xref: /petsc/src/mat/impls/sell/mpi/mpisell.c (revision 5f9db2b25dbeb4dbaf539bdb264ccb4c01c47bc2)
1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>   /*I "petscmat.h" I*/
2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h>   /*I "petscmat.h" I*/
3d4002b98SHong Zhang #include <petsc/private/vecimpl.h>
4d4002b98SHong Zhang #include <petsc/private/isimpl.h>
5d4002b98SHong Zhang #include <petscblaslapack.h>
6d4002b98SHong Zhang #include <petscsf.h>
7d4002b98SHong Zhang 
8d4002b98SHong Zhang /*MC
9d4002b98SHong Zhang    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices.
10d4002b98SHong Zhang 
11d4002b98SHong Zhang    This matrix type is identical to MATSEQSELL when constructed with a single process communicator,
12d4002b98SHong Zhang    and MATMPISELL otherwise.  As a result, for single process communicators,
13d4002b98SHong Zhang   MatSeqSELLSetPreallocation is supported, and similarly MatMPISELLSetPreallocation is supported
14d4002b98SHong Zhang   for communicators controlling multiple processes.  It is recommended that you call both of
15d4002b98SHong Zhang   the above preallocation routines for simplicity.
16d4002b98SHong Zhang 
17d4002b98SHong Zhang    Options Database Keys:
18d4002b98SHong Zhang . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
19d4002b98SHong Zhang 
20d4002b98SHong Zhang   Level: beginner
21d4002b98SHong Zhang 
22db781477SPatrick Sanan .seealso: `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL`
23d4002b98SHong Zhang M*/
24d4002b98SHong Zhang 
25d4002b98SHong Zhang PetscErrorCode MatDiagonalSet_MPISELL(Mat Y,Vec D,InsertMode is)
26d4002b98SHong Zhang {
27d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)Y->data;
28d4002b98SHong Zhang 
29d4002b98SHong Zhang   PetscFunctionBegin;
30d4002b98SHong Zhang   if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) {
319566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(sell->A,D,is));
32d4002b98SHong Zhang   } else {
339566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y,D,is));
34d4002b98SHong Zhang   }
35d4002b98SHong Zhang   PetscFunctionReturn(0);
36d4002b98SHong Zhang }
37d4002b98SHong Zhang 
38d4002b98SHong Zhang /*
39d4002b98SHong Zhang   Local utility routine that creates a mapping from the global column
40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local
41d4002b98SHong Zhang storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor
43d4002b98SHong Zhang has an order N integer array but is fast to acess.
44d4002b98SHong Zhang */
45d4002b98SHong Zhang PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat)
46d4002b98SHong Zhang {
47d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
48d4002b98SHong Zhang   PetscInt       n=sell->B->cmap->n,i;
49d4002b98SHong Zhang 
50d4002b98SHong Zhang   PetscFunctionBegin;
5128b400f6SJacob Faibussowitsch   PetscCheck(sell->garray,PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPISELL Matrix was assembled but is missing garray");
52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
539566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(n,mat->cmap->N+1,&sell->colmap));
54d4002b98SHong Zhang   for (i=0; i<n; i++) {
559566063dSJacob Faibussowitsch     PetscCall(PetscTableAdd(sell->colmap,sell->garray[i]+1,i+1,INSERT_VALUES));
56d4002b98SHong Zhang   }
57d4002b98SHong Zhang #else
589566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N+1,&sell->colmap));
599566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N+1)*sizeof(PetscInt)));
60d4002b98SHong Zhang   for (i=0; i<n; i++) sell->colmap[sell->garray[i]] = i+1;
61d4002b98SHong Zhang #endif
62d4002b98SHong Zhang   PetscFunctionReturn(0);
63d4002b98SHong Zhang }
64d4002b98SHong Zhang 
65d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row,col,value,addv,orow,ocol) \
66d4002b98SHong Zhang   { \
67d4002b98SHong Zhang     if (col <= lastcol1) low1 = 0; \
68d4002b98SHong Zhang     else                high1 = nrow1; \
69d4002b98SHong Zhang     lastcol1 = col; \
70d4002b98SHong Zhang     while (high1-low1 > 5) { \
71d4002b98SHong Zhang       t = (low1+high1)/2; \
72d4002b98SHong Zhang       if (*(cp1+8*t) > col) high1 = t; \
73d4002b98SHong Zhang       else                   low1 = t; \
74d4002b98SHong Zhang     } \
75d4002b98SHong Zhang     for (_i=low1; _i<high1; _i++) { \
76d4002b98SHong Zhang       if (*(cp1+8*_i) > col) break; \
77d4002b98SHong Zhang       if (*(cp1+8*_i) == col) { \
78d4002b98SHong Zhang         if (addv == ADD_VALUES) *(vp1+8*_i) += value;   \
79d4002b98SHong Zhang         else                     *(vp1+8*_i) = value; \
80d4002b98SHong Zhang         goto a_noinsert; \
81d4002b98SHong Zhang       } \
82d4002b98SHong Zhang     }  \
83d4002b98SHong Zhang     if (value == 0.0 && ignorezeroentries) {low1 = 0; high1 = nrow1;goto a_noinsert;} \
84d4002b98SHong Zhang     if (nonew == 1) {low1 = 0; high1 = nrow1; goto a_noinsert;} \
8508401ef6SPierre Jolivet     PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
86d4002b98SHong Zhang     MatSeqXSELLReallocateSELL(A,am,1,nrow1,a->sliidx,row/8,row,col,a->colidx,a->val,cp1,vp1,nonew,MatScalar); \
87d4002b98SHong Zhang     /* shift up all the later entries in this row */ \
88d4002b98SHong Zhang     for (ii=nrow1-1; ii>=_i; ii--) { \
89d4002b98SHong Zhang       *(cp1+8*(ii+1)) = *(cp1+8*ii); \
90d4002b98SHong Zhang       *(vp1+8*(ii+1)) = *(vp1+8*ii); \
91d4002b98SHong Zhang     } \
92d4002b98SHong Zhang     *(cp1+8*_i) = col; \
93d4002b98SHong Zhang     *(vp1+8*_i) = value; \
94d4002b98SHong Zhang     a->nz++; nrow1++; A->nonzerostate++; \
95d4002b98SHong Zhang     a_noinsert: ; \
96d4002b98SHong Zhang     a->rlen[row] = nrow1; \
97d4002b98SHong Zhang   }
98d4002b98SHong Zhang 
99d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row,col,value,addv,orow,ocol) \
100d4002b98SHong Zhang   { \
101d4002b98SHong Zhang     if (col <= lastcol2) low2 = 0; \
102d4002b98SHong Zhang     else                high2 = nrow2; \
103d4002b98SHong Zhang     lastcol2 = col; \
104d4002b98SHong Zhang     while (high2-low2 > 5) { \
105d4002b98SHong Zhang       t = (low2+high2)/2; \
106d4002b98SHong Zhang       if (*(cp2+8*t) > col) high2 = t; \
107d4002b98SHong Zhang       else low2  = t; \
108d4002b98SHong Zhang     } \
109d4002b98SHong Zhang     for (_i=low2; _i<high2; _i++) { \
110d4002b98SHong Zhang       if (*(cp2+8*_i) > col) break; \
111d4002b98SHong Zhang       if (*(cp2+8*_i) == col) { \
112d4002b98SHong Zhang         if (addv == ADD_VALUES) *(vp2+8*_i) += value; \
113d4002b98SHong Zhang         else                     *(vp2+8*_i) = value; \
114d4002b98SHong Zhang         goto b_noinsert; \
115d4002b98SHong Zhang       } \
116d4002b98SHong Zhang     } \
117d4002b98SHong Zhang     if (value == 0.0 && ignorezeroentries) {low2 = 0; high2 = nrow2; goto b_noinsert;} \
118d4002b98SHong Zhang     if (nonew == 1) {low2 = 0; high2 = nrow2; goto b_noinsert;} \
11908401ef6SPierre Jolivet     PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
120d4002b98SHong Zhang     MatSeqXSELLReallocateSELL(B,bm,1,nrow2,b->sliidx,row/8,row,col,b->colidx,b->val,cp2,vp2,nonew,MatScalar); \
121d4002b98SHong Zhang     /* shift up all the later entries in this row */ \
122d4002b98SHong Zhang     for (ii=nrow2-1; ii>=_i; ii--) { \
123d4002b98SHong Zhang       *(cp2+8*(ii+1)) = *(cp2+8*ii); \
124d4002b98SHong Zhang       *(vp2+8*(ii+1)) = *(vp2+8*ii); \
125d4002b98SHong Zhang     } \
126d4002b98SHong Zhang     *(cp2+8*_i) = col; \
127d4002b98SHong Zhang     *(vp2+8*_i) = value; \
128d4002b98SHong Zhang     b->nz++; nrow2++; B->nonzerostate++; \
129d4002b98SHong Zhang     b_noinsert: ; \
130d4002b98SHong Zhang     b->rlen[row] = nrow2; \
131d4002b98SHong Zhang   }
132d4002b98SHong Zhang 
133d4002b98SHong Zhang PetscErrorCode MatSetValues_MPISELL(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
134d4002b98SHong Zhang {
135d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
136d4002b98SHong Zhang   PetscScalar    value;
137d4002b98SHong Zhang   PetscInt       i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend,shift1,shift2;
138d4002b98SHong Zhang   PetscInt       cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col;
139d4002b98SHong Zhang   PetscBool      roworiented=sell->roworiented;
140d4002b98SHong Zhang 
141d4002b98SHong Zhang   /* Some Variables required in the macro */
142d4002b98SHong Zhang   Mat            A=sell->A;
143d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
144d4002b98SHong Zhang   PetscBool      ignorezeroentries=a->ignorezeroentries,found;
145d4002b98SHong Zhang   Mat            B=sell->B;
146d4002b98SHong Zhang   Mat_SeqSELL    *b=(Mat_SeqSELL*)B->data;
147d4002b98SHong Zhang   PetscInt       *cp1,*cp2,ii,_i,nrow1,nrow2,low1,high1,low2,high2,t,lastcol1,lastcol2;
148d4002b98SHong Zhang   MatScalar      *vp1,*vp2;
149d4002b98SHong Zhang 
150d4002b98SHong Zhang   PetscFunctionBegin;
151d4002b98SHong Zhang   for (i=0; i<m; i++) {
152d4002b98SHong Zhang     if (im[i] < 0) continue;
1536bdcaf15SBarry Smith     PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
154d4002b98SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
155d4002b98SHong Zhang       row      = im[i] - rstart;
156d4002b98SHong Zhang       lastcol1 = -1;
157d4002b98SHong Zhang       shift1   = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
158d4002b98SHong Zhang       cp1      = a->colidx+shift1;
159d4002b98SHong Zhang       vp1      = a->val+shift1;
160d4002b98SHong Zhang       nrow1    = a->rlen[row];
161d4002b98SHong Zhang       low1     = 0;
162d4002b98SHong Zhang       high1    = nrow1;
163d4002b98SHong Zhang       lastcol2 = -1;
164d4002b98SHong Zhang       shift2   = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */
165d4002b98SHong Zhang       cp2      = b->colidx+shift2;
166d4002b98SHong Zhang       vp2      = b->val+shift2;
167d4002b98SHong Zhang       nrow2    = b->rlen[row];
168d4002b98SHong Zhang       low2     = 0;
169d4002b98SHong Zhang       high2    = nrow2;
170d4002b98SHong Zhang 
171d4002b98SHong Zhang       for (j=0; j<n; j++) {
172d4002b98SHong Zhang         if (roworiented) value = v[i*n+j];
173d4002b98SHong Zhang         else             value = v[i+j*m];
174d4002b98SHong Zhang         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue;
175d4002b98SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
176d4002b98SHong Zhang           col   = in[j] - cstart;
177d4002b98SHong Zhang           MatSetValue_SeqSELL_Private(A,row,col,value,addv,im[i],in[j],cp1,vp1,lastcol1,low1,high1); /* set one value */
178f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
179f7d195e4SLawrence Mitchell           continue;
180f7d195e4SLawrence Mitchell         } else {
181f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
182d4002b98SHong Zhang           if (mat->was_assembled) {
183d4002b98SHong Zhang             if (!sell->colmap) {
1849566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPISELL_Private(mat));
185d4002b98SHong Zhang             }
186d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
1879566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(sell->colmap,in[j]+1,&col));
188d4002b98SHong Zhang             col--;
189d4002b98SHong Zhang #else
190d4002b98SHong Zhang             col = sell->colmap[in[j]] - 1;
191d4002b98SHong Zhang #endif
192d4002b98SHong Zhang             if (col < 0 && !((Mat_SeqSELL*)(sell->B->data))->nonew) {
1939566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISELL(mat));
194d4002b98SHong Zhang               col    = in[j];
195d4002b98SHong Zhang               /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */
196d4002b98SHong Zhang               B      = sell->B;
197d4002b98SHong Zhang               b      = (Mat_SeqSELL*)B->data;
198d4002b98SHong Zhang               shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */
199d4002b98SHong Zhang               cp2    = b->colidx+shift2;
200d4002b98SHong Zhang               vp2    = b->val+shift2;
201d4002b98SHong Zhang               nrow2  = b->rlen[row];
202d4002b98SHong Zhang               low2   = 0;
203d4002b98SHong Zhang               high2  = nrow2;
204f7d195e4SLawrence Mitchell             } else {
205f7d195e4SLawrence Mitchell               PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
206f7d195e4SLawrence Mitchell             }
207d4002b98SHong Zhang           } else col = in[j];
208d4002b98SHong Zhang           MatSetValue_SeqSELL_Private(B,row,col,value,addv,im[i],in[j],cp2,vp2,lastcol2,low2,high2); /* set one value */
209d4002b98SHong Zhang         }
210d4002b98SHong Zhang       }
211d4002b98SHong Zhang     } else {
21228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
213d4002b98SHong Zhang       if (!sell->donotstash) {
214d4002b98SHong Zhang         mat->assembled = PETSC_FALSE;
215d4002b98SHong Zhang         if (roworiented) {
2169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
217d4002b98SHong Zhang         } else {
2189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
219d4002b98SHong Zhang         }
220d4002b98SHong Zhang       }
221d4002b98SHong Zhang     }
222d4002b98SHong Zhang   }
223d4002b98SHong Zhang   PetscFunctionReturn(0);
224d4002b98SHong Zhang }
225d4002b98SHong Zhang 
226d4002b98SHong Zhang PetscErrorCode MatGetValues_MPISELL(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
227d4002b98SHong Zhang {
228d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
229d4002b98SHong Zhang   PetscInt       i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend;
230d4002b98SHong Zhang   PetscInt       cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col;
231d4002b98SHong Zhang 
232d4002b98SHong Zhang   PetscFunctionBegin;
233d4002b98SHong Zhang   for (i=0; i<m; i++) {
23454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
23554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
236d4002b98SHong Zhang     if (idxm[i] >= rstart && idxm[i] < rend) {
237d4002b98SHong Zhang       row = idxm[i] - rstart;
238d4002b98SHong Zhang       for (j=0; j<n; j++) {
23954c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
24054c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
241d4002b98SHong Zhang         if (idxn[j] >= cstart && idxn[j] < cend) {
242d4002b98SHong Zhang           col  = idxn[j] - cstart;
2439566063dSJacob Faibussowitsch           PetscCall(MatGetValues(sell->A,1,&row,1,&col,v+i*n+j));
244d4002b98SHong Zhang         } else {
245d4002b98SHong Zhang           if (!sell->colmap) {
2469566063dSJacob Faibussowitsch             PetscCall(MatCreateColmap_MPISELL_Private(mat));
247d4002b98SHong Zhang           }
248d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
2499566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(sell->colmap,idxn[j]+1,&col));
250d4002b98SHong Zhang           col--;
251d4002b98SHong Zhang #else
252d4002b98SHong Zhang           col = sell->colmap[idxn[j]] - 1;
253d4002b98SHong Zhang #endif
254d4002b98SHong Zhang           if ((col < 0) || (sell->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
255d4002b98SHong Zhang           else {
2569566063dSJacob Faibussowitsch             PetscCall(MatGetValues(sell->B,1,&row,1,&col,v+i*n+j));
257d4002b98SHong Zhang           }
258d4002b98SHong Zhang         }
259d4002b98SHong Zhang       }
260d4002b98SHong Zhang     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
261d4002b98SHong Zhang   }
262d4002b98SHong Zhang   PetscFunctionReturn(0);
263d4002b98SHong Zhang }
264d4002b98SHong Zhang 
265d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat,Vec,Vec);
266d4002b98SHong Zhang 
267d4002b98SHong Zhang PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat,MatAssemblyType mode)
268d4002b98SHong Zhang {
269d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
270d4002b98SHong Zhang   PetscInt       nstash,reallocs;
271d4002b98SHong Zhang 
272d4002b98SHong Zhang   PetscFunctionBegin;
273d4002b98SHong Zhang   if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
274d4002b98SHong Zhang 
2759566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range));
2769566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
2779566063dSJacob Faibussowitsch   PetscCall(PetscInfo(sell->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
278d4002b98SHong Zhang   PetscFunctionReturn(0);
279d4002b98SHong Zhang }
280d4002b98SHong Zhang 
281d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat,MatAssemblyType mode)
282d4002b98SHong Zhang {
283d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
284d4002b98SHong Zhang   PetscMPIInt    n;
285d4002b98SHong Zhang   PetscInt       i,flg;
286d4002b98SHong Zhang   PetscInt       *row,*col;
287d4002b98SHong Zhang   PetscScalar    *val;
288d4002b98SHong Zhang   PetscBool      other_disassembled;
289d4002b98SHong Zhang   /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */
290d4002b98SHong Zhang   PetscFunctionBegin;
291d4002b98SHong Zhang   if (!sell->donotstash && !mat->nooffprocentries) {
292d4002b98SHong Zhang     while (1) {
2939566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg));
294d4002b98SHong Zhang       if (!flg) break;
295d4002b98SHong Zhang 
296d4002b98SHong Zhang       for (i=0; i<n; i++) { /* assemble one by one */
2979566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISELL(mat,1,row+i,1,col+i,val+i,mat->insertmode));
298d4002b98SHong Zhang       }
299d4002b98SHong Zhang     }
3009566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
301d4002b98SHong Zhang   }
3029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(sell->A,mode));
3039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(sell->A,mode));
304d4002b98SHong Zhang 
305d4002b98SHong Zhang   /*
306d4002b98SHong Zhang      determine if any processor has disassembled, if so we must
3076aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble.
308d4002b98SHong Zhang   */
309d4002b98SHong Zhang   /*
310d4002b98SHong Zhang      if nonzero structure of submatrix B cannot change then we know that
311d4002b98SHong Zhang      no processor disassembled thus we can skip this stuff
312d4002b98SHong Zhang   */
313d4002b98SHong Zhang   if (!((Mat_SeqSELL*)sell->B->data)->nonew) {
314*5f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)mat)));
31508401ef6SPierre Jolivet     PetscCheck(!mat->was_assembled || other_disassembled,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatDisAssemble not implemented yet");
316d4002b98SHong Zhang   }
317d4002b98SHong Zhang   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
3189566063dSJacob Faibussowitsch     PetscCall(MatSetUpMultiply_MPISELL(mat));
319d4002b98SHong Zhang   }
320d4002b98SHong Zhang   /*
3219566063dSJacob Faibussowitsch   PetscCall(MatSetOption(sell->B,MAT_USE_INODES,PETSC_FALSE));
322d4002b98SHong Zhang   */
3239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(sell->B,mode));
3249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(sell->B,mode));
3259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sell->rowvalues,sell->rowindices));
326f4259b30SLisandro Dalcin   sell->rowvalues = NULL;
3279566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&sell->diag));
328d4002b98SHong Zhang 
329d4002b98SHong Zhang   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
330d4002b98SHong Zhang   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL*)(sell->A->data))->nonew) {
331d4002b98SHong Zhang     PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate;
3321c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat)));
333d4002b98SHong Zhang   }
334d4002b98SHong Zhang   PetscFunctionReturn(0);
335d4002b98SHong Zhang }
336d4002b98SHong Zhang 
337d4002b98SHong Zhang PetscErrorCode MatZeroEntries_MPISELL(Mat A)
338d4002b98SHong Zhang {
339d4002b98SHong Zhang   Mat_MPISELL    *l=(Mat_MPISELL*)A->data;
340d4002b98SHong Zhang 
341d4002b98SHong Zhang   PetscFunctionBegin;
3429566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
3439566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
344d4002b98SHong Zhang   PetscFunctionReturn(0);
345d4002b98SHong Zhang }
346d4002b98SHong Zhang 
347d4002b98SHong Zhang PetscErrorCode MatMult_MPISELL(Mat A,Vec xx,Vec yy)
348d4002b98SHong Zhang {
349d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
350d4002b98SHong Zhang   PetscInt       nt;
351d4002b98SHong Zhang 
352d4002b98SHong Zhang   PetscFunctionBegin;
3539566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx,&nt));
35408401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",A->cmap->n,nt);
3559566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
3569566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,yy));
3579566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
3589566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy));
359d4002b98SHong Zhang   PetscFunctionReturn(0);
360d4002b98SHong Zhang }
361d4002b98SHong Zhang 
362d4002b98SHong Zhang PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A,Vec bb,Vec xx)
363d4002b98SHong Zhang {
364d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
365d4002b98SHong Zhang 
366d4002b98SHong Zhang   PetscFunctionBegin;
3679566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A,bb,xx));
368d4002b98SHong Zhang   PetscFunctionReturn(0);
369d4002b98SHong Zhang }
370d4002b98SHong Zhang 
371d4002b98SHong Zhang PetscErrorCode MatMultAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz)
372d4002b98SHong Zhang {
373d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
374d4002b98SHong Zhang 
375d4002b98SHong Zhang   PetscFunctionBegin;
3769566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
3779566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz));
3789566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
3799566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz));
380d4002b98SHong Zhang   PetscFunctionReturn(0);
381d4002b98SHong Zhang }
382d4002b98SHong Zhang 
383d4002b98SHong Zhang PetscErrorCode MatMultTranspose_MPISELL(Mat A,Vec xx,Vec yy)
384d4002b98SHong Zhang {
385d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
386d4002b98SHong Zhang 
387d4002b98SHong Zhang   PetscFunctionBegin;
388d4002b98SHong Zhang   /* do nondiagonal part */
3899566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec));
390d4002b98SHong Zhang   /* do local part */
3919566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy));
392a29b4eb7SJunchao Zhang   /* add partial results together */
3939566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE));
3949566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE));
395d4002b98SHong Zhang   PetscFunctionReturn(0);
396d4002b98SHong Zhang }
397d4002b98SHong Zhang 
398d4002b98SHong Zhang PetscErrorCode MatIsTranspose_MPISELL(Mat Amat,Mat Bmat,PetscReal tol,PetscBool *f)
399d4002b98SHong Zhang {
400d4002b98SHong Zhang   MPI_Comm       comm;
401d4002b98SHong Zhang   Mat_MPISELL    *Asell=(Mat_MPISELL*)Amat->data,*Bsell;
402d4002b98SHong Zhang   Mat            Adia=Asell->A,Bdia,Aoff,Boff,*Aoffs,*Boffs;
403d4002b98SHong Zhang   IS             Me,Notme;
404d4002b98SHong Zhang   PetscInt       M,N,first,last,*notme,i;
405d4002b98SHong Zhang   PetscMPIInt    size;
406d4002b98SHong Zhang 
407d4002b98SHong Zhang   PetscFunctionBegin;
408d4002b98SHong Zhang   /* Easy test: symmetric diagonal block */
409d4002b98SHong Zhang   Bsell = (Mat_MPISELL*)Bmat->data; Bdia = Bsell->A;
4109566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia,Bdia,tol,f));
411d4002b98SHong Zhang   if (!*f) PetscFunctionReturn(0);
4129566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat,&comm));
4139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
414d4002b98SHong Zhang   if (size == 1) PetscFunctionReturn(0);
415d4002b98SHong Zhang 
416d4002b98SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
4179566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat,&M,&N));
4189566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat,&first,&last));
4199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N-last+first,&notme));
420d4002b98SHong Zhang   for (i=0; i<first; i++) notme[i] = i;
421d4002b98SHong Zhang   for (i=last; i<M; i++) notme[i-last+first] = i;
4229566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,PETSC_COPY_VALUES,&Notme));
4239566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me));
4249566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs));
425d4002b98SHong Zhang   Aoff = Aoffs[0];
4269566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs));
427d4002b98SHong Zhang   Boff = Boffs[0];
4289566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff,Boff,tol,f));
4299566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1,&Aoffs));
4309566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1,&Boffs));
4319566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
4329566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
4339566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
434d4002b98SHong Zhang   PetscFunctionReturn(0);
435d4002b98SHong Zhang }
436d4002b98SHong Zhang 
437d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz)
438d4002b98SHong Zhang {
439d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
440d4002b98SHong Zhang 
441d4002b98SHong Zhang   PetscFunctionBegin;
442d4002b98SHong Zhang   /* do nondiagonal part */
4439566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec));
444d4002b98SHong Zhang   /* do local part */
4459566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz));
446e4a140f6SJunchao Zhang   /* add partial results together */
4479566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE));
4489566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE));
449d4002b98SHong Zhang   PetscFunctionReturn(0);
450d4002b98SHong Zhang }
451d4002b98SHong Zhang 
452d4002b98SHong Zhang /*
453d4002b98SHong Zhang   This only works correctly for square matrices where the subblock A->A is the
454d4002b98SHong Zhang    diagonal block
455d4002b98SHong Zhang */
456d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_MPISELL(Mat A,Vec v)
457d4002b98SHong Zhang {
458d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
459d4002b98SHong Zhang 
460d4002b98SHong Zhang   PetscFunctionBegin;
46108401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
462aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"row partition must equal col partition");
4639566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A,v));
464d4002b98SHong Zhang   PetscFunctionReturn(0);
465d4002b98SHong Zhang }
466d4002b98SHong Zhang 
467d4002b98SHong Zhang PetscErrorCode MatScale_MPISELL(Mat A,PetscScalar aa)
468d4002b98SHong Zhang {
469d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
470d4002b98SHong Zhang 
471d4002b98SHong Zhang   PetscFunctionBegin;
4729566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A,aa));
4739566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B,aa));
474d4002b98SHong Zhang   PetscFunctionReturn(0);
475d4002b98SHong Zhang }
476d4002b98SHong Zhang 
477d4002b98SHong Zhang PetscErrorCode MatDestroy_MPISELL(Mat mat)
478d4002b98SHong Zhang {
479d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
480d4002b98SHong Zhang 
481d4002b98SHong Zhang   PetscFunctionBegin;
482d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
483c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
484d4002b98SHong Zhang #endif
4859566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
4869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&sell->diag));
4879566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&sell->A));
4889566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&sell->B));
489d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
4909566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&sell->colmap));
491d4002b98SHong Zhang #else
4929566063dSJacob Faibussowitsch   PetscCall(PetscFree(sell->colmap));
493d4002b98SHong Zhang #endif
4949566063dSJacob Faibussowitsch   PetscCall(PetscFree(sell->garray));
4959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&sell->lvec));
4969566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&sell->Mvctx));
4979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sell->rowvalues,sell->rowindices));
4989566063dSJacob Faibussowitsch   PetscCall(PetscFree(sell->ld));
4999566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
500d4002b98SHong Zhang 
5019566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL));
5029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL));
5039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL));
5049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C",NULL));
5059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISELLSetPreallocation_C",NULL));
5069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisell_mpiaij_C",NULL));
5079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL));
508d4002b98SHong Zhang   PetscFunctionReturn(0);
509d4002b98SHong Zhang }
510d4002b98SHong Zhang 
511d4002b98SHong Zhang #include <petscdraw.h>
512d4002b98SHong Zhang PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
513d4002b98SHong Zhang {
514d4002b98SHong Zhang   Mat_MPISELL       *sell=(Mat_MPISELL*)mat->data;
515d4002b98SHong Zhang   PetscMPIInt       rank=sell->rank,size=sell->size;
516d4002b98SHong Zhang   PetscBool         isdraw,iascii,isbinary;
517d4002b98SHong Zhang   PetscViewer       sviewer;
518d4002b98SHong Zhang   PetscViewerFormat format;
519d4002b98SHong Zhang 
520d4002b98SHong Zhang   PetscFunctionBegin;
5219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
5229566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
5239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
524d4002b98SHong Zhang   if (iascii) {
5259566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer,&format));
526d4002b98SHong Zhang     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
527d4002b98SHong Zhang       MatInfo   info;
5286335e310SSatish Balay       PetscInt *inodes;
529d4002b98SHong Zhang 
5309566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank));
5319566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat,MAT_LOCAL,&info));
5329566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(sell->A,NULL,&inodes,NULL));
5339566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
534d4002b98SHong Zhang       if (!inodes) {
535d0609cedSBarry Smith         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n",
536d0609cedSBarry Smith                                                      rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory));
537d4002b98SHong Zhang       } else {
538d0609cedSBarry Smith         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n",
539d0609cedSBarry Smith                                                      rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory));
540d4002b98SHong Zhang       }
5419566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(sell->A,MAT_LOCAL,&info));
5429566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
5439566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(sell->B,MAT_LOCAL,&info));
5449566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
5459566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
5469566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
5479566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n"));
5489566063dSJacob Faibussowitsch       PetscCall(VecScatterView(sell->Mvctx,viewer));
549d4002b98SHong Zhang       PetscFunctionReturn(0);
550d4002b98SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_INFO) {
551d4002b98SHong Zhang       PetscInt inodecount,inodelimit,*inodes;
5529566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(sell->A,&inodecount,&inodes,&inodelimit));
553d4002b98SHong Zhang       if (inodes) {
5549566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n",inodecount,inodelimit));
555d4002b98SHong Zhang       } else {
5569566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n"));
557d4002b98SHong Zhang       }
558d4002b98SHong Zhang       PetscFunctionReturn(0);
559d4002b98SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
560d4002b98SHong Zhang       PetscFunctionReturn(0);
561d4002b98SHong Zhang     }
562d4002b98SHong Zhang   } else if (isbinary) {
563d4002b98SHong Zhang     if (size == 1) {
5649566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)sell->A,((PetscObject)mat)->name));
5659566063dSJacob Faibussowitsch       PetscCall(MatView(sell->A,viewer));
566d4002b98SHong Zhang     } else {
5679566063dSJacob Faibussowitsch       /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */
568d4002b98SHong Zhang     }
569d4002b98SHong Zhang     PetscFunctionReturn(0);
570d4002b98SHong Zhang   } else if (isdraw) {
571d4002b98SHong Zhang     PetscDraw draw;
572d4002b98SHong Zhang     PetscBool isnull;
5739566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
5749566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw,&isnull));
575d4002b98SHong Zhang     if (isnull) PetscFunctionReturn(0);
576d4002b98SHong Zhang   }
577d4002b98SHong Zhang 
578d4002b98SHong Zhang   {
579d4002b98SHong Zhang     /* assemble the entire matrix onto first processor. */
580d4002b98SHong Zhang     Mat         A;
581d4002b98SHong Zhang     Mat_SeqSELL *Aloc;
582d4002b98SHong Zhang     PetscInt    M=mat->rmap->N,N=mat->cmap->N,*acolidx,row,col,i,j;
583d4002b98SHong Zhang     MatScalar   *aval;
584d4002b98SHong Zhang     PetscBool   isnonzero;
585d4002b98SHong Zhang 
5869566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A));
587dd400576SPatrick Sanan     if (rank == 0) {
5889566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,M,N,M,N));
589d4002b98SHong Zhang     } else {
5909566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,0,0,M,N));
591d4002b98SHong Zhang     }
592d4002b98SHong Zhang     /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */
5939566063dSJacob Faibussowitsch     PetscCall(MatSetType(A,MATMPISELL));
5949566063dSJacob Faibussowitsch     PetscCall(MatMPISELLSetPreallocation(A,0,NULL,0,NULL));
5959566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE));
5969566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A));
597d4002b98SHong Zhang 
598d4002b98SHong Zhang     /* copy over the A part */
599d4002b98SHong Zhang     Aloc = (Mat_SeqSELL*)sell->A->data;
600d4002b98SHong Zhang     acolidx = Aloc->colidx; aval = Aloc->val;
601d4002b98SHong Zhang     for (i=0; i<Aloc->totalslices; i++) { /* loop over slices */
602d4002b98SHong Zhang       for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) {
603d4002b98SHong Zhang         isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]);
604d4002b98SHong Zhang         if (isnonzero) { /* check the mask bit */
605d4002b98SHong Zhang           row  = (i<<3)+(j&0x07) + mat->rmap->rstart; /* i<<3 is the starting row of this slice */
606d4002b98SHong Zhang           col  = *acolidx + mat->rmap->rstart;
6079566063dSJacob Faibussowitsch           PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES));
608d4002b98SHong Zhang         }
609d4002b98SHong Zhang         aval++; acolidx++;
610d4002b98SHong Zhang       }
611d4002b98SHong Zhang     }
612d4002b98SHong Zhang 
613d4002b98SHong Zhang     /* copy over the B part */
614d4002b98SHong Zhang     Aloc = (Mat_SeqSELL*)sell->B->data;
615d4002b98SHong Zhang     acolidx = Aloc->colidx; aval = Aloc->val;
616d4002b98SHong Zhang     for (i=0; i<Aloc->totalslices; i++) {
617d4002b98SHong Zhang       for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) {
618d4002b98SHong Zhang         isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]);
619d4002b98SHong Zhang         if (isnonzero) {
620d4002b98SHong Zhang           row  = (i<<3)+(j&0x07) + mat->rmap->rstart;
621d4002b98SHong Zhang           col  = sell->garray[*acolidx];
6229566063dSJacob Faibussowitsch           PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES));
623d4002b98SHong Zhang         }
624d4002b98SHong Zhang         aval++; acolidx++;
625d4002b98SHong Zhang       }
626d4002b98SHong Zhang     }
627d4002b98SHong Zhang 
6289566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
6299566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
630d4002b98SHong Zhang     /*
631d4002b98SHong Zhang        Everyone has to call to draw the matrix since the graphics waits are
632d4002b98SHong Zhang        synchronized across all processors that share the PetscDraw object
633d4002b98SHong Zhang     */
6349566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
635dd400576SPatrick Sanan     if (rank == 0) {
6369566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL*)(A->data))->A,((PetscObject)mat)->name));
6379566063dSJacob Faibussowitsch       PetscCall(MatView_SeqSELL(((Mat_MPISELL*)(A->data))->A,sviewer));
638d4002b98SHong Zhang     }
6399566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
6409566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
6419566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
642d4002b98SHong Zhang   }
643d4002b98SHong Zhang   PetscFunctionReturn(0);
644d4002b98SHong Zhang }
645d4002b98SHong Zhang 
646d4002b98SHong Zhang PetscErrorCode MatView_MPISELL(Mat mat,PetscViewer viewer)
647d4002b98SHong Zhang {
648d4002b98SHong Zhang   PetscBool      iascii,isdraw,issocket,isbinary;
649d4002b98SHong Zhang 
650d4002b98SHong Zhang   PetscFunctionBegin;
6519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
6529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
6539566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
6549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket));
655d4002b98SHong Zhang   if (iascii || isdraw || isbinary || issocket) {
6569566063dSJacob Faibussowitsch     PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat,viewer));
657d4002b98SHong Zhang   }
658d4002b98SHong Zhang   PetscFunctionReturn(0);
659d4002b98SHong Zhang }
660d4002b98SHong Zhang 
661d4002b98SHong Zhang PetscErrorCode MatGetGhosts_MPISELL(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
662d4002b98SHong Zhang {
663d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
664d4002b98SHong Zhang 
665d4002b98SHong Zhang   PetscFunctionBegin;
6669566063dSJacob Faibussowitsch   PetscCall(MatGetSize(sell->B,NULL,nghosts));
667d4002b98SHong Zhang   if (ghosts) *ghosts = sell->garray;
668d4002b98SHong Zhang   PetscFunctionReturn(0);
669d4002b98SHong Zhang }
670d4002b98SHong Zhang 
671d4002b98SHong Zhang PetscErrorCode MatGetInfo_MPISELL(Mat matin,MatInfoType flag,MatInfo *info)
672d4002b98SHong Zhang {
673d4002b98SHong Zhang   Mat_MPISELL    *mat=(Mat_MPISELL*)matin->data;
674d4002b98SHong Zhang   Mat            A=mat->A,B=mat->B;
6753966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
676d4002b98SHong Zhang 
677d4002b98SHong Zhang   PetscFunctionBegin;
678d4002b98SHong Zhang   info->block_size = 1.0;
6799566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A,MAT_LOCAL,info));
680d4002b98SHong Zhang 
681d4002b98SHong Zhang   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
682d4002b98SHong Zhang   isend[3] = info->memory;  isend[4] = info->mallocs;
683d4002b98SHong Zhang 
6849566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B,MAT_LOCAL,info));
685d4002b98SHong Zhang 
686d4002b98SHong Zhang   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
687d4002b98SHong Zhang   isend[3] += info->memory;  isend[4] += info->mallocs;
688d4002b98SHong Zhang   if (flag == MAT_LOCAL) {
689d4002b98SHong Zhang     info->nz_used      = isend[0];
690d4002b98SHong Zhang     info->nz_allocated = isend[1];
691d4002b98SHong Zhang     info->nz_unneeded  = isend[2];
692d4002b98SHong Zhang     info->memory       = isend[3];
693d4002b98SHong Zhang     info->mallocs      = isend[4];
694d4002b98SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
6951c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin)));
696d4002b98SHong Zhang 
697d4002b98SHong Zhang     info->nz_used      = irecv[0];
698d4002b98SHong Zhang     info->nz_allocated = irecv[1];
699d4002b98SHong Zhang     info->nz_unneeded  = irecv[2];
700d4002b98SHong Zhang     info->memory       = irecv[3];
701d4002b98SHong Zhang     info->mallocs      = irecv[4];
702d4002b98SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
7031c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin)));
704d4002b98SHong Zhang 
705d4002b98SHong Zhang     info->nz_used      = irecv[0];
706d4002b98SHong Zhang     info->nz_allocated = irecv[1];
707d4002b98SHong Zhang     info->nz_unneeded  = irecv[2];
708d4002b98SHong Zhang     info->memory       = irecv[3];
709d4002b98SHong Zhang     info->mallocs      = irecv[4];
710d4002b98SHong Zhang   }
711d4002b98SHong Zhang   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
712d4002b98SHong Zhang   info->fill_ratio_needed = 0;
713d4002b98SHong Zhang   info->factor_mallocs    = 0;
714d4002b98SHong Zhang   PetscFunctionReturn(0);
715d4002b98SHong Zhang }
716d4002b98SHong Zhang 
717d4002b98SHong Zhang PetscErrorCode MatSetOption_MPISELL(Mat A,MatOption op,PetscBool flg)
718d4002b98SHong Zhang {
719d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
720d4002b98SHong Zhang 
721d4002b98SHong Zhang   PetscFunctionBegin;
722d4002b98SHong Zhang   switch (op) {
723d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
724d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
725d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
726d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
727d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
728d4002b98SHong Zhang   case MAT_USE_INODES:
729d4002b98SHong Zhang   case MAT_IGNORE_ZERO_ENTRIES:
730d4002b98SHong Zhang     MatCheckPreallocated(A,1);
7319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
7329566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
733d4002b98SHong Zhang     break;
734d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
735d4002b98SHong Zhang     MatCheckPreallocated(A,1);
736d4002b98SHong Zhang     a->roworiented = flg;
737d4002b98SHong Zhang 
7389566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
7399566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
740d4002b98SHong Zhang     break;
7418c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
742071fcb05SBarry Smith   case MAT_SORTED_FULL:
7439566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
744d4002b98SHong Zhang     break;
745d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
746d4002b98SHong Zhang     a->donotstash = flg;
747d4002b98SHong Zhang     break;
748d4002b98SHong Zhang   case MAT_SPD:
749b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
750d4002b98SHong Zhang     break;
751d4002b98SHong Zhang   case MAT_SYMMETRIC:
752d4002b98SHong Zhang     MatCheckPreallocated(A,1);
7539566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
754d4002b98SHong Zhang     break;
755d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
756d4002b98SHong Zhang     MatCheckPreallocated(A,1);
7579566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
758d4002b98SHong Zhang     break;
759d4002b98SHong Zhang   case MAT_HERMITIAN:
760d4002b98SHong Zhang     MatCheckPreallocated(A,1);
7619566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
762d4002b98SHong Zhang     break;
763d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
764d4002b98SHong Zhang     MatCheckPreallocated(A,1);
7659566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
766d4002b98SHong Zhang     break;
767b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
768b94d7dedSBarry Smith     MatCheckPreallocated(A,1);
769b94d7dedSBarry Smith     PetscCall(MatSetOption(a->A,op,flg));
770b94d7dedSBarry Smith     break;
771d4002b98SHong Zhang   default:
77298921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
773d4002b98SHong Zhang   }
774d4002b98SHong Zhang   PetscFunctionReturn(0);
775d4002b98SHong Zhang }
776d4002b98SHong Zhang 
777d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_MPISELL(Mat mat,Vec ll,Vec rr)
778d4002b98SHong Zhang {
779d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
780d4002b98SHong Zhang   Mat            a=sell->A,b=sell->B;
781d4002b98SHong Zhang   PetscInt       s1,s2,s3;
782d4002b98SHong Zhang 
783d4002b98SHong Zhang   PetscFunctionBegin;
7849566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&s2,&s3));
785d4002b98SHong Zhang   if (rr) {
7869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr,&s1));
78708401ef6SPierre Jolivet     PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
788d4002b98SHong Zhang     /* Overlap communication with computation. */
7899566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD));
790d4002b98SHong Zhang   }
791d4002b98SHong Zhang   if (ll) {
7929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll,&s1));
79308401ef6SPierre Jolivet     PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
7949566063dSJacob Faibussowitsch     PetscCall((*b->ops->diagonalscale)(b,ll,NULL));
795d4002b98SHong Zhang   }
796d4002b98SHong Zhang   /* scale  the diagonal block */
7979566063dSJacob Faibussowitsch   PetscCall((*a->ops->diagonalscale)(a,ll,rr));
798d4002b98SHong Zhang 
799d4002b98SHong Zhang   if (rr) {
800d4002b98SHong Zhang     /* Do a scatter end and then right scale the off-diagonal block */
8019566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD));
8029566063dSJacob Faibussowitsch     PetscCall((*b->ops->diagonalscale)(b,NULL,sell->lvec));
803d4002b98SHong Zhang   }
804d4002b98SHong Zhang   PetscFunctionReturn(0);
805d4002b98SHong Zhang }
806d4002b98SHong Zhang 
807d4002b98SHong Zhang PetscErrorCode MatSetUnfactored_MPISELL(Mat A)
808d4002b98SHong Zhang {
809d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
810d4002b98SHong Zhang 
811d4002b98SHong Zhang   PetscFunctionBegin;
8129566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
813d4002b98SHong Zhang   PetscFunctionReturn(0);
814d4002b98SHong Zhang }
815d4002b98SHong Zhang 
816d4002b98SHong Zhang PetscErrorCode MatEqual_MPISELL(Mat A,Mat B,PetscBool  *flag)
817d4002b98SHong Zhang {
818d4002b98SHong Zhang   Mat_MPISELL    *matB=(Mat_MPISELL*)B->data,*matA=(Mat_MPISELL*)A->data;
819d4002b98SHong Zhang   Mat            a,b,c,d;
820d4002b98SHong Zhang   PetscBool      flg;
821d4002b98SHong Zhang 
822d4002b98SHong Zhang   PetscFunctionBegin;
823d4002b98SHong Zhang   a = matA->A; b = matA->B;
824d4002b98SHong Zhang   c = matB->A; d = matB->B;
825d4002b98SHong Zhang 
8269566063dSJacob Faibussowitsch   PetscCall(MatEqual(a,c,&flg));
827d4002b98SHong Zhang   if (flg) {
8289566063dSJacob Faibussowitsch     PetscCall(MatEqual(b,d,&flg));
829d4002b98SHong Zhang   }
8301c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A)));
831d4002b98SHong Zhang   PetscFunctionReturn(0);
832d4002b98SHong Zhang }
833d4002b98SHong Zhang 
834d4002b98SHong Zhang PetscErrorCode MatCopy_MPISELL(Mat A,Mat B,MatStructure str)
835d4002b98SHong Zhang {
836d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
837d4002b98SHong Zhang   Mat_MPISELL    *b=(Mat_MPISELL*)B->data;
838d4002b98SHong Zhang 
839d4002b98SHong Zhang   PetscFunctionBegin;
840d4002b98SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
841d4002b98SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
842d4002b98SHong Zhang     /* because of the column compression in the off-processor part of the matrix a->B,
843d4002b98SHong Zhang        the number of columns in a->B and b->B may be different, hence we cannot call
844d4002b98SHong Zhang        the MatCopy() directly on the two parts. If need be, we can provide a more
845d4002b98SHong Zhang        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
846d4002b98SHong Zhang        then copying the submatrices */
8479566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
848d4002b98SHong Zhang   } else {
8499566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A,b->A,str));
8509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B,b->B,str));
851d4002b98SHong Zhang   }
852d4002b98SHong Zhang   PetscFunctionReturn(0);
853d4002b98SHong Zhang }
854d4002b98SHong Zhang 
855d4002b98SHong Zhang PetscErrorCode MatSetUp_MPISELL(Mat A)
856d4002b98SHong Zhang {
857d4002b98SHong Zhang   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(MatMPISELLSetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL));
859d4002b98SHong Zhang   PetscFunctionReturn(0);
860d4002b98SHong Zhang }
861d4002b98SHong Zhang 
862d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat);
863d4002b98SHong Zhang 
864d4002b98SHong Zhang PetscErrorCode MatConjugate_MPISELL(Mat mat)
865d4002b98SHong Zhang {
8665f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
8675f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
868d4002b98SHong Zhang     Mat_MPISELL *sell=(Mat_MPISELL*)mat->data;
869d4002b98SHong Zhang 
8709566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqSELL(sell->A));
8719566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqSELL(sell->B));
8725f80ce2aSJacob Faibussowitsch   }
873d4002b98SHong Zhang   PetscFunctionReturn(0);
874d4002b98SHong Zhang }
875d4002b98SHong Zhang 
876d4002b98SHong Zhang PetscErrorCode MatRealPart_MPISELL(Mat A)
877d4002b98SHong Zhang {
878d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
879d4002b98SHong Zhang 
880d4002b98SHong Zhang   PetscFunctionBegin;
8819566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
8829566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
883d4002b98SHong Zhang   PetscFunctionReturn(0);
884d4002b98SHong Zhang }
885d4002b98SHong Zhang 
886d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_MPISELL(Mat A)
887d4002b98SHong Zhang {
888d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
889d4002b98SHong Zhang 
890d4002b98SHong Zhang   PetscFunctionBegin;
8919566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
8929566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
893d4002b98SHong Zhang   PetscFunctionReturn(0);
894d4002b98SHong Zhang }
895d4002b98SHong Zhang 
896d4002b98SHong Zhang PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A,const PetscScalar **values)
897d4002b98SHong Zhang {
898d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
899d4002b98SHong Zhang 
900d4002b98SHong Zhang   PetscFunctionBegin;
9019566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A,values));
902d4002b98SHong Zhang   A->factorerrortype = a->A->factorerrortype;
903d4002b98SHong Zhang   PetscFunctionReturn(0);
904d4002b98SHong Zhang }
905d4002b98SHong Zhang 
906d4002b98SHong Zhang static PetscErrorCode MatSetRandom_MPISELL(Mat x,PetscRandom rctx)
907d4002b98SHong Zhang {
908d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)x->data;
909d4002b98SHong Zhang 
910d4002b98SHong Zhang   PetscFunctionBegin;
9119566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(sell->A,rctx));
9129566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(sell->B,rctx));
9139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x,MAT_FINAL_ASSEMBLY));
9149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x,MAT_FINAL_ASSEMBLY));
915d4002b98SHong Zhang   PetscFunctionReturn(0);
916d4002b98SHong Zhang }
917d4002b98SHong Zhang 
918d4002b98SHong Zhang PetscErrorCode MatSetFromOptions_MPISELL(PetscOptionItems *PetscOptionsObject,Mat A)
919d4002b98SHong Zhang {
920d4002b98SHong Zhang   PetscFunctionBegin;
921d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject,"MPISELL options");
922d0609cedSBarry Smith   PetscOptionsHeadEnd();
923d4002b98SHong Zhang   PetscFunctionReturn(0);
924d4002b98SHong Zhang }
925d4002b98SHong Zhang 
926d4002b98SHong Zhang PetscErrorCode MatShift_MPISELL(Mat Y,PetscScalar a)
927d4002b98SHong Zhang {
928d4002b98SHong Zhang   Mat_MPISELL    *msell=(Mat_MPISELL*)Y->data;
929d4002b98SHong Zhang   Mat_SeqSELL    *sell=(Mat_SeqSELL*)msell->A->data;
930d4002b98SHong Zhang 
931d4002b98SHong Zhang   PetscFunctionBegin;
932d4002b98SHong Zhang   if (!Y->preallocated) {
9339566063dSJacob Faibussowitsch     PetscCall(MatMPISELLSetPreallocation(Y,1,NULL,0,NULL));
934d4002b98SHong Zhang   } else if (!sell->nz) {
935d4002b98SHong Zhang     PetscInt nonew = sell->nonew;
9369566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(msell->A,1,NULL));
937d4002b98SHong Zhang     sell->nonew = nonew;
938d4002b98SHong Zhang   }
9399566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y,a));
940d4002b98SHong Zhang   PetscFunctionReturn(0);
941d4002b98SHong Zhang }
942d4002b98SHong Zhang 
943d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_MPISELL(Mat A,PetscBool  *missing,PetscInt *d)
944d4002b98SHong Zhang {
945d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
946d4002b98SHong Zhang 
947d4002b98SHong Zhang   PetscFunctionBegin;
94808401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
9499566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A,missing,d));
950d4002b98SHong Zhang   if (d) {
951d4002b98SHong Zhang     PetscInt rstart;
9529566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A,&rstart,NULL));
953d4002b98SHong Zhang     *d += rstart;
954d4002b98SHong Zhang 
955d4002b98SHong Zhang   }
956d4002b98SHong Zhang   PetscFunctionReturn(0);
957d4002b98SHong Zhang }
958d4002b98SHong Zhang 
959d4002b98SHong Zhang PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A,Mat *a)
960d4002b98SHong Zhang {
961d4002b98SHong Zhang   PetscFunctionBegin;
962d4002b98SHong Zhang   *a = ((Mat_MPISELL*)A->data)->A;
963d4002b98SHong Zhang   PetscFunctionReturn(0);
964d4002b98SHong Zhang }
965d4002b98SHong Zhang 
966d4002b98SHong Zhang /* -------------------------------------------------------------------*/
967d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL,
968f4259b30SLisandro Dalcin                                        NULL,
969f4259b30SLisandro Dalcin                                        NULL,
970d4002b98SHong Zhang                                        MatMult_MPISELL,
971d4002b98SHong Zhang                                 /* 4*/ MatMultAdd_MPISELL,
972d4002b98SHong Zhang                                        MatMultTranspose_MPISELL,
973d4002b98SHong Zhang                                        MatMultTransposeAdd_MPISELL,
974f4259b30SLisandro Dalcin                                        NULL,
975f4259b30SLisandro Dalcin                                        NULL,
976f4259b30SLisandro Dalcin                                        NULL,
977f4259b30SLisandro Dalcin                                 /*10*/ NULL,
978f4259b30SLisandro Dalcin                                        NULL,
979f4259b30SLisandro Dalcin                                        NULL,
980d4002b98SHong Zhang                                        MatSOR_MPISELL,
981f4259b30SLisandro Dalcin                                        NULL,
982d4002b98SHong Zhang                                 /*15*/ MatGetInfo_MPISELL,
983d4002b98SHong Zhang                                        MatEqual_MPISELL,
984d4002b98SHong Zhang                                        MatGetDiagonal_MPISELL,
985d4002b98SHong Zhang                                        MatDiagonalScale_MPISELL,
986f4259b30SLisandro Dalcin                                        NULL,
987d4002b98SHong Zhang                                 /*20*/ MatAssemblyBegin_MPISELL,
988d4002b98SHong Zhang                                        MatAssemblyEnd_MPISELL,
989d4002b98SHong Zhang                                        MatSetOption_MPISELL,
990d4002b98SHong Zhang                                        MatZeroEntries_MPISELL,
991f4259b30SLisandro Dalcin                                 /*24*/ NULL,
992f4259b30SLisandro Dalcin                                        NULL,
993f4259b30SLisandro Dalcin                                        NULL,
994f4259b30SLisandro Dalcin                                        NULL,
995f4259b30SLisandro Dalcin                                        NULL,
996d4002b98SHong Zhang                                 /*29*/ MatSetUp_MPISELL,
997f4259b30SLisandro Dalcin                                        NULL,
998f4259b30SLisandro Dalcin                                        NULL,
999d4002b98SHong Zhang                                        MatGetDiagonalBlock_MPISELL,
1000f4259b30SLisandro Dalcin                                        NULL,
1001d4002b98SHong Zhang                                 /*34*/ MatDuplicate_MPISELL,
1002f4259b30SLisandro Dalcin                                        NULL,
1003f4259b30SLisandro Dalcin                                        NULL,
1004f4259b30SLisandro Dalcin                                        NULL,
1005f4259b30SLisandro Dalcin                                        NULL,
1006f4259b30SLisandro Dalcin                                 /*39*/ NULL,
1007f4259b30SLisandro Dalcin                                        NULL,
1008f4259b30SLisandro Dalcin                                        NULL,
1009d4002b98SHong Zhang                                        MatGetValues_MPISELL,
1010d4002b98SHong Zhang                                        MatCopy_MPISELL,
1011f4259b30SLisandro Dalcin                                 /*44*/ NULL,
1012d4002b98SHong Zhang                                        MatScale_MPISELL,
1013d4002b98SHong Zhang                                        MatShift_MPISELL,
1014d4002b98SHong Zhang                                        MatDiagonalSet_MPISELL,
1015f4259b30SLisandro Dalcin                                        NULL,
1016d4002b98SHong Zhang                                 /*49*/ MatSetRandom_MPISELL,
1017f4259b30SLisandro Dalcin                                        NULL,
1018f4259b30SLisandro Dalcin                                        NULL,
1019f4259b30SLisandro Dalcin                                        NULL,
1020f4259b30SLisandro Dalcin                                        NULL,
1021d4002b98SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
1022f4259b30SLisandro Dalcin                                        NULL,
1023d4002b98SHong Zhang                                        MatSetUnfactored_MPISELL,
1024f4259b30SLisandro Dalcin                                        NULL,
1025f4259b30SLisandro Dalcin                                        NULL,
1026f4259b30SLisandro Dalcin                                 /*59*/ NULL,
1027d4002b98SHong Zhang                                        MatDestroy_MPISELL,
1028d4002b98SHong Zhang                                        MatView_MPISELL,
1029f4259b30SLisandro Dalcin                                        NULL,
1030f4259b30SLisandro Dalcin                                        NULL,
1031f4259b30SLisandro Dalcin                                 /*64*/ NULL,
1032f4259b30SLisandro Dalcin                                        NULL,
1033f4259b30SLisandro Dalcin                                        NULL,
1034f4259b30SLisandro Dalcin                                        NULL,
1035f4259b30SLisandro Dalcin                                        NULL,
1036f4259b30SLisandro Dalcin                                 /*69*/ NULL,
1037f4259b30SLisandro Dalcin                                        NULL,
1038f4259b30SLisandro Dalcin                                        NULL,
1039f4259b30SLisandro Dalcin                                        NULL,
1040f4259b30SLisandro Dalcin                                        NULL,
1041f4259b30SLisandro Dalcin                                        NULL,
1042d4002b98SHong Zhang                                 /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */
1043d4002b98SHong Zhang                                        MatSetFromOptions_MPISELL,
1044f4259b30SLisandro Dalcin                                        NULL,
1045f4259b30SLisandro Dalcin                                        NULL,
1046f4259b30SLisandro Dalcin                                        NULL,
1047f4259b30SLisandro Dalcin                                 /*80*/ NULL,
1048f4259b30SLisandro Dalcin                                        NULL,
1049f4259b30SLisandro Dalcin                                        NULL,
1050f4259b30SLisandro Dalcin                                 /*83*/ NULL,
1051f4259b30SLisandro Dalcin                                        NULL,
1052f4259b30SLisandro Dalcin                                        NULL,
1053f4259b30SLisandro Dalcin                                        NULL,
1054f4259b30SLisandro Dalcin                                        NULL,
1055f4259b30SLisandro Dalcin                                        NULL,
1056f4259b30SLisandro Dalcin                                 /*89*/ NULL,
1057f4259b30SLisandro Dalcin                                        NULL,
1058f4259b30SLisandro Dalcin                                        NULL,
1059f4259b30SLisandro Dalcin                                        NULL,
1060f4259b30SLisandro Dalcin                                        NULL,
1061f4259b30SLisandro Dalcin                                 /*94*/ NULL,
1062f4259b30SLisandro Dalcin                                        NULL,
1063f4259b30SLisandro Dalcin                                        NULL,
1064f4259b30SLisandro Dalcin                                        NULL,
1065f4259b30SLisandro Dalcin                                        NULL,
1066f4259b30SLisandro Dalcin                                 /*99*/ NULL,
1067f4259b30SLisandro Dalcin                                        NULL,
1068f4259b30SLisandro Dalcin                                        NULL,
1069d4002b98SHong Zhang                                        MatConjugate_MPISELL,
1070f4259b30SLisandro Dalcin                                        NULL,
1071f4259b30SLisandro Dalcin                                 /*104*/NULL,
1072d4002b98SHong Zhang                                        MatRealPart_MPISELL,
1073d4002b98SHong Zhang                                        MatImaginaryPart_MPISELL,
1074f4259b30SLisandro Dalcin                                        NULL,
1075f4259b30SLisandro Dalcin                                        NULL,
1076f4259b30SLisandro Dalcin                                 /*109*/NULL,
1077f4259b30SLisandro Dalcin                                        NULL,
1078f4259b30SLisandro Dalcin                                        NULL,
1079f4259b30SLisandro Dalcin                                        NULL,
1080d4002b98SHong Zhang                                        MatMissingDiagonal_MPISELL,
1081f4259b30SLisandro Dalcin                                 /*114*/NULL,
1082f4259b30SLisandro Dalcin                                        NULL,
1083d4002b98SHong Zhang                                        MatGetGhosts_MPISELL,
1084f4259b30SLisandro Dalcin                                        NULL,
1085f4259b30SLisandro Dalcin                                        NULL,
1086f4259b30SLisandro Dalcin                                 /*119*/NULL,
1087f4259b30SLisandro Dalcin                                        NULL,
1088f4259b30SLisandro Dalcin                                        NULL,
1089f4259b30SLisandro Dalcin                                        NULL,
1090f4259b30SLisandro Dalcin                                        NULL,
1091f4259b30SLisandro Dalcin                                 /*124*/NULL,
1092f4259b30SLisandro Dalcin                                        NULL,
1093d4002b98SHong Zhang                                        MatInvertBlockDiagonal_MPISELL,
1094f4259b30SLisandro Dalcin                                        NULL,
1095f4259b30SLisandro Dalcin                                        NULL,
1096f4259b30SLisandro Dalcin                                 /*129*/NULL,
1097f4259b30SLisandro Dalcin                                        NULL,
1098f4259b30SLisandro Dalcin                                        NULL,
1099f4259b30SLisandro Dalcin                                        NULL,
1100f4259b30SLisandro Dalcin                                        NULL,
1101f4259b30SLisandro Dalcin                                 /*134*/NULL,
1102f4259b30SLisandro Dalcin                                        NULL,
1103f4259b30SLisandro Dalcin                                        NULL,
1104f4259b30SLisandro Dalcin                                        NULL,
1105f4259b30SLisandro Dalcin                                        NULL,
1106f4259b30SLisandro Dalcin                                 /*139*/NULL,
1107f4259b30SLisandro Dalcin                                        NULL,
1108f4259b30SLisandro Dalcin                                        NULL,
1109d4002b98SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
1110f4259b30SLisandro Dalcin                                        NULL,
1111d70f29a3SPierre Jolivet                                 /*144*/NULL,
1112d70f29a3SPierre Jolivet                                        NULL,
1113d70f29a3SPierre Jolivet                                        NULL,
111499a7f59eSMark Adams                                        NULL,
111599a7f59eSMark Adams                                        NULL,
11167fb60732SBarry Smith                                        NULL,
11177fb60732SBarry Smith                                 /*150*/NULL
1118d4002b98SHong Zhang };
1119d4002b98SHong Zhang 
1120d4002b98SHong Zhang /* ----------------------------------------------------------------------------------------*/
1121d4002b98SHong Zhang 
1122d4002b98SHong Zhang PetscErrorCode MatStoreValues_MPISELL(Mat mat)
1123d4002b98SHong Zhang {
1124d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
1125d4002b98SHong Zhang 
1126d4002b98SHong Zhang   PetscFunctionBegin;
11279566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(sell->A));
11289566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(sell->B));
1129d4002b98SHong Zhang   PetscFunctionReturn(0);
1130d4002b98SHong Zhang }
1131d4002b98SHong Zhang 
1132d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_MPISELL(Mat mat)
1133d4002b98SHong Zhang {
1134d4002b98SHong Zhang   Mat_MPISELL    *sell=(Mat_MPISELL*)mat->data;
1135d4002b98SHong Zhang 
1136d4002b98SHong Zhang   PetscFunctionBegin;
11379566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(sell->A));
11389566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(sell->B));
1139d4002b98SHong Zhang   PetscFunctionReturn(0);
1140d4002b98SHong Zhang }
1141d4002b98SHong Zhang 
1142d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[])
1143d4002b98SHong Zhang {
1144d4002b98SHong Zhang   Mat_MPISELL    *b;
1145d4002b98SHong Zhang 
1146d4002b98SHong Zhang   PetscFunctionBegin;
11479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
11489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
1149d4002b98SHong Zhang   b = (Mat_MPISELL*)B->data;
1150d4002b98SHong Zhang 
1151d4002b98SHong Zhang   if (!B->preallocated) {
1152d4002b98SHong Zhang     /* Explicitly create 2 MATSEQSELL matrices. */
11539566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&b->A));
11549566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n));
11559566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(b->A,B,B));
11569566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A,MATSEQSELL));
11579566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A));
11589566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&b->B));
11599566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N));
11609566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(b->B,B,B));
11619566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->B,MATSEQSELL));
11629566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B));
1163d4002b98SHong Zhang   }
1164d4002b98SHong Zhang 
11659566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(b->A,d_rlenmax,d_rlen));
11669566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(b->B,o_rlenmax,o_rlen));
1167d4002b98SHong Zhang   B->preallocated  = PETSC_TRUE;
1168d4002b98SHong Zhang   B->was_assembled = PETSC_FALSE;
1169d4002b98SHong Zhang   /*
1170d4002b98SHong Zhang     critical for MatAssemblyEnd to work.
1171d4002b98SHong Zhang     MatAssemblyBegin checks it to set up was_assembled
1172d4002b98SHong Zhang     and MatAssemblyEnd checks was_assembled to determine whether to build garray
1173d4002b98SHong Zhang   */
1174d4002b98SHong Zhang   B->assembled     = PETSC_FALSE;
1175d4002b98SHong Zhang   PetscFunctionReturn(0);
1176d4002b98SHong Zhang }
1177d4002b98SHong Zhang 
1178d4002b98SHong Zhang PetscErrorCode MatDuplicate_MPISELL(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1179d4002b98SHong Zhang {
1180d4002b98SHong Zhang   Mat            mat;
1181d4002b98SHong Zhang   Mat_MPISELL    *a,*oldmat=(Mat_MPISELL*)matin->data;
1182d4002b98SHong Zhang 
1183d4002b98SHong Zhang   PetscFunctionBegin;
1184f4259b30SLisandro Dalcin   *newmat = NULL;
11859566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat));
11869566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N));
11879566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat,matin,matin));
11889566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat,((PetscObject)matin)->type_name));
1189d4002b98SHong Zhang   a       = (Mat_MPISELL*)mat->data;
1190d4002b98SHong Zhang 
1191d4002b98SHong Zhang   mat->factortype   = matin->factortype;
1192d4002b98SHong Zhang   mat->assembled    = PETSC_TRUE;
1193d4002b98SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
1194d4002b98SHong Zhang   mat->preallocated = PETSC_TRUE;
1195d4002b98SHong Zhang 
1196d4002b98SHong Zhang   a->size         = oldmat->size;
1197d4002b98SHong Zhang   a->rank         = oldmat->rank;
1198d4002b98SHong Zhang   a->donotstash   = oldmat->donotstash;
1199d4002b98SHong Zhang   a->roworiented  = oldmat->roworiented;
1200f4259b30SLisandro Dalcin   a->rowindices   = NULL;
1201f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
1202d4002b98SHong Zhang   a->getrowactive = PETSC_FALSE;
1203d4002b98SHong Zhang 
12049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap));
12059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap));
1206d4002b98SHong Zhang 
1207d4002b98SHong Zhang   if (oldmat->colmap) {
1208d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
12099566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap));
1210d4002b98SHong Zhang #else
12119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(mat->cmap->N,&a->colmap));
12129566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N)*sizeof(PetscInt)));
12139566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,mat->cmap->N));
1214d4002b98SHong Zhang #endif
1215f4259b30SLisandro Dalcin   } else a->colmap = NULL;
1216d4002b98SHong Zhang   if (oldmat->garray) {
1217d4002b98SHong Zhang     PetscInt len;
1218d4002b98SHong Zhang     len  = oldmat->B->cmap->n;
12199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len+1,&a->garray));
12209566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt)));
12219566063dSJacob Faibussowitsch     if (len) PetscCall(PetscArraycpy(a->garray,oldmat->garray,len));
1222f4259b30SLisandro Dalcin   } else a->garray = NULL;
1223d4002b98SHong Zhang 
12249566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec,&a->lvec));
12259566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec));
12269566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx));
12279566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx));
12289566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A));
12299566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A));
12309566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B));
12319566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B));
12329566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist));
1233d4002b98SHong Zhang   *newmat = mat;
1234d4002b98SHong Zhang   PetscFunctionReturn(0);
1235d4002b98SHong Zhang }
1236d4002b98SHong Zhang 
1237d4002b98SHong Zhang /*@C
1238d4002b98SHong Zhang    MatMPISELLSetPreallocation - Preallocates memory for a sparse parallel matrix in sell format.
1239d4002b98SHong Zhang    For good matrix assembly performance the user should preallocate the matrix storage by
1240d4002b98SHong Zhang    setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz).
1241d4002b98SHong Zhang 
1242d083f849SBarry Smith    Collective
1243d4002b98SHong Zhang 
1244d4002b98SHong Zhang    Input Parameters:
1245d4002b98SHong Zhang +  B - the matrix
1246d4002b98SHong Zhang .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
1247d4002b98SHong Zhang            (same value is used for all local rows)
1248d4002b98SHong Zhang .  d_nnz - array containing the number of nonzeros in the various rows of the
1249d4002b98SHong Zhang            DIAGONAL portion of the local submatrix (possibly different for each row)
1250d4002b98SHong Zhang            or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure.
1251d4002b98SHong Zhang            The size of this array is equal to the number of local rows, i.e 'm'.
1252d4002b98SHong Zhang            For matrices that will be factored, you must leave room for (and set)
1253d4002b98SHong Zhang            the diagonal entry even if it is zero.
1254d4002b98SHong Zhang .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
1255d4002b98SHong Zhang            submatrix (same value is used for all local rows).
1256d4002b98SHong Zhang -  o_nnz - array containing the number of nonzeros in the various rows of the
1257d4002b98SHong Zhang            OFF-DIAGONAL portion of the local submatrix (possibly different for
1258d4002b98SHong Zhang            each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero
1259d4002b98SHong Zhang            structure. The size of this array is equal to the number
1260d4002b98SHong Zhang            of local rows, i.e 'm'.
1261d4002b98SHong Zhang 
1262d4002b98SHong Zhang    If the *_nnz parameter is given then the *_nz parameter is ignored
1263d4002b98SHong Zhang 
1264d4002b98SHong Zhang    The stored row and column indices begin with zero.
1265d4002b98SHong Zhang 
1266d4002b98SHong Zhang    The parallel matrix is partitioned such that the first m0 rows belong to
1267d4002b98SHong Zhang    process 0, the next m1 rows belong to process 1, the next m2 rows belong
1268d4002b98SHong Zhang    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
1269d4002b98SHong Zhang 
1270d4002b98SHong Zhang    The DIAGONAL portion of the local submatrix of a processor can be defined
1271d4002b98SHong Zhang    as the submatrix which is obtained by extraction the part corresponding to
1272d4002b98SHong Zhang    the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
1273d4002b98SHong Zhang    first row that belongs to the processor, r2 is the last row belonging to
1274d4002b98SHong Zhang    the this processor, and c1-c2 is range of indices of the local part of a
1275d4002b98SHong Zhang    vector suitable for applying the matrix to.  This is an mxn matrix.  In the
1276d4002b98SHong Zhang    common case of a square matrix, the row and column ranges are the same and
1277d4002b98SHong Zhang    the DIAGONAL part is also square. The remaining portion of the local
1278d4002b98SHong Zhang    submatrix (mxN) constitute the OFF-DIAGONAL portion.
1279d4002b98SHong Zhang 
1280d4002b98SHong Zhang    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
1281d4002b98SHong Zhang 
1282d4002b98SHong Zhang    You can call MatGetInfo() to get information on how effective the preallocation was;
1283d4002b98SHong Zhang    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
1284d4002b98SHong Zhang    You can also run with the option -info and look for messages with the string
1285d4002b98SHong Zhang    malloc in them to see if additional memory allocation was needed.
1286d4002b98SHong Zhang 
1287d4002b98SHong Zhang    Example usage:
1288d4002b98SHong Zhang 
1289d4002b98SHong Zhang    Consider the following 8x8 matrix with 34 non-zero values, that is
1290d4002b98SHong Zhang    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
1291d4002b98SHong Zhang    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
1292d4002b98SHong Zhang    as follows:
1293d4002b98SHong Zhang 
1294d4002b98SHong Zhang .vb
1295d4002b98SHong Zhang             1  2  0  |  0  3  0  |  0  4
1296d4002b98SHong Zhang     Proc0   0  5  6  |  7  0  0  |  8  0
1297d4002b98SHong Zhang             9  0 10  | 11  0  0  | 12  0
1298d4002b98SHong Zhang     -------------------------------------
1299d4002b98SHong Zhang            13  0 14  | 15 16 17  |  0  0
1300d4002b98SHong Zhang     Proc1   0 18  0  | 19 20 21  |  0  0
1301d4002b98SHong Zhang             0  0  0  | 22 23  0  | 24  0
1302d4002b98SHong Zhang     -------------------------------------
1303d4002b98SHong Zhang     Proc2  25 26 27  |  0  0 28  | 29  0
1304d4002b98SHong Zhang            30  0  0  | 31 32 33  |  0 34
1305d4002b98SHong Zhang .ve
1306d4002b98SHong Zhang 
1307d4002b98SHong Zhang    This can be represented as a collection of submatrices as:
1308d4002b98SHong Zhang 
1309d4002b98SHong Zhang .vb
1310d4002b98SHong Zhang       A B C
1311d4002b98SHong Zhang       D E F
1312d4002b98SHong Zhang       G H I
1313d4002b98SHong Zhang .ve
1314d4002b98SHong Zhang 
1315d4002b98SHong Zhang    Where the submatrices A,B,C are owned by proc0, D,E,F are
1316d4002b98SHong Zhang    owned by proc1, G,H,I are owned by proc2.
1317d4002b98SHong Zhang 
1318d4002b98SHong Zhang    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1319d4002b98SHong Zhang    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1320d4002b98SHong Zhang    The 'M','N' parameters are 8,8, and have the same values on all procs.
1321d4002b98SHong Zhang 
1322d4002b98SHong Zhang    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
1323d4002b98SHong Zhang    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
1324d4002b98SHong Zhang    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
1325d4002b98SHong Zhang    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
1326d4002b98SHong Zhang    part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL
1327d4002b98SHong Zhang    matrix, ans [DF] as another SeqSELL matrix.
1328d4002b98SHong Zhang 
1329d4002b98SHong Zhang    When d_nz, o_nz parameters are specified, d_nz storage elements are
1330d4002b98SHong Zhang    allocated for every row of the local diagonal submatrix, and o_nz
1331d4002b98SHong Zhang    storage locations are allocated for every row of the OFF-DIAGONAL submat.
1332d4002b98SHong Zhang    One way to choose d_nz and o_nz is to use the max nonzerors per local
1333d4002b98SHong Zhang    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
1334d4002b98SHong Zhang    In this case, the values of d_nz,o_nz are:
1335d4002b98SHong Zhang .vb
1336d4002b98SHong Zhang      proc0 : dnz = 2, o_nz = 2
1337d4002b98SHong Zhang      proc1 : dnz = 3, o_nz = 2
1338d4002b98SHong Zhang      proc2 : dnz = 1, o_nz = 4
1339d4002b98SHong Zhang .ve
1340d4002b98SHong Zhang    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
1341d4002b98SHong Zhang    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
1342d4002b98SHong Zhang    for proc3. i.e we are using 12+15+10=37 storage locations to store
1343d4002b98SHong Zhang    34 values.
1344d4002b98SHong Zhang 
1345d4002b98SHong Zhang    When d_nnz, o_nnz parameters are specified, the storage is specified
1346a5b23f4aSJose E. Roman    for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
1347d4002b98SHong Zhang    In the above case the values for d_nnz,o_nnz are:
1348d4002b98SHong Zhang .vb
1349d4002b98SHong Zhang      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
1350d4002b98SHong Zhang      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
1351d4002b98SHong Zhang      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
1352d4002b98SHong Zhang .ve
1353d4002b98SHong Zhang    Here the space allocated is according to nz (or maximum values in the nnz
1354d4002b98SHong Zhang    if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37
1355d4002b98SHong Zhang 
1356d4002b98SHong Zhang    Level: intermediate
1357d4002b98SHong Zhang 
1358db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`,
1359db781477SPatrick Sanan           `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`
1360d4002b98SHong Zhang @*/
1361d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
1362d4002b98SHong Zhang {
1363d4002b98SHong Zhang   PetscFunctionBegin;
1364d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
1365d4002b98SHong Zhang   PetscValidType(B,1);
1366cac4c232SBarry Smith   PetscTryMethod(B,"MatMPISELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,d_nz,d_nnz,o_nz,o_nnz));
1367d4002b98SHong Zhang   PetscFunctionReturn(0);
1368d4002b98SHong Zhang }
1369d4002b98SHong Zhang 
1370ed73aabaSBarry Smith /*MC
1371ed73aabaSBarry Smith    MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices,
1372ed73aabaSBarry Smith    based on the sliced Ellpack format
1373ed73aabaSBarry Smith 
1374ed73aabaSBarry Smith    Options Database Keys:
1375ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "seqsell" during a call to MatSetFromOptions()
1376ed73aabaSBarry Smith 
1377ed73aabaSBarry Smith    Level: beginner
1378ed73aabaSBarry Smith 
1379db781477SPatrick Sanan .seealso: `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
1380ed73aabaSBarry Smith M*/
1381ed73aabaSBarry Smith 
1382d4002b98SHong Zhang /*@C
1383d4002b98SHong Zhang    MatCreateSELL - Creates a sparse parallel matrix in SELL format.
1384d4002b98SHong Zhang 
1385d083f849SBarry Smith    Collective
1386d4002b98SHong Zhang 
1387d4002b98SHong Zhang    Input Parameters:
1388d4002b98SHong Zhang +  comm - MPI communicator
1389d4002b98SHong Zhang .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1390d4002b98SHong Zhang            This value should be the same as the local size used in creating the
1391d4002b98SHong Zhang            y vector for the matrix-vector product y = Ax.
1392d4002b98SHong Zhang .  n - This value should be the same as the local size used in creating the
1393d4002b98SHong Zhang        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
1394d4002b98SHong Zhang        calculated if N is given) For square matrices n is almost always m.
1395d4002b98SHong Zhang .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1396d4002b98SHong Zhang .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
1397d4002b98SHong Zhang .  d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix
1398d4002b98SHong Zhang                (same value is used for all local rows)
1399d4002b98SHong Zhang .  d_rlen - array containing the number of nonzeros in the various rows of the
1400d4002b98SHong Zhang             DIAGONAL portion of the local submatrix (possibly different for each row)
1401d4002b98SHong Zhang             or NULL, if d_rlenmax is used to specify the nonzero structure.
1402d4002b98SHong Zhang             The size of this array is equal to the number of local rows, i.e 'm'.
1403d4002b98SHong Zhang .  o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local
1404d4002b98SHong Zhang                submatrix (same value is used for all local rows).
1405d4002b98SHong Zhang -  o_rlen - array containing the number of nonzeros in the various rows of the
1406d4002b98SHong Zhang             OFF-DIAGONAL portion of the local submatrix (possibly different for
1407d4002b98SHong Zhang             each row) or NULL, if o_rlenmax is used to specify the nonzero
1408d4002b98SHong Zhang             structure. The size of this array is equal to the number
1409d4002b98SHong Zhang             of local rows, i.e 'm'.
1410d4002b98SHong Zhang 
1411d4002b98SHong Zhang    Output Parameter:
1412d4002b98SHong Zhang .  A - the matrix
1413d4002b98SHong Zhang 
1414d4002b98SHong Zhang    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1415f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
1416d4002b98SHong Zhang    [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
1417d4002b98SHong Zhang 
1418d4002b98SHong Zhang    Notes:
1419d4002b98SHong Zhang    If the *_rlen parameter is given then the *_rlenmax parameter is ignored
1420d4002b98SHong Zhang 
1421d4002b98SHong Zhang    m,n,M,N parameters specify the size of the matrix, and its partitioning across
1422d4002b98SHong Zhang    processors, while d_rlenmax,d_rlen,o_rlenmax,o_rlen parameters specify the approximate
1423d4002b98SHong Zhang    storage requirements for this matrix.
1424d4002b98SHong Zhang 
1425d4002b98SHong Zhang    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one
1426d4002b98SHong Zhang    processor than it must be used on all processors that share the object for
1427d4002b98SHong Zhang    that argument.
1428d4002b98SHong Zhang 
1429d4002b98SHong Zhang    The user MUST specify either the local or global matrix dimensions
1430d4002b98SHong Zhang    (possibly both).
1431d4002b98SHong Zhang 
1432d4002b98SHong Zhang    The parallel matrix is partitioned across processors such that the
1433d4002b98SHong Zhang    first m0 rows belong to process 0, the next m1 rows belong to
1434d4002b98SHong Zhang    process 1, the next m2 rows belong to process 2 etc.. where
1435d4002b98SHong Zhang    m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
1436d4002b98SHong Zhang    values corresponding to [m x N] submatrix.
1437d4002b98SHong Zhang 
1438d4002b98SHong Zhang    The columns are logically partitioned with the n0 columns belonging
1439d4002b98SHong Zhang    to 0th partition, the next n1 columns belonging to the next
1440d4002b98SHong Zhang    partition etc.. where n0,n1,n2... are the input parameter 'n'.
1441d4002b98SHong Zhang 
1442d4002b98SHong Zhang    The DIAGONAL portion of the local submatrix on any given processor
1443d4002b98SHong Zhang    is the submatrix corresponding to the rows and columns m,n
1444d4002b98SHong Zhang    corresponding to the given processor. i.e diagonal matrix on
1445d4002b98SHong Zhang    process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
1446d4002b98SHong Zhang    etc. The remaining portion of the local submatrix [m x (N-n)]
1447d4002b98SHong Zhang    constitute the OFF-DIAGONAL portion. The example below better
1448d4002b98SHong Zhang    illustrates this concept.
1449d4002b98SHong Zhang 
1450d4002b98SHong Zhang    For a square global matrix we define each processor's diagonal portion
1451d4002b98SHong Zhang    to be its local rows and the corresponding columns (a square submatrix);
1452d4002b98SHong Zhang    each processor's off-diagonal portion encompasses the remainder of the
1453d4002b98SHong Zhang    local matrix (a rectangular submatrix).
1454d4002b98SHong Zhang 
1455d4002b98SHong Zhang    If o_rlen, d_rlen are specified, then o_rlenmax, and d_rlenmax are ignored.
1456d4002b98SHong Zhang 
1457d4002b98SHong Zhang    When calling this routine with a single process communicator, a matrix of
1458d4002b98SHong Zhang    type SEQSELL is returned.  If a matrix of type MATMPISELL is desired for this
1459d4002b98SHong Zhang    type of communicator, use the construction mechanism:
1460d4002b98SHong Zhang      MatCreate(...,&A); MatSetType(A,MATMPISELL); MatSetSizes(A, m,n,M,N); MatMPISELLSetPreallocation(A,...);
1461d4002b98SHong Zhang 
1462d4002b98SHong Zhang    Options Database Keys:
1463d4002b98SHong Zhang -  -mat_sell_oneindex - Internally use indexing starting at 1
1464d4002b98SHong Zhang         rather than 0.  Note that when calling MatSetValues(),
1465d4002b98SHong Zhang         the user still MUST index entries starting at 0!
1466d4002b98SHong Zhang 
1467d4002b98SHong Zhang    Example usage:
1468d4002b98SHong Zhang 
1469d4002b98SHong Zhang    Consider the following 8x8 matrix with 34 non-zero values, that is
1470d4002b98SHong Zhang    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
1471d4002b98SHong Zhang    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
1472d4002b98SHong Zhang    as follows:
1473d4002b98SHong Zhang 
1474d4002b98SHong Zhang .vb
1475d4002b98SHong Zhang             1  2  0  |  0  3  0  |  0  4
1476d4002b98SHong Zhang     Proc0   0  5  6  |  7  0  0  |  8  0
1477d4002b98SHong Zhang             9  0 10  | 11  0  0  | 12  0
1478d4002b98SHong Zhang     -------------------------------------
1479d4002b98SHong Zhang            13  0 14  | 15 16 17  |  0  0
1480d4002b98SHong Zhang     Proc1   0 18  0  | 19 20 21  |  0  0
1481d4002b98SHong Zhang             0  0  0  | 22 23  0  | 24  0
1482d4002b98SHong Zhang     -------------------------------------
1483d4002b98SHong Zhang     Proc2  25 26 27  |  0  0 28  | 29  0
1484d4002b98SHong Zhang            30  0  0  | 31 32 33  |  0 34
1485d4002b98SHong Zhang .ve
1486d4002b98SHong Zhang 
1487d4002b98SHong Zhang    This can be represented as a collection of submatrices as:
1488d4002b98SHong Zhang 
1489d4002b98SHong Zhang .vb
1490d4002b98SHong Zhang       A B C
1491d4002b98SHong Zhang       D E F
1492d4002b98SHong Zhang       G H I
1493d4002b98SHong Zhang .ve
1494d4002b98SHong Zhang 
1495d4002b98SHong Zhang    Where the submatrices A,B,C are owned by proc0, D,E,F are
1496d4002b98SHong Zhang    owned by proc1, G,H,I are owned by proc2.
1497d4002b98SHong Zhang 
1498d4002b98SHong Zhang    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1499d4002b98SHong Zhang    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1500d4002b98SHong Zhang    The 'M','N' parameters are 8,8, and have the same values on all procs.
1501d4002b98SHong Zhang 
1502d4002b98SHong Zhang    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
1503d4002b98SHong Zhang    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
1504d4002b98SHong Zhang    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
1505d4002b98SHong Zhang    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
1506d4002b98SHong Zhang    part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL
1507d4002b98SHong Zhang    matrix, ans [DF] as another SeqSELL matrix.
1508d4002b98SHong Zhang 
1509d4002b98SHong Zhang    When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are
1510d4002b98SHong Zhang    allocated for every row of the local diagonal submatrix, and o_rlenmax
1511d4002b98SHong Zhang    storage locations are allocated for every row of the OFF-DIAGONAL submat.
1512d4002b98SHong Zhang    One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local
1513d4002b98SHong Zhang    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
1514d4002b98SHong Zhang    In this case, the values of d_rlenmax,o_rlenmax are:
1515d4002b98SHong Zhang .vb
1516d4002b98SHong Zhang      proc0 : d_rlenmax = 2, o_rlenmax = 2
1517d4002b98SHong Zhang      proc1 : d_rlenmax = 3, o_rlenmax = 2
1518d4002b98SHong Zhang      proc2 : d_rlenmax = 1, o_rlenmax = 4
1519d4002b98SHong Zhang .ve
1520d4002b98SHong Zhang    We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This
1521d4002b98SHong Zhang    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
1522d4002b98SHong Zhang    for proc3. i.e we are using 12+15+10=37 storage locations to store
1523d4002b98SHong Zhang    34 values.
1524d4002b98SHong Zhang 
1525d4002b98SHong Zhang    When d_rlen, o_rlen parameters are specified, the storage is specified
1526a5b23f4aSJose E. Roman    for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
1527d4002b98SHong Zhang    In the above case the values for d_nnz,o_nnz are:
1528d4002b98SHong Zhang .vb
1529d4002b98SHong Zhang      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
1530d4002b98SHong Zhang      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
1531d4002b98SHong Zhang      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
1532d4002b98SHong Zhang .ve
1533d4002b98SHong Zhang    Here the space allocated is still 37 though there are 34 nonzeros because
1534d4002b98SHong Zhang    the allocation is always done according to rlenmax.
1535d4002b98SHong Zhang 
1536d4002b98SHong Zhang    Level: intermediate
1537d4002b98SHong Zhang 
1538db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`,
1539db781477SPatrick Sanan           `MATMPISELL`, `MatCreateMPISELLWithArrays()`
1540d4002b98SHong Zhang @*/
1541d4002b98SHong Zhang PetscErrorCode MatCreateSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[],Mat *A)
1542d4002b98SHong Zhang {
1543d4002b98SHong Zhang   PetscMPIInt    size;
1544d4002b98SHong Zhang 
1545d4002b98SHong Zhang   PetscFunctionBegin;
15469566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
15479566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,M,N));
15489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
1549d4002b98SHong Zhang   if (size > 1) {
15509566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATMPISELL));
15519566063dSJacob Faibussowitsch     PetscCall(MatMPISELLSetPreallocation(*A,d_rlenmax,d_rlen,o_rlenmax,o_rlen));
1552d4002b98SHong Zhang   } else {
15539566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATSEQSELL));
15549566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(*A,d_rlenmax,d_rlen));
1555d4002b98SHong Zhang   }
1556d4002b98SHong Zhang   PetscFunctionReturn(0);
1557d4002b98SHong Zhang }
1558d4002b98SHong Zhang 
1559d4002b98SHong Zhang PetscErrorCode MatMPISELLGetSeqSELL(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
1560d4002b98SHong Zhang {
1561d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
1562d4002b98SHong Zhang   PetscBool      flg;
1563d4002b98SHong Zhang 
1564d4002b98SHong Zhang   PetscFunctionBegin;
15659566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&flg));
156628b400f6SJacob Faibussowitsch   PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPISELL matrix as input");
1567d4002b98SHong Zhang   if (Ad)     *Ad     = a->A;
1568d4002b98SHong Zhang   if (Ao)     *Ao     = a->B;
1569d4002b98SHong Zhang   if (colmap) *colmap = a->garray;
1570d4002b98SHong Zhang   PetscFunctionReturn(0);
1571d4002b98SHong Zhang }
1572d4002b98SHong Zhang 
1573d4002b98SHong Zhang /*@C
1574d4002b98SHong Zhang      MatMPISELLGetLocalMatCondensed - Creates a SeqSELL matrix from an MATMPISELL matrix by taking all its local rows and NON-ZERO columns
1575d4002b98SHong Zhang 
1576d4002b98SHong Zhang     Not Collective
1577d4002b98SHong Zhang 
1578d4002b98SHong Zhang    Input Parameters:
1579d4002b98SHong Zhang +    A - the matrix
1580d4002b98SHong Zhang .    scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
1581d4002b98SHong Zhang -    row, col - index sets of rows and columns to extract (or NULL)
1582d4002b98SHong Zhang 
1583d4002b98SHong Zhang    Output Parameter:
1584d4002b98SHong Zhang .    A_loc - the local sequential matrix generated
1585d4002b98SHong Zhang 
1586d4002b98SHong Zhang     Level: developer
1587d4002b98SHong Zhang 
1588db781477SPatrick Sanan .seealso: `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()`
1589d4002b98SHong Zhang 
1590d4002b98SHong Zhang @*/
1591d4002b98SHong Zhang PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc)
1592d4002b98SHong Zhang {
1593d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
1594d4002b98SHong Zhang   PetscInt       i,start,end,ncols,nzA,nzB,*cmap,imark,*idx;
1595d4002b98SHong Zhang   IS             isrowa,iscola;
1596d4002b98SHong Zhang   Mat            *aloc;
1597d4002b98SHong Zhang   PetscBool      match;
1598d4002b98SHong Zhang 
1599d4002b98SHong Zhang   PetscFunctionBegin;
16009566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&match));
160128b400f6SJacob Faibussowitsch   PetscCheck(match,PetscObjectComm((PetscObject)A), PETSC_ERR_SUP,"Requires MATMPISELL matrix as input");
16029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed,A,0,0,0));
1603d4002b98SHong Zhang   if (!row) {
1604d4002b98SHong Zhang     start = A->rmap->rstart; end = A->rmap->rend;
16059566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa));
1606d4002b98SHong Zhang   } else {
1607d4002b98SHong Zhang     isrowa = *row;
1608d4002b98SHong Zhang   }
1609d4002b98SHong Zhang   if (!col) {
1610d4002b98SHong Zhang     start = A->cmap->rstart;
1611d4002b98SHong Zhang     cmap  = a->garray;
1612d4002b98SHong Zhang     nzA   = a->A->cmap->n;
1613d4002b98SHong Zhang     nzB   = a->B->cmap->n;
16149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA+nzB, &idx));
1615d4002b98SHong Zhang     ncols = 0;
1616d4002b98SHong Zhang     for (i=0; i<nzB; i++) {
1617d4002b98SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
1618d4002b98SHong Zhang       else break;
1619d4002b98SHong Zhang     }
1620d4002b98SHong Zhang     imark = i;
1621d4002b98SHong Zhang     for (i=0; i<nzA; i++) idx[ncols++] = start + i;
1622d4002b98SHong Zhang     for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i];
16239566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&iscola));
1624d4002b98SHong Zhang   } else {
1625d4002b98SHong Zhang     iscola = *col;
1626d4002b98SHong Zhang   }
1627d4002b98SHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
16289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1,&aloc));
1629d4002b98SHong Zhang     aloc[0] = *A_loc;
1630d4002b98SHong Zhang   }
16319566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A,1,&isrowa,&iscola,scall,&aloc));
1632d4002b98SHong Zhang   *A_loc = aloc[0];
16339566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
1634d4002b98SHong Zhang   if (!row) {
16359566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowa));
1636d4002b98SHong Zhang   }
1637d4002b98SHong Zhang   if (!col) {
16389566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscola));
1639d4002b98SHong Zhang   }
16409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed,A,0,0,0));
1641d4002b98SHong Zhang   PetscFunctionReturn(0);
1642d4002b98SHong Zhang }
1643d4002b98SHong Zhang 
1644d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
1645d4002b98SHong Zhang 
1646d4002b98SHong Zhang PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
1647d4002b98SHong Zhang {
1648d4002b98SHong Zhang   Mat_MPISELL    *a=(Mat_MPISELL*)A->data;
1649d4002b98SHong Zhang   Mat            B;
1650d4002b98SHong Zhang   Mat_MPIAIJ     *b;
1651d4002b98SHong Zhang 
1652d4002b98SHong Zhang   PetscFunctionBegin;
165328b400f6SJacob Faibussowitsch   PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
1654d4002b98SHong Zhang 
165594a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
165694a8b381SRichard Tran Mills     B = *newmat;
165794a8b381SRichard Tran Mills   } else {
16589566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
16599566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPIAIJ));
16609566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
16619566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs));
16629566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B,0,NULL));
16639566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL));
166494a8b381SRichard Tran Mills   }
1665d4002b98SHong Zhang   b    = (Mat_MPIAIJ*) B->data;
166694a8b381SRichard Tran Mills 
166794a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
16689566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
16699566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
167094a8b381SRichard Tran Mills   } else {
16719566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
16729566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
16739566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPISELL(A));
16749566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
16759566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
16769566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
16779566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
16789566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
16799566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
168094a8b381SRichard Tran Mills   }
1681d4002b98SHong Zhang 
1682d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
16839566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
1684d4002b98SHong Zhang   } else {
1685d4002b98SHong Zhang     *newmat = B;
1686d4002b98SHong Zhang   }
1687d4002b98SHong Zhang   PetscFunctionReturn(0);
1688d4002b98SHong Zhang }
1689d4002b98SHong Zhang 
1690d4002b98SHong Zhang PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
1691d4002b98SHong Zhang {
1692d4002b98SHong Zhang   Mat_MPIAIJ     *a=(Mat_MPIAIJ*)A->data;
1693d4002b98SHong Zhang   Mat            B;
1694d4002b98SHong Zhang   Mat_MPISELL    *b;
1695d4002b98SHong Zhang 
1696d4002b98SHong Zhang   PetscFunctionBegin;
169728b400f6SJacob Faibussowitsch   PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
1698d4002b98SHong Zhang 
169994a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
170094a8b381SRichard Tran Mills     B = *newmat;
170194a8b381SRichard Tran Mills   } else {
17029566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
17039566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPISELL));
17049566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
17059566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs));
17069566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B,0,NULL));
17079566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL));
170894a8b381SRichard Tran Mills   }
1709d4002b98SHong Zhang   b    = (Mat_MPISELL*) B->data;
171094a8b381SRichard Tran Mills 
171194a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
17129566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A));
17139566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B));
171494a8b381SRichard Tran Mills   } else {
17159566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
17169566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
17179566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPIAIJ(A));
17189566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A));
17199566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B));
17209566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
17219566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
17229566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
17239566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
172494a8b381SRichard Tran Mills   }
1725d4002b98SHong Zhang 
1726d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
17279566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
1728d4002b98SHong Zhang   } else {
1729d4002b98SHong Zhang     *newmat = B;
1730d4002b98SHong Zhang   }
1731d4002b98SHong Zhang   PetscFunctionReturn(0);
1732d4002b98SHong Zhang }
1733d4002b98SHong Zhang 
1734d4002b98SHong Zhang PetscErrorCode MatSOR_MPISELL(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1735d4002b98SHong Zhang {
1736d4002b98SHong Zhang   Mat_MPISELL    *mat=(Mat_MPISELL*)matin->data;
1737f4259b30SLisandro Dalcin   Vec            bb1=NULL;
1738d4002b98SHong Zhang 
1739d4002b98SHong Zhang   PetscFunctionBegin;
1740d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) {
17419566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
1742d4002b98SHong Zhang     PetscFunctionReturn(0);
1743d4002b98SHong Zhang   }
1744d4002b98SHong Zhang 
1745d4002b98SHong Zhang   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) {
17469566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb,&bb1));
1747d4002b98SHong Zhang   }
1748d4002b98SHong Zhang 
1749d4002b98SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1750d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
17519566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
1752d4002b98SHong Zhang       its--;
1753d4002b98SHong Zhang     }
1754d4002b98SHong Zhang 
1755d4002b98SHong Zhang     while (its--) {
17569566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
17579566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
1758d4002b98SHong Zhang 
1759d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
17609566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
17619566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
1762d4002b98SHong Zhang 
1763d4002b98SHong Zhang       /* local sweep */
17649566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx));
1765d4002b98SHong Zhang     }
1766d4002b98SHong Zhang   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1767d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
17689566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
1769d4002b98SHong Zhang       its--;
1770d4002b98SHong Zhang     }
1771d4002b98SHong Zhang     while (its--) {
17729566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
17739566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
1774d4002b98SHong Zhang 
1775d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
17769566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
17779566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
1778d4002b98SHong Zhang 
1779d4002b98SHong Zhang       /* local sweep */
17809566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx));
1781d4002b98SHong Zhang     }
1782d4002b98SHong Zhang   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1783d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
17849566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
1785d4002b98SHong Zhang       its--;
1786d4002b98SHong Zhang     }
1787d4002b98SHong Zhang     while (its--) {
17889566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
17899566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
1790d4002b98SHong Zhang 
1791d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
17929566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
17939566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
1794d4002b98SHong Zhang 
1795d4002b98SHong Zhang       /* local sweep */
17969566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx));
1797d4002b98SHong Zhang     }
1798d4002b98SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel SOR not supported");
1799d4002b98SHong Zhang 
18009566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1801d4002b98SHong Zhang 
1802d4002b98SHong Zhang   matin->factorerrortype = mat->A->factorerrortype;
1803d4002b98SHong Zhang   PetscFunctionReturn(0);
1804d4002b98SHong Zhang }
1805d4002b98SHong Zhang 
1806d4002b98SHong Zhang /*MC
1807d4002b98SHong Zhang    MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices.
1808d4002b98SHong Zhang 
1809d4002b98SHong Zhang    Options Database Keys:
1810d4002b98SHong Zhang . -mat_type MPISELL - sets the matrix type to "MPISELL" during a call to MatSetFromOptions()
1811d4002b98SHong Zhang 
1812d4002b98SHong Zhang   Level: beginner
1813d4002b98SHong Zhang 
1814db781477SPatrick Sanan .seealso: `MatCreateSELL()`
1815d4002b98SHong Zhang M*/
1816d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B)
1817d4002b98SHong Zhang {
1818d4002b98SHong Zhang   Mat_MPISELL    *b;
1819d4002b98SHong Zhang   PetscMPIInt    size;
1820d4002b98SHong Zhang 
1821d4002b98SHong Zhang   PetscFunctionBegin;
18229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
18239566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
1824d4002b98SHong Zhang   B->data       = (void*)b;
18259566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
1826d4002b98SHong Zhang   B->assembled  = PETSC_FALSE;
1827d4002b98SHong Zhang   B->insertmode = NOT_SET_VALUES;
1828d4002b98SHong Zhang   b->size       = size;
18299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank));
1830d4002b98SHong Zhang   /* build cache for off array entries formed */
18319566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash));
1832d4002b98SHong Zhang 
1833d4002b98SHong Zhang   b->donotstash  = PETSC_FALSE;
1834f4259b30SLisandro Dalcin   b->colmap      = NULL;
1835f4259b30SLisandro Dalcin   b->garray      = NULL;
1836d4002b98SHong Zhang   b->roworiented = PETSC_TRUE;
1837d4002b98SHong Zhang 
1838d4002b98SHong Zhang   /* stuff used for matrix vector multiply */
1839d4002b98SHong Zhang   b->lvec  = NULL;
1840d4002b98SHong Zhang   b->Mvctx = NULL;
1841d4002b98SHong Zhang 
1842d4002b98SHong Zhang   /* stuff for MatGetRow() */
1843f4259b30SLisandro Dalcin   b->rowindices   = NULL;
1844f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
1845d4002b98SHong Zhang   b->getrowactive = PETSC_FALSE;
1846d4002b98SHong Zhang 
18479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISELL));
18489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISELL));
18499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_MPISELL));
18509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISELLSetPreallocation_C",MatMPISELLSetPreallocation_MPISELL));
18519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisell_mpiaij_C",MatConvert_MPISELL_MPIAIJ));
18529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPISELL));
18539566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISELL));
1854d4002b98SHong Zhang   PetscFunctionReturn(0);
1855d4002b98SHong Zhang }
1856