1; i++) tia[i] = tia[i] + 1;
      *ia = tia;
      if (ja) {
        for (i = 0; i < nz; i++) tja[i] = tja[i] + 1;
        *ja = tja;
      }
    } else {
      nz = a->i[A->rmap->n / bs];
      /* malloc space and  add 1 to i and j indices */
      PetscCall(PetscMalloc1(A->rmap->n / bs + 1, ia));
      for (i = 0; i < A->rmap->n / bs + 1; i++) (*ia)[i] = a->i[i] + 1;
      if (ja) {
        PetscCall(PetscMalloc1(nz, ja));
        for (i = 0; i < nz; i++) (*ja)[i] = a->j[i] + 1;
      }
    }
  } else {
    *ia = tia;
    if (ja) *ja = tja;
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
{
  PetscFunctionBegin;
  if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
  if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
    PetscCall(PetscFree(*ia));
    if (ja) PetscCall(PetscFree(*ja));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

  PetscFunctionBegin;
  if (A->hash_active) {
    PetscInt bs;
    A->ops[0] = a->cops;
    PetscCall(PetscHMapIJVDestroy(&a->ht));
    PetscCall(MatGetBlockSize(A, &bs));
    if (bs > 1) PetscCall(PetscHSetIJDestroy(&a->bht));
    PetscCall(PetscFree(a->dnz));
    PetscCall(PetscFree(a->bdnz));
    A->hash_active = PETSC_FALSE;
  }
  PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->N, a->nz));
  PetscCall(MatSeqXAIJFreeAIJ(A, &a->a, &a->j, &a->i));
  if (a->free_diag) PetscCall(PetscFree(a->diag));
  PetscCall(ISDestroy(&a->row));
  PetscCall(ISDestroy(&a->col));
  PetscCall(ISDestroy(&a->icol));
  PetscCall(PetscFree(a->idiag));
  PetscCall(PetscFree(a->inode.size));
  if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax, a->ilen));
  PetscCall(PetscFree(a->solve_work));
  PetscCall(PetscFree(a->sor_work));
  PetscCall(PetscFree(a->solves_work));
  PetscCall(PetscFree(a->mult_work));
  PetscCall(PetscFree(a->saved_values));
  if (a->free_jshort) PetscCall(PetscFree(a->jshort));
  PetscCall(PetscFree(a->inew));
  PetscCall(MatDestroy(&a->parent));
  PetscCall(PetscFree(A->data));

  PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJGetArray_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJRestoreArray_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJSetColumnIndices_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_seqaij_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_seqbaij_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJSetPreallocation_C", NULL));
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJSetPreallocationCSR_C", NULL));
#if defined(PETSC_HAVE_ELEMENTAL)
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_elemental_C", NULL));
#endif
#if defined(PETSC_HAVE_SCALAPACK)
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_scalapack_C", NULL));
#endif
  PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatSetOption_SeqSBAIJ(Mat A, MatOption op, PetscBool flg)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
#if defined(PETSC_USE_COMPLEX)
  PetscInt bs;
#endif

  PetscFunctionBegin;
#if defined(PETSC_USE_COMPLEX)
  PetscCall(MatGetBlockSize(A, &bs));
#endif
  switch (op) {
  case MAT_ROW_ORIENTED:
    a->roworiented = flg;
    break;
  case MAT_KEEP_NONZERO_PATTERN:
    a->keepnonzeropattern = flg;
    break;
  case MAT_NEW_NONZERO_LOCATIONS:
    a->nonew = (flg ? 0 : 1);
    break;
  case MAT_NEW_NONZERO_LOCATION_ERR:
    a->nonew = (flg ? -1 : 0);
    break;
  case MAT_NEW_NONZERO_ALLOCATION_ERR:
    a->nonew = (flg ? -2 : 0);
    break;
  case MAT_UNUSED_NONZERO_LOCATION_ERR:
    a->nounused = (flg ? -1 : 0);
    break;
  case MAT_FORCE_DIAGONAL_ENTRIES:
  case MAT_IGNORE_OFF_PROC_ENTRIES:
  case MAT_USE_HASH_TABLE:
  case MAT_SORTED_FULL:
    PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
    break;
  case MAT_HERMITIAN:
#if defined(PETSC_USE_COMPLEX)
    if (flg) { /* disable transpose ops */
      PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for Hermitian with block size greater than 1");
      A->ops->multtranspose    = NULL;
      A->ops->multtransposeadd = NULL;
      A->symmetric             = PETSC_BOOL3_FALSE;
    }
#endif
    break;
  case MAT_SYMMETRIC:
  case MAT_SPD:
#if defined(PETSC_USE_COMPLEX)
    if (flg) { /* An hermitian and symmetric matrix has zero imaginary part (restore back transpose ops) */
      A->ops->multtranspose    = A->ops->mult;
      A->ops->multtransposeadd = A->ops->multadd;
    }
#endif
    break;
    /* These options are handled directly by MatSetOption() */
  case MAT_STRUCTURALLY_SYMMETRIC:
  case MAT_SYMMETRY_ETERNAL:
  case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
  case MAT_STRUCTURE_ONLY:
  case MAT_SPD_ETERNAL:
    /* These options are handled directly by MatSetOption() */
    break;
  case MAT_IGNORE_LOWER_TRIANGULAR:
    a->ignore_ltriangular = flg;
    break;
  case MAT_ERROR_LOWER_TRIANGULAR:
    a->ignore_ltriangular = flg;
    break;
  case MAT_GETROW_UPPERTRIANGULAR:
    a->getrow_utriangular = flg;
    break;
  case MAT_SUBMAT_SINGLEIS:
    break;
  default:
    SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatGetRow_SeqSBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

  PetscFunctionBegin;
  PetscCheck(!A || a->getrow_utriangular, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()");

  /* Get the upper triangular part of the row */
  PetscCall(MatGetRow_SeqBAIJ_private(A, row, nz, idx, v, a->i, a->j, a->a));
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
{
  PetscFunctionBegin;
  if (idx) PetscCall(PetscFree(*idx));
  if (v) PetscCall(PetscFree(*v));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

  PetscFunctionBegin;
  a->getrow_utriangular = PETSC_TRUE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

  PetscFunctionBegin;
  a->getrow_utriangular = PETSC_FALSE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatTranspose_SeqSBAIJ(Mat A, MatReuse reuse, Mat *B)
{
  PetscFunctionBegin;
  if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
  if (reuse == MAT_INITIAL_MATRIX) {
    PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
  } else if (reuse == MAT_REUSE_MATRIX) {
    PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A, PetscViewer viewer)
{
  Mat_SeqSBAIJ     *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt          i, j, bs = A->rmap->bs, k, l, bs2 = a->bs2;
  PetscViewerFormat format;
  PetscInt         *diag;
  const char       *matname;

  PetscFunctionBegin;
  PetscCall(PetscViewerGetFormat(viewer, &format));
  if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
    PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
  } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
    Mat aij;

    if (A->factortype && bs > 1) {
      PetscCall(PetscPrintf(PETSC_COMM_SELF, "Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n"));
      PetscFunctionReturn(PETSC_SUCCESS);
    }
    PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &aij));
    if (((PetscObject)A)->name) PetscCall(PetscObjectGetName((PetscObject)A, &matname));
    if (((PetscObject)A)->name) PetscCall(PetscObjectSetName((PetscObject)aij, matname));
    PetscCall(MatView_SeqAIJ(aij, viewer));
    PetscCall(MatDestroy(&aij));
  } else if (format == PETSC_VIEWER_ASCII_COMMON) {
    Mat B;

    PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &B));
    if (((PetscObject)A)->name) PetscCall(PetscObjectGetName((PetscObject)A, &matname));
    if (((PetscObject)A)->name) PetscCall(PetscObjectSetName((PetscObject)B, matname));
    PetscCall(MatView_SeqAIJ(B, viewer));
    PetscCall(MatDestroy(&B));
  } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
    PetscFunctionReturn(PETSC_SUCCESS);
  } else {
    PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
    if (A->factortype) { /* for factored matrix */
      PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "matrix is factored with bs>1. Not implemented yet");

      diag = a->diag;
      for (i = 0; i < a->mbs; i++) { /* for row block i */
        PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
        /* diagonal entry */
#if defined(PETSC_USE_COMPLEX)
        if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) {
          PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", a->j[diag[i]], (double)PetscRealPart(1.0 / a->a[diag[i]]), (double)PetscImaginaryPart(1.0 / a->a[diag[i]])));
        } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) {
          PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", a->j[diag[i]], (double)PetscRealPart(1.0 / a->a[diag[i]]), -(double)PetscImaginaryPart(1.0 / a->a[diag[i]])));
        } else {
          PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->j[diag[i]], (double)PetscRealPart(1.0 / a->a[diag[i]])));
        }
#else
        PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->j[diag[i]], (double)(1.0 / a->a[diag[i]])));
#endif
        /* off-diagonal entries */
        for (k = a->i[i]; k < a->i[i + 1] - 1; k++) {
#if defined(PETSC_USE_COMPLEX)
          if (PetscImaginaryPart(a->a[k]) > 0.0) {
            PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", bs * a->j[k], (double)PetscRealPart(a->a[k]), (double)PetscImaginaryPart(a->a[k])));
          } else if (PetscImaginaryPart(a->a[k]) < 0.0) {
            PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", bs * a->j[k], (double)PetscRealPart(a->a[k]), -(double)PetscImaginaryPart(a->a[k])));
          } else {
            PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k], (double)PetscRealPart(a->a[k])));
          }
#else
          PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->j[k], (double)a->a[k]));
#endif
        }
        PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
      }

    } else {                         /* for non-factored matrix */
      for (i = 0; i < a->mbs; i++) { /* for row block i */
        for (j = 0; j < bs; j++) {   /* for row bs*i + j */
          PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i * bs + j));
          for (k = a->i[i]; k < a->i[i + 1]; k++) { /* for column block */
            for (l = 0; l < bs; l++) {              /* for column */
#if defined(PETSC_USE_COMPLEX)
              if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) > 0.0) {
                PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), (double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
              } else if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) < 0.0) {
                PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), -(double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
              } else {
                PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j])));
              }
#else
              PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)a->a[bs2 * k + l * bs + j]));
#endif
            }
          }
          PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
        }
      }
    }
    PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
  }
  PetscCall(PetscViewerFlush(viewer));
  PetscFunctionReturn(PETSC_SUCCESS);
}

#include <petscdraw.h>
static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw, void *Aa)
{
  Mat           A = (Mat)Aa;
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt      row, i, j, k, l, mbs = a->mbs, color, bs = A->rmap->bs, bs2 = a->bs2;
  PetscReal     xl, yl, xr, yr, x_l, x_r, y_l, y_r;
  MatScalar    *aa;
  PetscViewer   viewer;

  PetscFunctionBegin;
  PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
  PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));

  /* loop over matrix elements drawing boxes */

  PetscDrawCollectiveBegin(draw);
  PetscCall(PetscDrawString(draw, .3 * (xl + xr), .3 * (yl + yr), PETSC_DRAW_BLACK, "symmetric"));
  /* Blue for negative, Cyan for zero and  Red for positive */
  color = PETSC_DRAW_BLUE;
  for (i = 0, row = 0; i < mbs; i++, row += bs) {
    for (j = a->i[i]; j < a->i[i + 1]; j++) {
      y_l = A->rmap->N - row - 1.0;
      y_r = y_l + 1.0;
      x_l = a->j[j] * bs;
      x_r = x_l + 1.0;
      aa  = a->a + j * bs2;
      for (k = 0; k < bs; k++) {
        for (l = 0; l < bs; l++) {
          if (PetscRealPart(*aa++) >= 0.) continue;
          PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
        }
      }
    }
  }
  color = PETSC_DRAW_CYAN;
  for (i = 0, row = 0; i < mbs; i++, row += bs) {
    for (j = a->i[i]; j < a->i[i + 1]; j++) {
      y_l = A->rmap->N - row - 1.0;
      y_r = y_l + 1.0;
      x_l = a->j[j] * bs;
      x_r = x_l + 1.0;
      aa  = a->a + j * bs2;
      for (k = 0; k < bs; k++) {
        for (l = 0; l < bs; l++) {
          if (PetscRealPart(*aa++) != 0.) continue;
          PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
        }
      }
    }
  }
  color = PETSC_DRAW_RED;
  for (i = 0, row = 0; i < mbs; i++, row += bs) {
    for (j = a->i[i]; j < a->i[i + 1]; j++) {
      y_l = A->rmap->N - row - 1.0;
      y_r = y_l + 1.0;
      x_l = a->j[j] * bs;
      x_r = x_l + 1.0;
      aa  = a->a + j * bs2;
      for (k = 0; k < bs; k++) {
        for (l = 0; l < bs; l++) {
          if (PetscRealPart(*aa++) <= 0.) continue;
          PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
        }
      }
    }
  }
  PetscDrawCollectiveEnd(draw);
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A, PetscViewer viewer)
{
  PetscReal xl, yl, xr, yr, w, h;
  PetscDraw draw;
  PetscBool isnull;

  PetscFunctionBegin;
  PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
  PetscCall(PetscDrawIsNull(draw, &isnull));
  if (isnull) PetscFunctionReturn(PETSC_SUCCESS);

  xr = A->rmap->N;
  yr = A->rmap->N;
  h  = yr / 10.0;
  w  = xr / 10.0;
  xr += w;
  yr += h;
  xl = -w;
  yl = -h;
  PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
  PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
  PetscCall(PetscDrawZoom(draw, MatView_SeqSBAIJ_Draw_Zoom, A));
  PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
  PetscCall(PetscDrawSave(draw));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/* Used for both MPIBAIJ and MPISBAIJ matrices */
#define MatView_SeqSBAIJ_Binary MatView_SeqBAIJ_Binary

PetscErrorCode MatView_SeqSBAIJ(Mat A, PetscViewer viewer)
{
  PetscBool iascii, isbinary, isdraw;

  PetscFunctionBegin;
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
  if (iascii) {
    PetscCall(MatView_SeqSBAIJ_ASCII(A, viewer));
  } else if (isbinary) {
    PetscCall(MatView_SeqSBAIJ_Binary(A, viewer));
  } else if (isdraw) {
    PetscCall(MatView_SeqSBAIJ_Draw(A, viewer));
  } else {
    Mat         B;
    const char *matname;
    PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &B));
    if (((PetscObject)A)->name) PetscCall(PetscObjectGetName((PetscObject)A, &matname));
    if (((PetscObject)A)->name) PetscCall(PetscObjectSetName((PetscObject)B, matname));
    PetscCall(MatView(B, viewer));
    PetscCall(MatDestroy(&B));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatGetValues_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt     *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
  PetscInt     *ai = a->i, *ailen = a->ilen;
  PetscInt      brow, bcol, ridx, cidx, bs = A->rmap->bs, bs2 = a->bs2;
  MatScalar    *ap, *aa = a->a;

  PetscFunctionBegin;
  for (k = 0; k < m; k++) { /* loop over rows */
    row  = im[k];
    brow = row / bs;
    if (row < 0) {
      v += n;
      continue;
    } /* negative row */
    PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->N - 1);
    rp   = aj + ai[brow];
    ap   = aa + bs2 * ai[brow];
    nrow = ailen[brow];
    for (l = 0; l < n; l++) { /* loop over columns */
      if (in[l] < 0) {
        v++;
        continue;
      } /* negative column */
      PetscCheck(in[l] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[l], A->cmap->n - 1);
      col  = in[l];
      bcol = col / bs;
      cidx = col % bs;
      ridx = row % bs;
      high = nrow;
      low  = 0; /* assume unsorted */
      while (high - low > 5) {
        t = (low + high) / 2;
        if (rp[t] > bcol) high = t;
        else low = t;
      }
      for (i = low; i < high; i++) {
        if (rp[i] > bcol) break;
        if (rp[i] == bcol) {
          *v++ = ap[bs2 * i + bs * cidx + ridx];
          goto finished;
        }
      }
      *v++ = 0.0;
    finished:;
    }
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatPermute_SeqSBAIJ(Mat A, IS rowp, IS colp, Mat *B)
{
  Mat C;

  PetscFunctionBegin;
  PetscCall(MatConvert(A, MATSEQBAIJ, MAT_INITIAL_MATRIX, &C));
  PetscCall(MatPermute(C, rowp, colp, B));
  PetscCall(MatDestroy(&C));
  if (rowp == colp) PetscCall(MatConvert(*B, MATSEQSBAIJ, MAT_INPLACE_MATRIX, B));
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
{
  Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt          *rp, k, low, high, t, ii, jj, row, nrow, i, col, l, rmax, N, lastcol = -1;
  PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
  PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs, stepval;
  PetscBool          roworiented = a->roworiented;
  const PetscScalar *value       = v;
  MatScalar         *ap, *aa = a->a, *bap;

  PetscFunctionBegin;
  if (roworiented) stepval = (n - 1) * bs;
  else stepval = (m - 1) * bs;

  for (k = 0; k < m; k++) { /* loop over added rows */
    row = im[k];
    if (row < 0) continue;
    PetscCheck(row < a->mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block index row too large %" PetscInt_FMT " max %" PetscInt_FMT, row, a->mbs - 1);
    rp   = aj + ai[row];
    ap   = aa + bs2 * ai[row];
    rmax = imax[row];
    nrow = ailen[row];
    low  = 0;
    high = nrow;
    for (l = 0; l < n; l++) { /* loop over added columns */
      if (in[l] < 0) continue;
      col = in[l];
      PetscCheck(col < a->nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block index column too large %" PetscInt_FMT " max %" PetscInt_FMT, col, a->nbs - 1);
      if (col < row) {
        if (a->ignore_ltriangular) continue; /* ignore lower triangular block */
        else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
      }
      if (roworiented) value = v + k * (stepval + bs) * bs + l * bs;
      else value = v + l * (stepval + bs) * bs + k * bs;

      if (col <= lastcol) low = 0;
      else high = nrow;

      lastcol = col;
      while (high - low > 7) {
        t = (low + high) / 2;
        if (rp[t] > col) high = t;
        else low = t;
      }
      for (i = low; i < high; i++) {
        if (rp[i] > col) break;
        if (rp[i] == col) {
          bap = ap + bs2 * i;
          if (roworiented) {
            if (is == ADD_VALUES) {
              for (ii = 0; ii < bs; ii++, value += stepval) {
                for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
              }
            } else {
              for (ii = 0; ii < bs; ii++, value += stepval) {
                for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
              }
            }
          } else {
            if (is == ADD_VALUES) {
              for (ii = 0; ii < bs; ii++, value += stepval) {
                for (jj = 0; jj < bs; jj++) *bap++ += *value++;
              }
            } else {
              for (ii = 0; ii < bs; ii++, value += stepval) {
                for (jj = 0; jj < bs; jj++) *bap++ = *value++;
              }
            }
          }
          goto noinsert2;
        }
      }
      if (nonew == 1) goto noinsert2;
      PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
      MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
      N = nrow++ - 1;
      high++;
      /* shift up all the later entries in this row */
      PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
      PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
      PetscCall(PetscArrayzero(ap + bs2 * i, bs2));
      rp[i] = col;
      bap   = ap + bs2 * i;
      if (roworiented) {
        for (ii = 0; ii < bs; ii++, value += stepval) {
          for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
        }
      } else {
        for (ii = 0; ii < bs; ii++, value += stepval) {
          for (jj = 0; jj < bs; jj++) *bap++ = *value++;
        }
      }
    noinsert2:;
      low = i;
    }
    ailen[row] = nrow;
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A, MatAssemblyType mode)
{
  Mat_SeqSBAIJ *a      = (Mat_SeqSBAIJ *)A->data;
  PetscInt      fshift = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax;
  PetscInt      m = A->rmap->N, *ip, N, *ailen = a->ilen;
  PetscInt      mbs = a->mbs, bs2 = a->bs2, rmax = 0;
  MatScalar    *aa = a->a, *ap;

  PetscFunctionBegin;
  if (mode == MAT_FLUSH_ASSEMBLY || (A->was_assembled && A->ass_nonzerostate == A->nonzerostate)) PetscFunctionReturn(PETSC_SUCCESS);

  if (m) rmax = ailen[0];
  for (i = 1; i < mbs; i++) {
    /* move each row back by the amount of empty slots (fshift) before it*/
    fshift += imax[i - 1] - ailen[i - 1];
    rmax = PetscMax(rmax, ailen[i]);
    if (fshift) {
      ip = aj + ai[i];
      ap = aa + bs2 * ai[i];
      N  = ailen[i];
      PetscCall(PetscArraymove(ip - fshift, ip, N));
      PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2 * N));
    }
    ai[i] = ai[i - 1] + ailen[i - 1];
  }
  if (mbs) {
    fshift += imax[mbs - 1] - ailen[mbs - 1];
    ai[mbs] = ai[mbs - 1] + ailen[mbs - 1];
  }
  /* reset ilen and imax for each row */
  for (i = 0; i < mbs; i++) ailen[i] = imax[i] = ai[i + 1] - ai[i];
  a->nz = ai[mbs];

  /* diagonals may have moved, reset it */
  if (a->diag) PetscCall(PetscArraycpy(a->diag, ai, mbs));
  PetscCheck(!fshift || a->nounused != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift * bs2);

  PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n", m, A->rmap->N, A->rmap->bs, fshift * bs2, a->nz * bs2));
  PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues is %" PetscInt_FMT "\n", a->reallocs));
  PetscCall(PetscInfo(A, "Most nonzeros blocks in any row is %" PetscInt_FMT "\n", rmax));

  A->info.mallocs += a->reallocs;
  a->reallocs         = 0;
  A->info.nz_unneeded = (PetscReal)fshift * bs2;
  a->idiagvalid       = PETSC_FALSE;
  a->rmax             = rmax;

  if (A->cmap->n < 65536 && A->cmap->bs == 1) {
    if (a->jshort && a->free_jshort) {
      /* when matrix data structure is changed, previous jshort must be replaced */
      PetscCall(PetscFree(a->jshort));
    }
    PetscCall(PetscMalloc1(a->i[A->rmap->n], &a->jshort));
    for (i = 0; i < a->i[A->rmap->n]; i++) a->jshort[i] = a->j[i];
    A->ops->mult   = MatMult_SeqSBAIJ_1_ushort;
    A->ops->sor    = MatSOR_SeqSBAIJ_ushort;
    a->free_jshort = PETSC_TRUE;
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

/* Only add/insert a(i,j) with i<=j (blocks).
   Any a(i,j) with i>j input by user is ignored.
*/

PetscErrorCode MatSetValues_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt     *rp, k, low, high, t, ii, row, nrow, i, col, l, rmax, N, lastcol = -1;
  PetscInt     *imax = a->imax, *ai = a->i, *ailen = a->ilen, roworiented = a->roworiented;
  PetscInt     *aj = a->j, nonew = a->nonew, bs = A->rmap->bs, brow, bcol;
  PetscInt      ridx, cidx, bs2                 = a->bs2;
  MatScalar    *ap, value, *aa                  = a->a, *bap;

  PetscFunctionBegin;
  for (k = 0; k < m; k++) { /* loop over added rows */
    row  = im[k];           /* row number */
    brow = row / bs;        /* block row number */
    if (row < 0) continue;
    PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->N - 1);
    rp   = aj + ai[brow];       /*ptr to beginning of column value of the row block*/
    ap   = aa + bs2 * ai[brow]; /*ptr to beginning of element value of the row block*/
    rmax = imax[brow];          /* maximum space allocated for this row */
    nrow = ailen[brow];         /* actual length of this row */
    low  = 0;
    high = nrow;
    for (l = 0; l < n; l++) { /* loop over added columns */
      if (in[l] < 0) continue;
      PetscCheck(in[l] < A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[l], A->cmap->N - 1);
      col  = in[l];
      bcol = col / bs; /* block col number */

      if (brow > bcol) {
        if (a->ignore_ltriangular) continue; /* ignore lower triangular values */
        else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
      }

      ridx = row % bs;
      cidx = col % bs; /*row and col index inside the block */
      if ((brow == bcol && ridx <= cidx) || (brow < bcol)) {
        /* element value a(k,l) */
        if (roworiented) value = v[l + k * n];
        else value = v[k + l * m];

        /* move pointer bap to a(k,l) quickly and add/insert value */
        if (col <= lastcol) low = 0;
        else high = nrow;

        lastcol = col;
        while (high - low > 7) {
          t = (low + high) / 2;
          if (rp[t] > bcol) high = t;
          else low = t;
        }
        for (i = low; i < high; i++) {
          if (rp[i] > bcol) break;
          if (rp[i] == bcol) {
            bap = ap + bs2 * i + bs * cidx + ridx;
            if (is == ADD_VALUES) *bap += value;
            else *bap = value;
            /* for diag block, add/insert its symmetric element a(cidx,ridx) */
            if (brow == bcol && ridx < cidx) {
              bap = ap + bs2 * i + bs * ridx + cidx;
              if (is == ADD_VALUES) *bap += value;
              else *bap = value;
            }
            goto noinsert1;
          }
        }

        if (nonew == 1) goto noinsert1;
        PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
        MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);

        N = nrow++ - 1;
        high++;
        /* shift up all the later entries in this row */
        PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
        PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
        PetscCall(PetscArrayzero(ap + bs2 * i, bs2));
        rp[i]                          = bcol;
        ap[bs2 * i + bs * cidx + ridx] = value;
        /* for diag block, add/insert its symmetric element a(cidx,ridx) */
        if (brow == bcol && ridx < cidx) ap[bs2 * i + bs * ridx + cidx] = value;
        A->nonzerostate++;
      noinsert1:;
        low = i;
      }
    } /* end of loop over added columns */
    ailen[brow] = nrow;
  } /* end of loop over added rows */
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA, IS row, const MatFactorInfo *info)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inA->data;
  Mat           outA;
  PetscBool     row_identity;

  PetscFunctionBegin;
  PetscCheck(info->levels == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only levels=0 is supported for in-place icc");
  PetscCall(ISIdentity(row, &row_identity));
  PetscCheck(row_identity, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix reordering is not supported");
  PetscCheck(inA->rmap->bs == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix block size %" PetscInt_FMT " is not supported", inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */

  outA            = inA;
  inA->factortype = MAT_FACTOR_ICC;
  PetscCall(PetscFree(inA->solvertype));
  PetscCall(PetscStrallocpy(MATSOLVERPETSC, &inA->solvertype));

  PetscCall(MatMarkDiagonal_SeqSBAIJ(inA));
  PetscCall(MatSeqSBAIJSetNumericFactorization_inplace(inA, row_identity));

  PetscCall(PetscObjectReference((PetscObject)row));
  PetscCall(ISDestroy(&a->row));
  a->row = row;
  PetscCall(PetscObjectReference((PetscObject)row));
  PetscCall(ISDestroy(&a->col));
  a->col = row;

  /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */
  if (a->icol) PetscCall(ISInvertPermutation(row, PETSC_DECIDE, &a->icol));

  if (!a->solve_work) PetscCall(PetscMalloc1(inA->rmap->N + inA->rmap->bs, &a->solve_work));

  PetscCall(MatCholeskyFactorNumeric(outA, inA, info));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat, PetscInt *indices)
{
  Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data;
  PetscInt      i, nz, n;

  PetscFunctionBegin;
  nz = baij->maxnz;
  n  = mat->cmap->n;
  for (i = 0; i < nz; i++) baij->j[i] = indices[i];

  baij->nz = nz;
  for (i = 0; i < n; i++) baij->ilen[i] = baij->imax[i];

  PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
  in a `MATSEQSBAIJ` matrix.

  Input Parameters:
+ mat     - the `MATSEQSBAIJ` matrix
- indices - the column indices

  Level: advanced

  Notes:
  This can be called if you have precomputed the nonzero structure of the
  matrix and want to provide it to the matrix object to improve the performance
  of the `MatSetValues()` operation.

  You MUST have set the correct numbers of nonzeros per row in the call to
  `MatCreateSeqSBAIJ()`, and the columns indices MUST be sorted.

  MUST be called before any calls to `MatSetValues()`

.seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreateSeqSBAIJ`
@*/
PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat, PetscInt *indices)
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
  PetscAssertPointer(indices, 2);
  PetscUseMethod(mat, "MatSeqSBAIJSetColumnIndices_C", (Mat, PetscInt *), (mat, indices));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatCopy_SeqSBAIJ(Mat A, Mat B, MatStructure str)
{
  PetscBool isbaij;

  PetscFunctionBegin;
  PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
  PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
  /* If the two matrices have the same copy implementation and nonzero pattern, use fast copy. */
  if (str == SAME_NONZERO_PATTERN && A->ops->copy == B->ops->copy) {
    Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ *)B->data;

    PetscCheck(a->i[a->mbs] == b->i[b->mbs], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
    PetscCheck(a->mbs == b->mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of rows in two matrices are different");
    PetscCheck(a->bs2 == b->bs2, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Different block size");
    PetscCall(PetscArraycpy(b->a, a->a, a->bs2 * a->i[a->mbs]));
    PetscCall(PetscObjectStateIncrease((PetscObject)B));
  } else {
    PetscCall(MatGetRowUpperTriangular(A));
    PetscCall(MatCopy_Basic(A, B, str));
    PetscCall(MatRestoreRowUpperTriangular(A));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A, PetscScalar *array[])
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

  PetscFunctionBegin;
  *array = a->a;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A, PetscScalar *array[])
{
  PetscFunctionBegin;
  *array = NULL;
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y, Mat X, PetscInt *nnz)
{
  PetscInt      bs = Y->rmap->bs, mbs = Y->rmap->N / bs;
  Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ *)X->data;
  Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ *)Y->data;

  PetscFunctionBegin;
  /* Set the number of nonzeros in the new matrix */
  PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs, x->i, x->j, y->i, y->j, nnz));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
{
  Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ *)X->data, *y = (Mat_SeqSBAIJ *)Y->data;
  PetscInt      bs = Y->rmap->bs, bs2 = bs * bs;
  PetscBLASInt  one = 1;

  PetscFunctionBegin;
  if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) {
    PetscBool e = x->nz == y->nz && x->mbs == y->mbs ? PETSC_TRUE : PETSC_FALSE;
    if (e) {
      PetscCall(PetscArraycmp(x->i, y->i, x->mbs + 1, &e));
      if (e) {
        PetscCall(PetscArraycmp(x->j, y->j, x->i[x->mbs], &e));
        if (e) str = SAME_NONZERO_PATTERN;
      }
    }
    if (!e) PetscCheck(str != SAME_NONZERO_PATTERN, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MatStructure is not SAME_NONZERO_PATTERN");
  }
  if (str == SAME_NONZERO_PATTERN) {
    PetscScalar  alpha = a;
    PetscBLASInt bnz;
    PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
    PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
    PetscCall(PetscObjectStateIncrease((PetscObject)Y));
  } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
    PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
    PetscCall(MatAXPY_Basic(Y, a, X, str));
    PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
  } else {
    Mat       B;
    PetscInt *nnz;
    PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
    PetscCall(MatGetRowUpperTriangular(X));
    PetscCall(MatGetRowUpperTriangular(Y));
    PetscCall(PetscMalloc1(Y->rmap->N, &nnz));
    PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
    PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
    PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
    PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
    PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
    PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(Y, X, nnz));
    PetscCall(MatSeqSBAIJSetPreallocation(B, bs, 0, nnz));

    PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));

    PetscCall(MatHeaderMerge(Y, &B));
    PetscCall(PetscFree(nnz));
    PetscCall(MatRestoreRowUpperTriangular(X));
    PetscCall(MatRestoreRowUpperTriangular(Y));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatIsSymmetric_SeqSBAIJ(Mat A, PetscReal tol, PetscBool *flg)
{
  PetscFunctionBegin;
  *flg = PETSC_TRUE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A, PetscBool *flg)
{
  PetscFunctionBegin;
  *flg = PETSC_TRUE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatIsHermitian_SeqSBAIJ(Mat A, PetscReal tol, PetscBool *flg)
{
  PetscFunctionBegin;
  *flg = PETSC_FALSE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatConjugate_SeqSBAIJ(Mat A)
{
#if defined(PETSC_USE_COMPLEX)
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt      i, nz = a->bs2 * a->i[a->mbs];
  MatScalar    *aa = a->a;

  PetscFunctionBegin;
  for (i = 0; i < nz; i++) aa[i] = PetscConj(aa[i]);
#else
  PetscFunctionBegin;
#endif
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatRealPart_SeqSBAIJ(Mat A)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt      i, nz = a->bs2 * a->i[a->mbs];
  MatScalar    *aa = a->a;

  PetscFunctionBegin;
  for (i = 0; i < nz; i++) aa[i] = PetscRealPart(aa[i]);
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A)
{
  Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
  PetscInt      i, nz = a->bs2 * a->i[a->mbs];
  MatScalar    *aa = a->a;

  PetscFunctionBegin;
  for (i = 0; i < nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A, PetscInt is_n, const PetscInt is_idx[], PetscScalar diag, Vec x, Vec b)
{
  Mat_SeqSBAIJ      *baij = (Mat_SeqSBAIJ *)A->data;
  PetscInt           i, j, k, count;
  PetscInt           bs = A->rmap->bs, bs2 = baij->bs2, row, col;
  PetscScalar        zero = 0.0;
  MatScalar         *aa;
  const PetscScalar *xx;
  PetscScalar       *bb;
  PetscBool         *zeroed, vecs = PETSC_FALSE;

  PetscFunctionBegin;
  /* fix right hand side if needed */
  if (x && b) {
    PetscCall(VecGetArrayRead(x, &xx));
    PetscCall(VecGetArray(b, &bb));
    vecs = PETSC_TRUE;
  }

  /* zero the columns */
  PetscCall(PetscCalloc1(A->rmap->n, &zeroed));
  for (i = 0; i < is_n; i++) {
    PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "row %" PetscInt_FMT " out of range", is_idx[i]);
    zeroed[is_idx[i]] = PETSC_TRUE;
  }
  if (vecs) {
    for (i = 0; i < A->rmap->N; i++) {
      row = i / bs;
      for (j = baij->i[row]; j < baij->i[row + 1]; j++) {
        for (k = 0; k < bs; k++) {
          col = bs * baij->j[j] + k;
          if (col <= i) continue;
          aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
          if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0] * xx[col];
          if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0] * xx[i];
        }
      }
    }
    for (i = 0; i < is_n; i++) bb[is_idx[i]] = diag * xx[is_idx[i]];
  }

  for (i = 0; i < A->rmap->N; i++) {
    if (!zeroed[i]) {
      row = i / bs;
      for (j = baij->i[row]; j < baij->i[row + 1]; j++) {
        for (k = 0; k < bs; k++) {
          col = bs * baij->j[j] + k;
          if (zeroed[col]) {
            aa    = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
            aa[0] = 0.0;
          }
        }
      }
    }
  }
  PetscCall(PetscFree(zeroed));
  if (vecs) {
    PetscCall(VecRestoreArrayRead(x, &xx));
    PetscCall(VecRestoreArray(b, &bb));
  }

  /* zero the rows */
  for (i = 0; i < is_n; i++) {
    row   = is_idx[i];
    count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
    aa    = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs);
    for (k = 0; k < count; k++) {
      aa[0] = zero;
      aa += bs;
    }
    if (diag != 0.0) PetscUseTypeMethod(A, setvalues, 1, &row, 1, &row, &diag, INSERT_VALUES);
  }
  PetscCall(MatAssemblyEnd_SeqSBAIJ(A, MAT_FINAL_ASSEMBLY));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatShift_SeqSBAIJ(Mat Y, PetscScalar a)
{
  Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)Y->data;

  PetscFunctionBegin;
  if (!Y->preallocated || !aij->nz) PetscCall(MatSeqSBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL));
  PetscCall(MatShift_Basic(Y, a));
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatEliminateZeros_SeqSBAIJ(Mat A, PetscBool keep)
{
  Mat_SeqSBAIJ *a      = (Mat_SeqSBAIJ *)A->data;
  PetscInt      fshift = 0, fshift_prev = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax, j, k;
  PetscInt      m = A->rmap->N, *ailen = a->ilen;
  PetscInt      mbs = a->mbs, bs2 = a->bs2, rmax = 0;
  MatScalar    *aa = a->a, *ap;
  PetscBool     zero;

  PetscFunctionBegin;
  PetscCheck(A->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot eliminate zeros for unassembled matrix");
  if (m) rmax = ailen[0];
  for (i = 1; i <= mbs; i++) {
    for (k = ai[i - 1]; k < ai[i]; k++) {
      zero = PETSC_TRUE;
      ap   = aa + bs2 * k;
      for (j = 0; j < bs2 && zero; j++) {
        if (ap[j] != 0.0) zero = PETSC_FALSE;
      }
      if (zero && (aj[k] != i - 1 || !keep)) fshift++;
      else {
        if (zero && aj[k] == i - 1) PetscCall(PetscInfo(A, "Keep the diagonal block at row %" PetscInt_FMT "\n", i - 1));
        aj[k - fshift] = aj[k];
        PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2));
      }
    }
    ai[i - 1] -= fshift_prev;
    fshift_prev  = fshift;
    ailen[i - 1] = imax[i - 1] = ai[i] - fshift - ai[i - 1];
    a->nonzerorowcnt += ((ai[i] - fshift - ai[i - 1]) > 0);
    rmax = PetscMax(rmax, ailen[i - 1]);
  }
  if (fshift) {
    if (mbs) {
      ai[mbs] -= fshift;
      a->nz = ai[mbs];
    }
    PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; zeros eliminated: %" PetscInt_FMT "; nonzeros left: %" PetscInt_FMT "\n", m, A->cmap->n, fshift, a->nz));
    A->nonzerostate++;
    A->info.nz_unneeded += (PetscReal)fshift;
    a->rmax = rmax;
    PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
    PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
                                       MatGetRow_SeqSBAIJ,
                                       MatRestoreRow_SeqSBAIJ,
                                       MatMult_SeqSBAIJ_N,
                                       /*  4*/ MatMultAdd_SeqSBAIJ_N,
                                       MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */
                                       MatMultAdd_SeqSBAIJ_N,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 10*/ NULL,
                                       NULL,
                                       MatCholeskyFactor_SeqSBAIJ,
                                       MatSOR_SeqSBAIJ,
                                       MatTranspose_SeqSBAIJ,
                                       /* 15*/ MatGetInfo_SeqSBAIJ,
                                       MatEqual_SeqSBAIJ,
                                       MatGetDiagonal_SeqSBAIJ,
                                       MatDiagonalScale_SeqSBAIJ,
                                       MatNorm_SeqSBAIJ,
                                       /* 20*/ NULL,
                                       MatAssemblyEnd_SeqSBAIJ,
                                       MatSetOption_SeqSBAIJ,
                                       MatZeroEntries_SeqSBAIJ,
                                       /* 24*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 29*/ MatSetUp_Seq_Hash,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 34*/ MatDuplicate_SeqSBAIJ,
                                       NULL,
                                       NULL,
                                       NULL,
                                       MatICCFactor_SeqSBAIJ,
                                       /* 39*/ MatAXPY_SeqSBAIJ,
                                       MatCreateSubMatrices_SeqSBAIJ,
                                       MatIncreaseOverlap_SeqSBAIJ,
                                       MatGetValues_SeqSBAIJ,
                                       MatCopy_SeqSBAIJ,
                                       /* 44*/ NULL,
                                       MatScale_SeqSBAIJ,
                                       MatShift_SeqSBAIJ,
                                       NULL,
                                       MatZeroRowsColumns_SeqSBAIJ,
                                       /* 49*/ NULL,
                                       MatGetRowIJ_SeqSBAIJ,
                                       MatRestoreRowIJ_SeqSBAIJ,
                                       NULL,
                                       NULL,
                                       /* 54*/ NULL,
                                       NULL,
                                       NULL,
                                       MatPermute_SeqSBAIJ,
                                       MatSetValuesBlocked_SeqSBAIJ,
                                       /* 59*/ MatCreateSubMatrix_SeqSBAIJ,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 64*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 69*/ MatGetRowMaxAbs_SeqSBAIJ,
                                       NULL,
                                       MatConvert_MPISBAIJ_Basic,
                                       NULL,
                                       NULL,
                                       /* 74*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 79*/ NULL,
                                       NULL,
                                       NULL,
                                       MatGetInertia_SeqSBAIJ,
                                       MatLoad_SeqSBAIJ,
                                       /* 84*/ MatIsSymmetric_SeqSBAIJ,
                                       MatIsHermitian_SeqSBAIJ,
                                       MatIsStructurallySymmetric_SeqSBAIJ,
                                       NULL,
                                       NULL,
                                       /* 89*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 94*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /* 99*/ NULL,
                                       NULL,
                                       NULL,
                                       MatConjugate_SeqSBAIJ,
                                       NULL,
                                       /*104*/ NULL,
                                       MatRealPart_SeqSBAIJ,
                                       MatImaginaryPart_SeqSBAIJ,
                                       MatGetRowUpperTriangular_SeqSBAIJ,
                                       MatRestoreRowUpperTriangular_SeqSBAIJ,
                                       /*109*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       MatMissingDiagonal_SeqSBAIJ,
                                       /*114*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*119*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*124*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*129*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*134*/ NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*139*/ MatSetBlockSizes_Default,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*144*/ MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       NULL,
                                       /*150*/ NULL,
                                       MatEliminateZeros_SeqSBAIJ,
                                       NULL};

static PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat)
{
  Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data;
  PetscInt      nz  = aij->i[mat->rmap->N] * mat->rmap->bs * aij->bs2;

  PetscFunctionBegin;
  PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");

  /* allocate space for values if not already there */
  if (!aij->saved_values) PetscCall(PetscMalloc1(nz + 1, &aij->saved_values));

  /* copy values over */
  PetscCall(PetscArraycpy(aij->saved_values, aij->a, nz));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat)
{
  Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data;
  PetscInt      nz  = aij->i[mat->rmap->N] * mat->rmap->bs * aij->bs2;

  PetscFunctionBegin;
  PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
  PetscCheck(aij->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");

  /* copy values over */
  PetscCall(PetscArraycpy(aij->a, aij->saved_values, nz));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[])
{
  Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ *)B->data;
  PetscInt      i, mbs, nbs, bs2;
  PetscBool     skipallocation = PETSC_FALSE, flg = PETSC_FALSE, realalloc = PETSC_FALSE;

  PetscFunctionBegin;
  if (B->hash_active) {
    PetscInt bs;
    B->ops[0] = b->cops;
    PetscCall(PetscHMapIJVDestroy(&b->ht));
    PetscCall(MatGetBlockSize(B, &bs));
    if (bs > 1) PetscCall(PetscHSetIJDestroy(&b->bht));
    PetscCall(PetscFree(b->dnz));
    PetscCall(PetscFree(b->bdnz));
    B->hash_active = PETSC_FALSE;
  }
  if (nz >= 0 || nnz) realalloc = PETSC_TRUE;

  PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
  PetscCall(PetscLayoutSetUp(B->rmap));
  PetscCall(PetscLayoutSetUp(B->cmap));
  PetscCheck(B->rmap->N <= B->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "SEQSBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
  PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));

  B->preallocated = PETSC_TRUE;

  mbs = B->rmap->N / bs;
  nbs = B->cmap->n / bs;
  bs2 = bs * bs;

  PetscCheck(mbs * bs == B->rmap->N && nbs * bs == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows, cols must be divisible by blocksize");

  if (nz == MAT_SKIP_ALLOCATION) {
    skipallocation = PETSC_TRUE;
    nz             = 0;
  }

  if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
  PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nz cannot be less than 0: value %" PetscInt_FMT, nz);
  if (nnz) {
    for (i = 0; i < mbs; i++) {
      PetscCheck(nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, nnz[i]);
      PetscCheck(nnz[i] <= nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " block rowlength %" PetscInt_FMT, i, nnz[i], nbs);
    }
  }

  B->ops->mult             = MatMult_SeqSBAIJ_N;
  B->ops->multadd          = MatMultAdd_SeqSBAIJ_N;
  B->ops->multtranspose    = MatMult_SeqSBAIJ_N;
  B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N;

  PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_no_unroll", &flg, NULL));
  if (!flg) {
    switch (bs) {
    case 1:
      B->ops->mult             = MatMult_SeqSBAIJ_1;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_1;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_1;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1;
      break;
    case 2:
      B->ops->mult             = MatMult_SeqSBAIJ_2;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_2;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_2;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2;
      break;
    case 3:
      B->ops->mult             = MatMult_SeqSBAIJ_3;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_3;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_3;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3;
      break;
    case 4:
      B->ops->mult             = MatMult_SeqSBAIJ_4;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_4;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_4;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4;
      break;
    case 5:
      B->ops->mult             = MatMult_SeqSBAIJ_5;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_5;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_5;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5;
      break;
    case 6:
      B->ops->mult             = MatMult_SeqSBAIJ_6;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_6;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_6;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6;
      break;
    case 7:
      B->ops->mult             = MatMult_SeqSBAIJ_7;
      B->ops->multadd          = MatMultAdd_SeqSBAIJ_7;
      B->ops->multtranspose    = MatMult_SeqSBAIJ_7;
      B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7;
      break;
    }
  }

  b->mbs = mbs;
  b->nbs = nbs;
  if (!skipallocation) {
    if (!b->imax) {
      PetscCall(PetscMalloc2(mbs, &b->imax, mbs, &b->ilen));

      b->free_imax_ilen = PETSC_TRUE;
    }
    if (!nnz) {
      if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
      else if (nz <= 0) nz = 1;
      nz = PetscMin(nbs, nz);
      for (i = 0; i < mbs; i++) b->imax[i] = nz;
      PetscCall(PetscIntMultError(nz, mbs, &nz));
    } else {
      PetscInt64 nz64 = 0;
      for (i = 0; i < mbs; i++) {
        b->imax[i] = nnz[i];
        nz64 += nnz[i];
      }
      PetscCall(PetscIntCast(nz64, &nz));
    }
    /* b->ilen will count nonzeros in each block row so far. */
    for (i = 0; i < mbs; i++) b->ilen[i] = 0;
    /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */

    /* allocate the matrix space */
    PetscCall(MatSeqXAIJFreeAIJ(B, &b->a, &b->j, &b->i));
    PetscCall(PetscMalloc3(bs2 * nz, &b->a, nz, &b->j, B->rmap->N + 1, &b->i));
    PetscCall(PetscArrayzero(b->a, nz * bs2));
    PetscCall(PetscArrayzero(b->j, nz));

    b->singlemalloc = PETSC_TRUE;

    /* pointer to beginning of each row */
    b->i[0] = 0;
    for (i = 1; i < mbs + 1; i++) b->i[i] = b->i[i - 1] + b->imax[i - 1];

    b->free_a  = PETSC_TRUE;
    b->free_ij = PETSC_TRUE;
  } else {
    b->free_a  = PETSC_FALSE;
    b->free_ij = PETSC_FALSE;
  }

  b->bs2     = bs2;
  b->nz      = 0;
  b->maxnz   = nz;
  b->inew    = NULL;
  b->jnew    = NULL;
  b->anew    = NULL;
  b->a2anew  = NULL;
  b->permute = PETSC_FALSE;

  B->was_assembled = PETSC_FALSE;
  B->assembled     = PETSC_FALSE;
  if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
{
  PetscInt     i, j, m, nz, anz, nz_max = 0, *nnz;
  PetscScalar *values      = NULL;
  PetscBool    roworiented = ((Mat_SeqSBAIJ *)B->data)->roworiented;

  PetscFunctionBegin;
  PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
  PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
  PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
  PetscCall(PetscLayoutSetUp(B->rmap));
  PetscCall(PetscLayoutSetUp(B->cmap));
  PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
  m = B->rmap->n / bs;

  PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
  PetscCall(PetscMalloc1(m + 1, &nnz));
  for (i = 0; i < m; i++) {
    nz = ii[i + 1] - ii[i];
    PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
    anz = 0;
    for (j = 0; j < nz; j++) {
      /* count only values on the diagonal or above */
      if (jj[ii[i] + j] >= i) {
        anz = nz - j;
        break;
      }
    }
    nz_max = PetscMax(nz_max, anz);
    nnz[i] = anz;
  }
  PetscCall(MatSeqSBAIJSetPreallocation(B, bs, 0, nnz));
  PetscCall(PetscFree(nnz));

  values = (PetscScalar *)V;
  if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
  for (i = 0; i < m; i++) {
    PetscInt        ncols = ii[i + 1] - ii[i];
    const PetscInt *icols = jj + ii[i];
    if (!roworiented || bs == 1) {
      const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
      PetscCall(MatSetValuesBlocked_SeqSBAIJ(B, 1, &i, ncols, icols, svals, INSERT_VALUES));
    } else {
      for (j = 0; j < ncols; j++) {
        const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
        PetscCall(MatSetValuesBlocked_SeqSBAIJ(B, 1, &i, 1, &icols[j], svals, INSERT_VALUES));
      }
    }
  }
  if (!V) PetscCall(PetscFree(values));
  PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
  PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
  PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*
   This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization
*/
PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B, PetscBool natural)
{
  PetscBool flg = PETSC_FALSE;
  PetscInt  bs  = B->rmap->bs;

  PetscFunctionBegin;
  PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_no_unroll", &flg, NULL));
  if (flg) bs = 8;

  if (!natural) {
    switch (bs) {
    case 1:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace;
      break;
    case 2:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
      break;
    case 3:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
      break;
    case 4:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
      break;
    case 5:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
      break;
    case 6:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
      break;
    case 7:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
      break;
    default:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N;
      break;
    }
  } else {
    switch (bs) {
    case 1:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace;
      break;
    case 2:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
      break;
    case 3:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
      break;
    case 4:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
      break;
    case 5:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
      break;
    case 6:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
      break;
    case 7:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
      break;
    default:
      B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering;
      break;
    }
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType, MatReuse, Mat *);
static PetscErrorCode       MatFactorGetSolverType_petsc(Mat A, MatSolverType *type)
{
  PetscFunctionBegin;
  *type = MATSOLVERPETSC;
  PetscFunctionReturn(PETSC_SUCCESS);
}

PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A, MatFactorType ftype, Mat *B)
{
  PetscInt n = A->rmap->n;

  PetscFunctionBegin;
#if defined(PETSC_USE_COMPLEX)
  if ((ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) && A->hermitian == PETSC_BOOL3_TRUE && A->symmetric != PETSC_BOOL3_TRUE) {
    PetscCall(PetscInfo(A, "Hermitian MAT_FACTOR_CHOLESKY or MAT_FACTOR_ICC are not supported. Use MAT_FACTOR_LU instead.\n"));
    *B = NULL;
    PetscFunctionReturn(PETSC_SUCCESS);
  }
#endif

  PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
  PetscCall(MatSetSizes(*B, n, n, n, n));
  if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) {
    PetscCall(MatSetType(*B, MATSEQSBAIJ));
    PetscCall(MatSeqSBAIJSetPreallocation(*B, A->rmap->bs, MAT_SKIP_ALLOCATION, NULL));

    (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ;
    (*B)->ops->iccfactorsymbolic      = MatICCFactorSymbolic_SeqSBAIJ;
    PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_CHOLESKY]));
    PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_ICC]));
  } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Factor type not supported");

  (*B)->factortype     = ftype;
  (*B)->canuseordering = PETSC_TRUE;
  PetscCall(PetscFree((*B)->solvertype));
  PetscCall(PetscStrallocpy(MATSOLVERPETSC, &(*B)->solvertype));
  PetscCall(PetscObjectComposeFunction((PetscObject)*B, "MatFactorGetSolverType_C", MatFactorGetSolverType_petsc));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  MatSeqSBAIJGetArray - gives access to the array where the numerical data for a `MATSEQSBAIJ` matrix is stored

  Not Collective

  Input Parameter:
. A - a `MATSEQSBAIJ` matrix

  Output Parameter:
. array - pointer to the data

  Level: intermediate

.seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatSeqSBAIJRestoreArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`
@*/
PetscErrorCode MatSeqSBAIJGetArray(Mat A, PetscScalar **array)
{
  PetscFunctionBegin;
  PetscUseMethod(A, "MatSeqSBAIJGetArray_C", (Mat, PetscScalar **), (A, array));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  MatSeqSBAIJRestoreArray - returns access to the array where the numerical data for a `MATSEQSBAIJ` matrix is stored obtained by `MatSeqSBAIJGetArray()`

  Not Collective

  Input Parameters:
+ A     - a `MATSEQSBAIJ` matrix
- array - pointer to the data

  Level: intermediate

.seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatSeqSBAIJGetArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`
@*/
PetscErrorCode MatSeqSBAIJRestoreArray(Mat A, PetscScalar **array)
{
  PetscFunctionBegin;
  PetscUseMethod(A, "MatSeqSBAIJRestoreArray_C", (Mat, PetscScalar **), (A, array));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*MC
  MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
  based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.

  For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
  can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`).

  Options Database Key:
  . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to `MatSetFromOptions()`

  Level: beginner

  Notes:
    By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not
     stored and it is assumed they symmetric to the upper triangular). If you call `MatSetOption`(`Mat`,`MAT_IGNORE_LOWER_TRIANGULAR`,`PETSC_FALSE`) or use
     the options database `-mat_ignore_lower_triangular` false it will generate an error if you try to set a value in the lower triangular portion.

    The number of rows in the matrix must be less than or equal to the number of columns

.seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreateSeqSBAIJ()`, `MatType`, `MATMPISBAIJ`
M*/
PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B)
{
  Mat_SeqSBAIJ *b;
  PetscMPIInt   size;
  PetscBool     no_unroll = PETSC_FALSE, no_inode = PETSC_FALSE;

  PetscFunctionBegin;
  PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
  PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1");

  PetscCall(PetscNew(&b));
  B->data   = (void *)b;
  B->ops[0] = MatOps_Values;

  B->ops->destroy    = MatDestroy_SeqSBAIJ;
  B->ops->view       = MatView_SeqSBAIJ;
  b->row             = NULL;
  b->icol            = NULL;
  b->reallocs        = 0;
  b->saved_values    = NULL;
  b->inode.limit     = 5;
  b->inode.max_limit = 5;

  b->roworiented        = PETSC_TRUE;
  b->nonew              = 0;
  b->diag               = NULL;
  b->solve_work         = NULL;
  b->mult_work          = NULL;
  B->spptr              = NULL;
  B->info.nz_unneeded   = (PetscReal)b->maxnz * b->bs2;
  b->keepnonzeropattern = PETSC_FALSE;

  b->inew    = NULL;
  b->jnew    = NULL;
  b->anew    = NULL;
  b->a2anew  = NULL;
  b->permute = PETSC_FALSE;

  b->ignore_ltriangular = PETSC_TRUE;

  PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_ignore_lower_triangular", &b->ignore_ltriangular, NULL));

  b->getrow_utriangular = PETSC_FALSE;

  PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_getrow_uppertriangular", &b->getrow_utriangular, NULL));

  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJGetArray_C", MatSeqSBAIJGetArray_SeqSBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJRestoreArray_C", MatSeqSBAIJRestoreArray_SeqSBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJSetColumnIndices_C", MatSeqSBAIJSetColumnIndices_SeqSBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_seqaij_C", MatConvert_SeqSBAIJ_SeqAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_seqbaij_C", MatConvert_SeqSBAIJ_SeqBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJSetPreallocation_C", MatSeqSBAIJSetPreallocation_SeqSBAIJ));
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJSetPreallocationCSR_C", MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ));
#if defined(PETSC_HAVE_ELEMENTAL)
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_elemental_C", MatConvert_SeqSBAIJ_Elemental));
#endif
#if defined(PETSC_HAVE_SCALAPACK)
  PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
#endif

  B->symmetry_eternal            = PETSC_TRUE;
  B->structural_symmetry_eternal = PETSC_TRUE;
  B->symmetric                   = PETSC_BOOL3_TRUE;
  B->structurally_symmetric      = PETSC_BOOL3_TRUE;
#if defined(PETSC_USE_COMPLEX)
  B->hermitian = PETSC_BOOL3_FALSE;
#else
  B->hermitian = PETSC_BOOL3_TRUE;
#endif

  PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSBAIJ));

  PetscOptionsBegin(PetscObjectComm((PetscObject)B), ((PetscObject)B)->prefix, "Options for SEQSBAIJ matrix", "Mat");
  PetscCall(PetscOptionsBool("-mat_no_unroll", "Do not optimize for inodes (slower)", NULL, no_unroll, &no_unroll, NULL));
  if (no_unroll) PetscCall(PetscInfo(B, "Not using Inode routines due to -mat_no_unroll\n"));
  PetscCall(PetscOptionsBool("-mat_no_inode", "Do not optimize for inodes (slower)", NULL, no_inode, &no_inode, NULL));
  if (no_inode) PetscCall(PetscInfo(B, "Not using Inode routines due to -mat_no_inode\n"));
  PetscCall(PetscOptionsInt("-mat_inode_limit", "Do not use inodes larger then this value", NULL, b->inode.limit, &b->inode.limit, NULL));
  PetscOptionsEnd();
  b->inode.use = (PetscBool)(!(no_unroll || no_inode));
  if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit;
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
  compressed row) `MATSEQSBAIJ` format.  For good matrix assembly performance the
  user should preallocate the matrix storage by setting the parameter `nz`
  (or the array `nnz`).

  Collective

  Input Parameters:
+ B   - the symmetric matrix
. bs  - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
          blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
. nz  - number of block nonzeros per block row (same for all rows)
- nnz - array containing the number of block nonzeros in the upper triangular plus
         diagonal portion of each block (possibly different for each block row) or `NULL`

  Options Database Keys:
+ -mat_no_unroll  - uses code that does not unroll the loops in the
                     block calculations (much slower)
- -mat_block_size - size of the blocks to use (only works if a negative bs is passed in

  Level: intermediate

  Notes:
  Specify the preallocated storage with either `nz` or `nnz` (not both).
  Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory
  allocation.  See [Sparse Matrices](sec_matsparse) for details.

  You can call `MatGetInfo()` to get information on how effective the preallocation was;
  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
  You can also run with the option `-info` and look for messages with the string
  malloc in them to see if additional memory allocation was needed.

  If the `nnz` parameter is given then the `nz` parameter is ignored

.seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateSBAIJ()`
@*/
PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
  PetscValidType(B, 1);
  PetscValidLogicalCollectiveInt(B, bs, 2);
  PetscTryMethod(B, "MatSeqSBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[]), (B, bs, nz, nnz));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  MatSeqSBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATSEQSBAIJ` format using the given nonzero structure and (optional) numerical values

  Input Parameters:
+ B  - the matrix
. bs - size of block, the blocks are ALWAYS square.
. i  - the indices into j for the start of each local row (starts with zero)
. j  - the column indices for each local row (starts with zero) these must be sorted for each row
- v  - optional values in the matrix

  Level: advanced

  Notes:
  The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
  may want to use the default `MAT_ROW_ORIENTED` = `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
  over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
  `MAT_ROW_ORIENTED` = `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
  block column and the second index is over columns within a block.

  Any entries below the diagonal are ignored

  Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
  and usually the numerical values as well

.seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValuesBlocked()`, `MatSeqSBAIJSetPreallocation()`
@*/
PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
{
  PetscFunctionBegin;
  PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
  PetscValidType(B, 1);
  PetscValidLogicalCollectiveInt(B, bs, 2);
  PetscTryMethod(B, "MatSeqSBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in (block
  compressed row) `MATSEQSBAIJ` format.  For good matrix assembly performance the
  user should preallocate the matrix storage by setting the parameter `nz`
  (or the array `nnz`).

  Collective

  Input Parameters:
+ comm - MPI communicator, set to `PETSC_COMM_SELF`
. bs   - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
          blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
. m    - number of rows
. n    - number of columns
. nz   - number of block nonzeros per block row (same for all rows)
- nnz  - array containing the number of block nonzeros in the upper triangular plus
         diagonal portion of each block (possibly different for each block row) or `NULL`

  Output Parameter:
. A - the symmetric matrix

  Options Database Keys:
+ -mat_no_unroll  - uses code that does not unroll the loops in the
                     block calculations (much slower)
- -mat_block_size - size of the blocks to use

  Level: intermediate

  Notes:
  It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
  MatXXXXSetPreallocation() paradigm instead of this routine directly.
  [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]

  The number of rows and columns must be divisible by blocksize.
  This matrix type does not support complex Hermitian operation.

  Specify the preallocated storage with either `nz` or `nnz` (not both).
  Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory
  allocation.  See [Sparse Matrices](sec_matsparse) for details.

  If the `nnz` parameter is given then the `nz` parameter is ignored

.seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateSBAIJ()`
@*/
PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt nz, const PetscInt nnz[], Mat *A)
{
  PetscFunctionBegin;
  PetscCall(MatCreate(comm, A));
  PetscCall(MatSetSizes(*A, m, n, m, n));
  PetscCall(MatSetType(*A, MATSEQSBAIJ));
  PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, nz, (PetscInt *)nnz));
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A, MatDuplicateOption cpvalues, Mat *B)
{
  Mat           C;
  Mat_SeqSBAIJ *c, *a  = (Mat_SeqSBAIJ *)A->data;
  PetscInt      i, mbs = a->mbs, nz = a->nz, bs2 = a->bs2;

  PetscFunctionBegin;
  PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Cannot duplicate unassembled matrix");
  PetscCheck(a->i[mbs] == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupt matrix");

  *B = NULL;
  PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &C));
  PetscCall(MatSetSizes(C, A->rmap->N, A->cmap->n, A->rmap->N, A->cmap->n));
  PetscCall(MatSetBlockSizesFromMats(C, A, A));
  PetscCall(MatSetType(C, MATSEQSBAIJ));
  c = (Mat_SeqSBAIJ *)C->data;

  C->preallocated       = PETSC_TRUE;
  C->factortype         = A->factortype;
  c->row                = NULL;
  c->icol               = NULL;
  c->saved_values       = NULL;
  c->keepnonzeropattern = a->keepnonzeropattern;
  C->assembled          = PETSC_TRUE;

  PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
  PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
  c->bs2 = a->bs2;
  c->mbs = a->mbs;
  c->nbs = a->nbs;

  if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    c->imax           = a->imax;
    c->ilen           = a->ilen;
    c->free_imax_ilen = PETSC_FALSE;
  } else {
    PetscCall(PetscMalloc2((mbs + 1), &c->imax, (mbs + 1), &c->ilen));
    for (i = 0; i < mbs; i++) {
      c->imax[i] = a->imax[i];
      c->ilen[i] = a->ilen[i];
    }
    c->free_imax_ilen = PETSC_TRUE;
  }

  /* allocate the matrix space */
  if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    PetscCall(PetscMalloc1(bs2 * nz, &c->a));
    c->i            = a->i;
    c->j            = a->j;
    c->singlemalloc = PETSC_FALSE;
    c->free_a       = PETSC_TRUE;
    c->free_ij      = PETSC_FALSE;
    c->parent       = A;
    PetscCall(PetscObjectReference((PetscObject)A));
    PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
    PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
  } else {
    PetscCall(PetscMalloc3(bs2 * nz, &c->a, nz, &c->j, mbs + 1, &c->i));
    PetscCall(PetscArraycpy(c->i, a->i, mbs + 1));
    c->singlemalloc = PETSC_TRUE;
    c->free_a       = PETSC_TRUE;
    c->free_ij      = PETSC_TRUE;
  }
  if (mbs > 0) {
    if (cpvalues != MAT_SHARE_NONZERO_PATTERN) PetscCall(PetscArraycpy(c->j, a->j, nz));
    if (cpvalues == MAT_COPY_VALUES) {
      PetscCall(PetscArraycpy(c->a, a->a, bs2 * nz));
    } else {
      PetscCall(PetscArrayzero(c->a, bs2 * nz));
    }
    if (a->jshort) {
      /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */
      /* if the parent matrix is reassembled, this child matrix will never notice */
      PetscCall(PetscMalloc1(nz, &c->jshort));
      PetscCall(PetscArraycpy(c->jshort, a->jshort, nz));

      c->free_jshort = PETSC_TRUE;
    }
  }

  c->roworiented = a->roworiented;
  c->nonew       = a->nonew;

  if (a->diag) {
    if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
      c->diag      = a->diag;
      c->free_diag = PETSC_FALSE;
    } else {
      PetscCall(PetscMalloc1(mbs, &c->diag));
      for (i = 0; i < mbs; i++) c->diag[i] = a->diag[i];
      c->free_diag = PETSC_TRUE;
    }
  }
  c->nz         = a->nz;
  c->maxnz      = a->nz; /* Since we allocate exactly the right amount */
  c->solve_work = NULL;
  c->mult_work  = NULL;

  *B = C;
  PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/* Used for both SeqBAIJ and SeqSBAIJ matrices */
#define MatLoad_SeqSBAIJ_Binary MatLoad_SeqBAIJ_Binary

PetscErrorCode MatLoad_SeqSBAIJ(Mat mat, PetscViewer viewer)
{
  PetscBool isbinary;

  PetscFunctionBegin;
  PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
  PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
  PetscCall(MatLoad_SeqSBAIJ_Binary(mat, viewer));
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@
  MatCreateSeqSBAIJWithArrays - Creates an sequential `MATSEQSBAIJ` matrix using matrix elements
  (upper triangular entries in CSR format) provided by the user.

  Collective

  Input Parameters:
+ comm - must be an MPI communicator of size 1
. bs   - size of block
. m    - number of rows
. n    - number of columns
. i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
. j    - column indices
- a    - matrix values

  Output Parameter:
. mat - the matrix

  Level: advanced

  Notes:
  The `i`, `j`, and `a` arrays are not copied by this routine, the user must free these arrays
  once the matrix is destroyed

  You cannot set new nonzero locations into this matrix, that will generate an error.

  The `i` and `j` indices are 0 based

  When block size is greater than 1 the matrix values must be stored using the `MATSBAIJ` storage format. For block size of 1
  it is the regular CSR format excluding the lower triangular elements.

.seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSBAIJ()`, `MatCreateSeqSBAIJ()`
@*/
PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], Mat *mat)
{
  PetscInt      ii;
  Mat_SeqSBAIJ *sbaij;

  PetscFunctionBegin;
  PetscCheck(bs == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "block size %" PetscInt_FMT " > 1 is not supported yet", bs);
  PetscCheck(m == 0 || i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");

  PetscCall(MatCreate(comm, mat));
  PetscCall(MatSetSizes(*mat, m, n, m, n));
  PetscCall(MatSetType(*mat, MATSEQSBAIJ));
  PetscCall(MatSeqSBAIJSetPreallocation(*mat, bs, MAT_SKIP_ALLOCATION, NULL));
  sbaij = (Mat_SeqSBAIJ *)(*mat)->data;
  PetscCall(PetscMalloc2(m, &sbaij->imax, m, &sbaij->ilen));

  sbaij->i = i;
  sbaij->j = j;
  sbaij->a = a;

  sbaij->singlemalloc   = PETSC_FALSE;
  sbaij->nonew          = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
  sbaij->free_a         = PETSC_FALSE;
  sbaij->free_ij        = PETSC_FALSE;
  sbaij->free_imax_ilen = PETSC_TRUE;

  for (ii = 0; ii < m; ii++) {
    sbaij->ilen[ii] = sbaij->imax[ii] = i[ii + 1] - i[ii];
    PetscCheck(i[ii + 1] >= i[ii], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT, ii, i[ii + 1] - i[ii]);
  }
  if (PetscDefined(USE_DEBUG)) {
    for (ii = 0; ii < sbaij->i[m]; ii++) {
      PetscCheck(j[ii] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]);
      PetscCheck(j[ii] < n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index too large at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]);
    }
  }

  PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
  PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
{
  PetscFunctionBegin;
  PetscCall(MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm, inmat, n, scall, outmat));
  PetscFunctionReturn(PETSC_SUCCESS);
}