xref: /petsc/src/mat/impls/sell/mpi/mpisell.c (revision 2c71b3e237ead271e4f3aa1505f92bf476e3413d)
1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>   /*I "petscmat.h" I*/
2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h>   /*I "petscmat.h" I*/
3d4002b98SHong Zhang #include <petsc/private/vecimpl.h>
4d4002b98SHong Zhang #include <petsc/private/isimpl.h>
5d4002b98SHong Zhang #include <petscblaslapack.h>
6d4002b98SHong Zhang #include <petscsf.h>
7d4002b98SHong Zhang 
8d4002b98SHong Zhang /*MC
9d4002b98SHong Zhang    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices.
10d4002b98SHong Zhang 
11d4002b98SHong Zhang    This matrix type is identical to MATSEQSELL when constructed with a single process communicator,
12d4002b98SHong Zhang    and MATMPISELL otherwise.  As a result, for single process communicators,
13d4002b98SHong Zhang   MatSeqSELLSetPreallocation is supported, and similarly MatMPISELLSetPreallocation is supported
14d4002b98SHong Zhang   for communicators controlling multiple processes.  It is recommended that you call both of
15d4002b98SHong Zhang   the above preallocation routines for simplicity.
16d4002b98SHong Zhang 
17d4002b98SHong Zhang    Options Database Keys:
18d4002b98SHong Zhang . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
19d4002b98SHong Zhang 
20d4002b98SHong Zhang   Level: beginner
21d4002b98SHong Zhang 
22d4002b98SHong Zhang .seealso: MatCreateSELL(), MatCreateSeqSELL(), MATSEQSELL, MATMPISELL
23d4002b98SHong Zhang M*/
24d4002b98SHong Zhang 
25d4002b98SHong Zhang PetscErrorCode MatDiagonalSet_MPISELL(Mat Y,Vec D,InsertMode is)
26d4002b98SHong Zhang {
27d4002b98SHong Zhang   PetscErrorCode ierr;
28d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)Y->data;
29d4002b98SHong Zhang 
30d4002b98SHong Zhang   PetscFunctionBegin;
31d4002b98SHong Zhang   if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) {
32d4002b98SHong Zhang     ierr = MatDiagonalSet(sell->A,D,is);CHKERRQ(ierr);
33d4002b98SHong Zhang   } else {
34d4002b98SHong Zhang     ierr = MatDiagonalSet_Default(Y,D,is);CHKERRQ(ierr);
35d4002b98SHong Zhang   }
36d4002b98SHong Zhang   PetscFunctionReturn(0);
37d4002b98SHong Zhang }
38d4002b98SHong Zhang 
39d4002b98SHong Zhang /*
40d4002b98SHong Zhang   Local utility routine that creates a mapping from the global column
41d4002b98SHong Zhang number to the local number in the off-diagonal part of the local
42d4002b98SHong Zhang storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
43d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor
44d4002b98SHong Zhang has an order N integer array but is fast to acess.
45d4002b98SHong Zhang */
46d4002b98SHong Zhang PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat)
47d4002b98SHong Zhang {
48d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
49d4002b98SHong Zhang   PetscErrorCode ierr;
50d4002b98SHong Zhang   PetscInt       n=sell->B->cmap->n,i;
51d4002b98SHong Zhang 
52d4002b98SHong Zhang   PetscFunctionBegin;
53*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!sell->garray,PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPISELL Matrix was assembled but is missing garray");
54d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
55d4002b98SHong Zhang   ierr = PetscTableCreate(n,mat->cmap->N+1,&sell->colmap);CHKERRQ(ierr);
56d4002b98SHong Zhang   for (i=0; i<n; i++) {
57d4002b98SHong Zhang     ierr = PetscTableAdd(sell->colmap,sell->garray[i]+1,i+1,INSERT_VALUES);CHKERRQ(ierr);
58d4002b98SHong Zhang   }
59d4002b98SHong Zhang #else
60d4002b98SHong Zhang   ierr = PetscCalloc1(mat->cmap->N+1,&sell->colmap);CHKERRQ(ierr);
61d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N+1)*sizeof(PetscInt));CHKERRQ(ierr);
62d4002b98SHong Zhang   for (i=0; i<n; i++) sell->colmap[sell->garray[i]] = i+1;
63d4002b98SHong Zhang #endif
64d4002b98SHong Zhang   PetscFunctionReturn(0);
65d4002b98SHong Zhang }
66d4002b98SHong Zhang 
67d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row,col,value,addv,orow,ocol) \
68d4002b98SHong Zhang   { \
69d4002b98SHong Zhang     if (col <= lastcol1) low1 = 0; \
70d4002b98SHong Zhang     else                high1 = nrow1; \
71d4002b98SHong Zhang     lastcol1 = col; \
72d4002b98SHong Zhang     while (high1-low1 > 5) { \
73d4002b98SHong Zhang       t = (low1+high1)/2; \
74d4002b98SHong Zhang       if (*(cp1+8*t) > col) high1 = t; \
75d4002b98SHong Zhang       else                   low1 = t; \
76d4002b98SHong Zhang     } \
77d4002b98SHong Zhang     for (_i=low1; _i<high1; _i++) { \
78d4002b98SHong Zhang       if (*(cp1+8*_i) > col) break; \
79d4002b98SHong Zhang       if (*(cp1+8*_i) == col) { \
80d4002b98SHong Zhang         if (addv == ADD_VALUES) *(vp1+8*_i) += value;   \
81d4002b98SHong Zhang         else                     *(vp1+8*_i) = value; \
82d4002b98SHong Zhang         goto a_noinsert; \
83d4002b98SHong Zhang       } \
84d4002b98SHong Zhang     }  \
85d4002b98SHong Zhang     if (value == 0.0 && ignorezeroentries) {low1 = 0; high1 = nrow1;goto a_noinsert;} \
86d4002b98SHong Zhang     if (nonew == 1) {low1 = 0; high1 = nrow1; goto a_noinsert;} \
87*2c71b3e2SJacob Faibussowitsch     PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
88d4002b98SHong Zhang     MatSeqXSELLReallocateSELL(A,am,1,nrow1,a->sliidx,row/8,row,col,a->colidx,a->val,cp1,vp1,nonew,MatScalar); \
89d4002b98SHong Zhang     /* shift up all the later entries in this row */ \
90d4002b98SHong Zhang     for (ii=nrow1-1; ii>=_i; ii--) { \
91d4002b98SHong Zhang       *(cp1+8*(ii+1)) = *(cp1+8*ii); \
92d4002b98SHong Zhang       *(vp1+8*(ii+1)) = *(vp1+8*ii); \
93d4002b98SHong Zhang     } \
94d4002b98SHong Zhang     *(cp1+8*_i) = col; \
95d4002b98SHong Zhang     *(vp1+8*_i) = value; \
96d4002b98SHong Zhang     a->nz++; nrow1++; A->nonzerostate++; \
97d4002b98SHong Zhang     a_noinsert: ; \
98d4002b98SHong Zhang     a->rlen[row] = nrow1; \
99d4002b98SHong Zhang   }
100d4002b98SHong Zhang 
101d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row,col,value,addv,orow,ocol) \
102d4002b98SHong Zhang   { \
103d4002b98SHong Zhang     if (col <= lastcol2) low2 = 0; \
104d4002b98SHong Zhang     else                high2 = nrow2; \
105d4002b98SHong Zhang     lastcol2 = col; \
106d4002b98SHong Zhang     while (high2-low2 > 5) { \
107d4002b98SHong Zhang       t = (low2+high2)/2; \
108d4002b98SHong Zhang       if (*(cp2+8*t) > col) high2 = t; \
109d4002b98SHong Zhang       else low2  = t; \
110d4002b98SHong Zhang     } \
111d4002b98SHong Zhang     for (_i=low2; _i<high2; _i++) { \
112d4002b98SHong Zhang       if (*(cp2+8*_i) > col) break; \
113d4002b98SHong Zhang       if (*(cp2+8*_i) == col) { \
114d4002b98SHong Zhang         if (addv == ADD_VALUES) *(vp2+8*_i) += value; \
115d4002b98SHong Zhang         else                     *(vp2+8*_i) = value; \
116d4002b98SHong Zhang         goto b_noinsert; \
117d4002b98SHong Zhang       } \
118d4002b98SHong Zhang     } \
119d4002b98SHong Zhang     if (value == 0.0 && ignorezeroentries) {low2 = 0; high2 = nrow2; goto b_noinsert;} \
120d4002b98SHong Zhang     if (nonew == 1) {low2 = 0; high2 = nrow2; goto b_noinsert;} \
121*2c71b3e2SJacob Faibussowitsch     PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
122d4002b98SHong Zhang     MatSeqXSELLReallocateSELL(B,bm,1,nrow2,b->sliidx,row/8,row,col,b->colidx,b->val,cp2,vp2,nonew,MatScalar); \
123d4002b98SHong Zhang     /* shift up all the later entries in this row */ \
124d4002b98SHong Zhang     for (ii=nrow2-1; ii>=_i; ii--) { \
125d4002b98SHong Zhang       *(cp2+8*(ii+1)) = *(cp2+8*ii); \
126d4002b98SHong Zhang       *(vp2+8*(ii+1)) = *(vp2+8*ii); \
127d4002b98SHong Zhang     } \
128d4002b98SHong Zhang     *(cp2+8*_i) = col; \
129d4002b98SHong Zhang     *(vp2+8*_i) = value; \
130d4002b98SHong Zhang     b->nz++; nrow2++; B->nonzerostate++; \
131d4002b98SHong Zhang     b_noinsert: ; \
132d4002b98SHong Zhang     b->rlen[row] = nrow2; \
133d4002b98SHong Zhang   }
134d4002b98SHong Zhang 
135d4002b98SHong Zhang PetscErrorCode MatSetValues_MPISELL(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
136d4002b98SHong Zhang {
137d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
138d4002b98SHong Zhang   PetscScalar    value;
139d4002b98SHong Zhang   PetscErrorCode ierr;
140d4002b98SHong Zhang   PetscInt       i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend,shift1,shift2;
141d4002b98SHong Zhang   PetscInt       cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col;
142d4002b98SHong Zhang   PetscBool      roworiented=sell->roworiented;
143d4002b98SHong Zhang 
144d4002b98SHong Zhang   /* Some Variables required in the macro */
145d4002b98SHong Zhang   Mat            A=sell->A;
146d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
147d4002b98SHong Zhang   PetscBool      ignorezeroentries=a->ignorezeroentries,found;
148d4002b98SHong Zhang   Mat            B=sell->B;
149d4002b98SHong Zhang   Mat_SeqSELL    *b=(Mat_SeqSELL*)B->data;
150d4002b98SHong Zhang   PetscInt       *cp1,*cp2,ii,_i,nrow1,nrow2,low1,high1,low2,high2,t,lastcol1,lastcol2;
151d4002b98SHong Zhang   MatScalar      *vp1,*vp2;
152d4002b98SHong Zhang 
153d4002b98SHong Zhang   PetscFunctionBegin;
154d4002b98SHong Zhang   for (i=0; i<m; i++) {
155d4002b98SHong Zhang     if (im[i] < 0) continue;
156*2c71b3e2SJacob Faibussowitsch     PetscAssertFalse(im[i] >= mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
157d4002b98SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
158d4002b98SHong Zhang       row      = im[i] - rstart;
159d4002b98SHong Zhang       lastcol1 = -1;
160d4002b98SHong Zhang       shift1   = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
161d4002b98SHong Zhang       cp1      = a->colidx+shift1;
162d4002b98SHong Zhang       vp1      = a->val+shift1;
163d4002b98SHong Zhang       nrow1    = a->rlen[row];
164d4002b98SHong Zhang       low1     = 0;
165d4002b98SHong Zhang       high1    = nrow1;
166d4002b98SHong Zhang       lastcol2 = -1;
167d4002b98SHong Zhang       shift2   = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */
168d4002b98SHong Zhang       cp2      = b->colidx+shift2;
169d4002b98SHong Zhang       vp2      = b->val+shift2;
170d4002b98SHong Zhang       nrow2    = b->rlen[row];
171d4002b98SHong Zhang       low2     = 0;
172d4002b98SHong Zhang       high2    = nrow2;
173d4002b98SHong Zhang 
174d4002b98SHong Zhang       for (j=0; j<n; j++) {
175d4002b98SHong Zhang         if (roworiented) value = v[i*n+j];
176d4002b98SHong Zhang         else             value = v[i+j*m];
177d4002b98SHong Zhang         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue;
178d4002b98SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
179d4002b98SHong Zhang           col   = in[j] - cstart;
180d4002b98SHong Zhang           MatSetValue_SeqSELL_Private(A,row,col,value,addv,im[i],in[j],cp1,vp1,lastcol1,low1,high1); /* set one value */
181d4002b98SHong Zhang         } else if (in[j] < 0) continue;
182*2c71b3e2SJacob Faibussowitsch         else PetscAssertFalse(in[j] >= mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
183d4002b98SHong Zhang         else {
184d4002b98SHong Zhang           if (mat->was_assembled) {
185d4002b98SHong Zhang             if (!sell->colmap) {
186d4002b98SHong Zhang               ierr = MatCreateColmap_MPISELL_Private(mat);CHKERRQ(ierr);
187d4002b98SHong Zhang             }
188d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
189d4002b98SHong Zhang             ierr = PetscTableFind(sell->colmap,in[j]+1,&col);CHKERRQ(ierr);
190d4002b98SHong Zhang             col--;
191d4002b98SHong Zhang #else
192d4002b98SHong Zhang             col = sell->colmap[in[j]] - 1;
193d4002b98SHong Zhang #endif
194d4002b98SHong Zhang             if (col < 0 && !((Mat_SeqSELL*)(sell->B->data))->nonew) {
195d4002b98SHong Zhang               ierr   = MatDisAssemble_MPISELL(mat);CHKERRQ(ierr);
196d4002b98SHong Zhang               col    = in[j];
197d4002b98SHong Zhang               /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */
198d4002b98SHong Zhang               B      = sell->B;
199d4002b98SHong Zhang               b      = (Mat_SeqSELL*)B->data;
200d4002b98SHong Zhang               shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */
201d4002b98SHong Zhang               cp2    = b->colidx+shift2;
202d4002b98SHong Zhang               vp2    = b->val+shift2;
203d4002b98SHong Zhang               nrow2  = b->rlen[row];
204d4002b98SHong Zhang               low2   = 0;
205d4002b98SHong Zhang               high2  = nrow2;
206*2c71b3e2SJacob Faibussowitsch             } else PetscCheckFalse(col < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
207d4002b98SHong Zhang           } else col = in[j];
208d4002b98SHong Zhang           MatSetValue_SeqSELL_Private(B,row,col,value,addv,im[i],in[j],cp2,vp2,lastcol2,low2,high2); /* set one value */
209d4002b98SHong Zhang         }
210d4002b98SHong Zhang       }
211d4002b98SHong Zhang     } else {
212*2c71b3e2SJacob Faibussowitsch       PetscCheckFalse(mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
213d4002b98SHong Zhang       if (!sell->donotstash) {
214d4002b98SHong Zhang         mat->assembled = PETSC_FALSE;
215d4002b98SHong Zhang         if (roworiented) {
216d4002b98SHong Zhang           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)));CHKERRQ(ierr);
217d4002b98SHong Zhang         } else {
218d4002b98SHong Zhang           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)));CHKERRQ(ierr);
219d4002b98SHong Zhang         }
220d4002b98SHong Zhang       }
221d4002b98SHong Zhang     }
222d4002b98SHong Zhang   }
223d4002b98SHong Zhang   PetscFunctionReturn(0);
224d4002b98SHong Zhang }
225d4002b98SHong Zhang 
226d4002b98SHong Zhang PetscErrorCode MatGetValues_MPISELL(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
227d4002b98SHong Zhang {
228d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
229d4002b98SHong Zhang   PetscErrorCode ierr;
230d4002b98SHong Zhang   PetscInt       i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend;
231d4002b98SHong Zhang   PetscInt       cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col;
232d4002b98SHong Zhang 
233d4002b98SHong Zhang   PetscFunctionBegin;
234d4002b98SHong Zhang   for (i=0; i<m; i++) {
23598921bdaSJacob Faibussowitsch     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %" PetscInt_FMT,idxm[i]);*/
236*2c71b3e2SJacob Faibussowitsch     PetscCheckFalse(idxm[i] >= mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
237d4002b98SHong Zhang     if (idxm[i] >= rstart && idxm[i] < rend) {
238d4002b98SHong Zhang       row = idxm[i] - rstart;
239d4002b98SHong Zhang       for (j=0; j<n; j++) {
24098921bdaSJacob Faibussowitsch         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %" PetscInt_FMT,idxn[j]); */
241*2c71b3e2SJacob Faibussowitsch         PetscCheckFalse(idxn[j] >= mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
242d4002b98SHong Zhang         if (idxn[j] >= cstart && idxn[j] < cend) {
243d4002b98SHong Zhang           col  = idxn[j] - cstart;
244d4002b98SHong Zhang           ierr = MatGetValues(sell->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
245d4002b98SHong Zhang         } else {
246d4002b98SHong Zhang           if (!sell->colmap) {
247d4002b98SHong Zhang             ierr = MatCreateColmap_MPISELL_Private(mat);CHKERRQ(ierr);
248d4002b98SHong Zhang           }
249d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
250d4002b98SHong Zhang           ierr = PetscTableFind(sell->colmap,idxn[j]+1,&col);CHKERRQ(ierr);
251d4002b98SHong Zhang           col--;
252d4002b98SHong Zhang #else
253d4002b98SHong Zhang           col = sell->colmap[idxn[j]] - 1;
254d4002b98SHong Zhang #endif
255d4002b98SHong Zhang           if ((col < 0) || (sell->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
256d4002b98SHong Zhang           else {
257d4002b98SHong Zhang             ierr = MatGetValues(sell->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
258d4002b98SHong Zhang           }
259d4002b98SHong Zhang         }
260d4002b98SHong Zhang       }
261d4002b98SHong Zhang     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
262d4002b98SHong Zhang   }
263d4002b98SHong Zhang   PetscFunctionReturn(0);
264d4002b98SHong Zhang }
265d4002b98SHong Zhang 
266d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat,Vec,Vec);
267d4002b98SHong Zhang 
268d4002b98SHong Zhang PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat,MatAssemblyType mode)
269d4002b98SHong Zhang {
270d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
271d4002b98SHong Zhang   PetscErrorCode ierr;
272d4002b98SHong Zhang   PetscInt       nstash,reallocs;
273d4002b98SHong Zhang 
274d4002b98SHong Zhang   PetscFunctionBegin;
275d4002b98SHong Zhang   if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
276d4002b98SHong Zhang 
277d4002b98SHong Zhang   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
278d4002b98SHong Zhang   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
2797d3de750SJacob Faibussowitsch   ierr = PetscInfo(sell->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
280d4002b98SHong Zhang   PetscFunctionReturn(0);
281d4002b98SHong Zhang }
282d4002b98SHong Zhang 
283d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat,MatAssemblyType mode)
284d4002b98SHong Zhang {
285d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
286d4002b98SHong Zhang   PetscErrorCode ierr;
287d4002b98SHong Zhang   PetscMPIInt    n;
288d4002b98SHong Zhang   PetscInt       i,flg;
289d4002b98SHong Zhang   PetscInt       *row,*col;
290d4002b98SHong Zhang   PetscScalar    *val;
291d4002b98SHong Zhang   PetscBool      other_disassembled;
292d4002b98SHong Zhang   /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */
293d4002b98SHong Zhang   PetscFunctionBegin;
294d4002b98SHong Zhang   if (!sell->donotstash && !mat->nooffprocentries) {
295d4002b98SHong Zhang     while (1) {
296d4002b98SHong Zhang       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
297d4002b98SHong Zhang       if (!flg) break;
298d4002b98SHong Zhang 
299d4002b98SHong Zhang       for (i=0; i<n; i++) { /* assemble one by one */
300d4002b98SHong Zhang         ierr = MatSetValues_MPISELL(mat,1,row+i,1,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
301d4002b98SHong Zhang       }
302d4002b98SHong Zhang     }
303d4002b98SHong Zhang     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
304d4002b98SHong Zhang   }
305d4002b98SHong Zhang   ierr = MatAssemblyBegin(sell->A,mode);CHKERRQ(ierr);
306d4002b98SHong Zhang   ierr = MatAssemblyEnd(sell->A,mode);CHKERRQ(ierr);
307d4002b98SHong Zhang 
308d4002b98SHong Zhang   /*
309d4002b98SHong Zhang      determine if any processor has disassembled, if so we must
310d4002b98SHong Zhang      also disassemble ourselfs, in order that we may reassemble.
311d4002b98SHong Zhang   */
312d4002b98SHong Zhang   /*
313d4002b98SHong Zhang      if nonzero structure of submatrix B cannot change then we know that
314d4002b98SHong Zhang      no processor disassembled thus we can skip this stuff
315d4002b98SHong Zhang   */
316d4002b98SHong Zhang   if (!((Mat_SeqSELL*)sell->B->data)->nonew) {
317820f2d46SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRMPI(ierr);
318*2c71b3e2SJacob Faibussowitsch     PetscCheckFalse(mat->was_assembled && !other_disassembled,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatDisAssemble not implemented yet");
319d4002b98SHong Zhang   }
320d4002b98SHong Zhang   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
321d4002b98SHong Zhang     ierr = MatSetUpMultiply_MPISELL(mat);CHKERRQ(ierr);
322d4002b98SHong Zhang   }
323d4002b98SHong Zhang   /*
324d4002b98SHong Zhang   ierr = MatSetOption(sell->B,MAT_USE_INODES,PETSC_FALSE);CHKERRQ(ierr);
325d4002b98SHong Zhang   */
326d4002b98SHong Zhang   ierr = MatAssemblyBegin(sell->B,mode);CHKERRQ(ierr);
327d4002b98SHong Zhang   ierr = MatAssemblyEnd(sell->B,mode);CHKERRQ(ierr);
328d4002b98SHong Zhang   ierr = PetscFree2(sell->rowvalues,sell->rowindices);CHKERRQ(ierr);
329f4259b30SLisandro Dalcin   sell->rowvalues = NULL;
330d4002b98SHong Zhang   ierr = VecDestroy(&sell->diag);CHKERRQ(ierr);
331d4002b98SHong Zhang 
332d4002b98SHong Zhang   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
333d4002b98SHong Zhang   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL*)(sell->A->data))->nonew) {
334d4002b98SHong Zhang     PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate;
335820f2d46SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRMPI(ierr);
336d4002b98SHong Zhang   }
337d4002b98SHong Zhang   PetscFunctionReturn(0);
338d4002b98SHong Zhang }
339d4002b98SHong Zhang 
340d4002b98SHong Zhang PetscErrorCode MatZeroEntries_MPISELL(Mat A)
341d4002b98SHong Zhang {
342d4002b98SHong Zhang   Mat_MPISELL    *l=(Mat_MPISELL*)A->data;
343d4002b98SHong Zhang   PetscErrorCode ierr;
344d4002b98SHong Zhang 
345d4002b98SHong Zhang   PetscFunctionBegin;
346d4002b98SHong Zhang   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
347d4002b98SHong Zhang   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
348d4002b98SHong Zhang   PetscFunctionReturn(0);
349d4002b98SHong Zhang }
350d4002b98SHong Zhang 
351d4002b98SHong Zhang PetscErrorCode MatMult_MPISELL(Mat A,Vec xx,Vec yy)
352d4002b98SHong Zhang {
353d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
354d4002b98SHong Zhang   PetscErrorCode ierr;
355d4002b98SHong Zhang   PetscInt       nt;
356d4002b98SHong Zhang 
357d4002b98SHong Zhang   PetscFunctionBegin;
358d4002b98SHong Zhang   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
359*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(nt != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",A->cmap->n,nt);
360d4002b98SHong Zhang   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
361d4002b98SHong Zhang   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
362d4002b98SHong Zhang   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
363d4002b98SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
364d4002b98SHong Zhang   PetscFunctionReturn(0);
365d4002b98SHong Zhang }
366d4002b98SHong Zhang 
367d4002b98SHong Zhang PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A,Vec bb,Vec xx)
368d4002b98SHong Zhang {
369d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
370d4002b98SHong Zhang   PetscErrorCode ierr;
371d4002b98SHong Zhang 
372d4002b98SHong Zhang   PetscFunctionBegin;
373d4002b98SHong Zhang   ierr = MatMultDiagonalBlock(a->A,bb,xx);CHKERRQ(ierr);
374d4002b98SHong Zhang   PetscFunctionReturn(0);
375d4002b98SHong Zhang }
376d4002b98SHong Zhang 
377d4002b98SHong Zhang PetscErrorCode MatMultAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz)
378d4002b98SHong Zhang {
379d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
380d4002b98SHong Zhang   PetscErrorCode ierr;
381d4002b98SHong Zhang 
382d4002b98SHong Zhang   PetscFunctionBegin;
383d4002b98SHong Zhang   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
384d4002b98SHong Zhang   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
385d4002b98SHong Zhang   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
386d4002b98SHong Zhang   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
387d4002b98SHong Zhang   PetscFunctionReturn(0);
388d4002b98SHong Zhang }
389d4002b98SHong Zhang 
390d4002b98SHong Zhang PetscErrorCode MatMultTranspose_MPISELL(Mat A,Vec xx,Vec yy)
391d4002b98SHong Zhang {
392d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
393d4002b98SHong Zhang   PetscErrorCode ierr;
394d4002b98SHong Zhang 
395d4002b98SHong Zhang   PetscFunctionBegin;
396d4002b98SHong Zhang   /* do nondiagonal part */
397d4002b98SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
398d4002b98SHong Zhang   /* do local part */
399d4002b98SHong Zhang   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
400a29b4eb7SJunchao Zhang   /* add partial results together */
401d4002b98SHong Zhang   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
402d4002b98SHong Zhang   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
403d4002b98SHong Zhang   PetscFunctionReturn(0);
404d4002b98SHong Zhang }
405d4002b98SHong Zhang 
406d4002b98SHong Zhang PetscErrorCode MatIsTranspose_MPISELL(Mat Amat,Mat Bmat,PetscReal tol,PetscBool *f)
407d4002b98SHong Zhang {
408d4002b98SHong Zhang   MPI_Comm       comm;
409d4002b98SHong Zhang   Mat_MPISELL    *Asell=(Mat_MPISELL*)Amat->data,*Bsell;
410d4002b98SHong Zhang   Mat            Adia=Asell->A,Bdia,Aoff,Boff,*Aoffs,*Boffs;
411d4002b98SHong Zhang   IS             Me,Notme;
412d4002b98SHong Zhang   PetscErrorCode ierr;
413d4002b98SHong Zhang   PetscInt       M,N,first,last,*notme,i;
414d4002b98SHong Zhang   PetscMPIInt    size;
415d4002b98SHong Zhang 
416d4002b98SHong Zhang   PetscFunctionBegin;
417d4002b98SHong Zhang   /* Easy test: symmetric diagonal block */
418d4002b98SHong Zhang   Bsell = (Mat_MPISELL*)Bmat->data; Bdia = Bsell->A;
419d4002b98SHong Zhang   ierr = MatIsTranspose(Adia,Bdia,tol,f);CHKERRQ(ierr);
420d4002b98SHong Zhang   if (!*f) PetscFunctionReturn(0);
421d4002b98SHong Zhang   ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr);
422ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
423d4002b98SHong Zhang   if (size == 1) PetscFunctionReturn(0);
424d4002b98SHong Zhang 
425d4002b98SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
426d4002b98SHong Zhang   ierr = MatGetSize(Amat,&M,&N);CHKERRQ(ierr);
427d4002b98SHong Zhang   ierr = MatGetOwnershipRange(Amat,&first,&last);CHKERRQ(ierr);
428d4002b98SHong Zhang   ierr = PetscMalloc1(N-last+first,&notme);CHKERRQ(ierr);
429d4002b98SHong Zhang   for (i=0; i<first; i++) notme[i] = i;
430d4002b98SHong Zhang   for (i=last; i<M; i++) notme[i-last+first] = i;
431d4002b98SHong Zhang   ierr = ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,PETSC_COPY_VALUES,&Notme);CHKERRQ(ierr);
432d4002b98SHong Zhang   ierr = ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me);CHKERRQ(ierr);
433d4002b98SHong Zhang   ierr = MatCreateSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs);CHKERRQ(ierr);
434d4002b98SHong Zhang   Aoff = Aoffs[0];
435d4002b98SHong Zhang   ierr = MatCreateSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs);CHKERRQ(ierr);
436d4002b98SHong Zhang   Boff = Boffs[0];
437d4002b98SHong Zhang   ierr = MatIsTranspose(Aoff,Boff,tol,f);CHKERRQ(ierr);
438d4002b98SHong Zhang   ierr = MatDestroyMatrices(1,&Aoffs);CHKERRQ(ierr);
439d4002b98SHong Zhang   ierr = MatDestroyMatrices(1,&Boffs);CHKERRQ(ierr);
440d4002b98SHong Zhang   ierr = ISDestroy(&Me);CHKERRQ(ierr);
441d4002b98SHong Zhang   ierr = ISDestroy(&Notme);CHKERRQ(ierr);
442d4002b98SHong Zhang   ierr = PetscFree(notme);CHKERRQ(ierr);
443d4002b98SHong Zhang   PetscFunctionReturn(0);
444d4002b98SHong Zhang }
445d4002b98SHong Zhang 
446d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz)
447d4002b98SHong Zhang {
448d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
449d4002b98SHong Zhang   PetscErrorCode ierr;
450d4002b98SHong Zhang 
451d4002b98SHong Zhang   PetscFunctionBegin;
452d4002b98SHong Zhang   /* do nondiagonal part */
453d4002b98SHong Zhang   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
454d4002b98SHong Zhang   /* do local part */
455d4002b98SHong Zhang   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
456e4a140f6SJunchao Zhang   /* add partial results together */
457e4a140f6SJunchao Zhang   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
458d4002b98SHong Zhang   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
459d4002b98SHong Zhang   PetscFunctionReturn(0);
460d4002b98SHong Zhang }
461d4002b98SHong Zhang 
462d4002b98SHong Zhang /*
463d4002b98SHong Zhang   This only works correctly for square matrices where the subblock A->A is the
464d4002b98SHong Zhang    diagonal block
465d4002b98SHong Zhang */
466d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_MPISELL(Mat A,Vec v)
467d4002b98SHong Zhang {
468d4002b98SHong Zhang   PetscErrorCode ierr;
469d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
470d4002b98SHong Zhang 
471d4002b98SHong Zhang   PetscFunctionBegin;
472*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->N != A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
473*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->rstart != A->cmap->rstart || A->rmap->rend != A->cmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"row partition must equal col partition");
474d4002b98SHong Zhang   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
475d4002b98SHong Zhang   PetscFunctionReturn(0);
476d4002b98SHong Zhang }
477d4002b98SHong Zhang 
478d4002b98SHong Zhang PetscErrorCode MatScale_MPISELL(Mat A,PetscScalar aa)
479d4002b98SHong Zhang {
480d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
481d4002b98SHong Zhang   PetscErrorCode ierr;
482d4002b98SHong Zhang 
483d4002b98SHong Zhang   PetscFunctionBegin;
484d4002b98SHong Zhang   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
485d4002b98SHong Zhang   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
486d4002b98SHong Zhang   PetscFunctionReturn(0);
487d4002b98SHong Zhang }
488d4002b98SHong Zhang 
489d4002b98SHong Zhang PetscErrorCode MatDestroy_MPISELL(Mat mat)
490d4002b98SHong Zhang {
491d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
492d4002b98SHong Zhang   PetscErrorCode ierr;
493d4002b98SHong Zhang 
494d4002b98SHong Zhang   PetscFunctionBegin;
495d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
496c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
497d4002b98SHong Zhang #endif
498d4002b98SHong Zhang   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
499d4002b98SHong Zhang   ierr = VecDestroy(&sell->diag);CHKERRQ(ierr);
500d4002b98SHong Zhang   ierr = MatDestroy(&sell->A);CHKERRQ(ierr);
501d4002b98SHong Zhang   ierr = MatDestroy(&sell->B);CHKERRQ(ierr);
502d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
503d4002b98SHong Zhang   ierr = PetscTableDestroy(&sell->colmap);CHKERRQ(ierr);
504d4002b98SHong Zhang #else
505d4002b98SHong Zhang   ierr = PetscFree(sell->colmap);CHKERRQ(ierr);
506d4002b98SHong Zhang #endif
507d4002b98SHong Zhang   ierr = PetscFree(sell->garray);CHKERRQ(ierr);
508d4002b98SHong Zhang   ierr = VecDestroy(&sell->lvec);CHKERRQ(ierr);
509d4002b98SHong Zhang   ierr = VecScatterDestroy(&sell->Mvctx);CHKERRQ(ierr);
510d4002b98SHong Zhang   ierr = PetscFree2(sell->rowvalues,sell->rowindices);CHKERRQ(ierr);
511d4002b98SHong Zhang   ierr = PetscFree(sell->ld);CHKERRQ(ierr);
512d4002b98SHong Zhang   ierr = PetscFree(mat->data);CHKERRQ(ierr);
513d4002b98SHong Zhang 
514f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
515d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
516d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
517d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C",NULL);CHKERRQ(ierr);
518d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPISELLSetPreallocation_C",NULL);CHKERRQ(ierr);
519d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisell_mpiaij_C",NULL);CHKERRQ(ierr);
520d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
521d4002b98SHong Zhang   PetscFunctionReturn(0);
522d4002b98SHong Zhang }
523d4002b98SHong Zhang 
524d4002b98SHong Zhang #include <petscdraw.h>
525d4002b98SHong Zhang PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
526d4002b98SHong Zhang {
527d4002b98SHong Zhang   Mat_MPISELL       *sell=(Mat_MPISELL*)mat->data;
528d4002b98SHong Zhang   PetscErrorCode    ierr;
529d4002b98SHong Zhang   PetscMPIInt       rank=sell->rank,size=sell->size;
530d4002b98SHong Zhang   PetscBool         isdraw,iascii,isbinary;
531d4002b98SHong Zhang   PetscViewer       sviewer;
532d4002b98SHong Zhang   PetscViewerFormat format;
533d4002b98SHong Zhang 
534d4002b98SHong Zhang   PetscFunctionBegin;
535d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
536d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
537d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
538d4002b98SHong Zhang   if (iascii) {
539d4002b98SHong Zhang     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
540d4002b98SHong Zhang     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
541d4002b98SHong Zhang       MatInfo   info;
5426335e310SSatish Balay       PetscInt *inodes;
543d4002b98SHong Zhang 
544ffc4695bSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr);
545d4002b98SHong Zhang       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
5466335e310SSatish Balay       ierr = MatInodeGetInodeSizes(sell->A,NULL,&inodes,NULL);CHKERRQ(ierr);
547d4002b98SHong Zhang       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
548d4002b98SHong Zhang       if (!inodes) {
549c0aa6a63SJacob Faibussowitsch         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n",
550d4002b98SHong Zhang                                                   rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
551d4002b98SHong Zhang       } else {
552c0aa6a63SJacob Faibussowitsch         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n",
553d4002b98SHong Zhang                                                   rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
554d4002b98SHong Zhang       }
555d4002b98SHong Zhang       ierr = MatGetInfo(sell->A,MAT_LOCAL,&info);CHKERRQ(ierr);
556c0aa6a63SJacob Faibussowitsch       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
557d4002b98SHong Zhang       ierr = MatGetInfo(sell->B,MAT_LOCAL,&info);CHKERRQ(ierr);
558c0aa6a63SJacob Faibussowitsch       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
559d4002b98SHong Zhang       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
560d4002b98SHong Zhang       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
561d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
562d4002b98SHong Zhang       ierr = VecScatterView(sell->Mvctx,viewer);CHKERRQ(ierr);
563d4002b98SHong Zhang       PetscFunctionReturn(0);
564d4002b98SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_INFO) {
565d4002b98SHong Zhang       PetscInt inodecount,inodelimit,*inodes;
566d4002b98SHong Zhang       ierr = MatInodeGetInodeSizes(sell->A,&inodecount,&inodes,&inodelimit);CHKERRQ(ierr);
567d4002b98SHong Zhang       if (inodes) {
568c0aa6a63SJacob Faibussowitsch         ierr = PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n",inodecount,inodelimit);CHKERRQ(ierr);
569d4002b98SHong Zhang       } else {
570d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n");CHKERRQ(ierr);
571d4002b98SHong Zhang       }
572d4002b98SHong Zhang       PetscFunctionReturn(0);
573d4002b98SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
574d4002b98SHong Zhang       PetscFunctionReturn(0);
575d4002b98SHong Zhang     }
576d4002b98SHong Zhang   } else if (isbinary) {
577d4002b98SHong Zhang     if (size == 1) {
578d4002b98SHong Zhang       ierr = PetscObjectSetName((PetscObject)sell->A,((PetscObject)mat)->name);CHKERRQ(ierr);
579d4002b98SHong Zhang       ierr = MatView(sell->A,viewer);CHKERRQ(ierr);
580d4002b98SHong Zhang     } else {
581d4002b98SHong Zhang       /* ierr = MatView_MPISELL_Binary(mat,viewer);CHKERRQ(ierr); */
582d4002b98SHong Zhang     }
583d4002b98SHong Zhang     PetscFunctionReturn(0);
584d4002b98SHong Zhang   } else if (isdraw) {
585d4002b98SHong Zhang     PetscDraw draw;
586d4002b98SHong Zhang     PetscBool isnull;
587d4002b98SHong Zhang     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
588d4002b98SHong Zhang     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
589d4002b98SHong Zhang     if (isnull) PetscFunctionReturn(0);
590d4002b98SHong Zhang   }
591d4002b98SHong Zhang 
592d4002b98SHong Zhang   {
593d4002b98SHong Zhang     /* assemble the entire matrix onto first processor. */
594d4002b98SHong Zhang     Mat         A;
595d4002b98SHong Zhang     Mat_SeqSELL *Aloc;
596d4002b98SHong Zhang     PetscInt    M=mat->rmap->N,N=mat->cmap->N,*acolidx,row,col,i,j;
597d4002b98SHong Zhang     MatScalar   *aval;
598d4002b98SHong Zhang     PetscBool   isnonzero;
599d4002b98SHong Zhang 
600d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
601dd400576SPatrick Sanan     if (rank == 0) {
602d4002b98SHong Zhang       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
603d4002b98SHong Zhang     } else {
604d4002b98SHong Zhang       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
605d4002b98SHong Zhang     }
606d4002b98SHong Zhang     /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */
607d4002b98SHong Zhang     ierr = MatSetType(A,MATMPISELL);CHKERRQ(ierr);
608d4002b98SHong Zhang     ierr = MatMPISELLSetPreallocation(A,0,NULL,0,NULL);CHKERRQ(ierr);
609d4002b98SHong Zhang     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
610d4002b98SHong Zhang     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
611d4002b98SHong Zhang 
612d4002b98SHong Zhang     /* copy over the A part */
613d4002b98SHong Zhang     Aloc = (Mat_SeqSELL*)sell->A->data;
614d4002b98SHong Zhang     acolidx = Aloc->colidx; aval = Aloc->val;
615d4002b98SHong Zhang     for (i=0; i<Aloc->totalslices; i++) { /* loop over slices */
616d4002b98SHong Zhang       for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) {
617d4002b98SHong Zhang         isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]);
618d4002b98SHong Zhang         if (isnonzero) { /* check the mask bit */
619d4002b98SHong Zhang           row  = (i<<3)+(j&0x07) + mat->rmap->rstart; /* i<<3 is the starting row of this slice */
620d4002b98SHong Zhang           col  = *acolidx + mat->rmap->rstart;
621d4002b98SHong Zhang           ierr = MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES);CHKERRQ(ierr);
622d4002b98SHong Zhang         }
623d4002b98SHong Zhang         aval++; acolidx++;
624d4002b98SHong Zhang       }
625d4002b98SHong Zhang     }
626d4002b98SHong Zhang 
627d4002b98SHong Zhang     /* copy over the B part */
628d4002b98SHong Zhang     Aloc = (Mat_SeqSELL*)sell->B->data;
629d4002b98SHong Zhang     acolidx = Aloc->colidx; aval = Aloc->val;
630d4002b98SHong Zhang     for (i=0; i<Aloc->totalslices; i++) {
631d4002b98SHong Zhang       for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) {
632d4002b98SHong Zhang         isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]);
633d4002b98SHong Zhang         if (isnonzero) {
634d4002b98SHong Zhang           row  = (i<<3)+(j&0x07) + mat->rmap->rstart;
635d4002b98SHong Zhang           col  = sell->garray[*acolidx];
636d4002b98SHong Zhang           ierr = MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES);CHKERRQ(ierr);
637d4002b98SHong Zhang         }
638d4002b98SHong Zhang         aval++; acolidx++;
639d4002b98SHong Zhang       }
640d4002b98SHong Zhang     }
641d4002b98SHong Zhang 
642d4002b98SHong Zhang     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
643d4002b98SHong Zhang     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
644d4002b98SHong Zhang     /*
645d4002b98SHong Zhang        Everyone has to call to draw the matrix since the graphics waits are
646d4002b98SHong Zhang        synchronized across all processors that share the PetscDraw object
647d4002b98SHong Zhang     */
648d4002b98SHong Zhang     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
649dd400576SPatrick Sanan     if (rank == 0) {
650d4002b98SHong Zhang       ierr = PetscObjectSetName((PetscObject)((Mat_MPISELL*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
651d4002b98SHong Zhang       ierr = MatView_SeqSELL(((Mat_MPISELL*)(A->data))->A,sviewer);CHKERRQ(ierr);
652d4002b98SHong Zhang     }
653d4002b98SHong Zhang     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
654d4002b98SHong Zhang     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
655d4002b98SHong Zhang     ierr = MatDestroy(&A);CHKERRQ(ierr);
656d4002b98SHong Zhang   }
657d4002b98SHong Zhang   PetscFunctionReturn(0);
658d4002b98SHong Zhang }
659d4002b98SHong Zhang 
660d4002b98SHong Zhang PetscErrorCode MatView_MPISELL(Mat mat,PetscViewer viewer)
661d4002b98SHong Zhang {
662d4002b98SHong Zhang   PetscErrorCode ierr;
663d4002b98SHong Zhang   PetscBool      iascii,isdraw,issocket,isbinary;
664d4002b98SHong Zhang 
665d4002b98SHong Zhang   PetscFunctionBegin;
666d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
667d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
668d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
669d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
670d4002b98SHong Zhang   if (iascii || isdraw || isbinary || issocket) {
671d4002b98SHong Zhang     ierr = MatView_MPISELL_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
672d4002b98SHong Zhang   }
673d4002b98SHong Zhang   PetscFunctionReturn(0);
674d4002b98SHong Zhang }
675d4002b98SHong Zhang 
676d4002b98SHong Zhang PetscErrorCode MatGetGhosts_MPISELL(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
677d4002b98SHong Zhang {
678d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
679d4002b98SHong Zhang   PetscErrorCode ierr;
680d4002b98SHong Zhang 
681d4002b98SHong Zhang   PetscFunctionBegin;
682d4002b98SHong Zhang   ierr = MatGetSize(sell->B,NULL,nghosts);CHKERRQ(ierr);
683d4002b98SHong Zhang   if (ghosts) *ghosts = sell->garray;
684d4002b98SHong Zhang   PetscFunctionReturn(0);
685d4002b98SHong Zhang }
686d4002b98SHong Zhang 
687d4002b98SHong Zhang PetscErrorCode MatGetInfo_MPISELL(Mat matin,MatInfoType flag,MatInfo *info)
688d4002b98SHong Zhang {
689d4002b98SHong Zhang   Mat_MPISELL    *mat=(Mat_MPISELL*)matin->data;
690d4002b98SHong Zhang   Mat            A=mat->A,B=mat->B;
691d4002b98SHong Zhang   PetscErrorCode ierr;
6923966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
693d4002b98SHong Zhang 
694d4002b98SHong Zhang   PetscFunctionBegin;
695d4002b98SHong Zhang   info->block_size = 1.0;
696d4002b98SHong Zhang   ierr             = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
697d4002b98SHong Zhang 
698d4002b98SHong Zhang   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
699d4002b98SHong Zhang   isend[3] = info->memory;  isend[4] = info->mallocs;
700d4002b98SHong Zhang 
701d4002b98SHong Zhang   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
702d4002b98SHong Zhang 
703d4002b98SHong Zhang   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
704d4002b98SHong Zhang   isend[3] += info->memory;  isend[4] += info->mallocs;
705d4002b98SHong Zhang   if (flag == MAT_LOCAL) {
706d4002b98SHong Zhang     info->nz_used      = isend[0];
707d4002b98SHong Zhang     info->nz_allocated = isend[1];
708d4002b98SHong Zhang     info->nz_unneeded  = isend[2];
709d4002b98SHong Zhang     info->memory       = isend[3];
710d4002b98SHong Zhang     info->mallocs      = isend[4];
711d4002b98SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
712820f2d46SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRMPI(ierr);
713d4002b98SHong Zhang 
714d4002b98SHong Zhang     info->nz_used      = irecv[0];
715d4002b98SHong Zhang     info->nz_allocated = irecv[1];
716d4002b98SHong Zhang     info->nz_unneeded  = irecv[2];
717d4002b98SHong Zhang     info->memory       = irecv[3];
718d4002b98SHong Zhang     info->mallocs      = irecv[4];
719d4002b98SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
720820f2d46SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRMPI(ierr);
721d4002b98SHong Zhang 
722d4002b98SHong Zhang     info->nz_used      = irecv[0];
723d4002b98SHong Zhang     info->nz_allocated = irecv[1];
724d4002b98SHong Zhang     info->nz_unneeded  = irecv[2];
725d4002b98SHong Zhang     info->memory       = irecv[3];
726d4002b98SHong Zhang     info->mallocs      = irecv[4];
727d4002b98SHong Zhang   }
728d4002b98SHong Zhang   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
729d4002b98SHong Zhang   info->fill_ratio_needed = 0;
730d4002b98SHong Zhang   info->factor_mallocs    = 0;
731d4002b98SHong Zhang   PetscFunctionReturn(0);
732d4002b98SHong Zhang }
733d4002b98SHong Zhang 
734d4002b98SHong Zhang PetscErrorCode MatSetOption_MPISELL(Mat A,MatOption op,PetscBool flg)
735d4002b98SHong Zhang {
736d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
737d4002b98SHong Zhang   PetscErrorCode ierr;
738d4002b98SHong Zhang 
739d4002b98SHong Zhang   PetscFunctionBegin;
740d4002b98SHong Zhang   switch (op) {
741d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
742d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
743d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
744d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
745d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
746d4002b98SHong Zhang   case MAT_USE_INODES:
747d4002b98SHong Zhang   case MAT_IGNORE_ZERO_ENTRIES:
748d4002b98SHong Zhang     MatCheckPreallocated(A,1);
749d4002b98SHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
750d4002b98SHong Zhang     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
751d4002b98SHong Zhang     break;
752d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
753d4002b98SHong Zhang     MatCheckPreallocated(A,1);
754d4002b98SHong Zhang     a->roworiented = flg;
755d4002b98SHong Zhang 
756d4002b98SHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
757d4002b98SHong Zhang     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
758d4002b98SHong Zhang     break;
7598c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
760071fcb05SBarry Smith   case MAT_SORTED_FULL:
7617d3de750SJacob Faibussowitsch     ierr = PetscInfo(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
762d4002b98SHong Zhang     break;
763d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
764d4002b98SHong Zhang     a->donotstash = flg;
765d4002b98SHong Zhang     break;
766d4002b98SHong Zhang   case MAT_SPD:
767d4002b98SHong Zhang     A->spd_set = PETSC_TRUE;
768d4002b98SHong Zhang     A->spd     = flg;
769d4002b98SHong Zhang     if (flg) {
770d4002b98SHong Zhang       A->symmetric                  = PETSC_TRUE;
771d4002b98SHong Zhang       A->structurally_symmetric     = PETSC_TRUE;
772d4002b98SHong Zhang       A->symmetric_set              = PETSC_TRUE;
773d4002b98SHong Zhang       A->structurally_symmetric_set = PETSC_TRUE;
774d4002b98SHong Zhang     }
775d4002b98SHong Zhang     break;
776d4002b98SHong Zhang   case MAT_SYMMETRIC:
777d4002b98SHong Zhang     MatCheckPreallocated(A,1);
778d4002b98SHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
779d4002b98SHong Zhang     break;
780d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
781d4002b98SHong Zhang     MatCheckPreallocated(A,1);
782d4002b98SHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
783d4002b98SHong Zhang     break;
784d4002b98SHong Zhang   case MAT_HERMITIAN:
785d4002b98SHong Zhang     MatCheckPreallocated(A,1);
786d4002b98SHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
787d4002b98SHong Zhang     break;
788d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
789d4002b98SHong Zhang     MatCheckPreallocated(A,1);
790d4002b98SHong Zhang     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
791d4002b98SHong Zhang     break;
792d4002b98SHong Zhang   default:
79398921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
794d4002b98SHong Zhang   }
795d4002b98SHong Zhang   PetscFunctionReturn(0);
796d4002b98SHong Zhang }
797d4002b98SHong Zhang 
798d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_MPISELL(Mat mat,Vec ll,Vec rr)
799d4002b98SHong Zhang {
800d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
801d4002b98SHong Zhang   Mat            a=sell->A,b=sell->B;
802d4002b98SHong Zhang   PetscErrorCode ierr;
803d4002b98SHong Zhang   PetscInt       s1,s2,s3;
804d4002b98SHong Zhang 
805d4002b98SHong Zhang   PetscFunctionBegin;
806d4002b98SHong Zhang   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
807d4002b98SHong Zhang   if (rr) {
808d4002b98SHong Zhang     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
809*2c71b3e2SJacob Faibussowitsch     PetscCheckFalse(s1!=s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
810d4002b98SHong Zhang     /* Overlap communication with computation. */
811d4002b98SHong Zhang     ierr = VecScatterBegin(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
812d4002b98SHong Zhang   }
813d4002b98SHong Zhang   if (ll) {
814d4002b98SHong Zhang     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
815*2c71b3e2SJacob Faibussowitsch     PetscCheckFalse(s1!=s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
816f4259b30SLisandro Dalcin     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
817d4002b98SHong Zhang   }
818d4002b98SHong Zhang   /* scale  the diagonal block */
819d4002b98SHong Zhang   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
820d4002b98SHong Zhang 
821d4002b98SHong Zhang   if (rr) {
822d4002b98SHong Zhang     /* Do a scatter end and then right scale the off-diagonal block */
823d4002b98SHong Zhang     ierr = VecScatterEnd(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824f4259b30SLisandro Dalcin     ierr = (*b->ops->diagonalscale)(b,NULL,sell->lvec);CHKERRQ(ierr);
825d4002b98SHong Zhang   }
826d4002b98SHong Zhang   PetscFunctionReturn(0);
827d4002b98SHong Zhang }
828d4002b98SHong Zhang 
829d4002b98SHong Zhang PetscErrorCode MatSetUnfactored_MPISELL(Mat A)
830d4002b98SHong Zhang {
831d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
832d4002b98SHong Zhang   PetscErrorCode ierr;
833d4002b98SHong Zhang 
834d4002b98SHong Zhang   PetscFunctionBegin;
835d4002b98SHong Zhang   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
836d4002b98SHong Zhang   PetscFunctionReturn(0);
837d4002b98SHong Zhang }
838d4002b98SHong Zhang 
839d4002b98SHong Zhang PetscErrorCode MatEqual_MPISELL(Mat A,Mat B,PetscBool  *flag)
840d4002b98SHong Zhang {
841d4002b98SHong Zhang   Mat_MPISELL    *matB=(Mat_MPISELL*)B->data,*matA=(Mat_MPISELL*)A->data;
842d4002b98SHong Zhang   Mat            a,b,c,d;
843d4002b98SHong Zhang   PetscBool      flg;
844d4002b98SHong Zhang   PetscErrorCode ierr;
845d4002b98SHong Zhang 
846d4002b98SHong Zhang   PetscFunctionBegin;
847d4002b98SHong Zhang   a = matA->A; b = matA->B;
848d4002b98SHong Zhang   c = matB->A; d = matB->B;
849d4002b98SHong Zhang 
850d4002b98SHong Zhang   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
851d4002b98SHong Zhang   if (flg) {
852d4002b98SHong Zhang     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
853d4002b98SHong Zhang   }
854820f2d46SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
855d4002b98SHong Zhang   PetscFunctionReturn(0);
856d4002b98SHong Zhang }
857d4002b98SHong Zhang 
858d4002b98SHong Zhang PetscErrorCode MatCopy_MPISELL(Mat A,Mat B,MatStructure str)
859d4002b98SHong Zhang {
860d4002b98SHong Zhang   PetscErrorCode ierr;
861d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
862d4002b98SHong Zhang   Mat_MPISELL    *b=(Mat_MPISELL*)B->data;
863d4002b98SHong Zhang 
864d4002b98SHong Zhang   PetscFunctionBegin;
865d4002b98SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
866d4002b98SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
867d4002b98SHong Zhang     /* because of the column compression in the off-processor part of the matrix a->B,
868d4002b98SHong Zhang        the number of columns in a->B and b->B may be different, hence we cannot call
869d4002b98SHong Zhang        the MatCopy() directly on the two parts. If need be, we can provide a more
870d4002b98SHong Zhang        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
871d4002b98SHong Zhang        then copying the submatrices */
872d4002b98SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
873d4002b98SHong Zhang   } else {
874d4002b98SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
875d4002b98SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
876d4002b98SHong Zhang   }
877d4002b98SHong Zhang   PetscFunctionReturn(0);
878d4002b98SHong Zhang }
879d4002b98SHong Zhang 
880d4002b98SHong Zhang PetscErrorCode MatSetUp_MPISELL(Mat A)
881d4002b98SHong Zhang {
882d4002b98SHong Zhang   PetscErrorCode ierr;
883d4002b98SHong Zhang 
884d4002b98SHong Zhang   PetscFunctionBegin;
885f4259b30SLisandro Dalcin   ierr =  MatMPISELLSetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL);CHKERRQ(ierr);
886d4002b98SHong Zhang   PetscFunctionReturn(0);
887d4002b98SHong Zhang }
888d4002b98SHong Zhang 
889d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat);
890d4002b98SHong Zhang 
891d4002b98SHong Zhang PetscErrorCode MatConjugate_MPISELL(Mat mat)
892d4002b98SHong Zhang {
893d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
894d4002b98SHong Zhang   PetscErrorCode ierr;
895d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
896d4002b98SHong Zhang 
897d4002b98SHong Zhang   PetscFunctionBegin;
898d4002b98SHong Zhang   ierr = MatConjugate_SeqSELL(sell->A);CHKERRQ(ierr);
899d4002b98SHong Zhang   ierr = MatConjugate_SeqSELL(sell->B);CHKERRQ(ierr);
900d4002b98SHong Zhang #else
901d4002b98SHong Zhang   PetscFunctionBegin;
902d4002b98SHong Zhang #endif
903d4002b98SHong Zhang   PetscFunctionReturn(0);
904d4002b98SHong Zhang }
905d4002b98SHong Zhang 
906d4002b98SHong Zhang PetscErrorCode MatRealPart_MPISELL(Mat A)
907d4002b98SHong Zhang {
908d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
909d4002b98SHong Zhang   PetscErrorCode ierr;
910d4002b98SHong Zhang 
911d4002b98SHong Zhang   PetscFunctionBegin;
912d4002b98SHong Zhang   ierr = MatRealPart(a->A);CHKERRQ(ierr);
913d4002b98SHong Zhang   ierr = MatRealPart(a->B);CHKERRQ(ierr);
914d4002b98SHong Zhang   PetscFunctionReturn(0);
915d4002b98SHong Zhang }
916d4002b98SHong Zhang 
917d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_MPISELL(Mat A)
918d4002b98SHong Zhang {
919d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
920d4002b98SHong Zhang   PetscErrorCode ierr;
921d4002b98SHong Zhang 
922d4002b98SHong Zhang   PetscFunctionBegin;
923d4002b98SHong Zhang   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
924d4002b98SHong Zhang   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
925d4002b98SHong Zhang   PetscFunctionReturn(0);
926d4002b98SHong Zhang }
927d4002b98SHong Zhang 
928d4002b98SHong Zhang PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A,const PetscScalar **values)
929d4002b98SHong Zhang {
930d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
931d4002b98SHong Zhang   PetscErrorCode ierr;
932d4002b98SHong Zhang 
933d4002b98SHong Zhang   PetscFunctionBegin;
934d4002b98SHong Zhang   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
935d4002b98SHong Zhang   A->factorerrortype = a->A->factorerrortype;
936d4002b98SHong Zhang   PetscFunctionReturn(0);
937d4002b98SHong Zhang }
938d4002b98SHong Zhang 
939d4002b98SHong Zhang static PetscErrorCode MatSetRandom_MPISELL(Mat x,PetscRandom rctx)
940d4002b98SHong Zhang {
941d4002b98SHong Zhang   PetscErrorCode ierr;
942d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)x->data;
943d4002b98SHong Zhang 
944d4002b98SHong Zhang   PetscFunctionBegin;
945d4002b98SHong Zhang   ierr = MatSetRandom(sell->A,rctx);CHKERRQ(ierr);
946d4002b98SHong Zhang   ierr = MatSetRandom(sell->B,rctx);CHKERRQ(ierr);
947d4002b98SHong Zhang   ierr = MatAssemblyBegin(x,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
948d4002b98SHong Zhang   ierr = MatAssemblyEnd(x,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
949d4002b98SHong Zhang   PetscFunctionReturn(0);
950d4002b98SHong Zhang }
951d4002b98SHong Zhang 
952d4002b98SHong Zhang PetscErrorCode MatSetFromOptions_MPISELL(PetscOptionItems *PetscOptionsObject,Mat A)
953d4002b98SHong Zhang {
954d4002b98SHong Zhang   PetscErrorCode ierr;
955d4002b98SHong Zhang 
956d4002b98SHong Zhang   PetscFunctionBegin;
957d4002b98SHong Zhang   ierr = PetscOptionsHead(PetscOptionsObject,"MPISELL options");CHKERRQ(ierr);
9580af67c1bSStefano Zampini   ierr = PetscOptionsTail();CHKERRQ(ierr);
959d4002b98SHong Zhang   PetscFunctionReturn(0);
960d4002b98SHong Zhang }
961d4002b98SHong Zhang 
962d4002b98SHong Zhang PetscErrorCode MatShift_MPISELL(Mat Y,PetscScalar a)
963d4002b98SHong Zhang {
964d4002b98SHong Zhang   PetscErrorCode ierr;
965d4002b98SHong Zhang   Mat_MPISELL    *msell=(Mat_MPISELL*)Y->data;
966d4002b98SHong Zhang   Mat_SeqSELL    *sell=(Mat_SeqSELL*)msell->A->data;
967d4002b98SHong Zhang 
968d4002b98SHong Zhang   PetscFunctionBegin;
969d4002b98SHong Zhang   if (!Y->preallocated) {
970d4002b98SHong Zhang     ierr = MatMPISELLSetPreallocation(Y,1,NULL,0,NULL);CHKERRQ(ierr);
971d4002b98SHong Zhang   } else if (!sell->nz) {
972d4002b98SHong Zhang     PetscInt nonew = sell->nonew;
973d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(msell->A,1,NULL);CHKERRQ(ierr);
974d4002b98SHong Zhang     sell->nonew = nonew;
975d4002b98SHong Zhang   }
976d4002b98SHong Zhang   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
977d4002b98SHong Zhang   PetscFunctionReturn(0);
978d4002b98SHong Zhang }
979d4002b98SHong Zhang 
980d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_MPISELL(Mat A,PetscBool  *missing,PetscInt *d)
981d4002b98SHong Zhang {
982d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
983d4002b98SHong Zhang   PetscErrorCode ierr;
984d4002b98SHong Zhang 
985d4002b98SHong Zhang   PetscFunctionBegin;
986*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
987d4002b98SHong Zhang   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
988d4002b98SHong Zhang   if (d) {
989d4002b98SHong Zhang     PetscInt rstart;
990d4002b98SHong Zhang     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
991d4002b98SHong Zhang     *d += rstart;
992d4002b98SHong Zhang 
993d4002b98SHong Zhang   }
994d4002b98SHong Zhang   PetscFunctionReturn(0);
995d4002b98SHong Zhang }
996d4002b98SHong Zhang 
997d4002b98SHong Zhang PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A,Mat *a)
998d4002b98SHong Zhang {
999d4002b98SHong Zhang   PetscFunctionBegin;
1000d4002b98SHong Zhang   *a = ((Mat_MPISELL*)A->data)->A;
1001d4002b98SHong Zhang   PetscFunctionReturn(0);
1002d4002b98SHong Zhang }
1003d4002b98SHong Zhang 
1004d4002b98SHong Zhang /* -------------------------------------------------------------------*/
1005d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL,
1006f4259b30SLisandro Dalcin                                        NULL,
1007f4259b30SLisandro Dalcin                                        NULL,
1008d4002b98SHong Zhang                                        MatMult_MPISELL,
1009d4002b98SHong Zhang                                 /* 4*/ MatMultAdd_MPISELL,
1010d4002b98SHong Zhang                                        MatMultTranspose_MPISELL,
1011d4002b98SHong Zhang                                        MatMultTransposeAdd_MPISELL,
1012f4259b30SLisandro Dalcin                                        NULL,
1013f4259b30SLisandro Dalcin                                        NULL,
1014f4259b30SLisandro Dalcin                                        NULL,
1015f4259b30SLisandro Dalcin                                 /*10*/ NULL,
1016f4259b30SLisandro Dalcin                                        NULL,
1017f4259b30SLisandro Dalcin                                        NULL,
1018d4002b98SHong Zhang                                        MatSOR_MPISELL,
1019f4259b30SLisandro Dalcin                                        NULL,
1020d4002b98SHong Zhang                                 /*15*/ MatGetInfo_MPISELL,
1021d4002b98SHong Zhang                                        MatEqual_MPISELL,
1022d4002b98SHong Zhang                                        MatGetDiagonal_MPISELL,
1023d4002b98SHong Zhang                                        MatDiagonalScale_MPISELL,
1024f4259b30SLisandro Dalcin                                        NULL,
1025d4002b98SHong Zhang                                 /*20*/ MatAssemblyBegin_MPISELL,
1026d4002b98SHong Zhang                                        MatAssemblyEnd_MPISELL,
1027d4002b98SHong Zhang                                        MatSetOption_MPISELL,
1028d4002b98SHong Zhang                                        MatZeroEntries_MPISELL,
1029f4259b30SLisandro Dalcin                                 /*24*/ NULL,
1030f4259b30SLisandro Dalcin                                        NULL,
1031f4259b30SLisandro Dalcin                                        NULL,
1032f4259b30SLisandro Dalcin                                        NULL,
1033f4259b30SLisandro Dalcin                                        NULL,
1034d4002b98SHong Zhang                                 /*29*/ MatSetUp_MPISELL,
1035f4259b30SLisandro Dalcin                                        NULL,
1036f4259b30SLisandro Dalcin                                        NULL,
1037d4002b98SHong Zhang                                        MatGetDiagonalBlock_MPISELL,
1038f4259b30SLisandro Dalcin                                        NULL,
1039d4002b98SHong Zhang                                 /*34*/ MatDuplicate_MPISELL,
1040f4259b30SLisandro Dalcin                                        NULL,
1041f4259b30SLisandro Dalcin                                        NULL,
1042f4259b30SLisandro Dalcin                                        NULL,
1043f4259b30SLisandro Dalcin                                        NULL,
1044f4259b30SLisandro Dalcin                                 /*39*/ NULL,
1045f4259b30SLisandro Dalcin                                        NULL,
1046f4259b30SLisandro Dalcin                                        NULL,
1047d4002b98SHong Zhang                                        MatGetValues_MPISELL,
1048d4002b98SHong Zhang                                        MatCopy_MPISELL,
1049f4259b30SLisandro Dalcin                                 /*44*/ NULL,
1050d4002b98SHong Zhang                                        MatScale_MPISELL,
1051d4002b98SHong Zhang                                        MatShift_MPISELL,
1052d4002b98SHong Zhang                                        MatDiagonalSet_MPISELL,
1053f4259b30SLisandro Dalcin                                        NULL,
1054d4002b98SHong Zhang                                 /*49*/ MatSetRandom_MPISELL,
1055f4259b30SLisandro Dalcin                                        NULL,
1056f4259b30SLisandro Dalcin                                        NULL,
1057f4259b30SLisandro Dalcin                                        NULL,
1058f4259b30SLisandro Dalcin                                        NULL,
1059d4002b98SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
1060f4259b30SLisandro Dalcin                                        NULL,
1061d4002b98SHong Zhang                                        MatSetUnfactored_MPISELL,
1062f4259b30SLisandro Dalcin                                        NULL,
1063f4259b30SLisandro Dalcin                                        NULL,
1064f4259b30SLisandro Dalcin                                 /*59*/ NULL,
1065d4002b98SHong Zhang                                        MatDestroy_MPISELL,
1066d4002b98SHong Zhang                                        MatView_MPISELL,
1067f4259b30SLisandro Dalcin                                        NULL,
1068f4259b30SLisandro Dalcin                                        NULL,
1069f4259b30SLisandro Dalcin                                 /*64*/ NULL,
1070f4259b30SLisandro Dalcin                                        NULL,
1071f4259b30SLisandro Dalcin                                        NULL,
1072f4259b30SLisandro Dalcin                                        NULL,
1073f4259b30SLisandro Dalcin                                        NULL,
1074f4259b30SLisandro Dalcin                                 /*69*/ NULL,
1075f4259b30SLisandro Dalcin                                        NULL,
1076f4259b30SLisandro Dalcin                                        NULL,
1077f4259b30SLisandro Dalcin                                        NULL,
1078f4259b30SLisandro Dalcin                                        NULL,
1079f4259b30SLisandro Dalcin                                        NULL,
1080d4002b98SHong Zhang                                 /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */
1081d4002b98SHong Zhang                                        MatSetFromOptions_MPISELL,
1082f4259b30SLisandro Dalcin                                        NULL,
1083f4259b30SLisandro Dalcin                                        NULL,
1084f4259b30SLisandro Dalcin                                        NULL,
1085f4259b30SLisandro Dalcin                                 /*80*/ NULL,
1086f4259b30SLisandro Dalcin                                        NULL,
1087f4259b30SLisandro Dalcin                                        NULL,
1088f4259b30SLisandro Dalcin                                 /*83*/ NULL,
1089f4259b30SLisandro Dalcin                                        NULL,
1090f4259b30SLisandro Dalcin                                        NULL,
1091f4259b30SLisandro Dalcin                                        NULL,
1092f4259b30SLisandro Dalcin                                        NULL,
1093f4259b30SLisandro Dalcin                                        NULL,
1094f4259b30SLisandro Dalcin                                 /*89*/ NULL,
1095f4259b30SLisandro Dalcin                                        NULL,
1096f4259b30SLisandro Dalcin                                        NULL,
1097f4259b30SLisandro Dalcin                                        NULL,
1098f4259b30SLisandro Dalcin                                        NULL,
1099f4259b30SLisandro Dalcin                                 /*94*/ NULL,
1100f4259b30SLisandro Dalcin                                        NULL,
1101f4259b30SLisandro Dalcin                                        NULL,
1102f4259b30SLisandro Dalcin                                        NULL,
1103f4259b30SLisandro Dalcin                                        NULL,
1104f4259b30SLisandro Dalcin                                 /*99*/ NULL,
1105f4259b30SLisandro Dalcin                                        NULL,
1106f4259b30SLisandro Dalcin                                        NULL,
1107d4002b98SHong Zhang                                        MatConjugate_MPISELL,
1108f4259b30SLisandro Dalcin                                        NULL,
1109f4259b30SLisandro Dalcin                                 /*104*/NULL,
1110d4002b98SHong Zhang                                        MatRealPart_MPISELL,
1111d4002b98SHong Zhang                                        MatImaginaryPart_MPISELL,
1112f4259b30SLisandro Dalcin                                        NULL,
1113f4259b30SLisandro Dalcin                                        NULL,
1114f4259b30SLisandro Dalcin                                 /*109*/NULL,
1115f4259b30SLisandro Dalcin                                        NULL,
1116f4259b30SLisandro Dalcin                                        NULL,
1117f4259b30SLisandro Dalcin                                        NULL,
1118d4002b98SHong Zhang                                        MatMissingDiagonal_MPISELL,
1119f4259b30SLisandro Dalcin                                 /*114*/NULL,
1120f4259b30SLisandro Dalcin                                        NULL,
1121d4002b98SHong Zhang                                        MatGetGhosts_MPISELL,
1122f4259b30SLisandro Dalcin                                        NULL,
1123f4259b30SLisandro Dalcin                                        NULL,
1124f4259b30SLisandro Dalcin                                 /*119*/NULL,
1125f4259b30SLisandro Dalcin                                        NULL,
1126f4259b30SLisandro Dalcin                                        NULL,
1127f4259b30SLisandro Dalcin                                        NULL,
1128f4259b30SLisandro Dalcin                                        NULL,
1129f4259b30SLisandro Dalcin                                 /*124*/NULL,
1130f4259b30SLisandro Dalcin                                        NULL,
1131d4002b98SHong Zhang                                        MatInvertBlockDiagonal_MPISELL,
1132f4259b30SLisandro Dalcin                                        NULL,
1133f4259b30SLisandro Dalcin                                        NULL,
1134f4259b30SLisandro Dalcin                                 /*129*/NULL,
1135f4259b30SLisandro Dalcin                                        NULL,
1136f4259b30SLisandro Dalcin                                        NULL,
1137f4259b30SLisandro Dalcin                                        NULL,
1138f4259b30SLisandro Dalcin                                        NULL,
1139f4259b30SLisandro Dalcin                                 /*134*/NULL,
1140f4259b30SLisandro Dalcin                                        NULL,
1141f4259b30SLisandro Dalcin                                        NULL,
1142f4259b30SLisandro Dalcin                                        NULL,
1143f4259b30SLisandro Dalcin                                        NULL,
1144f4259b30SLisandro Dalcin                                 /*139*/NULL,
1145f4259b30SLisandro Dalcin                                        NULL,
1146f4259b30SLisandro Dalcin                                        NULL,
1147d4002b98SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
1148f4259b30SLisandro Dalcin                                        NULL,
1149f4259b30SLisandro Dalcin                                 /*144*/NULL
1150d4002b98SHong Zhang };
1151d4002b98SHong Zhang 
1152d4002b98SHong Zhang /* ----------------------------------------------------------------------------------------*/
1153d4002b98SHong Zhang 
1154d4002b98SHong Zhang PetscErrorCode MatStoreValues_MPISELL(Mat mat)
1155d4002b98SHong Zhang {
1156d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
1157d4002b98SHong Zhang   PetscErrorCode ierr;
1158d4002b98SHong Zhang 
1159d4002b98SHong Zhang   PetscFunctionBegin;
1160d4002b98SHong Zhang   ierr = MatStoreValues(sell->A);CHKERRQ(ierr);
1161d4002b98SHong Zhang   ierr = MatStoreValues(sell->B);CHKERRQ(ierr);
1162d4002b98SHong Zhang   PetscFunctionReturn(0);
1163d4002b98SHong Zhang }
1164d4002b98SHong Zhang 
1165d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_MPISELL(Mat mat)
1166d4002b98SHong Zhang {
1167d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
1168d4002b98SHong Zhang   PetscErrorCode ierr;
1169d4002b98SHong Zhang 
1170d4002b98SHong Zhang   PetscFunctionBegin;
1171d4002b98SHong Zhang   ierr = MatRetrieveValues(sell->A);CHKERRQ(ierr);
1172d4002b98SHong Zhang   ierr = MatRetrieveValues(sell->B);CHKERRQ(ierr);
1173d4002b98SHong Zhang   PetscFunctionReturn(0);
1174d4002b98SHong Zhang }
1175d4002b98SHong Zhang 
1176d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[])
1177d4002b98SHong Zhang {
1178d4002b98SHong Zhang   Mat_MPISELL    *b;
1179d4002b98SHong Zhang   PetscErrorCode ierr;
1180d4002b98SHong Zhang 
1181d4002b98SHong Zhang   PetscFunctionBegin;
1182d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
1183d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
1184d4002b98SHong Zhang   b = (Mat_MPISELL*)B->data;
1185d4002b98SHong Zhang 
1186d4002b98SHong Zhang   if (!B->preallocated) {
1187d4002b98SHong Zhang     /* Explicitly create 2 MATSEQSELL matrices. */
1188d4002b98SHong Zhang     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
1189d4002b98SHong Zhang     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
1190d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(b->A,B,B);CHKERRQ(ierr);
1191d4002b98SHong Zhang     ierr = MatSetType(b->A,MATSEQSELL);CHKERRQ(ierr);
1192d4002b98SHong Zhang     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
1193d4002b98SHong Zhang     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
1194d4002b98SHong Zhang     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
1195d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(b->B,B,B);CHKERRQ(ierr);
1196d4002b98SHong Zhang     ierr = MatSetType(b->B,MATSEQSELL);CHKERRQ(ierr);
1197d4002b98SHong Zhang     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
1198d4002b98SHong Zhang   }
1199d4002b98SHong Zhang 
1200d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(b->A,d_rlenmax,d_rlen);CHKERRQ(ierr);
1201d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(b->B,o_rlenmax,o_rlen);CHKERRQ(ierr);
1202d4002b98SHong Zhang   B->preallocated  = PETSC_TRUE;
1203d4002b98SHong Zhang   B->was_assembled = PETSC_FALSE;
1204d4002b98SHong Zhang   /*
1205d4002b98SHong Zhang     critical for MatAssemblyEnd to work.
1206d4002b98SHong Zhang     MatAssemblyBegin checks it to set up was_assembled
1207d4002b98SHong Zhang     and MatAssemblyEnd checks was_assembled to determine whether to build garray
1208d4002b98SHong Zhang   */
1209d4002b98SHong Zhang   B->assembled     = PETSC_FALSE;
1210d4002b98SHong Zhang   PetscFunctionReturn(0);
1211d4002b98SHong Zhang }
1212d4002b98SHong Zhang 
1213d4002b98SHong Zhang PetscErrorCode MatDuplicate_MPISELL(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1214d4002b98SHong Zhang {
1215d4002b98SHong Zhang   Mat            mat;
1216d4002b98SHong Zhang   Mat_MPISELL    *a,*oldmat=(Mat_MPISELL*)matin->data;
1217d4002b98SHong Zhang   PetscErrorCode ierr;
1218d4002b98SHong Zhang 
1219d4002b98SHong Zhang   PetscFunctionBegin;
1220f4259b30SLisandro Dalcin   *newmat = NULL;
1221d4002b98SHong Zhang   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
1222d4002b98SHong Zhang   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
1223d4002b98SHong Zhang   ierr    = MatSetBlockSizesFromMats(mat,matin,matin);CHKERRQ(ierr);
1224d4002b98SHong Zhang   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
1225d4002b98SHong Zhang   a       = (Mat_MPISELL*)mat->data;
1226d4002b98SHong Zhang 
1227d4002b98SHong Zhang   mat->factortype   = matin->factortype;
1228d4002b98SHong Zhang   mat->assembled    = PETSC_TRUE;
1229d4002b98SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
1230d4002b98SHong Zhang   mat->preallocated = PETSC_TRUE;
1231d4002b98SHong Zhang 
1232d4002b98SHong Zhang   a->size         = oldmat->size;
1233d4002b98SHong Zhang   a->rank         = oldmat->rank;
1234d4002b98SHong Zhang   a->donotstash   = oldmat->donotstash;
1235d4002b98SHong Zhang   a->roworiented  = oldmat->roworiented;
1236f4259b30SLisandro Dalcin   a->rowindices   = NULL;
1237f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
1238d4002b98SHong Zhang   a->getrowactive = PETSC_FALSE;
1239d4002b98SHong Zhang 
1240d4002b98SHong Zhang   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
1241d4002b98SHong Zhang   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
1242d4002b98SHong Zhang 
1243d4002b98SHong Zhang   if (oldmat->colmap) {
1244d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
1245d4002b98SHong Zhang     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1246d4002b98SHong Zhang #else
1247d4002b98SHong Zhang     ierr = PetscMalloc1(mat->cmap->N,&a->colmap);CHKERRQ(ierr);
1248d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N)*sizeof(PetscInt));CHKERRQ(ierr);
1249580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,mat->cmap->N);CHKERRQ(ierr);
1250d4002b98SHong Zhang #endif
1251f4259b30SLisandro Dalcin   } else a->colmap = NULL;
1252d4002b98SHong Zhang   if (oldmat->garray) {
1253d4002b98SHong Zhang     PetscInt len;
1254d4002b98SHong Zhang     len  = oldmat->B->cmap->n;
1255d4002b98SHong Zhang     ierr = PetscMalloc1(len+1,&a->garray);CHKERRQ(ierr);
1256d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
1257580bdb30SBarry Smith     if (len) { ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); }
1258f4259b30SLisandro Dalcin   } else a->garray = NULL;
1259d4002b98SHong Zhang 
1260d4002b98SHong Zhang   ierr    = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
1261d4002b98SHong Zhang   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
1262d4002b98SHong Zhang   ierr    = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
1263d4002b98SHong Zhang   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
1264d4002b98SHong Zhang   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
1265d4002b98SHong Zhang   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1266d4002b98SHong Zhang   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
1267d4002b98SHong Zhang   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
1268d4002b98SHong Zhang   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
1269d4002b98SHong Zhang   *newmat = mat;
1270d4002b98SHong Zhang   PetscFunctionReturn(0);
1271d4002b98SHong Zhang }
1272d4002b98SHong Zhang 
1273d4002b98SHong Zhang /*@C
1274d4002b98SHong Zhang    MatMPISELLSetPreallocation - Preallocates memory for a sparse parallel matrix in sell format.
1275d4002b98SHong Zhang    For good matrix assembly performance the user should preallocate the matrix storage by
1276d4002b98SHong Zhang    setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz).
1277d4002b98SHong Zhang 
1278d083f849SBarry Smith    Collective
1279d4002b98SHong Zhang 
1280d4002b98SHong Zhang    Input Parameters:
1281d4002b98SHong Zhang +  B - the matrix
1282d4002b98SHong Zhang .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
1283d4002b98SHong Zhang            (same value is used for all local rows)
1284d4002b98SHong Zhang .  d_nnz - array containing the number of nonzeros in the various rows of the
1285d4002b98SHong Zhang            DIAGONAL portion of the local submatrix (possibly different for each row)
1286d4002b98SHong Zhang            or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure.
1287d4002b98SHong Zhang            The size of this array is equal to the number of local rows, i.e 'm'.
1288d4002b98SHong Zhang            For matrices that will be factored, you must leave room for (and set)
1289d4002b98SHong Zhang            the diagonal entry even if it is zero.
1290d4002b98SHong Zhang .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
1291d4002b98SHong Zhang            submatrix (same value is used for all local rows).
1292d4002b98SHong Zhang -  o_nnz - array containing the number of nonzeros in the various rows of the
1293d4002b98SHong Zhang            OFF-DIAGONAL portion of the local submatrix (possibly different for
1294d4002b98SHong Zhang            each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero
1295d4002b98SHong Zhang            structure. The size of this array is equal to the number
1296d4002b98SHong Zhang            of local rows, i.e 'm'.
1297d4002b98SHong Zhang 
1298d4002b98SHong Zhang    If the *_nnz parameter is given then the *_nz parameter is ignored
1299d4002b98SHong Zhang 
1300d4002b98SHong Zhang    The stored row and column indices begin with zero.
1301d4002b98SHong Zhang 
1302d4002b98SHong Zhang    The parallel matrix is partitioned such that the first m0 rows belong to
1303d4002b98SHong Zhang    process 0, the next m1 rows belong to process 1, the next m2 rows belong
1304d4002b98SHong Zhang    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
1305d4002b98SHong Zhang 
1306d4002b98SHong Zhang    The DIAGONAL portion of the local submatrix of a processor can be defined
1307d4002b98SHong Zhang    as the submatrix which is obtained by extraction the part corresponding to
1308d4002b98SHong Zhang    the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
1309d4002b98SHong Zhang    first row that belongs to the processor, r2 is the last row belonging to
1310d4002b98SHong Zhang    the this processor, and c1-c2 is range of indices of the local part of a
1311d4002b98SHong Zhang    vector suitable for applying the matrix to.  This is an mxn matrix.  In the
1312d4002b98SHong Zhang    common case of a square matrix, the row and column ranges are the same and
1313d4002b98SHong Zhang    the DIAGONAL part is also square. The remaining portion of the local
1314d4002b98SHong Zhang    submatrix (mxN) constitute the OFF-DIAGONAL portion.
1315d4002b98SHong Zhang 
1316d4002b98SHong Zhang    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
1317d4002b98SHong Zhang 
1318d4002b98SHong Zhang    You can call MatGetInfo() to get information on how effective the preallocation was;
1319d4002b98SHong Zhang    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1320d4002b98SHong Zhang    You can also run with the option -info and look for messages with the string
1321d4002b98SHong Zhang    malloc in them to see if additional memory allocation was needed.
1322d4002b98SHong Zhang 
1323d4002b98SHong Zhang    Example usage:
1324d4002b98SHong Zhang 
1325d4002b98SHong Zhang    Consider the following 8x8 matrix with 34 non-zero values, that is
1326d4002b98SHong Zhang    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
1327d4002b98SHong Zhang    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
1328d4002b98SHong Zhang    as follows:
1329d4002b98SHong Zhang 
1330d4002b98SHong Zhang .vb
1331d4002b98SHong Zhang             1  2  0  |  0  3  0  |  0  4
1332d4002b98SHong Zhang     Proc0   0  5  6  |  7  0  0  |  8  0
1333d4002b98SHong Zhang             9  0 10  | 11  0  0  | 12  0
1334d4002b98SHong Zhang     -------------------------------------
1335d4002b98SHong Zhang            13  0 14  | 15 16 17  |  0  0
1336d4002b98SHong Zhang     Proc1   0 18  0  | 19 20 21  |  0  0
1337d4002b98SHong Zhang             0  0  0  | 22 23  0  | 24  0
1338d4002b98SHong Zhang     -------------------------------------
1339d4002b98SHong Zhang     Proc2  25 26 27  |  0  0 28  | 29  0
1340d4002b98SHong Zhang            30  0  0  | 31 32 33  |  0 34
1341d4002b98SHong Zhang .ve
1342d4002b98SHong Zhang 
1343d4002b98SHong Zhang    This can be represented as a collection of submatrices as:
1344d4002b98SHong Zhang 
1345d4002b98SHong Zhang .vb
1346d4002b98SHong Zhang       A B C
1347d4002b98SHong Zhang       D E F
1348d4002b98SHong Zhang       G H I
1349d4002b98SHong Zhang .ve
1350d4002b98SHong Zhang 
1351d4002b98SHong Zhang    Where the submatrices A,B,C are owned by proc0, D,E,F are
1352d4002b98SHong Zhang    owned by proc1, G,H,I are owned by proc2.
1353d4002b98SHong Zhang 
1354d4002b98SHong Zhang    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1355d4002b98SHong Zhang    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1356d4002b98SHong Zhang    The 'M','N' parameters are 8,8, and have the same values on all procs.
1357d4002b98SHong Zhang 
1358d4002b98SHong Zhang    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
1359d4002b98SHong Zhang    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
1360d4002b98SHong Zhang    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
1361d4002b98SHong Zhang    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
1362d4002b98SHong Zhang    part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL
1363d4002b98SHong Zhang    matrix, ans [DF] as another SeqSELL matrix.
1364d4002b98SHong Zhang 
1365d4002b98SHong Zhang    When d_nz, o_nz parameters are specified, d_nz storage elements are
1366d4002b98SHong Zhang    allocated for every row of the local diagonal submatrix, and o_nz
1367d4002b98SHong Zhang    storage locations are allocated for every row of the OFF-DIAGONAL submat.
1368d4002b98SHong Zhang    One way to choose d_nz and o_nz is to use the max nonzerors per local
1369d4002b98SHong Zhang    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
1370d4002b98SHong Zhang    In this case, the values of d_nz,o_nz are:
1371d4002b98SHong Zhang .vb
1372d4002b98SHong Zhang      proc0 : dnz = 2, o_nz = 2
1373d4002b98SHong Zhang      proc1 : dnz = 3, o_nz = 2
1374d4002b98SHong Zhang      proc2 : dnz = 1, o_nz = 4
1375d4002b98SHong Zhang .ve
1376d4002b98SHong Zhang    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
1377d4002b98SHong Zhang    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
1378d4002b98SHong Zhang    for proc3. i.e we are using 12+15+10=37 storage locations to store
1379d4002b98SHong Zhang    34 values.
1380d4002b98SHong Zhang 
1381d4002b98SHong Zhang    When d_nnz, o_nnz parameters are specified, the storage is specified
1382a5b23f4aSJose E. Roman    for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
1383d4002b98SHong Zhang    In the above case the values for d_nnz,o_nnz are:
1384d4002b98SHong Zhang .vb
1385d4002b98SHong Zhang      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
1386d4002b98SHong Zhang      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
1387d4002b98SHong Zhang      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
1388d4002b98SHong Zhang .ve
1389d4002b98SHong Zhang    Here the space allocated is according to nz (or maximum values in the nnz
1390d4002b98SHong Zhang    if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37
1391d4002b98SHong Zhang 
1392d4002b98SHong Zhang    Level: intermediate
1393d4002b98SHong Zhang 
1394d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSeqSELL(), MatSetValues(), MatCreatesell(),
1395d4002b98SHong Zhang           MATMPISELL, MatGetInfo(), PetscSplitOwnership()
1396d4002b98SHong Zhang @*/
1397d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1398d4002b98SHong Zhang {
1399d4002b98SHong Zhang   PetscErrorCode ierr;
1400d4002b98SHong Zhang 
1401d4002b98SHong Zhang   PetscFunctionBegin;
1402d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
1403d4002b98SHong Zhang   PetscValidType(B,1);
1404d4002b98SHong Zhang   ierr = PetscTryMethod(B,"MatMPISELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
1405d4002b98SHong Zhang   PetscFunctionReturn(0);
1406d4002b98SHong Zhang }
1407d4002b98SHong Zhang 
1408ed73aabaSBarry Smith /*MC
1409ed73aabaSBarry Smith    MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices,
1410ed73aabaSBarry Smith    based on the sliced Ellpack format
1411ed73aabaSBarry Smith 
1412ed73aabaSBarry Smith    Options Database Keys:
1413ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "seqsell" during a call to MatSetFromOptions()
1414ed73aabaSBarry Smith 
1415ed73aabaSBarry Smith    Level: beginner
1416ed73aabaSBarry Smith 
1417ed73aabaSBarry Smith .seealso: MatCreateSell(), MATSEQSELL, MATSELL, MATSEQAIJ, MATAIJ, MATMPIAIJ
1418ed73aabaSBarry Smith M*/
1419ed73aabaSBarry Smith 
1420d4002b98SHong Zhang /*@C
1421d4002b98SHong Zhang    MatCreateSELL - Creates a sparse parallel matrix in SELL format.
1422d4002b98SHong Zhang 
1423d083f849SBarry Smith    Collective
1424d4002b98SHong Zhang 
1425d4002b98SHong Zhang    Input Parameters:
1426d4002b98SHong Zhang +  comm - MPI communicator
1427d4002b98SHong Zhang .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1428d4002b98SHong Zhang            This value should be the same as the local size used in creating the
1429d4002b98SHong Zhang            y vector for the matrix-vector product y = Ax.
1430d4002b98SHong Zhang .  n - This value should be the same as the local size used in creating the
1431d4002b98SHong Zhang        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
1432d4002b98SHong Zhang        calculated if N is given) For square matrices n is almost always m.
1433d4002b98SHong Zhang .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1434d4002b98SHong Zhang .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1435d4002b98SHong Zhang .  d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix
1436d4002b98SHong Zhang                (same value is used for all local rows)
1437d4002b98SHong Zhang .  d_rlen - array containing the number of nonzeros in the various rows of the
1438d4002b98SHong Zhang             DIAGONAL portion of the local submatrix (possibly different for each row)
1439d4002b98SHong Zhang             or NULL, if d_rlenmax is used to specify the nonzero structure.
1440d4002b98SHong Zhang             The size of this array is equal to the number of local rows, i.e 'm'.
1441d4002b98SHong Zhang .  o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local
1442d4002b98SHong Zhang                submatrix (same value is used for all local rows).
1443d4002b98SHong Zhang -  o_rlen - array containing the number of nonzeros in the various rows of the
1444d4002b98SHong Zhang             OFF-DIAGONAL portion of the local submatrix (possibly different for
1445d4002b98SHong Zhang             each row) or NULL, if o_rlenmax is used to specify the nonzero
1446d4002b98SHong Zhang             structure. The size of this array is equal to the number
1447d4002b98SHong Zhang             of local rows, i.e 'm'.
1448d4002b98SHong Zhang 
1449d4002b98SHong Zhang    Output Parameter:
1450d4002b98SHong Zhang .  A - the matrix
1451d4002b98SHong Zhang 
1452d4002b98SHong Zhang    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1453f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
1454d4002b98SHong Zhang    [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
1455d4002b98SHong Zhang 
1456d4002b98SHong Zhang    Notes:
1457d4002b98SHong Zhang    If the *_rlen parameter is given then the *_rlenmax parameter is ignored
1458d4002b98SHong Zhang 
1459d4002b98SHong Zhang    m,n,M,N parameters specify the size of the matrix, and its partitioning across
1460d4002b98SHong Zhang    processors, while d_rlenmax,d_rlen,o_rlenmax,o_rlen parameters specify the approximate
1461d4002b98SHong Zhang    storage requirements for this matrix.
1462d4002b98SHong Zhang 
1463d4002b98SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one
1464d4002b98SHong Zhang    processor than it must be used on all processors that share the object for
1465d4002b98SHong Zhang    that argument.
1466d4002b98SHong Zhang 
1467d4002b98SHong Zhang    The user MUST specify either the local or global matrix dimensions
1468d4002b98SHong Zhang    (possibly both).
1469d4002b98SHong Zhang 
1470d4002b98SHong Zhang    The parallel matrix is partitioned across processors such that the
1471d4002b98SHong Zhang    first m0 rows belong to process 0, the next m1 rows belong to
1472d4002b98SHong Zhang    process 1, the next m2 rows belong to process 2 etc.. where
1473d4002b98SHong Zhang    m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
1474d4002b98SHong Zhang    values corresponding to [m x N] submatrix.
1475d4002b98SHong Zhang 
1476d4002b98SHong Zhang    The columns are logically partitioned with the n0 columns belonging
1477d4002b98SHong Zhang    to 0th partition, the next n1 columns belonging to the next
1478d4002b98SHong Zhang    partition etc.. where n0,n1,n2... are the input parameter 'n'.
1479d4002b98SHong Zhang 
1480d4002b98SHong Zhang    The DIAGONAL portion of the local submatrix on any given processor
1481d4002b98SHong Zhang    is the submatrix corresponding to the rows and columns m,n
1482d4002b98SHong Zhang    corresponding to the given processor. i.e diagonal matrix on
1483d4002b98SHong Zhang    process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
1484d4002b98SHong Zhang    etc. The remaining portion of the local submatrix [m x (N-n)]
1485d4002b98SHong Zhang    constitute the OFF-DIAGONAL portion. The example below better
1486d4002b98SHong Zhang    illustrates this concept.
1487d4002b98SHong Zhang 
1488d4002b98SHong Zhang    For a square global matrix we define each processor's diagonal portion
1489d4002b98SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1490d4002b98SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1491d4002b98SHong Zhang    local matrix (a rectangular submatrix).
1492d4002b98SHong Zhang 
1493d4002b98SHong Zhang    If o_rlen, d_rlen are specified, then o_rlenmax, and d_rlenmax are ignored.
1494d4002b98SHong Zhang 
1495d4002b98SHong Zhang    When calling this routine with a single process communicator, a matrix of
1496d4002b98SHong Zhang    type SEQSELL is returned.  If a matrix of type MATMPISELL is desired for this
1497d4002b98SHong Zhang    type of communicator, use the construction mechanism:
1498d4002b98SHong Zhang      MatCreate(...,&A); MatSetType(A,MATMPISELL); MatSetSizes(A, m,n,M,N); MatMPISELLSetPreallocation(A,...);
1499d4002b98SHong Zhang 
1500d4002b98SHong Zhang    Options Database Keys:
1501d4002b98SHong Zhang -  -mat_sell_oneindex - Internally use indexing starting at 1
1502d4002b98SHong Zhang         rather than 0.  Note that when calling MatSetValues(),
1503d4002b98SHong Zhang         the user still MUST index entries starting at 0!
1504d4002b98SHong Zhang 
1505d4002b98SHong Zhang    Example usage:
1506d4002b98SHong Zhang 
1507d4002b98SHong Zhang    Consider the following 8x8 matrix with 34 non-zero values, that is
1508d4002b98SHong Zhang    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
1509d4002b98SHong Zhang    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
1510d4002b98SHong Zhang    as follows:
1511d4002b98SHong Zhang 
1512d4002b98SHong Zhang .vb
1513d4002b98SHong Zhang             1  2  0  |  0  3  0  |  0  4
1514d4002b98SHong Zhang     Proc0   0  5  6  |  7  0  0  |  8  0
1515d4002b98SHong Zhang             9  0 10  | 11  0  0  | 12  0
1516d4002b98SHong Zhang     -------------------------------------
1517d4002b98SHong Zhang            13  0 14  | 15 16 17  |  0  0
1518d4002b98SHong Zhang     Proc1   0 18  0  | 19 20 21  |  0  0
1519d4002b98SHong Zhang             0  0  0  | 22 23  0  | 24  0
1520d4002b98SHong Zhang     -------------------------------------
1521d4002b98SHong Zhang     Proc2  25 26 27  |  0  0 28  | 29  0
1522d4002b98SHong Zhang            30  0  0  | 31 32 33  |  0 34
1523d4002b98SHong Zhang .ve
1524d4002b98SHong Zhang 
1525d4002b98SHong Zhang    This can be represented as a collection of submatrices as:
1526d4002b98SHong Zhang 
1527d4002b98SHong Zhang .vb
1528d4002b98SHong Zhang       A B C
1529d4002b98SHong Zhang       D E F
1530d4002b98SHong Zhang       G H I
1531d4002b98SHong Zhang .ve
1532d4002b98SHong Zhang 
1533d4002b98SHong Zhang    Where the submatrices A,B,C are owned by proc0, D,E,F are
1534d4002b98SHong Zhang    owned by proc1, G,H,I are owned by proc2.
1535d4002b98SHong Zhang 
1536d4002b98SHong Zhang    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1537d4002b98SHong Zhang    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1538d4002b98SHong Zhang    The 'M','N' parameters are 8,8, and have the same values on all procs.
1539d4002b98SHong Zhang 
1540d4002b98SHong Zhang    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
1541d4002b98SHong Zhang    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
1542d4002b98SHong Zhang    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
1543d4002b98SHong Zhang    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
1544d4002b98SHong Zhang    part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL
1545d4002b98SHong Zhang    matrix, ans [DF] as another SeqSELL matrix.
1546d4002b98SHong Zhang 
1547d4002b98SHong Zhang    When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are
1548d4002b98SHong Zhang    allocated for every row of the local diagonal submatrix, and o_rlenmax
1549d4002b98SHong Zhang    storage locations are allocated for every row of the OFF-DIAGONAL submat.
1550d4002b98SHong Zhang    One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local
1551d4002b98SHong Zhang    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
1552d4002b98SHong Zhang    In this case, the values of d_rlenmax,o_rlenmax are:
1553d4002b98SHong Zhang .vb
1554d4002b98SHong Zhang      proc0 : d_rlenmax = 2, o_rlenmax = 2
1555d4002b98SHong Zhang      proc1 : d_rlenmax = 3, o_rlenmax = 2
1556d4002b98SHong Zhang      proc2 : d_rlenmax = 1, o_rlenmax = 4
1557d4002b98SHong Zhang .ve
1558d4002b98SHong Zhang    We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This
1559d4002b98SHong Zhang    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
1560d4002b98SHong Zhang    for proc3. i.e we are using 12+15+10=37 storage locations to store
1561d4002b98SHong Zhang    34 values.
1562d4002b98SHong Zhang 
1563d4002b98SHong Zhang    When d_rlen, o_rlen parameters are specified, the storage is specified
1564a5b23f4aSJose E. Roman    for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
1565d4002b98SHong Zhang    In the above case the values for d_nnz,o_nnz are:
1566d4002b98SHong Zhang .vb
1567d4002b98SHong Zhang      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
1568d4002b98SHong Zhang      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
1569d4002b98SHong Zhang      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
1570d4002b98SHong Zhang .ve
1571d4002b98SHong Zhang    Here the space allocated is still 37 though there are 34 nonzeros because
1572d4002b98SHong Zhang    the allocation is always done according to rlenmax.
1573d4002b98SHong Zhang 
1574d4002b98SHong Zhang    Level: intermediate
1575d4002b98SHong Zhang 
1576d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSeqSELL(), MatSetValues(), MatMPISELLSetPreallocation(), MatMPISELLSetPreallocationSELL(),
1577d4002b98SHong Zhang           MATMPISELL, MatCreateMPISELLWithArrays()
1578d4002b98SHong Zhang @*/
1579d4002b98SHong Zhang PetscErrorCode MatCreateSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[],Mat *A)
1580d4002b98SHong Zhang {
1581d4002b98SHong Zhang   PetscErrorCode ierr;
1582d4002b98SHong Zhang   PetscMPIInt    size;
1583d4002b98SHong Zhang 
1584d4002b98SHong Zhang   PetscFunctionBegin;
1585d4002b98SHong Zhang   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1586d4002b98SHong Zhang   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1587ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
1588d4002b98SHong Zhang   if (size > 1) {
1589d4002b98SHong Zhang     ierr = MatSetType(*A,MATMPISELL);CHKERRQ(ierr);
1590d4002b98SHong Zhang     ierr = MatMPISELLSetPreallocation(*A,d_rlenmax,d_rlen,o_rlenmax,o_rlen);CHKERRQ(ierr);
1591d4002b98SHong Zhang   } else {
1592d4002b98SHong Zhang     ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr);
1593d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(*A,d_rlenmax,d_rlen);CHKERRQ(ierr);
1594d4002b98SHong Zhang   }
1595d4002b98SHong Zhang   PetscFunctionReturn(0);
1596d4002b98SHong Zhang }
1597d4002b98SHong Zhang 
1598d4002b98SHong Zhang PetscErrorCode MatMPISELLGetSeqSELL(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
1599d4002b98SHong Zhang {
1600d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
1601d4002b98SHong Zhang   PetscBool      flg;
1602d4002b98SHong Zhang   PetscErrorCode ierr;
1603d4002b98SHong Zhang 
1604d4002b98SHong Zhang   PetscFunctionBegin;
1605d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&flg);CHKERRQ(ierr);
1606*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPISELL matrix as input");
1607d4002b98SHong Zhang   if (Ad)     *Ad     = a->A;
1608d4002b98SHong Zhang   if (Ao)     *Ao     = a->B;
1609d4002b98SHong Zhang   if (colmap) *colmap = a->garray;
1610d4002b98SHong Zhang   PetscFunctionReturn(0);
1611d4002b98SHong Zhang }
1612d4002b98SHong Zhang 
1613d4002b98SHong Zhang /*@C
1614d4002b98SHong Zhang      MatMPISELLGetLocalMatCondensed - Creates a SeqSELL matrix from an MATMPISELL matrix by taking all its local rows and NON-ZERO columns
1615d4002b98SHong Zhang 
1616d4002b98SHong Zhang     Not Collective
1617d4002b98SHong Zhang 
1618d4002b98SHong Zhang    Input Parameters:
1619d4002b98SHong Zhang +    A - the matrix
1620d4002b98SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
1621d4002b98SHong Zhang -    row, col - index sets of rows and columns to extract (or NULL)
1622d4002b98SHong Zhang 
1623d4002b98SHong Zhang    Output Parameter:
1624d4002b98SHong Zhang .    A_loc - the local sequential matrix generated
1625d4002b98SHong Zhang 
1626d4002b98SHong Zhang     Level: developer
1627d4002b98SHong Zhang 
1628d4002b98SHong Zhang .seealso: MatGetOwnershipRange(), MatMPISELLGetLocalMat()
1629d4002b98SHong Zhang 
1630d4002b98SHong Zhang @*/
1631d4002b98SHong Zhang PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc)
1632d4002b98SHong Zhang {
1633d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
1634d4002b98SHong Zhang   PetscErrorCode ierr;
1635d4002b98SHong Zhang   PetscInt       i,start,end,ncols,nzA,nzB,*cmap,imark,*idx;
1636d4002b98SHong Zhang   IS             isrowa,iscola;
1637d4002b98SHong Zhang   Mat            *aloc;
1638d4002b98SHong Zhang   PetscBool      match;
1639d4002b98SHong Zhang 
1640d4002b98SHong Zhang   PetscFunctionBegin;
1641d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&match);CHKERRQ(ierr);
1642*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!match,PetscObjectComm((PetscObject)A), PETSC_ERR_SUP,"Requires MATMPISELL matrix as input");
1643d4002b98SHong Zhang   ierr = PetscLogEventBegin(MAT_Getlocalmatcondensed,A,0,0,0);CHKERRQ(ierr);
1644d4002b98SHong Zhang   if (!row) {
1645d4002b98SHong Zhang     start = A->rmap->rstart; end = A->rmap->rend;
1646d4002b98SHong Zhang     ierr  = ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa);CHKERRQ(ierr);
1647d4002b98SHong Zhang   } else {
1648d4002b98SHong Zhang     isrowa = *row;
1649d4002b98SHong Zhang   }
1650d4002b98SHong Zhang   if (!col) {
1651d4002b98SHong Zhang     start = A->cmap->rstart;
1652d4002b98SHong Zhang     cmap  = a->garray;
1653d4002b98SHong Zhang     nzA   = a->A->cmap->n;
1654d4002b98SHong Zhang     nzB   = a->B->cmap->n;
1655d4002b98SHong Zhang     ierr  = PetscMalloc1(nzA+nzB, &idx);CHKERRQ(ierr);
1656d4002b98SHong Zhang     ncols = 0;
1657d4002b98SHong Zhang     for (i=0; i<nzB; i++) {
1658d4002b98SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
1659d4002b98SHong Zhang       else break;
1660d4002b98SHong Zhang     }
1661d4002b98SHong Zhang     imark = i;
1662d4002b98SHong Zhang     for (i=0; i<nzA; i++) idx[ncols++] = start + i;
1663d4002b98SHong Zhang     for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i];
1664d4002b98SHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&iscola);CHKERRQ(ierr);
1665d4002b98SHong Zhang   } else {
1666d4002b98SHong Zhang     iscola = *col;
1667d4002b98SHong Zhang   }
1668d4002b98SHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
1669d4002b98SHong Zhang     ierr    = PetscMalloc1(1,&aloc);CHKERRQ(ierr);
1670d4002b98SHong Zhang     aloc[0] = *A_loc;
1671d4002b98SHong Zhang   }
1672d4002b98SHong Zhang   ierr   = MatCreateSubMatrices(A,1,&isrowa,&iscola,scall,&aloc);CHKERRQ(ierr);
1673d4002b98SHong Zhang   *A_loc = aloc[0];
1674d4002b98SHong Zhang   ierr   = PetscFree(aloc);CHKERRQ(ierr);
1675d4002b98SHong Zhang   if (!row) {
1676d4002b98SHong Zhang     ierr = ISDestroy(&isrowa);CHKERRQ(ierr);
1677d4002b98SHong Zhang   }
1678d4002b98SHong Zhang   if (!col) {
1679d4002b98SHong Zhang     ierr = ISDestroy(&iscola);CHKERRQ(ierr);
1680d4002b98SHong Zhang   }
1681d4002b98SHong Zhang   ierr = PetscLogEventEnd(MAT_Getlocalmatcondensed,A,0,0,0);CHKERRQ(ierr);
1682d4002b98SHong Zhang   PetscFunctionReturn(0);
1683d4002b98SHong Zhang }
1684d4002b98SHong Zhang 
1685d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
1686d4002b98SHong Zhang 
1687d4002b98SHong Zhang PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
1688d4002b98SHong Zhang {
1689d4002b98SHong Zhang   PetscErrorCode ierr;
1690d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
1691d4002b98SHong Zhang   Mat            B;
1692d4002b98SHong Zhang   Mat_MPIAIJ     *b;
1693d4002b98SHong Zhang 
1694d4002b98SHong Zhang   PetscFunctionBegin;
1695*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
1696d4002b98SHong Zhang 
169794a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
169894a8b381SRichard Tran Mills     B = *newmat;
169994a8b381SRichard Tran Mills   } else {
1700d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1701d4002b98SHong Zhang     ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
1702d4002b98SHong Zhang     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1703d4002b98SHong Zhang     ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
1704d4002b98SHong Zhang     ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
1705d4002b98SHong Zhang     ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
170694a8b381SRichard Tran Mills   }
1707d4002b98SHong Zhang   b    = (Mat_MPIAIJ*) B->data;
170894a8b381SRichard Tran Mills 
170994a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
171094a8b381SRichard Tran Mills     ierr = MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr);
171194a8b381SRichard Tran Mills     ierr = MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr);
171294a8b381SRichard Tran Mills   } else {
1713d4002b98SHong Zhang     ierr = MatDestroy(&b->A);CHKERRQ(ierr);
1714d4002b98SHong Zhang     ierr = MatDestroy(&b->B);CHKERRQ(ierr);
1715d4002b98SHong Zhang     ierr = MatDisAssemble_MPISELL(A);CHKERRQ(ierr);
1716d4002b98SHong Zhang     ierr = MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
1717d4002b98SHong Zhang     ierr = MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
1718d4002b98SHong Zhang     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1719d4002b98SHong Zhang     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1720d4002b98SHong Zhang     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1721d4002b98SHong Zhang     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
172294a8b381SRichard Tran Mills   }
1723d4002b98SHong Zhang 
1724d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
1725d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
1726d4002b98SHong Zhang   } else {
1727d4002b98SHong Zhang     *newmat = B;
1728d4002b98SHong Zhang   }
1729d4002b98SHong Zhang   PetscFunctionReturn(0);
1730d4002b98SHong Zhang }
1731d4002b98SHong Zhang 
1732d4002b98SHong Zhang PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
1733d4002b98SHong Zhang {
1734d4002b98SHong Zhang   PetscErrorCode ierr;
1735d4002b98SHong Zhang   Mat_MPIAIJ     *a=(Mat_MPIAIJ*)A->data;
1736d4002b98SHong Zhang   Mat            B;
1737d4002b98SHong Zhang   Mat_MPISELL    *b;
1738d4002b98SHong Zhang 
1739d4002b98SHong Zhang   PetscFunctionBegin;
1740*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
1741d4002b98SHong Zhang 
174294a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
174394a8b381SRichard Tran Mills     B = *newmat;
174494a8b381SRichard Tran Mills   } else {
1745d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1746d4002b98SHong Zhang     ierr = MatSetType(B,MATMPISELL);CHKERRQ(ierr);
1747d4002b98SHong Zhang     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1748d4002b98SHong Zhang     ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
1749d4002b98SHong Zhang     ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
1750d4002b98SHong Zhang     ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
175194a8b381SRichard Tran Mills   }
1752d4002b98SHong Zhang   b    = (Mat_MPISELL*) B->data;
175394a8b381SRichard Tran Mills 
175494a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
175594a8b381SRichard Tran Mills     ierr = MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr);
175694a8b381SRichard Tran Mills     ierr = MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr);
175794a8b381SRichard Tran Mills   } else {
1758d4002b98SHong Zhang     ierr = MatDestroy(&b->A);CHKERRQ(ierr);
1759d4002b98SHong Zhang     ierr = MatDestroy(&b->B);CHKERRQ(ierr);
1760d4002b98SHong Zhang     ierr = MatDisAssemble_MPIAIJ(A);CHKERRQ(ierr);
1761d4002b98SHong Zhang     ierr = MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
1762d4002b98SHong Zhang     ierr = MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
1763d4002b98SHong Zhang     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1764d4002b98SHong Zhang     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1765d4002b98SHong Zhang     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1766d4002b98SHong Zhang     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
176794a8b381SRichard Tran Mills   }
1768d4002b98SHong Zhang 
1769d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
1770d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
1771d4002b98SHong Zhang   } else {
1772d4002b98SHong Zhang     *newmat = B;
1773d4002b98SHong Zhang   }
1774d4002b98SHong Zhang   PetscFunctionReturn(0);
1775d4002b98SHong Zhang }
1776d4002b98SHong Zhang 
1777d4002b98SHong Zhang PetscErrorCode MatSOR_MPISELL(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1778d4002b98SHong Zhang {
1779d4002b98SHong Zhang   Mat_MPISELL    *mat=(Mat_MPISELL*)matin->data;
1780d4002b98SHong Zhang   PetscErrorCode ierr;
1781f4259b30SLisandro Dalcin   Vec            bb1=NULL;
1782d4002b98SHong Zhang 
1783d4002b98SHong Zhang   PetscFunctionBegin;
1784d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) {
1785d4002b98SHong Zhang     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
1786d4002b98SHong Zhang     PetscFunctionReturn(0);
1787d4002b98SHong Zhang   }
1788d4002b98SHong Zhang 
1789d4002b98SHong Zhang   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) {
1790d4002b98SHong Zhang     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
1791d4002b98SHong Zhang   }
1792d4002b98SHong Zhang 
1793d4002b98SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1794d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
1795d4002b98SHong Zhang       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
1796d4002b98SHong Zhang       its--;
1797d4002b98SHong Zhang     }
1798d4002b98SHong Zhang 
1799d4002b98SHong Zhang     while (its--) {
1800d4002b98SHong Zhang       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1801d4002b98SHong Zhang       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1802d4002b98SHong Zhang 
1803d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
1804d4002b98SHong Zhang       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
1805d4002b98SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
1806d4002b98SHong Zhang 
1807d4002b98SHong Zhang       /* local sweep */
1808d4002b98SHong Zhang       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
1809d4002b98SHong Zhang     }
1810d4002b98SHong Zhang   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1811d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
1812d4002b98SHong Zhang       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
1813d4002b98SHong Zhang       its--;
1814d4002b98SHong Zhang     }
1815d4002b98SHong Zhang     while (its--) {
1816d4002b98SHong Zhang       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1817d4002b98SHong Zhang       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1818d4002b98SHong Zhang 
1819d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
1820d4002b98SHong Zhang       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
1821d4002b98SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
1822d4002b98SHong Zhang 
1823d4002b98SHong Zhang       /* local sweep */
1824d4002b98SHong Zhang       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
1825d4002b98SHong Zhang     }
1826d4002b98SHong Zhang   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1827d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
1828d4002b98SHong Zhang       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
1829d4002b98SHong Zhang       its--;
1830d4002b98SHong Zhang     }
1831d4002b98SHong Zhang     while (its--) {
1832d4002b98SHong Zhang       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1833d4002b98SHong Zhang       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1834d4002b98SHong Zhang 
1835d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
1836d4002b98SHong Zhang       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
1837d4002b98SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
1838d4002b98SHong Zhang 
1839d4002b98SHong Zhang       /* local sweep */
1840d4002b98SHong Zhang       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
1841d4002b98SHong Zhang     }
1842d4002b98SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel SOR not supported");
1843d4002b98SHong Zhang 
1844d4002b98SHong Zhang   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
1845d4002b98SHong Zhang 
1846d4002b98SHong Zhang   matin->factorerrortype = mat->A->factorerrortype;
1847d4002b98SHong Zhang   PetscFunctionReturn(0);
1848d4002b98SHong Zhang }
1849d4002b98SHong Zhang 
1850d4002b98SHong Zhang /*MC
1851d4002b98SHong Zhang    MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices.
1852d4002b98SHong Zhang 
1853d4002b98SHong Zhang    Options Database Keys:
1854d4002b98SHong Zhang . -mat_type MPISELL - sets the matrix type to "MPISELL" during a call to MatSetFromOptions()
1855d4002b98SHong Zhang 
1856d4002b98SHong Zhang   Level: beginner
1857d4002b98SHong Zhang 
1858d4002b98SHong Zhang .seealso: MatCreateSELL()
1859d4002b98SHong Zhang M*/
1860d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B)
1861d4002b98SHong Zhang {
1862d4002b98SHong Zhang   Mat_MPISELL    *b;
1863d4002b98SHong Zhang   PetscErrorCode ierr;
1864d4002b98SHong Zhang   PetscMPIInt    size;
1865d4002b98SHong Zhang 
1866d4002b98SHong Zhang   PetscFunctionBegin;
1867ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr);
1868d4002b98SHong Zhang   ierr          = PetscNewLog(B,&b);CHKERRQ(ierr);
1869d4002b98SHong Zhang   B->data       = (void*)b;
1870d4002b98SHong Zhang   ierr          = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1871d4002b98SHong Zhang   B->assembled  = PETSC_FALSE;
1872d4002b98SHong Zhang   B->insertmode = NOT_SET_VALUES;
1873d4002b98SHong Zhang   b->size       = size;
1874ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRMPI(ierr);
1875d4002b98SHong Zhang   /* build cache for off array entries formed */
1876d4002b98SHong Zhang   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
1877d4002b98SHong Zhang 
1878d4002b98SHong Zhang   b->donotstash  = PETSC_FALSE;
1879f4259b30SLisandro Dalcin   b->colmap      = NULL;
1880f4259b30SLisandro Dalcin   b->garray      = NULL;
1881d4002b98SHong Zhang   b->roworiented = PETSC_TRUE;
1882d4002b98SHong Zhang 
1883d4002b98SHong Zhang   /* stuff used for matrix vector multiply */
1884d4002b98SHong Zhang   b->lvec  = NULL;
1885d4002b98SHong Zhang   b->Mvctx = NULL;
1886d4002b98SHong Zhang 
1887d4002b98SHong Zhang   /* stuff for MatGetRow() */
1888f4259b30SLisandro Dalcin   b->rowindices   = NULL;
1889f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
1890d4002b98SHong Zhang   b->getrowactive = PETSC_FALSE;
1891d4002b98SHong Zhang 
1892d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISELL);CHKERRQ(ierr);
1893d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISELL);CHKERRQ(ierr);
1894d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_MPISELL);CHKERRQ(ierr);
1895d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPISELLSetPreallocation_C",MatMPISELLSetPreallocation_MPISELL);CHKERRQ(ierr);
1896d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisell_mpiaij_C",MatConvert_MPISELL_MPIAIJ);CHKERRQ(ierr);
1897d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPISELL);CHKERRQ(ierr);
1898d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPISELL);CHKERRQ(ierr);
1899d4002b98SHong Zhang   PetscFunctionReturn(0);
1900d4002b98SHong Zhang }
1901