149b5e25fSSatish Balay /* Using Modified Sparse Row (MSR) storage. 249b5e25fSSatish Balay See page 85, "Iterative Methods ..." by Saad. */ 349b5e25fSSatish Balay 4*9b0e81eeSHong Zhang /*$Id: sbaijfact.c,v 1.38 2000/10/31 16:06:00 hzhang Exp hzhang $*/ 549b5e25fSSatish Balay /* 6effa298cSHong Zhang Symbolic U^T*D*U factorization for SBAIJ format. Modified from SSF of YSMP. 749b5e25fSSatish Balay */ 849b5e25fSSatish Balay #include "sbaij.h" 949b5e25fSSatish Balay #include "src/mat/impls/baij/seq/baij.h" 1049b5e25fSSatish Balay #include "src/vec/vecimpl.h" 1149b5e25fSSatish Balay #include "src/inline/ilu.h" 1249a6740bSHong Zhang #include "include/petscis.h" 1349b5e25fSSatish Balay 1449b5e25fSSatish Balay #undef __FUNC__ 156f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorSymbolic_SeqSBAIJ" 1677f73120SHong Zhang int MatCholeskyFactorSymbolic_SeqSBAIJ(Mat A,IS perm,PetscReal f,Mat *B) 1749b5e25fSSatish Balay { 1849b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b; 19cb718733SHong Zhang int *rip,ierr,i,mbs = a->mbs,*ai,*aj; 20066653e3SSatish Balay int *jutmp,bs = a->bs,bs2=a->bs2; 21066653e3SSatish Balay int m,nzi,realloc = 0; 22066653e3SSatish Balay int *jl,*q,jumin,jmin,jmax,juptr,nzk,qm,*iu,*ju,k,j,vj,umax,maxadd; 23cb718733SHong Zhang /* PetscTruth ident; */ 2449b5e25fSSatish Balay 2549b5e25fSSatish Balay PetscFunctionBegin; 2677f73120SHong Zhang PetscValidHeaderSpecific(perm,IS_COOKIE); 2729bbc08cSBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_ARG_WRONG,"matrix must be square"); 282d007305SHong Zhang 29cb718733SHong Zhang /* check whether perm is the identity mapping */ 30cb718733SHong Zhang /* 31cb718733SHong Zhang ierr = ISView(perm, VIEWER_STDOUT_SELF);CHKERRA(ierr); 32cb718733SHong Zhang ierr = ISIdentity(perm,&ident);CHKERRQ(ierr); 33cb718733SHong Zhang printf("ident = %d\n", ident); 34cb718733SHong Zhang */ 35cb718733SHong Zhang ierr = ISGetIndices(perm,&rip);CHKERRQ(ierr); 36cb718733SHong Zhang for (i=0; i<mbs; i++){ 37cb718733SHong Zhang if (rip[i] != i){ 38cb718733SHong Zhang a->permute = PETSC_TRUE; 39cb718733SHong Zhang /* printf("non-trivial perm\n"); */ 40cb718733SHong Zhang break; 4149a6740bSHong Zhang } 42cb718733SHong Zhang } 432d007305SHong Zhang 44cb718733SHong Zhang if (!a->permute){ /* without permutation */ 452d007305SHong Zhang ai = a->i; aj = a->j; 462d007305SHong Zhang } else { /* non-trivial permutation */ 472d007305SHong Zhang ierr = MatReorderingSeqSBAIJ(A, perm);CHKERRA(ierr); 482d007305SHong Zhang ai = a->inew; aj = a->jnew; 492d007305SHong Zhang } 502d007305SHong Zhang 5149b5e25fSSatish Balay /* initialization */ 5249b5e25fSSatish Balay /* Don't know how many column pointers are needed so estimate. 5349b5e25fSSatish Balay Use Modified Sparse Row storage for u and ju, see Sasd pp.85 */ 549f9cb213SHong Zhang iu = (int*)PetscMalloc((mbs+1)*sizeof(int));CHKPTRQ(iu); 5549b5e25fSSatish Balay umax = (int)(f*ai[mbs] + 1); umax += mbs + 1; 569f9cb213SHong Zhang ju = (int*)PetscMalloc(umax*sizeof(int));CHKPTRQ(ju); 5749b5e25fSSatish Balay iu[0] = mbs+1; 5849b5e25fSSatish Balay juptr = mbs; 5949b5e25fSSatish Balay jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 6049b5e25fSSatish Balay q = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(q); 6149b5e25fSSatish Balay for (i=0; i<mbs; i++){ 6249b5e25fSSatish Balay jl[i] = mbs; q[i] = 0; 6349b5e25fSSatish Balay } 6449b5e25fSSatish Balay 6549b5e25fSSatish Balay /* for each row k */ 6649b5e25fSSatish Balay for (k=0; k<mbs; k++){ 6749b5e25fSSatish Balay nzk = 0; /* num. of nz blocks in k-th block row with diagonal block excluded */ 6849b5e25fSSatish Balay q[k] = mbs; 6949b5e25fSSatish Balay /* initialize nonzero structure of k-th row to row rip[k] of A */ 7049b5e25fSSatish Balay jmin = ai[rip[k]]; 7149b5e25fSSatish Balay jmax = ai[rip[k]+1]; 7249b5e25fSSatish Balay for (j=jmin; j<jmax; j++){ 73cb718733SHong Zhang vj = rip[aj[j]]; /* col. value */ 7449b5e25fSSatish Balay if(vj > k){ 7549b5e25fSSatish Balay qm = k; 7649b5e25fSSatish Balay do { 7749b5e25fSSatish Balay m = qm; qm = q[m]; 7849b5e25fSSatish Balay } while(qm < vj); 7949b5e25fSSatish Balay if (qm == vj) { 8049b5e25fSSatish Balay printf(" error: duplicate entry in A\n"); break; 8149b5e25fSSatish Balay } 8249b5e25fSSatish Balay nzk++; 8349b5e25fSSatish Balay q[m] = vj; 8449b5e25fSSatish Balay q[vj] = qm; 8549b5e25fSSatish Balay } /* if(vj > k) */ 8649b5e25fSSatish Balay } /* for (j=jmin; j<jmax; j++) */ 8749b5e25fSSatish Balay 8849b5e25fSSatish Balay /* modify nonzero structure of k-th row by computing fill-in 8949b5e25fSSatish Balay for each row i to be merged in */ 9049b5e25fSSatish Balay i = k; 9149b5e25fSSatish Balay i = jl[i]; /* next pivot row (== mbs for symbolic factorization) */ 9249b5e25fSSatish Balay /* printf(" next pivot row i=%d\n",i); */ 9349b5e25fSSatish Balay while (i < mbs){ 9449b5e25fSSatish Balay /* merge row i into k-th row */ 9549b5e25fSSatish Balay nzi = iu[i+1] - (iu[i]+1); 9649b5e25fSSatish Balay jmin = iu[i] + 1; jmax = iu[i] + nzi; 9749b5e25fSSatish Balay qm = k; 9849b5e25fSSatish Balay for (j=jmin; j<jmax+1; j++){ 9949b5e25fSSatish Balay vj = ju[j]; 10049b5e25fSSatish Balay do { 10149b5e25fSSatish Balay m = qm; qm = q[m]; 10249b5e25fSSatish Balay } while (qm < vj); 10349b5e25fSSatish Balay if (qm != vj){ 10449b5e25fSSatish Balay nzk++; q[m] = vj; q[vj] = qm; qm = vj; 10549b5e25fSSatish Balay } 10649b5e25fSSatish Balay } 10749b5e25fSSatish Balay i = jl[i]; /* next pivot row */ 10849b5e25fSSatish Balay } 10949b5e25fSSatish Balay 11049b5e25fSSatish Balay /* add k to row list for first nonzero element in k-th row */ 11149b5e25fSSatish Balay if (nzk > 0){ 11249b5e25fSSatish Balay i = q[k]; /* col value of first nonzero element in U(k, k+1:mbs-1) */ 11349b5e25fSSatish Balay jl[k] = jl[i]; jl[i] = k; 11449b5e25fSSatish Balay } 11549b5e25fSSatish Balay iu[k+1] = iu[k] + nzk; /* printf(" iu[%d]=%d, umax=%d\n", k+1, iu[k+1],umax);*/ 11649b5e25fSSatish Balay 11749b5e25fSSatish Balay /* allocate more space to ju if needed */ 11849b5e25fSSatish Balay if (iu[k+1] > umax) { printf("allocate more space, iu[%d]=%d > umax=%d\n",k+1, iu[k+1],umax); 11949b5e25fSSatish Balay /* estimate how much additional space we will need */ 12049b5e25fSSatish Balay /* use the strategy suggested by David Hysom <hysom@perch-t.icase.edu> */ 12149b5e25fSSatish Balay /* just double the memory each time */ 12249b5e25fSSatish Balay maxadd = umax; 12349b5e25fSSatish Balay if (maxadd < nzk) maxadd = (mbs-k)*(nzk+1)/2; 12449b5e25fSSatish Balay umax += maxadd; 12549b5e25fSSatish Balay 1269f9cb213SHong Zhang /* allocate a longer ju */ 12749b5e25fSSatish Balay jutmp = (int*)PetscMalloc(umax*sizeof(int));CHKPTRQ(jutmp); 12849b5e25fSSatish Balay ierr = PetscMemcpy(jutmp,ju,iu[k]*sizeof(int));CHKERRQ(ierr); 12949b5e25fSSatish Balay ierr = PetscFree(ju);CHKERRQ(ierr); 1309f9cb213SHong Zhang ju = jutmp; 13149b5e25fSSatish Balay realloc++; /* count how many times we realloc */ 13249b5e25fSSatish Balay } 13349b5e25fSSatish Balay 13449b5e25fSSatish Balay /* save nonzero structure of k-th row in ju */ 13549b5e25fSSatish Balay i=k; 13649b5e25fSSatish Balay jumin = juptr + 1; juptr += nzk; 13749b5e25fSSatish Balay for (j=jumin; j<juptr+1; j++){ 13849b5e25fSSatish Balay i=q[i]; 13949b5e25fSSatish Balay ju[j]=i; 14049b5e25fSSatish Balay } 14177f73120SHong Zhang } 14249b5e25fSSatish Balay 14349b5e25fSSatish Balay if (ai[mbs] != 0) { 14449b5e25fSSatish Balay PetscReal af = ((PetscReal)iu[mbs])/((PetscReal)ai[mbs]); 1456f9a564bSHong Zhang PLogInfo(A,"MatCholeskyFactorSymbolic_SeqSBAIJ:Reallocs %d Fill ratio:given %g needed %g\n",realloc,f,af); 1466f9a564bSHong Zhang PLogInfo(A,"MatCholeskyFactorSymbolic_SeqSBAIJ:Run with -pc_lu_fill %g or use \n",af); 1476f9a564bSHong Zhang PLogInfo(A,"MatCholeskyFactorSymbolic_SeqSBAIJ:PCLUSetFill(pc,%g);\n",af); 1486f9a564bSHong Zhang PLogInfo(A,"MatCholeskyFactorSymbolic_SeqSBAIJ:for best performance.\n"); 14949b5e25fSSatish Balay } else { 1506f9a564bSHong Zhang PLogInfo(A,"MatCholeskyFactorSymbolic_SeqSBAIJ:Empty matrix.\n"); 15149b5e25fSSatish Balay } 15249b5e25fSSatish Balay 15377f73120SHong Zhang ierr = ISRestoreIndices(perm,&rip);CHKERRQ(ierr); 15449b5e25fSSatish Balay ierr = PetscFree(q);CHKERRQ(ierr); 15549b5e25fSSatish Balay ierr = PetscFree(jl);CHKERRQ(ierr); 15649b5e25fSSatish Balay 15749b5e25fSSatish Balay /* put together the new matrix */ 15849b5e25fSSatish Balay ierr = MatCreateSeqSBAIJ(A->comm,bs,bs*mbs,bs*mbs,0,PETSC_NULL,B);CHKERRQ(ierr); 1593d840bdaSHong Zhang /* PLogObjectParent(*B,iperm); */ 16049b5e25fSSatish Balay b = (Mat_SeqSBAIJ*)(*B)->data; 16149b5e25fSSatish Balay ierr = PetscFree(b->imax);CHKERRQ(ierr); 16249b5e25fSSatish Balay b->singlemalloc = PETSC_FALSE; 16349b5e25fSSatish Balay /* the next line frees the default space generated by the Create() */ 16449b5e25fSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); 16549b5e25fSSatish Balay ierr = PetscFree(b->ilen);CHKERRQ(ierr); 16649b5e25fSSatish Balay b->a = (MatScalar*)PetscMalloc((iu[mbs]+1)*sizeof(MatScalar)*bs2);CHKPTRQ(b->a); 16749b5e25fSSatish Balay b->j = ju; 16849b5e25fSSatish Balay b->i = iu; 16949b5e25fSSatish Balay b->diag = 0; 17049b5e25fSSatish Balay b->ilen = 0; 17149b5e25fSSatish Balay b->imax = 0; 17277f73120SHong Zhang b->row = perm; 17377f73120SHong Zhang ierr = PetscObjectReference((PetscObject)perm);CHKERRQ(ierr); 174cb718733SHong Zhang b->icol = perm; 175cb718733SHong Zhang ierr = PetscObjectReference((PetscObject)perm);CHKERRQ(ierr); 17649b5e25fSSatish Balay b->solve_work = (Scalar*)PetscMalloc((bs*mbs+bs)*sizeof(Scalar));CHKPTRQ(b->solve_work); 17749b5e25fSSatish Balay /* In b structure: Free imax, ilen, old a, old j. 17849b5e25fSSatish Balay Allocate idnew, solve_work, new a, new j */ 17949b5e25fSSatish Balay PLogObjectMemory(*B,(iu[mbs]-mbs)*(sizeof(int)+sizeof(MatScalar))); 18049b5e25fSSatish Balay b->s_maxnz = b->s_nz = iu[mbs]; 18149b5e25fSSatish Balay 1825c0bcdfcSHong Zhang (*B)->factor = FACTOR_CHOLESKY; 18349b5e25fSSatish Balay (*B)->info.factor_mallocs = realloc; 18449b5e25fSSatish Balay (*B)->info.fill_ratio_given = f; 18549b5e25fSSatish Balay if (ai[mbs] != 0) { 18649b5e25fSSatish Balay (*B)->info.fill_ratio_needed = ((PetscReal)iu[mbs])/((PetscReal)ai[mbs]); 18749b5e25fSSatish Balay } else { 18849b5e25fSSatish Balay (*B)->info.fill_ratio_needed = 0.0; 18949b5e25fSSatish Balay } 1905c0bcdfcSHong Zhang #ifdef TEMP 1915c0bcdfcSHong Zhang for (k=0; k<mbs; k++){ 1925c0bcdfcSHong Zhang nzk = b->i[k+1] - b->i[k]; 1935c0bcdfcSHong Zhang printf("\n b->i[%d]: %d, nzk: %d\n",k,b->i[k],nzk); 1945c0bcdfcSHong Zhang jmin = b->i[k]; jmax = b->i[k+1]; 1955c0bcdfcSHong Zhang for (j=jmin; j<jmax; j++){ 1965c0bcdfcSHong Zhang printf(" %d,",b->j[j]); 1975c0bcdfcSHong Zhang } 1985c0bcdfcSHong Zhang } 1995c0bcdfcSHong Zhang #endif 20049b5e25fSSatish Balay PetscFunctionReturn(0); 20149b5e25fSSatish Balay } 20249b5e25fSSatish Balay 20349b5e25fSSatish Balay #undef __FUNC__ 2046f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_N" 2056f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_N(Mat A,Mat *B) 20649b5e25fSSatish Balay { 20749b5e25fSSatish Balay Mat C = *B; 20849b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 20949b5e25fSSatish Balay IS isrow = b->row,isicol = b->icol; 21049b5e25fSSatish Balay int *r,*ic,ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 21149b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row,bslog,*ai=a->i,*aj=a->j,k,flg; 21249b5e25fSSatish Balay int *diag_offset=b->diag,diag,bs=a->bs,bs2 = a->bs2,*v_pivots,*pj; 21349b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a,*pv,*v,*rtmp,*multiplier,*v_work,*pc,*w; 21449b5e25fSSatish Balay 21549b5e25fSSatish Balay PetscFunctionBegin; 21649b5e25fSSatish Balay ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr); 21749b5e25fSSatish Balay ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr); 21849b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(bs2*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 21949b5e25fSSatish Balay ierr = PetscMemzero(rtmp,bs2*(n+1)*sizeof(MatScalar));CHKERRQ(ierr); 22049b5e25fSSatish Balay /* generate work space needed by dense LU factorization */ 22149b5e25fSSatish Balay v_work = (MatScalar*)PetscMalloc(bs*sizeof(int) + (bs+bs2)*sizeof(MatScalar));CHKPTRQ(v_work); 22249b5e25fSSatish Balay multiplier = v_work + bs; 22349b5e25fSSatish Balay v_pivots = (int*)(multiplier + bs2); 22449b5e25fSSatish Balay 22549b5e25fSSatish Balay /* flops in while loop */ 22649b5e25fSSatish Balay bslog = 2*bs*bs2; 22749b5e25fSSatish Balay 22849b5e25fSSatish Balay for (i=0; i<n; i++) { 22949b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 23049b5e25fSSatish Balay ajtmp = bj + bi[i]; 23149b5e25fSSatish Balay for (j=0; j<nz; j++) { 23249b5e25fSSatish Balay ierr = PetscMemzero(rtmp+bs2*ajtmp[j],bs2*sizeof(MatScalar));CHKERRQ(ierr); 23349b5e25fSSatish Balay } 23449b5e25fSSatish Balay /* load in initial (unfactored row) */ 23549b5e25fSSatish Balay nz = ai[r[i]+1] - ai[r[i]]; 23649b5e25fSSatish Balay ajtmpold = aj + ai[r[i]]; 23749b5e25fSSatish Balay v = aa + bs2*ai[r[i]]; 23849b5e25fSSatish Balay for (j=0; j<nz; j++) { 23949b5e25fSSatish Balay ierr = PetscMemcpy(rtmp+bs2*ic[ajtmpold[j]],v+bs2*j,bs2*sizeof(MatScalar));CHKERRQ(ierr); 24049b5e25fSSatish Balay } 24149b5e25fSSatish Balay row = *ajtmp++; 24249b5e25fSSatish Balay while (row < i) { 24349b5e25fSSatish Balay pc = rtmp + bs2*row; 24449b5e25fSSatish Balay /* if (*pc) { */ 24549b5e25fSSatish Balay for (flg=0,k=0; k<bs2; k++) { if (pc[k]!=0.0) { flg =1; break; }} 24649b5e25fSSatish Balay if (flg) { 24749b5e25fSSatish Balay pv = ba + bs2*diag_offset[row]; 24849b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 24949b5e25fSSatish Balay Kernel_A_gets_A_times_B(bs,pc,pv,multiplier); 25049b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 25149b5e25fSSatish Balay pv += bs2; 25249b5e25fSSatish Balay for (j=0; j<nz; j++) { 25349b5e25fSSatish Balay Kernel_A_gets_A_minus_B_times_C(bs,rtmp+bs2*pj[j],pc,pv+bs2*j); 25449b5e25fSSatish Balay } 25549b5e25fSSatish Balay PLogFlops(bslog*(nz+1)-bs); 25649b5e25fSSatish Balay } 25749b5e25fSSatish Balay row = *ajtmp++; 25849b5e25fSSatish Balay } 25949b5e25fSSatish Balay /* finished row so stick it into b->a */ 26049b5e25fSSatish Balay pv = ba + bs2*bi[i]; 26149b5e25fSSatish Balay pj = bj + bi[i]; 26249b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 26349b5e25fSSatish Balay for (j=0; j<nz; j++) { 26449b5e25fSSatish Balay ierr = PetscMemcpy(pv+bs2*j,rtmp+bs2*pj[j],bs2*sizeof(MatScalar));CHKERRQ(ierr); 26549b5e25fSSatish Balay } 26649b5e25fSSatish Balay diag = diag_offset[i] - bi[i]; 26749b5e25fSSatish Balay /* invert diagonal block */ 26849b5e25fSSatish Balay w = pv + bs2*diag; 26949b5e25fSSatish Balay Kernel_A_gets_inverse_A(bs,w,v_pivots,v_work); 27049b5e25fSSatish Balay } 27149b5e25fSSatish Balay 27249b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 27349b5e25fSSatish Balay ierr = PetscFree(v_work);CHKERRQ(ierr); 27449b5e25fSSatish Balay ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr); 27549b5e25fSSatish Balay ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr); 27649b5e25fSSatish Balay C->factor = FACTOR_LU; 27749b5e25fSSatish Balay C->assembled = PETSC_TRUE; 27849b5e25fSSatish Balay PLogFlops(1.3333*bs*bs2*b->mbs); /* from inverting diagonal blocks */ 27949b5e25fSSatish Balay PetscFunctionReturn(0); 28049b5e25fSSatish Balay } 281d4edadd4SHong Zhang 28249b5e25fSSatish Balay /* 28349b5e25fSSatish Balay Version for when blocks are 7 by 7 28449b5e25fSSatish Balay */ 28549b5e25fSSatish Balay #undef __FUNC__ 2866f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_7" 2876f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_7(Mat A,Mat *B) 28849b5e25fSSatish Balay { 28949b5e25fSSatish Balay Mat C = *B; 29049b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 29149b5e25fSSatish Balay IS isrow = b->row,isicol = b->icol; 29249b5e25fSSatish Balay int *r,*ic,ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 29349b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 29449b5e25fSSatish Balay int *diag_offset = b->diag,idx,*ai=a->i,*aj=a->j,*pj; 29549b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 29649b5e25fSSatish Balay MatScalar p1,p2,p3,p4,m1,m2,m3,m4,m5,m6,m7,m8,m9,x1,x2,x3,x4; 29749b5e25fSSatish Balay MatScalar p5,p6,p7,p8,p9,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15,x16; 29849b5e25fSSatish Balay MatScalar x17,x18,x19,x20,x21,x22,x23,x24,x25,p10,p11,p12,p13,p14; 29949b5e25fSSatish Balay MatScalar p15,p16,p17,p18,p19,p20,p21,p22,p23,p24,p25,m10,m11,m12; 30049b5e25fSSatish Balay MatScalar m13,m14,m15,m16,m17,m18,m19,m20,m21,m22,m23,m24,m25; 30149b5e25fSSatish Balay MatScalar p26,p27,p28,p29,p30,p31,p32,p33,p34,p35,p36; 30249b5e25fSSatish Balay MatScalar p37,p38,p39,p40,p41,p42,p43,p44,p45,p46,p47,p48,p49; 30349b5e25fSSatish Balay MatScalar x26,x27,x28,x29,x30,x31,x32,x33,x34,x35,x36; 30449b5e25fSSatish Balay MatScalar x37,x38,x39,x40,x41,x42,x43,x44,x45,x46,x47,x48,x49; 30549b5e25fSSatish Balay MatScalar m26,m27,m28,m29,m30,m31,m32,m33,m34,m35,m36; 30649b5e25fSSatish Balay MatScalar m37,m38,m39,m40,m41,m42,m43,m44,m45,m46,m47,m48,m49; 30749b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 30849b5e25fSSatish Balay 30949b5e25fSSatish Balay PetscFunctionBegin; 31049b5e25fSSatish Balay ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr); 31149b5e25fSSatish Balay ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr); 31249b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(49*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 31349b5e25fSSatish Balay 31449b5e25fSSatish Balay for (i=0; i<n; i++) { 31549b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 31649b5e25fSSatish Balay ajtmp = bj + bi[i]; 31749b5e25fSSatish Balay for (j=0; j<nz; j++) { 31849b5e25fSSatish Balay x = rtmp+49*ajtmp[j]; 31949b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = x[4] = x[5] = x[6] = x[7] = x[8] = x[9] = 0.0; 32049b5e25fSSatish Balay x[10] = x[11] = x[12] = x[13] = x[14] = x[15] = x[16] = x[17] = 0.0; 32149b5e25fSSatish Balay x[18] = x[19] = x[20] = x[21] = x[22] = x[23] = x[24] = x[25] = 0.0 ; 32249b5e25fSSatish Balay x[26] = x[27] = x[28] = x[29] = x[30] = x[31] = x[32] = x[33] = 0.0 ; 32349b5e25fSSatish Balay x[34] = x[35] = x[36] = x[37] = x[38] = x[39] = x[40] = x[41] = 0.0 ; 32449b5e25fSSatish Balay x[42] = x[43] = x[44] = x[45] = x[46] = x[47] = x[48] = 0.0 ; 32549b5e25fSSatish Balay } 32649b5e25fSSatish Balay /* load in initial (unfactored row) */ 32749b5e25fSSatish Balay idx = r[i]; 32849b5e25fSSatish Balay nz = ai[idx+1] - ai[idx]; 32949b5e25fSSatish Balay ajtmpold = aj + ai[idx]; 33049b5e25fSSatish Balay v = aa + 49*ai[idx]; 33149b5e25fSSatish Balay for (j=0; j<nz; j++) { 33249b5e25fSSatish Balay x = rtmp+49*ic[ajtmpold[j]]; 33349b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 33449b5e25fSSatish Balay x[4] = v[4]; x[5] = v[5]; x[6] = v[6]; x[7] = v[7]; 33549b5e25fSSatish Balay x[8] = v[8]; x[9] = v[9]; x[10] = v[10]; x[11] = v[11]; 33649b5e25fSSatish Balay x[12] = v[12]; x[13] = v[13]; x[14] = v[14]; x[15] = v[15]; 33749b5e25fSSatish Balay x[16] = v[16]; x[17] = v[17]; x[18] = v[18]; x[19] = v[19]; 33849b5e25fSSatish Balay x[20] = v[20]; x[21] = v[21]; x[22] = v[22]; x[23] = v[23]; 33949b5e25fSSatish Balay x[24] = v[24]; x[25] = v[25]; x[26] = v[26]; x[27] = v[27]; 34049b5e25fSSatish Balay x[28] = v[28]; x[29] = v[29]; x[30] = v[30]; x[31] = v[31]; 34149b5e25fSSatish Balay x[32] = v[32]; x[33] = v[33]; x[34] = v[34]; x[35] = v[35]; 34249b5e25fSSatish Balay x[36] = v[36]; x[37] = v[37]; x[38] = v[38]; x[39] = v[39]; 34349b5e25fSSatish Balay x[40] = v[40]; x[41] = v[41]; x[42] = v[42]; x[43] = v[43]; 34449b5e25fSSatish Balay x[44] = v[44]; x[45] = v[45]; x[46] = v[46]; x[47] = v[47]; 34549b5e25fSSatish Balay x[48] = v[48]; 34649b5e25fSSatish Balay v += 49; 34749b5e25fSSatish Balay } 34849b5e25fSSatish Balay row = *ajtmp++; 34949b5e25fSSatish Balay while (row < i) { 35049b5e25fSSatish Balay pc = rtmp + 49*row; 35149b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 35249b5e25fSSatish Balay p5 = pc[4]; p6 = pc[5]; p7 = pc[6]; p8 = pc[7]; 35349b5e25fSSatish Balay p9 = pc[8]; p10 = pc[9]; p11 = pc[10]; p12 = pc[11]; 35449b5e25fSSatish Balay p13 = pc[12]; p14 = pc[13]; p15 = pc[14]; p16 = pc[15]; 35549b5e25fSSatish Balay p17 = pc[16]; p18 = pc[17]; p19 = pc[18]; p20 = pc[19]; 35649b5e25fSSatish Balay p21 = pc[20]; p22 = pc[21]; p23 = pc[22]; p24 = pc[23]; 35749b5e25fSSatish Balay p25 = pc[24]; p26 = pc[25]; p27 = pc[26]; p28 = pc[27]; 35849b5e25fSSatish Balay p29 = pc[28]; p30 = pc[29]; p31 = pc[30]; p32 = pc[31]; 35949b5e25fSSatish Balay p33 = pc[32]; p34 = pc[33]; p35 = pc[34]; p36 = pc[35]; 36049b5e25fSSatish Balay p37 = pc[36]; p38 = pc[37]; p39 = pc[38]; p40 = pc[39]; 36149b5e25fSSatish Balay p41 = pc[40]; p42 = pc[41]; p43 = pc[42]; p44 = pc[43]; 36249b5e25fSSatish Balay p45 = pc[44]; p46 = pc[45]; p47 = pc[46]; p48 = pc[47]; 36349b5e25fSSatish Balay p49 = pc[48]; 36449b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0 || 36549b5e25fSSatish Balay p5 != 0.0 || p6 != 0.0 || p7 != 0.0 || p8 != 0.0 || 36649b5e25fSSatish Balay p9 != 0.0 || p10 != 0.0 || p11 != 0.0 || p12 != 0.0 || 36749b5e25fSSatish Balay p13 != 0.0 || p14 != 0.0 || p15 != 0.0 || p16 != 0.0 || 36849b5e25fSSatish Balay p17 != 0.0 || p18 != 0.0 || p19 != 0.0 || p20 != 0.0 || 36949b5e25fSSatish Balay p21 != 0.0 || p22 != 0.0 || p23 != 0.0 || p24 != 0.0 || 37049b5e25fSSatish Balay p25 != 0.0 || p26 != 0.0 || p27 != 0.0 || p28 != 0.0 || 37149b5e25fSSatish Balay p29 != 0.0 || p30 != 0.0 || p31 != 0.0 || p32 != 0.0 || 37249b5e25fSSatish Balay p33 != 0.0 || p34 != 0.0 || p35 != 0.0 || p36 != 0.0 || 37349b5e25fSSatish Balay p37 != 0.0 || p38 != 0.0 || p39 != 0.0 || p40 != 0.0 || 37449b5e25fSSatish Balay p41 != 0.0 || p42 != 0.0 || p43 != 0.0 || p44 != 0.0 || 37549b5e25fSSatish Balay p45 != 0.0 || p46 != 0.0 || p47 != 0.0 || p48 != 0.0 || 37649b5e25fSSatish Balay p49 != 0.0) { 37749b5e25fSSatish Balay pv = ba + 49*diag_offset[row]; 37849b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 37949b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 38049b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; 38149b5e25fSSatish Balay x9 = pv[8]; x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; 38249b5e25fSSatish Balay x13 = pv[12]; x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 38349b5e25fSSatish Balay x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; x20 = pv[19]; 38449b5e25fSSatish Balay x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 38549b5e25fSSatish Balay x25 = pv[24]; x26 = pv[25]; x27 = pv[26]; x28 = pv[27]; 38649b5e25fSSatish Balay x29 = pv[28]; x30 = pv[29]; x31 = pv[30]; x32 = pv[31]; 38749b5e25fSSatish Balay x33 = pv[32]; x34 = pv[33]; x35 = pv[34]; x36 = pv[35]; 38849b5e25fSSatish Balay x37 = pv[36]; x38 = pv[37]; x39 = pv[38]; x40 = pv[39]; 38949b5e25fSSatish Balay x41 = pv[40]; x42 = pv[41]; x43 = pv[42]; x44 = pv[43]; 39049b5e25fSSatish Balay x45 = pv[44]; x46 = pv[45]; x47 = pv[46]; x48 = pv[47]; 39149b5e25fSSatish Balay x49 = pv[48]; 39249b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p8*x2 + p15*x3 + p22*x4 + p29*x5 + p36*x6 + p43*x7; 39349b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p9*x2 + p16*x3 + p23*x4 + p30*x5 + p37*x6 + p44*x7; 39449b5e25fSSatish Balay pc[2] = m3 = p3*x1 + p10*x2 + p17*x3 + p24*x4 + p31*x5 + p38*x6 + p45*x7; 39549b5e25fSSatish Balay pc[3] = m4 = p4*x1 + p11*x2 + p18*x3 + p25*x4 + p32*x5 + p39*x6 + p46*x7; 39649b5e25fSSatish Balay pc[4] = m5 = p5*x1 + p12*x2 + p19*x3 + p26*x4 + p33*x5 + p40*x6 + p47*x7; 39749b5e25fSSatish Balay pc[5] = m6 = p6*x1 + p13*x2 + p20*x3 + p27*x4 + p34*x5 + p41*x6 + p48*x7; 39849b5e25fSSatish Balay pc[6] = m7 = p7*x1 + p14*x2 + p21*x3 + p28*x4 + p35*x5 + p42*x6 + p49*x7; 39949b5e25fSSatish Balay 40049b5e25fSSatish Balay pc[7] = m8 = p1*x8 + p8*x9 + p15*x10 + p22*x11 + p29*x12 + p36*x13 + p43*x14; 40149b5e25fSSatish Balay pc[8] = m9 = p2*x8 + p9*x9 + p16*x10 + p23*x11 + p30*x12 + p37*x13 + p44*x14; 40249b5e25fSSatish Balay pc[9] = m10 = p3*x8 + p10*x9 + p17*x10 + p24*x11 + p31*x12 + p38*x13 + p45*x14; 40349b5e25fSSatish Balay pc[10] = m11 = p4*x8 + p11*x9 + p18*x10 + p25*x11 + p32*x12 + p39*x13 + p46*x14; 40449b5e25fSSatish Balay pc[11] = m12 = p5*x8 + p12*x9 + p19*x10 + p26*x11 + p33*x12 + p40*x13 + p47*x14; 40549b5e25fSSatish Balay pc[12] = m13 = p6*x8 + p13*x9 + p20*x10 + p27*x11 + p34*x12 + p41*x13 + p48*x14; 40649b5e25fSSatish Balay pc[13] = m14 = p7*x8 + p14*x9 + p21*x10 + p28*x11 + p35*x12 + p42*x13 + p49*x14; 40749b5e25fSSatish Balay 40849b5e25fSSatish Balay pc[14] = m15 = p1*x15 + p8*x16 + p15*x17 + p22*x18 + p29*x19 + p36*x20 + p43*x21; 40949b5e25fSSatish Balay pc[15] = m16 = p2*x15 + p9*x16 + p16*x17 + p23*x18 + p30*x19 + p37*x20 + p44*x21; 41049b5e25fSSatish Balay pc[16] = m17 = p3*x15 + p10*x16 + p17*x17 + p24*x18 + p31*x19 + p38*x20 + p45*x21; 41149b5e25fSSatish Balay pc[17] = m18 = p4*x15 + p11*x16 + p18*x17 + p25*x18 + p32*x19 + p39*x20 + p46*x21; 41249b5e25fSSatish Balay pc[18] = m19 = p5*x15 + p12*x16 + p19*x17 + p26*x18 + p33*x19 + p40*x20 + p47*x21; 41349b5e25fSSatish Balay pc[19] = m20 = p6*x15 + p13*x16 + p20*x17 + p27*x18 + p34*x19 + p41*x20 + p48*x21; 41449b5e25fSSatish Balay pc[20] = m21 = p7*x15 + p14*x16 + p21*x17 + p28*x18 + p35*x19 + p42*x20 + p49*x21; 41549b5e25fSSatish Balay 41649b5e25fSSatish Balay pc[21] = m22 = p1*x22 + p8*x23 + p15*x24 + p22*x25 + p29*x26 + p36*x27 + p43*x28; 41749b5e25fSSatish Balay pc[22] = m23 = p2*x22 + p9*x23 + p16*x24 + p23*x25 + p30*x26 + p37*x27 + p44*x28; 41849b5e25fSSatish Balay pc[23] = m24 = p3*x22 + p10*x23 + p17*x24 + p24*x25 + p31*x26 + p38*x27 + p45*x28; 41949b5e25fSSatish Balay pc[24] = m25 = p4*x22 + p11*x23 + p18*x24 + p25*x25 + p32*x26 + p39*x27 + p46*x28; 42049b5e25fSSatish Balay pc[25] = m26 = p5*x22 + p12*x23 + p19*x24 + p26*x25 + p33*x26 + p40*x27 + p47*x28; 42149b5e25fSSatish Balay pc[26] = m27 = p6*x22 + p13*x23 + p20*x24 + p27*x25 + p34*x26 + p41*x27 + p48*x28; 42249b5e25fSSatish Balay pc[27] = m28 = p7*x22 + p14*x23 + p21*x24 + p28*x25 + p35*x26 + p42*x27 + p49*x28; 42349b5e25fSSatish Balay 42449b5e25fSSatish Balay pc[28] = m29 = p1*x29 + p8*x30 + p15*x31 + p22*x32 + p29*x33 + p36*x34 + p43*x35; 42549b5e25fSSatish Balay pc[29] = m30 = p2*x29 + p9*x30 + p16*x31 + p23*x32 + p30*x33 + p37*x34 + p44*x35; 42649b5e25fSSatish Balay pc[30] = m31 = p3*x29 + p10*x30 + p17*x31 + p24*x32 + p31*x33 + p38*x34 + p45*x35; 42749b5e25fSSatish Balay pc[31] = m32 = p4*x29 + p11*x30 + p18*x31 + p25*x32 + p32*x33 + p39*x34 + p46*x35; 42849b5e25fSSatish Balay pc[32] = m33 = p5*x29 + p12*x30 + p19*x31 + p26*x32 + p33*x33 + p40*x34 + p47*x35; 42949b5e25fSSatish Balay pc[33] = m34 = p6*x29 + p13*x30 + p20*x31 + p27*x32 + p34*x33 + p41*x34 + p48*x35; 43049b5e25fSSatish Balay pc[34] = m35 = p7*x29 + p14*x30 + p21*x31 + p28*x32 + p35*x33 + p42*x34 + p49*x35; 43149b5e25fSSatish Balay 43249b5e25fSSatish Balay pc[35] = m36 = p1*x36 + p8*x37 + p15*x38 + p22*x39 + p29*x40 + p36*x41 + p43*x42; 43349b5e25fSSatish Balay pc[36] = m37 = p2*x36 + p9*x37 + p16*x38 + p23*x39 + p30*x40 + p37*x41 + p44*x42; 43449b5e25fSSatish Balay pc[37] = m38 = p3*x36 + p10*x37 + p17*x38 + p24*x39 + p31*x40 + p38*x41 + p45*x42; 43549b5e25fSSatish Balay pc[38] = m39 = p4*x36 + p11*x37 + p18*x38 + p25*x39 + p32*x40 + p39*x41 + p46*x42; 43649b5e25fSSatish Balay pc[39] = m40 = p5*x36 + p12*x37 + p19*x38 + p26*x39 + p33*x40 + p40*x41 + p47*x42; 43749b5e25fSSatish Balay pc[40] = m41 = p6*x36 + p13*x37 + p20*x38 + p27*x39 + p34*x40 + p41*x41 + p48*x42; 43849b5e25fSSatish Balay pc[41] = m42 = p7*x36 + p14*x37 + p21*x38 + p28*x39 + p35*x40 + p42*x41 + p49*x42; 43949b5e25fSSatish Balay 44049b5e25fSSatish Balay pc[42] = m43 = p1*x43 + p8*x44 + p15*x45 + p22*x46 + p29*x47 + p36*x48 + p43*x49; 44149b5e25fSSatish Balay pc[43] = m44 = p2*x43 + p9*x44 + p16*x45 + p23*x46 + p30*x47 + p37*x48 + p44*x49; 44249b5e25fSSatish Balay pc[44] = m45 = p3*x43 + p10*x44 + p17*x45 + p24*x46 + p31*x47 + p38*x48 + p45*x49; 44349b5e25fSSatish Balay pc[45] = m46 = p4*x43 + p11*x44 + p18*x45 + p25*x46 + p32*x47 + p39*x48 + p46*x49; 44449b5e25fSSatish Balay pc[46] = m47 = p5*x43 + p12*x44 + p19*x45 + p26*x46 + p33*x47 + p40*x48 + p47*x49; 44549b5e25fSSatish Balay pc[47] = m48 = p6*x43 + p13*x44 + p20*x45 + p27*x46 + p34*x47 + p41*x48 + p48*x49; 44649b5e25fSSatish Balay pc[48] = m49 = p7*x43 + p14*x44 + p21*x45 + p28*x46 + p35*x47 + p42*x48 + p49*x49; 44749b5e25fSSatish Balay 44849b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 44949b5e25fSSatish Balay pv += 49; 45049b5e25fSSatish Balay for (j=0; j<nz; j++) { 45149b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 45249b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; 45349b5e25fSSatish Balay x9 = pv[8]; x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; 45449b5e25fSSatish Balay x13 = pv[12]; x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 45549b5e25fSSatish Balay x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; x20 = pv[19]; 45649b5e25fSSatish Balay x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 45749b5e25fSSatish Balay x25 = pv[24]; x26 = pv[25]; x27 = pv[26]; x28 = pv[27]; 45849b5e25fSSatish Balay x29 = pv[28]; x30 = pv[29]; x31 = pv[30]; x32 = pv[31]; 45949b5e25fSSatish Balay x33 = pv[32]; x34 = pv[33]; x35 = pv[34]; x36 = pv[35]; 46049b5e25fSSatish Balay x37 = pv[36]; x38 = pv[37]; x39 = pv[38]; x40 = pv[39]; 46149b5e25fSSatish Balay x41 = pv[40]; x42 = pv[41]; x43 = pv[42]; x44 = pv[43]; 46249b5e25fSSatish Balay x45 = pv[44]; x46 = pv[45]; x47 = pv[46]; x48 = pv[47]; 46349b5e25fSSatish Balay x49 = pv[48]; 46449b5e25fSSatish Balay x = rtmp + 49*pj[j]; 46549b5e25fSSatish Balay x[0] -= m1*x1 + m8*x2 + m15*x3 + m22*x4 + m29*x5 + m36*x6 + m43*x7; 46649b5e25fSSatish Balay x[1] -= m2*x1 + m9*x2 + m16*x3 + m23*x4 + m30*x5 + m37*x6 + m44*x7; 46749b5e25fSSatish Balay x[2] -= m3*x1 + m10*x2 + m17*x3 + m24*x4 + m31*x5 + m38*x6 + m45*x7; 46849b5e25fSSatish Balay x[3] -= m4*x1 + m11*x2 + m18*x3 + m25*x4 + m32*x5 + m39*x6 + m46*x7; 46949b5e25fSSatish Balay x[4] -= m5*x1 + m12*x2 + m19*x3 + m26*x4 + m33*x5 + m40*x6 + m47*x7; 47049b5e25fSSatish Balay x[5] -= m6*x1 + m13*x2 + m20*x3 + m27*x4 + m34*x5 + m41*x6 + m48*x7; 47149b5e25fSSatish Balay x[6] -= m7*x1 + m14*x2 + m21*x3 + m28*x4 + m35*x5 + m42*x6 + m49*x7; 47249b5e25fSSatish Balay 47349b5e25fSSatish Balay x[7] -= m1*x8 + m8*x9 + m15*x10 + m22*x11 + m29*x12 + m36*x13 + m43*x14; 47449b5e25fSSatish Balay x[8] -= m2*x8 + m9*x9 + m16*x10 + m23*x11 + m30*x12 + m37*x13 + m44*x14; 47549b5e25fSSatish Balay x[9] -= m3*x8 + m10*x9 + m17*x10 + m24*x11 + m31*x12 + m38*x13 + m45*x14; 47649b5e25fSSatish Balay x[10] -= m4*x8 + m11*x9 + m18*x10 + m25*x11 + m32*x12 + m39*x13 + m46*x14; 47749b5e25fSSatish Balay x[11] -= m5*x8 + m12*x9 + m19*x10 + m26*x11 + m33*x12 + m40*x13 + m47*x14; 47849b5e25fSSatish Balay x[12] -= m6*x8 + m13*x9 + m20*x10 + m27*x11 + m34*x12 + m41*x13 + m48*x14; 47949b5e25fSSatish Balay x[13] -= m7*x8 + m14*x9 + m21*x10 + m28*x11 + m35*x12 + m42*x13 + m49*x14; 48049b5e25fSSatish Balay 48149b5e25fSSatish Balay x[14] -= m1*x15 + m8*x16 + m15*x17 + m22*x18 + m29*x19 + m36*x20 + m43*x21; 48249b5e25fSSatish Balay x[15] -= m2*x15 + m9*x16 + m16*x17 + m23*x18 + m30*x19 + m37*x20 + m44*x21; 48349b5e25fSSatish Balay x[16] -= m3*x15 + m10*x16 + m17*x17 + m24*x18 + m31*x19 + m38*x20 + m45*x21; 48449b5e25fSSatish Balay x[17] -= m4*x15 + m11*x16 + m18*x17 + m25*x18 + m32*x19 + m39*x20 + m46*x21; 48549b5e25fSSatish Balay x[18] -= m5*x15 + m12*x16 + m19*x17 + m26*x18 + m33*x19 + m40*x20 + m47*x21; 48649b5e25fSSatish Balay x[19] -= m6*x15 + m13*x16 + m20*x17 + m27*x18 + m34*x19 + m41*x20 + m48*x21; 48749b5e25fSSatish Balay x[20] -= m7*x15 + m14*x16 + m21*x17 + m28*x18 + m35*x19 + m42*x20 + m49*x21; 48849b5e25fSSatish Balay 48949b5e25fSSatish Balay x[21] -= m1*x22 + m8*x23 + m15*x24 + m22*x25 + m29*x26 + m36*x27 + m43*x28; 49049b5e25fSSatish Balay x[22] -= m2*x22 + m9*x23 + m16*x24 + m23*x25 + m30*x26 + m37*x27 + m44*x28; 49149b5e25fSSatish Balay x[23] -= m3*x22 + m10*x23 + m17*x24 + m24*x25 + m31*x26 + m38*x27 + m45*x28; 49249b5e25fSSatish Balay x[24] -= m4*x22 + m11*x23 + m18*x24 + m25*x25 + m32*x26 + m39*x27 + m46*x28; 49349b5e25fSSatish Balay x[25] -= m5*x22 + m12*x23 + m19*x24 + m26*x25 + m33*x26 + m40*x27 + m47*x28; 49449b5e25fSSatish Balay x[26] -= m6*x22 + m13*x23 + m20*x24 + m27*x25 + m34*x26 + m41*x27 + m48*x28; 49549b5e25fSSatish Balay x[27] -= m7*x22 + m14*x23 + m21*x24 + m28*x25 + m35*x26 + m42*x27 + m49*x28; 49649b5e25fSSatish Balay 49749b5e25fSSatish Balay x[28] -= m1*x29 + m8*x30 + m15*x31 + m22*x32 + m29*x33 + m36*x34 + m43*x35; 49849b5e25fSSatish Balay x[29] -= m2*x29 + m9*x30 + m16*x31 + m23*x32 + m30*x33 + m37*x34 + m44*x35; 49949b5e25fSSatish Balay x[30] -= m3*x29 + m10*x30 + m17*x31 + m24*x32 + m31*x33 + m38*x34 + m45*x35; 50049b5e25fSSatish Balay x[31] -= m4*x29 + m11*x30 + m18*x31 + m25*x32 + m32*x33 + m39*x34 + m46*x35; 50149b5e25fSSatish Balay x[32] -= m5*x29 + m12*x30 + m19*x31 + m26*x32 + m33*x33 + m40*x34 + m47*x35; 50249b5e25fSSatish Balay x[33] -= m6*x29 + m13*x30 + m20*x31 + m27*x32 + m34*x33 + m41*x34 + m48*x35; 50349b5e25fSSatish Balay x[34] -= m7*x29 + m14*x30 + m21*x31 + m28*x32 + m35*x33 + m42*x34 + m49*x35; 50449b5e25fSSatish Balay 50549b5e25fSSatish Balay x[35] -= m1*x36 + m8*x37 + m15*x38 + m22*x39 + m29*x40 + m36*x41 + m43*x42; 50649b5e25fSSatish Balay x[36] -= m2*x36 + m9*x37 + m16*x38 + m23*x39 + m30*x40 + m37*x41 + m44*x42; 50749b5e25fSSatish Balay x[37] -= m3*x36 + m10*x37 + m17*x38 + m24*x39 + m31*x40 + m38*x41 + m45*x42; 50849b5e25fSSatish Balay x[38] -= m4*x36 + m11*x37 + m18*x38 + m25*x39 + m32*x40 + m39*x41 + m46*x42; 50949b5e25fSSatish Balay x[39] -= m5*x36 + m12*x37 + m19*x38 + m26*x39 + m33*x40 + m40*x41 + m47*x42; 51049b5e25fSSatish Balay x[40] -= m6*x36 + m13*x37 + m20*x38 + m27*x39 + m34*x40 + m41*x41 + m48*x42; 51149b5e25fSSatish Balay x[41] -= m7*x36 + m14*x37 + m21*x38 + m28*x39 + m35*x40 + m42*x41 + m49*x42; 51249b5e25fSSatish Balay 51349b5e25fSSatish Balay x[42] -= m1*x43 + m8*x44 + m15*x45 + m22*x46 + m29*x47 + m36*x48 + m43*x49; 51449b5e25fSSatish Balay x[43] -= m2*x43 + m9*x44 + m16*x45 + m23*x46 + m30*x47 + m37*x48 + m44*x49; 51549b5e25fSSatish Balay x[44] -= m3*x43 + m10*x44 + m17*x45 + m24*x46 + m31*x47 + m38*x48 + m45*x49; 51649b5e25fSSatish Balay x[45] -= m4*x43 + m11*x44 + m18*x45 + m25*x46 + m32*x47 + m39*x48 + m46*x49; 51749b5e25fSSatish Balay x[46] -= m5*x43 + m12*x44 + m19*x45 + m26*x46 + m33*x47 + m40*x48 + m47*x49; 51849b5e25fSSatish Balay x[47] -= m6*x43 + m13*x44 + m20*x45 + m27*x46 + m34*x47 + m41*x48 + m48*x49; 51949b5e25fSSatish Balay x[48] -= m7*x43 + m14*x44 + m21*x45 + m28*x46 + m35*x47 + m42*x48 + m49*x49; 52049b5e25fSSatish Balay pv += 49; 52149b5e25fSSatish Balay } 52249b5e25fSSatish Balay PLogFlops(686*nz+637); 52349b5e25fSSatish Balay } 52449b5e25fSSatish Balay row = *ajtmp++; 52549b5e25fSSatish Balay } 52649b5e25fSSatish Balay /* finished row so stick it into b->a */ 52749b5e25fSSatish Balay pv = ba + 49*bi[i]; 52849b5e25fSSatish Balay pj = bj + bi[i]; 52949b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 53049b5e25fSSatish Balay for (j=0; j<nz; j++) { 53149b5e25fSSatish Balay x = rtmp+49*pj[j]; 53249b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 53349b5e25fSSatish Balay pv[4] = x[4]; pv[5] = x[5]; pv[6] = x[6]; pv[7] = x[7]; 53449b5e25fSSatish Balay pv[8] = x[8]; pv[9] = x[9]; pv[10] = x[10]; pv[11] = x[11]; 53549b5e25fSSatish Balay pv[12] = x[12]; pv[13] = x[13]; pv[14] = x[14]; pv[15] = x[15]; 53649b5e25fSSatish Balay pv[16] = x[16]; pv[17] = x[17]; pv[18] = x[18]; pv[19] = x[19]; 53749b5e25fSSatish Balay pv[20] = x[20]; pv[21] = x[21]; pv[22] = x[22]; pv[23] = x[23]; 53849b5e25fSSatish Balay pv[24] = x[24]; pv[25] = x[25]; pv[26] = x[26]; pv[27] = x[27]; 53949b5e25fSSatish Balay pv[28] = x[28]; pv[29] = x[29]; pv[30] = x[30]; pv[31] = x[31]; 54049b5e25fSSatish Balay pv[32] = x[32]; pv[33] = x[33]; pv[34] = x[34]; pv[35] = x[35]; 54149b5e25fSSatish Balay pv[36] = x[36]; pv[37] = x[37]; pv[38] = x[38]; pv[39] = x[39]; 54249b5e25fSSatish Balay pv[40] = x[40]; pv[41] = x[41]; pv[42] = x[42]; pv[43] = x[43]; 54349b5e25fSSatish Balay pv[44] = x[44]; pv[45] = x[45]; pv[46] = x[46]; pv[47] = x[47]; 54449b5e25fSSatish Balay pv[48] = x[48]; 54549b5e25fSSatish Balay pv += 49; 54649b5e25fSSatish Balay } 54749b5e25fSSatish Balay /* invert diagonal block */ 54849b5e25fSSatish Balay w = ba + 49*diag_offset[i]; 54949b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_7(w);CHKERRQ(ierr); 55049b5e25fSSatish Balay } 55149b5e25fSSatish Balay 55249b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 55349b5e25fSSatish Balay ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr); 55449b5e25fSSatish Balay ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr); 55549b5e25fSSatish Balay C->factor = FACTOR_LU; 55649b5e25fSSatish Balay C->assembled = PETSC_TRUE; 55749b5e25fSSatish Balay PLogFlops(1.3333*343*b->mbs); /* from inverting diagonal blocks */ 55849b5e25fSSatish Balay PetscFunctionReturn(0); 55949b5e25fSSatish Balay } 56049b5e25fSSatish Balay 56149b5e25fSSatish Balay /* 56249b5e25fSSatish Balay Version for when blocks are 7 by 7 Using natural ordering 56349b5e25fSSatish Balay */ 56449b5e25fSSatish Balay #undef __FUNC__ 5656f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering" 5666f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering(Mat A,Mat *B) 56749b5e25fSSatish Balay { 56849b5e25fSSatish Balay Mat C = *B; 56949b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 57049b5e25fSSatish Balay int ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 57149b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 57249b5e25fSSatish Balay int *diag_offset = b->diag,*ai=a->i,*aj=a->j,*pj; 57349b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 57449b5e25fSSatish Balay MatScalar x1,x2,x3,x4,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15; 57549b5e25fSSatish Balay MatScalar x16,x17,x18,x19,x20,x21,x22,x23,x24,x25; 57649b5e25fSSatish Balay MatScalar p1,p2,p3,p4,p5,p6,p7,p8,p9,p10,p11,p12,p13,p14,p15; 57749b5e25fSSatish Balay MatScalar p16,p17,p18,p19,p20,p21,p22,p23,p24,p25; 57849b5e25fSSatish Balay MatScalar m1,m2,m3,m4,m5,m6,m7,m8,m9,m10,m11,m12,m13,m14,m15; 57949b5e25fSSatish Balay MatScalar m16,m17,m18,m19,m20,m21,m22,m23,m24,m25; 58049b5e25fSSatish Balay MatScalar p26,p27,p28,p29,p30,p31,p32,p33,p34,p35,p36; 58149b5e25fSSatish Balay MatScalar p37,p38,p39,p40,p41,p42,p43,p44,p45,p46,p47,p48,p49; 58249b5e25fSSatish Balay MatScalar x26,x27,x28,x29,x30,x31,x32,x33,x34,x35,x36; 58349b5e25fSSatish Balay MatScalar x37,x38,x39,x40,x41,x42,x43,x44,x45,x46,x47,x48,x49; 58449b5e25fSSatish Balay MatScalar m26,m27,m28,m29,m30,m31,m32,m33,m34,m35,m36; 58549b5e25fSSatish Balay MatScalar m37,m38,m39,m40,m41,m42,m43,m44,m45,m46,m47,m48,m49; 58649b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 58749b5e25fSSatish Balay 58849b5e25fSSatish Balay PetscFunctionBegin; 58949b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(49*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 59049b5e25fSSatish Balay for (i=0; i<n; i++) { 59149b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 59249b5e25fSSatish Balay ajtmp = bj + bi[i]; 59349b5e25fSSatish Balay for (j=0; j<nz; j++) { 59449b5e25fSSatish Balay x = rtmp+49*ajtmp[j]; 59549b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = x[4] = x[5] = x[6] = x[7] = x[8] = x[9] = 0.0; 59649b5e25fSSatish Balay x[10] = x[11] = x[12] = x[13] = x[14] = x[15] = x[16] = x[17] = 0.0; 59749b5e25fSSatish Balay x[18] = x[19] = x[20] = x[21] = x[22] = x[23] = x[24] = x[25] = 0.0 ; 59849b5e25fSSatish Balay x[26] = x[27] = x[28] = x[29] = x[30] = x[31] = x[32] = x[33] = 0.0 ; 59949b5e25fSSatish Balay x[34] = x[35] = x[36] = x[37] = x[38] = x[39] = x[40] = x[41] = 0.0 ; 60049b5e25fSSatish Balay x[42] = x[43] = x[44] = x[45] = x[46] = x[47] = x[48] = 0.0 ; 60149b5e25fSSatish Balay } 60249b5e25fSSatish Balay /* load in initial (unfactored row) */ 60349b5e25fSSatish Balay nz = ai[i+1] - ai[i]; 60449b5e25fSSatish Balay ajtmpold = aj + ai[i]; 60549b5e25fSSatish Balay v = aa + 49*ai[i]; 60649b5e25fSSatish Balay for (j=0; j<nz; j++) { 60749b5e25fSSatish Balay x = rtmp+49*ajtmpold[j]; 60849b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 60949b5e25fSSatish Balay x[4] = v[4]; x[5] = v[5]; x[6] = v[6]; x[7] = v[7]; 61049b5e25fSSatish Balay x[8] = v[8]; x[9] = v[9]; x[10] = v[10]; x[11] = v[11]; 61149b5e25fSSatish Balay x[12] = v[12]; x[13] = v[13]; x[14] = v[14]; x[15] = v[15]; 61249b5e25fSSatish Balay x[16] = v[16]; x[17] = v[17]; x[18] = v[18]; x[19] = v[19]; 61349b5e25fSSatish Balay x[20] = v[20]; x[21] = v[21]; x[22] = v[22]; x[23] = v[23]; 61449b5e25fSSatish Balay x[24] = v[24]; x[25] = v[25]; x[26] = v[26]; x[27] = v[27]; 61549b5e25fSSatish Balay x[28] = v[28]; x[29] = v[29]; x[30] = v[30]; x[31] = v[31]; 61649b5e25fSSatish Balay x[32] = v[32]; x[33] = v[33]; x[34] = v[34]; x[35] = v[35]; 61749b5e25fSSatish Balay x[36] = v[36]; x[37] = v[37]; x[38] = v[38]; x[39] = v[39]; 61849b5e25fSSatish Balay x[40] = v[40]; x[41] = v[41]; x[42] = v[42]; x[43] = v[43]; 61949b5e25fSSatish Balay x[44] = v[44]; x[45] = v[45]; x[46] = v[46]; x[47] = v[47]; 62049b5e25fSSatish Balay x[48] = v[48]; 62149b5e25fSSatish Balay v += 49; 62249b5e25fSSatish Balay } 62349b5e25fSSatish Balay row = *ajtmp++; 62449b5e25fSSatish Balay while (row < i) { 62549b5e25fSSatish Balay pc = rtmp + 49*row; 62649b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 62749b5e25fSSatish Balay p5 = pc[4]; p6 = pc[5]; p7 = pc[6]; p8 = pc[7]; 62849b5e25fSSatish Balay p9 = pc[8]; p10 = pc[9]; p11 = pc[10]; p12 = pc[11]; 62949b5e25fSSatish Balay p13 = pc[12]; p14 = pc[13]; p15 = pc[14]; p16 = pc[15]; 63049b5e25fSSatish Balay p17 = pc[16]; p18 = pc[17]; p19 = pc[18]; p20 = pc[19]; 63149b5e25fSSatish Balay p21 = pc[20]; p22 = pc[21]; p23 = pc[22]; p24 = pc[23]; 63249b5e25fSSatish Balay p25 = pc[24]; p26 = pc[25]; p27 = pc[26]; p28 = pc[27]; 63349b5e25fSSatish Balay p29 = pc[28]; p30 = pc[29]; p31 = pc[30]; p32 = pc[31]; 63449b5e25fSSatish Balay p33 = pc[32]; p34 = pc[33]; p35 = pc[34]; p36 = pc[35]; 63549b5e25fSSatish Balay p37 = pc[36]; p38 = pc[37]; p39 = pc[38]; p40 = pc[39]; 63649b5e25fSSatish Balay p41 = pc[40]; p42 = pc[41]; p43 = pc[42]; p44 = pc[43]; 63749b5e25fSSatish Balay p45 = pc[44]; p46 = pc[45]; p47 = pc[46]; p48 = pc[47]; 63849b5e25fSSatish Balay p49 = pc[48]; 63949b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0 || 64049b5e25fSSatish Balay p5 != 0.0 || p6 != 0.0 || p7 != 0.0 || p8 != 0.0 || 64149b5e25fSSatish Balay p9 != 0.0 || p10 != 0.0 || p11 != 0.0 || p12 != 0.0 || 64249b5e25fSSatish Balay p13 != 0.0 || p14 != 0.0 || p15 != 0.0 || p16 != 0.0 || 64349b5e25fSSatish Balay p17 != 0.0 || p18 != 0.0 || p19 != 0.0 || p20 != 0.0 || 64449b5e25fSSatish Balay p21 != 0.0 || p22 != 0.0 || p23 != 0.0 || p24 != 0.0 || 64549b5e25fSSatish Balay p25 != 0.0 || p26 != 0.0 || p27 != 0.0 || p28 != 0.0 || 64649b5e25fSSatish Balay p29 != 0.0 || p30 != 0.0 || p31 != 0.0 || p32 != 0.0 || 64749b5e25fSSatish Balay p33 != 0.0 || p34 != 0.0 || p35 != 0.0 || p36 != 0.0 || 64849b5e25fSSatish Balay p37 != 0.0 || p38 != 0.0 || p39 != 0.0 || p40 != 0.0 || 64949b5e25fSSatish Balay p41 != 0.0 || p42 != 0.0 || p43 != 0.0 || p44 != 0.0 || 65049b5e25fSSatish Balay p45 != 0.0 || p46 != 0.0 || p47 != 0.0 || p48 != 0.0 || 65149b5e25fSSatish Balay p49 != 0.0) { 65249b5e25fSSatish Balay pv = ba + 49*diag_offset[row]; 65349b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 65449b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 65549b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; 65649b5e25fSSatish Balay x9 = pv[8]; x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; 65749b5e25fSSatish Balay x13 = pv[12]; x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 65849b5e25fSSatish Balay x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; x20 = pv[19]; 65949b5e25fSSatish Balay x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 66049b5e25fSSatish Balay x25 = pv[24]; x26 = pv[25]; x27 = pv[26]; x28 = pv[27]; 66149b5e25fSSatish Balay x29 = pv[28]; x30 = pv[29]; x31 = pv[30]; x32 = pv[31]; 66249b5e25fSSatish Balay x33 = pv[32]; x34 = pv[33]; x35 = pv[34]; x36 = pv[35]; 66349b5e25fSSatish Balay x37 = pv[36]; x38 = pv[37]; x39 = pv[38]; x40 = pv[39]; 66449b5e25fSSatish Balay x41 = pv[40]; x42 = pv[41]; x43 = pv[42]; x44 = pv[43]; 66549b5e25fSSatish Balay x45 = pv[44]; x46 = pv[45]; x47 = pv[46]; x48 = pv[47]; 66649b5e25fSSatish Balay x49 = pv[48]; 66749b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p8*x2 + p15*x3 + p22*x4 + p29*x5 + p36*x6 + p43*x7; 66849b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p9*x2 + p16*x3 + p23*x4 + p30*x5 + p37*x6 + p44*x7; 66949b5e25fSSatish Balay pc[2] = m3 = p3*x1 + p10*x2 + p17*x3 + p24*x4 + p31*x5 + p38*x6 + p45*x7; 67049b5e25fSSatish Balay pc[3] = m4 = p4*x1 + p11*x2 + p18*x3 + p25*x4 + p32*x5 + p39*x6 + p46*x7; 67149b5e25fSSatish Balay pc[4] = m5 = p5*x1 + p12*x2 + p19*x3 + p26*x4 + p33*x5 + p40*x6 + p47*x7; 67249b5e25fSSatish Balay pc[5] = m6 = p6*x1 + p13*x2 + p20*x3 + p27*x4 + p34*x5 + p41*x6 + p48*x7; 67349b5e25fSSatish Balay pc[6] = m7 = p7*x1 + p14*x2 + p21*x3 + p28*x4 + p35*x5 + p42*x6 + p49*x7; 67449b5e25fSSatish Balay 67549b5e25fSSatish Balay pc[7] = m8 = p1*x8 + p8*x9 + p15*x10 + p22*x11 + p29*x12 + p36*x13 + p43*x14; 67649b5e25fSSatish Balay pc[8] = m9 = p2*x8 + p9*x9 + p16*x10 + p23*x11 + p30*x12 + p37*x13 + p44*x14; 67749b5e25fSSatish Balay pc[9] = m10 = p3*x8 + p10*x9 + p17*x10 + p24*x11 + p31*x12 + p38*x13 + p45*x14; 67849b5e25fSSatish Balay pc[10] = m11 = p4*x8 + p11*x9 + p18*x10 + p25*x11 + p32*x12 + p39*x13 + p46*x14; 67949b5e25fSSatish Balay pc[11] = m12 = p5*x8 + p12*x9 + p19*x10 + p26*x11 + p33*x12 + p40*x13 + p47*x14; 68049b5e25fSSatish Balay pc[12] = m13 = p6*x8 + p13*x9 + p20*x10 + p27*x11 + p34*x12 + p41*x13 + p48*x14; 68149b5e25fSSatish Balay pc[13] = m14 = p7*x8 + p14*x9 + p21*x10 + p28*x11 + p35*x12 + p42*x13 + p49*x14; 68249b5e25fSSatish Balay 68349b5e25fSSatish Balay pc[14] = m15 = p1*x15 + p8*x16 + p15*x17 + p22*x18 + p29*x19 + p36*x20 + p43*x21; 68449b5e25fSSatish Balay pc[15] = m16 = p2*x15 + p9*x16 + p16*x17 + p23*x18 + p30*x19 + p37*x20 + p44*x21; 68549b5e25fSSatish Balay pc[16] = m17 = p3*x15 + p10*x16 + p17*x17 + p24*x18 + p31*x19 + p38*x20 + p45*x21; 68649b5e25fSSatish Balay pc[17] = m18 = p4*x15 + p11*x16 + p18*x17 + p25*x18 + p32*x19 + p39*x20 + p46*x21; 68749b5e25fSSatish Balay pc[18] = m19 = p5*x15 + p12*x16 + p19*x17 + p26*x18 + p33*x19 + p40*x20 + p47*x21; 68849b5e25fSSatish Balay pc[19] = m20 = p6*x15 + p13*x16 + p20*x17 + p27*x18 + p34*x19 + p41*x20 + p48*x21; 68949b5e25fSSatish Balay pc[20] = m21 = p7*x15 + p14*x16 + p21*x17 + p28*x18 + p35*x19 + p42*x20 + p49*x21; 69049b5e25fSSatish Balay 69149b5e25fSSatish Balay pc[21] = m22 = p1*x22 + p8*x23 + p15*x24 + p22*x25 + p29*x26 + p36*x27 + p43*x28; 69249b5e25fSSatish Balay pc[22] = m23 = p2*x22 + p9*x23 + p16*x24 + p23*x25 + p30*x26 + p37*x27 + p44*x28; 69349b5e25fSSatish Balay pc[23] = m24 = p3*x22 + p10*x23 + p17*x24 + p24*x25 + p31*x26 + p38*x27 + p45*x28; 69449b5e25fSSatish Balay pc[24] = m25 = p4*x22 + p11*x23 + p18*x24 + p25*x25 + p32*x26 + p39*x27 + p46*x28; 69549b5e25fSSatish Balay pc[25] = m26 = p5*x22 + p12*x23 + p19*x24 + p26*x25 + p33*x26 + p40*x27 + p47*x28; 69649b5e25fSSatish Balay pc[26] = m27 = p6*x22 + p13*x23 + p20*x24 + p27*x25 + p34*x26 + p41*x27 + p48*x28; 69749b5e25fSSatish Balay pc[27] = m28 = p7*x22 + p14*x23 + p21*x24 + p28*x25 + p35*x26 + p42*x27 + p49*x28; 69849b5e25fSSatish Balay 69949b5e25fSSatish Balay pc[28] = m29 = p1*x29 + p8*x30 + p15*x31 + p22*x32 + p29*x33 + p36*x34 + p43*x35; 70049b5e25fSSatish Balay pc[29] = m30 = p2*x29 + p9*x30 + p16*x31 + p23*x32 + p30*x33 + p37*x34 + p44*x35; 70149b5e25fSSatish Balay pc[30] = m31 = p3*x29 + p10*x30 + p17*x31 + p24*x32 + p31*x33 + p38*x34 + p45*x35; 70249b5e25fSSatish Balay pc[31] = m32 = p4*x29 + p11*x30 + p18*x31 + p25*x32 + p32*x33 + p39*x34 + p46*x35; 70349b5e25fSSatish Balay pc[32] = m33 = p5*x29 + p12*x30 + p19*x31 + p26*x32 + p33*x33 + p40*x34 + p47*x35; 70449b5e25fSSatish Balay pc[33] = m34 = p6*x29 + p13*x30 + p20*x31 + p27*x32 + p34*x33 + p41*x34 + p48*x35; 70549b5e25fSSatish Balay pc[34] = m35 = p7*x29 + p14*x30 + p21*x31 + p28*x32 + p35*x33 + p42*x34 + p49*x35; 70649b5e25fSSatish Balay 70749b5e25fSSatish Balay pc[35] = m36 = p1*x36 + p8*x37 + p15*x38 + p22*x39 + p29*x40 + p36*x41 + p43*x42; 70849b5e25fSSatish Balay pc[36] = m37 = p2*x36 + p9*x37 + p16*x38 + p23*x39 + p30*x40 + p37*x41 + p44*x42; 70949b5e25fSSatish Balay pc[37] = m38 = p3*x36 + p10*x37 + p17*x38 + p24*x39 + p31*x40 + p38*x41 + p45*x42; 71049b5e25fSSatish Balay pc[38] = m39 = p4*x36 + p11*x37 + p18*x38 + p25*x39 + p32*x40 + p39*x41 + p46*x42; 71149b5e25fSSatish Balay pc[39] = m40 = p5*x36 + p12*x37 + p19*x38 + p26*x39 + p33*x40 + p40*x41 + p47*x42; 71249b5e25fSSatish Balay pc[40] = m41 = p6*x36 + p13*x37 + p20*x38 + p27*x39 + p34*x40 + p41*x41 + p48*x42; 71349b5e25fSSatish Balay pc[41] = m42 = p7*x36 + p14*x37 + p21*x38 + p28*x39 + p35*x40 + p42*x41 + p49*x42; 71449b5e25fSSatish Balay 71549b5e25fSSatish Balay pc[42] = m43 = p1*x43 + p8*x44 + p15*x45 + p22*x46 + p29*x47 + p36*x48 + p43*x49; 71649b5e25fSSatish Balay pc[43] = m44 = p2*x43 + p9*x44 + p16*x45 + p23*x46 + p30*x47 + p37*x48 + p44*x49; 71749b5e25fSSatish Balay pc[44] = m45 = p3*x43 + p10*x44 + p17*x45 + p24*x46 + p31*x47 + p38*x48 + p45*x49; 71849b5e25fSSatish Balay pc[45] = m46 = p4*x43 + p11*x44 + p18*x45 + p25*x46 + p32*x47 + p39*x48 + p46*x49; 71949b5e25fSSatish Balay pc[46] = m47 = p5*x43 + p12*x44 + p19*x45 + p26*x46 + p33*x47 + p40*x48 + p47*x49; 72049b5e25fSSatish Balay pc[47] = m48 = p6*x43 + p13*x44 + p20*x45 + p27*x46 + p34*x47 + p41*x48 + p48*x49; 72149b5e25fSSatish Balay pc[48] = m49 = p7*x43 + p14*x44 + p21*x45 + p28*x46 + p35*x47 + p42*x48 + p49*x49; 72249b5e25fSSatish Balay 72349b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 72449b5e25fSSatish Balay pv += 49; 72549b5e25fSSatish Balay for (j=0; j<nz; j++) { 72649b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 72749b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; 72849b5e25fSSatish Balay x9 = pv[8]; x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; 72949b5e25fSSatish Balay x13 = pv[12]; x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 73049b5e25fSSatish Balay x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; x20 = pv[19]; 73149b5e25fSSatish Balay x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 73249b5e25fSSatish Balay x25 = pv[24]; x26 = pv[25]; x27 = pv[26]; x28 = pv[27]; 73349b5e25fSSatish Balay x29 = pv[28]; x30 = pv[29]; x31 = pv[30]; x32 = pv[31]; 73449b5e25fSSatish Balay x33 = pv[32]; x34 = pv[33]; x35 = pv[34]; x36 = pv[35]; 73549b5e25fSSatish Balay x37 = pv[36]; x38 = pv[37]; x39 = pv[38]; x40 = pv[39]; 73649b5e25fSSatish Balay x41 = pv[40]; x42 = pv[41]; x43 = pv[42]; x44 = pv[43]; 73749b5e25fSSatish Balay x45 = pv[44]; x46 = pv[45]; x47 = pv[46]; x48 = pv[47]; 73849b5e25fSSatish Balay x49 = pv[48]; 73949b5e25fSSatish Balay x = rtmp + 49*pj[j]; 74049b5e25fSSatish Balay x[0] -= m1*x1 + m8*x2 + m15*x3 + m22*x4 + m29*x5 + m36*x6 + m43*x7; 74149b5e25fSSatish Balay x[1] -= m2*x1 + m9*x2 + m16*x3 + m23*x4 + m30*x5 + m37*x6 + m44*x7; 74249b5e25fSSatish Balay x[2] -= m3*x1 + m10*x2 + m17*x3 + m24*x4 + m31*x5 + m38*x6 + m45*x7; 74349b5e25fSSatish Balay x[3] -= m4*x1 + m11*x2 + m18*x3 + m25*x4 + m32*x5 + m39*x6 + m46*x7; 74449b5e25fSSatish Balay x[4] -= m5*x1 + m12*x2 + m19*x3 + m26*x4 + m33*x5 + m40*x6 + m47*x7; 74549b5e25fSSatish Balay x[5] -= m6*x1 + m13*x2 + m20*x3 + m27*x4 + m34*x5 + m41*x6 + m48*x7; 74649b5e25fSSatish Balay x[6] -= m7*x1 + m14*x2 + m21*x3 + m28*x4 + m35*x5 + m42*x6 + m49*x7; 74749b5e25fSSatish Balay 74849b5e25fSSatish Balay x[7] -= m1*x8 + m8*x9 + m15*x10 + m22*x11 + m29*x12 + m36*x13 + m43*x14; 74949b5e25fSSatish Balay x[8] -= m2*x8 + m9*x9 + m16*x10 + m23*x11 + m30*x12 + m37*x13 + m44*x14; 75049b5e25fSSatish Balay x[9] -= m3*x8 + m10*x9 + m17*x10 + m24*x11 + m31*x12 + m38*x13 + m45*x14; 75149b5e25fSSatish Balay x[10] -= m4*x8 + m11*x9 + m18*x10 + m25*x11 + m32*x12 + m39*x13 + m46*x14; 75249b5e25fSSatish Balay x[11] -= m5*x8 + m12*x9 + m19*x10 + m26*x11 + m33*x12 + m40*x13 + m47*x14; 75349b5e25fSSatish Balay x[12] -= m6*x8 + m13*x9 + m20*x10 + m27*x11 + m34*x12 + m41*x13 + m48*x14; 75449b5e25fSSatish Balay x[13] -= m7*x8 + m14*x9 + m21*x10 + m28*x11 + m35*x12 + m42*x13 + m49*x14; 75549b5e25fSSatish Balay 75649b5e25fSSatish Balay x[14] -= m1*x15 + m8*x16 + m15*x17 + m22*x18 + m29*x19 + m36*x20 + m43*x21; 75749b5e25fSSatish Balay x[15] -= m2*x15 + m9*x16 + m16*x17 + m23*x18 + m30*x19 + m37*x20 + m44*x21; 75849b5e25fSSatish Balay x[16] -= m3*x15 + m10*x16 + m17*x17 + m24*x18 + m31*x19 + m38*x20 + m45*x21; 75949b5e25fSSatish Balay x[17] -= m4*x15 + m11*x16 + m18*x17 + m25*x18 + m32*x19 + m39*x20 + m46*x21; 76049b5e25fSSatish Balay x[18] -= m5*x15 + m12*x16 + m19*x17 + m26*x18 + m33*x19 + m40*x20 + m47*x21; 76149b5e25fSSatish Balay x[19] -= m6*x15 + m13*x16 + m20*x17 + m27*x18 + m34*x19 + m41*x20 + m48*x21; 76249b5e25fSSatish Balay x[20] -= m7*x15 + m14*x16 + m21*x17 + m28*x18 + m35*x19 + m42*x20 + m49*x21; 76349b5e25fSSatish Balay 76449b5e25fSSatish Balay x[21] -= m1*x22 + m8*x23 + m15*x24 + m22*x25 + m29*x26 + m36*x27 + m43*x28; 76549b5e25fSSatish Balay x[22] -= m2*x22 + m9*x23 + m16*x24 + m23*x25 + m30*x26 + m37*x27 + m44*x28; 76649b5e25fSSatish Balay x[23] -= m3*x22 + m10*x23 + m17*x24 + m24*x25 + m31*x26 + m38*x27 + m45*x28; 76749b5e25fSSatish Balay x[24] -= m4*x22 + m11*x23 + m18*x24 + m25*x25 + m32*x26 + m39*x27 + m46*x28; 76849b5e25fSSatish Balay x[25] -= m5*x22 + m12*x23 + m19*x24 + m26*x25 + m33*x26 + m40*x27 + m47*x28; 76949b5e25fSSatish Balay x[26] -= m6*x22 + m13*x23 + m20*x24 + m27*x25 + m34*x26 + m41*x27 + m48*x28; 77049b5e25fSSatish Balay x[27] -= m7*x22 + m14*x23 + m21*x24 + m28*x25 + m35*x26 + m42*x27 + m49*x28; 77149b5e25fSSatish Balay 77249b5e25fSSatish Balay x[28] -= m1*x29 + m8*x30 + m15*x31 + m22*x32 + m29*x33 + m36*x34 + m43*x35; 77349b5e25fSSatish Balay x[29] -= m2*x29 + m9*x30 + m16*x31 + m23*x32 + m30*x33 + m37*x34 + m44*x35; 77449b5e25fSSatish Balay x[30] -= m3*x29 + m10*x30 + m17*x31 + m24*x32 + m31*x33 + m38*x34 + m45*x35; 77549b5e25fSSatish Balay x[31] -= m4*x29 + m11*x30 + m18*x31 + m25*x32 + m32*x33 + m39*x34 + m46*x35; 77649b5e25fSSatish Balay x[32] -= m5*x29 + m12*x30 + m19*x31 + m26*x32 + m33*x33 + m40*x34 + m47*x35; 77749b5e25fSSatish Balay x[33] -= m6*x29 + m13*x30 + m20*x31 + m27*x32 + m34*x33 + m41*x34 + m48*x35; 77849b5e25fSSatish Balay x[34] -= m7*x29 + m14*x30 + m21*x31 + m28*x32 + m35*x33 + m42*x34 + m49*x35; 77949b5e25fSSatish Balay 78049b5e25fSSatish Balay x[35] -= m1*x36 + m8*x37 + m15*x38 + m22*x39 + m29*x40 + m36*x41 + m43*x42; 78149b5e25fSSatish Balay x[36] -= m2*x36 + m9*x37 + m16*x38 + m23*x39 + m30*x40 + m37*x41 + m44*x42; 78249b5e25fSSatish Balay x[37] -= m3*x36 + m10*x37 + m17*x38 + m24*x39 + m31*x40 + m38*x41 + m45*x42; 78349b5e25fSSatish Balay x[38] -= m4*x36 + m11*x37 + m18*x38 + m25*x39 + m32*x40 + m39*x41 + m46*x42; 78449b5e25fSSatish Balay x[39] -= m5*x36 + m12*x37 + m19*x38 + m26*x39 + m33*x40 + m40*x41 + m47*x42; 78549b5e25fSSatish Balay x[40] -= m6*x36 + m13*x37 + m20*x38 + m27*x39 + m34*x40 + m41*x41 + m48*x42; 78649b5e25fSSatish Balay x[41] -= m7*x36 + m14*x37 + m21*x38 + m28*x39 + m35*x40 + m42*x41 + m49*x42; 78749b5e25fSSatish Balay 78849b5e25fSSatish Balay x[42] -= m1*x43 + m8*x44 + m15*x45 + m22*x46 + m29*x47 + m36*x48 + m43*x49; 78949b5e25fSSatish Balay x[43] -= m2*x43 + m9*x44 + m16*x45 + m23*x46 + m30*x47 + m37*x48 + m44*x49; 79049b5e25fSSatish Balay x[44] -= m3*x43 + m10*x44 + m17*x45 + m24*x46 + m31*x47 + m38*x48 + m45*x49; 79149b5e25fSSatish Balay x[45] -= m4*x43 + m11*x44 + m18*x45 + m25*x46 + m32*x47 + m39*x48 + m46*x49; 79249b5e25fSSatish Balay x[46] -= m5*x43 + m12*x44 + m19*x45 + m26*x46 + m33*x47 + m40*x48 + m47*x49; 79349b5e25fSSatish Balay x[47] -= m6*x43 + m13*x44 + m20*x45 + m27*x46 + m34*x47 + m41*x48 + m48*x49; 79449b5e25fSSatish Balay x[48] -= m7*x43 + m14*x44 + m21*x45 + m28*x46 + m35*x47 + m42*x48 + m49*x49; 79549b5e25fSSatish Balay pv += 49; 79649b5e25fSSatish Balay } 79749b5e25fSSatish Balay PLogFlops(686*nz+637); 79849b5e25fSSatish Balay } 79949b5e25fSSatish Balay row = *ajtmp++; 80049b5e25fSSatish Balay } 80149b5e25fSSatish Balay /* finished row so stick it into b->a */ 80249b5e25fSSatish Balay pv = ba + 49*bi[i]; 80349b5e25fSSatish Balay pj = bj + bi[i]; 80449b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 80549b5e25fSSatish Balay for (j=0; j<nz; j++) { 80649b5e25fSSatish Balay x = rtmp+49*pj[j]; 80749b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 80849b5e25fSSatish Balay pv[4] = x[4]; pv[5] = x[5]; pv[6] = x[6]; pv[7] = x[7]; 80949b5e25fSSatish Balay pv[8] = x[8]; pv[9] = x[9]; pv[10] = x[10]; pv[11] = x[11]; 81049b5e25fSSatish Balay pv[12] = x[12]; pv[13] = x[13]; pv[14] = x[14]; pv[15] = x[15]; 81149b5e25fSSatish Balay pv[16] = x[16]; pv[17] = x[17]; pv[18] = x[18]; pv[19] = x[19]; 81249b5e25fSSatish Balay pv[20] = x[20]; pv[21] = x[21]; pv[22] = x[22]; pv[23] = x[23]; 81349b5e25fSSatish Balay pv[24] = x[24]; pv[25] = x[25]; pv[26] = x[26]; pv[27] = x[27]; 81449b5e25fSSatish Balay pv[28] = x[28]; pv[29] = x[29]; pv[30] = x[30]; pv[31] = x[31]; 81549b5e25fSSatish Balay pv[32] = x[32]; pv[33] = x[33]; pv[34] = x[34]; pv[35] = x[35]; 81649b5e25fSSatish Balay pv[36] = x[36]; pv[37] = x[37]; pv[38] = x[38]; pv[39] = x[39]; 81749b5e25fSSatish Balay pv[40] = x[40]; pv[41] = x[41]; pv[42] = x[42]; pv[43] = x[43]; 81849b5e25fSSatish Balay pv[44] = x[44]; pv[45] = x[45]; pv[46] = x[46]; pv[47] = x[47]; 81949b5e25fSSatish Balay pv[48] = x[48]; 82049b5e25fSSatish Balay pv += 49; 82149b5e25fSSatish Balay } 82249b5e25fSSatish Balay /* invert diagonal block */ 82349b5e25fSSatish Balay w = ba + 49*diag_offset[i]; 82449b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_7(w);CHKERRQ(ierr); 82549b5e25fSSatish Balay } 82649b5e25fSSatish Balay 82749b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 82849b5e25fSSatish Balay C->factor = FACTOR_LU; 82949b5e25fSSatish Balay C->assembled = PETSC_TRUE; 83049b5e25fSSatish Balay PLogFlops(1.3333*343*b->mbs); /* from inverting diagonal blocks */ 83149b5e25fSSatish Balay PetscFunctionReturn(0); 83249b5e25fSSatish Balay } 83349b5e25fSSatish Balay 834*9b0e81eeSHong Zhang /* Version for when blocks are 6 by 6 */ 83549b5e25fSSatish Balay #undef __FUNC__ 8366f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_6" 8376f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_6(Mat A,Mat *B) 83849b5e25fSSatish Balay { 83949b5e25fSSatish Balay Mat C = *B; 840*9b0e81eeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 841*9b0e81eeSHong Zhang IS perm = b->row; 842*9b0e81eeSHong Zhang int *perm_ptr,ierr,i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 843*9b0e81eeSHong Zhang int *ai,*aj,*a2anew,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili; 844*9b0e81eeSHong Zhang MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 845*9b0e81eeSHong Zhang MatScalar *u,*d,*w,*wp; 84649b5e25fSSatish Balay 84749b5e25fSSatish Balay PetscFunctionBegin; 848*9b0e81eeSHong Zhang /* initialization */ 849*9b0e81eeSHong Zhang w = (MatScalar*)PetscMalloc(36*mbs*sizeof(MatScalar));CHKPTRQ(w); 850*9b0e81eeSHong Zhang ierr = PetscMemzero(w,36*mbs*sizeof(MatScalar));CHKERRQ(ierr); 851*9b0e81eeSHong Zhang il = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(il); 852*9b0e81eeSHong Zhang jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 853*9b0e81eeSHong Zhang for (i=0; i<mbs; i++) { 854*9b0e81eeSHong Zhang jl[i] = mbs; il[0] = 0; 85549b5e25fSSatish Balay } 856*9b0e81eeSHong Zhang dk = (MatScalar*)PetscMalloc(36*sizeof(MatScalar));CHKPTRQ(dk); 857*9b0e81eeSHong Zhang uik = (MatScalar*)PetscMalloc(36*sizeof(MatScalar));CHKPTRQ(uik); 858*9b0e81eeSHong Zhang ierr = ISGetIndices(perm,&perm_ptr);CHKERRQ(ierr); 859*9b0e81eeSHong Zhang 860*9b0e81eeSHong Zhang /* check permutation */ 861*9b0e81eeSHong Zhang if (!a->permute){ 862*9b0e81eeSHong Zhang ai = a->i; aj = a->j; aa = a->a; 863*9b0e81eeSHong Zhang } else { 864*9b0e81eeSHong Zhang ai = a->inew; aj = a->jnew; 865*9b0e81eeSHong Zhang aa = (MatScalar*)PetscMalloc(36*ai[mbs]*sizeof(MatScalar));CHKPTRQ(aa); 866*9b0e81eeSHong Zhang ierr = PetscMemcpy(aa,a->a,36*ai[mbs]*sizeof(MatScalar));CHKERRQ(ierr); 867*9b0e81eeSHong Zhang a2anew = (int*)PetscMalloc(ai[mbs]*sizeof(int));CHKPTRQ(a2anew); 868*9b0e81eeSHong Zhang ierr= PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(int));CHKERRQ(ierr); 869*9b0e81eeSHong Zhang 870*9b0e81eeSHong Zhang for (i=0; i<mbs; i++){ 871*9b0e81eeSHong Zhang jmin = ai[i]; jmax = ai[i+1]; 872*9b0e81eeSHong Zhang for (j=jmin; j<jmax; j++){ 873*9b0e81eeSHong Zhang while (a2anew[j] != j){ 874*9b0e81eeSHong Zhang k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k; 875*9b0e81eeSHong Zhang for (k1=0; k1<36; k1++){ 876*9b0e81eeSHong Zhang dk[k1] = aa[k*36+k1]; 877*9b0e81eeSHong Zhang aa[k*36+k1] = aa[j*36+k1]; 878*9b0e81eeSHong Zhang aa[j*36+k1] = dk[k1]; 87949b5e25fSSatish Balay } 88049b5e25fSSatish Balay } 881*9b0e81eeSHong Zhang /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */ 882*9b0e81eeSHong Zhang if (i > aj[j]){ 883*9b0e81eeSHong Zhang /* printf("change orientation, row: %d, col: %d\n",i,aj[j]); */ 884*9b0e81eeSHong Zhang ap = aa + j*36; /* ptr to the beginning of j-th block of aa */ 885*9b0e81eeSHong Zhang for (k=0; k<36; k++) dk[k] = ap[k]; /* dk <- j-th block of aa */ 886*9b0e81eeSHong Zhang for (k=0; k<6; k++){ /* j-th block of aa <- dk^T */ 887*9b0e81eeSHong Zhang for (k1=0; k1<6; k1++) *ap++ = dk[k + 6*k1]; 88849b5e25fSSatish Balay } 88949b5e25fSSatish Balay } 89049b5e25fSSatish Balay } 891*9b0e81eeSHong Zhang } 892*9b0e81eeSHong Zhang ierr = PetscFree(a2anew);CHKERRA(ierr); 893*9b0e81eeSHong Zhang } 894*9b0e81eeSHong Zhang 895*9b0e81eeSHong Zhang /* for each row k */ 896*9b0e81eeSHong Zhang for (k = 0; k<mbs; k++){ 897*9b0e81eeSHong Zhang 898*9b0e81eeSHong Zhang /*initialize k-th row with elements nonzero in row perm(k) of A */ 899*9b0e81eeSHong Zhang jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1]; 900*9b0e81eeSHong Zhang if (jmin < jmax) { 901*9b0e81eeSHong Zhang ap = aa + jmin*36; 902*9b0e81eeSHong Zhang for (j = jmin; j < jmax; j++){ 903*9b0e81eeSHong Zhang vj = perm_ptr[aj[j]]; /* block col. index */ 904*9b0e81eeSHong Zhang wp = w + vj*36; 905*9b0e81eeSHong Zhang for (i=0; i<36; i++) *wp++ = *ap++; 906*9b0e81eeSHong Zhang } 907*9b0e81eeSHong Zhang } 908*9b0e81eeSHong Zhang 909*9b0e81eeSHong Zhang /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 910*9b0e81eeSHong Zhang ierr = PetscMemcpy(dk,w+k*36,36*sizeof(MatScalar));CHKERRQ(ierr); 911*9b0e81eeSHong Zhang i = jl[k]; /* first row to be added to k_th row */ 912*9b0e81eeSHong Zhang 913*9b0e81eeSHong Zhang while (i < mbs){ 914*9b0e81eeSHong Zhang nexti = jl[i]; /* next row to be added to k_th row */ 915*9b0e81eeSHong Zhang 916*9b0e81eeSHong Zhang /* compute multiplier */ 917*9b0e81eeSHong Zhang ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 918*9b0e81eeSHong Zhang 919*9b0e81eeSHong Zhang /* uik = -inv(Di)*U_bar(i,k) */ 920*9b0e81eeSHong Zhang d = ba + i*36; 921*9b0e81eeSHong Zhang u = ba + ili*36; 922*9b0e81eeSHong Zhang 923*9b0e81eeSHong Zhang uik[0] = -(d[0]*u[0] + d[6]*u[1] + d[12]*u[2] + d[18]*u[3] + d[24]*u[4] + d[30]*u[5]); 924*9b0e81eeSHong Zhang uik[1] = -(d[1]*u[0] + d[7]*u[1] + d[13]*u[2] + d[19]*u[3] + d[25]*u[4] + d[31]*u[5]); 925*9b0e81eeSHong Zhang uik[2] = -(d[2]*u[0] + d[8]*u[1] + d[14]*u[2] + d[20]*u[3] + d[26]*u[4] + d[32]*u[5]); 926*9b0e81eeSHong Zhang uik[3] = -(d[3]*u[0] + d[9]*u[1] + d[15]*u[2] + d[21]*u[3] + d[27]*u[4] + d[33]*u[5]); 927*9b0e81eeSHong Zhang uik[4] = -(d[4]*u[0]+ d[10]*u[1] + d[16]*u[2] + d[22]*u[3] + d[28]*u[4] + d[34]*u[5]); 928*9b0e81eeSHong Zhang uik[5] = -(d[5]*u[0]+ d[11]*u[1] + d[17]*u[2] + d[23]*u[3] + d[29]*u[4] + d[35]*u[5]); 929*9b0e81eeSHong Zhang 930*9b0e81eeSHong Zhang uik[6] = -(d[0]*u[6] + d[6]*u[7] + d[12]*u[8] + d[18]*u[9] + d[24]*u[10] + d[30]*u[11]); 931*9b0e81eeSHong Zhang uik[7] = -(d[1]*u[6] + d[7]*u[7] + d[13]*u[8] + d[19]*u[9] + d[25]*u[10] + d[31]*u[11]); 932*9b0e81eeSHong Zhang uik[8] = -(d[2]*u[6] + d[8]*u[7] + d[14]*u[8] + d[20]*u[9] + d[26]*u[10] + d[32]*u[11]); 933*9b0e81eeSHong Zhang uik[9] = -(d[3]*u[6] + d[9]*u[7] + d[15]*u[8] + d[21]*u[9] + d[27]*u[10] + d[33]*u[11]); 934*9b0e81eeSHong Zhang uik[10]= -(d[4]*u[6]+ d[10]*u[7] + d[16]*u[8] + d[22]*u[9] + d[28]*u[10] + d[34]*u[11]); 935*9b0e81eeSHong Zhang uik[11]= -(d[5]*u[6]+ d[11]*u[7] + d[17]*u[8] + d[23]*u[9] + d[29]*u[10] + d[35]*u[11]); 936*9b0e81eeSHong Zhang 937*9b0e81eeSHong Zhang uik[12] = -(d[0]*u[12] + d[6]*u[13] + d[12]*u[14] + d[18]*u[15] + d[24]*u[16] + d[30]*u[17]); 938*9b0e81eeSHong Zhang uik[13] = -(d[1]*u[12] + d[7]*u[13] + d[13]*u[14] + d[19]*u[15] + d[25]*u[16] + d[31]*u[17]); 939*9b0e81eeSHong Zhang uik[14] = -(d[2]*u[12] + d[8]*u[13] + d[14]*u[14] + d[20]*u[15] + d[26]*u[16] + d[32]*u[17]); 940*9b0e81eeSHong Zhang uik[15] = -(d[3]*u[12] + d[9]*u[13] + d[15]*u[14] + d[21]*u[15] + d[27]*u[16] + d[33]*u[17]); 941*9b0e81eeSHong Zhang uik[16] = -(d[4]*u[12]+ d[10]*u[13] + d[16]*u[14] + d[22]*u[15] + d[28]*u[16] + d[34]*u[17]); 942*9b0e81eeSHong Zhang uik[17] = -(d[5]*u[12]+ d[11]*u[13] + d[17]*u[14] + d[23]*u[15] + d[29]*u[16] + d[35]*u[17]); 943*9b0e81eeSHong Zhang 944*9b0e81eeSHong Zhang uik[18] = -(d[0]*u[18] + d[6]*u[19] + d[12]*u[20] + d[18]*u[21] + d[24]*u[22] + d[30]*u[23]); 945*9b0e81eeSHong Zhang uik[19] = -(d[1]*u[18] + d[7]*u[19] + d[13]*u[20] + d[19]*u[21] + d[25]*u[22] + d[31]*u[23]); 946*9b0e81eeSHong Zhang uik[20] = -(d[2]*u[18] + d[8]*u[19] + d[14]*u[20] + d[20]*u[21] + d[26]*u[22] + d[32]*u[23]); 947*9b0e81eeSHong Zhang uik[21] = -(d[3]*u[18] + d[9]*u[19] + d[15]*u[20] + d[21]*u[21] + d[27]*u[22] + d[33]*u[23]); 948*9b0e81eeSHong Zhang uik[22] = -(d[4]*u[18]+ d[10]*u[19] + d[16]*u[20] + d[22]*u[21] + d[28]*u[22] + d[34]*u[23]); 949*9b0e81eeSHong Zhang uik[23] = -(d[5]*u[18]+ d[11]*u[19] + d[17]*u[20] + d[23]*u[21] + d[29]*u[22] + d[35]*u[23]); 950*9b0e81eeSHong Zhang 951*9b0e81eeSHong Zhang uik[24] = -(d[0]*u[24] + d[6]*u[25] + d[12]*u[26] + d[18]*u[27] + d[24]*u[28] + d[30]*u[29]); 952*9b0e81eeSHong Zhang uik[25] = -(d[1]*u[24] + d[7]*u[25] + d[13]*u[26] + d[19]*u[27] + d[25]*u[28] + d[31]*u[29]); 953*9b0e81eeSHong Zhang uik[26] = -(d[2]*u[24] + d[8]*u[25] + d[14]*u[26] + d[20]*u[27] + d[26]*u[28] + d[32]*u[29]); 954*9b0e81eeSHong Zhang uik[27] = -(d[3]*u[24] + d[9]*u[25] + d[15]*u[26] + d[21]*u[27] + d[27]*u[28] + d[33]*u[29]); 955*9b0e81eeSHong Zhang uik[28] = -(d[4]*u[24]+ d[10]*u[25] + d[16]*u[26] + d[22]*u[27] + d[28]*u[28] + d[34]*u[29]); 956*9b0e81eeSHong Zhang uik[29] = -(d[5]*u[24]+ d[11]*u[25] + d[17]*u[26] + d[23]*u[27] + d[29]*u[28] + d[35]*u[29]); 957*9b0e81eeSHong Zhang 958*9b0e81eeSHong Zhang uik[30] = -(d[0]*u[30] + d[6]*u[31] + d[12]*u[32] + d[18]*u[33] + d[24]*u[34] + d[30]*u[35]); 959*9b0e81eeSHong Zhang uik[31] = -(d[1]*u[30] + d[7]*u[31] + d[13]*u[32] + d[19]*u[33] + d[25]*u[34] + d[31]*u[35]); 960*9b0e81eeSHong Zhang uik[32] = -(d[2]*u[30] + d[8]*u[31] + d[14]*u[32] + d[20]*u[33] + d[26]*u[34] + d[32]*u[35]); 961*9b0e81eeSHong Zhang uik[33] = -(d[3]*u[30] + d[9]*u[31] + d[15]*u[32] + d[21]*u[33] + d[27]*u[34] + d[33]*u[35]); 962*9b0e81eeSHong Zhang uik[34] = -(d[4]*u[30]+ d[10]*u[31] + d[16]*u[32] + d[22]*u[33] + d[28]*u[34] + d[34]*u[35]); 963*9b0e81eeSHong Zhang uik[35] = -(d[5]*u[30]+ d[11]*u[31] + d[17]*u[32] + d[23]*u[33] + d[29]*u[34] + d[35]*u[35]); 964*9b0e81eeSHong Zhang 965*9b0e81eeSHong Zhang /* update D(k) += -U(i,k)^T * U_bar(i,k) */ 966*9b0e81eeSHong Zhang dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5]; 967*9b0e81eeSHong Zhang dk[1] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2] + uik[9]*u[3]+ uik[10]*u[4]+ uik[11]*u[5]; 968*9b0e81eeSHong Zhang dk[2] += uik[12]*u[0]+ uik[13]*u[1]+ uik[14]*u[2]+ uik[15]*u[3]+ uik[16]*u[4]+ uik[17]*u[5]; 969*9b0e81eeSHong Zhang dk[3] += uik[18]*u[0]+ uik[19]*u[1]+ uik[20]*u[2]+ uik[21]*u[3]+ uik[22]*u[4]+ uik[23]*u[5]; 970*9b0e81eeSHong Zhang dk[4] += uik[24]*u[0]+ uik[25]*u[1]+ uik[26]*u[2]+ uik[27]*u[3]+ uik[28]*u[4]+ uik[29]*u[5]; 971*9b0e81eeSHong Zhang dk[5] += uik[30]*u[0]+ uik[31]*u[1]+ uik[32]*u[2]+ uik[33]*u[3]+ uik[34]*u[4]+ uik[35]*u[5]; 972*9b0e81eeSHong Zhang 973*9b0e81eeSHong Zhang dk[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8] + uik[3]*u[9] + uik[4]*u[10] + uik[5]*u[11]; 974*9b0e81eeSHong Zhang dk[7] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]+ uik[10]*u[10]+ uik[11]*u[11]; 975*9b0e81eeSHong Zhang dk[8] += uik[12]*u[6]+ uik[13]*u[7]+ uik[14]*u[8]+ uik[15]*u[9]+ uik[16]*u[10]+ uik[17]*u[11]; 976*9b0e81eeSHong Zhang dk[9] += uik[18]*u[6]+ uik[19]*u[7]+ uik[20]*u[8]+ uik[21]*u[9]+ uik[22]*u[10]+ uik[23]*u[11]; 977*9b0e81eeSHong Zhang dk[10]+= uik[24]*u[6]+ uik[25]*u[7]+ uik[26]*u[8]+ uik[27]*u[9]+ uik[28]*u[10]+ uik[29]*u[11]; 978*9b0e81eeSHong Zhang dk[11]+= uik[30]*u[6]+ uik[31]*u[7]+ uik[32]*u[8]+ uik[33]*u[9]+ uik[34]*u[10]+ uik[35]*u[11]; 979*9b0e81eeSHong Zhang 980*9b0e81eeSHong Zhang dk[12]+= uik[0]*u[12] + uik[1]*u[13] + uik[2]*u[14] + uik[3]*u[15] + uik[4]*u[16] + uik[5]*u[17]; 981*9b0e81eeSHong Zhang dk[13]+= uik[6]*u[12] + uik[7]*u[13] + uik[8]*u[14] + uik[9]*u[15]+ uik[10]*u[16]+ uik[11]*u[17]; 982*9b0e81eeSHong Zhang dk[14]+= uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]+ uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]; 983*9b0e81eeSHong Zhang dk[15]+= uik[18]*u[12]+ uik[19]*u[13]+ uik[20]*u[14]+ uik[21]*u[15]+ uik[22]*u[16]+ uik[23]*u[17]; 984*9b0e81eeSHong Zhang dk[16]+= uik[24]*u[12]+ uik[25]*u[13]+ uik[26]*u[14]+ uik[27]*u[15]+ uik[28]*u[16]+ uik[29]*u[17]; 985*9b0e81eeSHong Zhang dk[17]+= uik[30]*u[12]+ uik[31]*u[13]+ uik[32]*u[14]+ uik[33]*u[15]+ uik[34]*u[16]+ uik[35]*u[17]; 986*9b0e81eeSHong Zhang 987*9b0e81eeSHong Zhang dk[18]+= uik[0]*u[18] + uik[1]*u[19] + uik[2]*u[20] + uik[3]*u[21] + uik[4]*u[22] + uik[5]*u[23]; 988*9b0e81eeSHong Zhang dk[19]+= uik[6]*u[18] + uik[7]*u[19] + uik[8]*u[20] + uik[9]*u[21]+ uik[10]*u[22]+ uik[11]*u[23]; 989*9b0e81eeSHong Zhang dk[20]+= uik[12]*u[18]+ uik[13]*u[19]+ uik[14]*u[20]+ uik[15]*u[21]+ uik[16]*u[22]+ uik[17]*u[23]; 990*9b0e81eeSHong Zhang dk[21]+= uik[18]*u[18]+ uik[19]*u[19]+ uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]; 991*9b0e81eeSHong Zhang dk[22]+= uik[24]*u[18]+ uik[25]*u[19]+ uik[26]*u[20]+ uik[27]*u[21]+ uik[28]*u[22]+ uik[29]*u[23]; 992*9b0e81eeSHong Zhang dk[23]+= uik[30]*u[18]+ uik[31]*u[19]+ uik[32]*u[20]+ uik[33]*u[21]+ uik[34]*u[22]+ uik[35]*u[23]; 993*9b0e81eeSHong Zhang 994*9b0e81eeSHong Zhang dk[24]+= uik[0]*u[24] + uik[1]*u[25] + uik[2]*u[26] + uik[3]*u[27] + uik[4]*u[28] + uik[5]*u[29]; 995*9b0e81eeSHong Zhang dk[25]+= uik[6]*u[24] + uik[7]*u[25] + uik[8]*u[26] + uik[9]*u[27]+ uik[10]*u[28]+ uik[11]*u[29]; 996*9b0e81eeSHong Zhang dk[26]+= uik[12]*u[24]+ uik[13]*u[25]+ uik[14]*u[26]+ uik[15]*u[27]+ uik[16]*u[28]+ uik[17]*u[29]; 997*9b0e81eeSHong Zhang dk[27]+= uik[18]*u[24]+ uik[19]*u[25]+ uik[20]*u[26]+ uik[21]*u[27]+ uik[22]*u[28]+ uik[23]*u[29]; 998*9b0e81eeSHong Zhang dk[28]+= uik[24]*u[24]+ uik[25]*u[25]+ uik[26]*u[26]+ uik[27]*u[27]+ uik[28]*u[28]+ uik[29]*u[29]; 999*9b0e81eeSHong Zhang dk[29]+= uik[30]*u[24]+ uik[31]*u[25]+ uik[32]*u[26]+ uik[33]*u[27]+ uik[34]*u[28]+ uik[35]*u[29]; 1000*9b0e81eeSHong Zhang 1001*9b0e81eeSHong Zhang dk[30]+= uik[0]*u[30] + uik[1]*u[31] + uik[2]*u[32] + uik[3]*u[33] + uik[4]*u[34] + uik[5]*u[35]; 1002*9b0e81eeSHong Zhang dk[31]+= uik[6]*u[30] + uik[7]*u[31] + uik[8]*u[32] + uik[9]*u[33]+ uik[10]*u[34]+ uik[11]*u[35]; 1003*9b0e81eeSHong Zhang dk[32]+= uik[12]*u[30]+ uik[13]*u[31]+ uik[14]*u[32]+ uik[15]*u[33]+ uik[16]*u[34]+ uik[17]*u[35]; 1004*9b0e81eeSHong Zhang dk[33]+= uik[18]*u[30]+ uik[19]*u[31]+ uik[20]*u[32]+ uik[21]*u[33]+ uik[22]*u[34]+ uik[23]*u[35]; 1005*9b0e81eeSHong Zhang dk[34]+= uik[24]*u[30]+ uik[25]*u[31]+ uik[26]*u[32]+ uik[27]*u[33]+ uik[28]*u[34]+ uik[29]*u[35]; 1006*9b0e81eeSHong Zhang dk[35]+= uik[30]*u[30]+ uik[31]*u[31]+ uik[32]*u[32]+ uik[33]*u[33]+ uik[34]*u[34]+ uik[35]*u[35]; 1007*9b0e81eeSHong Zhang 1008*9b0e81eeSHong Zhang /* update -U(i,k) */ 1009*9b0e81eeSHong Zhang ierr = PetscMemcpy(ba+ili*36,uik,36*sizeof(MatScalar));CHKERRQ(ierr); 1010*9b0e81eeSHong Zhang 1011*9b0e81eeSHong Zhang /* add multiple of row i to k-th row ... */ 1012*9b0e81eeSHong Zhang jmin = ili + 1; jmax = bi[i+1]; 1013*9b0e81eeSHong Zhang if (jmin < jmax){ 1014*9b0e81eeSHong Zhang for (j=jmin; j<jmax; j++) { 1015*9b0e81eeSHong Zhang /* w += -U(i,k)^T * U_bar(i,j) */ 1016*9b0e81eeSHong Zhang wp = w + bj[j]*36; 1017*9b0e81eeSHong Zhang u = ba + j*36; 1018*9b0e81eeSHong Zhang wp[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5]; 1019*9b0e81eeSHong Zhang wp[1] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2] + uik[9]*u[3]+ uik[10]*u[4]+ uik[11]*u[5]; 1020*9b0e81eeSHong Zhang wp[2] += uik[12]*u[0]+ uik[13]*u[1]+ uik[14]*u[2]+ uik[15]*u[3]+ uik[16]*u[4]+ uik[17]*u[5]; 1021*9b0e81eeSHong Zhang wp[3] += uik[18]*u[0]+ uik[19]*u[1]+ uik[20]*u[2]+ uik[21]*u[3]+ uik[22]*u[4]+ uik[23]*u[5]; 1022*9b0e81eeSHong Zhang wp[4] += uik[24]*u[0]+ uik[25]*u[1]+ uik[26]*u[2]+ uik[27]*u[3]+ uik[28]*u[4]+ uik[29]*u[5]; 1023*9b0e81eeSHong Zhang wp[5] += uik[30]*u[0]+ uik[31]*u[1]+ uik[32]*u[2]+ uik[33]*u[3]+ uik[34]*u[4]+ uik[35]*u[5]; 1024*9b0e81eeSHong Zhang 1025*9b0e81eeSHong Zhang wp[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8] + uik[3]*u[9] + uik[4]*u[10] + uik[5]*u[11]; 1026*9b0e81eeSHong Zhang wp[7] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]+ uik[10]*u[10]+ uik[11]*u[11]; 1027*9b0e81eeSHong Zhang wp[8] += uik[12]*u[6]+ uik[13]*u[7]+ uik[14]*u[8]+ uik[15]*u[9]+ uik[16]*u[10]+ uik[17]*u[11]; 1028*9b0e81eeSHong Zhang wp[9] += uik[18]*u[6]+ uik[19]*u[7]+ uik[20]*u[8]+ uik[21]*u[9]+ uik[22]*u[10]+ uik[23]*u[11]; 1029*9b0e81eeSHong Zhang wp[10]+= uik[24]*u[6]+ uik[25]*u[7]+ uik[26]*u[8]+ uik[27]*u[9]+ uik[28]*u[10]+ uik[29]*u[11]; 1030*9b0e81eeSHong Zhang wp[11]+= uik[30]*u[6]+ uik[31]*u[7]+ uik[32]*u[8]+ uik[33]*u[9]+ uik[34]*u[10]+ uik[35]*u[11]; 1031*9b0e81eeSHong Zhang 1032*9b0e81eeSHong Zhang wp[12]+= uik[0]*u[12] + uik[1]*u[13] + uik[2]*u[14] + uik[3]*u[15] + uik[4]*u[16] + uik[5]*u[17]; 1033*9b0e81eeSHong Zhang wp[13]+= uik[6]*u[12] + uik[7]*u[13] + uik[8]*u[14] + uik[9]*u[15]+ uik[10]*u[16]+ uik[11]*u[17]; 1034*9b0e81eeSHong Zhang wp[14]+= uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]+ uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]; 1035*9b0e81eeSHong Zhang wp[15]+= uik[18]*u[12]+ uik[19]*u[13]+ uik[20]*u[14]+ uik[21]*u[15]+ uik[22]*u[16]+ uik[23]*u[17]; 1036*9b0e81eeSHong Zhang wp[16]+= uik[24]*u[12]+ uik[25]*u[13]+ uik[26]*u[14]+ uik[27]*u[15]+ uik[28]*u[16]+ uik[29]*u[17]; 1037*9b0e81eeSHong Zhang wp[17]+= uik[30]*u[12]+ uik[31]*u[13]+ uik[32]*u[14]+ uik[33]*u[15]+ uik[34]*u[16]+ uik[35]*u[17]; 1038*9b0e81eeSHong Zhang 1039*9b0e81eeSHong Zhang wp[18]+= uik[0]*u[18] + uik[1]*u[19] + uik[2]*u[20] + uik[3]*u[21] + uik[4]*u[22] + uik[5]*u[23]; 1040*9b0e81eeSHong Zhang wp[19]+= uik[6]*u[18] + uik[7]*u[19] + uik[8]*u[20] + uik[9]*u[21]+ uik[10]*u[22]+ uik[11]*u[23]; 1041*9b0e81eeSHong Zhang wp[20]+= uik[12]*u[18]+ uik[13]*u[19]+ uik[14]*u[20]+ uik[15]*u[21]+ uik[16]*u[22]+ uik[17]*u[23]; 1042*9b0e81eeSHong Zhang wp[21]+= uik[18]*u[18]+ uik[19]*u[19]+ uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]; 1043*9b0e81eeSHong Zhang wp[22]+= uik[24]*u[18]+ uik[25]*u[19]+ uik[26]*u[20]+ uik[27]*u[21]+ uik[28]*u[22]+ uik[29]*u[23]; 1044*9b0e81eeSHong Zhang wp[23]+= uik[30]*u[18]+ uik[31]*u[19]+ uik[32]*u[20]+ uik[33]*u[21]+ uik[34]*u[22]+ uik[35]*u[23]; 1045*9b0e81eeSHong Zhang 1046*9b0e81eeSHong Zhang wp[24]+= uik[0]*u[24] + uik[1]*u[25] + uik[2]*u[26] + uik[3]*u[27] + uik[4]*u[28] + uik[5]*u[29]; 1047*9b0e81eeSHong Zhang wp[25]+= uik[6]*u[24] + uik[7]*u[25] + uik[8]*u[26] + uik[9]*u[27]+ uik[10]*u[28]+ uik[11]*u[29]; 1048*9b0e81eeSHong Zhang wp[26]+= uik[12]*u[24]+ uik[13]*u[25]+ uik[14]*u[26]+ uik[15]*u[27]+ uik[16]*u[28]+ uik[17]*u[29]; 1049*9b0e81eeSHong Zhang wp[27]+= uik[18]*u[24]+ uik[19]*u[25]+ uik[20]*u[26]+ uik[21]*u[27]+ uik[22]*u[28]+ uik[23]*u[29]; 1050*9b0e81eeSHong Zhang wp[28]+= uik[24]*u[24]+ uik[25]*u[25]+ uik[26]*u[26]+ uik[27]*u[27]+ uik[28]*u[28]+ uik[29]*u[29]; 1051*9b0e81eeSHong Zhang wp[29]+= uik[30]*u[24]+ uik[31]*u[25]+ uik[32]*u[26]+ uik[33]*u[27]+ uik[34]*u[28]+ uik[35]*u[29]; 1052*9b0e81eeSHong Zhang 1053*9b0e81eeSHong Zhang wp[30]+= uik[0]*u[30] + uik[1]*u[31] + uik[2]*u[32] + uik[3]*u[33] + uik[4]*u[34] + uik[5]*u[35]; 1054*9b0e81eeSHong Zhang wp[31]+= uik[6]*u[30] + uik[7]*u[31] + uik[8]*u[32] + uik[9]*u[33]+ uik[10]*u[34]+ uik[11]*u[35]; 1055*9b0e81eeSHong Zhang wp[32]+= uik[12]*u[30]+ uik[13]*u[31]+ uik[14]*u[32]+ uik[15]*u[33]+ uik[16]*u[34]+ uik[17]*u[35]; 1056*9b0e81eeSHong Zhang wp[33]+= uik[18]*u[30]+ uik[19]*u[31]+ uik[20]*u[32]+ uik[21]*u[33]+ uik[22]*u[34]+ uik[23]*u[35]; 1057*9b0e81eeSHong Zhang wp[34]+= uik[24]*u[30]+ uik[25]*u[31]+ uik[26]*u[32]+ uik[27]*u[33]+ uik[28]*u[34]+ uik[29]*u[35]; 1058*9b0e81eeSHong Zhang wp[35]+= uik[30]*u[30]+ uik[31]*u[31]+ uik[32]*u[32]+ uik[33]*u[33]+ uik[34]*u[34]+ uik[35]*u[35]; 1059*9b0e81eeSHong Zhang } 1060*9b0e81eeSHong Zhang 1061*9b0e81eeSHong Zhang /* ... add i to row list for next nonzero entry */ 1062*9b0e81eeSHong Zhang il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 1063*9b0e81eeSHong Zhang j = bj[jmin]; 1064*9b0e81eeSHong Zhang jl[i] = jl[j]; jl[j] = i; /* update jl */ 1065*9b0e81eeSHong Zhang } 1066*9b0e81eeSHong Zhang i = nexti; 1067*9b0e81eeSHong Zhang } 1068*9b0e81eeSHong Zhang 1069*9b0e81eeSHong Zhang /* save nonzero entries in k-th row of U ... */ 1070*9b0e81eeSHong Zhang 107149b5e25fSSatish Balay /* invert diagonal block */ 1072*9b0e81eeSHong Zhang d = ba+k*36; 1073*9b0e81eeSHong Zhang ierr = PetscMemcpy(d,dk,36*sizeof(MatScalar));CHKERRQ(ierr); 1074*9b0e81eeSHong Zhang ierr = Kernel_A_gets_inverse_A_6(d);CHKERRQ(ierr); 1075*9b0e81eeSHong Zhang 1076*9b0e81eeSHong Zhang jmin = bi[k]; jmax = bi[k+1]; 1077*9b0e81eeSHong Zhang if (jmin < jmax) { 1078*9b0e81eeSHong Zhang for (j=jmin; j<jmax; j++){ 1079*9b0e81eeSHong Zhang vj = bj[j]; /* block col. index of U */ 1080*9b0e81eeSHong Zhang u = ba + j*36; 1081*9b0e81eeSHong Zhang wp = w + vj*36; 1082*9b0e81eeSHong Zhang for (k1=0; k1<36; k1++){ 1083*9b0e81eeSHong Zhang *u++ = *wp; 1084*9b0e81eeSHong Zhang *wp++ = 0.0; 1085*9b0e81eeSHong Zhang } 108649b5e25fSSatish Balay } 108749b5e25fSSatish Balay 1088*9b0e81eeSHong Zhang /* ... add k to row list for first nonzero entry in k-th row */ 1089*9b0e81eeSHong Zhang il[k] = jmin; 1090*9b0e81eeSHong Zhang i = bj[jmin]; 1091*9b0e81eeSHong Zhang jl[k] = jl[i]; jl[i] = k; 1092*9b0e81eeSHong Zhang } 1093*9b0e81eeSHong Zhang } 1094*9b0e81eeSHong Zhang 1095*9b0e81eeSHong Zhang ierr = PetscFree(w);CHKERRQ(ierr); 1096*9b0e81eeSHong Zhang ierr = PetscFree(il);CHKERRQ(ierr); 1097*9b0e81eeSHong Zhang ierr = PetscFree(jl);CHKERRQ(ierr); 1098*9b0e81eeSHong Zhang ierr = PetscFree(dk);CHKERRQ(ierr); 1099*9b0e81eeSHong Zhang ierr = PetscFree(uik);CHKERRQ(ierr); 1100*9b0e81eeSHong Zhang if (a->permute){ 1101*9b0e81eeSHong Zhang ierr = PetscFree(aa);CHKERRQ(ierr); 1102*9b0e81eeSHong Zhang } 1103*9b0e81eeSHong Zhang 1104*9b0e81eeSHong Zhang ierr = ISRestoreIndices(perm,&perm_ptr);CHKERRQ(ierr); 1105*9b0e81eeSHong Zhang C->factor = FACTOR_CHOLESKY; 110649b5e25fSSatish Balay C->assembled = PETSC_TRUE; 1107*9b0e81eeSHong Zhang C->preallocated = PETSC_TRUE; 110849b5e25fSSatish Balay PLogFlops(1.3333*216*b->mbs); /* from inverting diagonal blocks */ 110949b5e25fSSatish Balay PetscFunctionReturn(0); 111049b5e25fSSatish Balay } 1111*9b0e81eeSHong Zhang 111249b5e25fSSatish Balay /* 111349b5e25fSSatish Balay Version for when blocks are 6 by 6 Using natural ordering 111449b5e25fSSatish Balay */ 111549b5e25fSSatish Balay #undef __FUNC__ 11166f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering" 11176f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering(Mat A,Mat *B) 111849b5e25fSSatish Balay { 111949b5e25fSSatish Balay Mat C = *B; 112049b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 112149b5e25fSSatish Balay int ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 112249b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 112349b5e25fSSatish Balay int *diag_offset = b->diag,*ai=a->i,*aj=a->j,*pj; 112449b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 112549b5e25fSSatish Balay MatScalar x1,x2,x3,x4,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15; 112649b5e25fSSatish Balay MatScalar x16,x17,x18,x19,x20,x21,x22,x23,x24,x25; 112749b5e25fSSatish Balay MatScalar p1,p2,p3,p4,p5,p6,p7,p8,p9,p10,p11,p12,p13,p14,p15; 112849b5e25fSSatish Balay MatScalar p16,p17,p18,p19,p20,p21,p22,p23,p24,p25; 112949b5e25fSSatish Balay MatScalar m1,m2,m3,m4,m5,m6,m7,m8,m9,m10,m11,m12,m13,m14,m15; 113049b5e25fSSatish Balay MatScalar m16,m17,m18,m19,m20,m21,m22,m23,m24,m25; 113149b5e25fSSatish Balay MatScalar p26,p27,p28,p29,p30,p31,p32,p33,p34,p35,p36; 113249b5e25fSSatish Balay MatScalar x26,x27,x28,x29,x30,x31,x32,x33,x34,x35,x36; 113349b5e25fSSatish Balay MatScalar m26,m27,m28,m29,m30,m31,m32,m33,m34,m35,m36; 113449b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 113549b5e25fSSatish Balay 113649b5e25fSSatish Balay PetscFunctionBegin; 113749b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(36*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 113849b5e25fSSatish Balay for (i=0; i<n; i++) { 113949b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 114049b5e25fSSatish Balay ajtmp = bj + bi[i]; 114149b5e25fSSatish Balay for (j=0; j<nz; j++) { 114249b5e25fSSatish Balay x = rtmp+36*ajtmp[j]; 114349b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = x[4] = x[5] = x[6] = x[7] = x[8] = x[9] = 0.0; 114449b5e25fSSatish Balay x[10] = x[11] = x[12] = x[13] = x[14] = x[15] = x[16] = x[17] = 0.0; 114549b5e25fSSatish Balay x[18] = x[19] = x[20] = x[21] = x[22] = x[23] = x[24] = x[25] = 0.0 ; 114649b5e25fSSatish Balay x[26] = x[27] = x[28] = x[29] = x[30] = x[31] = x[32] = x[33] = 0.0 ; 114749b5e25fSSatish Balay x[34] = x[35] = 0.0 ; 114849b5e25fSSatish Balay } 114949b5e25fSSatish Balay /* load in initial (unfactored row) */ 115049b5e25fSSatish Balay nz = ai[i+1] - ai[i]; 115149b5e25fSSatish Balay ajtmpold = aj + ai[i]; 115249b5e25fSSatish Balay v = aa + 36*ai[i]; 115349b5e25fSSatish Balay for (j=0; j<nz; j++) { 115449b5e25fSSatish Balay x = rtmp+36*ajtmpold[j]; 115549b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 115649b5e25fSSatish Balay x[4] = v[4]; x[5] = v[5]; x[6] = v[6]; x[7] = v[7]; 115749b5e25fSSatish Balay x[8] = v[8]; x[9] = v[9]; x[10] = v[10]; x[11] = v[11]; 115849b5e25fSSatish Balay x[12] = v[12]; x[13] = v[13]; x[14] = v[14]; x[15] = v[15]; 115949b5e25fSSatish Balay x[16] = v[16]; x[17] = v[17]; x[18] = v[18]; x[19] = v[19]; 116049b5e25fSSatish Balay x[20] = v[20]; x[21] = v[21]; x[22] = v[22]; x[23] = v[23]; 116149b5e25fSSatish Balay x[24] = v[24]; x[25] = v[25]; x[26] = v[26]; x[27] = v[27]; 116249b5e25fSSatish Balay x[28] = v[28]; x[29] = v[29]; x[30] = v[30]; x[31] = v[31]; 116349b5e25fSSatish Balay x[32] = v[32]; x[33] = v[33]; x[34] = v[34]; x[35] = v[35]; 116449b5e25fSSatish Balay v += 36; 116549b5e25fSSatish Balay } 116649b5e25fSSatish Balay row = *ajtmp++; 116749b5e25fSSatish Balay while (row < i) { 116849b5e25fSSatish Balay pc = rtmp + 36*row; 116949b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 117049b5e25fSSatish Balay p5 = pc[4]; p6 = pc[5]; p7 = pc[6]; p8 = pc[7]; 117149b5e25fSSatish Balay p9 = pc[8]; p10 = pc[9]; p11 = pc[10]; p12 = pc[11]; 117249b5e25fSSatish Balay p13 = pc[12]; p14 = pc[13]; p15 = pc[14]; p16 = pc[15]; 117349b5e25fSSatish Balay p17 = pc[16]; p18 = pc[17]; p19 = pc[18]; p20 = pc[19]; 117449b5e25fSSatish Balay p21 = pc[20]; p22 = pc[21]; p23 = pc[22]; p24 = pc[23]; 117549b5e25fSSatish Balay p25 = pc[24]; p26 = pc[25]; p27 = pc[26]; p28 = pc[27]; 117649b5e25fSSatish Balay p29 = pc[28]; p30 = pc[29]; p31 = pc[30]; p32 = pc[31]; 117749b5e25fSSatish Balay p33 = pc[32]; p34 = pc[33]; p35 = pc[34]; p36 = pc[35]; 117849b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0 || 117949b5e25fSSatish Balay p5 != 0.0 || p6 != 0.0 || p7 != 0.0 || p8 != 0.0 || 118049b5e25fSSatish Balay p9 != 0.0 || p10 != 0.0 || p11 != 0.0 || p12 != 0.0 || 118149b5e25fSSatish Balay p13 != 0.0 || p14 != 0.0 || p15 != 0.0 || p16 != 0.0 || 118249b5e25fSSatish Balay p17 != 0.0 || p18 != 0.0 || p19 != 0.0 || p20 != 0.0 || 118349b5e25fSSatish Balay p21 != 0.0 || p22 != 0.0 || p23 != 0.0 || p24 != 0.0 || 118449b5e25fSSatish Balay p25 != 0.0 || p26 != 0.0 || p27 != 0.0 || p28 != 0.0 || 118549b5e25fSSatish Balay p29 != 0.0 || p30 != 0.0 || p31 != 0.0 || p32 != 0.0 || 118649b5e25fSSatish Balay p33 != 0.0 || p34 != 0.0 || p35 != 0.0 || p36 != 0.0) { 118749b5e25fSSatish Balay pv = ba + 36*diag_offset[row]; 118849b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 118949b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 119049b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; 119149b5e25fSSatish Balay x9 = pv[8]; x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; 119249b5e25fSSatish Balay x13 = pv[12]; x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 119349b5e25fSSatish Balay x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; x20 = pv[19]; 119449b5e25fSSatish Balay x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 119549b5e25fSSatish Balay x25 = pv[24]; x26 = pv[25]; x27 = pv[26]; x28 = pv[27]; 119649b5e25fSSatish Balay x29 = pv[28]; x30 = pv[29]; x31 = pv[30]; x32 = pv[31]; 119749b5e25fSSatish Balay x33 = pv[32]; x34 = pv[33]; x35 = pv[34]; x36 = pv[35]; 119849b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p7*x2 + p13*x3 + p19*x4 + p25*x5 + p31*x6; 119949b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p8*x2 + p14*x3 + p20*x4 + p26*x5 + p32*x6; 120049b5e25fSSatish Balay pc[2] = m3 = p3*x1 + p9*x2 + p15*x3 + p21*x4 + p27*x5 + p33*x6; 120149b5e25fSSatish Balay pc[3] = m4 = p4*x1 + p10*x2 + p16*x3 + p22*x4 + p28*x5 + p34*x6; 120249b5e25fSSatish Balay pc[4] = m5 = p5*x1 + p11*x2 + p17*x3 + p23*x4 + p29*x5 + p35*x6; 120349b5e25fSSatish Balay pc[5] = m6 = p6*x1 + p12*x2 + p18*x3 + p24*x4 + p30*x5 + p36*x6; 120449b5e25fSSatish Balay 120549b5e25fSSatish Balay pc[6] = m7 = p1*x7 + p7*x8 + p13*x9 + p19*x10 + p25*x11 + p31*x12; 120649b5e25fSSatish Balay pc[7] = m8 = p2*x7 + p8*x8 + p14*x9 + p20*x10 + p26*x11 + p32*x12; 120749b5e25fSSatish Balay pc[8] = m9 = p3*x7 + p9*x8 + p15*x9 + p21*x10 + p27*x11 + p33*x12; 120849b5e25fSSatish Balay pc[9] = m10 = p4*x7 + p10*x8 + p16*x9 + p22*x10 + p28*x11 + p34*x12; 120949b5e25fSSatish Balay pc[10] = m11 = p5*x7 + p11*x8 + p17*x9 + p23*x10 + p29*x11 + p35*x12; 121049b5e25fSSatish Balay pc[11] = m12 = p6*x7 + p12*x8 + p18*x9 + p24*x10 + p30*x11 + p36*x12; 121149b5e25fSSatish Balay 121249b5e25fSSatish Balay pc[12] = m13 = p1*x13 + p7*x14 + p13*x15 + p19*x16 + p25*x17 + p31*x18; 121349b5e25fSSatish Balay pc[13] = m14 = p2*x13 + p8*x14 + p14*x15 + p20*x16 + p26*x17 + p32*x18; 121449b5e25fSSatish Balay pc[14] = m15 = p3*x13 + p9*x14 + p15*x15 + p21*x16 + p27*x17 + p33*x18; 121549b5e25fSSatish Balay pc[15] = m16 = p4*x13 + p10*x14 + p16*x15 + p22*x16 + p28*x17 + p34*x18; 121649b5e25fSSatish Balay pc[16] = m17 = p5*x13 + p11*x14 + p17*x15 + p23*x16 + p29*x17 + p35*x18; 121749b5e25fSSatish Balay pc[17] = m18 = p6*x13 + p12*x14 + p18*x15 + p24*x16 + p30*x17 + p36*x18; 121849b5e25fSSatish Balay 121949b5e25fSSatish Balay pc[18] = m19 = p1*x19 + p7*x20 + p13*x21 + p19*x22 + p25*x23 + p31*x24; 122049b5e25fSSatish Balay pc[19] = m20 = p2*x19 + p8*x20 + p14*x21 + p20*x22 + p26*x23 + p32*x24; 122149b5e25fSSatish Balay pc[20] = m21 = p3*x19 + p9*x20 + p15*x21 + p21*x22 + p27*x23 + p33*x24; 122249b5e25fSSatish Balay pc[21] = m22 = p4*x19 + p10*x20 + p16*x21 + p22*x22 + p28*x23 + p34*x24; 122349b5e25fSSatish Balay pc[22] = m23 = p5*x19 + p11*x20 + p17*x21 + p23*x22 + p29*x23 + p35*x24; 122449b5e25fSSatish Balay pc[23] = m24 = p6*x19 + p12*x20 + p18*x21 + p24*x22 + p30*x23 + p36*x24; 122549b5e25fSSatish Balay 122649b5e25fSSatish Balay pc[24] = m25 = p1*x25 + p7*x26 + p13*x27 + p19*x28 + p25*x29 + p31*x30; 122749b5e25fSSatish Balay pc[25] = m26 = p2*x25 + p8*x26 + p14*x27 + p20*x28 + p26*x29 + p32*x30; 122849b5e25fSSatish Balay pc[26] = m27 = p3*x25 + p9*x26 + p15*x27 + p21*x28 + p27*x29 + p33*x30; 122949b5e25fSSatish Balay pc[27] = m28 = p4*x25 + p10*x26 + p16*x27 + p22*x28 + p28*x29 + p34*x30; 123049b5e25fSSatish Balay pc[28] = m29 = p5*x25 + p11*x26 + p17*x27 + p23*x28 + p29*x29 + p35*x30; 123149b5e25fSSatish Balay pc[29] = m30 = p6*x25 + p12*x26 + p18*x27 + p24*x28 + p30*x29 + p36*x30; 123249b5e25fSSatish Balay 123349b5e25fSSatish Balay pc[30] = m31 = p1*x31 + p7*x32 + p13*x33 + p19*x34 + p25*x35 + p31*x36; 123449b5e25fSSatish Balay pc[31] = m32 = p2*x31 + p8*x32 + p14*x33 + p20*x34 + p26*x35 + p32*x36; 123549b5e25fSSatish Balay pc[32] = m33 = p3*x31 + p9*x32 + p15*x33 + p21*x34 + p27*x35 + p33*x36; 123649b5e25fSSatish Balay pc[33] = m34 = p4*x31 + p10*x32 + p16*x33 + p22*x34 + p28*x35 + p34*x36; 123749b5e25fSSatish Balay pc[34] = m35 = p5*x31 + p11*x32 + p17*x33 + p23*x34 + p29*x35 + p35*x36; 123849b5e25fSSatish Balay pc[35] = m36 = p6*x31 + p12*x32 + p18*x33 + p24*x34 + p30*x35 + p36*x36; 123949b5e25fSSatish Balay 124049b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 124149b5e25fSSatish Balay pv += 36; 124249b5e25fSSatish Balay for (j=0; j<nz; j++) { 124349b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 124449b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; 124549b5e25fSSatish Balay x9 = pv[8]; x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; 124649b5e25fSSatish Balay x13 = pv[12]; x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 124749b5e25fSSatish Balay x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; x20 = pv[19]; 124849b5e25fSSatish Balay x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 124949b5e25fSSatish Balay x25 = pv[24]; x26 = pv[25]; x27 = pv[26]; x28 = pv[27]; 125049b5e25fSSatish Balay x29 = pv[28]; x30 = pv[29]; x31 = pv[30]; x32 = pv[31]; 125149b5e25fSSatish Balay x33 = pv[32]; x34 = pv[33]; x35 = pv[34]; x36 = pv[35]; 125249b5e25fSSatish Balay x = rtmp + 36*pj[j]; 125349b5e25fSSatish Balay x[0] -= m1*x1 + m7*x2 + m13*x3 + m19*x4 + m25*x5 + m31*x6; 125449b5e25fSSatish Balay x[1] -= m2*x1 + m8*x2 + m14*x3 + m20*x4 + m26*x5 + m32*x6; 125549b5e25fSSatish Balay x[2] -= m3*x1 + m9*x2 + m15*x3 + m21*x4 + m27*x5 + m33*x6; 125649b5e25fSSatish Balay x[3] -= m4*x1 + m10*x2 + m16*x3 + m22*x4 + m28*x5 + m34*x6; 125749b5e25fSSatish Balay x[4] -= m5*x1 + m11*x2 + m17*x3 + m23*x4 + m29*x5 + m35*x6; 125849b5e25fSSatish Balay x[5] -= m6*x1 + m12*x2 + m18*x3 + m24*x4 + m30*x5 + m36*x6; 125949b5e25fSSatish Balay 126049b5e25fSSatish Balay x[6] -= m1*x7 + m7*x8 + m13*x9 + m19*x10 + m25*x11 + m31*x12; 126149b5e25fSSatish Balay x[7] -= m2*x7 + m8*x8 + m14*x9 + m20*x10 + m26*x11 + m32*x12; 126249b5e25fSSatish Balay x[8] -= m3*x7 + m9*x8 + m15*x9 + m21*x10 + m27*x11 + m33*x12; 126349b5e25fSSatish Balay x[9] -= m4*x7 + m10*x8 + m16*x9 + m22*x10 + m28*x11 + m34*x12; 126449b5e25fSSatish Balay x[10] -= m5*x7 + m11*x8 + m17*x9 + m23*x10 + m29*x11 + m35*x12; 126549b5e25fSSatish Balay x[11] -= m6*x7 + m12*x8 + m18*x9 + m24*x10 + m30*x11 + m36*x12; 126649b5e25fSSatish Balay 126749b5e25fSSatish Balay x[12] -= m1*x13 + m7*x14 + m13*x15 + m19*x16 + m25*x17 + m31*x18; 126849b5e25fSSatish Balay x[13] -= m2*x13 + m8*x14 + m14*x15 + m20*x16 + m26*x17 + m32*x18; 126949b5e25fSSatish Balay x[14] -= m3*x13 + m9*x14 + m15*x15 + m21*x16 + m27*x17 + m33*x18; 127049b5e25fSSatish Balay x[15] -= m4*x13 + m10*x14 + m16*x15 + m22*x16 + m28*x17 + m34*x18; 127149b5e25fSSatish Balay x[16] -= m5*x13 + m11*x14 + m17*x15 + m23*x16 + m29*x17 + m35*x18; 127249b5e25fSSatish Balay x[17] -= m6*x13 + m12*x14 + m18*x15 + m24*x16 + m30*x17 + m36*x18; 127349b5e25fSSatish Balay 127449b5e25fSSatish Balay x[18] -= m1*x19 + m7*x20 + m13*x21 + m19*x22 + m25*x23 + m31*x24; 127549b5e25fSSatish Balay x[19] -= m2*x19 + m8*x20 + m14*x21 + m20*x22 + m26*x23 + m32*x24; 127649b5e25fSSatish Balay x[20] -= m3*x19 + m9*x20 + m15*x21 + m21*x22 + m27*x23 + m33*x24; 127749b5e25fSSatish Balay x[21] -= m4*x19 + m10*x20 + m16*x21 + m22*x22 + m28*x23 + m34*x24; 127849b5e25fSSatish Balay x[22] -= m5*x19 + m11*x20 + m17*x21 + m23*x22 + m29*x23 + m35*x24; 127949b5e25fSSatish Balay x[23] -= m6*x19 + m12*x20 + m18*x21 + m24*x22 + m30*x23 + m36*x24; 128049b5e25fSSatish Balay 128149b5e25fSSatish Balay x[24] -= m1*x25 + m7*x26 + m13*x27 + m19*x28 + m25*x29 + m31*x30; 128249b5e25fSSatish Balay x[25] -= m2*x25 + m8*x26 + m14*x27 + m20*x28 + m26*x29 + m32*x30; 128349b5e25fSSatish Balay x[26] -= m3*x25 + m9*x26 + m15*x27 + m21*x28 + m27*x29 + m33*x30; 128449b5e25fSSatish Balay x[27] -= m4*x25 + m10*x26 + m16*x27 + m22*x28 + m28*x29 + m34*x30; 128549b5e25fSSatish Balay x[28] -= m5*x25 + m11*x26 + m17*x27 + m23*x28 + m29*x29 + m35*x30; 128649b5e25fSSatish Balay x[29] -= m6*x25 + m12*x26 + m18*x27 + m24*x28 + m30*x29 + m36*x30; 128749b5e25fSSatish Balay 128849b5e25fSSatish Balay x[30] -= m1*x31 + m7*x32 + m13*x33 + m19*x34 + m25*x35 + m31*x36; 128949b5e25fSSatish Balay x[31] -= m2*x31 + m8*x32 + m14*x33 + m20*x34 + m26*x35 + m32*x36; 129049b5e25fSSatish Balay x[32] -= m3*x31 + m9*x32 + m15*x33 + m21*x34 + m27*x35 + m33*x36; 129149b5e25fSSatish Balay x[33] -= m4*x31 + m10*x32 + m16*x33 + m22*x34 + m28*x35 + m34*x36; 129249b5e25fSSatish Balay x[34] -= m5*x31 + m11*x32 + m17*x33 + m23*x34 + m29*x35 + m35*x36; 129349b5e25fSSatish Balay x[35] -= m6*x31 + m12*x32 + m18*x33 + m24*x34 + m30*x35 + m36*x36; 129449b5e25fSSatish Balay 129549b5e25fSSatish Balay pv += 36; 129649b5e25fSSatish Balay } 129749b5e25fSSatish Balay PLogFlops(432*nz+396); 129849b5e25fSSatish Balay } 129949b5e25fSSatish Balay row = *ajtmp++; 130049b5e25fSSatish Balay } 130149b5e25fSSatish Balay /* finished row so stick it into b->a */ 130249b5e25fSSatish Balay pv = ba + 36*bi[i]; 130349b5e25fSSatish Balay pj = bj + bi[i]; 130449b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 130549b5e25fSSatish Balay for (j=0; j<nz; j++) { 130649b5e25fSSatish Balay x = rtmp+36*pj[j]; 130749b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 130849b5e25fSSatish Balay pv[4] = x[4]; pv[5] = x[5]; pv[6] = x[6]; pv[7] = x[7]; 130949b5e25fSSatish Balay pv[8] = x[8]; pv[9] = x[9]; pv[10] = x[10]; pv[11] = x[11]; 131049b5e25fSSatish Balay pv[12] = x[12]; pv[13] = x[13]; pv[14] = x[14]; pv[15] = x[15]; 131149b5e25fSSatish Balay pv[16] = x[16]; pv[17] = x[17]; pv[18] = x[18]; pv[19] = x[19]; 131249b5e25fSSatish Balay pv[20] = x[20]; pv[21] = x[21]; pv[22] = x[22]; pv[23] = x[23]; 131349b5e25fSSatish Balay pv[24] = x[24]; pv[25] = x[25]; pv[26] = x[26]; pv[27] = x[27]; 131449b5e25fSSatish Balay pv[28] = x[28]; pv[29] = x[29]; pv[30] = x[30]; pv[31] = x[31]; 131549b5e25fSSatish Balay pv[32] = x[32]; pv[33] = x[33]; pv[34] = x[34]; pv[35] = x[35]; 131649b5e25fSSatish Balay pv += 36; 131749b5e25fSSatish Balay } 131849b5e25fSSatish Balay /* invert diagonal block */ 131949b5e25fSSatish Balay w = ba + 36*diag_offset[i]; 132049b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_6(w);CHKERRQ(ierr); 132149b5e25fSSatish Balay } 132249b5e25fSSatish Balay 132349b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 132449b5e25fSSatish Balay C->factor = FACTOR_LU; 132549b5e25fSSatish Balay C->assembled = PETSC_TRUE; 132649b5e25fSSatish Balay PLogFlops(1.3333*216*b->mbs); /* from inverting diagonal blocks */ 132749b5e25fSSatish Balay PetscFunctionReturn(0); 132849b5e25fSSatish Balay } 132949b5e25fSSatish Balay 1330b59abe41SHong Zhang /* Version for when blocks are 5 by 5 */ 1331b59abe41SHong Zhang #undef __FUNC__ 1332b59abe41SHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_5" 1333b59abe41SHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_5(Mat A,Mat *B) 1334b59abe41SHong Zhang { 1335b59abe41SHong Zhang Mat C = *B; 1336b59abe41SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 1337b59abe41SHong Zhang IS perm = b->row; 1338b59abe41SHong Zhang int *perm_ptr,ierr,i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 1339b59abe41SHong Zhang int *ai,*aj,*a2anew,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili; 1340b59abe41SHong Zhang MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 1341b59abe41SHong Zhang MatScalar *u,*d,*rtmp,*rtmp_ptr; 1342b59abe41SHong Zhang 1343b59abe41SHong Zhang PetscFunctionBegin; 1344b59abe41SHong Zhang /* initialization */ 1345b59abe41SHong Zhang rtmp = (MatScalar*)PetscMalloc(25*mbs*sizeof(MatScalar));CHKPTRQ(rtmp); 1346b59abe41SHong Zhang ierr = PetscMemzero(rtmp,25*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1347b59abe41SHong Zhang il = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(il); 1348b59abe41SHong Zhang jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 1349b59abe41SHong Zhang for (i=0; i<mbs; i++) { 1350b59abe41SHong Zhang jl[i] = mbs; il[0] = 0; 1351b59abe41SHong Zhang } 1352b59abe41SHong Zhang dk = (MatScalar*)PetscMalloc(25*sizeof(MatScalar));CHKPTRQ(dk); 1353b59abe41SHong Zhang uik = (MatScalar*)PetscMalloc(25*sizeof(MatScalar));CHKPTRQ(uik); 1354b59abe41SHong Zhang ierr = ISGetIndices(perm,&perm_ptr);CHKERRQ(ierr); 1355b59abe41SHong Zhang 1356b59abe41SHong Zhang /* check permutation */ 1357b59abe41SHong Zhang if (!a->permute){ 1358b59abe41SHong Zhang ai = a->i; aj = a->j; aa = a->a; 1359b59abe41SHong Zhang } else { 1360b59abe41SHong Zhang ai = a->inew; aj = a->jnew; 1361b59abe41SHong Zhang aa = (MatScalar*)PetscMalloc(25*ai[mbs]*sizeof(MatScalar));CHKPTRQ(aa); 1362b59abe41SHong Zhang ierr = PetscMemcpy(aa,a->a,25*ai[mbs]*sizeof(MatScalar));CHKERRQ(ierr); 1363b59abe41SHong Zhang a2anew = (int*)PetscMalloc(ai[mbs]*sizeof(int));CHKPTRQ(a2anew); 1364b59abe41SHong Zhang ierr= PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(int));CHKERRQ(ierr); 1365b59abe41SHong Zhang 1366b59abe41SHong Zhang for (i=0; i<mbs; i++){ 1367b59abe41SHong Zhang jmin = ai[i]; jmax = ai[i+1]; 1368b59abe41SHong Zhang for (j=jmin; j<jmax; j++){ 1369b59abe41SHong Zhang while (a2anew[j] != j){ 1370b59abe41SHong Zhang k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k; 1371b59abe41SHong Zhang for (k1=0; k1<25; k1++){ 1372b59abe41SHong Zhang dk[k1] = aa[k*25+k1]; 1373b59abe41SHong Zhang aa[k*25+k1] = aa[j*25+k1]; 1374b59abe41SHong Zhang aa[j*25+k1] = dk[k1]; 1375b59abe41SHong Zhang } 1376b59abe41SHong Zhang } 1377b59abe41SHong Zhang /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */ 1378b59abe41SHong Zhang if (i > aj[j]){ 1379b59abe41SHong Zhang /* printf("change orientation, row: %d, col: %d\n",i,aj[j]); */ 1380b59abe41SHong Zhang ap = aa + j*25; /* ptr to the beginning of j-th block of aa */ 1381b59abe41SHong Zhang for (k=0; k<25; k++) dk[k] = ap[k]; /* dk <- j-th block of aa */ 1382b59abe41SHong Zhang for (k=0; k<5; k++){ /* j-th block of aa <- dk^T */ 1383b59abe41SHong Zhang for (k1=0; k1<5; k1++) *ap++ = dk[k + 5*k1]; 1384b59abe41SHong Zhang } 1385b59abe41SHong Zhang } 1386b59abe41SHong Zhang } 1387b59abe41SHong Zhang } 1388b59abe41SHong Zhang ierr = PetscFree(a2anew);CHKERRA(ierr); 1389b59abe41SHong Zhang } 1390b59abe41SHong Zhang 1391b59abe41SHong Zhang /* for each row k */ 1392b59abe41SHong Zhang for (k = 0; k<mbs; k++){ 1393b59abe41SHong Zhang 1394b59abe41SHong Zhang /*initialize k-th row with elements nonzero in row perm(k) of A */ 1395b59abe41SHong Zhang jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1]; 1396b59abe41SHong Zhang if (jmin < jmax) { 1397b59abe41SHong Zhang ap = aa + jmin*25; 1398b59abe41SHong Zhang for (j = jmin; j < jmax; j++){ 1399b59abe41SHong Zhang vj = perm_ptr[aj[j]]; /* block col. index */ 1400b59abe41SHong Zhang rtmp_ptr = rtmp + vj*25; 1401b59abe41SHong Zhang for (i=0; i<25; i++) *rtmp_ptr++ = *ap++; 1402b59abe41SHong Zhang } 1403b59abe41SHong Zhang } 1404b59abe41SHong Zhang 1405b59abe41SHong Zhang /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 1406b59abe41SHong Zhang ierr = PetscMemcpy(dk,rtmp+k*25,25*sizeof(MatScalar));CHKERRQ(ierr); 1407b59abe41SHong Zhang i = jl[k]; /* first row to be added to k_th row */ 1408b59abe41SHong Zhang 1409b59abe41SHong Zhang while (i < mbs){ 1410b59abe41SHong Zhang nexti = jl[i]; /* next row to be added to k_th row */ 1411b59abe41SHong Zhang 1412b59abe41SHong Zhang /* compute multiplier */ 1413b59abe41SHong Zhang ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 1414b59abe41SHong Zhang 1415b59abe41SHong Zhang /* uik = -inv(Di)*U_bar(i,k) */ 1416b59abe41SHong Zhang d = ba + i*25; 1417b59abe41SHong Zhang u = ba + ili*25; 1418b59abe41SHong Zhang 1419b59abe41SHong Zhang uik[0] = -(d[0]*u[0] + d[5]*u[1] + d[10]*u[2] + d[15]*u[3] + d[20]*u[4]); 1420b59abe41SHong Zhang uik[1] = -(d[1]*u[0] + d[6]*u[1] + d[11]*u[2] + d[16]*u[3] + d[21]*u[4]); 1421b59abe41SHong Zhang uik[2] = -(d[2]*u[0] + d[7]*u[1] + d[12]*u[2] + d[17]*u[3] + d[22]*u[4]); 1422b59abe41SHong Zhang uik[3] = -(d[3]*u[0] + d[8]*u[1] + d[13]*u[2] + d[18]*u[3] + d[23]*u[4]); 1423b59abe41SHong Zhang uik[4] = -(d[4]*u[0] + d[9]*u[1] + d[14]*u[2] + d[19]*u[3] + d[24]*u[4]); 1424b59abe41SHong Zhang 1425b59abe41SHong Zhang uik[5] = -(d[0]*u[5] + d[5]*u[6] + d[10]*u[7] + d[15]*u[8] + d[20]*u[9]); 1426b59abe41SHong Zhang uik[6] = -(d[1]*u[5] + d[6]*u[6] + d[11]*u[7] + d[16]*u[8] + d[21]*u[9]); 1427b59abe41SHong Zhang uik[7] = -(d[2]*u[5] + d[7]*u[6] + d[12]*u[7] + d[17]*u[8] + d[22]*u[9]); 1428b59abe41SHong Zhang uik[8] = -(d[3]*u[5] + d[8]*u[6] + d[13]*u[7] + d[18]*u[8] + d[23]*u[9]); 1429b59abe41SHong Zhang uik[9] = -(d[4]*u[5] + d[9]*u[6] + d[14]*u[7] + d[19]*u[8] + d[24]*u[9]); 1430b59abe41SHong Zhang 1431b59abe41SHong Zhang uik[10]= -(d[0]*u[10] + d[5]*u[11] + d[10]*u[12] + d[15]*u[13] + d[20]*u[14]); 1432b59abe41SHong Zhang uik[11]= -(d[1]*u[10] + d[6]*u[11] + d[11]*u[12] + d[16]*u[13] + d[21]*u[14]); 1433b59abe41SHong Zhang uik[12]= -(d[2]*u[10] + d[7]*u[11] + d[12]*u[12] + d[17]*u[13] + d[22]*u[14]); 1434b59abe41SHong Zhang uik[13]= -(d[3]*u[10] + d[8]*u[11] + d[13]*u[12] + d[18]*u[13] + d[23]*u[14]); 1435b59abe41SHong Zhang uik[14]= -(d[4]*u[10] + d[9]*u[11] + d[14]*u[12] + d[19]*u[13] + d[24]*u[14]); 1436b59abe41SHong Zhang 1437b59abe41SHong Zhang uik[15]= -(d[0]*u[15] + d[5]*u[16] + d[10]*u[17] + d[15]*u[18] + d[20]*u[19]); 1438b59abe41SHong Zhang uik[16]= -(d[1]*u[15] + d[6]*u[16] + d[11]*u[17] + d[16]*u[18] + d[21]*u[19]); 1439b59abe41SHong Zhang uik[17]= -(d[2]*u[15] + d[7]*u[16] + d[12]*u[17] + d[17]*u[18] + d[22]*u[19]); 1440b59abe41SHong Zhang uik[18]= -(d[3]*u[15] + d[8]*u[16] + d[13]*u[17] + d[18]*u[18] + d[23]*u[19]); 1441b59abe41SHong Zhang uik[19]= -(d[4]*u[15] + d[9]*u[16] + d[14]*u[17] + d[19]*u[18] + d[24]*u[19]); 1442b59abe41SHong Zhang 1443b59abe41SHong Zhang uik[20]= -(d[0]*u[20] + d[5]*u[21] + d[10]*u[22] + d[15]*u[23] + d[20]*u[24]); 1444b59abe41SHong Zhang uik[21]= -(d[1]*u[20] + d[6]*u[21] + d[11]*u[22] + d[16]*u[23] + d[21]*u[24]); 1445b59abe41SHong Zhang uik[22]= -(d[2]*u[20] + d[7]*u[21] + d[12]*u[22] + d[17]*u[23] + d[22]*u[24]); 1446b59abe41SHong Zhang uik[23]= -(d[3]*u[20] + d[8]*u[21] + d[13]*u[22] + d[18]*u[23] + d[23]*u[24]); 1447b59abe41SHong Zhang uik[24]= -(d[4]*u[20] + d[9]*u[21] + d[14]*u[22] + d[19]*u[23] + d[24]*u[24]); 1448b59abe41SHong Zhang 1449b59abe41SHong Zhang 1450936bb232SHong Zhang /* update D(k) += -U(i,k)^T * U_bar(i,k) */ 1451936bb232SHong Zhang dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4]; 1452936bb232SHong Zhang dk[1] += uik[5]*u[0] + uik[6]*u[1] + uik[7]*u[2] + uik[8]*u[3] + uik[9]*u[4]; 1453936bb232SHong Zhang dk[2] += uik[10]*u[0]+ uik[11]*u[1]+ uik[12]*u[2]+ uik[13]*u[3]+ uik[14]*u[4]; 1454936bb232SHong Zhang dk[3] += uik[15]*u[0]+ uik[16]*u[1]+ uik[17]*u[2]+ uik[18]*u[3]+ uik[19]*u[4]; 1455936bb232SHong Zhang dk[4] += uik[20]*u[0]+ uik[21]*u[1]+ uik[22]*u[2]+ uik[23]*u[3]+ uik[24]*u[4]; 1456b59abe41SHong Zhang 1457936bb232SHong Zhang dk[5] += uik[0]*u[5] + uik[1]*u[6] + uik[2]*u[7] + uik[3]*u[8] + uik[4]*u[9]; 1458936bb232SHong Zhang dk[6] += uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]; 1459936bb232SHong Zhang dk[7] += uik[10]*u[5]+ uik[11]*u[6]+ uik[12]*u[7]+ uik[13]*u[8]+ uik[14]*u[9]; 1460936bb232SHong Zhang dk[8] += uik[15]*u[5]+ uik[16]*u[6]+ uik[17]*u[7]+ uik[18]*u[8]+ uik[19]*u[9]; 1461936bb232SHong Zhang dk[9] += uik[20]*u[5]+ uik[21]*u[6]+ uik[22]*u[7]+ uik[23]*u[8]+ uik[24]*u[9]; 1462b59abe41SHong Zhang 1463936bb232SHong Zhang dk[10] += uik[0]*u[10] + uik[1]*u[11] + uik[2]*u[12] + uik[3]*u[13] + uik[4]*u[14]; 1464936bb232SHong Zhang dk[11] += uik[5]*u[10] + uik[6]*u[11] + uik[7]*u[12] + uik[8]*u[13] + uik[9]*u[14]; 1465936bb232SHong Zhang dk[12] += uik[10]*u[10]+ uik[11]*u[11]+ uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]; 1466936bb232SHong Zhang dk[13] += uik[15]*u[10]+ uik[16]*u[11]+ uik[17]*u[12]+ uik[18]*u[13]+ uik[19]*u[14]; 1467936bb232SHong Zhang dk[14] += uik[20]*u[10]+ uik[21]*u[11]+ uik[22]*u[12]+ uik[23]*u[13]+ uik[24]*u[14]; 1468b59abe41SHong Zhang 1469936bb232SHong Zhang dk[15] += uik[0]*u[15] + uik[1]*u[16] + uik[2]*u[17] + uik[3]*u[18] + uik[4]*u[19]; 1470936bb232SHong Zhang dk[16] += uik[5]*u[15] + uik[6]*u[16] + uik[7]*u[17] + uik[8]*u[18] + uik[9]*u[19]; 1471936bb232SHong Zhang dk[17] += uik[10]*u[15]+ uik[11]*u[16]+ uik[12]*u[17]+ uik[13]*u[18]+ uik[14]*u[19]; 1472936bb232SHong Zhang dk[18] += uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]+ uik[18]*u[18]+ uik[19]*u[19]; 1473936bb232SHong Zhang dk[19] += uik[20]*u[15]+ uik[21]*u[16]+ uik[22]*u[17]+ uik[23]*u[18]+ uik[24]*u[19]; 1474936bb232SHong Zhang 1475936bb232SHong Zhang dk[20] += uik[0]*u[20] + uik[1]*u[21] + uik[2]*u[22] + uik[3]*u[23] + uik[4]*u[24]; 1476936bb232SHong Zhang dk[21] += uik[5]*u[20] + uik[6]*u[21] + uik[7]*u[22] + uik[8]*u[23] + uik[9]*u[24]; 1477936bb232SHong Zhang dk[22] += uik[10]*u[20]+ uik[11]*u[21]+ uik[12]*u[22]+ uik[13]*u[23]+ uik[14]*u[24]; 1478936bb232SHong Zhang dk[23] += uik[15]*u[20]+ uik[16]*u[21]+ uik[17]*u[22]+ uik[18]*u[23]+ uik[19]*u[24]; 14794f078a5fSHong Zhang dk[24] += uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]+ uik[24]*u[24]; 1480b59abe41SHong Zhang 1481b59abe41SHong Zhang /* update -U(i,k) */ 1482b59abe41SHong Zhang ierr = PetscMemcpy(ba+ili*25,uik,25*sizeof(MatScalar));CHKERRQ(ierr); 1483b59abe41SHong Zhang 1484b59abe41SHong Zhang /* add multiple of row i to k-th row ... */ 1485b59abe41SHong Zhang jmin = ili + 1; jmax = bi[i+1]; 1486b59abe41SHong Zhang if (jmin < jmax){ 1487b59abe41SHong Zhang for (j=jmin; j<jmax; j++) { 1488b59abe41SHong Zhang /* rtmp += -U(i,k)^T * U_bar(i,j) */ 1489b59abe41SHong Zhang rtmp_ptr = rtmp + bj[j]*25; 1490b59abe41SHong Zhang u = ba + j*25; 1491936bb232SHong Zhang rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4]; 1492936bb232SHong Zhang rtmp_ptr[1] += uik[5]*u[0] + uik[6]*u[1] + uik[7]*u[2] + uik[8]*u[3] + uik[9]*u[4]; 1493936bb232SHong Zhang rtmp_ptr[2] += uik[10]*u[0]+ uik[11]*u[1]+ uik[12]*u[2]+ uik[13]*u[3]+ uik[14]*u[4]; 1494936bb232SHong Zhang rtmp_ptr[3] += uik[15]*u[0]+ uik[16]*u[1]+ uik[17]*u[2]+ uik[18]*u[3]+ uik[19]*u[4]; 1495936bb232SHong Zhang rtmp_ptr[4] += uik[20]*u[0]+ uik[21]*u[1]+ uik[22]*u[2]+ uik[23]*u[3]+ uik[24]*u[4]; 1496b59abe41SHong Zhang 1497936bb232SHong Zhang rtmp_ptr[5] += uik[0]*u[5] + uik[1]*u[6] + uik[2]*u[7] + uik[3]*u[8] + uik[4]*u[9]; 1498936bb232SHong Zhang rtmp_ptr[6] += uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]; 1499936bb232SHong Zhang rtmp_ptr[7] += uik[10]*u[5]+ uik[11]*u[6]+ uik[12]*u[7]+ uik[13]*u[8]+ uik[14]*u[9]; 1500936bb232SHong Zhang rtmp_ptr[8] += uik[15]*u[5]+ uik[16]*u[6]+ uik[17]*u[7]+ uik[18]*u[8]+ uik[19]*u[9]; 1501936bb232SHong Zhang rtmp_ptr[9] += uik[20]*u[5]+ uik[21]*u[6]+ uik[22]*u[7]+ uik[23]*u[8]+ uik[24]*u[9]; 1502b59abe41SHong Zhang 1503936bb232SHong Zhang rtmp_ptr[10] += uik[0]*u[10] + uik[1]*u[11] + uik[2]*u[12] + uik[3]*u[13] + uik[4]*u[14]; 1504936bb232SHong Zhang rtmp_ptr[11] += uik[5]*u[10] + uik[6]*u[11] + uik[7]*u[12] + uik[8]*u[13] + uik[9]*u[14]; 1505936bb232SHong Zhang rtmp_ptr[12] += uik[10]*u[10]+ uik[11]*u[11]+ uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]; 1506936bb232SHong Zhang rtmp_ptr[13] += uik[15]*u[10]+ uik[16]*u[11]+ uik[17]*u[12]+ uik[18]*u[13]+ uik[19]*u[14]; 1507936bb232SHong Zhang rtmp_ptr[14] += uik[20]*u[10]+ uik[21]*u[11]+ uik[22]*u[12]+ uik[23]*u[13]+ uik[24]*u[14]; 1508b59abe41SHong Zhang 1509936bb232SHong Zhang rtmp_ptr[15] += uik[0]*u[15] + uik[1]*u[16] + uik[2]*u[17] + uik[3]*u[18] + uik[4]*u[19]; 1510936bb232SHong Zhang rtmp_ptr[16] += uik[5]*u[15] + uik[6]*u[16] + uik[7]*u[17] + uik[8]*u[18] + uik[9]*u[19]; 1511936bb232SHong Zhang rtmp_ptr[17] += uik[10]*u[15]+ uik[11]*u[16]+ uik[12]*u[17]+ uik[13]*u[18]+ uik[14]*u[19]; 1512936bb232SHong Zhang rtmp_ptr[18] += uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]+ uik[18]*u[18]+ uik[19]*u[19]; 1513936bb232SHong Zhang rtmp_ptr[19] += uik[20]*u[15]+ uik[21]*u[16]+ uik[22]*u[17]+ uik[23]*u[18]+ uik[24]*u[19]; 1514936bb232SHong Zhang 1515936bb232SHong Zhang rtmp_ptr[20] += uik[0]*u[20] + uik[1]*u[21] + uik[2]*u[22] + uik[3]*u[23] + uik[4]*u[24]; 1516936bb232SHong Zhang rtmp_ptr[21] += uik[5]*u[20] + uik[6]*u[21] + uik[7]*u[22] + uik[8]*u[23] + uik[9]*u[24]; 1517936bb232SHong Zhang rtmp_ptr[22] += uik[10]*u[20]+ uik[11]*u[21]+ uik[12]*u[22]+ uik[13]*u[23]+ uik[14]*u[24]; 1518936bb232SHong Zhang rtmp_ptr[23] += uik[15]*u[20]+ uik[16]*u[21]+ uik[17]*u[22]+ uik[18]*u[23]+ uik[19]*u[24]; 15194f078a5fSHong Zhang rtmp_ptr[24] += uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]+ uik[24]*u[24]; 1520b59abe41SHong Zhang } 1521b59abe41SHong Zhang 1522b59abe41SHong Zhang /* ... add i to row list for next nonzero entry */ 1523b59abe41SHong Zhang il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 1524b59abe41SHong Zhang j = bj[jmin]; 1525b59abe41SHong Zhang jl[i] = jl[j]; jl[j] = i; /* update jl */ 1526b59abe41SHong Zhang } 1527b59abe41SHong Zhang i = nexti; 1528b59abe41SHong Zhang } 1529b59abe41SHong Zhang 1530b59abe41SHong Zhang /* save nonzero entries in k-th row of U ... */ 1531b59abe41SHong Zhang 1532b59abe41SHong Zhang /* invert diagonal block */ 1533b59abe41SHong Zhang d = ba+k*25; 1534b59abe41SHong Zhang ierr = PetscMemcpy(d,dk,25*sizeof(MatScalar));CHKERRQ(ierr); 1535b59abe41SHong Zhang ierr = Kernel_A_gets_inverse_A_5(d);CHKERRQ(ierr); 1536b59abe41SHong Zhang 1537b59abe41SHong Zhang jmin = bi[k]; jmax = bi[k+1]; 1538b59abe41SHong Zhang if (jmin < jmax) { 1539b59abe41SHong Zhang for (j=jmin; j<jmax; j++){ 1540b59abe41SHong Zhang vj = bj[j]; /* block col. index of U */ 1541b59abe41SHong Zhang u = ba + j*25; 1542b59abe41SHong Zhang rtmp_ptr = rtmp + vj*25; 1543b59abe41SHong Zhang for (k1=0; k1<25; k1++){ 1544b59abe41SHong Zhang *u++ = *rtmp_ptr; 1545b59abe41SHong Zhang *rtmp_ptr++ = 0.0; 1546b59abe41SHong Zhang } 1547b59abe41SHong Zhang } 1548b59abe41SHong Zhang 1549b59abe41SHong Zhang /* ... add k to row list for first nonzero entry in k-th row */ 1550b59abe41SHong Zhang il[k] = jmin; 1551b59abe41SHong Zhang i = bj[jmin]; 1552b59abe41SHong Zhang jl[k] = jl[i]; jl[i] = k; 1553b59abe41SHong Zhang } 1554b59abe41SHong Zhang } 1555b59abe41SHong Zhang 1556b59abe41SHong Zhang ierr = PetscFree(rtmp);CHKERRQ(ierr); 1557b59abe41SHong Zhang ierr = PetscFree(il);CHKERRQ(ierr); 1558b59abe41SHong Zhang ierr = PetscFree(jl);CHKERRQ(ierr); 1559b59abe41SHong Zhang ierr = PetscFree(dk);CHKERRQ(ierr); 1560b59abe41SHong Zhang ierr = PetscFree(uik);CHKERRQ(ierr); 1561b59abe41SHong Zhang if (a->permute){ 1562b59abe41SHong Zhang ierr = PetscFree(aa);CHKERRQ(ierr); 1563b59abe41SHong Zhang } 1564b59abe41SHong Zhang 1565b59abe41SHong Zhang ierr = ISRestoreIndices(perm,&perm_ptr);CHKERRQ(ierr); 1566b59abe41SHong Zhang C->factor = FACTOR_CHOLESKY; 1567b59abe41SHong Zhang C->assembled = PETSC_TRUE; 1568b59abe41SHong Zhang C->preallocated = PETSC_TRUE; 1569b59abe41SHong Zhang PLogFlops(1.3333*125*b->mbs); /* from inverting diagonal blocks */ 1570b59abe41SHong Zhang PetscFunctionReturn(0); 1571b59abe41SHong Zhang } 157249b5e25fSSatish Balay 157349b5e25fSSatish Balay /* 157449b5e25fSSatish Balay Version for when blocks are 5 by 5 Using natural ordering 157549b5e25fSSatish Balay */ 157649b5e25fSSatish Balay #undef __FUNC__ 15776f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering" 15786f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering(Mat A,Mat *B) 157949b5e25fSSatish Balay { 158049b5e25fSSatish Balay Mat C = *B; 158149b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 158249b5e25fSSatish Balay int ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 158349b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 158449b5e25fSSatish Balay int *diag_offset = b->diag,*ai=a->i,*aj=a->j,*pj; 158549b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 158649b5e25fSSatish Balay MatScalar x1,x2,x3,x4,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15; 158749b5e25fSSatish Balay MatScalar x16,x17,x18,x19,x20,x21,x22,x23,x24,x25; 158849b5e25fSSatish Balay MatScalar p1,p2,p3,p4,p5,p6,p7,p8,p9,p10,p11,p12,p13,p14,p15; 158949b5e25fSSatish Balay MatScalar p16,p17,p18,p19,p20,p21,p22,p23,p24,p25; 159049b5e25fSSatish Balay MatScalar m1,m2,m3,m4,m5,m6,m7,m8,m9,m10,m11,m12,m13,m14,m15; 159149b5e25fSSatish Balay MatScalar m16,m17,m18,m19,m20,m21,m22,m23,m24,m25; 159249b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 159349b5e25fSSatish Balay 159449b5e25fSSatish Balay PetscFunctionBegin; 159549b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(25*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 159649b5e25fSSatish Balay for (i=0; i<n; i++) { 159749b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 159849b5e25fSSatish Balay ajtmp = bj + bi[i]; 159949b5e25fSSatish Balay for (j=0; j<nz; j++) { 160049b5e25fSSatish Balay x = rtmp+25*ajtmp[j]; 160149b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = x[4] = x[5] = x[6] = x[7] = x[8] = x[9] = 0.0; 160249b5e25fSSatish Balay x[10] = x[11] = x[12] = x[13] = x[14] = x[15] = 0.0; 160349b5e25fSSatish Balay x[16] = x[17] = x[18] = x[19] = x[20] = x[21] = x[22] = x[23] = x[24] = 0.0; 160449b5e25fSSatish Balay } 160549b5e25fSSatish Balay /* load in initial (unfactored row) */ 160649b5e25fSSatish Balay nz = ai[i+1] - ai[i]; 160749b5e25fSSatish Balay ajtmpold = aj + ai[i]; 160849b5e25fSSatish Balay v = aa + 25*ai[i]; 160949b5e25fSSatish Balay for (j=0; j<nz; j++) { 161049b5e25fSSatish Balay x = rtmp+25*ajtmpold[j]; 161149b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 161249b5e25fSSatish Balay x[4] = v[4]; x[5] = v[5]; x[6] = v[6]; x[7] = v[7]; x[8] = v[8]; 161349b5e25fSSatish Balay x[9] = v[9]; x[10] = v[10]; x[11] = v[11]; x[12] = v[12]; x[13] = v[13]; 161449b5e25fSSatish Balay x[14] = v[14]; x[15] = v[15]; x[16] = v[16]; x[17] = v[17]; x[18] = v[18]; 161549b5e25fSSatish Balay x[19] = v[19]; x[20] = v[20]; x[21] = v[21]; x[22] = v[22]; x[23] = v[23]; 161649b5e25fSSatish Balay x[24] = v[24]; 161749b5e25fSSatish Balay v += 25; 161849b5e25fSSatish Balay } 161949b5e25fSSatish Balay row = *ajtmp++; 162049b5e25fSSatish Balay while (row < i) { 162149b5e25fSSatish Balay pc = rtmp + 25*row; 162249b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 162349b5e25fSSatish Balay p5 = pc[4]; p6 = pc[5]; p7 = pc[6]; p8 = pc[7]; p9 = pc[8]; 162449b5e25fSSatish Balay p10 = pc[9]; p11 = pc[10]; p12 = pc[11]; p13 = pc[12]; p14 = pc[13]; 162549b5e25fSSatish Balay p15 = pc[14]; p16 = pc[15]; p17 = pc[16]; p18 = pc[17]; 162649b5e25fSSatish Balay p19 = pc[18]; p20 = pc[19]; p21 = pc[20]; p22 = pc[21]; p23 = pc[22]; 162749b5e25fSSatish Balay p24 = pc[23]; p25 = pc[24]; 162849b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0 || p5 != 0.0 || 162949b5e25fSSatish Balay p6 != 0.0 || p7 != 0.0 || p8 != 0.0 || p9 != 0.0 || p10 != 0.0 || 163049b5e25fSSatish Balay p11 != 0.0 || p12 != 0.0 || p13 != 0.0 || p14 != 0.0 || p15 != 0.0 163149b5e25fSSatish Balay || p16 != 0.0 || p17 != 0.0 || p18 != 0.0 || p19 != 0.0 || p20 != 0.0 163249b5e25fSSatish Balay || p21 != 0.0 || p22 != 0.0 || p23 != 0.0 || p24 != 0.0 || p25 != 0.0) { 163349b5e25fSSatish Balay pv = ba + 25*diag_offset[row]; 163449b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 163549b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 163649b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; x9 = pv[8]; 163749b5e25fSSatish Balay x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; x13 = pv[12]; x14 = pv[13]; 163849b5e25fSSatish Balay x15 = pv[14]; x16 = pv[15]; x17 = pv[16]; x18 = pv[17]; x19 = pv[18]; 163949b5e25fSSatish Balay x20 = pv[19]; x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; x24 = pv[23]; 164049b5e25fSSatish Balay x25 = pv[24]; 164149b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p6*x2 + p11*x3 + p16*x4 + p21*x5; 164249b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p7*x2 + p12*x3 + p17*x4 + p22*x5; 164349b5e25fSSatish Balay pc[2] = m3 = p3*x1 + p8*x2 + p13*x3 + p18*x4 + p23*x5; 164449b5e25fSSatish Balay pc[3] = m4 = p4*x1 + p9*x2 + p14*x3 + p19*x4 + p24*x5; 164549b5e25fSSatish Balay pc[4] = m5 = p5*x1 + p10*x2 + p15*x3 + p20*x4 + p25*x5; 164649b5e25fSSatish Balay 164749b5e25fSSatish Balay pc[5] = m6 = p1*x6 + p6*x7 + p11*x8 + p16*x9 + p21*x10; 164849b5e25fSSatish Balay pc[6] = m7 = p2*x6 + p7*x7 + p12*x8 + p17*x9 + p22*x10; 164949b5e25fSSatish Balay pc[7] = m8 = p3*x6 + p8*x7 + p13*x8 + p18*x9 + p23*x10; 165049b5e25fSSatish Balay pc[8] = m9 = p4*x6 + p9*x7 + p14*x8 + p19*x9 + p24*x10; 165149b5e25fSSatish Balay pc[9] = m10 = p5*x6 + p10*x7 + p15*x8 + p20*x9 + p25*x10; 165249b5e25fSSatish Balay 165349b5e25fSSatish Balay pc[10] = m11 = p1*x11 + p6*x12 + p11*x13 + p16*x14 + p21*x15; 165449b5e25fSSatish Balay pc[11] = m12 = p2*x11 + p7*x12 + p12*x13 + p17*x14 + p22*x15; 165549b5e25fSSatish Balay pc[12] = m13 = p3*x11 + p8*x12 + p13*x13 + p18*x14 + p23*x15; 165649b5e25fSSatish Balay pc[13] = m14 = p4*x11 + p9*x12 + p14*x13 + p19*x14 + p24*x15; 165749b5e25fSSatish Balay pc[14] = m15 = p5*x11 + p10*x12 + p15*x13 + p20*x14 + p25*x15; 165849b5e25fSSatish Balay 165949b5e25fSSatish Balay pc[15] = m16 = p1*x16 + p6*x17 + p11*x18 + p16*x19 + p21*x20; 166049b5e25fSSatish Balay pc[16] = m17 = p2*x16 + p7*x17 + p12*x18 + p17*x19 + p22*x20; 166149b5e25fSSatish Balay pc[17] = m18 = p3*x16 + p8*x17 + p13*x18 + p18*x19 + p23*x20; 166249b5e25fSSatish Balay pc[18] = m19 = p4*x16 + p9*x17 + p14*x18 + p19*x19 + p24*x20; 166349b5e25fSSatish Balay pc[19] = m20 = p5*x16 + p10*x17 + p15*x18 + p20*x19 + p25*x20; 166449b5e25fSSatish Balay 166549b5e25fSSatish Balay pc[20] = m21 = p1*x21 + p6*x22 + p11*x23 + p16*x24 + p21*x25; 166649b5e25fSSatish Balay pc[21] = m22 = p2*x21 + p7*x22 + p12*x23 + p17*x24 + p22*x25; 166749b5e25fSSatish Balay pc[22] = m23 = p3*x21 + p8*x22 + p13*x23 + p18*x24 + p23*x25; 166849b5e25fSSatish Balay pc[23] = m24 = p4*x21 + p9*x22 + p14*x23 + p19*x24 + p24*x25; 166949b5e25fSSatish Balay pc[24] = m25 = p5*x21 + p10*x22 + p15*x23 + p20*x24 + p25*x25; 167049b5e25fSSatish Balay 167149b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 167249b5e25fSSatish Balay pv += 25; 167349b5e25fSSatish Balay for (j=0; j<nz; j++) { 167449b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 167549b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; x9 = pv[8]; 167649b5e25fSSatish Balay x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; x13 = pv[12]; 167749b5e25fSSatish Balay x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; x17 = pv[16]; x18 = pv[17]; 167849b5e25fSSatish Balay x19 = pv[18]; x20 = pv[19]; x21 = pv[20]; x22 = pv[21]; x23 = pv[22]; 167949b5e25fSSatish Balay x24 = pv[23]; x25 = pv[24]; 168049b5e25fSSatish Balay x = rtmp + 25*pj[j]; 168149b5e25fSSatish Balay x[0] -= m1*x1 + m6*x2 + m11*x3 + m16*x4 + m21*x5; 168249b5e25fSSatish Balay x[1] -= m2*x1 + m7*x2 + m12*x3 + m17*x4 + m22*x5; 168349b5e25fSSatish Balay x[2] -= m3*x1 + m8*x2 + m13*x3 + m18*x4 + m23*x5; 168449b5e25fSSatish Balay x[3] -= m4*x1 + m9*x2 + m14*x3 + m19*x4 + m24*x5; 168549b5e25fSSatish Balay x[4] -= m5*x1 + m10*x2 + m15*x3 + m20*x4 + m25*x5; 168649b5e25fSSatish Balay 168749b5e25fSSatish Balay x[5] -= m1*x6 + m6*x7 + m11*x8 + m16*x9 + m21*x10; 168849b5e25fSSatish Balay x[6] -= m2*x6 + m7*x7 + m12*x8 + m17*x9 + m22*x10; 168949b5e25fSSatish Balay x[7] -= m3*x6 + m8*x7 + m13*x8 + m18*x9 + m23*x10; 169049b5e25fSSatish Balay x[8] -= m4*x6 + m9*x7 + m14*x8 + m19*x9 + m24*x10; 169149b5e25fSSatish Balay x[9] -= m5*x6 + m10*x7 + m15*x8 + m20*x9 + m25*x10; 169249b5e25fSSatish Balay 169349b5e25fSSatish Balay x[10] -= m1*x11 + m6*x12 + m11*x13 + m16*x14 + m21*x15; 169449b5e25fSSatish Balay x[11] -= m2*x11 + m7*x12 + m12*x13 + m17*x14 + m22*x15; 169549b5e25fSSatish Balay x[12] -= m3*x11 + m8*x12 + m13*x13 + m18*x14 + m23*x15; 169649b5e25fSSatish Balay x[13] -= m4*x11 + m9*x12 + m14*x13 + m19*x14 + m24*x15; 169749b5e25fSSatish Balay x[14] -= m5*x11 + m10*x12 + m15*x13 + m20*x14 + m25*x15; 169849b5e25fSSatish Balay 169949b5e25fSSatish Balay x[15] -= m1*x16 + m6*x17 + m11*x18 + m16*x19 + m21*x20; 170049b5e25fSSatish Balay x[16] -= m2*x16 + m7*x17 + m12*x18 + m17*x19 + m22*x20; 170149b5e25fSSatish Balay x[17] -= m3*x16 + m8*x17 + m13*x18 + m18*x19 + m23*x20; 170249b5e25fSSatish Balay x[18] -= m4*x16 + m9*x17 + m14*x18 + m19*x19 + m24*x20; 170349b5e25fSSatish Balay x[19] -= m5*x16 + m10*x17 + m15*x18 + m20*x19 + m25*x20; 170449b5e25fSSatish Balay 170549b5e25fSSatish Balay x[20] -= m1*x21 + m6*x22 + m11*x23 + m16*x24 + m21*x25; 170649b5e25fSSatish Balay x[21] -= m2*x21 + m7*x22 + m12*x23 + m17*x24 + m22*x25; 170749b5e25fSSatish Balay x[22] -= m3*x21 + m8*x22 + m13*x23 + m18*x24 + m23*x25; 170849b5e25fSSatish Balay x[23] -= m4*x21 + m9*x22 + m14*x23 + m19*x24 + m24*x25; 170949b5e25fSSatish Balay x[24] -= m5*x21 + m10*x22 + m15*x23 + m20*x24 + m25*x25; 171049b5e25fSSatish Balay pv += 25; 171149b5e25fSSatish Balay } 171249b5e25fSSatish Balay PLogFlops(250*nz+225); 171349b5e25fSSatish Balay } 171449b5e25fSSatish Balay row = *ajtmp++; 171549b5e25fSSatish Balay } 171649b5e25fSSatish Balay /* finished row so stick it into b->a */ 171749b5e25fSSatish Balay pv = ba + 25*bi[i]; 171849b5e25fSSatish Balay pj = bj + bi[i]; 171949b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 172049b5e25fSSatish Balay for (j=0; j<nz; j++) { 172149b5e25fSSatish Balay x = rtmp+25*pj[j]; 172249b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 172349b5e25fSSatish Balay pv[4] = x[4]; pv[5] = x[5]; pv[6] = x[6]; pv[7] = x[7]; pv[8] = x[8]; 172449b5e25fSSatish Balay pv[9] = x[9]; pv[10] = x[10]; pv[11] = x[11]; pv[12] = x[12]; 172549b5e25fSSatish Balay pv[13] = x[13]; pv[14] = x[14]; pv[15] = x[15]; pv[16] = x[16]; pv[17] = x[17]; 172649b5e25fSSatish Balay pv[18] = x[18]; pv[19] = x[19]; pv[20] = x[20]; pv[21] = x[21]; pv[22] = x[22]; 172749b5e25fSSatish Balay pv[23] = x[23]; pv[24] = x[24]; 172849b5e25fSSatish Balay pv += 25; 172949b5e25fSSatish Balay } 173049b5e25fSSatish Balay /* invert diagonal block */ 173149b5e25fSSatish Balay w = ba + 25*diag_offset[i]; 173249b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_5(w);CHKERRQ(ierr); 173349b5e25fSSatish Balay } 173449b5e25fSSatish Balay 173549b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 173649b5e25fSSatish Balay C->factor = FACTOR_LU; 173749b5e25fSSatish Balay C->assembled = PETSC_TRUE; 173849b5e25fSSatish Balay PLogFlops(1.3333*125*b->mbs); /* from inverting diagonal blocks */ 173949b5e25fSSatish Balay PetscFunctionReturn(0); 174049b5e25fSSatish Balay } 174149b5e25fSSatish Balay 174249b5e25fSSatish Balay /* 174349b5e25fSSatish Balay Version for when blocks are 4 by 4 Using natural ordering 174449b5e25fSSatish Balay */ 174549b5e25fSSatish Balay #undef __FUNC__ 17466f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering" 17476f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering(Mat A,Mat *B) 174849b5e25fSSatish Balay { 174949b5e25fSSatish Balay Mat C = *B; 175049b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 175149b5e25fSSatish Balay int ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 175249b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 175349b5e25fSSatish Balay int *diag_offset = b->diag,*ai=a->i,*aj=a->j,*pj; 175449b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 175549b5e25fSSatish Balay MatScalar p1,p2,p3,p4,m1,m2,m3,m4,m5,m6,m7,m8,m9,x1,x2,x3,x4; 175649b5e25fSSatish Balay MatScalar p5,p6,p7,p8,p9,x5,x6,x7,x8,x9,x10,x11,x12,x13,x14,x15,x16; 175749b5e25fSSatish Balay MatScalar p10,p11,p12,p13,p14,p15,p16,m10,m11,m12; 175849b5e25fSSatish Balay MatScalar m13,m14,m15,m16; 175949b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 176049b5e25fSSatish Balay 176149b5e25fSSatish Balay PetscFunctionBegin; 176249b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(16*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 176349b5e25fSSatish Balay 176449b5e25fSSatish Balay for (i=0; i<n; i++) { 176549b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 176649b5e25fSSatish Balay ajtmp = bj + bi[i]; 176749b5e25fSSatish Balay for (j=0; j<nz; j++) { 176849b5e25fSSatish Balay x = rtmp+16*ajtmp[j]; 176949b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = x[4] = x[5] = x[6] = x[7] = x[8] = x[9] = 0.0; 177049b5e25fSSatish Balay x[10] = x[11] = x[12] = x[13] = x[14] = x[15] = 0.0; 177149b5e25fSSatish Balay } 177249b5e25fSSatish Balay /* load in initial (unfactored row) */ 177349b5e25fSSatish Balay nz = ai[i+1] - ai[i]; 177449b5e25fSSatish Balay ajtmpold = aj + ai[i]; 177549b5e25fSSatish Balay v = aa + 16*ai[i]; 177649b5e25fSSatish Balay for (j=0; j<nz; j++) { 177749b5e25fSSatish Balay x = rtmp+16*ajtmpold[j]; 177849b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 177949b5e25fSSatish Balay x[4] = v[4]; x[5] = v[5]; x[6] = v[6]; x[7] = v[7]; x[8] = v[8]; 178049b5e25fSSatish Balay x[9] = v[9]; x[10] = v[10]; x[11] = v[11]; x[12] = v[12]; x[13] = v[13]; 178149b5e25fSSatish Balay x[14] = v[14]; x[15] = v[15]; 178249b5e25fSSatish Balay v += 16; 178349b5e25fSSatish Balay } 178449b5e25fSSatish Balay row = *ajtmp++; 178549b5e25fSSatish Balay while (row < i) { 178649b5e25fSSatish Balay pc = rtmp + 16*row; 178749b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 178849b5e25fSSatish Balay p5 = pc[4]; p6 = pc[5]; p7 = pc[6]; p8 = pc[7]; p9 = pc[8]; 178949b5e25fSSatish Balay p10 = pc[9]; p11 = pc[10]; p12 = pc[11]; p13 = pc[12]; p14 = pc[13]; 179049b5e25fSSatish Balay p15 = pc[14]; p16 = pc[15]; 179149b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0 || p5 != 0.0 || 179249b5e25fSSatish Balay p6 != 0.0 || p7 != 0.0 || p8 != 0.0 || p9 != 0.0 || p10 != 0.0 || 179349b5e25fSSatish Balay p11 != 0.0 || p12 != 0.0 || p13 != 0.0 || p14 != 0.0 || p15 != 0.0 179449b5e25fSSatish Balay || p16 != 0.0) { 179549b5e25fSSatish Balay pv = ba + 16*diag_offset[row]; 179649b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 179749b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 179849b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; x9 = pv[8]; 179949b5e25fSSatish Balay x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; x13 = pv[12]; x14 = pv[13]; 180049b5e25fSSatish Balay x15 = pv[14]; x16 = pv[15]; 180149b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p5*x2 + p9*x3 + p13*x4; 180249b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p6*x2 + p10*x3 + p14*x4; 180349b5e25fSSatish Balay pc[2] = m3 = p3*x1 + p7*x2 + p11*x3 + p15*x4; 180449b5e25fSSatish Balay pc[3] = m4 = p4*x1 + p8*x2 + p12*x3 + p16*x4; 180549b5e25fSSatish Balay 180649b5e25fSSatish Balay pc[4] = m5 = p1*x5 + p5*x6 + p9*x7 + p13*x8; 180749b5e25fSSatish Balay pc[5] = m6 = p2*x5 + p6*x6 + p10*x7 + p14*x8; 180849b5e25fSSatish Balay pc[6] = m7 = p3*x5 + p7*x6 + p11*x7 + p15*x8; 180949b5e25fSSatish Balay pc[7] = m8 = p4*x5 + p8*x6 + p12*x7 + p16*x8; 181049b5e25fSSatish Balay 181149b5e25fSSatish Balay pc[8] = m9 = p1*x9 + p5*x10 + p9*x11 + p13*x12; 181249b5e25fSSatish Balay pc[9] = m10 = p2*x9 + p6*x10 + p10*x11 + p14*x12; 181349b5e25fSSatish Balay pc[10] = m11 = p3*x9 + p7*x10 + p11*x11 + p15*x12; 181449b5e25fSSatish Balay pc[11] = m12 = p4*x9 + p8*x10 + p12*x11 + p16*x12; 181549b5e25fSSatish Balay 181649b5e25fSSatish Balay pc[12] = m13 = p1*x13 + p5*x14 + p9*x15 + p13*x16; 181749b5e25fSSatish Balay pc[13] = m14 = p2*x13 + p6*x14 + p10*x15 + p14*x16; 181849b5e25fSSatish Balay pc[14] = m15 = p3*x13 + p7*x14 + p11*x15 + p15*x16; 181949b5e25fSSatish Balay pc[15] = m16 = p4*x13 + p8*x14 + p12*x15 + p16*x16; 182049b5e25fSSatish Balay 182149b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 182249b5e25fSSatish Balay pv += 16; 182349b5e25fSSatish Balay for (j=0; j<nz; j++) { 182449b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 182549b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; x9 = pv[8]; 182649b5e25fSSatish Balay x10 = pv[9]; x11 = pv[10]; x12 = pv[11]; x13 = pv[12]; 182749b5e25fSSatish Balay x14 = pv[13]; x15 = pv[14]; x16 = pv[15]; 182849b5e25fSSatish Balay x = rtmp + 16*pj[j]; 182949b5e25fSSatish Balay x[0] -= m1*x1 + m5*x2 + m9*x3 + m13*x4; 183049b5e25fSSatish Balay x[1] -= m2*x1 + m6*x2 + m10*x3 + m14*x4; 183149b5e25fSSatish Balay x[2] -= m3*x1 + m7*x2 + m11*x3 + m15*x4; 183249b5e25fSSatish Balay x[3] -= m4*x1 + m8*x2 + m12*x3 + m16*x4; 183349b5e25fSSatish Balay 183449b5e25fSSatish Balay x[4] -= m1*x5 + m5*x6 + m9*x7 + m13*x8; 183549b5e25fSSatish Balay x[5] -= m2*x5 + m6*x6 + m10*x7 + m14*x8; 183649b5e25fSSatish Balay x[6] -= m3*x5 + m7*x6 + m11*x7 + m15*x8; 183749b5e25fSSatish Balay x[7] -= m4*x5 + m8*x6 + m12*x7 + m16*x8; 183849b5e25fSSatish Balay 183949b5e25fSSatish Balay x[8] -= m1*x9 + m5*x10 + m9*x11 + m13*x12; 184049b5e25fSSatish Balay x[9] -= m2*x9 + m6*x10 + m10*x11 + m14*x12; 184149b5e25fSSatish Balay x[10] -= m3*x9 + m7*x10 + m11*x11 + m15*x12; 184249b5e25fSSatish Balay x[11] -= m4*x9 + m8*x10 + m12*x11 + m16*x12; 184349b5e25fSSatish Balay 184449b5e25fSSatish Balay x[12] -= m1*x13 + m5*x14 + m9*x15 + m13*x16; 184549b5e25fSSatish Balay x[13] -= m2*x13 + m6*x14 + m10*x15 + m14*x16; 184649b5e25fSSatish Balay x[14] -= m3*x13 + m7*x14 + m11*x15 + m15*x16; 184749b5e25fSSatish Balay x[15] -= m4*x13 + m8*x14 + m12*x15 + m16*x16; 184849b5e25fSSatish Balay 184949b5e25fSSatish Balay pv += 16; 185049b5e25fSSatish Balay } 185149b5e25fSSatish Balay PLogFlops(128*nz+112); 185249b5e25fSSatish Balay } 185349b5e25fSSatish Balay row = *ajtmp++; 185449b5e25fSSatish Balay } 185549b5e25fSSatish Balay /* finished row so stick it into b->a */ 185649b5e25fSSatish Balay pv = ba + 16*bi[i]; 185749b5e25fSSatish Balay pj = bj + bi[i]; 185849b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 185949b5e25fSSatish Balay for (j=0; j<nz; j++) { 186049b5e25fSSatish Balay x = rtmp+16*pj[j]; 186149b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 186249b5e25fSSatish Balay pv[4] = x[4]; pv[5] = x[5]; pv[6] = x[6]; pv[7] = x[7]; pv[8] = x[8]; 186349b5e25fSSatish Balay pv[9] = x[9]; pv[10] = x[10]; pv[11] = x[11]; pv[12] = x[12]; 186449b5e25fSSatish Balay pv[13] = x[13]; pv[14] = x[14]; pv[15] = x[15]; 186549b5e25fSSatish Balay pv += 16; 186649b5e25fSSatish Balay } 186749b5e25fSSatish Balay /* invert diagonal block */ 186849b5e25fSSatish Balay w = ba + 16*diag_offset[i]; 186949b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_4(w);CHKERRQ(ierr); 187049b5e25fSSatish Balay } 187149b5e25fSSatish Balay 187249b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 187349b5e25fSSatish Balay C->factor = FACTOR_LU; 187449b5e25fSSatish Balay C->assembled = PETSC_TRUE; 18757a05c331SHong Zhang C->preallocated = PETSC_TRUE; 187649b5e25fSSatish Balay PLogFlops(1.3333*64*b->mbs); /* from inverting diagonal blocks */ 187749b5e25fSSatish Balay PetscFunctionReturn(0); 187849b5e25fSSatish Balay } 187949b5e25fSSatish Balay 1880effa298cSHong Zhang /* Version for when blocks are 4 by 4 */ 1881effa298cSHong Zhang #undef __FUNC__ 1882effa298cSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_4" 1883effa298cSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_4(Mat A,Mat *B) 1884effa298cSHong Zhang { 1885effa298cSHong Zhang Mat C = *B; 1886effa298cSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 1887effa298cSHong Zhang IS perm = b->row; 1888effa298cSHong Zhang int *perm_ptr,ierr,i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 1889effa298cSHong Zhang int *ai,*aj,*a2anew,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili; 1890effa298cSHong Zhang MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 1891effa298cSHong Zhang MatScalar *u,*diag,*rtmp,*rtmp_ptr; 1892effa298cSHong Zhang 1893effa298cSHong Zhang PetscFunctionBegin; 1894effa298cSHong Zhang /* initialization */ 1895effa298cSHong Zhang rtmp = (MatScalar*)PetscMalloc(16*mbs*sizeof(MatScalar));CHKPTRQ(rtmp); 1896effa298cSHong Zhang ierr = PetscMemzero(rtmp,16*mbs*sizeof(MatScalar));CHKERRQ(ierr); 1897effa298cSHong Zhang il = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(il); 1898effa298cSHong Zhang jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 1899effa298cSHong Zhang for (i=0; i<mbs; i++) { 1900effa298cSHong Zhang jl[i] = mbs; il[0] = 0; 1901effa298cSHong Zhang } 1902effa298cSHong Zhang dk = (MatScalar*)PetscMalloc(16*sizeof(MatScalar));CHKPTRQ(dk); 1903effa298cSHong Zhang uik = (MatScalar*)PetscMalloc(16*sizeof(MatScalar));CHKPTRQ(uik); 1904effa298cSHong Zhang ierr = ISGetIndices(perm,&perm_ptr);CHKERRQ(ierr); 1905effa298cSHong Zhang 1906effa298cSHong Zhang /* check permutation */ 1907effa298cSHong Zhang if (!a->permute){ 1908effa298cSHong Zhang ai = a->i; aj = a->j; aa = a->a; 1909effa298cSHong Zhang } else { 1910effa298cSHong Zhang ai = a->inew; aj = a->jnew; 1911effa298cSHong Zhang aa = (MatScalar*)PetscMalloc(16*ai[mbs]*sizeof(MatScalar));CHKPTRQ(aa); 1912effa298cSHong Zhang ierr = PetscMemcpy(aa,a->a,16*ai[mbs]*sizeof(MatScalar));CHKERRQ(ierr); 1913effa298cSHong Zhang a2anew = (int*)PetscMalloc(ai[mbs]*sizeof(int));CHKPTRQ(a2anew); 1914effa298cSHong Zhang ierr= PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(int));CHKERRQ(ierr); 1915effa298cSHong Zhang 1916effa298cSHong Zhang for (i=0; i<mbs; i++){ 1917effa298cSHong Zhang jmin = ai[i]; jmax = ai[i+1]; 1918effa298cSHong Zhang for (j=jmin; j<jmax; j++){ 1919effa298cSHong Zhang while (a2anew[j] != j){ 1920effa298cSHong Zhang k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k; 1921effa298cSHong Zhang for (k1=0; k1<16; k1++){ 1922effa298cSHong Zhang dk[k1] = aa[k*16+k1]; 1923effa298cSHong Zhang aa[k*16+k1] = aa[j*16+k1]; 1924effa298cSHong Zhang aa[j*16+k1] = dk[k1]; 1925effa298cSHong Zhang } 1926effa298cSHong Zhang } 1927effa298cSHong Zhang /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */ 1928effa298cSHong Zhang if (i > aj[j]){ 1929effa298cSHong Zhang /* printf("change orientation, row: %d, col: %d\n",i,aj[j]); */ 1930effa298cSHong Zhang ap = aa + j*16; /* ptr to the beginning of j-th block of aa */ 1931effa298cSHong Zhang for (k=0; k<16; k++) dk[k] = ap[k]; /* dk <- j-th block of aa */ 1932effa298cSHong Zhang for (k=0; k<4; k++){ /* j-th block of aa <- dk^T */ 1933effa298cSHong Zhang for (k1=0; k1<4; k1++) *ap++ = dk[k + 4*k1]; 1934effa298cSHong Zhang } 1935effa298cSHong Zhang } 1936effa298cSHong Zhang } 1937effa298cSHong Zhang } 1938effa298cSHong Zhang ierr = PetscFree(a2anew);CHKERRA(ierr); 1939effa298cSHong Zhang } 1940effa298cSHong Zhang 1941effa298cSHong Zhang /* for each row k */ 1942effa298cSHong Zhang for (k = 0; k<mbs; k++){ 1943effa298cSHong Zhang 1944effa298cSHong Zhang /*initialize k-th row with elements nonzero in row perm(k) of A */ 1945effa298cSHong Zhang jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1]; 1946effa298cSHong Zhang if (jmin < jmax) { 1947effa298cSHong Zhang ap = aa + jmin*16; 1948effa298cSHong Zhang for (j = jmin; j < jmax; j++){ 1949effa298cSHong Zhang vj = perm_ptr[aj[j]]; /* block col. index */ 1950effa298cSHong Zhang rtmp_ptr = rtmp + vj*16; 1951effa298cSHong Zhang for (i=0; i<16; i++) *rtmp_ptr++ = *ap++; 1952effa298cSHong Zhang } 1953effa298cSHong Zhang } 1954effa298cSHong Zhang 1955effa298cSHong Zhang /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 1956effa298cSHong Zhang ierr = PetscMemcpy(dk,rtmp+k*16,16*sizeof(MatScalar));CHKERRQ(ierr); 1957effa298cSHong Zhang i = jl[k]; /* first row to be added to k_th row */ 1958effa298cSHong Zhang 1959effa298cSHong Zhang while (i < mbs){ 1960effa298cSHong Zhang nexti = jl[i]; /* next row to be added to k_th row */ 1961effa298cSHong Zhang 1962effa298cSHong Zhang /* compute multiplier */ 1963effa298cSHong Zhang ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 1964effa298cSHong Zhang 1965effa298cSHong Zhang /* uik = -inv(Di)*U_bar(i,k) */ 1966effa298cSHong Zhang diag = ba + i*16; 1967effa298cSHong Zhang u = ba + ili*16; 1968effa298cSHong Zhang 1969effa298cSHong Zhang uik[0] = -(diag[0]*u[0] + diag[4]*u[1] + diag[8]*u[2] + diag[12]*u[3]); 1970effa298cSHong Zhang uik[1] = -(diag[1]*u[0] + diag[5]*u[1] + diag[9]*u[2] + diag[13]*u[3]); 1971effa298cSHong Zhang uik[2] = -(diag[2]*u[0] + diag[6]*u[1] + diag[10]*u[2]+ diag[14]*u[3]); 1972effa298cSHong Zhang uik[3] = -(diag[3]*u[0] + diag[7]*u[1] + diag[11]*u[2]+ diag[15]*u[3]); 1973effa298cSHong Zhang 1974effa298cSHong Zhang uik[4] = -(diag[0]*u[4] + diag[4]*u[5] + diag[8]*u[6] + diag[12]*u[7]); 1975effa298cSHong Zhang uik[5] = -(diag[1]*u[4] + diag[5]*u[5] + diag[9]*u[6] + diag[13]*u[7]); 1976effa298cSHong Zhang uik[6] = -(diag[2]*u[4] + diag[6]*u[5] + diag[10]*u[6]+ diag[14]*u[7]); 1977effa298cSHong Zhang uik[7] = -(diag[3]*u[4] + diag[7]*u[5] + diag[11]*u[6]+ diag[15]*u[7]); 1978effa298cSHong Zhang 1979effa298cSHong Zhang uik[8] = -(diag[0]*u[8] + diag[4]*u[9] + diag[8]*u[10] + diag[12]*u[11]); 1980effa298cSHong Zhang uik[9] = -(diag[1]*u[8] + diag[5]*u[9] + diag[9]*u[10] + diag[13]*u[11]); 1981effa298cSHong Zhang uik[10]= -(diag[2]*u[8] + diag[6]*u[9] + diag[10]*u[10]+ diag[14]*u[11]); 1982effa298cSHong Zhang uik[11]= -(diag[3]*u[8] + diag[7]*u[9] + diag[11]*u[10]+ diag[15]*u[11]); 1983effa298cSHong Zhang 1984effa298cSHong Zhang uik[12]= -(diag[0]*u[12] + diag[4]*u[13] + diag[8]*u[14] + diag[12]*u[15]); 1985effa298cSHong Zhang uik[13]= -(diag[1]*u[12] + diag[5]*u[13] + diag[9]*u[14] + diag[13]*u[15]); 1986effa298cSHong Zhang uik[14]= -(diag[2]*u[12] + diag[6]*u[13] + diag[10]*u[14]+ diag[14]*u[15]); 1987effa298cSHong Zhang uik[15]= -(diag[3]*u[12] + diag[7]*u[13] + diag[11]*u[14]+ diag[15]*u[15]); 1988effa298cSHong Zhang 1989effa298cSHong Zhang /* update D(k) += -U(i,k)^T * U_bar(i,k) */ 1990effa298cSHong Zhang dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3]; 1991effa298cSHong Zhang dk[1] += uik[4]*u[0] + uik[5]*u[1] + uik[6]*u[2] + uik[7]*u[3]; 1992effa298cSHong Zhang dk[2] += uik[8]*u[0] + uik[9]*u[1] + uik[10]*u[2]+ uik[11]*u[3]; 1993effa298cSHong Zhang dk[3] += uik[12]*u[0]+ uik[13]*u[1]+ uik[14]*u[2]+ uik[15]*u[3]; 1994effa298cSHong Zhang 1995effa298cSHong Zhang dk[4] += uik[0]*u[4] + uik[1]*u[5] + uik[2]*u[6] + uik[3]*u[7]; 1996effa298cSHong Zhang dk[5] += uik[4]*u[4] + uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7]; 1997effa298cSHong Zhang dk[6] += uik[8]*u[4] + uik[9]*u[5] + uik[10]*u[6]+ uik[11]*u[7]; 1998effa298cSHong Zhang dk[7] += uik[12]*u[4]+ uik[13]*u[5]+ uik[14]*u[6]+ uik[15]*u[7]; 1999effa298cSHong Zhang 2000effa298cSHong Zhang dk[8] += uik[0]*u[8] + uik[1]*u[9] + uik[2]*u[10] + uik[3]*u[11]; 2001effa298cSHong Zhang dk[9] += uik[4]*u[8] + uik[5]*u[9] + uik[6]*u[10] + uik[7]*u[11]; 2002effa298cSHong Zhang dk[10]+= uik[8]*u[8] + uik[9]*u[9] + uik[10]*u[10]+ uik[11]*u[11]; 2003effa298cSHong Zhang dk[11]+= uik[12]*u[8]+ uik[13]*u[9]+ uik[14]*u[10]+ uik[15]*u[11]; 2004effa298cSHong Zhang 2005effa298cSHong Zhang dk[12]+= uik[0]*u[12] + uik[1]*u[13] + uik[2]*u[14] + uik[3]*u[15]; 2006effa298cSHong Zhang dk[13]+= uik[4]*u[12] + uik[5]*u[13] + uik[6]*u[14] + uik[7]*u[15]; 2007effa298cSHong Zhang dk[14]+= uik[8]*u[12] + uik[9]*u[13] + uik[10]*u[14]+ uik[11]*u[15]; 2008effa298cSHong Zhang dk[15]+= uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]+ uik[15]*u[15]; 2009effa298cSHong Zhang 2010effa298cSHong Zhang /* update -U(i,k) */ 2011effa298cSHong Zhang ierr = PetscMemcpy(ba+ili*16,uik,16*sizeof(MatScalar));CHKERRQ(ierr); 2012effa298cSHong Zhang 2013effa298cSHong Zhang /* add multiple of row i to k-th row ... */ 2014effa298cSHong Zhang jmin = ili + 1; jmax = bi[i+1]; 2015effa298cSHong Zhang if (jmin < jmax){ 2016effa298cSHong Zhang for (j=jmin; j<jmax; j++) { 2017effa298cSHong Zhang /* rtmp += -U(i,k)^T * U_bar(i,j) */ 2018effa298cSHong Zhang rtmp_ptr = rtmp + bj[j]*16; 2019effa298cSHong Zhang u = ba + j*16; 2020effa298cSHong Zhang rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3]; 2021effa298cSHong Zhang rtmp_ptr[1] += uik[4]*u[0] + uik[5]*u[1] + uik[6]*u[2] + uik[7]*u[3]; 2022effa298cSHong Zhang rtmp_ptr[2] += uik[8]*u[0] + uik[9]*u[1] + uik[10]*u[2]+ uik[11]*u[3]; 2023effa298cSHong Zhang rtmp_ptr[3] += uik[12]*u[0]+ uik[13]*u[1]+ uik[14]*u[2]+ uik[15]*u[3]; 2024effa298cSHong Zhang 2025effa298cSHong Zhang rtmp_ptr[4] += uik[0]*u[4] + uik[1]*u[5] + uik[2]*u[6] + uik[3]*u[7]; 2026effa298cSHong Zhang rtmp_ptr[5] += uik[4]*u[4] + uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7]; 2027effa298cSHong Zhang rtmp_ptr[6] += uik[8]*u[4] + uik[9]*u[5] + uik[10]*u[6]+ uik[11]*u[7]; 2028effa298cSHong Zhang rtmp_ptr[7] += uik[12]*u[4]+ uik[13]*u[5]+ uik[14]*u[6]+ uik[15]*u[7]; 2029effa298cSHong Zhang 2030effa298cSHong Zhang rtmp_ptr[8] += uik[0]*u[8] + uik[1]*u[9] + uik[2]*u[10] + uik[3]*u[11]; 2031effa298cSHong Zhang rtmp_ptr[9] += uik[4]*u[8] + uik[5]*u[9] + uik[6]*u[10] + uik[7]*u[11]; 2032effa298cSHong Zhang rtmp_ptr[10]+= uik[8]*u[8] + uik[9]*u[9] + uik[10]*u[10]+ uik[11]*u[11]; 2033effa298cSHong Zhang rtmp_ptr[11]+= uik[12]*u[8]+ uik[13]*u[9]+ uik[14]*u[10]+ uik[15]*u[11]; 2034effa298cSHong Zhang 2035effa298cSHong Zhang rtmp_ptr[12]+= uik[0]*u[12] + uik[1]*u[13] + uik[2]*u[14] + uik[3]*u[15]; 2036effa298cSHong Zhang rtmp_ptr[13]+= uik[4]*u[12] + uik[5]*u[13] + uik[6]*u[14] + uik[7]*u[15]; 2037effa298cSHong Zhang rtmp_ptr[14]+= uik[8]*u[12] + uik[9]*u[13] + uik[10]*u[14]+ uik[11]*u[15]; 2038effa298cSHong Zhang rtmp_ptr[15]+= uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]+ uik[15]*u[15]; 2039effa298cSHong Zhang } 2040effa298cSHong Zhang 2041effa298cSHong Zhang /* ... add i to row list for next nonzero entry */ 2042effa298cSHong Zhang il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 2043effa298cSHong Zhang j = bj[jmin]; 2044effa298cSHong Zhang jl[i] = jl[j]; jl[j] = i; /* update jl */ 2045effa298cSHong Zhang } 2046effa298cSHong Zhang i = nexti; 2047effa298cSHong Zhang } 2048effa298cSHong Zhang 2049effa298cSHong Zhang /* save nonzero entries in k-th row of U ... */ 2050effa298cSHong Zhang 2051effa298cSHong Zhang /* invert diagonal block */ 2052effa298cSHong Zhang diag = ba+k*16; 2053effa298cSHong Zhang ierr = PetscMemcpy(diag,dk,16*sizeof(MatScalar));CHKERRQ(ierr); 2054effa298cSHong Zhang ierr = Kernel_A_gets_inverse_A_4(diag);CHKERRQ(ierr); 2055effa298cSHong Zhang 2056effa298cSHong Zhang jmin = bi[k]; jmax = bi[k+1]; 2057effa298cSHong Zhang if (jmin < jmax) { 2058effa298cSHong Zhang for (j=jmin; j<jmax; j++){ 2059effa298cSHong Zhang vj = bj[j]; /* block col. index of U */ 2060effa298cSHong Zhang u = ba + j*16; 2061effa298cSHong Zhang rtmp_ptr = rtmp + vj*16; 2062effa298cSHong Zhang for (k1=0; k1<16; k1++){ 2063effa298cSHong Zhang *u++ = *rtmp_ptr; 2064effa298cSHong Zhang *rtmp_ptr++ = 0.0; 2065effa298cSHong Zhang } 2066effa298cSHong Zhang } 2067effa298cSHong Zhang 2068effa298cSHong Zhang /* ... add k to row list for first nonzero entry in k-th row */ 2069effa298cSHong Zhang il[k] = jmin; 2070effa298cSHong Zhang i = bj[jmin]; 2071effa298cSHong Zhang jl[k] = jl[i]; jl[i] = k; 2072effa298cSHong Zhang } 2073effa298cSHong Zhang } 2074effa298cSHong Zhang 2075effa298cSHong Zhang ierr = PetscFree(rtmp);CHKERRQ(ierr); 2076effa298cSHong Zhang ierr = PetscFree(il);CHKERRQ(ierr); 2077effa298cSHong Zhang ierr = PetscFree(jl);CHKERRQ(ierr); 2078effa298cSHong Zhang ierr = PetscFree(dk);CHKERRQ(ierr); 2079effa298cSHong Zhang ierr = PetscFree(uik);CHKERRQ(ierr); 2080effa298cSHong Zhang if (a->permute){ 2081effa298cSHong Zhang ierr = PetscFree(aa);CHKERRQ(ierr); 2082effa298cSHong Zhang } 2083effa298cSHong Zhang 2084effa298cSHong Zhang ierr = ISRestoreIndices(perm,&perm_ptr);CHKERRQ(ierr); 2085effa298cSHong Zhang C->factor = FACTOR_CHOLESKY; 2086effa298cSHong Zhang C->assembled = PETSC_TRUE; 2087effa298cSHong Zhang C->preallocated = PETSC_TRUE; 2088effa298cSHong Zhang PLogFlops(1.3333*64*b->mbs); /* from inverting diagonal blocks */ 2089effa298cSHong Zhang PetscFunctionReturn(0); 2090effa298cSHong Zhang } 2091effa298cSHong Zhang 2092a1723e09SHong Zhang /* Version for when blocks are 3 by 3 */ 209349b5e25fSSatish Balay #undef __FUNC__ 20946f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_3" 20956f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat A,Mat *B) 209649b5e25fSSatish Balay { 209749b5e25fSSatish Balay Mat C = *B; 2098a1723e09SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 2099a1723e09SHong Zhang IS perm = b->row; 2100a1723e09SHong Zhang int *perm_ptr,ierr,i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 2101a1723e09SHong Zhang int *ai,*aj,*a2anew,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili; 2102a1723e09SHong Zhang MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 2103a1723e09SHong Zhang MatScalar *u,*diag,*rtmp,*rtmp_ptr; 210449b5e25fSSatish Balay 210549b5e25fSSatish Balay PetscFunctionBegin; 2106a1723e09SHong Zhang /* initialization */ 2107a1723e09SHong Zhang rtmp = (MatScalar*)PetscMalloc(9*mbs*sizeof(MatScalar));CHKPTRQ(rtmp); 2108a1723e09SHong Zhang ierr = PetscMemzero(rtmp,9*mbs*sizeof(MatScalar));CHKERRQ(ierr); 2109a1723e09SHong Zhang il = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(il); 2110a1723e09SHong Zhang jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 2111a1723e09SHong Zhang for (i=0; i<mbs; i++) { 2112a1723e09SHong Zhang jl[i] = mbs; il[0] = 0; 2113a1723e09SHong Zhang } 2114a1723e09SHong Zhang dk = (MatScalar*)PetscMalloc(9*sizeof(MatScalar));CHKPTRQ(dk); 2115a1723e09SHong Zhang uik = (MatScalar*)PetscMalloc(9*sizeof(MatScalar));CHKPTRQ(uik); 2116a1723e09SHong Zhang ierr = ISGetIndices(perm,&perm_ptr);CHKERRQ(ierr); 211749b5e25fSSatish Balay 2118a1723e09SHong Zhang /* check permutation */ 2119a1723e09SHong Zhang if (!a->permute){ 2120a1723e09SHong Zhang ai = a->i; aj = a->j; aa = a->a; 2121a1723e09SHong Zhang } else { 2122a1723e09SHong Zhang ai = a->inew; aj = a->jnew; 2123a1723e09SHong Zhang aa = (MatScalar*)PetscMalloc(9*ai[mbs]*sizeof(MatScalar));CHKPTRQ(aa); 2124a1723e09SHong Zhang ierr = PetscMemcpy(aa,a->a,9*ai[mbs]*sizeof(MatScalar));CHKERRQ(ierr); 2125a1723e09SHong Zhang a2anew = (int*)PetscMalloc(ai[mbs]*sizeof(int));CHKPTRQ(a2anew); 2126a1723e09SHong Zhang ierr= PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(int));CHKERRQ(ierr); 212749b5e25fSSatish Balay 2128a1723e09SHong Zhang for (i=0; i<mbs; i++){ 2129a1723e09SHong Zhang jmin = ai[i]; jmax = ai[i+1]; 2130a1723e09SHong Zhang for (j=jmin; j<jmax; j++){ 2131a1723e09SHong Zhang while (a2anew[j] != j){ 2132a1723e09SHong Zhang k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k; 2133a1723e09SHong Zhang for (k1=0; k1<9; k1++){ 2134a1723e09SHong Zhang dk[k1] = aa[k*9+k1]; 2135a1723e09SHong Zhang aa[k*9+k1] = aa[j*9+k1]; 2136a1723e09SHong Zhang aa[j*9+k1] = dk[k1]; 2137a1723e09SHong Zhang } 2138a1723e09SHong Zhang } 2139a1723e09SHong Zhang /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */ 2140a1723e09SHong Zhang if (i > aj[j]){ 214147c40530SHong Zhang /* printf("change orientation, row: %d, col: %d\n",i,aj[j]); */ 2142a1723e09SHong Zhang ap = aa + j*9; /* ptr to the beginning of j-th block of aa */ 2143a1723e09SHong Zhang for (k=0; k<9; k++) dk[k] = ap[k]; /* dk <- j-th block of aa */ 2144a1723e09SHong Zhang for (k=0; k<3; k++){ /* j-th block of aa <- dk^T */ 214547c40530SHong Zhang for (k1=0; k1<3; k1++) *ap++ = dk[k + 3*k1]; 2146a1723e09SHong Zhang } 2147a1723e09SHong Zhang } 2148a1723e09SHong Zhang } 2149a1723e09SHong Zhang } 2150a1723e09SHong Zhang ierr = PetscFree(a2anew);CHKERRA(ierr); 2151a1723e09SHong Zhang } 215249b5e25fSSatish Balay 2153a1723e09SHong Zhang /* for each row k */ 2154a1723e09SHong Zhang for (k = 0; k<mbs; k++){ 215549b5e25fSSatish Balay 2156a1723e09SHong Zhang /*initialize k-th row with elements nonzero in row perm(k) of A */ 2157a1723e09SHong Zhang jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1]; 2158a1723e09SHong Zhang if (jmin < jmax) { 2159a1723e09SHong Zhang ap = aa + jmin*9; 2160a1723e09SHong Zhang for (j = jmin; j < jmax; j++){ 2161a1723e09SHong Zhang vj = perm_ptr[aj[j]]; /* block col. index */ 2162a1723e09SHong Zhang rtmp_ptr = rtmp + vj*9; 2163a1723e09SHong Zhang for (i=0; i<9; i++) *rtmp_ptr++ = *ap++; 2164a1723e09SHong Zhang } 2165a1723e09SHong Zhang } 216649b5e25fSSatish Balay 2167a1723e09SHong Zhang /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 2168a1723e09SHong Zhang ierr = PetscMemcpy(dk,rtmp+k*9,9*sizeof(MatScalar));CHKERRQ(ierr); 2169a1723e09SHong Zhang i = jl[k]; /* first row to be added to k_th row */ 2170a1723e09SHong Zhang 2171a1723e09SHong Zhang while (i < mbs){ 2172a1723e09SHong Zhang nexti = jl[i]; /* next row to be added to k_th row */ 2173a1723e09SHong Zhang 2174a1723e09SHong Zhang /* compute multiplier */ 2175a1723e09SHong Zhang ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 2176a1723e09SHong Zhang 2177a1723e09SHong Zhang /* uik = -inv(Di)*U_bar(i,k) */ 2178a1723e09SHong Zhang diag = ba + i*9; 2179a1723e09SHong Zhang u = ba + ili*9; 2180a1723e09SHong Zhang 2181a1723e09SHong Zhang uik[0] = -(diag[0]*u[0] + diag[3]*u[1] + diag[6]*u[2]); 2182a1723e09SHong Zhang uik[1] = -(diag[1]*u[0] + diag[4]*u[1] + diag[7]*u[2]); 2183a1723e09SHong Zhang uik[2] = -(diag[2]*u[0] + diag[5]*u[1] + diag[8]*u[2]); 2184a1723e09SHong Zhang 2185a1723e09SHong Zhang uik[3] = -(diag[0]*u[3] + diag[3]*u[4] + diag[6]*u[5]); 2186a1723e09SHong Zhang uik[4] = -(diag[1]*u[3] + diag[4]*u[4] + diag[7]*u[5]); 2187a1723e09SHong Zhang uik[5] = -(diag[2]*u[3] + diag[5]*u[4] + diag[8]*u[5]); 2188a1723e09SHong Zhang 2189a1723e09SHong Zhang uik[6] = -(diag[0]*u[6] + diag[3]*u[7] + diag[6]*u[8]); 2190a1723e09SHong Zhang uik[7] = -(diag[1]*u[6] + diag[4]*u[7] + diag[7]*u[8]); 2191a1723e09SHong Zhang uik[8] = -(diag[2]*u[6] + diag[5]*u[7] + diag[8]*u[8]); 2192a1723e09SHong Zhang 2193a1723e09SHong Zhang /* update D(k) += -U(i,k)^T * U_bar(i,k) */ 2194a1723e09SHong Zhang dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2]; 2195a1723e09SHong Zhang dk[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2]; 2196a1723e09SHong Zhang dk[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2]; 2197a1723e09SHong Zhang 2198a1723e09SHong Zhang dk[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5]; 2199a1723e09SHong Zhang dk[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5]; 2200a1723e09SHong Zhang dk[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5]; 2201a1723e09SHong Zhang 2202a1723e09SHong Zhang dk[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8]; 2203a1723e09SHong Zhang dk[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8]; 2204a1723e09SHong Zhang dk[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8]; 2205a1723e09SHong Zhang 2206a1723e09SHong Zhang /* update -U(i,k) */ 2207a1723e09SHong Zhang ierr = PetscMemcpy(ba+ili*9,uik,9*sizeof(MatScalar));CHKERRQ(ierr); 2208a1723e09SHong Zhang 2209a1723e09SHong Zhang /* add multiple of row i to k-th row ... */ 2210a1723e09SHong Zhang jmin = ili + 1; jmax = bi[i+1]; 2211a1723e09SHong Zhang if (jmin < jmax){ 2212a1723e09SHong Zhang for (j=jmin; j<jmax; j++) { 2213a1723e09SHong Zhang /* rtmp += -U(i,k)^T * U_bar(i,j) */ 2214a1723e09SHong Zhang rtmp_ptr = rtmp + bj[j]*9; 2215a1723e09SHong Zhang u = ba + j*9; 2216a1723e09SHong Zhang rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2]; 2217a1723e09SHong Zhang rtmp_ptr[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2]; 2218a1723e09SHong Zhang rtmp_ptr[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2]; 2219a1723e09SHong Zhang 2220a1723e09SHong Zhang rtmp_ptr[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5]; 2221a1723e09SHong Zhang rtmp_ptr[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5]; 2222a1723e09SHong Zhang rtmp_ptr[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5]; 2223a1723e09SHong Zhang 2224a1723e09SHong Zhang rtmp_ptr[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8]; 2225a1723e09SHong Zhang rtmp_ptr[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8]; 2226a1723e09SHong Zhang rtmp_ptr[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8]; 222749b5e25fSSatish Balay } 2228a1723e09SHong Zhang 2229a1723e09SHong Zhang /* ... add i to row list for next nonzero entry */ 2230a1723e09SHong Zhang il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 2231a1723e09SHong Zhang j = bj[jmin]; 2232a1723e09SHong Zhang jl[i] = jl[j]; jl[j] = i; /* update jl */ 223349b5e25fSSatish Balay } 2234a1723e09SHong Zhang i = nexti; 223549b5e25fSSatish Balay } 2236a1723e09SHong Zhang 2237a1723e09SHong Zhang /* save nonzero entries in k-th row of U ... */ 2238a1723e09SHong Zhang 223949b5e25fSSatish Balay /* invert diagonal block */ 2240a1723e09SHong Zhang diag = ba+k*9; 2241a1723e09SHong Zhang ierr = PetscMemcpy(diag,dk,9*sizeof(MatScalar));CHKERRQ(ierr); 2242a1723e09SHong Zhang ierr = Kernel_A_gets_inverse_A_3(diag);CHKERRQ(ierr); 2243a1723e09SHong Zhang 2244a1723e09SHong Zhang jmin = bi[k]; jmax = bi[k+1]; 2245a1723e09SHong Zhang if (jmin < jmax) { 2246a1723e09SHong Zhang for (j=jmin; j<jmax; j++){ 2247a1723e09SHong Zhang vj = bj[j]; /* block col. index of U */ 2248a1723e09SHong Zhang u = ba + j*9; 2249a1723e09SHong Zhang rtmp_ptr = rtmp + vj*9; 2250a1723e09SHong Zhang for (k1=0; k1<9; k1++){ 2251a1723e09SHong Zhang *u++ = *rtmp_ptr; 2252a1723e09SHong Zhang *rtmp_ptr++ = 0.0; 2253a1723e09SHong Zhang } 2254a1723e09SHong Zhang } 2255a1723e09SHong Zhang 2256a1723e09SHong Zhang /* ... add k to row list for first nonzero entry in k-th row */ 2257a1723e09SHong Zhang il[k] = jmin; 2258a1723e09SHong Zhang i = bj[jmin]; 2259a1723e09SHong Zhang jl[k] = jl[i]; jl[i] = k; 2260a1723e09SHong Zhang } 226149b5e25fSSatish Balay } 226249b5e25fSSatish Balay 226349b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 2264a1723e09SHong Zhang ierr = PetscFree(il);CHKERRQ(ierr); 2265a1723e09SHong Zhang ierr = PetscFree(jl);CHKERRQ(ierr); 2266a1723e09SHong Zhang ierr = PetscFree(dk);CHKERRQ(ierr); 2267a1723e09SHong Zhang ierr = PetscFree(uik);CHKERRQ(ierr); 2268a1723e09SHong Zhang if (a->permute){ 2269a1723e09SHong Zhang ierr = PetscFree(aa);CHKERRQ(ierr); 2270a1723e09SHong Zhang } 2271a1723e09SHong Zhang 2272a1723e09SHong Zhang ierr = ISRestoreIndices(perm,&perm_ptr);CHKERRQ(ierr); 2273a1723e09SHong Zhang C->factor = FACTOR_CHOLESKY; 227449b5e25fSSatish Balay C->assembled = PETSC_TRUE; 22757a05c331SHong Zhang C->preallocated = PETSC_TRUE; 2276effa298cSHong Zhang PLogFlops(1.3333*27*b->mbs); /* from inverting diagonal blocks */ 227749b5e25fSSatish Balay PetscFunctionReturn(0); 227849b5e25fSSatish Balay } 2279a1723e09SHong Zhang 228049b5e25fSSatish Balay /* 228149b5e25fSSatish Balay Version for when blocks are 3 by 3 Using natural ordering 228249b5e25fSSatish Balay */ 228349b5e25fSSatish Balay #undef __FUNC__ 22846f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering" 22856f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering(Mat A,Mat *B) 228649b5e25fSSatish Balay { 228749b5e25fSSatish Balay Mat C = *B; 228849b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 228949b5e25fSSatish Balay int ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 229049b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 229149b5e25fSSatish Balay int *diag_offset = b->diag,*ai=a->i,*aj=a->j,*pj; 229249b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 229349b5e25fSSatish Balay MatScalar p1,p2,p3,p4,m1,m2,m3,m4,m5,m6,m7,m8,m9,x1,x2,x3,x4; 229449b5e25fSSatish Balay MatScalar p5,p6,p7,p8,p9,x5,x6,x7,x8,x9; 229549b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 229649b5e25fSSatish Balay 229749b5e25fSSatish Balay PetscFunctionBegin; 229849b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(9*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 229949b5e25fSSatish Balay 230049b5e25fSSatish Balay for (i=0; i<n; i++) { 230149b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 230249b5e25fSSatish Balay ajtmp = bj + bi[i]; 230349b5e25fSSatish Balay for (j=0; j<nz; j++) { 230449b5e25fSSatish Balay x = rtmp+9*ajtmp[j]; 230549b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = x[4] = x[5] = x[6] = x[7] = x[8] = 0.0; 230649b5e25fSSatish Balay } 230749b5e25fSSatish Balay /* load in initial (unfactored row) */ 230849b5e25fSSatish Balay nz = ai[i+1] - ai[i]; 230949b5e25fSSatish Balay ajtmpold = aj + ai[i]; 231049b5e25fSSatish Balay v = aa + 9*ai[i]; 231149b5e25fSSatish Balay for (j=0; j<nz; j++) { 231249b5e25fSSatish Balay x = rtmp+9*ajtmpold[j]; 231349b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 231449b5e25fSSatish Balay x[4] = v[4]; x[5] = v[5]; x[6] = v[6]; x[7] = v[7]; x[8] = v[8]; 231549b5e25fSSatish Balay v += 9; 231649b5e25fSSatish Balay } 231749b5e25fSSatish Balay row = *ajtmp++; 231849b5e25fSSatish Balay while (row < i) { 231949b5e25fSSatish Balay pc = rtmp + 9*row; 232049b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 232149b5e25fSSatish Balay p5 = pc[4]; p6 = pc[5]; p7 = pc[6]; p8 = pc[7]; p9 = pc[8]; 232249b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0 || p5 != 0.0 || 232349b5e25fSSatish Balay p6 != 0.0 || p7 != 0.0 || p8 != 0.0 || p9 != 0.0) { 232449b5e25fSSatish Balay pv = ba + 9*diag_offset[row]; 232549b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 232649b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 232749b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; x9 = pv[8]; 232849b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p4*x2 + p7*x3; 232949b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p5*x2 + p8*x3; 233049b5e25fSSatish Balay pc[2] = m3 = p3*x1 + p6*x2 + p9*x3; 233149b5e25fSSatish Balay 233249b5e25fSSatish Balay pc[3] = m4 = p1*x4 + p4*x5 + p7*x6; 233349b5e25fSSatish Balay pc[4] = m5 = p2*x4 + p5*x5 + p8*x6; 233449b5e25fSSatish Balay pc[5] = m6 = p3*x4 + p6*x5 + p9*x6; 233549b5e25fSSatish Balay 233649b5e25fSSatish Balay pc[6] = m7 = p1*x7 + p4*x8 + p7*x9; 233749b5e25fSSatish Balay pc[7] = m8 = p2*x7 + p5*x8 + p8*x9; 233849b5e25fSSatish Balay pc[8] = m9 = p3*x7 + p6*x8 + p9*x9; 233949b5e25fSSatish Balay 234049b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 234149b5e25fSSatish Balay pv += 9; 234249b5e25fSSatish Balay for (j=0; j<nz; j++) { 234349b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 234449b5e25fSSatish Balay x5 = pv[4]; x6 = pv[5]; x7 = pv[6]; x8 = pv[7]; x9 = pv[8]; 234549b5e25fSSatish Balay x = rtmp + 9*pj[j]; 234649b5e25fSSatish Balay x[0] -= m1*x1 + m4*x2 + m7*x3; 234749b5e25fSSatish Balay x[1] -= m2*x1 + m5*x2 + m8*x3; 234849b5e25fSSatish Balay x[2] -= m3*x1 + m6*x2 + m9*x3; 234949b5e25fSSatish Balay 235049b5e25fSSatish Balay x[3] -= m1*x4 + m4*x5 + m7*x6; 235149b5e25fSSatish Balay x[4] -= m2*x4 + m5*x5 + m8*x6; 235249b5e25fSSatish Balay x[5] -= m3*x4 + m6*x5 + m9*x6; 235349b5e25fSSatish Balay 235449b5e25fSSatish Balay x[6] -= m1*x7 + m4*x8 + m7*x9; 235549b5e25fSSatish Balay x[7] -= m2*x7 + m5*x8 + m8*x9; 235649b5e25fSSatish Balay x[8] -= m3*x7 + m6*x8 + m9*x9; 235749b5e25fSSatish Balay pv += 9; 235849b5e25fSSatish Balay } 235949b5e25fSSatish Balay PLogFlops(54*nz+36); 236049b5e25fSSatish Balay } 236149b5e25fSSatish Balay row = *ajtmp++; 236249b5e25fSSatish Balay } 236349b5e25fSSatish Balay /* finished row so stick it into b->a */ 236449b5e25fSSatish Balay pv = ba + 9*bi[i]; 236549b5e25fSSatish Balay pj = bj + bi[i]; 236649b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 236749b5e25fSSatish Balay for (j=0; j<nz; j++) { 236849b5e25fSSatish Balay x = rtmp+9*pj[j]; 236949b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 237049b5e25fSSatish Balay pv[4] = x[4]; pv[5] = x[5]; pv[6] = x[6]; pv[7] = x[7]; pv[8] = x[8]; 237149b5e25fSSatish Balay pv += 9; 237249b5e25fSSatish Balay } 237349b5e25fSSatish Balay /* invert diagonal block */ 237449b5e25fSSatish Balay w = ba + 9*diag_offset[i]; 237549b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_3(w);CHKERRQ(ierr); 237649b5e25fSSatish Balay } 237749b5e25fSSatish Balay 237849b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 2379effa298cSHong Zhang C->factor = FACTOR_CHOLESKY; 238049b5e25fSSatish Balay C->assembled = PETSC_TRUE; 23815c0bcdfcSHong Zhang C->preallocated = PETSC_TRUE; 238249b5e25fSSatish Balay PLogFlops(1.3333*27*b->mbs); /* from inverting diagonal blocks */ 238349b5e25fSSatish Balay PetscFunctionReturn(0); 238449b5e25fSSatish Balay } 238549b5e25fSSatish Balay 238649b5e25fSSatish Balay /* 2387fcf159c0SHong Zhang Numeric U^T*D*U factorization for SBAIJ format. Modified from SNF of YSMP. 2388cc0c071aSHong Zhang Version for blocks 2 by 2. 238949b5e25fSSatish Balay */ 239049b5e25fSSatish Balay #undef __FUNC__ 23916f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_2" 23926f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_2(Mat A,Mat *B) 239349b5e25fSSatish Balay { 239449b5e25fSSatish Balay Mat C = *B; 239591602c66SHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 2396cc0c071aSHong Zhang IS perm = b->row; 2397cc0c071aSHong Zhang int *perm_ptr,ierr,i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 2398cc0c071aSHong Zhang int *ai,*aj,*a2anew,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili; 2399a1723e09SHong Zhang MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 2400cc0c071aSHong Zhang MatScalar *u,*diag,*rtmp,*rtmp_ptr; 240149b5e25fSSatish Balay 240249b5e25fSSatish Balay PetscFunctionBegin; 240349b5e25fSSatish Balay 240491602c66SHong Zhang /* initialization */ 240591602c66SHong Zhang /* il and jl record the first nonzero element in each row of the accessing 240691602c66SHong Zhang window U(0:k, k:mbs-1). 240791602c66SHong Zhang jl: list of rows to be added to uneliminated rows 240891602c66SHong Zhang i>= k: jl(i) is the first row to be added to row i 240991602c66SHong Zhang i< k: jl(i) is the row following row i in some list of rows 241091602c66SHong Zhang jl(i) = mbs indicates the end of a list 241191602c66SHong Zhang il(i): points to the first nonzero element in columns k,...,mbs-1 of 241291602c66SHong Zhang row i of U */ 2413cc0c071aSHong Zhang rtmp = (MatScalar*)PetscMalloc(4*mbs*sizeof(MatScalar));CHKPTRQ(rtmp); 2414cc0c071aSHong Zhang ierr = PetscMemzero(rtmp,4*mbs*sizeof(MatScalar));CHKERRQ(ierr); 241591602c66SHong Zhang il = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(il); 241691602c66SHong Zhang jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 241791602c66SHong Zhang for (i=0; i<mbs; i++) { 24183845f261SHong Zhang jl[i] = mbs; il[0] = 0; 241991602c66SHong Zhang } 2420cc0c071aSHong Zhang dk = (MatScalar*)PetscMalloc(4*sizeof(MatScalar));CHKPTRQ(dk); 2421cc0c071aSHong Zhang uik = (MatScalar*)PetscMalloc(4*sizeof(MatScalar));CHKPTRQ(uik); 2422cc0c071aSHong Zhang ierr = ISGetIndices(perm,&perm_ptr);CHKERRQ(ierr); 2423cc0c071aSHong Zhang 2424cc0c071aSHong Zhang /* check permutation */ 2425cc0c071aSHong Zhang if (!a->permute){ 2426cc0c071aSHong Zhang ai = a->i; aj = a->j; aa = a->a; 2427cc0c071aSHong Zhang } else { 2428cc0c071aSHong Zhang ai = a->inew; aj = a->jnew; 2429cc0c071aSHong Zhang aa = (MatScalar*)PetscMalloc(4*ai[mbs]*sizeof(MatScalar));CHKPTRQ(aa); 2430cc0c071aSHong Zhang ierr = PetscMemcpy(aa,a->a,4*ai[mbs]*sizeof(MatScalar));CHKERRQ(ierr); 2431cc0c071aSHong Zhang a2anew = (int*)PetscMalloc(ai[mbs]*sizeof(int));CHKPTRQ(a2anew); 2432cc0c071aSHong Zhang ierr= PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(int));CHKERRQ(ierr); 2433cc0c071aSHong Zhang 2434cc0c071aSHong Zhang for (i=0; i<mbs; i++){ 2435cc0c071aSHong Zhang jmin = ai[i]; jmax = ai[i+1]; 2436cc0c071aSHong Zhang for (j=jmin; j<jmax; j++){ 2437cc0c071aSHong Zhang while (a2anew[j] != j){ 2438cc0c071aSHong Zhang k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k; 2439cc0c071aSHong Zhang for (k1=0; k1<4; k1++){ 2440cc0c071aSHong Zhang dk[k1] = aa[k*4+k1]; 2441cc0c071aSHong Zhang aa[k*4+k1] = aa[j*4+k1]; 2442cc0c071aSHong Zhang aa[j*4+k1] = dk[k1]; 2443cc0c071aSHong Zhang } 2444cc0c071aSHong Zhang } 2445cc0c071aSHong Zhang /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */ 2446cc0c071aSHong Zhang if (i > aj[j]){ 2447a1723e09SHong Zhang /* printf("change orientation, row: %d, col: %d\n",i,aj[j]); */ 2448cc0c071aSHong Zhang ap = aa + j*4; /* ptr to the beginning of the block */ 2449cc0c071aSHong Zhang dk[1] = ap[1]; /* swap ap[1] and ap[2] */ 2450cc0c071aSHong Zhang ap[1] = ap[2]; 2451cc0c071aSHong Zhang ap[2] = dk[1]; 2452cc0c071aSHong Zhang } 2453cc0c071aSHong Zhang } 2454cc0c071aSHong Zhang } 2455cc0c071aSHong Zhang ierr = PetscFree(a2anew);CHKERRA(ierr); 2456cc0c071aSHong Zhang } 24573845f261SHong Zhang 245891602c66SHong Zhang /* for each row k */ 245991602c66SHong Zhang for (k = 0; k<mbs; k++){ 246091602c66SHong Zhang 246191602c66SHong Zhang /*initialize k-th row with elements nonzero in row perm(k) of A */ 2462cc0c071aSHong Zhang jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1]; 246391602c66SHong Zhang if (jmin < jmax) { 2464cc0c071aSHong Zhang ap = aa + jmin*4; 246591602c66SHong Zhang for (j = jmin; j < jmax; j++){ 2466cc0c071aSHong Zhang vj = perm_ptr[aj[j]]; /* block col. index */ 2467cc0c071aSHong Zhang rtmp_ptr = rtmp + vj*4; 2468cc0c071aSHong Zhang for (i=0; i<4; i++) *rtmp_ptr++ = *ap++; 246991602c66SHong Zhang } 247091602c66SHong Zhang } 247191602c66SHong Zhang 247291602c66SHong Zhang /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 2473cc0c071aSHong Zhang ierr = PetscMemcpy(dk,rtmp+k*4,4*sizeof(MatScalar));CHKERRQ(ierr); 247491602c66SHong Zhang i = jl[k]; /* first row to be added to k_th row */ 247591602c66SHong Zhang 247691602c66SHong Zhang while (i < mbs){ 247791602c66SHong Zhang nexti = jl[i]; /* next row to be added to k_th row */ 247891602c66SHong Zhang 24793845f261SHong Zhang /* compute multiplier */ 248091602c66SHong Zhang ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 24813845f261SHong Zhang 24823845f261SHong Zhang /* uik = -inv(Di)*U_bar(i,k): - ba[ili]*ba[i] */ 2483cc0c071aSHong Zhang diag = ba + i*4; 2484cc0c071aSHong Zhang u = ba + ili*4; 2485cc0c071aSHong Zhang uik[0] = -(diag[0]*u[0] + diag[2]*u[1]); 2486cc0c071aSHong Zhang uik[1] = -(diag[1]*u[0] + diag[3]*u[1]); 2487cc0c071aSHong Zhang uik[2] = -(diag[0]*u[2] + diag[2]*u[3]); 2488cc0c071aSHong Zhang uik[3] = -(diag[1]*u[2] + diag[3]*u[3]); 24893845f261SHong Zhang 24903845f261SHong Zhang /* update D(k) += -U(i,k)^T * U_bar(i,k): dk += uik*ba[ili] */ 2491cc0c071aSHong Zhang dk[0] += uik[0]*u[0] + uik[1]*u[1]; 2492cc0c071aSHong Zhang dk[1] += uik[2]*u[0] + uik[3]*u[1]; 2493cc0c071aSHong Zhang dk[2] += uik[0]*u[2] + uik[1]*u[3]; 2494cc0c071aSHong Zhang dk[3] += uik[2]*u[2] + uik[3]*u[3]; 24953845f261SHong Zhang 24963845f261SHong Zhang /* update -U(i,k): ba[ili] = uik */ 2497cc0c071aSHong Zhang ierr = PetscMemcpy(ba+ili*4,uik,4*sizeof(MatScalar));CHKERRQ(ierr); 249891602c66SHong Zhang 249991602c66SHong Zhang /* add multiple of row i to k-th row ... */ 250091602c66SHong Zhang jmin = ili + 1; jmax = bi[i+1]; 250191602c66SHong Zhang if (jmin < jmax){ 25023845f261SHong Zhang for (j=jmin; j<jmax; j++) { 25033845f261SHong Zhang /* rtmp += -U(i,k)^T * U_bar(i,j): rtmp[bj[j]] += uik*ba[j]; */ 2504cc0c071aSHong Zhang rtmp_ptr = rtmp + bj[j]*4; 2505cc0c071aSHong Zhang u = ba + j*4; 2506cc0c071aSHong Zhang rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1]; 2507cc0c071aSHong Zhang rtmp_ptr[1] += uik[2]*u[0] + uik[3]*u[1]; 2508cc0c071aSHong Zhang rtmp_ptr[2] += uik[0]*u[2] + uik[1]*u[3]; 2509cc0c071aSHong Zhang rtmp_ptr[3] += uik[2]*u[2] + uik[3]*u[3]; 25103845f261SHong Zhang } 25113845f261SHong Zhang 251291602c66SHong Zhang /* ... add i to row list for next nonzero entry */ 251391602c66SHong Zhang il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 251491602c66SHong Zhang j = bj[jmin]; 251591602c66SHong Zhang jl[i] = jl[j]; jl[j] = i; /* update jl */ 251691602c66SHong Zhang } 2517a1723e09SHong Zhang i = nexti; 251891602c66SHong Zhang } 2519cc0c071aSHong Zhang 252091602c66SHong Zhang /* save nonzero entries in k-th row of U ... */ 25213845f261SHong Zhang 2522cc0c071aSHong Zhang /* invert diagonal block */ 2523cc0c071aSHong Zhang diag = ba+k*4; 2524cc0c071aSHong Zhang ierr = PetscMemcpy(diag,dk,4*sizeof(MatScalar));CHKERRQ(ierr); 25253845f261SHong Zhang ierr = Kernel_A_gets_inverse_A_2(diag);CHKERRQ(ierr); 25263845f261SHong Zhang 252791602c66SHong Zhang jmin = bi[k]; jmax = bi[k+1]; 252891602c66SHong Zhang if (jmin < jmax) { 252991602c66SHong Zhang for (j=jmin; j<jmax; j++){ 2530cc0c071aSHong Zhang vj = bj[j]; /* block col. index of U */ 2531cc0c071aSHong Zhang u = ba + j*4; 2532cc0c071aSHong Zhang rtmp_ptr = rtmp + vj*4; 2533cc0c071aSHong Zhang for (k1=0; k1<4; k1++){ 2534cc0c071aSHong Zhang *u++ = *rtmp_ptr; 2535cc0c071aSHong Zhang *rtmp_ptr++ = 0.0; 2536cc0c071aSHong Zhang } 2537cc0c071aSHong Zhang } 25383845f261SHong Zhang 253991602c66SHong Zhang /* ... add k to row list for first nonzero entry in k-th row */ 254091602c66SHong Zhang il[k] = jmin; 254191602c66SHong Zhang i = bj[jmin]; 254291602c66SHong Zhang jl[k] = jl[i]; jl[i] = k; 254391602c66SHong Zhang } 254491602c66SHong Zhang } 25453845f261SHong Zhang 254649b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 254791602c66SHong Zhang ierr = PetscFree(il);CHKERRQ(ierr); 254891602c66SHong Zhang ierr = PetscFree(jl);CHKERRQ(ierr); 25493845f261SHong Zhang ierr = PetscFree(dk);CHKERRQ(ierr); 25503845f261SHong Zhang ierr = PetscFree(uik);CHKERRQ(ierr); 255191602c66SHong Zhang if (a->permute){ 255291602c66SHong Zhang ierr = PetscFree(aa);CHKERRQ(ierr); 255391602c66SHong Zhang } 255491602c66SHong Zhang 2555cc0c071aSHong Zhang ierr = ISRestoreIndices(perm,&perm_ptr);CHKERRQ(ierr); 255691602c66SHong Zhang C->factor = FACTOR_CHOLESKY; 255749b5e25fSSatish Balay C->assembled = PETSC_TRUE; 25585c0bcdfcSHong Zhang C->preallocated = PETSC_TRUE; 2559effa298cSHong Zhang PLogFlops(1.3333*8*b->mbs); /* from inverting diagonal blocks */ 256049b5e25fSSatish Balay PetscFunctionReturn(0); 256149b5e25fSSatish Balay } 256291602c66SHong Zhang 256349b5e25fSSatish Balay /* 256449b5e25fSSatish Balay Version for when blocks are 2 by 2 Using natural ordering 256549b5e25fSSatish Balay */ 256649b5e25fSSatish Balay #undef __FUNC__ 25676f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering" 25686f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering(Mat A,Mat *B) 256949b5e25fSSatish Balay { 257049b5e25fSSatish Balay Mat C = *B; 257149b5e25fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ *)C->data; 257249b5e25fSSatish Balay int ierr,i,j,n = a->mbs,*bi = b->i,*bj = b->j; 257349b5e25fSSatish Balay int *ajtmpold,*ajtmp,nz,row; 257449b5e25fSSatish Balay int *diag_offset = b->diag,*ai=a->i,*aj=a->j,*pj; 257549b5e25fSSatish Balay MatScalar *pv,*v,*rtmp,*pc,*w,*x; 257649b5e25fSSatish Balay MatScalar p1,p2,p3,p4,m1,m2,m3,m4,x1,x2,x3,x4; 257749b5e25fSSatish Balay MatScalar *ba = b->a,*aa = a->a; 257849b5e25fSSatish Balay 257949b5e25fSSatish Balay PetscFunctionBegin; 258049b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(4*(n+1)*sizeof(MatScalar));CHKPTRQ(rtmp); 258149b5e25fSSatish Balay 258249b5e25fSSatish Balay for (i=0; i<n; i++) { 258349b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 258449b5e25fSSatish Balay ajtmp = bj + bi[i]; 258549b5e25fSSatish Balay for (j=0; j<nz; j++) { 258649b5e25fSSatish Balay x = rtmp+4*ajtmp[j]; 258749b5e25fSSatish Balay x[0] = x[1] = x[2] = x[3] = 0.0; 258849b5e25fSSatish Balay } 258949b5e25fSSatish Balay /* load in initial (unfactored row) */ 259049b5e25fSSatish Balay nz = ai[i+1] - ai[i]; 259149b5e25fSSatish Balay ajtmpold = aj + ai[i]; 259249b5e25fSSatish Balay v = aa + 4*ai[i]; 259349b5e25fSSatish Balay for (j=0; j<nz; j++) { 259449b5e25fSSatish Balay x = rtmp+4*ajtmpold[j]; 259549b5e25fSSatish Balay x[0] = v[0]; x[1] = v[1]; x[2] = v[2]; x[3] = v[3]; 259649b5e25fSSatish Balay v += 4; 259749b5e25fSSatish Balay } 259849b5e25fSSatish Balay row = *ajtmp++; 259949b5e25fSSatish Balay while (row < i) { 260049b5e25fSSatish Balay pc = rtmp + 4*row; 260149b5e25fSSatish Balay p1 = pc[0]; p2 = pc[1]; p3 = pc[2]; p4 = pc[3]; 260249b5e25fSSatish Balay if (p1 != 0.0 || p2 != 0.0 || p3 != 0.0 || p4 != 0.0) { 260349b5e25fSSatish Balay pv = ba + 4*diag_offset[row]; 260449b5e25fSSatish Balay pj = bj + diag_offset[row] + 1; 260549b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 260649b5e25fSSatish Balay pc[0] = m1 = p1*x1 + p3*x2; 260749b5e25fSSatish Balay pc[1] = m2 = p2*x1 + p4*x2; 260849b5e25fSSatish Balay pc[2] = m3 = p1*x3 + p3*x4; 260949b5e25fSSatish Balay pc[3] = m4 = p2*x3 + p4*x4; 261049b5e25fSSatish Balay nz = bi[row+1] - diag_offset[row] - 1; 261149b5e25fSSatish Balay pv += 4; 261249b5e25fSSatish Balay for (j=0; j<nz; j++) { 261349b5e25fSSatish Balay x1 = pv[0]; x2 = pv[1]; x3 = pv[2]; x4 = pv[3]; 261449b5e25fSSatish Balay x = rtmp + 4*pj[j]; 261549b5e25fSSatish Balay x[0] -= m1*x1 + m3*x2; 261649b5e25fSSatish Balay x[1] -= m2*x1 + m4*x2; 261749b5e25fSSatish Balay x[2] -= m1*x3 + m3*x4; 261849b5e25fSSatish Balay x[3] -= m2*x3 + m4*x4; 261949b5e25fSSatish Balay pv += 4; 262049b5e25fSSatish Balay } 262149b5e25fSSatish Balay PLogFlops(16*nz+12); 262249b5e25fSSatish Balay } 262349b5e25fSSatish Balay row = *ajtmp++; 262449b5e25fSSatish Balay } 262549b5e25fSSatish Balay /* finished row so stick it into b->a */ 262649b5e25fSSatish Balay pv = ba + 4*bi[i]; 262749b5e25fSSatish Balay pj = bj + bi[i]; 262849b5e25fSSatish Balay nz = bi[i+1] - bi[i]; 262949b5e25fSSatish Balay for (j=0; j<nz; j++) { 263049b5e25fSSatish Balay x = rtmp+4*pj[j]; 263149b5e25fSSatish Balay pv[0] = x[0]; pv[1] = x[1]; pv[2] = x[2]; pv[3] = x[3]; 263249b5e25fSSatish Balay pv += 4; 263349b5e25fSSatish Balay } 263449b5e25fSSatish Balay /* invert diagonal block */ 263549b5e25fSSatish Balay w = ba + 4*diag_offset[i]; 263649b5e25fSSatish Balay ierr = Kernel_A_gets_inverse_A_2(w);CHKERRQ(ierr); 263749b5e25fSSatish Balay /*Kernel_A_gets_inverse_A(bs,w,v_pivots,v_work);*/ 263849b5e25fSSatish Balay } 263949b5e25fSSatish Balay 264049b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 264149b5e25fSSatish Balay C->factor = FACTOR_LU; 264249b5e25fSSatish Balay C->assembled = PETSC_TRUE; 26435c0bcdfcSHong Zhang C->preallocated = PETSC_TRUE; 264449b5e25fSSatish Balay PLogFlops(1.3333*8*b->mbs); /* from inverting diagonal blocks */ 264549b5e25fSSatish Balay PetscFunctionReturn(0); 264649b5e25fSSatish Balay } 264749b5e25fSSatish Balay 264849b5e25fSSatish Balay /* 26495c0bcdfcSHong Zhang Numeric U^T*D*U factorization for SBAIJ format. Modified from SNF of YSMP. 265091602c66SHong Zhang Version for blocks are 1 by 1. 265149b5e25fSSatish Balay */ 265249b5e25fSSatish Balay #undef __FUNC__ 26536f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactorNumeric_SeqSBAIJ_1" 26546f9a564bSHong Zhang int MatCholeskyFactorNumeric_SeqSBAIJ_1(Mat A,Mat *B) 265549b5e25fSSatish Balay { 265649b5e25fSSatish Balay Mat C = *B; 265749b5e25fSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 265849b5e25fSSatish Balay IS ip = b->row; 2659351d0355SHong Zhang int *rip,ierr,i,j,mbs = a->mbs,*bi = b->i,*bj = b->j; 2660cb718733SHong Zhang int *ai,*aj,*r; 2661066653e3SSatish Balay MatScalar *rtmp; 26622d007305SHong Zhang MatScalar *ba = b->a,*aa,ak; 266349b5e25fSSatish Balay MatScalar dk,uikdi; 2664cc0c071aSHong Zhang int k,jmin,jmax,*jl,*il,vj,nexti,ili; 266549b5e25fSSatish Balay 266649b5e25fSSatish Balay PetscFunctionBegin; 266749b5e25fSSatish Balay ierr = ISGetIndices(ip,&rip);CHKERRQ(ierr); 2668cb718733SHong Zhang if (!a->permute){ 26692d007305SHong Zhang ai = a->i; aj = a->j; aa = a->a; 26702d007305SHong Zhang } else { 26712d007305SHong Zhang ai = a->inew; aj = a->jnew; 26722d007305SHong Zhang aa = (MatScalar*)PetscMalloc(ai[mbs]*sizeof(MatScalar));CHKPTRQ(aa); 2673cb718733SHong Zhang ierr = PetscMemcpy(aa,a->a,ai[mbs]*sizeof(MatScalar));CHKERRQ(ierr); 26742d007305SHong Zhang r = (int*)PetscMalloc(ai[mbs]*sizeof(int));CHKPTRQ(r); 26752d007305SHong Zhang ierr= PetscMemcpy(r,a->a2anew,(ai[mbs])*sizeof(int));CHKERRQ(ierr); 26762d007305SHong Zhang 26772d007305SHong Zhang jmin = ai[0]; jmax = ai[mbs]; 26782d007305SHong Zhang for (j=jmin; j<jmax; j++){ 2679cb718733SHong Zhang while (r[j] != j){ 26802d007305SHong Zhang k = r[j]; r[j] = r[k]; r[k] = k; 26812d007305SHong Zhang ak = aa[k]; aa[k] = aa[j]; aa[j] = ak; 26822d007305SHong Zhang } 26832d007305SHong Zhang } 26842d007305SHong Zhang ierr = PetscFree(r);CHKERRA(ierr); 26852d007305SHong Zhang } 26862d007305SHong Zhang 268791602c66SHong Zhang /* initialization */ 268849b5e25fSSatish Balay /* il and jl record the first nonzero element in each row of the accessing 268949b5e25fSSatish Balay window U(0:k, k:mbs-1). 269049b5e25fSSatish Balay jl: list of rows to be added to uneliminated rows 269149b5e25fSSatish Balay i>= k: jl(i) is the first row to be added to row i 269249b5e25fSSatish Balay i< k: jl(i) is the row following row i in some list of rows 269349b5e25fSSatish Balay jl(i) = mbs indicates the end of a list 269449b5e25fSSatish Balay il(i): points to the first nonzero element in columns k,...,mbs-1 of 269549b5e25fSSatish Balay row i of U */ 269649b5e25fSSatish Balay rtmp = (MatScalar*)PetscMalloc(mbs*sizeof(MatScalar));CHKPTRQ(rtmp); 269749b5e25fSSatish Balay il = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(il); 269849b5e25fSSatish Balay jl = (int*)PetscMalloc(mbs*sizeof(int));CHKPTRQ(jl); 269949b5e25fSSatish Balay for (i=0; i<mbs; i++) { 270049b5e25fSSatish Balay rtmp[i] = 0.0; jl[i] = mbs; il[0] = 0; 270149b5e25fSSatish Balay } 270249b5e25fSSatish Balay 270391602c66SHong Zhang /* for each row k */ 270449b5e25fSSatish Balay for (k = 0; k<mbs; k++){ 270549b5e25fSSatish Balay 270691602c66SHong Zhang /*initialize k-th row with elements nonzero in row perm(k) of A */ 270749b5e25fSSatish Balay jmin = ai[rip[k]]; jmax = ai[rip[k]+1]; 270849b5e25fSSatish Balay if (jmin < jmax) { 270949b5e25fSSatish Balay for (j = jmin; j < jmax; j++){ 2710351d0355SHong Zhang vj = rip[aj[j]]; 2711cc0c071aSHong Zhang /* if (k <= vj)*/ rtmp[vj] = aa[j]; 271249b5e25fSSatish Balay } 271349b5e25fSSatish Balay } 271449b5e25fSSatish Balay 271591602c66SHong Zhang /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 271649b5e25fSSatish Balay dk = rtmp[k]; 271749b5e25fSSatish Balay i = jl[k]; /* first row to be added to k_th row */ 271849b5e25fSSatish Balay /* printf(" k=%d, pivot row = %d\n",k,i); */ 271949b5e25fSSatish Balay 272049b5e25fSSatish Balay while (i < mbs){ 272149b5e25fSSatish Balay nexti = jl[i]; /* next row to be added to k_th row */ 272249b5e25fSSatish Balay 272391602c66SHong Zhang /* compute multiplier, update D(k) and U(i,k) */ 272449b5e25fSSatish Balay ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 272549b5e25fSSatish Balay uikdi = - ba[ili]*ba[i]; 272649b5e25fSSatish Balay dk += uikdi*ba[ili]; 2727658e7b3eSHong Zhang ba[ili] = uikdi; /* -U(i,k) */ 272849b5e25fSSatish Balay 272991602c66SHong Zhang /* add multiple of row i to k-th row ... */ 273049b5e25fSSatish Balay jmin = ili + 1; jmax = bi[i+1]; 273149b5e25fSSatish Balay if (jmin < jmax){ 273249b5e25fSSatish Balay for (j=jmin; j<jmax; j++) rtmp[bj[j]] += uikdi*ba[j]; 273391602c66SHong Zhang /* ... add i to row list for next nonzero entry */ 273449b5e25fSSatish Balay il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 273549b5e25fSSatish Balay j = bj[jmin]; 273649b5e25fSSatish Balay jl[i] = jl[j]; jl[j] = i; /* update jl */ 273749b5e25fSSatish Balay } 27388be8c0c7SHong Zhang i = nexti; /* printf(" pivot row i=%d\n",i); */ 273949b5e25fSSatish Balay } 274049b5e25fSSatish Balay 274191602c66SHong Zhang /* check for zero pivot and save diagoanl element */ 274249b5e25fSSatish Balay if (dk == 0.0){ 274329bbc08cSBarry Smith SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot"); 27448be8c0c7SHong Zhang }else if (PetscRealPart(dk) < 0){ 27458be8c0c7SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Negative pivot: d[%d] = %g\n",k,dk); 274649b5e25fSSatish Balay } 274749b5e25fSSatish Balay 274891602c66SHong Zhang /* save nonzero entries in k-th row of U ... */ 2749f3dd7b2dSKris Buschelman ba[k] = 1.0/dk; 275049b5e25fSSatish Balay jmin = bi[k]; jmax = bi[k+1]; 275149b5e25fSSatish Balay if (jmin < jmax) { 275249b5e25fSSatish Balay for (j=jmin; j<jmax; j++){ 2753cc0c071aSHong Zhang vj = bj[j]; ba[j] = rtmp[vj]; rtmp[vj] = 0.0; 275449b5e25fSSatish Balay } 275591602c66SHong Zhang /* ... add k to row list for first nonzero entry in k-th row */ 275649b5e25fSSatish Balay il[k] = jmin; 275749b5e25fSSatish Balay i = bj[jmin]; 275849b5e25fSSatish Balay jl[k] = jl[i]; jl[i] = k; 275949b5e25fSSatish Balay } 276049b5e25fSSatish Balay } 276149b5e25fSSatish Balay 276249b5e25fSSatish Balay ierr = PetscFree(rtmp);CHKERRQ(ierr); 276349b5e25fSSatish Balay ierr = PetscFree(il);CHKERRQ(ierr); 276449b5e25fSSatish Balay ierr = PetscFree(jl);CHKERRQ(ierr); 2765cb718733SHong Zhang if (a->permute){ 2766cb718733SHong Zhang ierr = PetscFree(aa);CHKERRQ(ierr); 2767cb718733SHong Zhang } 276849b5e25fSSatish Balay 276949b5e25fSSatish Balay ierr = ISRestoreIndices(ip,&rip);CHKERRQ(ierr); 27708be8c0c7SHong Zhang C->factor = FACTOR_CHOLESKY; 277149b5e25fSSatish Balay C->assembled = PETSC_TRUE; 27725c0bcdfcSHong Zhang C->preallocated = PETSC_TRUE; 277349b5e25fSSatish Balay PLogFlops(b->mbs); 27745c0bcdfcSHong Zhang #ifdef TEMP 27755c0bcdfcSHong Zhang printf("in factnum_1\n"); 27765c0bcdfcSHong Zhang for (k=0; k<mbs; k++){ 27775c0bcdfcSHong Zhang i = b->i[k+1] - b->i[k]; 27785c0bcdfcSHong Zhang printf("\n b->i[%d]: %d, nzk: %d, diag: %g\n",k,b->i[k],i,b->a[k]); 27795c0bcdfcSHong Zhang jmin = b->i[k]; jmax = b->i[k+1]; 27805c0bcdfcSHong Zhang for (j=jmin; j<jmax; j++){ 27815c0bcdfcSHong Zhang printf(" %d %g, ",b->j[j],b->a[j]); 27825c0bcdfcSHong Zhang } 27835c0bcdfcSHong Zhang } 27845c0bcdfcSHong Zhang #endif 278549b5e25fSSatish Balay PetscFunctionReturn(0); 278649b5e25fSSatish Balay } 278749b5e25fSSatish Balay 278849b5e25fSSatish Balay #undef __FUNC__ 27896f9a564bSHong Zhang #define __FUNC__ "MatCholeskyFactor_SeqSBAIJ" 2790b8b23757SHong Zhang int MatCholeskyFactor_SeqSBAIJ(Mat A,IS perm,PetscReal f) 279149b5e25fSSatish Balay { 27924445ddedSHong Zhang int ierr; 279349b5e25fSSatish Balay Mat C; 279449b5e25fSSatish Balay 279549b5e25fSSatish Balay PetscFunctionBegin; 2796b8b23757SHong Zhang ierr = MatCholeskyFactorSymbolic(A,perm,f,&C);CHKERRQ(ierr); 2797a4ada70bSHong Zhang ierr = MatCholeskyFactorNumeric(A,&C);CHKERRQ(ierr); 27984445ddedSHong Zhang ierr = MatHeaderCopy(A,C);CHKERRQ(ierr); 279949b5e25fSSatish Balay PetscFunctionReturn(0); 280049b5e25fSSatish Balay } 280149b5e25fSSatish Balay 280249b5e25fSSatish Balay 2803