1 2 #include <../src/mat/impls/sbaij/seq/sbaij.h> 3 #include <../src/mat/blockinvert.h> 4 5 /* 6 Version for when blocks are 5 by 5 Using natural ordering 7 */ 8 #undef __FUNCT__ 9 #define __FUNCT__ "MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering" 10 PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering(Mat C,Mat A,const MatFactorInfo *info) 11 { 12 Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data; 13 PetscErrorCode ierr; 14 PetscInt i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 15 PetscInt *ai,*aj,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili,ipvt[5]; 16 MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 17 MatScalar *u,*d,*rtmp,*rtmp_ptr,work[25]; 18 PetscReal shift = info->shiftamount; 19 20 PetscFunctionBegin; 21 /* initialization */ 22 ierr = PetscMalloc(25*mbs*sizeof(MatScalar),&rtmp);CHKERRQ(ierr); 23 ierr = PetscMemzero(rtmp,25*mbs*sizeof(MatScalar));CHKERRQ(ierr); 24 ierr = PetscMalloc2(mbs,PetscInt,&il,mbs,PetscInt,&jl);CHKERRQ(ierr); 25 for (i=0; i<mbs; i++) { 26 jl[i] = mbs; il[0] = 0; 27 } 28 ierr = PetscMalloc2(25,MatScalar,&dk,25,MatScalar,&uik);CHKERRQ(ierr); 29 ai = a->i; aj = a->j; aa = a->a; 30 31 /* for each row k */ 32 for (k = 0; k<mbs; k++) { 33 34 /*initialize k-th row with elements nonzero in row k of A */ 35 jmin = ai[k]; jmax = ai[k+1]; 36 if (jmin < jmax) { 37 ap = aa + jmin*25; 38 for (j = jmin; j < jmax; j++) { 39 vj = aj[j]; /* block col. index */ 40 rtmp_ptr = rtmp + vj*25; 41 for (i=0; i<25; i++) *rtmp_ptr++ = *ap++; 42 } 43 } 44 45 /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 46 ierr = PetscMemcpy(dk,rtmp+k*25,25*sizeof(MatScalar));CHKERRQ(ierr); 47 i = jl[k]; /* first row to be added to k_th row */ 48 49 while (i < mbs) { 50 nexti = jl[i]; /* next row to be added to k_th row */ 51 52 /* compute multiplier */ 53 ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 54 55 /* uik = -inv(Di)*U_bar(i,k) */ 56 d = ba + i*25; 57 u = ba + ili*25; 58 59 uik[0] = -(d[0]*u[0] + d[5]*u[1] + d[10]*u[2] + d[15]*u[3] + d[20]*u[4]); 60 uik[1] = -(d[1]*u[0] + d[6]*u[1] + d[11]*u[2] + d[16]*u[3] + d[21]*u[4]); 61 uik[2] = -(d[2]*u[0] + d[7]*u[1] + d[12]*u[2] + d[17]*u[3] + d[22]*u[4]); 62 uik[3] = -(d[3]*u[0] + d[8]*u[1] + d[13]*u[2] + d[18]*u[3] + d[23]*u[4]); 63 uik[4] = -(d[4]*u[0] + d[9]*u[1] + d[14]*u[2] + d[19]*u[3] + d[24]*u[4]); 64 65 uik[5] = -(d[0]*u[5] + d[5]*u[6] + d[10]*u[7] + d[15]*u[8] + d[20]*u[9]); 66 uik[6] = -(d[1]*u[5] + d[6]*u[6] + d[11]*u[7] + d[16]*u[8] + d[21]*u[9]); 67 uik[7] = -(d[2]*u[5] + d[7]*u[6] + d[12]*u[7] + d[17]*u[8] + d[22]*u[9]); 68 uik[8] = -(d[3]*u[5] + d[8]*u[6] + d[13]*u[7] + d[18]*u[8] + d[23]*u[9]); 69 uik[9] = -(d[4]*u[5] + d[9]*u[6] + d[14]*u[7] + d[19]*u[8] + d[24]*u[9]); 70 71 uik[10]= -(d[0]*u[10] + d[5]*u[11] + d[10]*u[12] + d[15]*u[13] + d[20]*u[14]); 72 uik[11]= -(d[1]*u[10] + d[6]*u[11] + d[11]*u[12] + d[16]*u[13] + d[21]*u[14]); 73 uik[12]= -(d[2]*u[10] + d[7]*u[11] + d[12]*u[12] + d[17]*u[13] + d[22]*u[14]); 74 uik[13]= -(d[3]*u[10] + d[8]*u[11] + d[13]*u[12] + d[18]*u[13] + d[23]*u[14]); 75 uik[14]= -(d[4]*u[10] + d[9]*u[11] + d[14]*u[12] + d[19]*u[13] + d[24]*u[14]); 76 77 uik[15]= -(d[0]*u[15] + d[5]*u[16] + d[10]*u[17] + d[15]*u[18] + d[20]*u[19]); 78 uik[16]= -(d[1]*u[15] + d[6]*u[16] + d[11]*u[17] + d[16]*u[18] + d[21]*u[19]); 79 uik[17]= -(d[2]*u[15] + d[7]*u[16] + d[12]*u[17] + d[17]*u[18] + d[22]*u[19]); 80 uik[18]= -(d[3]*u[15] + d[8]*u[16] + d[13]*u[17] + d[18]*u[18] + d[23]*u[19]); 81 uik[19]= -(d[4]*u[15] + d[9]*u[16] + d[14]*u[17] + d[19]*u[18] + d[24]*u[19]); 82 83 uik[20]= -(d[0]*u[20] + d[5]*u[21] + d[10]*u[22] + d[15]*u[23] + d[20]*u[24]); 84 uik[21]= -(d[1]*u[20] + d[6]*u[21] + d[11]*u[22] + d[16]*u[23] + d[21]*u[24]); 85 uik[22]= -(d[2]*u[20] + d[7]*u[21] + d[12]*u[22] + d[17]*u[23] + d[22]*u[24]); 86 uik[23]= -(d[3]*u[20] + d[8]*u[21] + d[13]*u[22] + d[18]*u[23] + d[23]*u[24]); 87 uik[24]= -(d[4]*u[20] + d[9]*u[21] + d[14]*u[22] + d[19]*u[23] + d[24]*u[24]); 88 89 90 /* update D(k) += -U(i,k)^T * U_bar(i,k) */ 91 dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4]; 92 dk[1] += uik[5]*u[0] + uik[6]*u[1] + uik[7]*u[2] + uik[8]*u[3] + uik[9]*u[4]; 93 dk[2] += uik[10]*u[0]+ uik[11]*u[1]+ uik[12]*u[2]+ uik[13]*u[3]+ uik[14]*u[4]; 94 dk[3] += uik[15]*u[0]+ uik[16]*u[1]+ uik[17]*u[2]+ uik[18]*u[3]+ uik[19]*u[4]; 95 dk[4] += uik[20]*u[0]+ uik[21]*u[1]+ uik[22]*u[2]+ uik[23]*u[3]+ uik[24]*u[4]; 96 97 dk[5] += uik[0]*u[5] + uik[1]*u[6] + uik[2]*u[7] + uik[3]*u[8] + uik[4]*u[9]; 98 dk[6] += uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]; 99 dk[7] += uik[10]*u[5]+ uik[11]*u[6]+ uik[12]*u[7]+ uik[13]*u[8]+ uik[14]*u[9]; 100 dk[8] += uik[15]*u[5]+ uik[16]*u[6]+ uik[17]*u[7]+ uik[18]*u[8]+ uik[19]*u[9]; 101 dk[9] += uik[20]*u[5]+ uik[21]*u[6]+ uik[22]*u[7]+ uik[23]*u[8]+ uik[24]*u[9]; 102 103 dk[10] += uik[0]*u[10] + uik[1]*u[11] + uik[2]*u[12] + uik[3]*u[13] + uik[4]*u[14]; 104 dk[11] += uik[5]*u[10] + uik[6]*u[11] + uik[7]*u[12] + uik[8]*u[13] + uik[9]*u[14]; 105 dk[12] += uik[10]*u[10]+ uik[11]*u[11]+ uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]; 106 dk[13] += uik[15]*u[10]+ uik[16]*u[11]+ uik[17]*u[12]+ uik[18]*u[13]+ uik[19]*u[14]; 107 dk[14] += uik[20]*u[10]+ uik[21]*u[11]+ uik[22]*u[12]+ uik[23]*u[13]+ uik[24]*u[14]; 108 109 dk[15] += uik[0]*u[15] + uik[1]*u[16] + uik[2]*u[17] + uik[3]*u[18] + uik[4]*u[19]; 110 dk[16] += uik[5]*u[15] + uik[6]*u[16] + uik[7]*u[17] + uik[8]*u[18] + uik[9]*u[19]; 111 dk[17] += uik[10]*u[15]+ uik[11]*u[16]+ uik[12]*u[17]+ uik[13]*u[18]+ uik[14]*u[19]; 112 dk[18] += uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]+ uik[18]*u[18]+ uik[19]*u[19]; 113 dk[19] += uik[20]*u[15]+ uik[21]*u[16]+ uik[22]*u[17]+ uik[23]*u[18]+ uik[24]*u[19]; 114 115 dk[20] += uik[0]*u[20] + uik[1]*u[21] + uik[2]*u[22] + uik[3]*u[23] + uik[4]*u[24]; 116 dk[21] += uik[5]*u[20] + uik[6]*u[21] + uik[7]*u[22] + uik[8]*u[23] + uik[9]*u[24]; 117 dk[22] += uik[10]*u[20]+ uik[11]*u[21]+ uik[12]*u[22]+ uik[13]*u[23]+ uik[14]*u[24]; 118 dk[23] += uik[15]*u[20]+ uik[16]*u[21]+ uik[17]*u[22]+ uik[18]*u[23]+ uik[19]*u[24]; 119 dk[24] += uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]+ uik[24]*u[24]; 120 121 ierr = PetscLogFlops(125.0*4.0);CHKERRQ(ierr); 122 123 /* update -U(i,k) */ 124 ierr = PetscMemcpy(ba+ili*25,uik,25*sizeof(MatScalar));CHKERRQ(ierr); 125 126 /* add multiple of row i to k-th row ... */ 127 jmin = ili + 1; jmax = bi[i+1]; 128 if (jmin < jmax) { 129 for (j=jmin; j<jmax; j++) { 130 /* rtmp += -U(i,k)^T * U_bar(i,j) */ 131 rtmp_ptr = rtmp + bj[j]*25; 132 u = ba + j*25; 133 rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4]; 134 rtmp_ptr[1] += uik[5]*u[0] + uik[6]*u[1] + uik[7]*u[2] + uik[8]*u[3] + uik[9]*u[4]; 135 rtmp_ptr[2] += uik[10]*u[0]+ uik[11]*u[1]+ uik[12]*u[2]+ uik[13]*u[3]+ uik[14]*u[4]; 136 rtmp_ptr[3] += uik[15]*u[0]+ uik[16]*u[1]+ uik[17]*u[2]+ uik[18]*u[3]+ uik[19]*u[4]; 137 rtmp_ptr[4] += uik[20]*u[0]+ uik[21]*u[1]+ uik[22]*u[2]+ uik[23]*u[3]+ uik[24]*u[4]; 138 139 rtmp_ptr[5] += uik[0]*u[5] + uik[1]*u[6] + uik[2]*u[7] + uik[3]*u[8] + uik[4]*u[9]; 140 rtmp_ptr[6] += uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]; 141 rtmp_ptr[7] += uik[10]*u[5]+ uik[11]*u[6]+ uik[12]*u[7]+ uik[13]*u[8]+ uik[14]*u[9]; 142 rtmp_ptr[8] += uik[15]*u[5]+ uik[16]*u[6]+ uik[17]*u[7]+ uik[18]*u[8]+ uik[19]*u[9]; 143 rtmp_ptr[9] += uik[20]*u[5]+ uik[21]*u[6]+ uik[22]*u[7]+ uik[23]*u[8]+ uik[24]*u[9]; 144 145 rtmp_ptr[10] += uik[0]*u[10] + uik[1]*u[11] + uik[2]*u[12] + uik[3]*u[13] + uik[4]*u[14]; 146 rtmp_ptr[11] += uik[5]*u[10] + uik[6]*u[11] + uik[7]*u[12] + uik[8]*u[13] + uik[9]*u[14]; 147 rtmp_ptr[12] += uik[10]*u[10]+ uik[11]*u[11]+ uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]; 148 rtmp_ptr[13] += uik[15]*u[10]+ uik[16]*u[11]+ uik[17]*u[12]+ uik[18]*u[13]+ uik[19]*u[14]; 149 rtmp_ptr[14] += uik[20]*u[10]+ uik[21]*u[11]+ uik[22]*u[12]+ uik[23]*u[13]+ uik[24]*u[14]; 150 151 rtmp_ptr[15] += uik[0]*u[15] + uik[1]*u[16] + uik[2]*u[17] + uik[3]*u[18] + uik[4]*u[19]; 152 rtmp_ptr[16] += uik[5]*u[15] + uik[6]*u[16] + uik[7]*u[17] + uik[8]*u[18] + uik[9]*u[19]; 153 rtmp_ptr[17] += uik[10]*u[15]+ uik[11]*u[16]+ uik[12]*u[17]+ uik[13]*u[18]+ uik[14]*u[19]; 154 rtmp_ptr[18] += uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]+ uik[18]*u[18]+ uik[19]*u[19]; 155 rtmp_ptr[19] += uik[20]*u[15]+ uik[21]*u[16]+ uik[22]*u[17]+ uik[23]*u[18]+ uik[24]*u[19]; 156 157 rtmp_ptr[20] += uik[0]*u[20] + uik[1]*u[21] + uik[2]*u[22] + uik[3]*u[23] + uik[4]*u[24]; 158 rtmp_ptr[21] += uik[5]*u[20] + uik[6]*u[21] + uik[7]*u[22] + uik[8]*u[23] + uik[9]*u[24]; 159 rtmp_ptr[22] += uik[10]*u[20]+ uik[11]*u[21]+ uik[12]*u[22]+ uik[13]*u[23]+ uik[14]*u[24]; 160 rtmp_ptr[23] += uik[15]*u[20]+ uik[16]*u[21]+ uik[17]*u[22]+ uik[18]*u[23]+ uik[19]*u[24]; 161 rtmp_ptr[24] += uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]+ uik[24]*u[24]; 162 } 163 ierr = PetscLogFlops(2.0*125.0*(jmax-jmin));CHKERRQ(ierr); 164 165 /* ... add i to row list for next nonzero entry */ 166 il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 167 j = bj[jmin]; 168 jl[i] = jl[j]; jl[j] = i; /* update jl */ 169 } 170 i = nexti; 171 } 172 173 /* save nonzero entries in k-th row of U ... */ 174 175 /* invert diagonal block */ 176 d = ba+k*25; 177 ierr = PetscMemcpy(d,dk,25*sizeof(MatScalar));CHKERRQ(ierr); 178 ierr = PetscKernel_A_gets_inverse_A_5(d,ipvt,work,shift);CHKERRQ(ierr); 179 180 jmin = bi[k]; jmax = bi[k+1]; 181 if (jmin < jmax) { 182 for (j=jmin; j<jmax; j++) { 183 vj = bj[j]; /* block col. index of U */ 184 u = ba + j*25; 185 rtmp_ptr = rtmp + vj*25; 186 for (k1=0; k1<25; k1++) { 187 *u++ = *rtmp_ptr; 188 *rtmp_ptr++ = 0.0; 189 } 190 } 191 192 /* ... add k to row list for first nonzero entry in k-th row */ 193 il[k] = jmin; 194 i = bj[jmin]; 195 jl[k] = jl[i]; jl[i] = k; 196 } 197 } 198 199 ierr = PetscFree(rtmp);CHKERRQ(ierr); 200 ierr = PetscFree2(il,jl);CHKERRQ(ierr); 201 ierr = PetscFree2(dk,uik);CHKERRQ(ierr); 202 203 C->ops->solve = MatSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 204 C->ops->solvetranspose = MatSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 205 C->ops->forwardsolve = MatForwardSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 206 C->ops->backwardsolve = MatBackwardSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 207 C->assembled = PETSC_TRUE; 208 C->preallocated = PETSC_TRUE; 209 ierr = PetscLogFlops(1.3333*125*b->mbs);CHKERRQ(ierr); /* from inverting diagonal blocks */ 210 PetscFunctionReturn(0); 211 } 212