1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 1111a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 1211a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 1311a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 1820f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 2267be906fSBarry Smith .seealso: `Mat`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL` 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPISELL(Mat Y, Vec D, InsertMode is) 26d71ae5a4SJacob Faibussowitsch { 27d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A, D, is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 34d4002b98SHong Zhang } 353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43da81f932SPierre Jolivet has an order N integer array but is fast to access. 44d4002b98SHong Zhang */ 45d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d71ae5a4SJacob Faibussowitsch { 47d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 48d4002b98SHong Zhang PetscInt n = sell->B->cmap->n, i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 53eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &sell->colmap)); 54c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(sell->colmap, sell->garray[i] + 1, i + 1)); 55d4002b98SHong Zhang #else 569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &sell->colmap)); 57d4002b98SHong Zhang for (i = 0; i < n; i++) sell->colmap[sell->garray[i]] = i + 1; 58d4002b98SHong Zhang #endif 593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60d4002b98SHong Zhang } 61d4002b98SHong Zhang 62d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row, col, value, addv, orow, ocol) \ 63d4002b98SHong Zhang { \ 64d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 65d4002b98SHong Zhang else high1 = nrow1; \ 66d4002b98SHong Zhang lastcol1 = col; \ 67d4002b98SHong Zhang while (high1 - low1 > 5) { \ 68d4002b98SHong Zhang t = (low1 + high1) / 2; \ 694f8ff0b3SHong Zhang if (cp1[sliceheight * t] > col) high1 = t; \ 70d4002b98SHong Zhang else low1 = t; \ 71d4002b98SHong Zhang } \ 72d4002b98SHong Zhang for (_i = low1; _i < high1; _i++) { \ 734f8ff0b3SHong Zhang if (cp1[sliceheight * _i] > col) break; \ 744f8ff0b3SHong Zhang if (cp1[sliceheight * _i] == col) { \ 754f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp1[sliceheight * _i] += value; \ 764f8ff0b3SHong Zhang else vp1[sliceheight * _i] = value; \ 772d1451d4SHong Zhang inserted = PETSC_TRUE; \ 78d4002b98SHong Zhang goto a_noinsert; \ 79d4002b98SHong Zhang } \ 80d4002b98SHong Zhang } \ 819371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 829371c9d4SSatish Balay low1 = 0; \ 839371c9d4SSatish Balay high1 = nrow1; \ 849371c9d4SSatish Balay goto a_noinsert; \ 859371c9d4SSatish Balay } \ 869371c9d4SSatish Balay if (nonew == 1) { \ 879371c9d4SSatish Balay low1 = 0; \ 889371c9d4SSatish Balay high1 = nrow1; \ 899371c9d4SSatish Balay goto a_noinsert; \ 909371c9d4SSatish Balay } \ 9108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 9207e43b41SHong Zhang MatSeqXSELLReallocateSELL(A, am, 1, nrow1, a->sliidx, a->sliceheight, row / sliceheight, row, col, a->colidx, a->val, cp1, vp1, nonew, MatScalar); \ 93d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 94d4002b98SHong Zhang for (ii = nrow1 - 1; ii >= _i; ii--) { \ 954f8ff0b3SHong Zhang cp1[sliceheight * (ii + 1)] = cp1[sliceheight * ii]; \ 964f8ff0b3SHong Zhang vp1[sliceheight * (ii + 1)] = vp1[sliceheight * ii]; \ 97d4002b98SHong Zhang } \ 984f8ff0b3SHong Zhang cp1[sliceheight * _i] = col; \ 994f8ff0b3SHong Zhang vp1[sliceheight * _i] = value; \ 1009371c9d4SSatish Balay a->nz++; \ 1019371c9d4SSatish Balay nrow1++; \ 102d4002b98SHong Zhang a_noinsert:; \ 103d4002b98SHong Zhang a->rlen[row] = nrow1; \ 104d4002b98SHong Zhang } 105d4002b98SHong Zhang 106d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row, col, value, addv, orow, ocol) \ 107d4002b98SHong Zhang { \ 108d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 109d4002b98SHong Zhang else high2 = nrow2; \ 110d4002b98SHong Zhang lastcol2 = col; \ 111d4002b98SHong Zhang while (high2 - low2 > 5) { \ 112d4002b98SHong Zhang t = (low2 + high2) / 2; \ 1134f8ff0b3SHong Zhang if (cp2[sliceheight * t] > col) high2 = t; \ 114d4002b98SHong Zhang else low2 = t; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang for (_i = low2; _i < high2; _i++) { \ 1174f8ff0b3SHong Zhang if (cp2[sliceheight * _i] > col) break; \ 1184f8ff0b3SHong Zhang if (cp2[sliceheight * _i] == col) { \ 1194f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp2[sliceheight * _i] += value; \ 1204f8ff0b3SHong Zhang else vp2[sliceheight * _i] = value; \ 1212d1451d4SHong Zhang inserted = PETSC_TRUE; \ 122d4002b98SHong Zhang goto b_noinsert; \ 123d4002b98SHong Zhang } \ 124d4002b98SHong Zhang } \ 1259371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 1269371c9d4SSatish Balay low2 = 0; \ 1279371c9d4SSatish Balay high2 = nrow2; \ 1289371c9d4SSatish Balay goto b_noinsert; \ 1299371c9d4SSatish Balay } \ 1309371c9d4SSatish Balay if (nonew == 1) { \ 1319371c9d4SSatish Balay low2 = 0; \ 1329371c9d4SSatish Balay high2 = nrow2; \ 1339371c9d4SSatish Balay goto b_noinsert; \ 1349371c9d4SSatish Balay } \ 13508401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 13607e43b41SHong Zhang MatSeqXSELLReallocateSELL(B, bm, 1, nrow2, b->sliidx, b->sliceheight, row / sliceheight, row, col, b->colidx, b->val, cp2, vp2, nonew, MatScalar); \ 137d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 138d4002b98SHong Zhang for (ii = nrow2 - 1; ii >= _i; ii--) { \ 1394f8ff0b3SHong Zhang cp2[sliceheight * (ii + 1)] = cp2[sliceheight * ii]; \ 1404f8ff0b3SHong Zhang vp2[sliceheight * (ii + 1)] = vp2[sliceheight * ii]; \ 141d4002b98SHong Zhang } \ 1424f8ff0b3SHong Zhang cp2[sliceheight * _i] = col; \ 1434f8ff0b3SHong Zhang vp2[sliceheight * _i] = value; \ 1449371c9d4SSatish Balay b->nz++; \ 1459371c9d4SSatish Balay nrow2++; \ 146d4002b98SHong Zhang b_noinsert:; \ 147d4002b98SHong Zhang b->rlen[row] = nrow2; \ 148d4002b98SHong Zhang } 149d4002b98SHong Zhang 15043b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISELL(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 151d71ae5a4SJacob Faibussowitsch { 152d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 153d4002b98SHong Zhang PetscScalar value; 154d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, shift1, shift2; 155d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 156d4002b98SHong Zhang PetscBool roworiented = sell->roworiented; 157d4002b98SHong Zhang 158d4002b98SHong Zhang /* Some Variables required in the macro */ 159d4002b98SHong Zhang Mat A = sell->A; 160d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 161d4002b98SHong Zhang PetscBool ignorezeroentries = a->ignorezeroentries, found; 162d4002b98SHong Zhang Mat B = sell->B; 163d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 16407e43b41SHong Zhang PetscInt *cp1, *cp2, ii, _i, nrow1, nrow2, low1, high1, low2, high2, t, lastcol1, lastcol2, sliceheight = a->sliceheight; 165d4002b98SHong Zhang MatScalar *vp1, *vp2; 166d4002b98SHong Zhang 167d4002b98SHong Zhang PetscFunctionBegin; 168d4002b98SHong Zhang for (i = 0; i < m; i++) { 169d4002b98SHong Zhang if (im[i] < 0) continue; 1706bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 171d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 172d4002b98SHong Zhang row = im[i] - rstart; 173d4002b98SHong Zhang lastcol1 = -1; 17407e43b41SHong Zhang shift1 = a->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 1758e3a54c0SPierre Jolivet cp1 = PetscSafePointerPlusOffset(a->colidx, shift1); 1768e3a54c0SPierre Jolivet vp1 = PetscSafePointerPlusOffset(a->val, shift1); 177d4002b98SHong Zhang nrow1 = a->rlen[row]; 178d4002b98SHong Zhang low1 = 0; 179d4002b98SHong Zhang high1 = nrow1; 180d4002b98SHong Zhang lastcol2 = -1; 18107e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 1828e3a54c0SPierre Jolivet cp2 = PetscSafePointerPlusOffset(b->colidx, shift2); 1838e3a54c0SPierre Jolivet vp2 = PetscSafePointerPlusOffset(b->val, shift2); 184d4002b98SHong Zhang nrow2 = b->rlen[row]; 185d4002b98SHong Zhang low2 = 0; 186d4002b98SHong Zhang high2 = nrow2; 187d4002b98SHong Zhang 188d4002b98SHong Zhang for (j = 0; j < n; j++) { 189d4002b98SHong Zhang if (roworiented) value = v[i * n + j]; 190d4002b98SHong Zhang else value = v[i + j * m]; 191d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 192d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 193d4002b98SHong Zhang col = in[j] - cstart; 194d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A, row, col, value, addv, im[i], in[j], cp1, vp1, lastcol1, low1, high1); /* set one value */ 1952d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 1962d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) A->offloadmask = PETSC_OFFLOAD_CPU; 1972d1451d4SHong Zhang #endif 198f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 199f7d195e4SLawrence Mitchell continue; 200f7d195e4SLawrence Mitchell } else { 201f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 202d4002b98SHong Zhang if (mat->was_assembled) { 20348a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 204d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 205eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, in[j] + 1, 0, &col)); 206d4002b98SHong Zhang col--; 207d4002b98SHong Zhang #else 208d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 209d4002b98SHong Zhang #endif 210f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSELL *)sell->B->data)->nonew) { 2119566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 212d4002b98SHong Zhang col = in[j]; 213d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 214d4002b98SHong Zhang B = sell->B; 215d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 21607e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 217d4002b98SHong Zhang cp2 = b->colidx + shift2; 218d4002b98SHong Zhang vp2 = b->val + shift2; 219d4002b98SHong Zhang nrow2 = b->rlen[row]; 220d4002b98SHong Zhang low2 = 0; 221d4002b98SHong Zhang high2 = nrow2; 2222d1451d4SHong Zhang found = PETSC_FALSE; 223f7d195e4SLawrence Mitchell } else { 224f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 225f7d195e4SLawrence Mitchell } 226d4002b98SHong Zhang } else col = in[j]; 227d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B, row, col, value, addv, im[i], in[j], cp2, vp2, lastcol2, low2, high2); /* set one value */ 2282d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 2292d1451d4SHong Zhang if (B->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) B->offloadmask = PETSC_OFFLOAD_CPU; 2302d1451d4SHong Zhang #endif 231d4002b98SHong Zhang } 232d4002b98SHong Zhang } 233d4002b98SHong Zhang } else { 23428b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 235d4002b98SHong Zhang if (!sell->donotstash) { 236d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 237d4002b98SHong Zhang if (roworiented) { 2389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 239d4002b98SHong Zhang } else { 2409566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 241d4002b98SHong Zhang } 242d4002b98SHong Zhang } 243d4002b98SHong Zhang } 244d4002b98SHong Zhang } 2453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 246d4002b98SHong Zhang } 247d4002b98SHong Zhang 248ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISELL(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 249d71ae5a4SJacob Faibussowitsch { 250d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 251d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 252d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 253d4002b98SHong Zhang 254d4002b98SHong Zhang PetscFunctionBegin; 255d4002b98SHong Zhang for (i = 0; i < m; i++) { 25654c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 25754c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 258d4002b98SHong Zhang if (idxm[i] >= rstart && idxm[i] < rend) { 259d4002b98SHong Zhang row = idxm[i] - rstart; 260d4002b98SHong Zhang for (j = 0; j < n; j++) { 26154c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 26254c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 263d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 264d4002b98SHong Zhang col = idxn[j] - cstart; 2659566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A, 1, &row, 1, &col, v + i * n + j)); 266d4002b98SHong Zhang } else { 26748a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 268d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 269eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, idxn[j] + 1, 0, &col)); 270d4002b98SHong Zhang col--; 271d4002b98SHong Zhang #else 272d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 273d4002b98SHong Zhang #endif 274d4002b98SHong Zhang if ((col < 0) || (sell->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 27548a46eb9SPierre Jolivet else PetscCall(MatGetValues(sell->B, 1, &row, 1, &col, v + i * n + j)); 276d4002b98SHong Zhang } 277d4002b98SHong Zhang } 278d4002b98SHong Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 279d4002b98SHong Zhang } 2803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 281d4002b98SHong Zhang } 282d4002b98SHong Zhang 283ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat, MatAssemblyType mode) 284d71ae5a4SJacob Faibussowitsch { 285d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 286d4002b98SHong Zhang PetscInt nstash, reallocs; 287d4002b98SHong Zhang 288d4002b98SHong Zhang PetscFunctionBegin; 2893ba16761SJacob Faibussowitsch if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 290d4002b98SHong Zhang 2919566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 2929566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 2939566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 2943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 295d4002b98SHong Zhang } 296d4002b98SHong Zhang 297d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat, MatAssemblyType mode) 298d71ae5a4SJacob Faibussowitsch { 299d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 300d4002b98SHong Zhang PetscMPIInt n; 301d4002b98SHong Zhang PetscInt i, flg; 302d4002b98SHong Zhang PetscInt *row, *col; 303d4002b98SHong Zhang PetscScalar *val; 304d4002b98SHong Zhang PetscBool other_disassembled; 305d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 306d4002b98SHong Zhang PetscFunctionBegin; 307d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 308d4002b98SHong Zhang while (1) { 3099566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 310d4002b98SHong Zhang if (!flg) break; 311d4002b98SHong Zhang 312d4002b98SHong Zhang for (i = 0; i < n; i++) { /* assemble one by one */ 3139566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat, 1, row + i, 1, col + i, val + i, mat->insertmode)); 314d4002b98SHong Zhang } 315d4002b98SHong Zhang } 3169566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 317d4002b98SHong Zhang } 3182d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3192d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) sell->A->offloadmask = PETSC_OFFLOAD_CPU; 3202d1451d4SHong Zhang #endif 3219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A, mode)); 3229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A, mode)); 323d4002b98SHong Zhang 324d4002b98SHong Zhang /* 325d4002b98SHong Zhang determine if any processor has disassembled, if so we must 3266aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. 327d4002b98SHong Zhang */ 328d4002b98SHong Zhang /* 329d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 330d4002b98SHong Zhang no processor disassembled thus we can skip this stuff 331d4002b98SHong Zhang */ 332d4002b98SHong Zhang if (!((Mat_SeqSELL *)sell->B->data)->nonew) { 333462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3342d1451d4SHong Zhang if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISELL(mat)); 335d4002b98SHong Zhang } 33648a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISELL(mat)); 3372d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3382d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && sell->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) sell->B->offloadmask = PETSC_OFFLOAD_CPU; 3392d1451d4SHong Zhang #endif 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B, mode)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B, mode)); 3429566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 343f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 345d4002b98SHong Zhang 346d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 347f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL *)sell->A->data)->nonew) { 348d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 349462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 350d4002b98SHong Zhang } 3512d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3522d1451d4SHong Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 3532d1451d4SHong Zhang #endif 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355d4002b98SHong Zhang } 356d4002b98SHong Zhang 357ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISELL(Mat A) 358d71ae5a4SJacob Faibussowitsch { 359d4002b98SHong Zhang Mat_MPISELL *l = (Mat_MPISELL *)A->data; 360d4002b98SHong Zhang 361d4002b98SHong Zhang PetscFunctionBegin; 3629566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3639566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 3643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 365d4002b98SHong Zhang } 366d4002b98SHong Zhang 367ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPISELL(Mat A, Vec xx, Vec yy) 368d71ae5a4SJacob Faibussowitsch { 369d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 370d4002b98SHong Zhang PetscInt nt; 371d4002b98SHong Zhang 372d4002b98SHong Zhang PetscFunctionBegin; 3739566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 37408401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 3759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3769566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 3779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3789566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 3793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 380d4002b98SHong Zhang } 381d4002b98SHong Zhang 382fa078d78SJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A, Vec bb, Vec xx) 383d71ae5a4SJacob Faibussowitsch { 384d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 385d4002b98SHong Zhang 386d4002b98SHong Zhang PetscFunctionBegin; 3879566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 3883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 389d4002b98SHong Zhang } 390d4002b98SHong Zhang 391ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 392d71ae5a4SJacob Faibussowitsch { 393d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 394d4002b98SHong Zhang 395d4002b98SHong Zhang PetscFunctionBegin; 3969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 3989566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3999566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401d4002b98SHong Zhang } 402d4002b98SHong Zhang 403ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPISELL(Mat A, Vec xx, Vec yy) 404d71ae5a4SJacob Faibussowitsch { 405d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 406d4002b98SHong Zhang 407d4002b98SHong Zhang PetscFunctionBegin; 408d4002b98SHong Zhang /* do nondiagonal part */ 4099566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 410d4002b98SHong Zhang /* do local part */ 4119566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 412a29b4eb7SJunchao Zhang /* add partial results together */ 4139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 416d4002b98SHong Zhang } 417d4002b98SHong Zhang 418ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPISELL(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 419d71ae5a4SJacob Faibussowitsch { 420d4002b98SHong Zhang MPI_Comm comm; 421d4002b98SHong Zhang Mat_MPISELL *Asell = (Mat_MPISELL *)Amat->data, *Bsell; 422d4002b98SHong Zhang Mat Adia = Asell->A, Bdia, Aoff, Boff, *Aoffs, *Boffs; 423d4002b98SHong Zhang IS Me, Notme; 424d4002b98SHong Zhang PetscInt M, N, first, last, *notme, i; 425d4002b98SHong Zhang PetscMPIInt size; 426d4002b98SHong Zhang 427d4002b98SHong Zhang PetscFunctionBegin; 428d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 4299371c9d4SSatish Balay Bsell = (Mat_MPISELL *)Bmat->data; 4309371c9d4SSatish Balay Bdia = Bsell->A; 4319566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, f)); 4323ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 4339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 4349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4353ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 436d4002b98SHong Zhang 437d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4389566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 4399566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 4409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 441d4002b98SHong Zhang for (i = 0; i < first; i++) notme[i] = i; 442d4002b98SHong Zhang for (i = last; i < M; i++) notme[i - last + first] = i; 4439566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 4449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 4459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 446d4002b98SHong Zhang Aoff = Aoffs[0]; 4479566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 448d4002b98SHong Zhang Boff = Boffs[0]; 4499566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 4509566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 4519566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 4529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4549566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 4553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 456d4002b98SHong Zhang } 457d4002b98SHong Zhang 458ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 459d71ae5a4SJacob Faibussowitsch { 460d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 461d4002b98SHong Zhang 462d4002b98SHong Zhang PetscFunctionBegin; 463d4002b98SHong Zhang /* do nondiagonal part */ 4649566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 465d4002b98SHong Zhang /* do local part */ 4669566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 467e4a140f6SJunchao Zhang /* add partial results together */ 4689566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4699566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471d4002b98SHong Zhang } 472d4002b98SHong Zhang 473d4002b98SHong Zhang /* 474d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 475d4002b98SHong Zhang diagonal block 476d4002b98SHong Zhang */ 477ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISELL(Mat A, Vec v) 478d71ae5a4SJacob Faibussowitsch { 479d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 480d4002b98SHong Zhang 481d4002b98SHong Zhang PetscFunctionBegin; 48208401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 483aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 4849566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486d4002b98SHong Zhang } 487d4002b98SHong Zhang 488ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPISELL(Mat A, PetscScalar aa) 489d71ae5a4SJacob Faibussowitsch { 490d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 491d4002b98SHong Zhang 492d4002b98SHong Zhang PetscFunctionBegin; 4939566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 4949566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 4953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 496d4002b98SHong Zhang } 497d4002b98SHong Zhang 498d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPISELL(Mat mat) 499d71ae5a4SJacob Faibussowitsch { 500d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 501d4002b98SHong Zhang 502d4002b98SHong Zhang PetscFunctionBegin; 5033ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5049566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 5059566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 5069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 5079566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 508d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 509eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&sell->colmap)); 510d4002b98SHong Zhang #else 5119566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 512d4002b98SHong Zhang #endif 5139566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 5149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 5159566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 5169566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 5179566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 5189566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 519d4002b98SHong Zhang 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 5239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 5249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISELLSetPreallocation_C", NULL)); 5259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpiaij_C", NULL)); 526b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 527b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpisellcuda_C", NULL)); 528b5917f1bSHong Zhang #endif 5299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 5303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 531d4002b98SHong Zhang } 532d4002b98SHong Zhang 533d4002b98SHong Zhang #include <petscdraw.h> 534ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 535d71ae5a4SJacob Faibussowitsch { 536d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 537d4002b98SHong Zhang PetscMPIInt rank = sell->rank, size = sell->size; 538d4002b98SHong Zhang PetscBool isdraw, iascii, isbinary; 539d4002b98SHong Zhang PetscViewer sviewer; 540d4002b98SHong Zhang PetscViewerFormat format; 541d4002b98SHong Zhang 542d4002b98SHong Zhang PetscFunctionBegin; 5439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 5449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 5459566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 546d4002b98SHong Zhang if (iascii) { 5479566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 548d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 549d4002b98SHong Zhang MatInfo info; 5506335e310SSatish Balay PetscInt *inodes; 551d4002b98SHong Zhang 5529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 5539566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 5549566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, NULL, &inodes, NULL)); 5559566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 556d4002b98SHong Zhang if (!inodes) { 5579371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5589371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 559d4002b98SHong Zhang } else { 5609371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5619371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 562d4002b98SHong Zhang } 5639566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A, MAT_LOCAL, &info)); 5649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5659566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B, MAT_LOCAL, &info)); 5669566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5679566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 5709566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx, viewer)); 5713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 572d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 573d4002b98SHong Zhang PetscInt inodecount, inodelimit, *inodes; 5749566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, &inodecount, &inodes, &inodelimit)); 575d4002b98SHong Zhang if (inodes) { 5769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 577d4002b98SHong Zhang } else { 5789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 579d4002b98SHong Zhang } 5803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 581d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 5823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 583d4002b98SHong Zhang } 584d4002b98SHong Zhang } else if (isbinary) { 585d4002b98SHong Zhang if (size == 1) { 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A, ((PetscObject)mat)->name)); 5879566063dSJacob Faibussowitsch PetscCall(MatView(sell->A, viewer)); 588d4002b98SHong Zhang } else { 5899566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 590d4002b98SHong Zhang } 5913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 592d4002b98SHong Zhang } else if (isdraw) { 593d4002b98SHong Zhang PetscDraw draw; 594d4002b98SHong Zhang PetscBool isnull; 5959566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 5969566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 5973ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 598d4002b98SHong Zhang } 599d4002b98SHong Zhang 600d4002b98SHong Zhang { 601d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 602d4002b98SHong Zhang Mat A; 603d4002b98SHong Zhang Mat_SeqSELL *Aloc; 604d4002b98SHong Zhang PetscInt M = mat->rmap->N, N = mat->cmap->N, *acolidx, row, col, i, j; 605d4002b98SHong Zhang MatScalar *aval; 606d4002b98SHong Zhang PetscBool isnonzero; 607d4002b98SHong Zhang 6089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 609dd400576SPatrick Sanan if (rank == 0) { 6109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 611d4002b98SHong Zhang } else { 6129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 613d4002b98SHong Zhang } 614d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 6159566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISELL)); 6169566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, 0, NULL, 0, NULL)); 6179566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 618d4002b98SHong Zhang 619d4002b98SHong Zhang /* copy over the A part */ 620d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->A->data; 6219371c9d4SSatish Balay acolidx = Aloc->colidx; 6229371c9d4SSatish Balay aval = Aloc->val; 623d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { /* loop over slices */ 624d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 62507e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 626d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 62707e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 628d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6299566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 630d4002b98SHong Zhang } 6319371c9d4SSatish Balay aval++; 6329371c9d4SSatish Balay acolidx++; 633d4002b98SHong Zhang } 634d4002b98SHong Zhang } 635d4002b98SHong Zhang 636d4002b98SHong Zhang /* copy over the B part */ 637d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->B->data; 6389371c9d4SSatish Balay acolidx = Aloc->colidx; 6399371c9d4SSatish Balay aval = Aloc->val; 640d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { 641d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 64207e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 643d4002b98SHong Zhang if (isnonzero) { 64407e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 645d4002b98SHong Zhang col = sell->garray[*acolidx]; 6469566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 647d4002b98SHong Zhang } 6489371c9d4SSatish Balay aval++; 6499371c9d4SSatish Balay acolidx++; 650d4002b98SHong Zhang } 651d4002b98SHong Zhang } 652d4002b98SHong Zhang 6539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 6549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 655d4002b98SHong Zhang /* 656d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 657d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 658d4002b98SHong Zhang */ 6599566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 660dd400576SPatrick Sanan if (rank == 0) { 661f4f49eeaSPierre Jolivet PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL *)A->data)->A, ((PetscObject)mat)->name)); 662f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSELL(((Mat_MPISELL *)A->data)->A, sviewer)); 663d4002b98SHong Zhang } 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 6659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 666d4002b98SHong Zhang } 6673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 668d4002b98SHong Zhang } 669d4002b98SHong Zhang 670ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL(Mat mat, PetscViewer viewer) 671d71ae5a4SJacob Faibussowitsch { 672d4002b98SHong Zhang PetscBool iascii, isdraw, issocket, isbinary; 673d4002b98SHong Zhang 674d4002b98SHong Zhang PetscFunctionBegin; 6759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 6779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 6789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 67948a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat, viewer)); 6803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 681d4002b98SHong Zhang } 682d4002b98SHong Zhang 683ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPISELL(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 684d71ae5a4SJacob Faibussowitsch { 685d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 686d4002b98SHong Zhang 687d4002b98SHong Zhang PetscFunctionBegin; 6889566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B, NULL, nghosts)); 689d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 6903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 691d4002b98SHong Zhang } 692d4002b98SHong Zhang 693ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISELL(Mat matin, MatInfoType flag, MatInfo *info) 694d71ae5a4SJacob Faibussowitsch { 695d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 696d4002b98SHong Zhang Mat A = mat->A, B = mat->B; 6973966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 698d4002b98SHong Zhang 699d4002b98SHong Zhang PetscFunctionBegin; 700d4002b98SHong Zhang info->block_size = 1.0; 7019566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 702d4002b98SHong Zhang 7039371c9d4SSatish Balay isend[0] = info->nz_used; 7049371c9d4SSatish Balay isend[1] = info->nz_allocated; 7059371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7069371c9d4SSatish Balay isend[3] = info->memory; 7079371c9d4SSatish Balay isend[4] = info->mallocs; 708d4002b98SHong Zhang 7099566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 710d4002b98SHong Zhang 7119371c9d4SSatish Balay isend[0] += info->nz_used; 7129371c9d4SSatish Balay isend[1] += info->nz_allocated; 7139371c9d4SSatish Balay isend[2] += info->nz_unneeded; 7149371c9d4SSatish Balay isend[3] += info->memory; 7159371c9d4SSatish Balay isend[4] += info->mallocs; 716d4002b98SHong Zhang if (flag == MAT_LOCAL) { 717d4002b98SHong Zhang info->nz_used = isend[0]; 718d4002b98SHong Zhang info->nz_allocated = isend[1]; 719d4002b98SHong Zhang info->nz_unneeded = isend[2]; 720d4002b98SHong Zhang info->memory = isend[3]; 721d4002b98SHong Zhang info->mallocs = isend[4]; 722d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 723462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 724d4002b98SHong Zhang 725d4002b98SHong Zhang info->nz_used = irecv[0]; 726d4002b98SHong Zhang info->nz_allocated = irecv[1]; 727d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 728d4002b98SHong Zhang info->memory = irecv[3]; 729d4002b98SHong Zhang info->mallocs = irecv[4]; 730d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 731462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 732d4002b98SHong Zhang 733d4002b98SHong Zhang info->nz_used = irecv[0]; 734d4002b98SHong Zhang info->nz_allocated = irecv[1]; 735d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 736d4002b98SHong Zhang info->memory = irecv[3]; 737d4002b98SHong Zhang info->mallocs = irecv[4]; 738d4002b98SHong Zhang } 739d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 740d4002b98SHong Zhang info->fill_ratio_needed = 0; 741d4002b98SHong Zhang info->factor_mallocs = 0; 7423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 743d4002b98SHong Zhang } 744d4002b98SHong Zhang 74543b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISELL(Mat A, MatOption op, PetscBool flg) 746d71ae5a4SJacob Faibussowitsch { 747d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 748d4002b98SHong Zhang 749d4002b98SHong Zhang PetscFunctionBegin; 750d4002b98SHong Zhang switch (op) { 751d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 752d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 753d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 754d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 755d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 756d4002b98SHong Zhang case MAT_USE_INODES: 757d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 758d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7599566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7609566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 761d4002b98SHong Zhang break; 762d4002b98SHong Zhang case MAT_ROW_ORIENTED: 763d4002b98SHong Zhang MatCheckPreallocated(A, 1); 764d4002b98SHong Zhang a->roworiented = flg; 765d4002b98SHong Zhang 7669566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7679566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 768d4002b98SHong Zhang break; 7698c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 770d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 771d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 772d71ae5a4SJacob Faibussowitsch break; 773d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 774d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 775d71ae5a4SJacob Faibussowitsch break; 776d4002b98SHong Zhang case MAT_SPD: 777d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 778d71ae5a4SJacob Faibussowitsch break; 779d4002b98SHong Zhang case MAT_SYMMETRIC: 780d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 782d4002b98SHong Zhang break; 783d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 784d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 786d4002b98SHong Zhang break; 787d4002b98SHong Zhang case MAT_HERMITIAN: 788d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7899566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 790d4002b98SHong Zhang break; 791d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 792d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7939566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 794d4002b98SHong Zhang break; 795b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 796b94d7dedSBarry Smith MatCheckPreallocated(A, 1); 797b94d7dedSBarry Smith PetscCall(MatSetOption(a->A, op, flg)); 798b94d7dedSBarry Smith break; 799d71ae5a4SJacob Faibussowitsch default: 800d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 801d4002b98SHong Zhang } 8023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803d4002b98SHong Zhang } 804d4002b98SHong Zhang 805ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISELL(Mat mat, Vec ll, Vec rr) 806d71ae5a4SJacob Faibussowitsch { 807d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 808d4002b98SHong Zhang Mat a = sell->A, b = sell->B; 809d4002b98SHong Zhang PetscInt s1, s2, s3; 810d4002b98SHong Zhang 811d4002b98SHong Zhang PetscFunctionBegin; 8129566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 813d4002b98SHong Zhang if (rr) { 8149566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 81508401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 816d4002b98SHong Zhang /* Overlap communication with computation. */ 8179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 818d4002b98SHong Zhang } 819d4002b98SHong Zhang if (ll) { 8209566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 82108401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 822dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 823d4002b98SHong Zhang } 824d4002b98SHong Zhang /* scale the diagonal block */ 825dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 826d4002b98SHong Zhang 827d4002b98SHong Zhang if (rr) { 828d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 830dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, sell->lvec); 831d4002b98SHong Zhang } 8323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 833d4002b98SHong Zhang } 834d4002b98SHong Zhang 835ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 836d71ae5a4SJacob Faibussowitsch { 837d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 838d4002b98SHong Zhang 839d4002b98SHong Zhang PetscFunctionBegin; 8409566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 842d4002b98SHong Zhang } 843d4002b98SHong Zhang 844ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISELL(Mat A, Mat B, PetscBool *flag) 845d71ae5a4SJacob Faibussowitsch { 846d4002b98SHong Zhang Mat_MPISELL *matB = (Mat_MPISELL *)B->data, *matA = (Mat_MPISELL *)A->data; 847d4002b98SHong Zhang Mat a, b, c, d; 848d4002b98SHong Zhang PetscBool flg; 849d4002b98SHong Zhang 850d4002b98SHong Zhang PetscFunctionBegin; 8519371c9d4SSatish Balay a = matA->A; 8529371c9d4SSatish Balay b = matA->B; 8539371c9d4SSatish Balay c = matB->A; 8549371c9d4SSatish Balay d = matB->B; 855d4002b98SHong Zhang 8569566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 85748a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 858462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 8593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 860d4002b98SHong Zhang } 861d4002b98SHong Zhang 862ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISELL(Mat A, Mat B, MatStructure str) 863d71ae5a4SJacob Faibussowitsch { 864d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 865d4002b98SHong Zhang Mat_MPISELL *b = (Mat_MPISELL *)B->data; 866d4002b98SHong Zhang 867d4002b98SHong Zhang PetscFunctionBegin; 868d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 869d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 870d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 871d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 872d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 873d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 874d4002b98SHong Zhang then copying the submatrices */ 8759566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 876d4002b98SHong Zhang } else { 8779566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 8789566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 879d4002b98SHong Zhang } 8803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 881d4002b98SHong Zhang } 882d4002b98SHong Zhang 883ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPISELL(Mat A) 884d71ae5a4SJacob Faibussowitsch { 885d4002b98SHong Zhang PetscFunctionBegin; 8869566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 8873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 888d4002b98SHong Zhang } 889d4002b98SHong Zhang 890ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISELL(Mat mat) 891d71ae5a4SJacob Faibussowitsch { 8925f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8935f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 894d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 895d4002b98SHong Zhang 8969566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8979566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8985f80ce2aSJacob Faibussowitsch } 8993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 900d4002b98SHong Zhang } 901d4002b98SHong Zhang 902ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISELL(Mat A) 903d71ae5a4SJacob Faibussowitsch { 904d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 905d4002b98SHong Zhang 906d4002b98SHong Zhang PetscFunctionBegin; 9079566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 9089566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 9093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 910d4002b98SHong Zhang } 911d4002b98SHong Zhang 912ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 913d71ae5a4SJacob Faibussowitsch { 914d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 915d4002b98SHong Zhang 916d4002b98SHong Zhang PetscFunctionBegin; 9179566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 9189566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920d4002b98SHong Zhang } 921d4002b98SHong Zhang 922ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A, const PetscScalar **values) 923d71ae5a4SJacob Faibussowitsch { 924d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 925d4002b98SHong Zhang 926d4002b98SHong Zhang PetscFunctionBegin; 9279566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 928d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 9293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 930d4002b98SHong Zhang } 931d4002b98SHong Zhang 932d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPISELL(Mat x, PetscRandom rctx) 933d71ae5a4SJacob Faibussowitsch { 934d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)x->data; 935d4002b98SHong Zhang 936d4002b98SHong Zhang PetscFunctionBegin; 9379566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A, rctx)); 9389566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B, rctx)); 9399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 9409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 9413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 942d4002b98SHong Zhang } 943d4002b98SHong Zhang 94443b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetFromOptions_MPISELL(Mat A, PetscOptionItems *PetscOptionsObject) 945d71ae5a4SJacob Faibussowitsch { 946d4002b98SHong Zhang PetscFunctionBegin; 947d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPISELL options"); 948d0609cedSBarry Smith PetscOptionsHeadEnd(); 9493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 950d4002b98SHong Zhang } 951d4002b98SHong Zhang 952ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPISELL(Mat Y, PetscScalar a) 953d71ae5a4SJacob Faibussowitsch { 954d4002b98SHong Zhang Mat_MPISELL *msell = (Mat_MPISELL *)Y->data; 955d4002b98SHong Zhang Mat_SeqSELL *sell = (Mat_SeqSELL *)msell->A->data; 956d4002b98SHong Zhang 957d4002b98SHong Zhang PetscFunctionBegin; 958d4002b98SHong Zhang if (!Y->preallocated) { 9599566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y, 1, NULL, 0, NULL)); 960d4002b98SHong Zhang } else if (!sell->nz) { 961d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9629566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A, 1, NULL)); 963d4002b98SHong Zhang sell->nonew = nonew; 964d4002b98SHong Zhang } 9659566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 9663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 967d4002b98SHong Zhang } 968d4002b98SHong Zhang 969ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISELL(Mat A, PetscBool *missing, PetscInt *d) 970d71ae5a4SJacob Faibussowitsch { 971d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 972d4002b98SHong Zhang 973d4002b98SHong Zhang PetscFunctionBegin; 97408401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 9759566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 976d4002b98SHong Zhang if (d) { 977d4002b98SHong Zhang PetscInt rstart; 9789566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 979d4002b98SHong Zhang *d += rstart; 980d4002b98SHong Zhang } 9813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 982d4002b98SHong Zhang } 983d4002b98SHong Zhang 984ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A, Mat *a) 985d71ae5a4SJacob Faibussowitsch { 986d4002b98SHong Zhang PetscFunctionBegin; 987d4002b98SHong Zhang *a = ((Mat_MPISELL *)A->data)->A; 9883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 989d4002b98SHong Zhang } 990d4002b98SHong Zhang 99143b34f9dSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISELL(Mat mat) 99243b34f9dSJacob Faibussowitsch { 99343b34f9dSJacob Faibussowitsch Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 99443b34f9dSJacob Faibussowitsch 99543b34f9dSJacob Faibussowitsch PetscFunctionBegin; 99643b34f9dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 99743b34f9dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 99843b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 99943b34f9dSJacob Faibussowitsch } 100043b34f9dSJacob Faibussowitsch 100143b34f9dSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 100243b34f9dSJacob Faibussowitsch { 100343b34f9dSJacob Faibussowitsch Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 100443b34f9dSJacob Faibussowitsch 100543b34f9dSJacob Faibussowitsch PetscFunctionBegin; 100643b34f9dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 100743b34f9dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 100843b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100943b34f9dSJacob Faibussowitsch } 101043b34f9dSJacob Faibussowitsch 101143b34f9dSJacob Faibussowitsch static PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[]) 101243b34f9dSJacob Faibussowitsch { 101343b34f9dSJacob Faibussowitsch Mat_MPISELL *b; 101443b34f9dSJacob Faibussowitsch 101543b34f9dSJacob Faibussowitsch PetscFunctionBegin; 101643b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 101743b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 101843b34f9dSJacob Faibussowitsch b = (Mat_MPISELL *)B->data; 101943b34f9dSJacob Faibussowitsch 102043b34f9dSJacob Faibussowitsch if (!B->preallocated) { 102143b34f9dSJacob Faibussowitsch /* Explicitly create 2 MATSEQSELL matrices. */ 102243b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 102343b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 102443b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 102543b34f9dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSELL)); 102643b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 102743b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, B->cmap->N, B->rmap->n, B->cmap->N)); 102843b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 102943b34f9dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQSELL)); 103043b34f9dSJacob Faibussowitsch } 103143b34f9dSJacob Faibussowitsch 103243b34f9dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A, d_rlenmax, d_rlen)); 103343b34f9dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B, o_rlenmax, o_rlen)); 103443b34f9dSJacob Faibussowitsch B->preallocated = PETSC_TRUE; 103543b34f9dSJacob Faibussowitsch B->was_assembled = PETSC_FALSE; 103643b34f9dSJacob Faibussowitsch /* 103743b34f9dSJacob Faibussowitsch critical for MatAssemblyEnd to work. 103843b34f9dSJacob Faibussowitsch MatAssemblyBegin checks it to set up was_assembled 103943b34f9dSJacob Faibussowitsch and MatAssemblyEnd checks was_assembled to determine whether to build garray 104043b34f9dSJacob Faibussowitsch */ 104143b34f9dSJacob Faibussowitsch B->assembled = PETSC_FALSE; 104243b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104343b34f9dSJacob Faibussowitsch } 104443b34f9dSJacob Faibussowitsch 104543b34f9dSJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISELL(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 104643b34f9dSJacob Faibussowitsch { 104743b34f9dSJacob Faibussowitsch Mat mat; 104843b34f9dSJacob Faibussowitsch Mat_MPISELL *a, *oldmat = (Mat_MPISELL *)matin->data; 104943b34f9dSJacob Faibussowitsch 105043b34f9dSJacob Faibussowitsch PetscFunctionBegin; 105143b34f9dSJacob Faibussowitsch *newmat = NULL; 105243b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 105343b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 105443b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 105543b34f9dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 105643b34f9dSJacob Faibussowitsch a = (Mat_MPISELL *)mat->data; 105743b34f9dSJacob Faibussowitsch 105843b34f9dSJacob Faibussowitsch mat->factortype = matin->factortype; 105943b34f9dSJacob Faibussowitsch mat->assembled = PETSC_TRUE; 106043b34f9dSJacob Faibussowitsch mat->insertmode = NOT_SET_VALUES; 106143b34f9dSJacob Faibussowitsch mat->preallocated = PETSC_TRUE; 106243b34f9dSJacob Faibussowitsch 106343b34f9dSJacob Faibussowitsch a->size = oldmat->size; 106443b34f9dSJacob Faibussowitsch a->rank = oldmat->rank; 106543b34f9dSJacob Faibussowitsch a->donotstash = oldmat->donotstash; 106643b34f9dSJacob Faibussowitsch a->roworiented = oldmat->roworiented; 106743b34f9dSJacob Faibussowitsch a->rowindices = NULL; 106843b34f9dSJacob Faibussowitsch a->rowvalues = NULL; 106943b34f9dSJacob Faibussowitsch a->getrowactive = PETSC_FALSE; 107043b34f9dSJacob Faibussowitsch 107143b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 107243b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 107343b34f9dSJacob Faibussowitsch 107443b34f9dSJacob Faibussowitsch if (oldmat->colmap) { 107543b34f9dSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 107643b34f9dSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 107743b34f9dSJacob Faibussowitsch #else 107843b34f9dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 107943b34f9dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 108043b34f9dSJacob Faibussowitsch #endif 108143b34f9dSJacob Faibussowitsch } else a->colmap = NULL; 108243b34f9dSJacob Faibussowitsch if (oldmat->garray) { 108343b34f9dSJacob Faibussowitsch PetscInt len; 108443b34f9dSJacob Faibussowitsch len = oldmat->B->cmap->n; 108543b34f9dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 108643b34f9dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 108743b34f9dSJacob Faibussowitsch } else a->garray = NULL; 108843b34f9dSJacob Faibussowitsch 108943b34f9dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 109043b34f9dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 109143b34f9dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 109243b34f9dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 109343b34f9dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 109443b34f9dSJacob Faibussowitsch *newmat = mat; 109543b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109643b34f9dSJacob Faibussowitsch } 109743b34f9dSJacob Faibussowitsch 109843b34f9dSJacob Faibussowitsch static const struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 1099f4259b30SLisandro Dalcin NULL, 1100f4259b30SLisandro Dalcin NULL, 1101d4002b98SHong Zhang MatMult_MPISELL, 1102d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 1103d4002b98SHong Zhang MatMultTranspose_MPISELL, 1104d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin NULL, 1107f4259b30SLisandro Dalcin NULL, 1108f4259b30SLisandro Dalcin /*10*/ NULL, 1109f4259b30SLisandro Dalcin NULL, 1110f4259b30SLisandro Dalcin NULL, 1111d4002b98SHong Zhang MatSOR_MPISELL, 1112f4259b30SLisandro Dalcin NULL, 1113d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 1114d4002b98SHong Zhang MatEqual_MPISELL, 1115d4002b98SHong Zhang MatGetDiagonal_MPISELL, 1116d4002b98SHong Zhang MatDiagonalScale_MPISELL, 1117f4259b30SLisandro Dalcin NULL, 1118d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 1119d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 1120d4002b98SHong Zhang MatSetOption_MPISELL, 1121d4002b98SHong Zhang MatZeroEntries_MPISELL, 1122f4259b30SLisandro Dalcin /*24*/ NULL, 1123f4259b30SLisandro Dalcin NULL, 1124f4259b30SLisandro Dalcin NULL, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin NULL, 1127d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin NULL, 1130d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1131f4259b30SLisandro Dalcin NULL, 1132d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1133f4259b30SLisandro Dalcin NULL, 1134f4259b30SLisandro Dalcin NULL, 1135f4259b30SLisandro Dalcin NULL, 1136f4259b30SLisandro Dalcin NULL, 1137f4259b30SLisandro Dalcin /*39*/ NULL, 1138f4259b30SLisandro Dalcin NULL, 1139f4259b30SLisandro Dalcin NULL, 1140d4002b98SHong Zhang MatGetValues_MPISELL, 1141d4002b98SHong Zhang MatCopy_MPISELL, 1142f4259b30SLisandro Dalcin /*44*/ NULL, 1143d4002b98SHong Zhang MatScale_MPISELL, 1144d4002b98SHong Zhang MatShift_MPISELL, 1145d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1146f4259b30SLisandro Dalcin NULL, 1147d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1148f4259b30SLisandro Dalcin NULL, 1149f4259b30SLisandro Dalcin NULL, 1150f4259b30SLisandro Dalcin NULL, 1151f4259b30SLisandro Dalcin NULL, 1152d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1153f4259b30SLisandro Dalcin NULL, 1154d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1155f4259b30SLisandro Dalcin NULL, 1156f4259b30SLisandro Dalcin NULL, 1157f4259b30SLisandro Dalcin /*59*/ NULL, 1158d4002b98SHong Zhang MatDestroy_MPISELL, 1159d4002b98SHong Zhang MatView_MPISELL, 1160f4259b30SLisandro Dalcin NULL, 1161f4259b30SLisandro Dalcin NULL, 1162f4259b30SLisandro Dalcin /*64*/ NULL, 1163f4259b30SLisandro Dalcin NULL, 1164f4259b30SLisandro Dalcin NULL, 1165f4259b30SLisandro Dalcin NULL, 1166f4259b30SLisandro Dalcin NULL, 1167f4259b30SLisandro Dalcin /*69*/ NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin NULL, 1170f4259b30SLisandro Dalcin NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin NULL, 1173d4002b98SHong Zhang /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */ 1174d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1175f4259b30SLisandro Dalcin NULL, 1176f4259b30SLisandro Dalcin NULL, 1177f4259b30SLisandro Dalcin NULL, 1178f4259b30SLisandro Dalcin /*80*/ NULL, 1179f4259b30SLisandro Dalcin NULL, 1180f4259b30SLisandro Dalcin NULL, 1181f4259b30SLisandro Dalcin /*83*/ NULL, 1182f4259b30SLisandro Dalcin NULL, 1183f4259b30SLisandro Dalcin NULL, 1184f4259b30SLisandro Dalcin NULL, 1185f4259b30SLisandro Dalcin NULL, 1186f4259b30SLisandro Dalcin NULL, 1187f4259b30SLisandro Dalcin /*89*/ NULL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin NULL, 1190f4259b30SLisandro Dalcin NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin /*94*/ NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin NULL, 1195f4259b30SLisandro Dalcin NULL, 1196f4259b30SLisandro Dalcin NULL, 1197f4259b30SLisandro Dalcin /*99*/ NULL, 1198f4259b30SLisandro Dalcin NULL, 1199f4259b30SLisandro Dalcin NULL, 1200d4002b98SHong Zhang MatConjugate_MPISELL, 1201f4259b30SLisandro Dalcin NULL, 1202f4259b30SLisandro Dalcin /*104*/ NULL, 1203d4002b98SHong Zhang MatRealPart_MPISELL, 1204d4002b98SHong Zhang MatImaginaryPart_MPISELL, 1205f4259b30SLisandro Dalcin NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin /*109*/ NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin NULL, 1210f4259b30SLisandro Dalcin NULL, 1211d4002b98SHong Zhang MatMissingDiagonal_MPISELL, 1212f4259b30SLisandro Dalcin /*114*/ NULL, 1213f4259b30SLisandro Dalcin NULL, 1214d4002b98SHong Zhang MatGetGhosts_MPISELL, 1215f4259b30SLisandro Dalcin NULL, 1216f4259b30SLisandro Dalcin NULL, 121743b34f9dSJacob Faibussowitsch /*119*/ MatMultDiagonalBlock_MPISELL, 1218f4259b30SLisandro Dalcin NULL, 1219f4259b30SLisandro Dalcin NULL, 1220f4259b30SLisandro Dalcin NULL, 1221f4259b30SLisandro Dalcin NULL, 1222f4259b30SLisandro Dalcin /*124*/ NULL, 1223f4259b30SLisandro Dalcin NULL, 1224d4002b98SHong Zhang MatInvertBlockDiagonal_MPISELL, 1225f4259b30SLisandro Dalcin NULL, 1226f4259b30SLisandro Dalcin NULL, 1227f4259b30SLisandro Dalcin /*129*/ NULL, 1228f4259b30SLisandro Dalcin NULL, 1229f4259b30SLisandro Dalcin NULL, 1230f4259b30SLisandro Dalcin NULL, 1231f4259b30SLisandro Dalcin NULL, 1232f4259b30SLisandro Dalcin /*134*/ NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin NULL, 1236f4259b30SLisandro Dalcin NULL, 1237f4259b30SLisandro Dalcin /*139*/ NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 1240d4002b98SHong Zhang MatFDColoringSetUp_MPIXAIJ, 1241f4259b30SLisandro Dalcin NULL, 1242d70f29a3SPierre Jolivet /*144*/ NULL, 1243d70f29a3SPierre Jolivet NULL, 1244d70f29a3SPierre Jolivet NULL, 124599a7f59eSMark Adams NULL, 124699a7f59eSMark Adams NULL, 12477fb60732SBarry Smith NULL, 1248dec0b466SHong Zhang /*150*/ NULL, 1249eede4a3fSMark Adams NULL, 12504cc2b5b5SPierre Jolivet NULL, 125142ce410bSJunchao Zhang NULL, 125242ce410bSJunchao Zhang NULL, 1253dec0b466SHong Zhang NULL}; 1254d4002b98SHong Zhang 1255d4002b98SHong Zhang /*@C 125611a5261eSBarry Smith MatMPISELLSetPreallocation - Preallocates memory for a `MATMPISELL` sparse parallel matrix in sell format. 1257d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 125867be906fSBarry Smith setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 1259d4002b98SHong Zhang 1260d083f849SBarry Smith Collective 1261d4002b98SHong Zhang 1262d4002b98SHong Zhang Input Parameters: 1263d4002b98SHong Zhang + B - the matrix 1264d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1265d4002b98SHong Zhang (same value is used for all local rows) 1266d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1267d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 126867be906fSBarry Smith or NULL (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 1269d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1270d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1271d4002b98SHong Zhang the diagonal entry even if it is zero. 1272d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1273d4002b98SHong Zhang submatrix (same value is used for all local rows). 1274d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1275d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 127667be906fSBarry Smith each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 1277d4002b98SHong Zhang structure. The size of this array is equal to the number 1278d4002b98SHong Zhang of local rows, i.e 'm'. 1279d4002b98SHong Zhang 1280d4002b98SHong Zhang Example usage: 1281d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1282d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1283d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 128467be906fSBarry Smith as follows 1285d4002b98SHong Zhang 1286d4002b98SHong Zhang .vb 1287d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1288d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1289d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1290d4002b98SHong Zhang ------------------------------------- 1291d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1292d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1293d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1294d4002b98SHong Zhang ------------------------------------- 1295d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1296d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1297d4002b98SHong Zhang .ve 1298d4002b98SHong Zhang 129927430b45SBarry Smith This can be represented as a collection of submatrices as 1300d4002b98SHong Zhang 1301d4002b98SHong Zhang .vb 1302d4002b98SHong Zhang A B C 1303d4002b98SHong Zhang D E F 1304d4002b98SHong Zhang G H I 1305d4002b98SHong Zhang .ve 1306d4002b98SHong Zhang 1307d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1308d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1309d4002b98SHong Zhang 1310d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1311d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1312d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1313d4002b98SHong Zhang 1314d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1315d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1316d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1317d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 131827430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 1319*5163b989SNuno Nobre matrix, and [DF] as another SeqSELL matrix. 1320d4002b98SHong Zhang 132167be906fSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 1322*5163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and o_nz 1323*5163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 1324*5163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 1325*5163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 132627430b45SBarry Smith In this case, the values of d_nz,o_nz are 1327d4002b98SHong Zhang .vb 132827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 132927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 133027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 1331d4002b98SHong Zhang .ve 1332d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1333d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1334d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1335d4002b98SHong Zhang 34 values. 1336d4002b98SHong Zhang 133767be906fSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 1338a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 133927430b45SBarry Smith In the above case the values for d_nnz,o_nnz are 1340d4002b98SHong Zhang .vb 134127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 134227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 134327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 1344d4002b98SHong Zhang .ve 1345d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1346d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1347d4002b98SHong Zhang 1348d4002b98SHong Zhang Level: intermediate 1349d4002b98SHong Zhang 135067be906fSBarry Smith Notes: 135167be906fSBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 135267be906fSBarry Smith 135367be906fSBarry Smith The stored row and column indices begin with zero. 135467be906fSBarry Smith 135567be906fSBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 135667be906fSBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 135767be906fSBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 135867be906fSBarry Smith 135967be906fSBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 136067be906fSBarry Smith as the submatrix which is obtained by extraction the part corresponding to 136167be906fSBarry Smith the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 136267be906fSBarry Smith first row that belongs to the processor, r2 is the last row belonging to 136367be906fSBarry Smith the this processor, and c1-c2 is range of indices of the local part of a 136467be906fSBarry Smith vector suitable for applying the matrix to. This is an mxn matrix. In the 136567be906fSBarry Smith common case of a square matrix, the row and column ranges are the same and 136667be906fSBarry Smith the DIAGONAL part is also square. The remaining portion of the local 136767be906fSBarry Smith submatrix (mxN) constitute the OFF-DIAGONAL portion. 136867be906fSBarry Smith 136967be906fSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 137067be906fSBarry Smith 137167be906fSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 137267be906fSBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 137367be906fSBarry Smith You can also run with the option -info and look for messages with the string 137467be906fSBarry Smith malloc in them to see if additional memory allocation was needed. 137567be906fSBarry Smith 137694764886SPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreateSELL()`, 137711a5261eSBarry Smith `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`, `MATSELL` 1378d4002b98SHong Zhang @*/ 1379d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISELLSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 1380d71ae5a4SJacob Faibussowitsch { 1381d4002b98SHong Zhang PetscFunctionBegin; 1382d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1383d4002b98SHong Zhang PetscValidType(B, 1); 1384cac4c232SBarry Smith PetscTryMethod(B, "MatMPISELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 13853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1386d4002b98SHong Zhang } 1387d4002b98SHong Zhang 1388ed73aabaSBarry Smith /*MC 1389ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1390ed73aabaSBarry Smith based on the sliced Ellpack format 1391ed73aabaSBarry Smith 139227430b45SBarry Smith Options Database Key: 139320f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 1394ed73aabaSBarry Smith 1395ed73aabaSBarry Smith Level: beginner 1396ed73aabaSBarry Smith 139794764886SPierre Jolivet .seealso: `Mat`, `MatCreateSELL()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 1398ed73aabaSBarry Smith M*/ 1399ed73aabaSBarry Smith 1400d4002b98SHong Zhang /*@C 140111a5261eSBarry Smith MatCreateSELL - Creates a sparse parallel matrix in `MATSELL` format. 1402d4002b98SHong Zhang 1403d083f849SBarry Smith Collective 1404d4002b98SHong Zhang 1405d4002b98SHong Zhang Input Parameters: 1406d4002b98SHong Zhang + comm - MPI communicator 140711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 1408d4002b98SHong Zhang This value should be the same as the local size used in creating the 1409d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1410d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 141120f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 141220f4b53cSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 141320f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 141420f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 1415d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1416d4002b98SHong Zhang (same value is used for all local rows) 1417d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1418d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 141920f4b53cSBarry Smith or `NULL`, if d_rlenmax is used to specify the nonzero structure. 142020f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 1421d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1422d4002b98SHong Zhang submatrix (same value is used for all local rows). 1423d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1424d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 142520f4b53cSBarry Smith each row) or `NULL`, if `o_rlenmax` is used to specify the nonzero 1426d4002b98SHong Zhang structure. The size of this array is equal to the number 142720f4b53cSBarry Smith of local rows, i.e `m`. 1428d4002b98SHong Zhang 1429d4002b98SHong Zhang Output Parameter: 1430d4002b98SHong Zhang . A - the matrix 1431d4002b98SHong Zhang 143227430b45SBarry Smith Options Database Key: 1433fe59aa6dSJacob Faibussowitsch . -mat_sell_oneindex - Internally use indexing starting at 1 143427430b45SBarry Smith rather than 0. When calling `MatSetValues()`, 143527430b45SBarry Smith the user still MUST index entries starting at 0! 143627430b45SBarry Smith 143727430b45SBarry Smith Example: 143827430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 143927430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 144027430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 144127430b45SBarry Smith as follows 144227430b45SBarry Smith 144327430b45SBarry Smith .vb 144427430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 144527430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 144627430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 144727430b45SBarry Smith ------------------------------------- 144827430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 144927430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 145027430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 145127430b45SBarry Smith ------------------------------------- 145227430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 145327430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 145427430b45SBarry Smith .ve 145527430b45SBarry Smith 145620f4b53cSBarry Smith This can be represented as a collection of submatrices as 145727430b45SBarry Smith .vb 145827430b45SBarry Smith A B C 145927430b45SBarry Smith D E F 146027430b45SBarry Smith G H I 146127430b45SBarry Smith .ve 146227430b45SBarry Smith 146327430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 146427430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 146527430b45SBarry Smith 146627430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 146727430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 146827430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 146927430b45SBarry Smith 147027430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 147127430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 147227430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 147327430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 147427430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 1475*5163b989SNuno Nobre matrix, and [DF] as another `MATSEQSELL` matrix. 147627430b45SBarry Smith 147727430b45SBarry Smith When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 1478*5163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and o_rlenmax 1479*5163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 1480*5163b989SNuno Nobre One way to choose `d_rlenmax` and `o_rlenmax` is to use the maximum number of nonzeros over 1481*5163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 148220f4b53cSBarry Smith In this case, the values of d_rlenmax,o_rlenmax are 148327430b45SBarry Smith .vb 148420f4b53cSBarry Smith proc0 - d_rlenmax = 2, o_rlenmax = 2 148520f4b53cSBarry Smith proc1 - d_rlenmax = 3, o_rlenmax = 2 148620f4b53cSBarry Smith proc2 - d_rlenmax = 1, o_rlenmax = 4 148727430b45SBarry Smith .ve 148827430b45SBarry Smith We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 148927430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 149027430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 149127430b45SBarry Smith 34 values. 149227430b45SBarry Smith 149320f4b53cSBarry Smith When `d_rlen`, `o_rlen` parameters are specified, the storage is specified 149427430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 149520f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 149627430b45SBarry Smith .vb 149720f4b53cSBarry Smith proc0 - d_nnz = [2,2,2] and o_nnz = [2,2,2] 149820f4b53cSBarry Smith proc1 - d_nnz = [3,3,2] and o_nnz = [2,1,1] 149920f4b53cSBarry Smith proc2 - d_nnz = [1,1] and o_nnz = [4,4] 150027430b45SBarry Smith .ve 150127430b45SBarry Smith Here the space allocated is still 37 though there are 34 nonzeros because 150227430b45SBarry Smith the allocation is always done according to rlenmax. 150327430b45SBarry Smith 150427430b45SBarry Smith Level: intermediate 150527430b45SBarry Smith 150627430b45SBarry Smith Notes: 150711a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 1508f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 150911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 1510d4002b98SHong Zhang 1511d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1512d4002b98SHong Zhang 151320f4b53cSBarry Smith `m`, `n`, `M`, `N` parameters specify the size of the matrix, and its partitioning across 151420f4b53cSBarry Smith processors, while `d_rlenmax`, `d_rlen`, `o_rlenmax` , `o_rlen` parameters specify the approximate 1515d4002b98SHong Zhang storage requirements for this matrix. 1516d4002b98SHong Zhang 151711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 1518d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1519d4002b98SHong Zhang that argument. 1520d4002b98SHong Zhang 1521d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1522d4002b98SHong Zhang (possibly both). 1523d4002b98SHong Zhang 1524d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1525d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1526d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1527d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 152820f4b53cSBarry Smith values corresponding to [`m` x `N`] submatrix. 1529d4002b98SHong Zhang 1530d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1531d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 153220f4b53cSBarry Smith partition etc.. where n0,n1,n2... are the input parameter `n`. 1533d4002b98SHong Zhang 1534d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 153520f4b53cSBarry Smith is the submatrix corresponding to the rows and columns `m`, `n` 1536d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1537d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1538d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1539d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1540d4002b98SHong Zhang illustrates this concept. 1541d4002b98SHong Zhang 1542d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1543d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1544d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1545d4002b98SHong Zhang local matrix (a rectangular submatrix). 1546d4002b98SHong Zhang 154720f4b53cSBarry Smith If `o_rlen`, `d_rlen` are specified, then `o_rlenmax`, and `d_rlenmax` are ignored. 1548d4002b98SHong Zhang 1549d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 155011a5261eSBarry Smith type `MATSEQSELL` is returned. If a matrix of type `MATMPISELL` is desired for this 155127430b45SBarry Smith type of communicator, use the construction mechanism 1552d4002b98SHong Zhang .vb 155327430b45SBarry Smith MatCreate(...,&A); 155427430b45SBarry Smith MatSetType(A,MATMPISELL); 155527430b45SBarry Smith MatSetSizes(A, m,n,M,N); 155627430b45SBarry Smith MatMPISELLSetPreallocation(A,...); 1557d4002b98SHong Zhang .ve 1558d4002b98SHong Zhang 155994764886SPierre Jolivet .seealso: `Mat`, `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MATMPISELL` 1560d4002b98SHong Zhang @*/ 1561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[], Mat *A) 1562d71ae5a4SJacob Faibussowitsch { 1563d4002b98SHong Zhang PetscMPIInt size; 1564d4002b98SHong Zhang 1565d4002b98SHong Zhang PetscFunctionBegin; 15669566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 15679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 15689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1569d4002b98SHong Zhang if (size > 1) { 15709566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISELL)); 15719566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A, d_rlenmax, d_rlen, o_rlenmax, o_rlen)); 1572d4002b98SHong Zhang } else { 15739566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A, d_rlenmax, d_rlen)); 1575d4002b98SHong Zhang } 15763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1577d4002b98SHong Zhang } 1578d4002b98SHong Zhang 1579fa078d78SJacob Faibussowitsch /*@C 1580fa078d78SJacob Faibussowitsch MatMPISELLGetSeqSELL - Returns the local pieces of this distributed matrix 1581fa078d78SJacob Faibussowitsch 1582fa078d78SJacob Faibussowitsch Not Collective 1583fa078d78SJacob Faibussowitsch 1584fa078d78SJacob Faibussowitsch Input Parameter: 1585fa078d78SJacob Faibussowitsch . A - the `MATMPISELL` matrix 1586fa078d78SJacob Faibussowitsch 1587fa078d78SJacob Faibussowitsch Output Parameters: 1588fa078d78SJacob Faibussowitsch + Ad - The diagonal portion of `A` 15894cf0e950SBarry Smith . Ao - The off-diagonal portion of `A` 1590fa078d78SJacob Faibussowitsch - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 1591fa078d78SJacob Faibussowitsch 1592fa078d78SJacob Faibussowitsch Level: advanced 1593fa078d78SJacob Faibussowitsch 1594fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL` 1595fa078d78SJacob Faibussowitsch @*/ 1596fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetSeqSELL(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 1597fa078d78SJacob Faibussowitsch { 1598fa078d78SJacob Faibussowitsch Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1599fa078d78SJacob Faibussowitsch PetscBool flg; 1600fa078d78SJacob Faibussowitsch 1601fa078d78SJacob Faibussowitsch PetscFunctionBegin; 1602fa078d78SJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &flg)); 1603fa078d78SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPISELL matrix as input"); 1604fa078d78SJacob Faibussowitsch if (Ad) *Ad = a->A; 1605fa078d78SJacob Faibussowitsch if (Ao) *Ao = a->B; 1606fa078d78SJacob Faibussowitsch if (colmap) *colmap = a->garray; 1607fa078d78SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1608fa078d78SJacob Faibussowitsch } 1609fa078d78SJacob Faibussowitsch 1610fa078d78SJacob Faibussowitsch /*@C 1611fa078d78SJacob Faibussowitsch MatMPISELLGetLocalMatCondensed - Creates a `MATSEQSELL` matrix from an `MATMPISELL` matrix by 1612fa078d78SJacob Faibussowitsch taking all its local rows and NON-ZERO columns 1613fa078d78SJacob Faibussowitsch 1614fa078d78SJacob Faibussowitsch Not Collective 1615fa078d78SJacob Faibussowitsch 1616fa078d78SJacob Faibussowitsch Input Parameters: 1617fa078d78SJacob Faibussowitsch + A - the matrix 1618fa078d78SJacob Faibussowitsch . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 1619fa078d78SJacob Faibussowitsch . row - index sets of rows to extract (or `NULL`) 1620fa078d78SJacob Faibussowitsch - col - index sets of columns to extract (or `NULL`) 1621fa078d78SJacob Faibussowitsch 1622fa078d78SJacob Faibussowitsch Output Parameter: 1623fa078d78SJacob Faibussowitsch . A_loc - the local sequential matrix generated 1624fa078d78SJacob Faibussowitsch 1625fa078d78SJacob Faibussowitsch Level: advanced 1626fa078d78SJacob Faibussowitsch 1627fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL`, `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()` 1628fa078d78SJacob Faibussowitsch @*/ 1629fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 1630fa078d78SJacob Faibussowitsch { 1631fa078d78SJacob Faibussowitsch Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1632fa078d78SJacob Faibussowitsch PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 1633fa078d78SJacob Faibussowitsch IS isrowa, iscola; 1634fa078d78SJacob Faibussowitsch Mat *aloc; 1635fa078d78SJacob Faibussowitsch PetscBool match; 1636fa078d78SJacob Faibussowitsch 1637fa078d78SJacob Faibussowitsch PetscFunctionBegin; 1638fa078d78SJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &match)); 1639fa078d78SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPISELL matrix as input"); 1640fa078d78SJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 1641fa078d78SJacob Faibussowitsch if (!row) { 1642fa078d78SJacob Faibussowitsch start = A->rmap->rstart; 1643fa078d78SJacob Faibussowitsch end = A->rmap->rend; 1644fa078d78SJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 1645fa078d78SJacob Faibussowitsch } else { 1646fa078d78SJacob Faibussowitsch isrowa = *row; 1647fa078d78SJacob Faibussowitsch } 1648fa078d78SJacob Faibussowitsch if (!col) { 1649fa078d78SJacob Faibussowitsch start = A->cmap->rstart; 1650fa078d78SJacob Faibussowitsch cmap = a->garray; 1651fa078d78SJacob Faibussowitsch nzA = a->A->cmap->n; 1652fa078d78SJacob Faibussowitsch nzB = a->B->cmap->n; 1653fa078d78SJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 1654fa078d78SJacob Faibussowitsch ncols = 0; 1655fa078d78SJacob Faibussowitsch for (i = 0; i < nzB; i++) { 1656fa078d78SJacob Faibussowitsch if (cmap[i] < start) idx[ncols++] = cmap[i]; 1657fa078d78SJacob Faibussowitsch else break; 1658fa078d78SJacob Faibussowitsch } 1659fa078d78SJacob Faibussowitsch imark = i; 1660fa078d78SJacob Faibussowitsch for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 1661fa078d78SJacob Faibussowitsch for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 1662fa078d78SJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 1663fa078d78SJacob Faibussowitsch } else { 1664fa078d78SJacob Faibussowitsch iscola = *col; 1665fa078d78SJacob Faibussowitsch } 1666fa078d78SJacob Faibussowitsch if (scall != MAT_INITIAL_MATRIX) { 1667fa078d78SJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 1668fa078d78SJacob Faibussowitsch aloc[0] = *A_loc; 1669fa078d78SJacob Faibussowitsch } 1670fa078d78SJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 1671fa078d78SJacob Faibussowitsch *A_loc = aloc[0]; 1672fa078d78SJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1673fa078d78SJacob Faibussowitsch if (!row) PetscCall(ISDestroy(&isrowa)); 1674fa078d78SJacob Faibussowitsch if (!col) PetscCall(ISDestroy(&iscola)); 1675fa078d78SJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 1676fa078d78SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1677fa078d78SJacob Faibussowitsch } 1678fa078d78SJacob Faibussowitsch 1679d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1680d4002b98SHong Zhang 1681d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1682d71ae5a4SJacob Faibussowitsch { 1683d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1684d4002b98SHong Zhang Mat B; 1685d4002b98SHong Zhang Mat_MPIAIJ *b; 1686d4002b98SHong Zhang 1687d4002b98SHong Zhang PetscFunctionBegin; 168828b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1689d4002b98SHong Zhang 169094a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 169194a8b381SRichard Tran Mills B = *newmat; 169294a8b381SRichard Tran Mills } else { 16939566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 16949566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 16959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 16969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 16979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 16989566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 169994a8b381SRichard Tran Mills } 1700d4002b98SHong Zhang b = (Mat_MPIAIJ *)B->data; 170194a8b381SRichard Tran Mills 170294a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17039566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 17049566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 170594a8b381SRichard Tran Mills } else { 17069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17079566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17089566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 17099566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 17109566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 17119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 17129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 17139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 17149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 171594a8b381SRichard Tran Mills } 1716d4002b98SHong Zhang 1717d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17189566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1719d4002b98SHong Zhang } else { 1720d4002b98SHong Zhang *newmat = B; 1721d4002b98SHong Zhang } 17223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1723d4002b98SHong Zhang } 1724d4002b98SHong Zhang 1725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1726d71ae5a4SJacob Faibussowitsch { 1727d4002b98SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1728d4002b98SHong Zhang Mat B; 1729d4002b98SHong Zhang Mat_MPISELL *b; 1730d4002b98SHong Zhang 1731d4002b98SHong Zhang PetscFunctionBegin; 173228b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1733d4002b98SHong Zhang 173494a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 173594a8b381SRichard Tran Mills B = *newmat; 173694a8b381SRichard Tran Mills } else { 17372d1451d4SHong Zhang Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)a->A->data, *Ba = (Mat_SeqAIJ *)a->B->data; 17382d1451d4SHong Zhang PetscInt i, d_nz = 0, o_nz = 0, m = A->rmap->N, n = A->cmap->N, lm = A->rmap->n, ln = A->cmap->n; 17392d1451d4SHong Zhang PetscInt *d_nnz, *o_nnz; 17402d1451d4SHong Zhang PetscCall(PetscMalloc2(lm, &d_nnz, lm, &o_nnz)); 17412d1451d4SHong Zhang for (i = 0; i < lm; i++) { 17422d1451d4SHong Zhang d_nnz[i] = Aa->i[i + 1] - Aa->i[i]; 17432d1451d4SHong Zhang o_nnz[i] = Ba->i[i + 1] - Ba->i[i]; 17442d1451d4SHong Zhang if (d_nnz[i] > d_nz) d_nz = d_nnz[i]; 17452d1451d4SHong Zhang if (o_nnz[i] > o_nz) o_nz = o_nnz[i]; 17462d1451d4SHong Zhang } 17479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 17489566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISELL)); 17492d1451d4SHong Zhang PetscCall(MatSetSizes(B, lm, ln, m, n)); 17509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 17512d1451d4SHong Zhang PetscCall(MatSeqSELLSetPreallocation(B, d_nz, d_nnz)); 17522d1451d4SHong Zhang PetscCall(MatMPISELLSetPreallocation(B, d_nz, d_nnz, o_nz, o_nnz)); 17532d1451d4SHong Zhang PetscCall(PetscFree2(d_nnz, o_nnz)); 175494a8b381SRichard Tran Mills } 1755d4002b98SHong Zhang b = (Mat_MPISELL *)B->data; 175694a8b381SRichard Tran Mills 175794a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17589566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17599566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 176094a8b381SRichard Tran Mills } else { 17619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17639566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17649566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 17669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 17672d1451d4SHong Zhang PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 17682d1451d4SHong Zhang PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 176994a8b381SRichard Tran Mills } 1770d4002b98SHong Zhang 1771d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17729566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1773d4002b98SHong Zhang } else { 1774d4002b98SHong Zhang *newmat = B; 1775d4002b98SHong Zhang } 17763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1777d4002b98SHong Zhang } 1778d4002b98SHong Zhang 1779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISELL(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1780d71ae5a4SJacob Faibussowitsch { 1781d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 1782f4259b30SLisandro Dalcin Vec bb1 = NULL; 1783d4002b98SHong Zhang 1784d4002b98SHong Zhang PetscFunctionBegin; 1785d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 17873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1788d4002b98SHong Zhang } 1789d4002b98SHong Zhang 179048a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 1791d4002b98SHong Zhang 1792d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1793d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17949566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1795d4002b98SHong Zhang its--; 1796d4002b98SHong Zhang } 1797d4002b98SHong Zhang 1798d4002b98SHong Zhang while (its--) { 17999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 18009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1801d4002b98SHong Zhang 1802d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 18039566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 18049566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1805d4002b98SHong Zhang 1806d4002b98SHong Zhang /* local sweep */ 18079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 1808d4002b98SHong Zhang } 1809d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1810d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 18119566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1812d4002b98SHong Zhang its--; 1813d4002b98SHong Zhang } 1814d4002b98SHong Zhang while (its--) { 18159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 18169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1817d4002b98SHong Zhang 1818d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 18199566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 18209566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1821d4002b98SHong Zhang 1822d4002b98SHong Zhang /* local sweep */ 18239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 1824d4002b98SHong Zhang } 1825d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1826d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 18279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1828d4002b98SHong Zhang its--; 1829d4002b98SHong Zhang } 1830d4002b98SHong Zhang while (its--) { 18319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 18329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1833d4002b98SHong Zhang 1834d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 18359566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 18369566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1837d4002b98SHong Zhang 1838d4002b98SHong Zhang /* local sweep */ 18399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 1840d4002b98SHong Zhang } 1841d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1842d4002b98SHong Zhang 18439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1844d4002b98SHong Zhang 1845d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 18463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1847d4002b98SHong Zhang } 1848d4002b98SHong Zhang 1849b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1850b5917f1bSHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPISELL_MPISELLCUDA(Mat, MatType, MatReuse, Mat *); 1851b5917f1bSHong Zhang #endif 1852b5917f1bSHong Zhang 1853d4002b98SHong Zhang /*MC 1854d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1855d4002b98SHong Zhang 1856d4002b98SHong Zhang Options Database Keys: 185711a5261eSBarry Smith . -mat_type mpisell - sets the matrix type to `MATMPISELL` during a call to `MatSetFromOptions()` 1858d4002b98SHong Zhang 1859d4002b98SHong Zhang Level: beginner 1860d4002b98SHong Zhang 186167be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MATSEQSELL` `MatCreateSELL()` 1862d4002b98SHong Zhang M*/ 1863d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1864d71ae5a4SJacob Faibussowitsch { 1865d4002b98SHong Zhang Mat_MPISELL *b; 1866d4002b98SHong Zhang PetscMPIInt size; 1867d4002b98SHong Zhang 1868d4002b98SHong Zhang PetscFunctionBegin; 18699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 18704dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 1871d4002b98SHong Zhang B->data = (void *)b; 1872aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 1873d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1874d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1875d4002b98SHong Zhang b->size = size; 18769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 1877d4002b98SHong Zhang /* build cache for off array entries formed */ 18789566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 1879d4002b98SHong Zhang 1880d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1881f4259b30SLisandro Dalcin b->colmap = NULL; 1882f4259b30SLisandro Dalcin b->garray = NULL; 1883d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1884d4002b98SHong Zhang 1885d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1886d4002b98SHong Zhang b->lvec = NULL; 1887d4002b98SHong Zhang b->Mvctx = NULL; 1888d4002b98SHong Zhang 1889d4002b98SHong Zhang /* stuff for MatGetRow() */ 1890f4259b30SLisandro Dalcin b->rowindices = NULL; 1891f4259b30SLisandro Dalcin b->rowvalues = NULL; 1892d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1893d4002b98SHong Zhang 18949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISELL)); 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISELL)); 18969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPISELL)); 18979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISELLSetPreallocation_C", MatMPISELLSetPreallocation_MPISELL)); 18989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpiaij_C", MatConvert_MPISELL_MPIAIJ)); 1899b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1900b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpisellcuda_C", MatConvert_MPISELL_MPISELLCUDA)); 1901b5917f1bSHong Zhang #endif 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPISELL)); 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISELL)); 19043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1905d4002b98SHong Zhang } 1906