1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 1111a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 1211a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 1311a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 1820f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 2267be906fSBarry Smith .seealso: `Mat`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL` 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPISELL(Mat Y, Vec D, InsertMode is) 26d71ae5a4SJacob Faibussowitsch { 27d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A, D, is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 34d4002b98SHong Zhang } 353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43da81f932SPierre Jolivet has an order N integer array but is fast to access. 44d4002b98SHong Zhang */ 45d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d71ae5a4SJacob Faibussowitsch { 47d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 48d4002b98SHong Zhang PetscInt n = sell->B->cmap->n, i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 53eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &sell->colmap)); 54c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(sell->colmap, sell->garray[i] + 1, i + 1)); 55d4002b98SHong Zhang #else 569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &sell->colmap)); 57d4002b98SHong Zhang for (i = 0; i < n; i++) sell->colmap[sell->garray[i]] = i + 1; 58d4002b98SHong Zhang #endif 593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60d4002b98SHong Zhang } 61d4002b98SHong Zhang 62d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row, col, value, addv, orow, ocol) \ 63d4002b98SHong Zhang { \ 64d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 65d4002b98SHong Zhang else high1 = nrow1; \ 66d4002b98SHong Zhang lastcol1 = col; \ 67d4002b98SHong Zhang while (high1 - low1 > 5) { \ 68d4002b98SHong Zhang t = (low1 + high1) / 2; \ 694f8ff0b3SHong Zhang if (cp1[sliceheight * t] > col) high1 = t; \ 70d4002b98SHong Zhang else low1 = t; \ 71d4002b98SHong Zhang } \ 72d4002b98SHong Zhang for (_i = low1; _i < high1; _i++) { \ 734f8ff0b3SHong Zhang if (cp1[sliceheight * _i] > col) break; \ 744f8ff0b3SHong Zhang if (cp1[sliceheight * _i] == col) { \ 754f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp1[sliceheight * _i] += value; \ 764f8ff0b3SHong Zhang else vp1[sliceheight * _i] = value; \ 772d1451d4SHong Zhang inserted = PETSC_TRUE; \ 78d4002b98SHong Zhang goto a_noinsert; \ 79d4002b98SHong Zhang } \ 80d4002b98SHong Zhang } \ 819371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 829371c9d4SSatish Balay low1 = 0; \ 839371c9d4SSatish Balay high1 = nrow1; \ 849371c9d4SSatish Balay goto a_noinsert; \ 859371c9d4SSatish Balay } \ 869371c9d4SSatish Balay if (nonew == 1) { \ 879371c9d4SSatish Balay low1 = 0; \ 889371c9d4SSatish Balay high1 = nrow1; \ 899371c9d4SSatish Balay goto a_noinsert; \ 909371c9d4SSatish Balay } \ 9108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 9207e43b41SHong Zhang MatSeqXSELLReallocateSELL(A, am, 1, nrow1, a->sliidx, a->sliceheight, row / sliceheight, row, col, a->colidx, a->val, cp1, vp1, nonew, MatScalar); \ 93d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 94d4002b98SHong Zhang for (ii = nrow1 - 1; ii >= _i; ii--) { \ 954f8ff0b3SHong Zhang cp1[sliceheight * (ii + 1)] = cp1[sliceheight * ii]; \ 964f8ff0b3SHong Zhang vp1[sliceheight * (ii + 1)] = vp1[sliceheight * ii]; \ 97d4002b98SHong Zhang } \ 984f8ff0b3SHong Zhang cp1[sliceheight * _i] = col; \ 994f8ff0b3SHong Zhang vp1[sliceheight * _i] = value; \ 1009371c9d4SSatish Balay a->nz++; \ 1019371c9d4SSatish Balay nrow1++; \ 102d4002b98SHong Zhang a_noinsert:; \ 103d4002b98SHong Zhang a->rlen[row] = nrow1; \ 104d4002b98SHong Zhang } 105d4002b98SHong Zhang 106d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row, col, value, addv, orow, ocol) \ 107d4002b98SHong Zhang { \ 108d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 109d4002b98SHong Zhang else high2 = nrow2; \ 110d4002b98SHong Zhang lastcol2 = col; \ 111d4002b98SHong Zhang while (high2 - low2 > 5) { \ 112d4002b98SHong Zhang t = (low2 + high2) / 2; \ 1134f8ff0b3SHong Zhang if (cp2[sliceheight * t] > col) high2 = t; \ 114d4002b98SHong Zhang else low2 = t; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang for (_i = low2; _i < high2; _i++) { \ 1174f8ff0b3SHong Zhang if (cp2[sliceheight * _i] > col) break; \ 1184f8ff0b3SHong Zhang if (cp2[sliceheight * _i] == col) { \ 1194f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp2[sliceheight * _i] += value; \ 1204f8ff0b3SHong Zhang else vp2[sliceheight * _i] = value; \ 1212d1451d4SHong Zhang inserted = PETSC_TRUE; \ 122d4002b98SHong Zhang goto b_noinsert; \ 123d4002b98SHong Zhang } \ 124d4002b98SHong Zhang } \ 1259371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 1269371c9d4SSatish Balay low2 = 0; \ 1279371c9d4SSatish Balay high2 = nrow2; \ 1289371c9d4SSatish Balay goto b_noinsert; \ 1299371c9d4SSatish Balay } \ 1309371c9d4SSatish Balay if (nonew == 1) { \ 1319371c9d4SSatish Balay low2 = 0; \ 1329371c9d4SSatish Balay high2 = nrow2; \ 1339371c9d4SSatish Balay goto b_noinsert; \ 1349371c9d4SSatish Balay } \ 13508401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 13607e43b41SHong Zhang MatSeqXSELLReallocateSELL(B, bm, 1, nrow2, b->sliidx, b->sliceheight, row / sliceheight, row, col, b->colidx, b->val, cp2, vp2, nonew, MatScalar); \ 137d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 138d4002b98SHong Zhang for (ii = nrow2 - 1; ii >= _i; ii--) { \ 1394f8ff0b3SHong Zhang cp2[sliceheight * (ii + 1)] = cp2[sliceheight * ii]; \ 1404f8ff0b3SHong Zhang vp2[sliceheight * (ii + 1)] = vp2[sliceheight * ii]; \ 141d4002b98SHong Zhang } \ 1424f8ff0b3SHong Zhang cp2[sliceheight * _i] = col; \ 1434f8ff0b3SHong Zhang vp2[sliceheight * _i] = value; \ 1449371c9d4SSatish Balay b->nz++; \ 1459371c9d4SSatish Balay nrow2++; \ 146d4002b98SHong Zhang b_noinsert:; \ 147d4002b98SHong Zhang b->rlen[row] = nrow2; \ 148d4002b98SHong Zhang } 149d4002b98SHong Zhang 15043b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISELL(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 151d71ae5a4SJacob Faibussowitsch { 152d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 153d4002b98SHong Zhang PetscScalar value; 154d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, shift1, shift2; 155d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 156d4002b98SHong Zhang PetscBool roworiented = sell->roworiented; 157d4002b98SHong Zhang 158d4002b98SHong Zhang /* Some Variables required in the macro */ 159d4002b98SHong Zhang Mat A = sell->A; 160d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 161d4002b98SHong Zhang PetscBool ignorezeroentries = a->ignorezeroentries, found; 162d4002b98SHong Zhang Mat B = sell->B; 163d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 16407e43b41SHong Zhang PetscInt *cp1, *cp2, ii, _i, nrow1, nrow2, low1, high1, low2, high2, t, lastcol1, lastcol2, sliceheight = a->sliceheight; 165d4002b98SHong Zhang MatScalar *vp1, *vp2; 166d4002b98SHong Zhang 167d4002b98SHong Zhang PetscFunctionBegin; 168d4002b98SHong Zhang for (i = 0; i < m; i++) { 169d4002b98SHong Zhang if (im[i] < 0) continue; 1706bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 171d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 172d4002b98SHong Zhang row = im[i] - rstart; 173d4002b98SHong Zhang lastcol1 = -1; 17407e43b41SHong Zhang shift1 = a->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 1758e3a54c0SPierre Jolivet cp1 = PetscSafePointerPlusOffset(a->colidx, shift1); 1768e3a54c0SPierre Jolivet vp1 = PetscSafePointerPlusOffset(a->val, shift1); 177d4002b98SHong Zhang nrow1 = a->rlen[row]; 178d4002b98SHong Zhang low1 = 0; 179d4002b98SHong Zhang high1 = nrow1; 180d4002b98SHong Zhang lastcol2 = -1; 18107e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 1828e3a54c0SPierre Jolivet cp2 = PetscSafePointerPlusOffset(b->colidx, shift2); 1838e3a54c0SPierre Jolivet vp2 = PetscSafePointerPlusOffset(b->val, shift2); 184d4002b98SHong Zhang nrow2 = b->rlen[row]; 185d4002b98SHong Zhang low2 = 0; 186d4002b98SHong Zhang high2 = nrow2; 187d4002b98SHong Zhang 188d4002b98SHong Zhang for (j = 0; j < n; j++) { 189d4002b98SHong Zhang if (roworiented) value = v[i * n + j]; 190d4002b98SHong Zhang else value = v[i + j * m]; 191d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 192d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 193d4002b98SHong Zhang col = in[j] - cstart; 194d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A, row, col, value, addv, im[i], in[j], cp1, vp1, lastcol1, low1, high1); /* set one value */ 1952d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 1962d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) A->offloadmask = PETSC_OFFLOAD_CPU; 1972d1451d4SHong Zhang #endif 198f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 199f7d195e4SLawrence Mitchell continue; 200f7d195e4SLawrence Mitchell } else { 201f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 202d4002b98SHong Zhang if (mat->was_assembled) { 20348a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 204d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 205eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, in[j] + 1, 0, &col)); 206d4002b98SHong Zhang col--; 207d4002b98SHong Zhang #else 208d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 209d4002b98SHong Zhang #endif 210f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSELL *)sell->B->data)->nonew) { 2119566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 212d4002b98SHong Zhang col = in[j]; 213d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 214d4002b98SHong Zhang B = sell->B; 215d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 21607e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 217d4002b98SHong Zhang cp2 = b->colidx + shift2; 218d4002b98SHong Zhang vp2 = b->val + shift2; 219d4002b98SHong Zhang nrow2 = b->rlen[row]; 220d4002b98SHong Zhang low2 = 0; 221d4002b98SHong Zhang high2 = nrow2; 2222d1451d4SHong Zhang found = PETSC_FALSE; 223f7d195e4SLawrence Mitchell } else { 224f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 225f7d195e4SLawrence Mitchell } 226d4002b98SHong Zhang } else col = in[j]; 227d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B, row, col, value, addv, im[i], in[j], cp2, vp2, lastcol2, low2, high2); /* set one value */ 2282d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 2292d1451d4SHong Zhang if (B->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) B->offloadmask = PETSC_OFFLOAD_CPU; 2302d1451d4SHong Zhang #endif 231d4002b98SHong Zhang } 232d4002b98SHong Zhang } 233d4002b98SHong Zhang } else { 23428b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 235d4002b98SHong Zhang if (!sell->donotstash) { 236d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 237d4002b98SHong Zhang if (roworiented) { 2389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 239d4002b98SHong Zhang } else { 2409566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 241d4002b98SHong Zhang } 242d4002b98SHong Zhang } 243d4002b98SHong Zhang } 244d4002b98SHong Zhang } 2453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 246d4002b98SHong Zhang } 247d4002b98SHong Zhang 248ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISELL(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 249d71ae5a4SJacob Faibussowitsch { 250d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 251d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 252d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 253d4002b98SHong Zhang 254d4002b98SHong Zhang PetscFunctionBegin; 255d4002b98SHong Zhang for (i = 0; i < m; i++) { 25654c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 25754c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 258966bd95aSPierre Jolivet PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 259d4002b98SHong Zhang row = idxm[i] - rstart; 260d4002b98SHong Zhang for (j = 0; j < n; j++) { 26154c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 26254c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 263d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 264d4002b98SHong Zhang col = idxn[j] - cstart; 2659566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A, 1, &row, 1, &col, v + i * n + j)); 266d4002b98SHong Zhang } else { 26748a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 268d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 269eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, idxn[j] + 1, 0, &col)); 270d4002b98SHong Zhang col--; 271d4002b98SHong Zhang #else 272d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 273d4002b98SHong Zhang #endif 274966bd95aSPierre Jolivet if (col < 0 || sell->garray[col] != idxn[j]) *(v + i * n + j) = 0.0; 27548a46eb9SPierre Jolivet else PetscCall(MatGetValues(sell->B, 1, &row, 1, &col, v + i * n + j)); 276d4002b98SHong Zhang } 277d4002b98SHong Zhang } 278d4002b98SHong Zhang } 2793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280d4002b98SHong Zhang } 281d4002b98SHong Zhang 282ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat, MatAssemblyType mode) 283d71ae5a4SJacob Faibussowitsch { 284d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 285d4002b98SHong Zhang PetscInt nstash, reallocs; 286d4002b98SHong Zhang 287d4002b98SHong Zhang PetscFunctionBegin; 2883ba16761SJacob Faibussowitsch if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 289d4002b98SHong Zhang 2909566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 2919566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 2929566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 2933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 294d4002b98SHong Zhang } 295d4002b98SHong Zhang 296d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat, MatAssemblyType mode) 297d71ae5a4SJacob Faibussowitsch { 298d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 299d4002b98SHong Zhang PetscMPIInt n; 300d4002b98SHong Zhang PetscInt i, flg; 301d4002b98SHong Zhang PetscInt *row, *col; 302d4002b98SHong Zhang PetscScalar *val; 303c0edf612SJunchao Zhang PetscBool all_assembled; 304d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 305d4002b98SHong Zhang PetscFunctionBegin; 306d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 307d4002b98SHong Zhang while (1) { 3089566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 309d4002b98SHong Zhang if (!flg) break; 310d4002b98SHong Zhang 311d4002b98SHong Zhang for (i = 0; i < n; i++) { /* assemble one by one */ 3129566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat, 1, row + i, 1, col + i, val + i, mat->insertmode)); 313d4002b98SHong Zhang } 314d4002b98SHong Zhang } 3159566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 316d4002b98SHong Zhang } 3172d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3182d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) sell->A->offloadmask = PETSC_OFFLOAD_CPU; 3192d1451d4SHong Zhang #endif 3209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A, mode)); 3219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A, mode)); 322d4002b98SHong Zhang 323d4002b98SHong Zhang /* 324b638e6b4SJunchao Zhang determine if any process has disassembled, if so we must 3256aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. 326d4002b98SHong Zhang */ 327d4002b98SHong Zhang /* 328d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 329b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 330d4002b98SHong Zhang */ 331d4002b98SHong Zhang if (!((Mat_SeqSELL *)sell->B->data)->nonew) { 332*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 333c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISELL(mat)); 334d4002b98SHong Zhang } 33548a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISELL(mat)); 3362d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3372d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && sell->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) sell->B->offloadmask = PETSC_OFFLOAD_CPU; 3382d1451d4SHong Zhang #endif 3399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B, mode)); 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B, mode)); 3419566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 342f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 344d4002b98SHong Zhang 345d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 346f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL *)sell->A->data)->nonew) { 347d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 348462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 349d4002b98SHong Zhang } 3502d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3512d1451d4SHong Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 3522d1451d4SHong Zhang #endif 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354d4002b98SHong Zhang } 355d4002b98SHong Zhang 356ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISELL(Mat A) 357d71ae5a4SJacob Faibussowitsch { 358d4002b98SHong Zhang Mat_MPISELL *l = (Mat_MPISELL *)A->data; 359d4002b98SHong Zhang 360d4002b98SHong Zhang PetscFunctionBegin; 3619566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3629566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 3633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 364d4002b98SHong Zhang } 365d4002b98SHong Zhang 366ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPISELL(Mat A, Vec xx, Vec yy) 367d71ae5a4SJacob Faibussowitsch { 368d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 369d4002b98SHong Zhang PetscInt nt; 370d4002b98SHong Zhang 371d4002b98SHong Zhang PetscFunctionBegin; 3729566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 37308401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 3749566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3759566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 3769566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379d4002b98SHong Zhang } 380d4002b98SHong Zhang 381fa078d78SJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A, Vec bb, Vec xx) 382d71ae5a4SJacob Faibussowitsch { 383d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 384d4002b98SHong Zhang 385d4002b98SHong Zhang PetscFunctionBegin; 3869566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 3873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 388d4002b98SHong Zhang } 389d4002b98SHong Zhang 390ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 391d71ae5a4SJacob Faibussowitsch { 392d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 393d4002b98SHong Zhang 394d4002b98SHong Zhang PetscFunctionBegin; 3959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3969566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 3979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3989566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 400d4002b98SHong Zhang } 401d4002b98SHong Zhang 402ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPISELL(Mat A, Vec xx, Vec yy) 403d71ae5a4SJacob Faibussowitsch { 404d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 405d4002b98SHong Zhang 406d4002b98SHong Zhang PetscFunctionBegin; 407d4002b98SHong Zhang /* do nondiagonal part */ 4089566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 409d4002b98SHong Zhang /* do local part */ 4109566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 411a29b4eb7SJunchao Zhang /* add partial results together */ 4129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 415d4002b98SHong Zhang } 416d4002b98SHong Zhang 417ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPISELL(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 418d71ae5a4SJacob Faibussowitsch { 419d4002b98SHong Zhang MPI_Comm comm; 420d4002b98SHong Zhang Mat_MPISELL *Asell = (Mat_MPISELL *)Amat->data, *Bsell; 421d4002b98SHong Zhang Mat Adia = Asell->A, Bdia, Aoff, Boff, *Aoffs, *Boffs; 422d4002b98SHong Zhang IS Me, Notme; 423d4002b98SHong Zhang PetscInt M, N, first, last, *notme, i; 424d4002b98SHong Zhang PetscMPIInt size; 425d4002b98SHong Zhang 426d4002b98SHong Zhang PetscFunctionBegin; 427d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 4289371c9d4SSatish Balay Bsell = (Mat_MPISELL *)Bmat->data; 4299371c9d4SSatish Balay Bdia = Bsell->A; 4309566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, f)); 4313ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 4329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 4339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4343ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 435d4002b98SHong Zhang 436d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4379566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 4389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 4399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 440d4002b98SHong Zhang for (i = 0; i < first; i++) notme[i] = i; 441d4002b98SHong Zhang for (i = last; i < M; i++) notme[i - last + first] = i; 4429566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 4439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 4449566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 445d4002b98SHong Zhang Aoff = Aoffs[0]; 4469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 447d4002b98SHong Zhang Boff = Boffs[0]; 4489566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 4499566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 4509566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 4519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4539566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 4543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 455d4002b98SHong Zhang } 456d4002b98SHong Zhang 457ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 458d71ae5a4SJacob Faibussowitsch { 459d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 460d4002b98SHong Zhang 461d4002b98SHong Zhang PetscFunctionBegin; 462d4002b98SHong Zhang /* do nondiagonal part */ 4639566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 464d4002b98SHong Zhang /* do local part */ 4659566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 466e4a140f6SJunchao Zhang /* add partial results together */ 4679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4689566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470d4002b98SHong Zhang } 471d4002b98SHong Zhang 472d4002b98SHong Zhang /* 473d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 474d4002b98SHong Zhang diagonal block 475d4002b98SHong Zhang */ 476ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISELL(Mat A, Vec v) 477d71ae5a4SJacob Faibussowitsch { 478d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 479d4002b98SHong Zhang 480d4002b98SHong Zhang PetscFunctionBegin; 48108401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 482aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 4839566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 4843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 485d4002b98SHong Zhang } 486d4002b98SHong Zhang 487ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPISELL(Mat A, PetscScalar aa) 488d71ae5a4SJacob Faibussowitsch { 489d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 490d4002b98SHong Zhang 491d4002b98SHong Zhang PetscFunctionBegin; 4929566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 4939566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 4943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 495d4002b98SHong Zhang } 496d4002b98SHong Zhang 497d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPISELL(Mat mat) 498d71ae5a4SJacob Faibussowitsch { 499d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 500d4002b98SHong Zhang 501d4002b98SHong Zhang PetscFunctionBegin; 5023ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5039566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 5049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 5059566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 5069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 507d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 508eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&sell->colmap)); 509d4002b98SHong Zhang #else 5109566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 511d4002b98SHong Zhang #endif 5129566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 5139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 5149566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 5159566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 5169566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 5179566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 518d4002b98SHong Zhang 5199566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 5219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 5239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISELLSetPreallocation_C", NULL)); 5249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpiaij_C", NULL)); 525b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 526b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpisellcuda_C", NULL)); 527b5917f1bSHong Zhang #endif 5289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 5293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 530d4002b98SHong Zhang } 531d4002b98SHong Zhang 532d4002b98SHong Zhang #include <petscdraw.h> 533ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 534d71ae5a4SJacob Faibussowitsch { 535d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 536d4002b98SHong Zhang PetscMPIInt rank = sell->rank, size = sell->size; 5379f196a02SMartin Diehl PetscBool isdraw, isascii, isbinary; 538d4002b98SHong Zhang PetscViewer sviewer; 539d4002b98SHong Zhang PetscViewerFormat format; 540d4002b98SHong Zhang 541d4002b98SHong Zhang PetscFunctionBegin; 5429566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 5439f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 5449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 5459f196a02SMartin Diehl if (isascii) { 5469566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 547d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 548d4002b98SHong Zhang MatInfo info; 5496335e310SSatish Balay PetscInt *inodes; 550d4002b98SHong Zhang 5519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 5529566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 5539566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, NULL, &inodes, NULL)); 5549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 555d4002b98SHong Zhang if (!inodes) { 5569371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5579371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 558d4002b98SHong Zhang } else { 5599371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5609371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 561d4002b98SHong Zhang } 5629566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A, MAT_LOCAL, &info)); 5639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5649566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B, MAT_LOCAL, &info)); 5659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5669566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 5699566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx, viewer)); 5703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 571d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 572d4002b98SHong Zhang PetscInt inodecount, inodelimit, *inodes; 5739566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, &inodecount, &inodes, &inodelimit)); 574d4002b98SHong Zhang if (inodes) { 5759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 576d4002b98SHong Zhang } else { 5779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 578d4002b98SHong Zhang } 5793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 5813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 582d4002b98SHong Zhang } 583d4002b98SHong Zhang } else if (isbinary) { 584d4002b98SHong Zhang if (size == 1) { 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A, ((PetscObject)mat)->name)); 5869566063dSJacob Faibussowitsch PetscCall(MatView(sell->A, viewer)); 587d4002b98SHong Zhang } else { 5889566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 589d4002b98SHong Zhang } 5903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 591d4002b98SHong Zhang } else if (isdraw) { 592d4002b98SHong Zhang PetscDraw draw; 593d4002b98SHong Zhang PetscBool isnull; 5949566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 5959566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 5963ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 597d4002b98SHong Zhang } 598d4002b98SHong Zhang 599d4002b98SHong Zhang { 600d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 601d4002b98SHong Zhang Mat A; 602d4002b98SHong Zhang Mat_SeqSELL *Aloc; 603d4002b98SHong Zhang PetscInt M = mat->rmap->N, N = mat->cmap->N, *acolidx, row, col, i, j; 604d4002b98SHong Zhang MatScalar *aval; 605d4002b98SHong Zhang PetscBool isnonzero; 606d4002b98SHong Zhang 6079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 608dd400576SPatrick Sanan if (rank == 0) { 6099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 610d4002b98SHong Zhang } else { 6119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 612d4002b98SHong Zhang } 613d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 6149566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISELL)); 6159566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, 0, NULL, 0, NULL)); 6169566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 617d4002b98SHong Zhang 618d4002b98SHong Zhang /* copy over the A part */ 619d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->A->data; 6209371c9d4SSatish Balay acolidx = Aloc->colidx; 6219371c9d4SSatish Balay aval = Aloc->val; 622d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { /* loop over slices */ 623d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 62407e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 625d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 62607e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 627d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6289566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 629d4002b98SHong Zhang } 6309371c9d4SSatish Balay aval++; 6319371c9d4SSatish Balay acolidx++; 632d4002b98SHong Zhang } 633d4002b98SHong Zhang } 634d4002b98SHong Zhang 635d4002b98SHong Zhang /* copy over the B part */ 636d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->B->data; 6379371c9d4SSatish Balay acolidx = Aloc->colidx; 6389371c9d4SSatish Balay aval = Aloc->val; 639d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { 640d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 64107e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 642d4002b98SHong Zhang if (isnonzero) { 64307e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 644d4002b98SHong Zhang col = sell->garray[*acolidx]; 6459566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 646d4002b98SHong Zhang } 6479371c9d4SSatish Balay aval++; 6489371c9d4SSatish Balay acolidx++; 649d4002b98SHong Zhang } 650d4002b98SHong Zhang } 651d4002b98SHong Zhang 6529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 6539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 654d4002b98SHong Zhang /* 655d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 656d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 657d4002b98SHong Zhang */ 6589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 659dd400576SPatrick Sanan if (rank == 0) { 660f4f49eeaSPierre Jolivet PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL *)A->data)->A, ((PetscObject)mat)->name)); 661f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSELL(((Mat_MPISELL *)A->data)->A, sviewer)); 662d4002b98SHong Zhang } 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 6649566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 665d4002b98SHong Zhang } 6663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 667d4002b98SHong Zhang } 668d4002b98SHong Zhang 669ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL(Mat mat, PetscViewer viewer) 670d71ae5a4SJacob Faibussowitsch { 6719f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 672d4002b98SHong Zhang 673d4002b98SHong Zhang PetscFunctionBegin; 6749f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 6759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 6769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 6779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 6789f196a02SMartin Diehl if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat, viewer)); 6793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 680d4002b98SHong Zhang } 681d4002b98SHong Zhang 682ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPISELL(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 683d71ae5a4SJacob Faibussowitsch { 684d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 685d4002b98SHong Zhang 686d4002b98SHong Zhang PetscFunctionBegin; 6879566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B, NULL, nghosts)); 688d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 6893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 690d4002b98SHong Zhang } 691d4002b98SHong Zhang 692ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISELL(Mat matin, MatInfoType flag, MatInfo *info) 693d71ae5a4SJacob Faibussowitsch { 694d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 695d4002b98SHong Zhang Mat A = mat->A, B = mat->B; 6963966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 697d4002b98SHong Zhang 698d4002b98SHong Zhang PetscFunctionBegin; 699d4002b98SHong Zhang info->block_size = 1.0; 7009566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 701d4002b98SHong Zhang 7029371c9d4SSatish Balay isend[0] = info->nz_used; 7039371c9d4SSatish Balay isend[1] = info->nz_allocated; 7049371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7059371c9d4SSatish Balay isend[3] = info->memory; 7069371c9d4SSatish Balay isend[4] = info->mallocs; 707d4002b98SHong Zhang 7089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 709d4002b98SHong Zhang 7109371c9d4SSatish Balay isend[0] += info->nz_used; 7119371c9d4SSatish Balay isend[1] += info->nz_allocated; 7129371c9d4SSatish Balay isend[2] += info->nz_unneeded; 7139371c9d4SSatish Balay isend[3] += info->memory; 7149371c9d4SSatish Balay isend[4] += info->mallocs; 715d4002b98SHong Zhang if (flag == MAT_LOCAL) { 716d4002b98SHong Zhang info->nz_used = isend[0]; 717d4002b98SHong Zhang info->nz_allocated = isend[1]; 718d4002b98SHong Zhang info->nz_unneeded = isend[2]; 719d4002b98SHong Zhang info->memory = isend[3]; 720d4002b98SHong Zhang info->mallocs = isend[4]; 721d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 722462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 723d4002b98SHong Zhang 724d4002b98SHong Zhang info->nz_used = irecv[0]; 725d4002b98SHong Zhang info->nz_allocated = irecv[1]; 726d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 727d4002b98SHong Zhang info->memory = irecv[3]; 728d4002b98SHong Zhang info->mallocs = irecv[4]; 729d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 730462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 731d4002b98SHong Zhang 732d4002b98SHong Zhang info->nz_used = irecv[0]; 733d4002b98SHong Zhang info->nz_allocated = irecv[1]; 734d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 735d4002b98SHong Zhang info->memory = irecv[3]; 736d4002b98SHong Zhang info->mallocs = irecv[4]; 737d4002b98SHong Zhang } 738d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 739d4002b98SHong Zhang info->fill_ratio_needed = 0; 740d4002b98SHong Zhang info->factor_mallocs = 0; 7413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 742d4002b98SHong Zhang } 743d4002b98SHong Zhang 74443b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISELL(Mat A, MatOption op, PetscBool flg) 745d71ae5a4SJacob Faibussowitsch { 746d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 747d4002b98SHong Zhang 748d4002b98SHong Zhang PetscFunctionBegin; 749d4002b98SHong Zhang switch (op) { 750d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 751d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 752d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 753d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 754d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 755d4002b98SHong Zhang case MAT_USE_INODES: 756d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 757d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7589566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7599566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 760d4002b98SHong Zhang break; 761d4002b98SHong Zhang case MAT_ROW_ORIENTED: 762d4002b98SHong Zhang MatCheckPreallocated(A, 1); 763d4002b98SHong Zhang a->roworiented = flg; 764d4002b98SHong Zhang 7659566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7669566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 767d4002b98SHong Zhang break; 768d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 769d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 770d71ae5a4SJacob Faibussowitsch break; 771d4002b98SHong Zhang case MAT_SYMMETRIC: 772d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7739566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 774d4002b98SHong Zhang break; 775d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 776d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 778d4002b98SHong Zhang break; 779d4002b98SHong Zhang case MAT_HERMITIAN: 780d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 782d4002b98SHong Zhang break; 783d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 784d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 786d4002b98SHong Zhang break; 787b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 788b94d7dedSBarry Smith MatCheckPreallocated(A, 1); 789b94d7dedSBarry Smith PetscCall(MatSetOption(a->A, op, flg)); 790b94d7dedSBarry Smith break; 791d71ae5a4SJacob Faibussowitsch default: 792888c827cSStefano Zampini break; 793d4002b98SHong Zhang } 7943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 795d4002b98SHong Zhang } 796d4002b98SHong Zhang 797ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISELL(Mat mat, Vec ll, Vec rr) 798d71ae5a4SJacob Faibussowitsch { 799d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 800d4002b98SHong Zhang Mat a = sell->A, b = sell->B; 801d4002b98SHong Zhang PetscInt s1, s2, s3; 802d4002b98SHong Zhang 803d4002b98SHong Zhang PetscFunctionBegin; 8049566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 805d4002b98SHong Zhang if (rr) { 8069566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 80708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 808d4002b98SHong Zhang /* Overlap communication with computation. */ 8099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 810d4002b98SHong Zhang } 811d4002b98SHong Zhang if (ll) { 8129566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 81308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 814dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 815d4002b98SHong Zhang } 816d4002b98SHong Zhang /* scale the diagonal block */ 817dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 818d4002b98SHong Zhang 819d4002b98SHong Zhang if (rr) { 820d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 822dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, sell->lvec); 823d4002b98SHong Zhang } 8243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 825d4002b98SHong Zhang } 826d4002b98SHong Zhang 827ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 828d71ae5a4SJacob Faibussowitsch { 829d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 830d4002b98SHong Zhang 831d4002b98SHong Zhang PetscFunctionBegin; 8329566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 8333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 834d4002b98SHong Zhang } 835d4002b98SHong Zhang 836ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISELL(Mat A, Mat B, PetscBool *flag) 837d71ae5a4SJacob Faibussowitsch { 838d4002b98SHong Zhang Mat_MPISELL *matB = (Mat_MPISELL *)B->data, *matA = (Mat_MPISELL *)A->data; 839d4002b98SHong Zhang Mat a, b, c, d; 840d4002b98SHong Zhang PetscBool flg; 841d4002b98SHong Zhang 842d4002b98SHong Zhang PetscFunctionBegin; 8439371c9d4SSatish Balay a = matA->A; 8449371c9d4SSatish Balay b = matA->B; 8459371c9d4SSatish Balay c = matB->A; 8469371c9d4SSatish Balay d = matB->B; 847d4002b98SHong Zhang 8489566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 84948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 850*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 8513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 852d4002b98SHong Zhang } 853d4002b98SHong Zhang 854ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISELL(Mat A, Mat B, MatStructure str) 855d71ae5a4SJacob Faibussowitsch { 856d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 857d4002b98SHong Zhang Mat_MPISELL *b = (Mat_MPISELL *)B->data; 858d4002b98SHong Zhang 859d4002b98SHong Zhang PetscFunctionBegin; 860d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 861d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 862d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 863d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 864d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 865d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 866d4002b98SHong Zhang then copying the submatrices */ 8679566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 868d4002b98SHong Zhang } else { 8699566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 8709566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 871d4002b98SHong Zhang } 8723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 873d4002b98SHong Zhang } 874d4002b98SHong Zhang 875ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPISELL(Mat A) 876d71ae5a4SJacob Faibussowitsch { 877d4002b98SHong Zhang PetscFunctionBegin; 8789566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 8793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 880d4002b98SHong Zhang } 881d4002b98SHong Zhang 882ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISELL(Mat mat) 883d71ae5a4SJacob Faibussowitsch { 8845f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8855f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 886d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 887d4002b98SHong Zhang 8889566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8899566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8905f80ce2aSJacob Faibussowitsch } 8913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 892d4002b98SHong Zhang } 893d4002b98SHong Zhang 894ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISELL(Mat A) 895d71ae5a4SJacob Faibussowitsch { 896d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 897d4002b98SHong Zhang 898d4002b98SHong Zhang PetscFunctionBegin; 8999566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 9009566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 9013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 902d4002b98SHong Zhang } 903d4002b98SHong Zhang 904ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 905d71ae5a4SJacob Faibussowitsch { 906d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 907d4002b98SHong Zhang 908d4002b98SHong Zhang PetscFunctionBegin; 9099566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 9109566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912d4002b98SHong Zhang } 913d4002b98SHong Zhang 914ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A, const PetscScalar **values) 915d71ae5a4SJacob Faibussowitsch { 916d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 917d4002b98SHong Zhang 918d4002b98SHong Zhang PetscFunctionBegin; 9199566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 920d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 9213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 922d4002b98SHong Zhang } 923d4002b98SHong Zhang 924d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPISELL(Mat x, PetscRandom rctx) 925d71ae5a4SJacob Faibussowitsch { 926d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)x->data; 927d4002b98SHong Zhang 928d4002b98SHong Zhang PetscFunctionBegin; 9299566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A, rctx)); 9309566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B, rctx)); 9319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 9329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 9333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 934d4002b98SHong Zhang } 935d4002b98SHong Zhang 936ce78bad3SBarry Smith static PetscErrorCode MatSetFromOptions_MPISELL(Mat A, PetscOptionItems PetscOptionsObject) 937d71ae5a4SJacob Faibussowitsch { 938d4002b98SHong Zhang PetscFunctionBegin; 939d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPISELL options"); 940d0609cedSBarry Smith PetscOptionsHeadEnd(); 9413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 942d4002b98SHong Zhang } 943d4002b98SHong Zhang 944ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPISELL(Mat Y, PetscScalar a) 945d71ae5a4SJacob Faibussowitsch { 946d4002b98SHong Zhang Mat_MPISELL *msell = (Mat_MPISELL *)Y->data; 947d4002b98SHong Zhang Mat_SeqSELL *sell = (Mat_SeqSELL *)msell->A->data; 948d4002b98SHong Zhang 949d4002b98SHong Zhang PetscFunctionBegin; 950d4002b98SHong Zhang if (!Y->preallocated) { 9519566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y, 1, NULL, 0, NULL)); 952d4002b98SHong Zhang } else if (!sell->nz) { 953d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9549566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A, 1, NULL)); 955d4002b98SHong Zhang sell->nonew = nonew; 956d4002b98SHong Zhang } 9579566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 9583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 959d4002b98SHong Zhang } 960d4002b98SHong Zhang 961ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISELL(Mat A, PetscBool *missing, PetscInt *d) 962d71ae5a4SJacob Faibussowitsch { 963d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 964d4002b98SHong Zhang 965d4002b98SHong Zhang PetscFunctionBegin; 96608401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 9679566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 968d4002b98SHong Zhang if (d) { 969d4002b98SHong Zhang PetscInt rstart; 9709566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 971d4002b98SHong Zhang *d += rstart; 972d4002b98SHong Zhang } 9733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 974d4002b98SHong Zhang } 975d4002b98SHong Zhang 976ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A, Mat *a) 977d71ae5a4SJacob Faibussowitsch { 978d4002b98SHong Zhang PetscFunctionBegin; 979d4002b98SHong Zhang *a = ((Mat_MPISELL *)A->data)->A; 9803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 981d4002b98SHong Zhang } 982d4002b98SHong Zhang 98343b34f9dSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISELL(Mat mat) 98443b34f9dSJacob Faibussowitsch { 98543b34f9dSJacob Faibussowitsch Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 98643b34f9dSJacob Faibussowitsch 98743b34f9dSJacob Faibussowitsch PetscFunctionBegin; 98843b34f9dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 98943b34f9dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 99043b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 99143b34f9dSJacob Faibussowitsch } 99243b34f9dSJacob Faibussowitsch 99343b34f9dSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 99443b34f9dSJacob Faibussowitsch { 99543b34f9dSJacob Faibussowitsch Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 99643b34f9dSJacob Faibussowitsch 99743b34f9dSJacob Faibussowitsch PetscFunctionBegin; 99843b34f9dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 99943b34f9dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 100043b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100143b34f9dSJacob Faibussowitsch } 100243b34f9dSJacob Faibussowitsch 100343b34f9dSJacob Faibussowitsch static PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[]) 100443b34f9dSJacob Faibussowitsch { 100543b34f9dSJacob Faibussowitsch Mat_MPISELL *b; 100643b34f9dSJacob Faibussowitsch 100743b34f9dSJacob Faibussowitsch PetscFunctionBegin; 100843b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 100943b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 101043b34f9dSJacob Faibussowitsch b = (Mat_MPISELL *)B->data; 101143b34f9dSJacob Faibussowitsch 101243b34f9dSJacob Faibussowitsch if (!B->preallocated) { 101343b34f9dSJacob Faibussowitsch /* Explicitly create 2 MATSEQSELL matrices. */ 101443b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 101543b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 101643b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 101743b34f9dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSELL)); 101843b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 101943b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, B->cmap->N, B->rmap->n, B->cmap->N)); 102043b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 102143b34f9dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQSELL)); 102243b34f9dSJacob Faibussowitsch } 102343b34f9dSJacob Faibussowitsch 102443b34f9dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A, d_rlenmax, d_rlen)); 102543b34f9dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B, o_rlenmax, o_rlen)); 102643b34f9dSJacob Faibussowitsch B->preallocated = PETSC_TRUE; 102743b34f9dSJacob Faibussowitsch B->was_assembled = PETSC_FALSE; 102843b34f9dSJacob Faibussowitsch /* 102943b34f9dSJacob Faibussowitsch critical for MatAssemblyEnd to work. 103043b34f9dSJacob Faibussowitsch MatAssemblyBegin checks it to set up was_assembled 103143b34f9dSJacob Faibussowitsch and MatAssemblyEnd checks was_assembled to determine whether to build garray 103243b34f9dSJacob Faibussowitsch */ 103343b34f9dSJacob Faibussowitsch B->assembled = PETSC_FALSE; 103443b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103543b34f9dSJacob Faibussowitsch } 103643b34f9dSJacob Faibussowitsch 103743b34f9dSJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISELL(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 103843b34f9dSJacob Faibussowitsch { 103943b34f9dSJacob Faibussowitsch Mat mat; 104043b34f9dSJacob Faibussowitsch Mat_MPISELL *a, *oldmat = (Mat_MPISELL *)matin->data; 104143b34f9dSJacob Faibussowitsch 104243b34f9dSJacob Faibussowitsch PetscFunctionBegin; 104343b34f9dSJacob Faibussowitsch *newmat = NULL; 104443b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 104543b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 104643b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 104743b34f9dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 104843b34f9dSJacob Faibussowitsch a = (Mat_MPISELL *)mat->data; 104943b34f9dSJacob Faibussowitsch 105043b34f9dSJacob Faibussowitsch mat->factortype = matin->factortype; 105143b34f9dSJacob Faibussowitsch mat->assembled = PETSC_TRUE; 105243b34f9dSJacob Faibussowitsch mat->insertmode = NOT_SET_VALUES; 105343b34f9dSJacob Faibussowitsch mat->preallocated = PETSC_TRUE; 105443b34f9dSJacob Faibussowitsch 105543b34f9dSJacob Faibussowitsch a->size = oldmat->size; 105643b34f9dSJacob Faibussowitsch a->rank = oldmat->rank; 105743b34f9dSJacob Faibussowitsch a->donotstash = oldmat->donotstash; 105843b34f9dSJacob Faibussowitsch a->roworiented = oldmat->roworiented; 105943b34f9dSJacob Faibussowitsch a->rowindices = NULL; 106043b34f9dSJacob Faibussowitsch a->rowvalues = NULL; 106143b34f9dSJacob Faibussowitsch a->getrowactive = PETSC_FALSE; 106243b34f9dSJacob Faibussowitsch 106343b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 106443b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 106543b34f9dSJacob Faibussowitsch 106643b34f9dSJacob Faibussowitsch if (oldmat->colmap) { 106743b34f9dSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 106843b34f9dSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 106943b34f9dSJacob Faibussowitsch #else 107043b34f9dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 107143b34f9dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 107243b34f9dSJacob Faibussowitsch #endif 107343b34f9dSJacob Faibussowitsch } else a->colmap = NULL; 107443b34f9dSJacob Faibussowitsch if (oldmat->garray) { 107543b34f9dSJacob Faibussowitsch PetscInt len; 107643b34f9dSJacob Faibussowitsch len = oldmat->B->cmap->n; 107743b34f9dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 107843b34f9dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 107943b34f9dSJacob Faibussowitsch } else a->garray = NULL; 108043b34f9dSJacob Faibussowitsch 108143b34f9dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 108243b34f9dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 108343b34f9dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 108443b34f9dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 108543b34f9dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 108643b34f9dSJacob Faibussowitsch *newmat = mat; 108743b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 108843b34f9dSJacob Faibussowitsch } 108943b34f9dSJacob Faibussowitsch 109043b34f9dSJacob Faibussowitsch static const struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 1091f4259b30SLisandro Dalcin NULL, 1092f4259b30SLisandro Dalcin NULL, 1093d4002b98SHong Zhang MatMult_MPISELL, 1094d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 1095d4002b98SHong Zhang MatMultTranspose_MPISELL, 1096d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 1097f4259b30SLisandro Dalcin NULL, 1098f4259b30SLisandro Dalcin NULL, 1099f4259b30SLisandro Dalcin NULL, 1100f4259b30SLisandro Dalcin /*10*/ NULL, 1101f4259b30SLisandro Dalcin NULL, 1102f4259b30SLisandro Dalcin NULL, 1103d4002b98SHong Zhang MatSOR_MPISELL, 1104f4259b30SLisandro Dalcin NULL, 1105d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 1106d4002b98SHong Zhang MatEqual_MPISELL, 1107d4002b98SHong Zhang MatGetDiagonal_MPISELL, 1108d4002b98SHong Zhang MatDiagonalScale_MPISELL, 1109f4259b30SLisandro Dalcin NULL, 1110d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 1111d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 1112d4002b98SHong Zhang MatSetOption_MPISELL, 1113d4002b98SHong Zhang MatZeroEntries_MPISELL, 1114f4259b30SLisandro Dalcin /*24*/ NULL, 1115f4259b30SLisandro Dalcin NULL, 1116f4259b30SLisandro Dalcin NULL, 1117f4259b30SLisandro Dalcin NULL, 1118f4259b30SLisandro Dalcin NULL, 1119d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 1120f4259b30SLisandro Dalcin NULL, 1121f4259b30SLisandro Dalcin NULL, 1122d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1123f4259b30SLisandro Dalcin NULL, 1124d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin NULL, 1127f4259b30SLisandro Dalcin NULL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin /*39*/ NULL, 1130f4259b30SLisandro Dalcin NULL, 1131f4259b30SLisandro Dalcin NULL, 1132d4002b98SHong Zhang MatGetValues_MPISELL, 1133d4002b98SHong Zhang MatCopy_MPISELL, 1134f4259b30SLisandro Dalcin /*44*/ NULL, 1135d4002b98SHong Zhang MatScale_MPISELL, 1136d4002b98SHong Zhang MatShift_MPISELL, 1137d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1138f4259b30SLisandro Dalcin NULL, 1139d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1140f4259b30SLisandro Dalcin NULL, 1141f4259b30SLisandro Dalcin NULL, 1142f4259b30SLisandro Dalcin NULL, 1143f4259b30SLisandro Dalcin NULL, 1144d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1145f4259b30SLisandro Dalcin NULL, 1146d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1147f4259b30SLisandro Dalcin NULL, 1148f4259b30SLisandro Dalcin NULL, 1149f4259b30SLisandro Dalcin /*59*/ NULL, 1150d4002b98SHong Zhang MatDestroy_MPISELL, 1151d4002b98SHong Zhang MatView_MPISELL, 1152f4259b30SLisandro Dalcin NULL, 1153f4259b30SLisandro Dalcin NULL, 1154f4259b30SLisandro Dalcin /*64*/ NULL, 1155f4259b30SLisandro Dalcin NULL, 1156f4259b30SLisandro Dalcin NULL, 1157f4259b30SLisandro Dalcin NULL, 1158f4259b30SLisandro Dalcin NULL, 1159f4259b30SLisandro Dalcin /*69*/ NULL, 1160f4259b30SLisandro Dalcin NULL, 1161f4259b30SLisandro Dalcin NULL, 11628bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, /* reuse AIJ function */ 1163d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1164f4259b30SLisandro Dalcin NULL, 11658bb0f5c6SPierre Jolivet /*75*/ NULL, 11668bb0f5c6SPierre Jolivet NULL, 11678bb0f5c6SPierre Jolivet NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin NULL, 1170f4259b30SLisandro Dalcin /*80*/ NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin NULL, 1173f4259b30SLisandro Dalcin /*83*/ NULL, 1174f4259b30SLisandro Dalcin NULL, 1175f4259b30SLisandro Dalcin NULL, 1176f4259b30SLisandro Dalcin NULL, 1177f4259b30SLisandro Dalcin NULL, 1178f4259b30SLisandro Dalcin NULL, 1179f4259b30SLisandro Dalcin /*89*/ NULL, 1180f4259b30SLisandro Dalcin NULL, 1181f4259b30SLisandro Dalcin NULL, 1182f4259b30SLisandro Dalcin NULL, 11838bb0f5c6SPierre Jolivet MatConjugate_MPISELL, 1184f4259b30SLisandro Dalcin /*94*/ NULL, 1185f4259b30SLisandro Dalcin NULL, 11868bb0f5c6SPierre Jolivet MatRealPart_MPISELL, 11878bb0f5c6SPierre Jolivet MatImaginaryPart_MPISELL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin /*99*/ NULL, 1190f4259b30SLisandro Dalcin NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin NULL, 1193f4259b30SLisandro Dalcin NULL, 11948bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPISELL, 1195f4259b30SLisandro Dalcin NULL, 1196f4259b30SLisandro Dalcin NULL, 1197d4002b98SHong Zhang MatGetGhosts_MPISELL, 1198f4259b30SLisandro Dalcin NULL, 11998bb0f5c6SPierre Jolivet /*109*/ NULL, 12008bb0f5c6SPierre Jolivet MatMultDiagonalBlock_MPISELL, 1201f4259b30SLisandro Dalcin NULL, 12028bb0f5c6SPierre Jolivet NULL, 12038bb0f5c6SPierre Jolivet NULL, 12048bb0f5c6SPierre Jolivet /*114*/ NULL, 12058bb0f5c6SPierre Jolivet NULL, 12068bb0f5c6SPierre Jolivet NULL, 12078bb0f5c6SPierre Jolivet MatInvertBlockDiagonal_MPISELL, 12088bb0f5c6SPierre Jolivet NULL, 12098bb0f5c6SPierre Jolivet /*119*/ NULL, 1210f4259b30SLisandro Dalcin NULL, 1211f4259b30SLisandro Dalcin NULL, 1212f4259b30SLisandro Dalcin NULL, 1213f4259b30SLisandro Dalcin NULL, 1214f4259b30SLisandro Dalcin /*124*/ NULL, 1215f4259b30SLisandro Dalcin NULL, 1216f4259b30SLisandro Dalcin NULL, 1217f4259b30SLisandro Dalcin NULL, 12188bb0f5c6SPierre Jolivet NULL, 12198bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 1220f4259b30SLisandro Dalcin NULL, 1221f4259b30SLisandro Dalcin NULL, 1222f4259b30SLisandro Dalcin NULL, 1223f4259b30SLisandro Dalcin NULL, 1224f4259b30SLisandro Dalcin /*134*/ NULL, 1225f4259b30SLisandro Dalcin NULL, 1226f4259b30SLisandro Dalcin NULL, 1227f4259b30SLisandro Dalcin NULL, 1228f4259b30SLisandro Dalcin NULL, 1229f4259b30SLisandro Dalcin /*139*/ NULL, 1230f4259b30SLisandro Dalcin NULL, 1231f4259b30SLisandro Dalcin NULL, 123203db1824SAlex Lindsay NULL, 1233dec0b466SHong Zhang NULL}; 1234d4002b98SHong Zhang 1235d4002b98SHong Zhang /*@C 123611a5261eSBarry Smith MatMPISELLSetPreallocation - Preallocates memory for a `MATMPISELL` sparse parallel matrix in sell format. 1237d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 123867be906fSBarry Smith setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 1239d4002b98SHong Zhang 1240d083f849SBarry Smith Collective 1241d4002b98SHong Zhang 1242d4002b98SHong Zhang Input Parameters: 1243d4002b98SHong Zhang + B - the matrix 1244d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1245d4002b98SHong Zhang (same value is used for all local rows) 1246d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1247d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 124867be906fSBarry Smith or NULL (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 1249d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1250d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1251d4002b98SHong Zhang the diagonal entry even if it is zero. 1252d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1253d4002b98SHong Zhang submatrix (same value is used for all local rows). 1254d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1255d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 125667be906fSBarry Smith each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 1257d4002b98SHong Zhang structure. The size of this array is equal to the number 1258d4002b98SHong Zhang of local rows, i.e 'm'. 1259d4002b98SHong Zhang 1260d4002b98SHong Zhang Example usage: 1261d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1262d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1263d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 126467be906fSBarry Smith as follows 1265d4002b98SHong Zhang 1266d4002b98SHong Zhang .vb 1267d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1268d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1269d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1270d4002b98SHong Zhang ------------------------------------- 1271d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1272d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1273d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1274d4002b98SHong Zhang ------------------------------------- 1275d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1276d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1277d4002b98SHong Zhang .ve 1278d4002b98SHong Zhang 127927430b45SBarry Smith This can be represented as a collection of submatrices as 1280d4002b98SHong Zhang 1281d4002b98SHong Zhang .vb 1282d4002b98SHong Zhang A B C 1283d4002b98SHong Zhang D E F 1284d4002b98SHong Zhang G H I 1285d4002b98SHong Zhang .ve 1286d4002b98SHong Zhang 1287d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1288d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1289d4002b98SHong Zhang 1290d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1291d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1292d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1293d4002b98SHong Zhang 1294d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1295d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1296d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1297d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 129827430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 12995163b989SNuno Nobre matrix, and [DF] as another SeqSELL matrix. 1300d4002b98SHong Zhang 130167be906fSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 13025163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and o_nz 13035163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 13045163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 13055163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 130627430b45SBarry Smith In this case, the values of d_nz,o_nz are 1307d4002b98SHong Zhang .vb 130827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 130927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 131027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 1311d4002b98SHong Zhang .ve 1312d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1313d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1314d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1315d4002b98SHong Zhang 34 values. 1316d4002b98SHong Zhang 131767be906fSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 1318a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 131927430b45SBarry Smith In the above case the values for d_nnz,o_nnz are 1320d4002b98SHong Zhang .vb 132127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 132227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 132327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 1324d4002b98SHong Zhang .ve 1325d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1326d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1327d4002b98SHong Zhang 1328d4002b98SHong Zhang Level: intermediate 1329d4002b98SHong Zhang 133067be906fSBarry Smith Notes: 133167be906fSBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 133267be906fSBarry Smith 133367be906fSBarry Smith The stored row and column indices begin with zero. 133467be906fSBarry Smith 133567be906fSBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 133667be906fSBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 133767be906fSBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 133867be906fSBarry Smith 133967be906fSBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 134067be906fSBarry Smith as the submatrix which is obtained by extraction the part corresponding to 134167be906fSBarry Smith the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 134267be906fSBarry Smith first row that belongs to the processor, r2 is the last row belonging to 134367be906fSBarry Smith the this processor, and c1-c2 is range of indices of the local part of a 134467be906fSBarry Smith vector suitable for applying the matrix to. This is an mxn matrix. In the 134567be906fSBarry Smith common case of a square matrix, the row and column ranges are the same and 134667be906fSBarry Smith the DIAGONAL part is also square. The remaining portion of the local 134767be906fSBarry Smith submatrix (mxN) constitute the OFF-DIAGONAL portion. 134867be906fSBarry Smith 134967be906fSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 135067be906fSBarry Smith 135167be906fSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 135267be906fSBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 135367be906fSBarry Smith You can also run with the option -info and look for messages with the string 135467be906fSBarry Smith malloc in them to see if additional memory allocation was needed. 135567be906fSBarry Smith 135694764886SPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreateSELL()`, 135711a5261eSBarry Smith `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`, `MATSELL` 1358d4002b98SHong Zhang @*/ 1359d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISELLSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 1360d71ae5a4SJacob Faibussowitsch { 1361d4002b98SHong Zhang PetscFunctionBegin; 1362d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1363d4002b98SHong Zhang PetscValidType(B, 1); 1364cac4c232SBarry Smith PetscTryMethod(B, "MatMPISELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 13653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1366d4002b98SHong Zhang } 1367d4002b98SHong Zhang 1368ed73aabaSBarry Smith /*MC 1369ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1370ed73aabaSBarry Smith based on the sliced Ellpack format 1371ed73aabaSBarry Smith 137227430b45SBarry Smith Options Database Key: 137320f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 1374ed73aabaSBarry Smith 1375ed73aabaSBarry Smith Level: beginner 1376ed73aabaSBarry Smith 137794764886SPierre Jolivet .seealso: `Mat`, `MatCreateSELL()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 1378ed73aabaSBarry Smith M*/ 1379ed73aabaSBarry Smith 1380d4002b98SHong Zhang /*@C 138111a5261eSBarry Smith MatCreateSELL - Creates a sparse parallel matrix in `MATSELL` format. 1382d4002b98SHong Zhang 1383d083f849SBarry Smith Collective 1384d4002b98SHong Zhang 1385d4002b98SHong Zhang Input Parameters: 1386d4002b98SHong Zhang + comm - MPI communicator 138711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 1388d4002b98SHong Zhang This value should be the same as the local size used in creating the 1389d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1390d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 139120f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 139220f4b53cSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 139320f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 139420f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 1395d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1396d4002b98SHong Zhang (same value is used for all local rows) 1397d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1398d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 139920f4b53cSBarry Smith or `NULL`, if d_rlenmax is used to specify the nonzero structure. 140020f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 1401d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1402d4002b98SHong Zhang submatrix (same value is used for all local rows). 1403d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1404d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 140520f4b53cSBarry Smith each row) or `NULL`, if `o_rlenmax` is used to specify the nonzero 1406d4002b98SHong Zhang structure. The size of this array is equal to the number 140720f4b53cSBarry Smith of local rows, i.e `m`. 1408d4002b98SHong Zhang 1409d4002b98SHong Zhang Output Parameter: 1410d4002b98SHong Zhang . A - the matrix 1411d4002b98SHong Zhang 141227430b45SBarry Smith Options Database Key: 1413fe59aa6dSJacob Faibussowitsch . -mat_sell_oneindex - Internally use indexing starting at 1 141427430b45SBarry Smith rather than 0. When calling `MatSetValues()`, 141527430b45SBarry Smith the user still MUST index entries starting at 0! 141627430b45SBarry Smith 141727430b45SBarry Smith Example: 141827430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 141927430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 142027430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 142127430b45SBarry Smith as follows 142227430b45SBarry Smith 142327430b45SBarry Smith .vb 142427430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 142527430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 142627430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 142727430b45SBarry Smith ------------------------------------- 142827430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 142927430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 143027430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 143127430b45SBarry Smith ------------------------------------- 143227430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 143327430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 143427430b45SBarry Smith .ve 143527430b45SBarry Smith 143620f4b53cSBarry Smith This can be represented as a collection of submatrices as 143727430b45SBarry Smith .vb 143827430b45SBarry Smith A B C 143927430b45SBarry Smith D E F 144027430b45SBarry Smith G H I 144127430b45SBarry Smith .ve 144227430b45SBarry Smith 144327430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 144427430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 144527430b45SBarry Smith 144627430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 144727430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 144827430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 144927430b45SBarry Smith 145027430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 145127430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 145227430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 145327430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 145427430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 14555163b989SNuno Nobre matrix, and [DF] as another `MATSEQSELL` matrix. 145627430b45SBarry Smith 145727430b45SBarry Smith When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 14585163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and o_rlenmax 14595163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 14605163b989SNuno Nobre One way to choose `d_rlenmax` and `o_rlenmax` is to use the maximum number of nonzeros over 14615163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 146220f4b53cSBarry Smith In this case, the values of d_rlenmax,o_rlenmax are 146327430b45SBarry Smith .vb 146420f4b53cSBarry Smith proc0 - d_rlenmax = 2, o_rlenmax = 2 146520f4b53cSBarry Smith proc1 - d_rlenmax = 3, o_rlenmax = 2 146620f4b53cSBarry Smith proc2 - d_rlenmax = 1, o_rlenmax = 4 146727430b45SBarry Smith .ve 146827430b45SBarry Smith We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 146927430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 147027430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 147127430b45SBarry Smith 34 values. 147227430b45SBarry Smith 147320f4b53cSBarry Smith When `d_rlen`, `o_rlen` parameters are specified, the storage is specified 147427430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 147520f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 147627430b45SBarry Smith .vb 147720f4b53cSBarry Smith proc0 - d_nnz = [2,2,2] and o_nnz = [2,2,2] 147820f4b53cSBarry Smith proc1 - d_nnz = [3,3,2] and o_nnz = [2,1,1] 147920f4b53cSBarry Smith proc2 - d_nnz = [1,1] and o_nnz = [4,4] 148027430b45SBarry Smith .ve 148127430b45SBarry Smith Here the space allocated is still 37 though there are 34 nonzeros because 148227430b45SBarry Smith the allocation is always done according to rlenmax. 148327430b45SBarry Smith 148427430b45SBarry Smith Level: intermediate 148527430b45SBarry Smith 148627430b45SBarry Smith Notes: 148711a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 1488f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 148911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 1490d4002b98SHong Zhang 1491d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1492d4002b98SHong Zhang 149320f4b53cSBarry Smith `m`, `n`, `M`, `N` parameters specify the size of the matrix, and its partitioning across 149420f4b53cSBarry Smith processors, while `d_rlenmax`, `d_rlen`, `o_rlenmax` , `o_rlen` parameters specify the approximate 1495d4002b98SHong Zhang storage requirements for this matrix. 1496d4002b98SHong Zhang 149711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 1498d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1499d4002b98SHong Zhang that argument. 1500d4002b98SHong Zhang 1501d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1502d4002b98SHong Zhang (possibly both). 1503d4002b98SHong Zhang 1504d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1505d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1506d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1507d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 150820f4b53cSBarry Smith values corresponding to [`m` x `N`] submatrix. 1509d4002b98SHong Zhang 1510d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1511d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 151220f4b53cSBarry Smith partition etc.. where n0,n1,n2... are the input parameter `n`. 1513d4002b98SHong Zhang 1514d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 151520f4b53cSBarry Smith is the submatrix corresponding to the rows and columns `m`, `n` 1516d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1517d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1518d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1519d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1520d4002b98SHong Zhang illustrates this concept. 1521d4002b98SHong Zhang 1522d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1523d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1524d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1525d4002b98SHong Zhang local matrix (a rectangular submatrix). 1526d4002b98SHong Zhang 152720f4b53cSBarry Smith If `o_rlen`, `d_rlen` are specified, then `o_rlenmax`, and `d_rlenmax` are ignored. 1528d4002b98SHong Zhang 1529d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 153011a5261eSBarry Smith type `MATSEQSELL` is returned. If a matrix of type `MATMPISELL` is desired for this 153127430b45SBarry Smith type of communicator, use the construction mechanism 1532d4002b98SHong Zhang .vb 153327430b45SBarry Smith MatCreate(...,&A); 153427430b45SBarry Smith MatSetType(A,MATMPISELL); 153527430b45SBarry Smith MatSetSizes(A, m,n,M,N); 153627430b45SBarry Smith MatMPISELLSetPreallocation(A,...); 1537d4002b98SHong Zhang .ve 1538d4002b98SHong Zhang 153994764886SPierre Jolivet .seealso: `Mat`, `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MATMPISELL` 1540d4002b98SHong Zhang @*/ 1541d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[], Mat *A) 1542d71ae5a4SJacob Faibussowitsch { 1543d4002b98SHong Zhang PetscMPIInt size; 1544d4002b98SHong Zhang 1545d4002b98SHong Zhang PetscFunctionBegin; 15469566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 15479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 15489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1549d4002b98SHong Zhang if (size > 1) { 15509566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISELL)); 15519566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A, d_rlenmax, d_rlen, o_rlenmax, o_rlen)); 1552d4002b98SHong Zhang } else { 15539566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 15549566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A, d_rlenmax, d_rlen)); 1555d4002b98SHong Zhang } 15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1557d4002b98SHong Zhang } 1558d4002b98SHong Zhang 1559fa078d78SJacob Faibussowitsch /*@C 1560fa078d78SJacob Faibussowitsch MatMPISELLGetSeqSELL - Returns the local pieces of this distributed matrix 1561fa078d78SJacob Faibussowitsch 1562fa078d78SJacob Faibussowitsch Not Collective 1563fa078d78SJacob Faibussowitsch 1564fa078d78SJacob Faibussowitsch Input Parameter: 1565fa078d78SJacob Faibussowitsch . A - the `MATMPISELL` matrix 1566fa078d78SJacob Faibussowitsch 1567fa078d78SJacob Faibussowitsch Output Parameters: 1568fa078d78SJacob Faibussowitsch + Ad - The diagonal portion of `A` 15694cf0e950SBarry Smith . Ao - The off-diagonal portion of `A` 1570fa078d78SJacob Faibussowitsch - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 1571fa078d78SJacob Faibussowitsch 1572fa078d78SJacob Faibussowitsch Level: advanced 1573fa078d78SJacob Faibussowitsch 1574fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL` 1575fa078d78SJacob Faibussowitsch @*/ 1576fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetSeqSELL(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 1577fa078d78SJacob Faibussowitsch { 1578fa078d78SJacob Faibussowitsch Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1579fa078d78SJacob Faibussowitsch PetscBool flg; 1580fa078d78SJacob Faibussowitsch 1581fa078d78SJacob Faibussowitsch PetscFunctionBegin; 1582fa078d78SJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &flg)); 1583fa078d78SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPISELL matrix as input"); 1584fa078d78SJacob Faibussowitsch if (Ad) *Ad = a->A; 1585fa078d78SJacob Faibussowitsch if (Ao) *Ao = a->B; 1586fa078d78SJacob Faibussowitsch if (colmap) *colmap = a->garray; 1587fa078d78SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1588fa078d78SJacob Faibussowitsch } 1589fa078d78SJacob Faibussowitsch 1590fa078d78SJacob Faibussowitsch /*@C 1591fa078d78SJacob Faibussowitsch MatMPISELLGetLocalMatCondensed - Creates a `MATSEQSELL` matrix from an `MATMPISELL` matrix by 1592fa078d78SJacob Faibussowitsch taking all its local rows and NON-ZERO columns 1593fa078d78SJacob Faibussowitsch 1594fa078d78SJacob Faibussowitsch Not Collective 1595fa078d78SJacob Faibussowitsch 1596fa078d78SJacob Faibussowitsch Input Parameters: 1597fa078d78SJacob Faibussowitsch + A - the matrix 1598fa078d78SJacob Faibussowitsch . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 1599fa078d78SJacob Faibussowitsch . row - index sets of rows to extract (or `NULL`) 1600fa078d78SJacob Faibussowitsch - col - index sets of columns to extract (or `NULL`) 1601fa078d78SJacob Faibussowitsch 1602fa078d78SJacob Faibussowitsch Output Parameter: 1603fa078d78SJacob Faibussowitsch . A_loc - the local sequential matrix generated 1604fa078d78SJacob Faibussowitsch 1605fa078d78SJacob Faibussowitsch Level: advanced 1606fa078d78SJacob Faibussowitsch 1607fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL`, `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()` 1608fa078d78SJacob Faibussowitsch @*/ 1609fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 1610fa078d78SJacob Faibussowitsch { 1611fa078d78SJacob Faibussowitsch Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1612fa078d78SJacob Faibussowitsch PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 1613fa078d78SJacob Faibussowitsch IS isrowa, iscola; 1614fa078d78SJacob Faibussowitsch Mat *aloc; 1615fa078d78SJacob Faibussowitsch PetscBool match; 1616fa078d78SJacob Faibussowitsch 1617fa078d78SJacob Faibussowitsch PetscFunctionBegin; 1618fa078d78SJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &match)); 1619fa078d78SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPISELL matrix as input"); 1620fa078d78SJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 1621fa078d78SJacob Faibussowitsch if (!row) { 1622fa078d78SJacob Faibussowitsch start = A->rmap->rstart; 1623fa078d78SJacob Faibussowitsch end = A->rmap->rend; 1624fa078d78SJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 1625fa078d78SJacob Faibussowitsch } else { 1626fa078d78SJacob Faibussowitsch isrowa = *row; 1627fa078d78SJacob Faibussowitsch } 1628fa078d78SJacob Faibussowitsch if (!col) { 1629fa078d78SJacob Faibussowitsch start = A->cmap->rstart; 1630fa078d78SJacob Faibussowitsch cmap = a->garray; 1631fa078d78SJacob Faibussowitsch nzA = a->A->cmap->n; 1632fa078d78SJacob Faibussowitsch nzB = a->B->cmap->n; 1633fa078d78SJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 1634fa078d78SJacob Faibussowitsch ncols = 0; 1635fa078d78SJacob Faibussowitsch for (i = 0; i < nzB; i++) { 1636fa078d78SJacob Faibussowitsch if (cmap[i] < start) idx[ncols++] = cmap[i]; 1637fa078d78SJacob Faibussowitsch else break; 1638fa078d78SJacob Faibussowitsch } 1639fa078d78SJacob Faibussowitsch imark = i; 1640fa078d78SJacob Faibussowitsch for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 1641fa078d78SJacob Faibussowitsch for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 1642fa078d78SJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 1643fa078d78SJacob Faibussowitsch } else { 1644fa078d78SJacob Faibussowitsch iscola = *col; 1645fa078d78SJacob Faibussowitsch } 1646fa078d78SJacob Faibussowitsch if (scall != MAT_INITIAL_MATRIX) { 1647fa078d78SJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 1648fa078d78SJacob Faibussowitsch aloc[0] = *A_loc; 1649fa078d78SJacob Faibussowitsch } 1650fa078d78SJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 1651fa078d78SJacob Faibussowitsch *A_loc = aloc[0]; 1652fa078d78SJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1653fa078d78SJacob Faibussowitsch if (!row) PetscCall(ISDestroy(&isrowa)); 1654fa078d78SJacob Faibussowitsch if (!col) PetscCall(ISDestroy(&iscola)); 1655fa078d78SJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 1656fa078d78SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1657fa078d78SJacob Faibussowitsch } 1658fa078d78SJacob Faibussowitsch 1659d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1660d4002b98SHong Zhang 1661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1662d71ae5a4SJacob Faibussowitsch { 1663d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1664d4002b98SHong Zhang Mat B; 1665d4002b98SHong Zhang Mat_MPIAIJ *b; 1666d4002b98SHong Zhang 1667d4002b98SHong Zhang PetscFunctionBegin; 166828b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1669d4002b98SHong Zhang 167094a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 167194a8b381SRichard Tran Mills B = *newmat; 167294a8b381SRichard Tran Mills } else { 16739566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 16749566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 16759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 16769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 16779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 16789566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 167994a8b381SRichard Tran Mills } 1680d4002b98SHong Zhang b = (Mat_MPIAIJ *)B->data; 168194a8b381SRichard Tran Mills 168294a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16839566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16849566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 168594a8b381SRichard Tran Mills } else { 16869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16889566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16899566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16909566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 16929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 16939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 169594a8b381SRichard Tran Mills } 1696d4002b98SHong Zhang 1697d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16989566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1699d4002b98SHong Zhang } else { 1700d4002b98SHong Zhang *newmat = B; 1701d4002b98SHong Zhang } 17023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1703d4002b98SHong Zhang } 1704d4002b98SHong Zhang 1705d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1706d71ae5a4SJacob Faibussowitsch { 1707d4002b98SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1708d4002b98SHong Zhang Mat B; 1709d4002b98SHong Zhang Mat_MPISELL *b; 1710d4002b98SHong Zhang 1711d4002b98SHong Zhang PetscFunctionBegin; 171228b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1713d4002b98SHong Zhang 171494a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 171594a8b381SRichard Tran Mills B = *newmat; 171694a8b381SRichard Tran Mills } else { 17172d1451d4SHong Zhang Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)a->A->data, *Ba = (Mat_SeqAIJ *)a->B->data; 17182d1451d4SHong Zhang PetscInt i, d_nz = 0, o_nz = 0, m = A->rmap->N, n = A->cmap->N, lm = A->rmap->n, ln = A->cmap->n; 17192d1451d4SHong Zhang PetscInt *d_nnz, *o_nnz; 17202d1451d4SHong Zhang PetscCall(PetscMalloc2(lm, &d_nnz, lm, &o_nnz)); 17212d1451d4SHong Zhang for (i = 0; i < lm; i++) { 17222d1451d4SHong Zhang d_nnz[i] = Aa->i[i + 1] - Aa->i[i]; 17232d1451d4SHong Zhang o_nnz[i] = Ba->i[i + 1] - Ba->i[i]; 17242d1451d4SHong Zhang if (d_nnz[i] > d_nz) d_nz = d_nnz[i]; 17252d1451d4SHong Zhang if (o_nnz[i] > o_nz) o_nz = o_nnz[i]; 17262d1451d4SHong Zhang } 17279566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 17289566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISELL)); 17292d1451d4SHong Zhang PetscCall(MatSetSizes(B, lm, ln, m, n)); 17309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 17312d1451d4SHong Zhang PetscCall(MatSeqSELLSetPreallocation(B, d_nz, d_nnz)); 17322d1451d4SHong Zhang PetscCall(MatMPISELLSetPreallocation(B, d_nz, d_nnz, o_nz, o_nnz)); 17332d1451d4SHong Zhang PetscCall(PetscFree2(d_nnz, o_nnz)); 173494a8b381SRichard Tran Mills } 1735d4002b98SHong Zhang b = (Mat_MPISELL *)B->data; 173694a8b381SRichard Tran Mills 173794a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17389566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17399566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 174094a8b381SRichard Tran Mills } else { 17419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17439566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17449566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 17469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 17472d1451d4SHong Zhang PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 17482d1451d4SHong Zhang PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 174994a8b381SRichard Tran Mills } 1750d4002b98SHong Zhang 1751d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17529566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1753d4002b98SHong Zhang } else { 1754d4002b98SHong Zhang *newmat = B; 1755d4002b98SHong Zhang } 17563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1757d4002b98SHong Zhang } 1758d4002b98SHong Zhang 1759d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISELL(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1760d71ae5a4SJacob Faibussowitsch { 1761d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 1762f4259b30SLisandro Dalcin Vec bb1 = NULL; 1763d4002b98SHong Zhang 1764d4002b98SHong Zhang PetscFunctionBegin; 1765d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 17673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1768d4002b98SHong Zhang } 1769d4002b98SHong Zhang 177048a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 1771d4002b98SHong Zhang 1772d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1773d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17749566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1775d4002b98SHong Zhang its--; 1776d4002b98SHong Zhang } 1777d4002b98SHong Zhang 1778d4002b98SHong Zhang while (its--) { 17799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17809566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1781d4002b98SHong Zhang 1782d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17839566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17849566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1785d4002b98SHong Zhang 1786d4002b98SHong Zhang /* local sweep */ 17879566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 1788d4002b98SHong Zhang } 1789d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1790d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1792d4002b98SHong Zhang its--; 1793d4002b98SHong Zhang } 1794d4002b98SHong Zhang while (its--) { 17959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17969566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1797d4002b98SHong Zhang 1798d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17999566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 18009566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1801d4002b98SHong Zhang 1802d4002b98SHong Zhang /* local sweep */ 18039566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 1804d4002b98SHong Zhang } 1805d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1806d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 18079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1808d4002b98SHong Zhang its--; 1809d4002b98SHong Zhang } 1810d4002b98SHong Zhang while (its--) { 18119566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 18129566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1813d4002b98SHong Zhang 1814d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 18159566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 18169566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1817d4002b98SHong Zhang 1818d4002b98SHong Zhang /* local sweep */ 18199566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 1820d4002b98SHong Zhang } 1821d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1822d4002b98SHong Zhang 18239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1824d4002b98SHong Zhang 1825d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 18263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1827d4002b98SHong Zhang } 1828d4002b98SHong Zhang 1829b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1830b5917f1bSHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPISELL_MPISELLCUDA(Mat, MatType, MatReuse, Mat *); 1831b5917f1bSHong Zhang #endif 1832b5917f1bSHong Zhang 1833d4002b98SHong Zhang /*MC 1834d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1835d4002b98SHong Zhang 1836d4002b98SHong Zhang Options Database Keys: 183711a5261eSBarry Smith . -mat_type mpisell - sets the matrix type to `MATMPISELL` during a call to `MatSetFromOptions()` 1838d4002b98SHong Zhang 1839d4002b98SHong Zhang Level: beginner 1840d4002b98SHong Zhang 184167be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MATSEQSELL` `MatCreateSELL()` 1842d4002b98SHong Zhang M*/ 1843d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1844d71ae5a4SJacob Faibussowitsch { 1845d4002b98SHong Zhang Mat_MPISELL *b; 1846d4002b98SHong Zhang PetscMPIInt size; 1847d4002b98SHong Zhang 1848d4002b98SHong Zhang PetscFunctionBegin; 18499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 18504dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 1851d4002b98SHong Zhang B->data = (void *)b; 1852aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 1853d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1854d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1855d4002b98SHong Zhang b->size = size; 18569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 1857d4002b98SHong Zhang /* build cache for off array entries formed */ 18589566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 1859d4002b98SHong Zhang 1860d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1861f4259b30SLisandro Dalcin b->colmap = NULL; 1862f4259b30SLisandro Dalcin b->garray = NULL; 1863d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1864d4002b98SHong Zhang 1865d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1866d4002b98SHong Zhang b->lvec = NULL; 1867d4002b98SHong Zhang b->Mvctx = NULL; 1868d4002b98SHong Zhang 1869d4002b98SHong Zhang /* stuff for MatGetRow() */ 1870f4259b30SLisandro Dalcin b->rowindices = NULL; 1871f4259b30SLisandro Dalcin b->rowvalues = NULL; 1872d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1873d4002b98SHong Zhang 18749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISELL)); 18759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISELL)); 18769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPISELL)); 18779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISELLSetPreallocation_C", MatMPISELLSetPreallocation_MPISELL)); 18789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpiaij_C", MatConvert_MPISELL_MPIAIJ)); 1879b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1880b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpisellcuda_C", MatConvert_MPISELL_MPISELLCUDA)); 1881b5917f1bSHong Zhang #endif 18829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPISELL)); 18839566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISELL)); 18843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1885d4002b98SHong Zhang } 1886