1 #include <petsc/private/petscscalapack.h> /*I "petscmat.h" I*/ 2 3 #define DEFAULT_BLOCKSIZE 64 4 5 /* 6 The variable Petsc_ScaLAPACK_keyval is used to indicate an MPI attribute that 7 is attached to a communicator, in this case the attribute is a Mat_ScaLAPACK_Grid 8 */ 9 static PetscMPIInt Petsc_ScaLAPACK_keyval = MPI_KEYVAL_INVALID; 10 11 static PetscErrorCode MatView_ScaLAPACK(Mat A,PetscViewer viewer) 12 { 13 PetscErrorCode ierr; 14 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 15 PetscBool iascii; 16 PetscViewerFormat format; 17 Mat Adense; 18 19 PetscFunctionBegin; 20 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 21 if (iascii) { 22 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 23 if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 24 ierr = PetscViewerASCIIPrintf(viewer,"block sizes: %d,%d\n",(int)a->mb,(int)a->nb);CHKERRQ(ierr); 25 ierr = PetscViewerASCIIPrintf(viewer,"grid height=%d, grid width=%d\n",(int)a->grid->nprow,(int)a->grid->npcol);CHKERRQ(ierr); 26 ierr = PetscViewerASCIIPrintf(viewer,"coordinates of process owning first row and column: (%d,%d)\n",(int)a->rsrc,(int)a->csrc);CHKERRQ(ierr); 27 ierr = PetscViewerASCIIPrintf(viewer,"dimension of largest local matrix: %d x %d\n",(int)a->locr,(int)a->locc);CHKERRQ(ierr); 28 PetscFunctionReturn(0); 29 } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 30 PetscFunctionReturn(0); 31 } 32 } 33 /* convert to dense format and call MatView() */ 34 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 35 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 36 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 37 PetscFunctionReturn(0); 38 } 39 40 static PetscErrorCode MatGetInfo_ScaLAPACK(Mat A,MatInfoType flag,MatInfo *info) 41 { 42 PetscErrorCode ierr; 43 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 44 PetscLogDouble isend[2],irecv[2]; 45 46 PetscFunctionBegin; 47 info->block_size = 1.0; 48 49 isend[0] = a->lld*a->locc; /* locally allocated */ 50 isend[1] = a->locr*a->locc; /* used submatrix */ 51 if (flag == MAT_LOCAL || flag == MAT_GLOBAL_MAX) { 52 info->nz_allocated = isend[0]; 53 info->nz_used = isend[1]; 54 } else if (flag == MAT_GLOBAL_MAX) { 55 ierr = MPIU_Allreduce(isend,irecv,2,MPIU_PETSCLOGDOUBLE,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 56 info->nz_allocated = irecv[0]; 57 info->nz_used = irecv[1]; 58 } else if (flag == MAT_GLOBAL_SUM) { 59 ierr = MPIU_Allreduce(isend,irecv,2,MPIU_PETSCLOGDOUBLE,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 60 info->nz_allocated = irecv[0]; 61 info->nz_used = irecv[1]; 62 } 63 64 info->nz_unneeded = 0; 65 info->assemblies = A->num_ass; 66 info->mallocs = 0; 67 info->memory = ((PetscObject)A)->mem; 68 info->fill_ratio_given = 0; 69 info->fill_ratio_needed = 0; 70 info->factor_mallocs = 0; 71 PetscFunctionReturn(0); 72 } 73 74 PetscErrorCode MatSetOption_ScaLAPACK(Mat A,MatOption op,PetscBool flg) 75 { 76 PetscFunctionBegin; 77 switch (op) { 78 case MAT_NEW_NONZERO_LOCATIONS: 79 case MAT_NEW_NONZERO_LOCATION_ERR: 80 case MAT_NEW_NONZERO_ALLOCATION_ERR: 81 case MAT_SYMMETRIC: 82 case MAT_SORTED_FULL: 83 case MAT_HERMITIAN: 84 break; 85 default: 86 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported option %s",MatOptions[op]); 87 } 88 PetscFunctionReturn(0); 89 } 90 91 static PetscErrorCode MatSetValues_ScaLAPACK(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 92 { 93 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 94 PetscErrorCode ierr; 95 PetscInt i,j; 96 PetscBLASInt gridx,gcidx,lridx,lcidx,rsrc,csrc; 97 98 PetscFunctionBegin; 99 for (i=0;i<nr;i++) { 100 if (rows[i] < 0) continue; 101 ierr = PetscBLASIntCast(rows[i]+1,&gridx);CHKERRQ(ierr); 102 for (j=0;j<nc;j++) { 103 if (cols[j] < 0) continue; 104 ierr = PetscBLASIntCast(cols[j]+1,&gcidx);CHKERRQ(ierr); 105 PetscStackCallBLAS("SCALAPACKinfog2l",SCALAPACKinfog2l_(&gridx,&gcidx,a->desc,&a->grid->nprow,&a->grid->npcol,&a->grid->myrow,&a->grid->mycol,&lridx,&lcidx,&rsrc,&csrc)); 106 if (rsrc==a->grid->myrow && csrc==a->grid->mycol) { 107 switch (imode) { 108 case INSERT_VALUES: a->loc[lridx-1+(lcidx-1)*a->lld] = vals[i*nc+j]; break; 109 case ADD_VALUES: a->loc[lridx-1+(lcidx-1)*a->lld] += vals[i*nc+j]; break; 110 default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 111 } 112 } else { 113 if (A->nooffprocentries) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process entry even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set"); 114 A->assembled = PETSC_FALSE; 115 ierr = MatStashValuesRow_Private(&A->stash,rows[i],1,cols+j,vals+i*nc+j,(PetscBool)(imode==ADD_VALUES));CHKERRQ(ierr); 116 } 117 } 118 } 119 PetscFunctionReturn(0); 120 } 121 122 static PetscErrorCode MatMultXXXYYY_ScaLAPACK(Mat A,PetscBool transpose,PetscScalar beta,const PetscScalar *x,PetscScalar *y) 123 { 124 PetscErrorCode ierr; 125 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 126 PetscScalar *x2d,*y2d,alpha=1.0; 127 const PetscInt *ranges; 128 PetscBLASInt xdesc[9],ydesc[9],x2desc[9],y2desc[9],mb,nb,lszx,lszy,zero=0,one=1,xlld,ylld,info; 129 130 PetscFunctionBegin; 131 if (transpose) { 132 133 /* create ScaLAPACK descriptors for vectors (1d block distribution) */ 134 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 135 ierr = PetscBLASIntCast(ranges[1],&mb);CHKERRQ(ierr); /* x block size */ 136 xlld = PetscMax(1,A->rmap->n); 137 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(xdesc,&a->M,&one,&mb,&one,&zero,&zero,&a->grid->ictxcol,&xlld,&info)); 138 PetscCheckScaLapackInfo("descinit",info); 139 ierr = PetscLayoutGetRanges(A->cmap,&ranges);CHKERRQ(ierr); 140 ierr = PetscBLASIntCast(ranges[1],&nb);CHKERRQ(ierr); /* y block size */ 141 ylld = 1; 142 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(ydesc,&one,&a->N,&one,&nb,&zero,&zero,&a->grid->ictxrow,&ylld,&info)); 143 PetscCheckScaLapackInfo("descinit",info); 144 145 /* allocate 2d vectors */ 146 lszx = SCALAPACKnumroc_(&a->M,&a->mb,&a->grid->myrow,&a->rsrc,&a->grid->nprow); 147 lszy = SCALAPACKnumroc_(&a->N,&a->nb,&a->grid->mycol,&a->csrc,&a->grid->npcol); 148 ierr = PetscMalloc2(lszx,&x2d,lszy,&y2d);CHKERRQ(ierr); 149 xlld = PetscMax(1,lszx); 150 151 /* create ScaLAPACK descriptors for vectors (2d block distribution) */ 152 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(x2desc,&a->M,&one,&a->mb,&one,&zero,&zero,&a->grid->ictxt,&xlld,&info)); 153 PetscCheckScaLapackInfo("descinit",info); 154 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(y2desc,&one,&a->N,&one,&a->nb,&zero,&zero,&a->grid->ictxt,&ylld,&info)); 155 PetscCheckScaLapackInfo("descinit",info); 156 157 /* redistribute x as a column of a 2d matrix */ 158 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,(PetscScalar*)x,&one,&one,xdesc,x2d,&one,&one,x2desc,&a->grid->ictxcol)); 159 160 /* redistribute y as a row of a 2d matrix */ 161 if (beta!=0.0) PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&one,&a->N,y,&one,&one,ydesc,y2d,&one,&one,y2desc,&a->grid->ictxrow)); 162 163 /* call PBLAS subroutine */ 164 PetscStackCallBLAS("PBLASgemv",PBLASgemv_("T",&a->M,&a->N,&alpha,a->loc,&one,&one,a->desc,x2d,&one,&one,x2desc,&one,&beta,y2d,&one,&one,y2desc,&one)); 165 166 /* redistribute y from a row of a 2d matrix */ 167 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&one,&a->N,y2d,&one,&one,y2desc,y,&one,&one,ydesc,&a->grid->ictxrow)); 168 169 } else { /* non-transpose */ 170 171 /* create ScaLAPACK descriptors for vectors (1d block distribution) */ 172 ierr = PetscLayoutGetRanges(A->cmap,&ranges);CHKERRQ(ierr); 173 ierr = PetscBLASIntCast(ranges[1],&nb);CHKERRQ(ierr); /* x block size */ 174 xlld = 1; 175 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(xdesc,&one,&a->N,&one,&nb,&zero,&zero,&a->grid->ictxrow,&xlld,&info)); 176 PetscCheckScaLapackInfo("descinit",info); 177 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 178 ierr = PetscBLASIntCast(ranges[1],&mb);CHKERRQ(ierr); /* y block size */ 179 ylld = PetscMax(1,A->rmap->n); 180 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(ydesc,&a->M,&one,&mb,&one,&zero,&zero,&a->grid->ictxcol,&ylld,&info)); 181 PetscCheckScaLapackInfo("descinit",info); 182 183 /* allocate 2d vectors */ 184 lszy = SCALAPACKnumroc_(&a->M,&a->mb,&a->grid->myrow,&a->rsrc,&a->grid->nprow); 185 lszx = SCALAPACKnumroc_(&a->N,&a->nb,&a->grid->mycol,&a->csrc,&a->grid->npcol); 186 ierr = PetscMalloc2(lszx,&x2d,lszy,&y2d);CHKERRQ(ierr); 187 ylld = PetscMax(1,lszy); 188 189 /* create ScaLAPACK descriptors for vectors (2d block distribution) */ 190 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(x2desc,&one,&a->N,&one,&a->nb,&zero,&zero,&a->grid->ictxt,&xlld,&info)); 191 PetscCheckScaLapackInfo("descinit",info); 192 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(y2desc,&a->M,&one,&a->mb,&one,&zero,&zero,&a->grid->ictxt,&ylld,&info)); 193 PetscCheckScaLapackInfo("descinit",info); 194 195 /* redistribute x as a row of a 2d matrix */ 196 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&one,&a->N,(PetscScalar*)x,&one,&one,xdesc,x2d,&one,&one,x2desc,&a->grid->ictxrow)); 197 198 /* redistribute y as a column of a 2d matrix */ 199 if (beta!=0.0) PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,y,&one,&one,ydesc,y2d,&one,&one,y2desc,&a->grid->ictxcol)); 200 201 /* call PBLAS subroutine */ 202 PetscStackCallBLAS("PBLASgemv",PBLASgemv_("N",&a->M,&a->N,&alpha,a->loc,&one,&one,a->desc,x2d,&one,&one,x2desc,&one,&beta,y2d,&one,&one,y2desc,&one)); 203 204 /* redistribute y from a column of a 2d matrix */ 205 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,y2d,&one,&one,y2desc,y,&one,&one,ydesc,&a->grid->ictxcol)); 206 207 } 208 ierr = PetscFree2(x2d,y2d);CHKERRQ(ierr); 209 PetscFunctionReturn(0); 210 } 211 212 static PetscErrorCode MatMult_ScaLAPACK(Mat A,Vec x,Vec y) 213 { 214 PetscErrorCode ierr; 215 const PetscScalar *xarray; 216 PetscScalar *yarray; 217 218 PetscFunctionBegin; 219 ierr = VecGetArrayRead(x,&xarray);CHKERRQ(ierr); 220 ierr = VecGetArray(y,&yarray);CHKERRQ(ierr); 221 ierr = MatMultXXXYYY_ScaLAPACK(A,PETSC_FALSE,0.0,xarray,yarray);CHKERRQ(ierr); 222 ierr = VecRestoreArrayRead(x,&xarray);CHKERRQ(ierr); 223 ierr = VecRestoreArray(y,&yarray);CHKERRQ(ierr); 224 PetscFunctionReturn(0); 225 } 226 227 static PetscErrorCode MatMultTranspose_ScaLAPACK(Mat A,Vec x,Vec y) 228 { 229 PetscErrorCode ierr; 230 const PetscScalar *xarray; 231 PetscScalar *yarray; 232 233 PetscFunctionBegin; 234 ierr = VecGetArrayRead(x,&xarray);CHKERRQ(ierr); 235 ierr = VecGetArray(y,&yarray);CHKERRQ(ierr); 236 ierr = MatMultXXXYYY_ScaLAPACK(A,PETSC_TRUE,0.0,xarray,yarray);CHKERRQ(ierr); 237 ierr = VecRestoreArrayRead(x,&xarray);CHKERRQ(ierr); 238 ierr = VecRestoreArray(y,&yarray);CHKERRQ(ierr); 239 PetscFunctionReturn(0); 240 } 241 242 static PetscErrorCode MatMultAdd_ScaLAPACK(Mat A,Vec x,Vec y,Vec z) 243 { 244 PetscErrorCode ierr; 245 const PetscScalar *xarray; 246 PetscScalar *zarray; 247 248 PetscFunctionBegin; 249 if (y != z) { ierr = VecCopy(y,z);CHKERRQ(ierr); } 250 ierr = VecGetArrayRead(x,&xarray);CHKERRQ(ierr); 251 ierr = VecGetArray(z,&zarray);CHKERRQ(ierr); 252 ierr = MatMultXXXYYY_ScaLAPACK(A,PETSC_FALSE,1.0,xarray,zarray);CHKERRQ(ierr); 253 ierr = VecRestoreArrayRead(x,&xarray);CHKERRQ(ierr); 254 ierr = VecRestoreArray(z,&zarray);CHKERRQ(ierr); 255 PetscFunctionReturn(0); 256 } 257 258 static PetscErrorCode MatMultTransposeAdd_ScaLAPACK(Mat A,Vec x,Vec y,Vec z) 259 { 260 PetscErrorCode ierr; 261 const PetscScalar *xarray; 262 PetscScalar *zarray; 263 264 PetscFunctionBegin; 265 if (y != z) { ierr = VecCopy(y,z);CHKERRQ(ierr); } 266 ierr = VecGetArrayRead(x,&xarray);CHKERRQ(ierr); 267 ierr = VecGetArray(z,&zarray);CHKERRQ(ierr); 268 ierr = MatMultXXXYYY_ScaLAPACK(A,PETSC_TRUE,1.0,xarray,zarray);CHKERRQ(ierr); 269 ierr = VecRestoreArrayRead(x,&xarray);CHKERRQ(ierr); 270 ierr = VecRestoreArray(z,&zarray);CHKERRQ(ierr); 271 PetscFunctionReturn(0); 272 } 273 274 PetscErrorCode MatMatMultNumeric_ScaLAPACK(Mat A,Mat B,Mat C) 275 { 276 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 277 Mat_ScaLAPACK *b = (Mat_ScaLAPACK*)B->data; 278 Mat_ScaLAPACK *c = (Mat_ScaLAPACK*)C->data; 279 PetscScalar sone=1.0,zero=0.0; 280 PetscBLASInt one=1; 281 282 PetscFunctionBegin; 283 PetscStackCallBLAS("PBLASgemm",PBLASgemm_("N","N",&a->M,&b->N,&a->N,&sone,a->loc,&one,&one,a->desc,b->loc,&one,&one,b->desc,&zero,c->loc,&one,&one,c->desc)); 284 C->assembled = PETSC_TRUE; 285 PetscFunctionReturn(0); 286 } 287 288 PetscErrorCode MatMatMultSymbolic_ScaLAPACK(Mat A,Mat B,PetscReal fill,Mat C) 289 { 290 PetscErrorCode ierr; 291 292 PetscFunctionBegin; 293 ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 294 ierr = MatSetType(C,MATSCALAPACK);CHKERRQ(ierr); 295 ierr = MatSetUp(C);CHKERRQ(ierr); 296 C->ops->matmultnumeric = MatMatMultNumeric_ScaLAPACK; 297 PetscFunctionReturn(0); 298 } 299 300 static PetscErrorCode MatMatTransposeMultNumeric_ScaLAPACK(Mat A,Mat B,Mat C) 301 { 302 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 303 Mat_ScaLAPACK *b = (Mat_ScaLAPACK*)B->data; 304 Mat_ScaLAPACK *c = (Mat_ScaLAPACK*)C->data; 305 PetscScalar sone=1.0,zero=0.0; 306 PetscBLASInt one=1; 307 308 PetscFunctionBegin; 309 PetscStackCallBLAS("PBLASgemm",PBLASgemm_("N","T",&a->M,&b->M,&a->N,&sone,a->loc,&one,&one,a->desc,b->loc,&one,&one,b->desc,&zero,c->loc,&one,&one,c->desc)); 310 C->assembled = PETSC_TRUE; 311 PetscFunctionReturn(0); 312 } 313 314 static PetscErrorCode MatMatTransposeMultSymbolic_ScaLAPACK(Mat A,Mat B,PetscReal fill,Mat C) 315 { 316 PetscErrorCode ierr; 317 318 PetscFunctionBegin; 319 ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 320 ierr = MatSetType(C,MATSCALAPACK);CHKERRQ(ierr); 321 ierr = MatSetUp(C);CHKERRQ(ierr); 322 PetscFunctionReturn(0); 323 } 324 325 /* --------------------------------------- */ 326 static PetscErrorCode MatProductSetFromOptions_ScaLAPACK_AB(Mat C) 327 { 328 PetscFunctionBegin; 329 C->ops->matmultsymbolic = MatMatMultSymbolic_ScaLAPACK; 330 C->ops->productsymbolic = MatProductSymbolic_AB; 331 PetscFunctionReturn(0); 332 } 333 334 static PetscErrorCode MatProductSetFromOptions_ScaLAPACK_ABt(Mat C) 335 { 336 PetscFunctionBegin; 337 C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_ScaLAPACK; 338 C->ops->productsymbolic = MatProductSymbolic_ABt; 339 PetscFunctionReturn(0); 340 } 341 342 PETSC_INTERN PetscErrorCode MatProductSetFromOptions_ScaLAPACK(Mat C) 343 { 344 PetscErrorCode ierr; 345 Mat_Product *product = C->product; 346 347 PetscFunctionBegin; 348 switch (product->type) { 349 case MATPRODUCT_AB: 350 ierr = MatProductSetFromOptions_ScaLAPACK_AB(C);CHKERRQ(ierr); 351 break; 352 case MATPRODUCT_ABt: 353 ierr = MatProductSetFromOptions_ScaLAPACK_ABt(C);CHKERRQ(ierr); 354 break; 355 default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for ScaLAPACK and ScaLAPACK matrices",MatProductTypes[product->type]); 356 } 357 PetscFunctionReturn(0); 358 } 359 /* --------------------------------------- */ 360 361 static PetscErrorCode MatGetDiagonal_ScaLAPACK(Mat A,Vec D) 362 { 363 PetscErrorCode ierr; 364 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 365 PetscScalar *darray,*d2d,v; 366 const PetscInt *ranges; 367 PetscBLASInt j,ddesc[9],d2desc[9],mb,nb,lszd,zero=0,one=1,dlld,info; 368 369 PetscFunctionBegin; 370 ierr = VecGetArray(D,&darray);CHKERRQ(ierr); 371 372 if (A->rmap->N<=A->cmap->N) { /* row version */ 373 374 /* create ScaLAPACK descriptor for vector (1d block distribution) */ 375 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 376 ierr = PetscBLASIntCast(ranges[1],&mb);CHKERRQ(ierr); /* D block size */ 377 dlld = PetscMax(1,A->rmap->n); 378 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(ddesc,&a->M,&one,&mb,&one,&zero,&zero,&a->grid->ictxcol,&dlld,&info)); 379 PetscCheckScaLapackInfo("descinit",info); 380 381 /* allocate 2d vector */ 382 lszd = SCALAPACKnumroc_(&a->M,&a->mb,&a->grid->myrow,&a->rsrc,&a->grid->nprow); 383 ierr = PetscCalloc1(lszd,&d2d);CHKERRQ(ierr); 384 dlld = PetscMax(1,lszd); 385 386 /* create ScaLAPACK descriptor for vector (2d block distribution) */ 387 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(d2desc,&a->M,&one,&a->mb,&one,&zero,&zero,&a->grid->ictxt,&dlld,&info)); 388 PetscCheckScaLapackInfo("descinit",info); 389 390 /* collect diagonal */ 391 for (j=1;j<=a->M;j++) { 392 PetscStackCallBLAS("SCALAPACKelget",SCALAPACKelget_("R"," ",&v,a->loc,&j,&j,a->desc)); 393 PetscStackCallBLAS("SCALAPACKelset",SCALAPACKelset_(d2d,&j,&one,d2desc,&v)); 394 } 395 396 /* redistribute d from a column of a 2d matrix */ 397 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,d2d,&one,&one,d2desc,darray,&one,&one,ddesc,&a->grid->ictxcol)); 398 ierr = PetscFree(d2d);CHKERRQ(ierr); 399 400 } else { /* column version */ 401 402 /* create ScaLAPACK descriptor for vector (1d block distribution) */ 403 ierr = PetscLayoutGetRanges(A->cmap,&ranges);CHKERRQ(ierr); 404 ierr = PetscBLASIntCast(ranges[1],&nb);CHKERRQ(ierr); /* D block size */ 405 dlld = 1; 406 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(ddesc,&one,&a->N,&one,&nb,&zero,&zero,&a->grid->ictxrow,&dlld,&info)); 407 PetscCheckScaLapackInfo("descinit",info); 408 409 /* allocate 2d vector */ 410 lszd = SCALAPACKnumroc_(&a->N,&a->nb,&a->grid->mycol,&a->csrc,&a->grid->npcol); 411 ierr = PetscCalloc1(lszd,&d2d);CHKERRQ(ierr); 412 413 /* create ScaLAPACK descriptor for vector (2d block distribution) */ 414 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(d2desc,&one,&a->N,&one,&a->nb,&zero,&zero,&a->grid->ictxt,&dlld,&info)); 415 PetscCheckScaLapackInfo("descinit",info); 416 417 /* collect diagonal */ 418 for (j=1;j<=a->N;j++) { 419 PetscStackCallBLAS("SCALAPACKelget",SCALAPACKelget_("C"," ",&v,a->loc,&j,&j,a->desc)); 420 PetscStackCallBLAS("SCALAPACKelset",SCALAPACKelset_(d2d,&one,&j,d2desc,&v)); 421 } 422 423 /* redistribute d from a row of a 2d matrix */ 424 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&one,&a->N,d2d,&one,&one,d2desc,darray,&one,&one,ddesc,&a->grid->ictxrow)); 425 ierr = PetscFree(d2d);CHKERRQ(ierr); 426 } 427 428 ierr = VecRestoreArray(D,&darray);CHKERRQ(ierr); 429 ierr = VecAssemblyBegin(D);CHKERRQ(ierr); 430 ierr = VecAssemblyEnd(D);CHKERRQ(ierr); 431 PetscFunctionReturn(0); 432 } 433 434 static PetscErrorCode MatDiagonalScale_ScaLAPACK(Mat A,Vec L,Vec R) 435 { 436 PetscErrorCode ierr; 437 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 438 const PetscScalar *d; 439 const PetscInt *ranges; 440 PetscScalar *d2d; 441 PetscBLASInt i,j,ddesc[9],d2desc[9],mb,nb,lszd,zero=0,one=1,dlld,info; 442 443 PetscFunctionBegin; 444 if (R) { 445 ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 446 /* create ScaLAPACK descriptor for vector (1d block distribution) */ 447 ierr = PetscLayoutGetRanges(A->cmap,&ranges);CHKERRQ(ierr); 448 ierr = PetscBLASIntCast(ranges[1],&nb);CHKERRQ(ierr); /* D block size */ 449 dlld = 1; 450 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(ddesc,&one,&a->N,&one,&nb,&zero,&zero,&a->grid->ictxrow,&dlld,&info)); 451 PetscCheckScaLapackInfo("descinit",info); 452 453 /* allocate 2d vector */ 454 lszd = SCALAPACKnumroc_(&a->N,&a->nb,&a->grid->mycol,&a->csrc,&a->grid->npcol); 455 ierr = PetscCalloc1(lszd,&d2d);CHKERRQ(ierr); 456 457 /* create ScaLAPACK descriptor for vector (2d block distribution) */ 458 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(d2desc,&one,&a->N,&one,&a->nb,&zero,&zero,&a->grid->ictxt,&dlld,&info)); 459 PetscCheckScaLapackInfo("descinit",info); 460 461 /* redistribute d to a row of a 2d matrix */ 462 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&one,&a->N,(PetscScalar*)d,&one,&one,ddesc,d2d,&one,&one,d2desc,&a->grid->ictxrow)); 463 464 /* broadcast along process columns */ 465 if (!a->grid->myrow) Cdgebs2d(a->grid->ictxt,"C"," ",1,lszd,d2d,dlld); 466 else Cdgebr2d(a->grid->ictxt,"C"," ",1,lszd,d2d,dlld,0,a->grid->mycol); 467 468 /* local scaling */ 469 for (j=0;j<a->locc;j++) for (i=0;i<a->locr;i++) a->loc[i+j*a->lld] *= d2d[j]; 470 471 ierr = PetscFree(d2d);CHKERRQ(ierr); 472 ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 473 } 474 if (L) { 475 ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 476 /* create ScaLAPACK descriptor for vector (1d block distribution) */ 477 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 478 ierr = PetscBLASIntCast(ranges[1],&mb);CHKERRQ(ierr); /* D block size */ 479 dlld = PetscMax(1,A->rmap->n); 480 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(ddesc,&a->M,&one,&mb,&one,&zero,&zero,&a->grid->ictxcol,&dlld,&info)); 481 PetscCheckScaLapackInfo("descinit",info); 482 483 /* allocate 2d vector */ 484 lszd = SCALAPACKnumroc_(&a->M,&a->mb,&a->grid->myrow,&a->rsrc,&a->grid->nprow); 485 ierr = PetscCalloc1(lszd,&d2d);CHKERRQ(ierr); 486 dlld = PetscMax(1,lszd); 487 488 /* create ScaLAPACK descriptor for vector (2d block distribution) */ 489 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(d2desc,&a->M,&one,&a->mb,&one,&zero,&zero,&a->grid->ictxt,&dlld,&info)); 490 PetscCheckScaLapackInfo("descinit",info); 491 492 /* redistribute d to a column of a 2d matrix */ 493 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,(PetscScalar*)d,&one,&one,ddesc,d2d,&one,&one,d2desc,&a->grid->ictxcol)); 494 495 /* broadcast along process rows */ 496 if (!a->grid->mycol) Cdgebs2d(a->grid->ictxt,"R"," ",lszd,1,d2d,dlld); 497 else Cdgebr2d(a->grid->ictxt,"R"," ",lszd,1,d2d,dlld,a->grid->myrow,0); 498 499 /* local scaling */ 500 for (i=0;i<a->locr;i++) for (j=0;j<a->locc;j++) a->loc[i+j*a->lld] *= d2d[i]; 501 502 ierr = PetscFree(d2d);CHKERRQ(ierr); 503 ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 504 } 505 PetscFunctionReturn(0); 506 } 507 508 static PetscErrorCode MatMissingDiagonal_ScaLAPACK(Mat A,PetscBool *missing,PetscInt *d) 509 { 510 PetscFunctionBegin; 511 *missing = PETSC_FALSE; 512 PetscFunctionReturn(0); 513 } 514 515 static PetscErrorCode MatScale_ScaLAPACK(Mat X,PetscScalar a) 516 { 517 Mat_ScaLAPACK *x = (Mat_ScaLAPACK*)X->data; 518 PetscBLASInt n,one=1; 519 520 PetscFunctionBegin; 521 n = x->lld*x->locc; 522 PetscStackCallBLAS("BLASscal",BLASscal_(&n,&a,x->loc,&one)); 523 PetscFunctionReturn(0); 524 } 525 526 static PetscErrorCode MatShift_ScaLAPACK(Mat X,PetscScalar alpha) 527 { 528 Mat_ScaLAPACK *x = (Mat_ScaLAPACK*)X->data; 529 PetscBLASInt i,n; 530 PetscScalar v; 531 532 PetscFunctionBegin; 533 n = PetscMin(x->M,x->N); 534 for (i=1;i<=n;i++) { 535 PetscStackCallBLAS("SCALAPACKelget",SCALAPACKelget_("-"," ",&v,x->loc,&i,&i,x->desc)); 536 v += alpha; 537 PetscStackCallBLAS("SCALAPACKelset",SCALAPACKelset_(x->loc,&i,&i,x->desc,&v)); 538 } 539 PetscFunctionReturn(0); 540 } 541 542 static PetscErrorCode MatAXPY_ScaLAPACK(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 543 { 544 PetscErrorCode ierr; 545 Mat_ScaLAPACK *x = (Mat_ScaLAPACK*)X->data; 546 Mat_ScaLAPACK *y = (Mat_ScaLAPACK*)Y->data; 547 PetscBLASInt one=1; 548 PetscScalar beta=1.0; 549 550 PetscFunctionBegin; 551 MatScaLAPACKCheckDistribution(Y,1,X,3); 552 PetscStackCallBLAS("SCALAPACKmatadd",SCALAPACKmatadd_(&x->M,&x->N,&alpha,x->loc,&one,&one,x->desc,&beta,y->loc,&one,&one,y->desc)); 553 ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 554 PetscFunctionReturn(0); 555 } 556 557 static PetscErrorCode MatCopy_ScaLAPACK(Mat A,Mat B,MatStructure str) 558 { 559 PetscErrorCode ierr; 560 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 561 Mat_ScaLAPACK *b = (Mat_ScaLAPACK*)B->data; 562 563 PetscFunctionBegin; 564 ierr = PetscArraycpy(b->loc,a->loc,a->lld*a->locc);CHKERRQ(ierr); 565 ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 566 PetscFunctionReturn(0); 567 } 568 569 static PetscErrorCode MatDuplicate_ScaLAPACK(Mat A,MatDuplicateOption op,Mat *B) 570 { 571 Mat Bs; 572 MPI_Comm comm; 573 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data,*b; 574 PetscErrorCode ierr; 575 576 PetscFunctionBegin; 577 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 578 ierr = MatCreate(comm,&Bs);CHKERRQ(ierr); 579 ierr = MatSetSizes(Bs,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 580 ierr = MatSetType(Bs,MATSCALAPACK);CHKERRQ(ierr); 581 b = (Mat_ScaLAPACK*)Bs->data; 582 b->M = a->M; 583 b->N = a->N; 584 b->mb = a->mb; 585 b->nb = a->nb; 586 b->rsrc = a->rsrc; 587 b->csrc = a->csrc; 588 ierr = MatSetUp(Bs);CHKERRQ(ierr); 589 *B = Bs; 590 if (op == MAT_COPY_VALUES) { 591 ierr = PetscArraycpy(b->loc,a->loc,a->lld*a->locc);CHKERRQ(ierr); 592 } 593 Bs->assembled = PETSC_TRUE; 594 PetscFunctionReturn(0); 595 } 596 597 static PetscErrorCode MatTranspose_ScaLAPACK(Mat A,MatReuse reuse,Mat *B) 598 { 599 PetscErrorCode ierr; 600 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data, *b; 601 Mat Bs = *B; 602 PetscBLASInt one=1; 603 PetscScalar sone=1.0,zero=0.0; 604 #if defined(PETSC_USE_COMPLEX) 605 PetscInt i,j; 606 #endif 607 608 PetscFunctionBegin; 609 if (reuse == MAT_INITIAL_MATRIX) { 610 ierr = MatCreate(PetscObjectComm((PetscObject)A),&Bs);CHKERRQ(ierr); 611 ierr = MatSetSizes(Bs,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 612 ierr = MatSetType(Bs,MATSCALAPACK);CHKERRQ(ierr); 613 ierr = MatSetUp(Bs);CHKERRQ(ierr); 614 *B = Bs; 615 } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only MAT_INITIAL_MATRIX supported"); 616 b = (Mat_ScaLAPACK*)Bs->data; 617 PetscStackCallBLAS("PBLAStran",PBLAStran_(&a->N,&a->M,&sone,a->loc,&one,&one,a->desc,&zero,b->loc,&one,&one,b->desc)); 618 #if defined(PETSC_USE_COMPLEX) 619 /* undo conjugation */ 620 for (i=0;i<b->locr;i++) for (j=0;j<b->locc;j++) b->loc[i+j*b->lld] = PetscConj(b->loc[i+j*b->lld]); 621 #endif 622 Bs->assembled = PETSC_TRUE; 623 PetscFunctionReturn(0); 624 } 625 626 static PetscErrorCode MatConjugate_ScaLAPACK(Mat A) 627 { 628 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 629 PetscInt i,j; 630 631 PetscFunctionBegin; 632 for (i=0;i<a->locr;i++) for (j=0;j<a->locc;j++) a->loc[i+j*a->lld] = PetscConj(a->loc[i+j*a->lld]); 633 PetscFunctionReturn(0); 634 } 635 636 static PetscErrorCode MatHermitianTranspose_ScaLAPACK(Mat A,MatReuse reuse,Mat *B) 637 { 638 PetscErrorCode ierr; 639 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data, *b; 640 Mat Bs = *B; 641 PetscBLASInt one=1; 642 PetscScalar sone=1.0,zero=0.0; 643 644 PetscFunctionBegin; 645 if (reuse == MAT_INITIAL_MATRIX) { 646 ierr = MatCreate(PetscObjectComm((PetscObject)A),&Bs);CHKERRQ(ierr); 647 ierr = MatSetSizes(Bs,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 648 ierr = MatSetType(Bs,MATSCALAPACK);CHKERRQ(ierr); 649 ierr = MatSetUp(Bs);CHKERRQ(ierr); 650 *B = Bs; 651 } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Only MAT_INITIAL_MATRIX supported"); 652 b = (Mat_ScaLAPACK*)Bs->data; 653 PetscStackCallBLAS("PBLAStran",PBLAStran_(&a->N,&a->M,&sone,a->loc,&one,&one,a->desc,&zero,b->loc,&one,&one,b->desc)); 654 Bs->assembled = PETSC_TRUE; 655 PetscFunctionReturn(0); 656 } 657 658 static PetscErrorCode MatSolve_ScaLAPACK(Mat A,Vec B,Vec X) 659 { 660 PetscErrorCode ierr; 661 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 662 PetscScalar *x,*x2d; 663 const PetscInt *ranges; 664 PetscBLASInt xdesc[9],x2desc[9],mb,lszx,zero=0,one=1,xlld,nrhs=1,info; 665 666 PetscFunctionBegin; 667 ierr = VecCopy(B,X);CHKERRQ(ierr); 668 ierr = VecGetArray(X,&x);CHKERRQ(ierr); 669 670 /* create ScaLAPACK descriptor for a vector (1d block distribution) */ 671 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 672 ierr = PetscBLASIntCast(ranges[1],&mb);CHKERRQ(ierr); /* x block size */ 673 xlld = PetscMax(1,A->rmap->n); 674 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(xdesc,&a->M,&one,&mb,&one,&zero,&zero,&a->grid->ictxcol,&xlld,&info)); 675 PetscCheckScaLapackInfo("descinit",info); 676 677 /* allocate 2d vector */ 678 lszx = SCALAPACKnumroc_(&a->M,&a->mb,&a->grid->myrow,&a->rsrc,&a->grid->nprow); 679 ierr = PetscMalloc1(lszx,&x2d);CHKERRQ(ierr); 680 xlld = PetscMax(1,lszx); 681 682 /* create ScaLAPACK descriptor for a vector (2d block distribution) */ 683 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(x2desc,&a->M,&one,&a->mb,&one,&zero,&zero,&a->grid->ictxt,&xlld,&info)); 684 PetscCheckScaLapackInfo("descinit",info); 685 686 /* redistribute x as a column of a 2d matrix */ 687 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,x,&one,&one,xdesc,x2d,&one,&one,x2desc,&a->grid->ictxcol)); 688 689 /* call ScaLAPACK subroutine */ 690 switch (A->factortype) { 691 case MAT_FACTOR_LU: 692 PetscStackCallBLAS("SCALAPACKgetrs",SCALAPACKgetrs_("N",&a->M,&nrhs,a->loc,&one,&one,a->desc,a->pivots,x2d,&one,&one,x2desc,&info)); 693 PetscCheckScaLapackInfo("getrs",info); 694 break; 695 case MAT_FACTOR_CHOLESKY: 696 PetscStackCallBLAS("SCALAPACKpotrs",SCALAPACKpotrs_("L",&a->M,&nrhs,a->loc,&one,&one,a->desc,x2d,&one,&one,x2desc,&info)); 697 PetscCheckScaLapackInfo("potrs",info); 698 break; 699 default: 700 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 701 break; 702 } 703 704 /* redistribute x from a column of a 2d matrix */ 705 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&one,x2d,&one,&one,x2desc,x,&one,&one,xdesc,&a->grid->ictxcol)); 706 707 ierr = PetscFree(x2d);CHKERRQ(ierr); 708 ierr = VecRestoreArray(X,&x);CHKERRQ(ierr); 709 PetscFunctionReturn(0); 710 } 711 712 static PetscErrorCode MatSolveAdd_ScaLAPACK(Mat A,Vec B,Vec Y,Vec X) 713 { 714 PetscErrorCode ierr; 715 716 PetscFunctionBegin; 717 ierr = MatSolve_ScaLAPACK(A,B,X);CHKERRQ(ierr); 718 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 719 PetscFunctionReturn(0); 720 } 721 722 static PetscErrorCode MatMatSolve_ScaLAPACK(Mat A,Mat B,Mat X) 723 { 724 PetscErrorCode ierr; 725 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data,*b,*x; 726 PetscBool flg1,flg2; 727 PetscBLASInt one=1,info; 728 729 PetscFunctionBegin; 730 ierr = PetscObjectTypeCompare((PetscObject)B,MATSCALAPACK,&flg1);CHKERRQ(ierr); 731 ierr = PetscObjectTypeCompare((PetscObject)X,MATSCALAPACK,&flg2);CHKERRQ(ierr); 732 if (!(flg1 && flg2)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Both B and X must be of type MATSCALAPACK"); 733 MatScaLAPACKCheckDistribution(B,1,X,2); 734 b = (Mat_ScaLAPACK*)B->data; 735 x = (Mat_ScaLAPACK*)X->data; 736 ierr = PetscArraycpy(x->loc,b->loc,b->lld*b->locc);CHKERRQ(ierr); 737 738 switch (A->factortype) { 739 case MAT_FACTOR_LU: 740 PetscStackCallBLAS("SCALAPACKgetrs",SCALAPACKgetrs_("N",&a->M,&x->N,a->loc,&one,&one,a->desc,a->pivots,x->loc,&one,&one,x->desc,&info)); 741 PetscCheckScaLapackInfo("getrs",info); 742 break; 743 case MAT_FACTOR_CHOLESKY: 744 PetscStackCallBLAS("SCALAPACKpotrs",SCALAPACKpotrs_("L",&a->M,&x->N,a->loc,&one,&one,a->desc,x->loc,&one,&one,x->desc,&info)); 745 PetscCheckScaLapackInfo("potrs",info); 746 break; 747 default: 748 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 749 break; 750 } 751 PetscFunctionReturn(0); 752 } 753 754 static PetscErrorCode MatLUFactor_ScaLAPACK(Mat A,IS row,IS col,const MatFactorInfo *factorinfo) 755 { 756 PetscErrorCode ierr; 757 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 758 PetscBLASInt one=1,info; 759 760 PetscFunctionBegin; 761 if (!a->pivots) { 762 ierr = PetscMalloc1(a->locr+a->mb,&a->pivots);CHKERRQ(ierr); 763 ierr = PetscLogObjectMemory((PetscObject)A,a->locr*sizeof(PetscBLASInt));CHKERRQ(ierr); 764 } 765 PetscStackCallBLAS("SCALAPACKgetrf",SCALAPACKgetrf_(&a->M,&a->N,a->loc,&one,&one,a->desc,a->pivots,&info)); 766 PetscCheckScaLapackInfo("getrf",info); 767 A->factortype = MAT_FACTOR_LU; 768 A->assembled = PETSC_TRUE; 769 770 ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 771 ierr = PetscStrallocpy(MATSOLVERSCALAPACK,&A->solvertype);CHKERRQ(ierr); 772 PetscFunctionReturn(0); 773 } 774 775 static PetscErrorCode MatLUFactorNumeric_ScaLAPACK(Mat F,Mat A,const MatFactorInfo *info) 776 { 777 PetscErrorCode ierr; 778 779 PetscFunctionBegin; 780 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 781 ierr = MatLUFactor_ScaLAPACK(F,0,0,info);CHKERRQ(ierr); 782 PetscFunctionReturn(0); 783 } 784 785 static PetscErrorCode MatLUFactorSymbolic_ScaLAPACK(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 786 { 787 PetscFunctionBegin; 788 /* F is created and allocated by MatGetFactor_scalapack_petsc(), skip this routine. */ 789 PetscFunctionReturn(0); 790 } 791 792 static PetscErrorCode MatCholeskyFactor_ScaLAPACK(Mat A,IS perm,const MatFactorInfo *factorinfo) 793 { 794 PetscErrorCode ierr; 795 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 796 PetscBLASInt one=1,info; 797 798 PetscFunctionBegin; 799 PetscStackCallBLAS("SCALAPACKpotrf",SCALAPACKpotrf_("L",&a->M,a->loc,&one,&one,a->desc,&info)); 800 PetscCheckScaLapackInfo("potrf",info); 801 A->factortype = MAT_FACTOR_CHOLESKY; 802 A->assembled = PETSC_TRUE; 803 804 ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 805 ierr = PetscStrallocpy(MATSOLVERSCALAPACK,&A->solvertype);CHKERRQ(ierr); 806 PetscFunctionReturn(0); 807 } 808 809 static PetscErrorCode MatCholeskyFactorNumeric_ScaLAPACK(Mat F,Mat A,const MatFactorInfo *info) 810 { 811 PetscErrorCode ierr; 812 813 PetscFunctionBegin; 814 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 815 ierr = MatCholeskyFactor_ScaLAPACK(F,0,info);CHKERRQ(ierr); 816 PetscFunctionReturn(0); 817 } 818 819 static PetscErrorCode MatCholeskyFactorSymbolic_ScaLAPACK(Mat F,Mat A,IS perm,const MatFactorInfo *info) 820 { 821 PetscFunctionBegin; 822 /* F is created and allocated by MatGetFactor_scalapack_petsc(), skip this routine. */ 823 PetscFunctionReturn(0); 824 } 825 826 PetscErrorCode MatFactorGetSolverType_scalapack_scalapack(Mat A,MatSolverType *type) 827 { 828 PetscFunctionBegin; 829 *type = MATSOLVERSCALAPACK; 830 PetscFunctionReturn(0); 831 } 832 833 static PetscErrorCode MatGetFactor_scalapack_scalapack(Mat A,MatFactorType ftype,Mat *F) 834 { 835 Mat B; 836 PetscErrorCode ierr; 837 838 PetscFunctionBegin; 839 /* Create the factorization matrix */ 840 ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 841 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 842 ierr = MatSetType(B,MATSCALAPACK);CHKERRQ(ierr); 843 ierr = MatSetUp(B);CHKERRQ(ierr); 844 B->factortype = ftype; 845 ierr = PetscFree(B->solvertype);CHKERRQ(ierr); 846 ierr = PetscStrallocpy(MATSOLVERSCALAPACK,&B->solvertype);CHKERRQ(ierr); 847 848 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverType_C",MatFactorGetSolverType_scalapack_scalapack);CHKERRQ(ierr); 849 *F = B; 850 PetscFunctionReturn(0); 851 } 852 853 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_ScaLAPACK(void) 854 { 855 PetscErrorCode ierr; 856 857 PetscFunctionBegin; 858 ierr = MatSolverTypeRegister(MATSOLVERSCALAPACK,MATSCALAPACK,MAT_FACTOR_LU,MatGetFactor_scalapack_scalapack);CHKERRQ(ierr); 859 ierr = MatSolverTypeRegister(MATSOLVERSCALAPACK,MATSCALAPACK,MAT_FACTOR_CHOLESKY,MatGetFactor_scalapack_scalapack);CHKERRQ(ierr); 860 PetscFunctionReturn(0); 861 } 862 863 static PetscErrorCode MatNorm_ScaLAPACK(Mat A,NormType type,PetscReal *nrm) 864 { 865 PetscErrorCode ierr; 866 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 867 PetscBLASInt one=1,lwork=0; 868 const char *ntype; 869 PetscScalar *work,dummy; 870 871 PetscFunctionBegin; 872 switch (type){ 873 case NORM_1: 874 ntype = "1"; 875 lwork = PetscMax(a->locr,a->locc); 876 break; 877 case NORM_FROBENIUS: 878 ntype = "F"; 879 work = &dummy; 880 break; 881 case NORM_INFINITY: 882 ntype = "I"; 883 lwork = PetscMax(a->locr,a->locc); 884 break; 885 default: 886 SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Unsupported norm type"); 887 } 888 if (lwork) { ierr = PetscMalloc1(lwork,&work);CHKERRQ(ierr); } 889 *nrm = SCALAPACKlange_(ntype,&a->M,&a->N,a->loc,&one,&one,a->desc,work); 890 if (lwork) { ierr = PetscFree(work);CHKERRQ(ierr); } 891 PetscFunctionReturn(0); 892 } 893 894 static PetscErrorCode MatZeroEntries_ScaLAPACK(Mat A) 895 { 896 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 897 PetscErrorCode ierr; 898 899 PetscFunctionBegin; 900 ierr = PetscArrayzero(a->loc,a->lld*a->locc);CHKERRQ(ierr); 901 PetscFunctionReturn(0); 902 } 903 904 static PetscErrorCode MatGetOwnershipIS_ScaLAPACK(Mat A,IS *rows,IS *cols) 905 { 906 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 907 PetscErrorCode ierr; 908 PetscInt i,n,nb,isrc,nproc,iproc,*idx; 909 910 PetscFunctionBegin; 911 if (rows) { 912 n = a->locr; 913 nb = a->mb; 914 isrc = a->rsrc; 915 nproc = a->grid->nprow; 916 iproc = a->grid->myrow; 917 ierr = PetscMalloc1(n,&idx);CHKERRQ(ierr); 918 for (i=0;i<n;i++) idx[i] = nproc*nb*(i/nb) + i%nb + ((nproc+iproc-isrc)%nproc)*nb; 919 ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 920 } 921 if (cols) { 922 n = a->locc; 923 nb = a->nb; 924 isrc = a->csrc; 925 nproc = a->grid->npcol; 926 iproc = a->grid->mycol; 927 ierr = PetscMalloc1(n,&idx);CHKERRQ(ierr); 928 for (i=0;i<n;i++) idx[i] = nproc*nb*(i/nb) + i%nb + ((nproc+iproc-isrc)%nproc)*nb; 929 ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 930 } 931 PetscFunctionReturn(0); 932 } 933 934 static PetscErrorCode MatConvert_ScaLAPACK_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B) 935 { 936 PetscErrorCode ierr; 937 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 938 Mat Bmpi; 939 MPI_Comm comm; 940 const PetscInt *ranges; 941 PetscBLASInt bdesc[9],bmb,zero=0,one=1,lld,info; 942 PetscScalar *barray; 943 944 PetscFunctionBegin; 945 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 946 947 if (reuse == MAT_REUSE_MATRIX) Bmpi = *B; 948 else { 949 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 950 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 951 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 952 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 953 } 954 955 /* create ScaLAPACK descriptor for B (1d block distribution) */ 956 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 957 ierr = PetscBLASIntCast(ranges[1],&bmb);CHKERRQ(ierr); /* row block size */ 958 lld = PetscMax(A->rmap->n,1); /* local leading dimension */ 959 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(bdesc,&a->M,&a->N,&bmb,&a->N,&zero,&zero,&a->grid->ictxcol,&lld,&info)); 960 PetscCheckScaLapackInfo("descinit",info); 961 962 /* redistribute matrix */ 963 ierr = MatDenseGetArray(Bmpi,&barray);CHKERRQ(ierr); 964 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&a->M,&a->N,a->loc,&one,&one,a->desc,barray,&one,&one,bdesc,&a->grid->ictxcol)); 965 ierr = MatDenseRestoreArray(Bmpi,&barray);CHKERRQ(ierr); 966 967 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 968 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 969 if (reuse == MAT_INPLACE_MATRIX) { 970 ierr = MatHeaderReplace(A,&Bmpi);CHKERRQ(ierr); 971 } else *B = Bmpi; 972 PetscFunctionReturn(0); 973 } 974 975 PETSC_INTERN PetscErrorCode MatConvert_Dense_ScaLAPACK(Mat A,MatType newtype,MatReuse reuse,Mat *B) 976 { 977 PetscErrorCode ierr; 978 Mat_ScaLAPACK *b; 979 Mat Bmpi; 980 MPI_Comm comm; 981 const PetscInt *ranges; 982 PetscBLASInt adesc[9],amb,zero=0,one=1,lld,info; 983 PetscScalar *aarray; 984 985 PetscFunctionBegin; 986 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 987 988 if (reuse == MAT_REUSE_MATRIX) Bmpi = *B; 989 else { 990 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 991 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 992 ierr = MatSetType(Bmpi,MATSCALAPACK);CHKERRQ(ierr); 993 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 994 } 995 b = (Mat_ScaLAPACK*)Bmpi->data; 996 997 /* create ScaLAPACK descriptor for A (1d block distribution) */ 998 ierr = PetscLayoutGetRanges(A->rmap,&ranges);CHKERRQ(ierr); 999 ierr = PetscBLASIntCast(ranges[1],&amb);CHKERRQ(ierr); /* row block size */ 1000 lld = PetscMax(A->rmap->n,1); /* local leading dimension */ 1001 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(adesc,&b->M,&b->N,&amb,&b->N,&zero,&zero,&b->grid->ictxcol,&lld,&info)); 1002 PetscCheckScaLapackInfo("descinit",info); 1003 1004 /* redistribute matrix */ 1005 ierr = MatDenseGetArray(A,&aarray);CHKERRQ(ierr); 1006 PetscStackCallBLAS("SCALAPACKgemr2d",SCALAPACKgemr2d_(&b->M,&b->N,aarray,&one,&one,adesc,b->loc,&one,&one,b->desc,&b->grid->ictxcol)); 1007 ierr = MatDenseRestoreArray(A,&aarray);CHKERRQ(ierr); 1008 1009 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1010 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1011 if (reuse == MAT_INPLACE_MATRIX) { 1012 ierr = MatHeaderReplace(A,&Bmpi);CHKERRQ(ierr); 1013 } else *B = Bmpi; 1014 PetscFunctionReturn(0); 1015 } 1016 1017 PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1018 { 1019 Mat mat_scal; 1020 PetscErrorCode ierr; 1021 PetscInt M=A->rmap->N,N=A->cmap->N,rstart=A->rmap->rstart,rend=A->rmap->rend,m,n,row,ncols; 1022 const PetscInt *cols; 1023 const PetscScalar *vals; 1024 1025 PetscFunctionBegin; 1026 if (reuse == MAT_REUSE_MATRIX) { 1027 mat_scal = *newmat; 1028 ierr = MatZeroEntries(mat_scal);CHKERRQ(ierr); 1029 } else { 1030 ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat_scal);CHKERRQ(ierr); 1031 m = PETSC_DECIDE; 1032 ierr = PetscSplitOwnershipEqual(PetscObjectComm((PetscObject)A),&m,&M);CHKERRQ(ierr); 1033 n = PETSC_DECIDE; 1034 ierr = PetscSplitOwnershipEqual(PetscObjectComm((PetscObject)A),&n,&N);CHKERRQ(ierr); 1035 ierr = MatSetSizes(mat_scal,m,n,M,N);CHKERRQ(ierr); 1036 ierr = MatSetType(mat_scal,MATSCALAPACK);CHKERRQ(ierr); 1037 ierr = MatSetUp(mat_scal);CHKERRQ(ierr); 1038 } 1039 for (row=rstart;row<rend;row++) { 1040 ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 1041 ierr = MatSetValues(mat_scal,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 1042 ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 1043 } 1044 ierr = MatAssemblyBegin(mat_scal,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1045 ierr = MatAssemblyEnd(mat_scal,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1046 1047 if (reuse == MAT_INPLACE_MATRIX) { ierr = MatHeaderReplace(A,&mat_scal);CHKERRQ(ierr); } 1048 else *newmat = mat_scal; 1049 PetscFunctionReturn(0); 1050 } 1051 1052 PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 1053 { 1054 Mat mat_scal; 1055 PetscErrorCode ierr; 1056 PetscInt M=A->rmap->N,N=A->cmap->N,m,n,row,ncols,j,rstart=A->rmap->rstart,rend=A->rmap->rend; 1057 const PetscInt *cols; 1058 const PetscScalar *vals; 1059 PetscScalar v; 1060 1061 PetscFunctionBegin; 1062 if (reuse == MAT_REUSE_MATRIX) { 1063 mat_scal = *newmat; 1064 ierr = MatZeroEntries(mat_scal);CHKERRQ(ierr); 1065 } else { 1066 ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat_scal);CHKERRQ(ierr); 1067 m = PETSC_DECIDE; 1068 ierr = PetscSplitOwnershipEqual(PetscObjectComm((PetscObject)A),&m,&M);CHKERRQ(ierr); 1069 n = PETSC_DECIDE; 1070 ierr = PetscSplitOwnershipEqual(PetscObjectComm((PetscObject)A),&n,&N);CHKERRQ(ierr); 1071 ierr = MatSetSizes(mat_scal,m,n,M,N);CHKERRQ(ierr); 1072 ierr = MatSetType(mat_scal,MATSCALAPACK);CHKERRQ(ierr); 1073 ierr = MatSetUp(mat_scal);CHKERRQ(ierr); 1074 } 1075 ierr = MatGetRowUpperTriangular(A);CHKERRQ(ierr); 1076 for (row=rstart;row<rend;row++) { 1077 ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 1078 ierr = MatSetValues(mat_scal,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr); 1079 for (j=0;j<ncols;j++) { /* lower triangular part */ 1080 if (cols[j] == row) continue; 1081 v = A->hermitian ? PetscConj(vals[j]) : vals[j]; 1082 ierr = MatSetValues(mat_scal,1,&cols[j],1,&row,&v,ADD_VALUES);CHKERRQ(ierr); 1083 } 1084 ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 1085 } 1086 ierr = MatRestoreRowUpperTriangular(A);CHKERRQ(ierr); 1087 ierr = MatAssemblyBegin(mat_scal,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1088 ierr = MatAssemblyEnd(mat_scal,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1089 1090 if (reuse == MAT_INPLACE_MATRIX) { ierr = MatHeaderReplace(A,&mat_scal);CHKERRQ(ierr); } 1091 else *newmat = mat_scal; 1092 PetscFunctionReturn(0); 1093 } 1094 1095 static PetscErrorCode MatScaLAPACKSetPreallocation(Mat A) 1096 { 1097 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 1098 PetscErrorCode ierr; 1099 PetscInt sz=0; 1100 1101 PetscFunctionBegin; 1102 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1103 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1104 if (!a->lld) a->lld = a->locr; 1105 1106 ierr = PetscFree(a->loc);CHKERRQ(ierr); 1107 ierr = PetscIntMultError(a->lld,a->locc,&sz);CHKERRQ(ierr); 1108 ierr = PetscCalloc1(sz,&a->loc);CHKERRQ(ierr); 1109 ierr = PetscLogObjectMemory((PetscObject)A,sz*sizeof(PetscScalar));CHKERRQ(ierr); 1110 1111 A->preallocated = PETSC_TRUE; 1112 PetscFunctionReturn(0); 1113 } 1114 1115 static PetscErrorCode MatDestroy_ScaLAPACK(Mat A) 1116 { 1117 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 1118 PetscErrorCode ierr; 1119 Mat_ScaLAPACK_Grid *grid; 1120 PetscBool flg; 1121 MPI_Comm icomm; 1122 1123 PetscFunctionBegin; 1124 ierr = MatStashDestroy_Private(&A->stash);CHKERRQ(ierr); 1125 ierr = PetscFree(a->loc);CHKERRQ(ierr); 1126 ierr = PetscFree(a->pivots);CHKERRQ(ierr); 1127 ierr = PetscCommDuplicate(PetscObjectComm((PetscObject)A),&icomm,NULL);CHKERRQ(ierr); 1128 ierr = MPI_Comm_get_attr(icomm,Petsc_ScaLAPACK_keyval,(void**)&grid,(int*)&flg);CHKERRQ(ierr); 1129 if (--grid->grid_refct == 0) { 1130 Cblacs_gridexit(grid->ictxt); 1131 Cblacs_gridexit(grid->ictxrow); 1132 Cblacs_gridexit(grid->ictxcol); 1133 ierr = PetscFree(grid);CHKERRQ(ierr); 1134 ierr = MPI_Comm_free_keyval(&Petsc_ScaLAPACK_keyval);CHKERRQ(ierr); 1135 } 1136 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1137 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",NULL);CHKERRQ(ierr); 1138 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverType_C",NULL);CHKERRQ(ierr); 1139 ierr = PetscObjectComposeFunction((PetscObject)A,"MatScaLAPACKSetBlockSizes_C",NULL);CHKERRQ(ierr); 1140 ierr = PetscObjectComposeFunction((PetscObject)A,"MatScaLAPACKGetBlockSizes_C",NULL);CHKERRQ(ierr); 1141 ierr = PetscFree(A->data);CHKERRQ(ierr); 1142 PetscFunctionReturn(0); 1143 } 1144 1145 PETSC_STATIC_INLINE PetscErrorCode MatScaLAPACKCheckLayout(PetscLayout map) 1146 { 1147 PetscErrorCode ierr; 1148 const PetscInt *ranges; 1149 PetscMPIInt size; 1150 PetscInt i,n; 1151 1152 PetscFunctionBegin; 1153 ierr = MPI_Comm_size(map->comm,&size);CHKERRQ(ierr); 1154 if (size>2) { 1155 ierr = PetscLayoutGetRanges(map,&ranges);CHKERRQ(ierr); 1156 n = ranges[1]-ranges[0]; 1157 for (i=1;i<size-1;i++) if (ranges[i+1]-ranges[i]!=n) break; 1158 if (i<size-1 && ranges[i+1]-ranges[i]!=0 && ranges[i+2]-ranges[i+1]!=0) SETERRQ(map->comm,PETSC_ERR_SUP,"MATSCALAPACK must have equal local sizes in all processes (except possibly the last one), consider using MatCreateScaLAPACK"); 1159 } 1160 PetscFunctionReturn(0); 1161 } 1162 1163 PetscErrorCode MatSetUp_ScaLAPACK(Mat A) 1164 { 1165 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 1166 PetscErrorCode ierr; 1167 PetscBLASInt info=0; 1168 1169 PetscFunctionBegin; 1170 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1171 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1172 1173 /* check that the layout is as enforced by MatCreateScaLAPACK */ 1174 ierr = MatScaLAPACKCheckLayout(A->rmap);CHKERRQ(ierr); 1175 ierr = MatScaLAPACKCheckLayout(A->cmap);CHKERRQ(ierr); 1176 1177 /* compute local sizes */ 1178 ierr = PetscBLASIntCast(A->rmap->N,&a->M);CHKERRQ(ierr); 1179 ierr = PetscBLASIntCast(A->cmap->N,&a->N);CHKERRQ(ierr); 1180 a->locr = SCALAPACKnumroc_(&a->M,&a->mb,&a->grid->myrow,&a->rsrc,&a->grid->nprow); 1181 a->locc = SCALAPACKnumroc_(&a->N,&a->nb,&a->grid->mycol,&a->csrc,&a->grid->npcol); 1182 a->lld = PetscMax(1,a->locr); 1183 1184 /* allocate local array */ 1185 ierr = MatScaLAPACKSetPreallocation(A);CHKERRQ(ierr); 1186 1187 /* set up ScaLAPACK descriptor */ 1188 PetscStackCallBLAS("SCALAPACKdescinit",SCALAPACKdescinit_(a->desc,&a->M,&a->N,&a->mb,&a->nb,&a->rsrc,&a->csrc,&a->grid->ictxt,&a->lld,&info)); 1189 PetscCheckScaLapackInfo("descinit",info); 1190 PetscFunctionReturn(0); 1191 } 1192 1193 PetscErrorCode MatAssemblyBegin_ScaLAPACK(Mat A,MatAssemblyType type) 1194 { 1195 PetscErrorCode ierr; 1196 PetscInt nstash,reallocs; 1197 1198 PetscFunctionBegin; 1199 if (A->nooffprocentries) PetscFunctionReturn(0); 1200 ierr = MatStashScatterBegin_Private(A,&A->stash,NULL);CHKERRQ(ierr); 1201 ierr = MatStashGetInfo_Private(&A->stash,&nstash,&reallocs);CHKERRQ(ierr); 1202 ierr = PetscInfo2(A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 1203 PetscFunctionReturn(0); 1204 } 1205 1206 PetscErrorCode MatAssemblyEnd_ScaLAPACK(Mat A,MatAssemblyType type) 1207 { 1208 PetscErrorCode ierr; 1209 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 1210 PetscMPIInt n; 1211 PetscInt i,flg,*row,*col; 1212 PetscScalar *val; 1213 PetscBLASInt gridx,gcidx,lridx,lcidx,rsrc,csrc; 1214 1215 PetscFunctionBegin; 1216 if (A->nooffprocentries) PetscFunctionReturn(0); 1217 while (1) { 1218 ierr = MatStashScatterGetMesg_Private(&A->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1219 if (!flg) break; 1220 for (i=0;i<n;i++) { 1221 ierr = PetscBLASIntCast(row[i]+1,&gridx);CHKERRQ(ierr); 1222 ierr = PetscBLASIntCast(col[i]+1,&gcidx);CHKERRQ(ierr); 1223 PetscStackCallBLAS("SCALAPACKinfog2l",SCALAPACKinfog2l_(&gridx,&gcidx,a->desc,&a->grid->nprow,&a->grid->npcol,&a->grid->myrow,&a->grid->mycol,&lridx,&lcidx,&rsrc,&csrc)); 1224 if (rsrc!=a->grid->myrow || csrc!=a->grid->mycol) SETERRQ(PetscObjectComm((PetscObject)A),1,"Something went wrong, received value does not belong to this process"); 1225 switch (A->insertmode) { 1226 case INSERT_VALUES: a->loc[lridx-1+(lcidx-1)*a->lld] = val[i]; break; 1227 case ADD_VALUES: a->loc[lridx-1+(lcidx-1)*a->lld] += val[i]; break; 1228 default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)A->insertmode); 1229 } 1230 } 1231 } 1232 ierr = MatStashScatterEnd_Private(&A->stash);CHKERRQ(ierr); 1233 PetscFunctionReturn(0); 1234 } 1235 1236 PetscErrorCode MatLoad_ScaLAPACK(Mat newMat,PetscViewer viewer) 1237 { 1238 PetscErrorCode ierr; 1239 Mat Adense,As; 1240 MPI_Comm comm; 1241 1242 PetscFunctionBegin; 1243 ierr = PetscObjectGetComm((PetscObject)newMat,&comm);CHKERRQ(ierr); 1244 ierr = MatCreate(comm,&Adense);CHKERRQ(ierr); 1245 ierr = MatSetType(Adense,MATDENSE);CHKERRQ(ierr); 1246 ierr = MatLoad(Adense,viewer);CHKERRQ(ierr); 1247 ierr = MatConvert(Adense,MATSCALAPACK,MAT_INITIAL_MATRIX,&As);CHKERRQ(ierr); 1248 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 1249 ierr = MatHeaderReplace(newMat,&As);CHKERRQ(ierr); 1250 PetscFunctionReturn(0); 1251 } 1252 1253 /* -------------------------------------------------------------------*/ 1254 static struct _MatOps MatOps_Values = { 1255 MatSetValues_ScaLAPACK, 1256 0, 1257 0, 1258 MatMult_ScaLAPACK, 1259 /* 4*/ MatMultAdd_ScaLAPACK, 1260 MatMultTranspose_ScaLAPACK, 1261 MatMultTransposeAdd_ScaLAPACK, 1262 MatSolve_ScaLAPACK, 1263 MatSolveAdd_ScaLAPACK, 1264 0, 1265 /*10*/ 0, 1266 MatLUFactor_ScaLAPACK, 1267 MatCholeskyFactor_ScaLAPACK, 1268 0, 1269 MatTranspose_ScaLAPACK, 1270 /*15*/ MatGetInfo_ScaLAPACK, 1271 0, 1272 MatGetDiagonal_ScaLAPACK, 1273 MatDiagonalScale_ScaLAPACK, 1274 MatNorm_ScaLAPACK, 1275 /*20*/ MatAssemblyBegin_ScaLAPACK, 1276 MatAssemblyEnd_ScaLAPACK, 1277 MatSetOption_ScaLAPACK, 1278 MatZeroEntries_ScaLAPACK, 1279 /*24*/ 0, 1280 MatLUFactorSymbolic_ScaLAPACK, 1281 MatLUFactorNumeric_ScaLAPACK, 1282 MatCholeskyFactorSymbolic_ScaLAPACK, 1283 MatCholeskyFactorNumeric_ScaLAPACK, 1284 /*29*/ MatSetUp_ScaLAPACK, 1285 0, 1286 0, 1287 0, 1288 0, 1289 /*34*/ MatDuplicate_ScaLAPACK, 1290 0, 1291 0, 1292 0, 1293 0, 1294 /*39*/ MatAXPY_ScaLAPACK, 1295 0, 1296 0, 1297 0, 1298 MatCopy_ScaLAPACK, 1299 /*44*/ 0, 1300 MatScale_ScaLAPACK, 1301 MatShift_ScaLAPACK, 1302 0, 1303 0, 1304 /*49*/ 0, 1305 0, 1306 0, 1307 0, 1308 0, 1309 /*54*/ 0, 1310 0, 1311 0, 1312 0, 1313 0, 1314 /*59*/ 0, 1315 MatDestroy_ScaLAPACK, 1316 MatView_ScaLAPACK, 1317 0, 1318 0, 1319 /*64*/ 0, 1320 0, 1321 0, 1322 0, 1323 0, 1324 /*69*/ 0, 1325 0, 1326 MatConvert_ScaLAPACK_Dense, 1327 0, 1328 0, 1329 /*74*/ 0, 1330 0, 1331 0, 1332 0, 1333 0, 1334 /*79*/ 0, 1335 0, 1336 0, 1337 0, 1338 MatLoad_ScaLAPACK, 1339 /*84*/ 0, 1340 0, 1341 0, 1342 0, 1343 0, 1344 /*89*/ 0, 1345 0, 1346 MatMatMultNumeric_ScaLAPACK, 1347 0, 1348 0, 1349 /*94*/ 0, 1350 0, 1351 0, 1352 MatMatTransposeMultNumeric_ScaLAPACK, 1353 0, 1354 /*99*/ MatProductSetFromOptions_ScaLAPACK, 1355 0, 1356 0, 1357 MatConjugate_ScaLAPACK, 1358 0, 1359 /*104*/0, 1360 0, 1361 0, 1362 0, 1363 0, 1364 /*109*/MatMatSolve_ScaLAPACK, 1365 0, 1366 0, 1367 0, 1368 MatMissingDiagonal_ScaLAPACK, 1369 /*114*/0, 1370 0, 1371 0, 1372 0, 1373 0, 1374 /*119*/0, 1375 MatHermitianTranspose_ScaLAPACK, 1376 0, 1377 0, 1378 0, 1379 /*124*/0, 1380 0, 1381 0, 1382 0, 1383 0, 1384 /*129*/0, 1385 0, 1386 0, 1387 0, 1388 0, 1389 /*134*/0, 1390 0, 1391 0, 1392 0, 1393 0, 1394 0, 1395 /*140*/0, 1396 0, 1397 0, 1398 0, 1399 0, 1400 /*145*/0, 1401 0, 1402 0 1403 }; 1404 1405 static PetscErrorCode MatStashScatterBegin_ScaLAPACK(Mat mat,MatStash *stash,PetscInt *owners) 1406 { 1407 PetscInt *owner,*startv,*starti,tag1=stash->tag1,tag2=stash->tag2,bs2; 1408 PetscInt size=stash->size,nsends; 1409 PetscErrorCode ierr; 1410 PetscInt count,*sindices,**rindices,i,j,l; 1411 PetscScalar **rvalues,*svalues; 1412 MPI_Comm comm = stash->comm; 1413 MPI_Request *send_waits,*recv_waits,*recv_waits1,*recv_waits2; 1414 PetscMPIInt *sizes,*nlengths,nreceives; 1415 PetscInt *sp_idx,*sp_idy; 1416 PetscScalar *sp_val; 1417 PetscMatStashSpace space,space_next; 1418 PetscBLASInt gridx,gcidx,lridx,lcidx,rsrc,csrc; 1419 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)mat->data; 1420 1421 PetscFunctionBegin; 1422 { /* make sure all processors are either in INSERTMODE or ADDMODE */ 1423 InsertMode addv; 1424 ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1425 if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 1426 mat->insertmode = addv; /* in case this processor had no cache */ 1427 } 1428 1429 bs2 = stash->bs*stash->bs; 1430 1431 /* first count number of contributors to each processor */ 1432 ierr = PetscCalloc1(size,&nlengths);CHKERRQ(ierr); 1433 ierr = PetscMalloc1(stash->n+1,&owner);CHKERRQ(ierr); 1434 1435 i = j = 0; 1436 space = stash->space_head; 1437 while (space) { 1438 space_next = space->next; 1439 for (l=0; l<space->local_used; l++) { 1440 ierr = PetscBLASIntCast(space->idx[l]+1,&gridx);CHKERRQ(ierr); 1441 ierr = PetscBLASIntCast(space->idy[l]+1,&gcidx);CHKERRQ(ierr); 1442 PetscStackCallBLAS("SCALAPACKinfog2l",SCALAPACKinfog2l_(&gridx,&gcidx,a->desc,&a->grid->nprow,&a->grid->npcol,&a->grid->myrow,&a->grid->mycol,&lridx,&lcidx,&rsrc,&csrc)); 1443 j = Cblacs_pnum(a->grid->ictxt,rsrc,csrc); 1444 nlengths[j]++; owner[i] = j; 1445 i++; 1446 } 1447 space = space_next; 1448 } 1449 1450 /* Now check what procs get messages - and compute nsends. */ 1451 ierr = PetscCalloc1(size,&sizes);CHKERRQ(ierr); 1452 for (i=0, nsends=0; i<size; i++) { 1453 if (nlengths[i]) { 1454 sizes[i] = 1; nsends++; 1455 } 1456 } 1457 1458 {PetscMPIInt *onodes,*olengths; 1459 /* Determine the number of messages to expect, their lengths, from from-ids */ 1460 ierr = PetscGatherNumberOfMessages(comm,sizes,nlengths,&nreceives);CHKERRQ(ierr); 1461 ierr = PetscGatherMessageLengths(comm,nsends,nreceives,nlengths,&onodes,&olengths);CHKERRQ(ierr); 1462 /* since clubbing row,col - lengths are multiplied by 2 */ 1463 for (i=0; i<nreceives; i++) olengths[i] *=2; 1464 ierr = PetscPostIrecvInt(comm,tag1,nreceives,onodes,olengths,&rindices,&recv_waits1);CHKERRQ(ierr); 1465 /* values are size 'bs2' lengths (and remove earlier factor 2 */ 1466 for (i=0; i<nreceives; i++) olengths[i] = olengths[i]*bs2/2; 1467 ierr = PetscPostIrecvScalar(comm,tag2,nreceives,onodes,olengths,&rvalues,&recv_waits2);CHKERRQ(ierr); 1468 ierr = PetscFree(onodes);CHKERRQ(ierr); 1469 ierr = PetscFree(olengths);CHKERRQ(ierr);} 1470 1471 /* do sends: 1472 1) starts[i] gives the starting index in svalues for stuff going to 1473 the ith processor 1474 */ 1475 ierr = PetscMalloc2(bs2*stash->n,&svalues,2*(stash->n+1),&sindices);CHKERRQ(ierr); 1476 ierr = PetscMalloc1(2*nsends,&send_waits);CHKERRQ(ierr); 1477 ierr = PetscMalloc2(size,&startv,size,&starti);CHKERRQ(ierr); 1478 /* use 2 sends the first with all_a, the next with all_i and all_j */ 1479 startv[0] = 0; starti[0] = 0; 1480 for (i=1; i<size; i++) { 1481 startv[i] = startv[i-1] + nlengths[i-1]; 1482 starti[i] = starti[i-1] + 2*nlengths[i-1]; 1483 } 1484 1485 i = 0; 1486 space = stash->space_head; 1487 while (space) { 1488 space_next = space->next; 1489 sp_idx = space->idx; 1490 sp_idy = space->idy; 1491 sp_val = space->val; 1492 for (l=0; l<space->local_used; l++) { 1493 j = owner[i]; 1494 if (bs2 == 1) { 1495 svalues[startv[j]] = sp_val[l]; 1496 } else { 1497 PetscInt k; 1498 PetscScalar *buf1,*buf2; 1499 buf1 = svalues+bs2*startv[j]; 1500 buf2 = space->val + bs2*l; 1501 for (k=0; k<bs2; k++) buf1[k] = buf2[k]; 1502 } 1503 sindices[starti[j]] = sp_idx[l]; 1504 sindices[starti[j]+nlengths[j]] = sp_idy[l]; 1505 startv[j]++; 1506 starti[j]++; 1507 i++; 1508 } 1509 space = space_next; 1510 } 1511 startv[0] = 0; 1512 for (i=1; i<size; i++) startv[i] = startv[i-1] + nlengths[i-1]; 1513 1514 for (i=0,count=0; i<size; i++) { 1515 if (sizes[i]) { 1516 ierr = MPI_Isend(sindices+2*startv[i],2*nlengths[i],MPIU_INT,i,tag1,comm,send_waits+count++);CHKERRQ(ierr); 1517 ierr = MPI_Isend(svalues+bs2*startv[i],bs2*nlengths[i],MPIU_SCALAR,i,tag2,comm,send_waits+count++);CHKERRQ(ierr); 1518 } 1519 } 1520 #if defined(PETSC_USE_INFO) 1521 ierr = PetscInfo1(NULL,"No of messages: %d \n",nsends);CHKERRQ(ierr); 1522 for (i=0; i<size; i++) { 1523 if (sizes[i]) { 1524 ierr = PetscInfo2(NULL,"Mesg_to: %d: size: %d bytes\n",i,nlengths[i]*(bs2*sizeof(PetscScalar)+2*sizeof(PetscInt)));CHKERRQ(ierr); 1525 } 1526 } 1527 #endif 1528 ierr = PetscFree(nlengths);CHKERRQ(ierr); 1529 ierr = PetscFree(owner);CHKERRQ(ierr); 1530 ierr = PetscFree2(startv,starti);CHKERRQ(ierr); 1531 ierr = PetscFree(sizes);CHKERRQ(ierr); 1532 1533 /* recv_waits need to be contiguous for MatStashScatterGetMesg_Private() */ 1534 ierr = PetscMalloc1(2*nreceives,&recv_waits);CHKERRQ(ierr); 1535 1536 for (i=0; i<nreceives; i++) { 1537 recv_waits[2*i] = recv_waits1[i]; 1538 recv_waits[2*i+1] = recv_waits2[i]; 1539 } 1540 stash->recv_waits = recv_waits; 1541 1542 ierr = PetscFree(recv_waits1);CHKERRQ(ierr); 1543 ierr = PetscFree(recv_waits2);CHKERRQ(ierr); 1544 1545 stash->svalues = svalues; 1546 stash->sindices = sindices; 1547 stash->rvalues = rvalues; 1548 stash->rindices = rindices; 1549 stash->send_waits = send_waits; 1550 stash->nsends = nsends; 1551 stash->nrecvs = nreceives; 1552 stash->reproduce_count = 0; 1553 PetscFunctionReturn(0); 1554 } 1555 1556 static PetscErrorCode MatScaLAPACKSetBlockSizes_ScaLAPACK(Mat A,PetscInt mb,PetscInt nb) 1557 { 1558 PetscErrorCode ierr; 1559 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 1560 1561 PetscFunctionBegin; 1562 if (A->preallocated) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Cannot change block sizes after MatSetUp"); 1563 if (mb<1 && mb!=PETSC_DECIDE) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"mb %D must be at least 1",mb); 1564 if (nb<1 && nb!=PETSC_DECIDE) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"nb %D must be at least 1",nb); 1565 ierr = PetscBLASIntCast((mb==PETSC_DECIDE)?DEFAULT_BLOCKSIZE:mb,&a->mb);CHKERRQ(ierr); 1566 ierr = PetscBLASIntCast((nb==PETSC_DECIDE)?a->mb:nb,&a->nb);CHKERRQ(ierr); 1567 PetscFunctionReturn(0); 1568 } 1569 1570 /*@ 1571 MatScaLAPACKSetBlockSizes - Sets the block sizes to be used for the distibution of 1572 the ScaLAPACK matrix 1573 1574 Logically Collective on A 1575 1576 Input Parameter: 1577 + A - a MATSCALAPACK matrix 1578 . mb - the row block size 1579 - nb - the column block size 1580 1581 Level: intermediate 1582 1583 .seealso: MatCreateScaLAPACK(), MatScaLAPACKGetBlockSizes() 1584 @*/ 1585 PetscErrorCode MatScaLAPACKSetBlockSizes(Mat A,PetscInt mb,PetscInt nb) 1586 { 1587 PetscErrorCode ierr; 1588 1589 PetscFunctionBegin; 1590 PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1591 PetscValidLogicalCollectiveInt(A,mb,2); 1592 PetscValidLogicalCollectiveInt(A,nb,3); 1593 ierr = PetscTryMethod(A,"MatScaLAPACKSetBlockSizes_C",(Mat,PetscInt,PetscInt),(A,mb,nb));CHKERRQ(ierr); 1594 PetscFunctionReturn(0); 1595 } 1596 1597 static PetscErrorCode MatScaLAPACKGetBlockSizes_ScaLAPACK(Mat A,PetscInt *mb,PetscInt *nb) 1598 { 1599 Mat_ScaLAPACK *a = (Mat_ScaLAPACK*)A->data; 1600 1601 PetscFunctionBegin; 1602 if (mb) *mb = a->mb; 1603 if (nb) *nb = a->nb; 1604 PetscFunctionReturn(0); 1605 } 1606 1607 /*@ 1608 MatScaLAPACKGetBlockSizes - Gets the block sizes used in the distibution of 1609 the ScaLAPACK matrix 1610 1611 Not collective 1612 1613 Input Parameter: 1614 . A - a MATSCALAPACK matrix 1615 1616 Output Parameters: 1617 + mb - the row block size 1618 - nb - the column block size 1619 1620 Level: intermediate 1621 1622 .seealso: MatCreateScaLAPACK(), MatScaLAPACKSetBlockSizes() 1623 @*/ 1624 PetscErrorCode MatScaLAPACKGetBlockSizes(Mat A,PetscInt *mb,PetscInt *nb) 1625 { 1626 PetscErrorCode ierr; 1627 1628 PetscFunctionBegin; 1629 PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1630 ierr = PetscUseMethod(A,"MatScaLAPACKGetBlockSizes_C",(Mat,PetscInt*,PetscInt*),(A,mb,nb));CHKERRQ(ierr); 1631 PetscFunctionReturn(0); 1632 } 1633 1634 PETSC_INTERN PetscErrorCode MatStashScatterGetMesg_Ref(MatStash*,PetscMPIInt*,PetscInt**,PetscInt**,PetscScalar**,PetscInt*); 1635 PETSC_INTERN PetscErrorCode MatStashScatterEnd_Ref(MatStash*); 1636 1637 /*MC 1638 MATSCALAPACK = "scalapack" - A matrix type for dense matrices using the ScaLAPACK package 1639 1640 Use ./configure --download-scalapack to install PETSc to use ScaLAPACK 1641 1642 Use -pc_type lu -pc_factor_mat_solver_type scalapack to use this direct solver 1643 1644 Options Database Keys: 1645 + -mat_type scalapack - sets the matrix type to "scalapack" during a call to MatSetFromOptions() 1646 . -mat_scalapack_grid_height - sets Grid Height for 2D cyclic ordering of internal matrix 1647 - -mat_scalapack_block_sizes - size of the blocks to use (one or two integers separated by comma) 1648 1649 Level: beginner 1650 1651 .seealso: MATDENSE, MATELEMENTAL 1652 M*/ 1653 1654 PETSC_EXTERN PetscErrorCode MatCreate_ScaLAPACK(Mat A) 1655 { 1656 Mat_ScaLAPACK *a; 1657 PetscErrorCode ierr; 1658 PetscBool flg,flg1; 1659 Mat_ScaLAPACK_Grid *grid; 1660 MPI_Comm icomm; 1661 PetscBLASInt nprow,npcol,myrow,mycol; 1662 PetscInt optv1,k=2,array[2]={0,0}; 1663 PetscMPIInt size; 1664 1665 PetscFunctionBegin; 1666 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1667 A->insertmode = NOT_SET_VALUES; 1668 1669 ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)A),1,&A->stash);CHKERRQ(ierr); 1670 A->stash.ScatterBegin = MatStashScatterBegin_ScaLAPACK; 1671 A->stash.ScatterGetMesg = MatStashScatterGetMesg_Ref; 1672 A->stash.ScatterEnd = MatStashScatterEnd_Ref; 1673 A->stash.ScatterDestroy = NULL; 1674 1675 ierr = PetscNewLog(A,&a);CHKERRQ(ierr); 1676 A->data = (void*)a; 1677 1678 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1679 if (Petsc_ScaLAPACK_keyval == MPI_KEYVAL_INVALID) { 1680 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,MPI_COMM_NULL_DELETE_FN,&Petsc_ScaLAPACK_keyval,(void*)0);CHKERRQ(ierr); 1681 } 1682 ierr = PetscCommDuplicate(PetscObjectComm((PetscObject)A),&icomm,NULL);CHKERRQ(ierr); 1683 ierr = MPI_Comm_get_attr(icomm,Petsc_ScaLAPACK_keyval,(void**)&grid,(int*)&flg);CHKERRQ(ierr); 1684 if (!flg) { 1685 ierr = PetscNewLog(A,&grid);CHKERRQ(ierr); 1686 1687 ierr = MPI_Comm_size(icomm,&size);CHKERRQ(ierr); 1688 grid->nprow = (PetscInt) (PetscSqrtReal((PetscReal)size) + 0.001); 1689 1690 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"ScaLAPACK Grid Options","Mat");CHKERRQ(ierr); 1691 ierr = PetscOptionsInt("-mat_scalapack_grid_height","Grid Height","None",grid->nprow,&optv1,&flg1);CHKERRQ(ierr); 1692 if (flg1) { 1693 if (size % optv1) SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Grid Height %D must evenly divide CommSize %D",optv1,size); 1694 grid->nprow = optv1; 1695 } 1696 ierr = PetscOptionsEnd();CHKERRQ(ierr); 1697 1698 if (size % grid->nprow) grid->nprow = 1; /* cannot use a squarish grid, use a 1d grid */ 1699 grid->npcol = size/grid->nprow; 1700 ierr = PetscBLASIntCast(grid->nprow,&nprow);CHKERRQ(ierr); 1701 ierr = PetscBLASIntCast(grid->npcol,&npcol);CHKERRQ(ierr); 1702 Cblacs_get(-1,0,&grid->ictxt); 1703 Cblacs_gridinit(&grid->ictxt,"R",nprow,npcol); 1704 Cblacs_gridinfo(grid->ictxt,&nprow,&npcol,&myrow,&mycol); 1705 grid->grid_refct = 1; 1706 grid->nprow = nprow; 1707 grid->npcol = npcol; 1708 grid->myrow = myrow; 1709 grid->mycol = mycol; 1710 /* auxiliary 1d BLACS contexts for 1xsize and sizex1 grids */ 1711 Cblacs_get(-1,0,&grid->ictxrow); 1712 Cblacs_gridinit(&grid->ictxrow,"R",1,size); 1713 Cblacs_get(-1,0,&grid->ictxcol); 1714 Cblacs_gridinit(&grid->ictxcol,"R",size,1); 1715 ierr = MPI_Comm_set_attr(icomm,Petsc_ScaLAPACK_keyval,(void*)grid);CHKERRQ(ierr); 1716 1717 } else grid->grid_refct++; 1718 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1719 a->grid = grid; 1720 a->mb = DEFAULT_BLOCKSIZE; 1721 a->nb = DEFAULT_BLOCKSIZE; 1722 1723 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),NULL,"ScaLAPACK Options","Mat");CHKERRQ(ierr); 1724 ierr = PetscOptionsIntArray("-mat_scalapack_block_sizes","Size of the blocks to use (one or two comma-separated integers)","MatCreateScaLAPACK",array,&k,&flg);CHKERRQ(ierr); 1725 if (flg) { 1726 a->mb = array[0]; 1727 a->nb = (k>1)? array[1]: a->mb; 1728 } 1729 ierr = PetscOptionsEnd();CHKERRQ(ierr); 1730 1731 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",MatGetOwnershipIS_ScaLAPACK);CHKERRQ(ierr); 1732 ierr = PetscObjectComposeFunction((PetscObject)A,"MatScaLAPACKSetBlockSizes_C",MatScaLAPACKSetBlockSizes_ScaLAPACK);CHKERRQ(ierr); 1733 ierr = PetscObjectComposeFunction((PetscObject)A,"MatScaLAPACKGetBlockSizes_C",MatScaLAPACKGetBlockSizes_ScaLAPACK);CHKERRQ(ierr); 1734 ierr = PetscObjectChangeTypeName((PetscObject)A,MATSCALAPACK);CHKERRQ(ierr); 1735 PetscFunctionReturn(0); 1736 } 1737 1738 /*@C 1739 MatCreateScaLAPACK - Creates a dense parallel matrix in ScaLAPACK format 1740 (2D block cyclic distribution). 1741 1742 Collective 1743 1744 Input Parameters: 1745 + comm - MPI communicator 1746 . mb - row block size (or PETSC_DECIDE to have it set) 1747 . nb - column block size (or PETSC_DECIDE to have it set) 1748 . M - number of global rows 1749 . N - number of global columns 1750 . rsrc - coordinate of process that owns the first row of the distributed matrix 1751 - csrc - coordinate of process that owns the first column of the distributed matrix 1752 1753 Output Parameter: 1754 . A - the matrix 1755 1756 Options Database Keys: 1757 . -mat_scalapack_block_sizes - size of the blocks to use (one or two integers separated by comma) 1758 1759 It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1760 MatXXXXSetPreallocation() paradigm instead of this routine directly. 1761 [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1762 1763 Notes: 1764 If PETSC_DECIDE is used for the block sizes, then an appropriate value 1765 is chosen. 1766 1767 Storage Information: 1768 Storate is completely managed by ScaLAPACK, so this requires PETSc to be 1769 configured with ScaLAPACK. In particular, PETSc's local sizes lose 1770 significance and are thus ignored. The block sizes refer to the values 1771 used for the distributed matrix, not the same meaning as in BAIJ. 1772 1773 Level: intermediate 1774 1775 .seealso: MatCreate(), MatCreateDense(), MatSetValues() 1776 @*/ 1777 PetscErrorCode MatCreateScaLAPACK(MPI_Comm comm,PetscInt mb,PetscInt nb,PetscInt M,PetscInt N,PetscInt rsrc,PetscInt csrc,Mat *A) 1778 { 1779 PetscErrorCode ierr; 1780 Mat_ScaLAPACK *a; 1781 PetscInt m,n; 1782 1783 PetscFunctionBegin; 1784 ierr = MatCreate(comm,A);CHKERRQ(ierr); 1785 ierr = MatSetType(*A,MATSCALAPACK);CHKERRQ(ierr); 1786 if (M==PETSC_DECIDE || N==PETSC_DECIDE) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot use PETSC_DECIDE for matrix dimensions"); 1787 /* rows and columns are NOT distributed according to PetscSplitOwnership */ 1788 m = PETSC_DECIDE; 1789 ierr = PetscSplitOwnershipEqual(comm,&m,&M);CHKERRQ(ierr); 1790 n = PETSC_DECIDE; 1791 ierr = PetscSplitOwnershipEqual(comm,&n,&N);CHKERRQ(ierr); 1792 ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1793 a = (Mat_ScaLAPACK*)(*A)->data; 1794 ierr = PetscBLASIntCast(M,&a->M);CHKERRQ(ierr); 1795 ierr = PetscBLASIntCast(N,&a->N);CHKERRQ(ierr); 1796 ierr = PetscBLASIntCast((mb==PETSC_DECIDE)?DEFAULT_BLOCKSIZE:mb,&a->mb);CHKERRQ(ierr); 1797 ierr = PetscBLASIntCast((nb==PETSC_DECIDE)?a->mb:nb,&a->nb);CHKERRQ(ierr); 1798 ierr = PetscBLASIntCast(rsrc,&a->rsrc);CHKERRQ(ierr); 1799 ierr = PetscBLASIntCast(csrc,&a->csrc);CHKERRQ(ierr); 1800 ierr = MatSetUp(*A);CHKERRQ(ierr); 1801 PetscFunctionReturn(0); 1802 } 1803 1804