1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 11d4002b98SHong Zhang This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 12d4002b98SHong Zhang and MATMPISELL otherwise. As a result, for single process communicators, 13d4002b98SHong Zhang MatSeqSELLSetPreallocation is supported, and similarly MatMPISELLSetPreallocation is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 18d4002b98SHong Zhang . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 22db781477SPatrick Sanan .seealso: `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL` 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25d4002b98SHong Zhang PetscErrorCode MatDiagonalSet_MPISELL(Mat Y,Vec D,InsertMode is) 26d4002b98SHong Zhang { 27d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A,D,is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y,D,is)); 34d4002b98SHong Zhang } 35d4002b98SHong Zhang PetscFunctionReturn(0); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43d4002b98SHong Zhang has an order N integer array but is fast to acess. 44d4002b98SHong Zhang */ 45d4002b98SHong Zhang PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d4002b98SHong Zhang { 47d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 48d4002b98SHong Zhang PetscInt n=sell->B->cmap->n,i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray,PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 539566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(n,mat->cmap->N+1,&sell->colmap)); 54d4002b98SHong Zhang for (i=0; i<n; i++) { 559566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(sell->colmap,sell->garray[i]+1,i+1,INSERT_VALUES)); 56d4002b98SHong Zhang } 57d4002b98SHong Zhang #else 589566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N+1,&sell->colmap)); 599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N+1)*sizeof(PetscInt))); 60d4002b98SHong Zhang for (i=0; i<n; i++) sell->colmap[sell->garray[i]] = i+1; 61d4002b98SHong Zhang #endif 62d4002b98SHong Zhang PetscFunctionReturn(0); 63d4002b98SHong Zhang } 64d4002b98SHong Zhang 65d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row,col,value,addv,orow,ocol) \ 66d4002b98SHong Zhang { \ 67d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 68d4002b98SHong Zhang else high1 = nrow1; \ 69d4002b98SHong Zhang lastcol1 = col; \ 70d4002b98SHong Zhang while (high1-low1 > 5) { \ 71d4002b98SHong Zhang t = (low1+high1)/2; \ 72d4002b98SHong Zhang if (*(cp1+8*t) > col) high1 = t; \ 73d4002b98SHong Zhang else low1 = t; \ 74d4002b98SHong Zhang } \ 75d4002b98SHong Zhang for (_i=low1; _i<high1; _i++) { \ 76d4002b98SHong Zhang if (*(cp1+8*_i) > col) break; \ 77d4002b98SHong Zhang if (*(cp1+8*_i) == col) { \ 78d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp1+8*_i) += value; \ 79d4002b98SHong Zhang else *(vp1+8*_i) = value; \ 80d4002b98SHong Zhang goto a_noinsert; \ 81d4002b98SHong Zhang } \ 82d4002b98SHong Zhang } \ 83d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low1 = 0; high1 = nrow1;goto a_noinsert;} \ 84d4002b98SHong Zhang if (nonew == 1) {low1 = 0; high1 = nrow1; goto a_noinsert;} \ 8508401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 86d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,am,1,nrow1,a->sliidx,row/8,row,col,a->colidx,a->val,cp1,vp1,nonew,MatScalar); \ 87d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 88d4002b98SHong Zhang for (ii=nrow1-1; ii>=_i; ii--) { \ 89d4002b98SHong Zhang *(cp1+8*(ii+1)) = *(cp1+8*ii); \ 90d4002b98SHong Zhang *(vp1+8*(ii+1)) = *(vp1+8*ii); \ 91d4002b98SHong Zhang } \ 92d4002b98SHong Zhang *(cp1+8*_i) = col; \ 93d4002b98SHong Zhang *(vp1+8*_i) = value; \ 94d4002b98SHong Zhang a->nz++; nrow1++; A->nonzerostate++; \ 95d4002b98SHong Zhang a_noinsert: ; \ 96d4002b98SHong Zhang a->rlen[row] = nrow1; \ 97d4002b98SHong Zhang } 98d4002b98SHong Zhang 99d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row,col,value,addv,orow,ocol) \ 100d4002b98SHong Zhang { \ 101d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 102d4002b98SHong Zhang else high2 = nrow2; \ 103d4002b98SHong Zhang lastcol2 = col; \ 104d4002b98SHong Zhang while (high2-low2 > 5) { \ 105d4002b98SHong Zhang t = (low2+high2)/2; \ 106d4002b98SHong Zhang if (*(cp2+8*t) > col) high2 = t; \ 107d4002b98SHong Zhang else low2 = t; \ 108d4002b98SHong Zhang } \ 109d4002b98SHong Zhang for (_i=low2; _i<high2; _i++) { \ 110d4002b98SHong Zhang if (*(cp2+8*_i) > col) break; \ 111d4002b98SHong Zhang if (*(cp2+8*_i) == col) { \ 112d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp2+8*_i) += value; \ 113d4002b98SHong Zhang else *(vp2+8*_i) = value; \ 114d4002b98SHong Zhang goto b_noinsert; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang } \ 117d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 118d4002b98SHong Zhang if (nonew == 1) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 11908401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 120d4002b98SHong Zhang MatSeqXSELLReallocateSELL(B,bm,1,nrow2,b->sliidx,row/8,row,col,b->colidx,b->val,cp2,vp2,nonew,MatScalar); \ 121d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 122d4002b98SHong Zhang for (ii=nrow2-1; ii>=_i; ii--) { \ 123d4002b98SHong Zhang *(cp2+8*(ii+1)) = *(cp2+8*ii); \ 124d4002b98SHong Zhang *(vp2+8*(ii+1)) = *(vp2+8*ii); \ 125d4002b98SHong Zhang } \ 126d4002b98SHong Zhang *(cp2+8*_i) = col; \ 127d4002b98SHong Zhang *(vp2+8*_i) = value; \ 128d4002b98SHong Zhang b->nz++; nrow2++; B->nonzerostate++; \ 129d4002b98SHong Zhang b_noinsert: ; \ 130d4002b98SHong Zhang b->rlen[row] = nrow2; \ 131d4002b98SHong Zhang } 132d4002b98SHong Zhang 133d4002b98SHong Zhang PetscErrorCode MatSetValues_MPISELL(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134d4002b98SHong Zhang { 135d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 136d4002b98SHong Zhang PetscScalar value; 137d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend,shift1,shift2; 138d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 139d4002b98SHong Zhang PetscBool roworiented=sell->roworiented; 140d4002b98SHong Zhang 141d4002b98SHong Zhang /* Some Variables required in the macro */ 142d4002b98SHong Zhang Mat A=sell->A; 143d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 144d4002b98SHong Zhang PetscBool ignorezeroentries=a->ignorezeroentries,found; 145d4002b98SHong Zhang Mat B=sell->B; 146d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 147d4002b98SHong Zhang PetscInt *cp1,*cp2,ii,_i,nrow1,nrow2,low1,high1,low2,high2,t,lastcol1,lastcol2; 148d4002b98SHong Zhang MatScalar *vp1,*vp2; 149d4002b98SHong Zhang 150d4002b98SHong Zhang PetscFunctionBegin; 151d4002b98SHong Zhang for (i=0; i<m; i++) { 152d4002b98SHong Zhang if (im[i] < 0) continue; 1536bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 154d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 155d4002b98SHong Zhang row = im[i] - rstart; 156d4002b98SHong Zhang lastcol1 = -1; 157d4002b98SHong Zhang shift1 = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 158d4002b98SHong Zhang cp1 = a->colidx+shift1; 159d4002b98SHong Zhang vp1 = a->val+shift1; 160d4002b98SHong Zhang nrow1 = a->rlen[row]; 161d4002b98SHong Zhang low1 = 0; 162d4002b98SHong Zhang high1 = nrow1; 163d4002b98SHong Zhang lastcol2 = -1; 164d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 165d4002b98SHong Zhang cp2 = b->colidx+shift2; 166d4002b98SHong Zhang vp2 = b->val+shift2; 167d4002b98SHong Zhang nrow2 = b->rlen[row]; 168d4002b98SHong Zhang low2 = 0; 169d4002b98SHong Zhang high2 = nrow2; 170d4002b98SHong Zhang 171d4002b98SHong Zhang for (j=0; j<n; j++) { 172d4002b98SHong Zhang if (roworiented) value = v[i*n+j]; 173d4002b98SHong Zhang else value = v[i+j*m]; 174d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 175d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 176d4002b98SHong Zhang col = in[j] - cstart; 177d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A,row,col,value,addv,im[i],in[j],cp1,vp1,lastcol1,low1,high1); /* set one value */ 178f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 179f7d195e4SLawrence Mitchell continue; 180f7d195e4SLawrence Mitchell } else { 181f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 182d4002b98SHong Zhang if (mat->was_assembled) { 183d4002b98SHong Zhang if (!sell->colmap) { 1849566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 185d4002b98SHong Zhang } 186d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 1879566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,in[j]+1,&col)); 188d4002b98SHong Zhang col--; 189d4002b98SHong Zhang #else 190d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 191d4002b98SHong Zhang #endif 192d4002b98SHong Zhang if (col < 0 && !((Mat_SeqSELL*)(sell->B->data))->nonew) { 1939566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 194d4002b98SHong Zhang col = in[j]; 195d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 196d4002b98SHong Zhang B = sell->B; 197d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 198d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 199d4002b98SHong Zhang cp2 = b->colidx+shift2; 200d4002b98SHong Zhang vp2 = b->val+shift2; 201d4002b98SHong Zhang nrow2 = b->rlen[row]; 202d4002b98SHong Zhang low2 = 0; 203d4002b98SHong Zhang high2 = nrow2; 204f7d195e4SLawrence Mitchell } else { 205f7d195e4SLawrence Mitchell PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 206f7d195e4SLawrence Mitchell } 207d4002b98SHong Zhang } else col = in[j]; 208d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B,row,col,value,addv,im[i],in[j],cp2,vp2,lastcol2,low2,high2); /* set one value */ 209d4002b98SHong Zhang } 210d4002b98SHong Zhang } 211d4002b98SHong Zhang } else { 21228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 213d4002b98SHong Zhang if (!sell->donotstash) { 214d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 215d4002b98SHong Zhang if (roworiented) { 2169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 217d4002b98SHong Zhang } else { 2189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 219d4002b98SHong Zhang } 220d4002b98SHong Zhang } 221d4002b98SHong Zhang } 222d4002b98SHong Zhang } 223d4002b98SHong Zhang PetscFunctionReturn(0); 224d4002b98SHong Zhang } 225d4002b98SHong Zhang 226d4002b98SHong Zhang PetscErrorCode MatGetValues_MPISELL(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 227d4002b98SHong Zhang { 228d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 229d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend; 230d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 231d4002b98SHong Zhang 232d4002b98SHong Zhang PetscFunctionBegin; 233d4002b98SHong Zhang for (i=0; i<m; i++) { 23454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 23554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 236d4002b98SHong Zhang if (idxm[i] >= rstart && idxm[i] < rend) { 237d4002b98SHong Zhang row = idxm[i] - rstart; 238d4002b98SHong Zhang for (j=0; j<n; j++) { 23954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 24054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 241d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 242d4002b98SHong Zhang col = idxn[j] - cstart; 2439566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A,1,&row,1,&col,v+i*n+j)); 244d4002b98SHong Zhang } else { 245d4002b98SHong Zhang if (!sell->colmap) { 2469566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 247d4002b98SHong Zhang } 248d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 2499566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,idxn[j]+1,&col)); 250d4002b98SHong Zhang col--; 251d4002b98SHong Zhang #else 252d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 253d4002b98SHong Zhang #endif 254d4002b98SHong Zhang if ((col < 0) || (sell->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 255d4002b98SHong Zhang else { 2569566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->B,1,&row,1,&col,v+i*n+j)); 257d4002b98SHong Zhang } 258d4002b98SHong Zhang } 259d4002b98SHong Zhang } 260d4002b98SHong Zhang } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 261d4002b98SHong Zhang } 262d4002b98SHong Zhang PetscFunctionReturn(0); 263d4002b98SHong Zhang } 264d4002b98SHong Zhang 265d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat,Vec,Vec); 266d4002b98SHong Zhang 267d4002b98SHong Zhang PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat,MatAssemblyType mode) 268d4002b98SHong Zhang { 269d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 270d4002b98SHong Zhang PetscInt nstash,reallocs; 271d4002b98SHong Zhang 272d4002b98SHong Zhang PetscFunctionBegin; 273d4002b98SHong Zhang if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 274d4002b98SHong Zhang 2759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 2769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 2779566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 278d4002b98SHong Zhang PetscFunctionReturn(0); 279d4002b98SHong Zhang } 280d4002b98SHong Zhang 281d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat,MatAssemblyType mode) 282d4002b98SHong Zhang { 283d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 284d4002b98SHong Zhang PetscMPIInt n; 285d4002b98SHong Zhang PetscInt i,flg; 286d4002b98SHong Zhang PetscInt *row,*col; 287d4002b98SHong Zhang PetscScalar *val; 288d4002b98SHong Zhang PetscBool other_disassembled; 289d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 290d4002b98SHong Zhang PetscFunctionBegin; 291d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 292d4002b98SHong Zhang while (1) { 2939566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 294d4002b98SHong Zhang if (!flg) break; 295d4002b98SHong Zhang 296d4002b98SHong Zhang for (i=0; i<n; i++) { /* assemble one by one */ 2979566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat,1,row+i,1,col+i,val+i,mat->insertmode)); 298d4002b98SHong Zhang } 299d4002b98SHong Zhang } 3009566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 301d4002b98SHong Zhang } 3029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A,mode)); 3039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A,mode)); 304d4002b98SHong Zhang 305d4002b98SHong Zhang /* 306d4002b98SHong Zhang determine if any processor has disassembled, if so we must 3076aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. 308d4002b98SHong Zhang */ 309d4002b98SHong Zhang /* 310d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 311d4002b98SHong Zhang no processor disassembled thus we can skip this stuff 312d4002b98SHong Zhang */ 313d4002b98SHong Zhang if (!((Mat_SeqSELL*)sell->B->data)->nonew) { 3141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 31508401ef6SPierre Jolivet PetscCheck(!mat->was_assembled || other_disassembled,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatDisAssemble not implemented yet"); 316d4002b98SHong Zhang } 317d4002b98SHong Zhang if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 3189566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPISELL(mat)); 319d4002b98SHong Zhang } 320d4002b98SHong Zhang /* 3219566063dSJacob Faibussowitsch PetscCall(MatSetOption(sell->B,MAT_USE_INODES,PETSC_FALSE)); 322d4002b98SHong Zhang */ 3239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B,mode)); 3249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B,mode)); 3259566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 326f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 328d4002b98SHong Zhang 329d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 330d4002b98SHong Zhang if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL*)(sell->A->data))->nonew) { 331d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 3321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 333d4002b98SHong Zhang } 334d4002b98SHong Zhang PetscFunctionReturn(0); 335d4002b98SHong Zhang } 336d4002b98SHong Zhang 337d4002b98SHong Zhang PetscErrorCode MatZeroEntries_MPISELL(Mat A) 338d4002b98SHong Zhang { 339d4002b98SHong Zhang Mat_MPISELL *l=(Mat_MPISELL*)A->data; 340d4002b98SHong Zhang 341d4002b98SHong Zhang PetscFunctionBegin; 3429566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3439566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 344d4002b98SHong Zhang PetscFunctionReturn(0); 345d4002b98SHong Zhang } 346d4002b98SHong Zhang 347d4002b98SHong Zhang PetscErrorCode MatMult_MPISELL(Mat A,Vec xx,Vec yy) 348d4002b98SHong Zhang { 349d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 350d4002b98SHong Zhang PetscInt nt; 351d4002b98SHong Zhang 352d4002b98SHong Zhang PetscFunctionBegin; 3539566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 35408401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",A->cmap->n,nt); 3559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3569566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 3579566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3589566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 359d4002b98SHong Zhang PetscFunctionReturn(0); 360d4002b98SHong Zhang } 361d4002b98SHong Zhang 362d4002b98SHong Zhang PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A,Vec bb,Vec xx) 363d4002b98SHong Zhang { 364d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 365d4002b98SHong Zhang 366d4002b98SHong Zhang PetscFunctionBegin; 3679566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A,bb,xx)); 368d4002b98SHong Zhang PetscFunctionReturn(0); 369d4002b98SHong Zhang } 370d4002b98SHong Zhang 371d4002b98SHong Zhang PetscErrorCode MatMultAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 372d4002b98SHong Zhang { 373d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 374d4002b98SHong Zhang 375d4002b98SHong Zhang PetscFunctionBegin; 3769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3779566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 3789566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3799566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 380d4002b98SHong Zhang PetscFunctionReturn(0); 381d4002b98SHong Zhang } 382d4002b98SHong Zhang 383d4002b98SHong Zhang PetscErrorCode MatMultTranspose_MPISELL(Mat A,Vec xx,Vec yy) 384d4002b98SHong Zhang { 385d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 386d4002b98SHong Zhang 387d4002b98SHong Zhang PetscFunctionBegin; 388d4002b98SHong Zhang /* do nondiagonal part */ 3899566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 390d4002b98SHong Zhang /* do local part */ 3919566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 392a29b4eb7SJunchao Zhang /* add partial results together */ 3939566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 3949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 395d4002b98SHong Zhang PetscFunctionReturn(0); 396d4002b98SHong Zhang } 397d4002b98SHong Zhang 398d4002b98SHong Zhang PetscErrorCode MatIsTranspose_MPISELL(Mat Amat,Mat Bmat,PetscReal tol,PetscBool *f) 399d4002b98SHong Zhang { 400d4002b98SHong Zhang MPI_Comm comm; 401d4002b98SHong Zhang Mat_MPISELL *Asell=(Mat_MPISELL*)Amat->data,*Bsell; 402d4002b98SHong Zhang Mat Adia=Asell->A,Bdia,Aoff,Boff,*Aoffs,*Boffs; 403d4002b98SHong Zhang IS Me,Notme; 404d4002b98SHong Zhang PetscInt M,N,first,last,*notme,i; 405d4002b98SHong Zhang PetscMPIInt size; 406d4002b98SHong Zhang 407d4002b98SHong Zhang PetscFunctionBegin; 408d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 409d4002b98SHong Zhang Bsell = (Mat_MPISELL*)Bmat->data; Bdia = Bsell->A; 4109566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia,Bdia,tol,f)); 411d4002b98SHong Zhang if (!*f) PetscFunctionReturn(0); 4129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat,&comm)); 4139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 414d4002b98SHong Zhang if (size == 1) PetscFunctionReturn(0); 415d4002b98SHong Zhang 416d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4179566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat,&M,&N)); 4189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat,&first,&last)); 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N-last+first,¬me)); 420d4002b98SHong Zhang for (i=0; i<first; i++) notme[i] = i; 421d4002b98SHong Zhang for (i=last; i<M; i++) notme[i-last+first] = i; 4229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,PETSC_COPY_VALUES,&Notme)); 4239566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me)); 4249566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs)); 425d4002b98SHong Zhang Aoff = Aoffs[0]; 4269566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs)); 427d4002b98SHong Zhang Boff = Boffs[0]; 4289566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff,Boff,tol,f)); 4299566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Aoffs)); 4309566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Boffs)); 4319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4339566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 434d4002b98SHong Zhang PetscFunctionReturn(0); 435d4002b98SHong Zhang } 436d4002b98SHong Zhang 437d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 438d4002b98SHong Zhang { 439d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 440d4002b98SHong Zhang 441d4002b98SHong Zhang PetscFunctionBegin; 442d4002b98SHong Zhang /* do nondiagonal part */ 4439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 444d4002b98SHong Zhang /* do local part */ 4459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 446e4a140f6SJunchao Zhang /* add partial results together */ 4479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 4489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 449d4002b98SHong Zhang PetscFunctionReturn(0); 450d4002b98SHong Zhang } 451d4002b98SHong Zhang 452d4002b98SHong Zhang /* 453d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 454d4002b98SHong Zhang diagonal block 455d4002b98SHong Zhang */ 456d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_MPISELL(Mat A,Vec v) 457d4002b98SHong Zhang { 458d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 459d4002b98SHong Zhang 460d4002b98SHong Zhang PetscFunctionBegin; 46108401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 462aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"row partition must equal col partition"); 4639566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A,v)); 464d4002b98SHong Zhang PetscFunctionReturn(0); 465d4002b98SHong Zhang } 466d4002b98SHong Zhang 467d4002b98SHong Zhang PetscErrorCode MatScale_MPISELL(Mat A,PetscScalar aa) 468d4002b98SHong Zhang { 469d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 470d4002b98SHong Zhang 471d4002b98SHong Zhang PetscFunctionBegin; 4729566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 4739566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 474d4002b98SHong Zhang PetscFunctionReturn(0); 475d4002b98SHong Zhang } 476d4002b98SHong Zhang 477d4002b98SHong Zhang PetscErrorCode MatDestroy_MPISELL(Mat mat) 478d4002b98SHong Zhang { 479d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 480d4002b98SHong Zhang 481d4002b98SHong Zhang PetscFunctionBegin; 482d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 483c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 484d4002b98SHong Zhang #endif 4859566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 4869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 4879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 4889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 489d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 4909566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&sell->colmap)); 491d4002b98SHong Zhang #else 4929566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 493d4002b98SHong Zhang #endif 4949566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 4959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 4969566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 4979566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 4989566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 4999566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 500d4002b98SHong Zhang 5019566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C",NULL)); 5059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISELLSetPreallocation_C",NULL)); 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisell_mpiaij_C",NULL)); 5079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 508d4002b98SHong Zhang PetscFunctionReturn(0); 509d4002b98SHong Zhang } 510d4002b98SHong Zhang 511d4002b98SHong Zhang #include <petscdraw.h> 512d4002b98SHong Zhang PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 513d4002b98SHong Zhang { 514d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 515d4002b98SHong Zhang PetscMPIInt rank=sell->rank,size=sell->size; 516d4002b98SHong Zhang PetscBool isdraw,iascii,isbinary; 517d4002b98SHong Zhang PetscViewer sviewer; 518d4002b98SHong Zhang PetscViewerFormat format; 519d4002b98SHong Zhang 520d4002b98SHong Zhang PetscFunctionBegin; 5219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 5239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 524d4002b98SHong Zhang if (iascii) { 5259566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 526d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 527d4002b98SHong Zhang MatInfo info; 5286335e310SSatish Balay PetscInt *inodes; 529d4002b98SHong Zhang 5309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 5319566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 5329566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,NULL,&inodes,NULL)); 5339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 534d4002b98SHong Zhang if (!inodes) { 535d0609cedSBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", 536d0609cedSBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 537d4002b98SHong Zhang } else { 538d0609cedSBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", 539d0609cedSBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 540d4002b98SHong Zhang } 5419566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A,MAT_LOCAL,&info)); 5429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5439566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B,MAT_LOCAL,&info)); 5449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5459566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 5489566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx,viewer)); 549d4002b98SHong Zhang PetscFunctionReturn(0); 550d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 551d4002b98SHong Zhang PetscInt inodecount,inodelimit,*inodes; 5529566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,&inodecount,&inodes,&inodelimit)); 553d4002b98SHong Zhang if (inodes) { 5549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n",inodecount,inodelimit)); 555d4002b98SHong Zhang } else { 5569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n")); 557d4002b98SHong Zhang } 558d4002b98SHong Zhang PetscFunctionReturn(0); 559d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 560d4002b98SHong Zhang PetscFunctionReturn(0); 561d4002b98SHong Zhang } 562d4002b98SHong Zhang } else if (isbinary) { 563d4002b98SHong Zhang if (size == 1) { 5649566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A,((PetscObject)mat)->name)); 5659566063dSJacob Faibussowitsch PetscCall(MatView(sell->A,viewer)); 566d4002b98SHong Zhang } else { 5679566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 568d4002b98SHong Zhang } 569d4002b98SHong Zhang PetscFunctionReturn(0); 570d4002b98SHong Zhang } else if (isdraw) { 571d4002b98SHong Zhang PetscDraw draw; 572d4002b98SHong Zhang PetscBool isnull; 5739566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 5749566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 575d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 576d4002b98SHong Zhang } 577d4002b98SHong Zhang 578d4002b98SHong Zhang { 579d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 580d4002b98SHong Zhang Mat A; 581d4002b98SHong Zhang Mat_SeqSELL *Aloc; 582d4002b98SHong Zhang PetscInt M=mat->rmap->N,N=mat->cmap->N,*acolidx,row,col,i,j; 583d4002b98SHong Zhang MatScalar *aval; 584d4002b98SHong Zhang PetscBool isnonzero; 585d4002b98SHong Zhang 5869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 587dd400576SPatrick Sanan if (rank == 0) { 5889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 589d4002b98SHong Zhang } else { 5909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 591d4002b98SHong Zhang } 592d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 5939566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPISELL)); 5949566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,0,NULL,0,NULL)); 5959566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 5969566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 597d4002b98SHong Zhang 598d4002b98SHong Zhang /* copy over the A part */ 599d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->A->data; 600d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 601d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { /* loop over slices */ 602d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 603d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 604d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 605d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; /* i<<3 is the starting row of this slice */ 606d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6079566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 608d4002b98SHong Zhang } 609d4002b98SHong Zhang aval++; acolidx++; 610d4002b98SHong Zhang } 611d4002b98SHong Zhang } 612d4002b98SHong Zhang 613d4002b98SHong Zhang /* copy over the B part */ 614d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->B->data; 615d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 616d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { 617d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 618d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 619d4002b98SHong Zhang if (isnonzero) { 620d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; 621d4002b98SHong Zhang col = sell->garray[*acolidx]; 6229566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 623d4002b98SHong Zhang } 624d4002b98SHong Zhang aval++; acolidx++; 625d4002b98SHong Zhang } 626d4002b98SHong Zhang } 627d4002b98SHong Zhang 6289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 630d4002b98SHong Zhang /* 631d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 632d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 633d4002b98SHong Zhang */ 6349566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 635dd400576SPatrick Sanan if (rank == 0) { 6369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL*)(A->data))->A,((PetscObject)mat)->name)); 6379566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL(((Mat_MPISELL*)(A->data))->A,sviewer)); 638d4002b98SHong Zhang } 6399566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6409566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 642d4002b98SHong Zhang } 643d4002b98SHong Zhang PetscFunctionReturn(0); 644d4002b98SHong Zhang } 645d4002b98SHong Zhang 646d4002b98SHong Zhang PetscErrorCode MatView_MPISELL(Mat mat,PetscViewer viewer) 647d4002b98SHong Zhang { 648d4002b98SHong Zhang PetscBool iascii,isdraw,issocket,isbinary; 649d4002b98SHong Zhang 650d4002b98SHong Zhang PetscFunctionBegin; 6519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 655d4002b98SHong Zhang if (iascii || isdraw || isbinary || issocket) { 6569566063dSJacob Faibussowitsch PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat,viewer)); 657d4002b98SHong Zhang } 658d4002b98SHong Zhang PetscFunctionReturn(0); 659d4002b98SHong Zhang } 660d4002b98SHong Zhang 661d4002b98SHong Zhang PetscErrorCode MatGetGhosts_MPISELL(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 662d4002b98SHong Zhang { 663d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 664d4002b98SHong Zhang 665d4002b98SHong Zhang PetscFunctionBegin; 6669566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B,NULL,nghosts)); 667d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 668d4002b98SHong Zhang PetscFunctionReturn(0); 669d4002b98SHong Zhang } 670d4002b98SHong Zhang 671d4002b98SHong Zhang PetscErrorCode MatGetInfo_MPISELL(Mat matin,MatInfoType flag,MatInfo *info) 672d4002b98SHong Zhang { 673d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 674d4002b98SHong Zhang Mat A=mat->A,B=mat->B; 6753966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 676d4002b98SHong Zhang 677d4002b98SHong Zhang PetscFunctionBegin; 678d4002b98SHong Zhang info->block_size = 1.0; 6799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 680d4002b98SHong Zhang 681d4002b98SHong Zhang isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 682d4002b98SHong Zhang isend[3] = info->memory; isend[4] = info->mallocs; 683d4002b98SHong Zhang 6849566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 685d4002b98SHong Zhang 686d4002b98SHong Zhang isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 687d4002b98SHong Zhang isend[3] += info->memory; isend[4] += info->mallocs; 688d4002b98SHong Zhang if (flag == MAT_LOCAL) { 689d4002b98SHong Zhang info->nz_used = isend[0]; 690d4002b98SHong Zhang info->nz_allocated = isend[1]; 691d4002b98SHong Zhang info->nz_unneeded = isend[2]; 692d4002b98SHong Zhang info->memory = isend[3]; 693d4002b98SHong Zhang info->mallocs = isend[4]; 694d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 6951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 696d4002b98SHong Zhang 697d4002b98SHong Zhang info->nz_used = irecv[0]; 698d4002b98SHong Zhang info->nz_allocated = irecv[1]; 699d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 700d4002b98SHong Zhang info->memory = irecv[3]; 701d4002b98SHong Zhang info->mallocs = irecv[4]; 702d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 704d4002b98SHong Zhang 705d4002b98SHong Zhang info->nz_used = irecv[0]; 706d4002b98SHong Zhang info->nz_allocated = irecv[1]; 707d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 708d4002b98SHong Zhang info->memory = irecv[3]; 709d4002b98SHong Zhang info->mallocs = irecv[4]; 710d4002b98SHong Zhang } 711d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 712d4002b98SHong Zhang info->fill_ratio_needed = 0; 713d4002b98SHong Zhang info->factor_mallocs = 0; 714d4002b98SHong Zhang PetscFunctionReturn(0); 715d4002b98SHong Zhang } 716d4002b98SHong Zhang 717d4002b98SHong Zhang PetscErrorCode MatSetOption_MPISELL(Mat A,MatOption op,PetscBool flg) 718d4002b98SHong Zhang { 719d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 720d4002b98SHong Zhang 721d4002b98SHong Zhang PetscFunctionBegin; 722d4002b98SHong Zhang switch (op) { 723d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 724d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 725d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 726d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 727d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 728d4002b98SHong Zhang case MAT_USE_INODES: 729d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 730d4002b98SHong Zhang MatCheckPreallocated(A,1); 7319566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7329566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 733d4002b98SHong Zhang break; 734d4002b98SHong Zhang case MAT_ROW_ORIENTED: 735d4002b98SHong Zhang MatCheckPreallocated(A,1); 736d4002b98SHong Zhang a->roworiented = flg; 737d4002b98SHong Zhang 7389566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7399566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 740d4002b98SHong Zhang break; 7418c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 742071fcb05SBarry Smith case MAT_SORTED_FULL: 7439566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 744d4002b98SHong Zhang break; 745d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 746d4002b98SHong Zhang a->donotstash = flg; 747d4002b98SHong Zhang break; 748d4002b98SHong Zhang case MAT_SPD: 749d4002b98SHong Zhang A->spd_set = PETSC_TRUE; 750d4002b98SHong Zhang A->spd = flg; 751d4002b98SHong Zhang if (flg) { 752d4002b98SHong Zhang A->symmetric = PETSC_TRUE; 753d4002b98SHong Zhang A->structurally_symmetric = PETSC_TRUE; 754d4002b98SHong Zhang A->symmetric_set = PETSC_TRUE; 755d4002b98SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 756d4002b98SHong Zhang } 757d4002b98SHong Zhang break; 758d4002b98SHong Zhang case MAT_SYMMETRIC: 759d4002b98SHong Zhang MatCheckPreallocated(A,1); 7609566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 761d4002b98SHong Zhang break; 762d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 763d4002b98SHong Zhang MatCheckPreallocated(A,1); 7649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 765d4002b98SHong Zhang break; 766d4002b98SHong Zhang case MAT_HERMITIAN: 767d4002b98SHong Zhang MatCheckPreallocated(A,1); 7689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 769d4002b98SHong Zhang break; 770d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 771d4002b98SHong Zhang MatCheckPreallocated(A,1); 7729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 773d4002b98SHong Zhang break; 774d4002b98SHong Zhang default: 77598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 776d4002b98SHong Zhang } 777d4002b98SHong Zhang PetscFunctionReturn(0); 778d4002b98SHong Zhang } 779d4002b98SHong Zhang 780d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_MPISELL(Mat mat,Vec ll,Vec rr) 781d4002b98SHong Zhang { 782d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 783d4002b98SHong Zhang Mat a=sell->A,b=sell->B; 784d4002b98SHong Zhang PetscInt s1,s2,s3; 785d4002b98SHong Zhang 786d4002b98SHong Zhang PetscFunctionBegin; 7879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 788d4002b98SHong Zhang if (rr) { 7899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 79008401ef6SPierre Jolivet PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 791d4002b98SHong Zhang /* Overlap communication with computation. */ 7929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 793d4002b98SHong Zhang } 794d4002b98SHong Zhang if (ll) { 7959566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 79608401ef6SPierre Jolivet PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 7979566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 798d4002b98SHong Zhang } 799d4002b98SHong Zhang /* scale the diagonal block */ 8009566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 801d4002b98SHong Zhang 802d4002b98SHong Zhang if (rr) { 803d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 8059566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,sell->lvec)); 806d4002b98SHong Zhang } 807d4002b98SHong Zhang PetscFunctionReturn(0); 808d4002b98SHong Zhang } 809d4002b98SHong Zhang 810d4002b98SHong Zhang PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 811d4002b98SHong Zhang { 812d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 813d4002b98SHong Zhang 814d4002b98SHong Zhang PetscFunctionBegin; 8159566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 816d4002b98SHong Zhang PetscFunctionReturn(0); 817d4002b98SHong Zhang } 818d4002b98SHong Zhang 819d4002b98SHong Zhang PetscErrorCode MatEqual_MPISELL(Mat A,Mat B,PetscBool *flag) 820d4002b98SHong Zhang { 821d4002b98SHong Zhang Mat_MPISELL *matB=(Mat_MPISELL*)B->data,*matA=(Mat_MPISELL*)A->data; 822d4002b98SHong Zhang Mat a,b,c,d; 823d4002b98SHong Zhang PetscBool flg; 824d4002b98SHong Zhang 825d4002b98SHong Zhang PetscFunctionBegin; 826d4002b98SHong Zhang a = matA->A; b = matA->B; 827d4002b98SHong Zhang c = matB->A; d = matB->B; 828d4002b98SHong Zhang 8299566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 830d4002b98SHong Zhang if (flg) { 8319566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 832d4002b98SHong Zhang } 8331c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 834d4002b98SHong Zhang PetscFunctionReturn(0); 835d4002b98SHong Zhang } 836d4002b98SHong Zhang 837d4002b98SHong Zhang PetscErrorCode MatCopy_MPISELL(Mat A,Mat B,MatStructure str) 838d4002b98SHong Zhang { 839d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 840d4002b98SHong Zhang Mat_MPISELL *b=(Mat_MPISELL*)B->data; 841d4002b98SHong Zhang 842d4002b98SHong Zhang PetscFunctionBegin; 843d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 844d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 845d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 846d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 847d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 848d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 849d4002b98SHong Zhang then copying the submatrices */ 8509566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 851d4002b98SHong Zhang } else { 8529566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 8539566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 854d4002b98SHong Zhang } 855d4002b98SHong Zhang PetscFunctionReturn(0); 856d4002b98SHong Zhang } 857d4002b98SHong Zhang 858d4002b98SHong Zhang PetscErrorCode MatSetUp_MPISELL(Mat A) 859d4002b98SHong Zhang { 860d4002b98SHong Zhang PetscFunctionBegin; 8619566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 862d4002b98SHong Zhang PetscFunctionReturn(0); 863d4002b98SHong Zhang } 864d4002b98SHong Zhang 865d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat); 866d4002b98SHong Zhang 867d4002b98SHong Zhang PetscErrorCode MatConjugate_MPISELL(Mat mat) 868d4002b98SHong Zhang { 8695f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8705f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 871d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 872d4002b98SHong Zhang 8739566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8749566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8755f80ce2aSJacob Faibussowitsch } 876d4002b98SHong Zhang PetscFunctionReturn(0); 877d4002b98SHong Zhang } 878d4002b98SHong Zhang 879d4002b98SHong Zhang PetscErrorCode MatRealPart_MPISELL(Mat A) 880d4002b98SHong Zhang { 881d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 882d4002b98SHong Zhang 883d4002b98SHong Zhang PetscFunctionBegin; 8849566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 8859566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 886d4002b98SHong Zhang PetscFunctionReturn(0); 887d4002b98SHong Zhang } 888d4002b98SHong Zhang 889d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 890d4002b98SHong Zhang { 891d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 892d4002b98SHong Zhang 893d4002b98SHong Zhang PetscFunctionBegin; 8949566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 8959566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 896d4002b98SHong Zhang PetscFunctionReturn(0); 897d4002b98SHong Zhang } 898d4002b98SHong Zhang 899d4002b98SHong Zhang PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A,const PetscScalar **values) 900d4002b98SHong Zhang { 901d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 902d4002b98SHong Zhang 903d4002b98SHong Zhang PetscFunctionBegin; 9049566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 905d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 906d4002b98SHong Zhang PetscFunctionReturn(0); 907d4002b98SHong Zhang } 908d4002b98SHong Zhang 909d4002b98SHong Zhang static PetscErrorCode MatSetRandom_MPISELL(Mat x,PetscRandom rctx) 910d4002b98SHong Zhang { 911d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)x->data; 912d4002b98SHong Zhang 913d4002b98SHong Zhang PetscFunctionBegin; 9149566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A,rctx)); 9159566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B,rctx)); 9169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x,MAT_FINAL_ASSEMBLY)); 9179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x,MAT_FINAL_ASSEMBLY)); 918d4002b98SHong Zhang PetscFunctionReturn(0); 919d4002b98SHong Zhang } 920d4002b98SHong Zhang 921d4002b98SHong Zhang PetscErrorCode MatSetFromOptions_MPISELL(PetscOptionItems *PetscOptionsObject,Mat A) 922d4002b98SHong Zhang { 923d4002b98SHong Zhang PetscFunctionBegin; 924d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject,"MPISELL options"); 925d0609cedSBarry Smith PetscOptionsHeadEnd(); 926d4002b98SHong Zhang PetscFunctionReturn(0); 927d4002b98SHong Zhang } 928d4002b98SHong Zhang 929d4002b98SHong Zhang PetscErrorCode MatShift_MPISELL(Mat Y,PetscScalar a) 930d4002b98SHong Zhang { 931d4002b98SHong Zhang Mat_MPISELL *msell=(Mat_MPISELL*)Y->data; 932d4002b98SHong Zhang Mat_SeqSELL *sell=(Mat_SeqSELL*)msell->A->data; 933d4002b98SHong Zhang 934d4002b98SHong Zhang PetscFunctionBegin; 935d4002b98SHong Zhang if (!Y->preallocated) { 9369566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y,1,NULL,0,NULL)); 937d4002b98SHong Zhang } else if (!sell->nz) { 938d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9399566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A,1,NULL)); 940d4002b98SHong Zhang sell->nonew = nonew; 941d4002b98SHong Zhang } 9429566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 943d4002b98SHong Zhang PetscFunctionReturn(0); 944d4002b98SHong Zhang } 945d4002b98SHong Zhang 946d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_MPISELL(Mat A,PetscBool *missing,PetscInt *d) 947d4002b98SHong Zhang { 948d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 949d4002b98SHong Zhang 950d4002b98SHong Zhang PetscFunctionBegin; 95108401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 9529566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 953d4002b98SHong Zhang if (d) { 954d4002b98SHong Zhang PetscInt rstart; 9559566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 956d4002b98SHong Zhang *d += rstart; 957d4002b98SHong Zhang 958d4002b98SHong Zhang } 959d4002b98SHong Zhang PetscFunctionReturn(0); 960d4002b98SHong Zhang } 961d4002b98SHong Zhang 962d4002b98SHong Zhang PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A,Mat *a) 963d4002b98SHong Zhang { 964d4002b98SHong Zhang PetscFunctionBegin; 965d4002b98SHong Zhang *a = ((Mat_MPISELL*)A->data)->A; 966d4002b98SHong Zhang PetscFunctionReturn(0); 967d4002b98SHong Zhang } 968d4002b98SHong Zhang 969d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 970d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 971f4259b30SLisandro Dalcin NULL, 972f4259b30SLisandro Dalcin NULL, 973d4002b98SHong Zhang MatMult_MPISELL, 974d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 975d4002b98SHong Zhang MatMultTranspose_MPISELL, 976d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 977f4259b30SLisandro Dalcin NULL, 978f4259b30SLisandro Dalcin NULL, 979f4259b30SLisandro Dalcin NULL, 980f4259b30SLisandro Dalcin /*10*/ NULL, 981f4259b30SLisandro Dalcin NULL, 982f4259b30SLisandro Dalcin NULL, 983d4002b98SHong Zhang MatSOR_MPISELL, 984f4259b30SLisandro Dalcin NULL, 985d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 986d4002b98SHong Zhang MatEqual_MPISELL, 987d4002b98SHong Zhang MatGetDiagonal_MPISELL, 988d4002b98SHong Zhang MatDiagonalScale_MPISELL, 989f4259b30SLisandro Dalcin NULL, 990d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 991d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 992d4002b98SHong Zhang MatSetOption_MPISELL, 993d4002b98SHong Zhang MatZeroEntries_MPISELL, 994f4259b30SLisandro Dalcin /*24*/ NULL, 995f4259b30SLisandro Dalcin NULL, 996f4259b30SLisandro Dalcin NULL, 997f4259b30SLisandro Dalcin NULL, 998f4259b30SLisandro Dalcin NULL, 999d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 1000f4259b30SLisandro Dalcin NULL, 1001f4259b30SLisandro Dalcin NULL, 1002d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1003f4259b30SLisandro Dalcin NULL, 1004d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1005f4259b30SLisandro Dalcin NULL, 1006f4259b30SLisandro Dalcin NULL, 1007f4259b30SLisandro Dalcin NULL, 1008f4259b30SLisandro Dalcin NULL, 1009f4259b30SLisandro Dalcin /*39*/ NULL, 1010f4259b30SLisandro Dalcin NULL, 1011f4259b30SLisandro Dalcin NULL, 1012d4002b98SHong Zhang MatGetValues_MPISELL, 1013d4002b98SHong Zhang MatCopy_MPISELL, 1014f4259b30SLisandro Dalcin /*44*/ NULL, 1015d4002b98SHong Zhang MatScale_MPISELL, 1016d4002b98SHong Zhang MatShift_MPISELL, 1017d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1018f4259b30SLisandro Dalcin NULL, 1019d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1020f4259b30SLisandro Dalcin NULL, 1021f4259b30SLisandro Dalcin NULL, 1022f4259b30SLisandro Dalcin NULL, 1023f4259b30SLisandro Dalcin NULL, 1024d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1025f4259b30SLisandro Dalcin NULL, 1026d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1027f4259b30SLisandro Dalcin NULL, 1028f4259b30SLisandro Dalcin NULL, 1029f4259b30SLisandro Dalcin /*59*/ NULL, 1030d4002b98SHong Zhang MatDestroy_MPISELL, 1031d4002b98SHong Zhang MatView_MPISELL, 1032f4259b30SLisandro Dalcin NULL, 1033f4259b30SLisandro Dalcin NULL, 1034f4259b30SLisandro Dalcin /*64*/ NULL, 1035f4259b30SLisandro Dalcin NULL, 1036f4259b30SLisandro Dalcin NULL, 1037f4259b30SLisandro Dalcin NULL, 1038f4259b30SLisandro Dalcin NULL, 1039f4259b30SLisandro Dalcin /*69*/ NULL, 1040f4259b30SLisandro Dalcin NULL, 1041f4259b30SLisandro Dalcin NULL, 1042f4259b30SLisandro Dalcin NULL, 1043f4259b30SLisandro Dalcin NULL, 1044f4259b30SLisandro Dalcin NULL, 1045d4002b98SHong Zhang /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */ 1046d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1047f4259b30SLisandro Dalcin NULL, 1048f4259b30SLisandro Dalcin NULL, 1049f4259b30SLisandro Dalcin NULL, 1050f4259b30SLisandro Dalcin /*80*/ NULL, 1051f4259b30SLisandro Dalcin NULL, 1052f4259b30SLisandro Dalcin NULL, 1053f4259b30SLisandro Dalcin /*83*/ NULL, 1054f4259b30SLisandro Dalcin NULL, 1055f4259b30SLisandro Dalcin NULL, 1056f4259b30SLisandro Dalcin NULL, 1057f4259b30SLisandro Dalcin NULL, 1058f4259b30SLisandro Dalcin NULL, 1059f4259b30SLisandro Dalcin /*89*/ NULL, 1060f4259b30SLisandro Dalcin NULL, 1061f4259b30SLisandro Dalcin NULL, 1062f4259b30SLisandro Dalcin NULL, 1063f4259b30SLisandro Dalcin NULL, 1064f4259b30SLisandro Dalcin /*94*/ NULL, 1065f4259b30SLisandro Dalcin NULL, 1066f4259b30SLisandro Dalcin NULL, 1067f4259b30SLisandro Dalcin NULL, 1068f4259b30SLisandro Dalcin NULL, 1069f4259b30SLisandro Dalcin /*99*/ NULL, 1070f4259b30SLisandro Dalcin NULL, 1071f4259b30SLisandro Dalcin NULL, 1072d4002b98SHong Zhang MatConjugate_MPISELL, 1073f4259b30SLisandro Dalcin NULL, 1074f4259b30SLisandro Dalcin /*104*/NULL, 1075d4002b98SHong Zhang MatRealPart_MPISELL, 1076d4002b98SHong Zhang MatImaginaryPart_MPISELL, 1077f4259b30SLisandro Dalcin NULL, 1078f4259b30SLisandro Dalcin NULL, 1079f4259b30SLisandro Dalcin /*109*/NULL, 1080f4259b30SLisandro Dalcin NULL, 1081f4259b30SLisandro Dalcin NULL, 1082f4259b30SLisandro Dalcin NULL, 1083d4002b98SHong Zhang MatMissingDiagonal_MPISELL, 1084f4259b30SLisandro Dalcin /*114*/NULL, 1085f4259b30SLisandro Dalcin NULL, 1086d4002b98SHong Zhang MatGetGhosts_MPISELL, 1087f4259b30SLisandro Dalcin NULL, 1088f4259b30SLisandro Dalcin NULL, 1089f4259b30SLisandro Dalcin /*119*/NULL, 1090f4259b30SLisandro Dalcin NULL, 1091f4259b30SLisandro Dalcin NULL, 1092f4259b30SLisandro Dalcin NULL, 1093f4259b30SLisandro Dalcin NULL, 1094f4259b30SLisandro Dalcin /*124*/NULL, 1095f4259b30SLisandro Dalcin NULL, 1096d4002b98SHong Zhang MatInvertBlockDiagonal_MPISELL, 1097f4259b30SLisandro Dalcin NULL, 1098f4259b30SLisandro Dalcin NULL, 1099f4259b30SLisandro Dalcin /*129*/NULL, 1100f4259b30SLisandro Dalcin NULL, 1101f4259b30SLisandro Dalcin NULL, 1102f4259b30SLisandro Dalcin NULL, 1103f4259b30SLisandro Dalcin NULL, 1104f4259b30SLisandro Dalcin /*134*/NULL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin NULL, 1107f4259b30SLisandro Dalcin NULL, 1108f4259b30SLisandro Dalcin NULL, 1109f4259b30SLisandro Dalcin /*139*/NULL, 1110f4259b30SLisandro Dalcin NULL, 1111f4259b30SLisandro Dalcin NULL, 1112d4002b98SHong Zhang MatFDColoringSetUp_MPIXAIJ, 1113f4259b30SLisandro Dalcin NULL, 1114d70f29a3SPierre Jolivet /*144*/NULL, 1115d70f29a3SPierre Jolivet NULL, 1116d70f29a3SPierre Jolivet NULL, 1117*99a7f59eSMark Adams NULL, 1118*99a7f59eSMark Adams NULL, 1119d70f29a3SPierre Jolivet NULL 1120d4002b98SHong Zhang }; 1121d4002b98SHong Zhang 1122d4002b98SHong Zhang /* ----------------------------------------------------------------------------------------*/ 1123d4002b98SHong Zhang 1124d4002b98SHong Zhang PetscErrorCode MatStoreValues_MPISELL(Mat mat) 1125d4002b98SHong Zhang { 1126d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1127d4002b98SHong Zhang 1128d4002b98SHong Zhang PetscFunctionBegin; 11299566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 11309566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 1131d4002b98SHong Zhang PetscFunctionReturn(0); 1132d4002b98SHong Zhang } 1133d4002b98SHong Zhang 1134d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 1135d4002b98SHong Zhang { 1136d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1137d4002b98SHong Zhang 1138d4002b98SHong Zhang PetscFunctionBegin; 11399566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 11409566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 1141d4002b98SHong Zhang PetscFunctionReturn(0); 1142d4002b98SHong Zhang } 1143d4002b98SHong Zhang 1144d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[]) 1145d4002b98SHong Zhang { 1146d4002b98SHong Zhang Mat_MPISELL *b; 1147d4002b98SHong Zhang 1148d4002b98SHong Zhang PetscFunctionBegin; 11499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 11509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1151d4002b98SHong Zhang b = (Mat_MPISELL*)B->data; 1152d4002b98SHong Zhang 1153d4002b98SHong Zhang if (!B->preallocated) { 1154d4002b98SHong Zhang /* Explicitly create 2 MATSEQSELL matrices. */ 11559566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 11569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 11579566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A,B,B)); 11589566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQSELL)); 11599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 11609566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 11619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N)); 11629566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B,B,B)); 11639566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQSELL)); 11649566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 1165d4002b98SHong Zhang } 1166d4002b98SHong Zhang 11679566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A,d_rlenmax,d_rlen)); 11689566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B,o_rlenmax,o_rlen)); 1169d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 1170d4002b98SHong Zhang B->was_assembled = PETSC_FALSE; 1171d4002b98SHong Zhang /* 1172d4002b98SHong Zhang critical for MatAssemblyEnd to work. 1173d4002b98SHong Zhang MatAssemblyBegin checks it to set up was_assembled 1174d4002b98SHong Zhang and MatAssemblyEnd checks was_assembled to determine whether to build garray 1175d4002b98SHong Zhang */ 1176d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1177d4002b98SHong Zhang PetscFunctionReturn(0); 1178d4002b98SHong Zhang } 1179d4002b98SHong Zhang 1180d4002b98SHong Zhang PetscErrorCode MatDuplicate_MPISELL(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1181d4002b98SHong Zhang { 1182d4002b98SHong Zhang Mat mat; 1183d4002b98SHong Zhang Mat_MPISELL *a,*oldmat=(Mat_MPISELL*)matin->data; 1184d4002b98SHong Zhang 1185d4002b98SHong Zhang PetscFunctionBegin; 1186f4259b30SLisandro Dalcin *newmat = NULL; 11879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 11889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 11899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat,matin,matin)); 11909566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 1191d4002b98SHong Zhang a = (Mat_MPISELL*)mat->data; 1192d4002b98SHong Zhang 1193d4002b98SHong Zhang mat->factortype = matin->factortype; 1194d4002b98SHong Zhang mat->assembled = PETSC_TRUE; 1195d4002b98SHong Zhang mat->insertmode = NOT_SET_VALUES; 1196d4002b98SHong Zhang mat->preallocated = PETSC_TRUE; 1197d4002b98SHong Zhang 1198d4002b98SHong Zhang a->size = oldmat->size; 1199d4002b98SHong Zhang a->rank = oldmat->rank; 1200d4002b98SHong Zhang a->donotstash = oldmat->donotstash; 1201d4002b98SHong Zhang a->roworiented = oldmat->roworiented; 1202f4259b30SLisandro Dalcin a->rowindices = NULL; 1203f4259b30SLisandro Dalcin a->rowvalues = NULL; 1204d4002b98SHong Zhang a->getrowactive = PETSC_FALSE; 1205d4002b98SHong Zhang 12069566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 12079566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 1208d4002b98SHong Zhang 1209d4002b98SHong Zhang if (oldmat->colmap) { 1210d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 12119566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 1212d4002b98SHong Zhang #else 12139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&a->colmap)); 12149566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N)*sizeof(PetscInt))); 12159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,mat->cmap->N)); 1216d4002b98SHong Zhang #endif 1217f4259b30SLisandro Dalcin } else a->colmap = NULL; 1218d4002b98SHong Zhang if (oldmat->garray) { 1219d4002b98SHong Zhang PetscInt len; 1220d4002b98SHong Zhang len = oldmat->B->cmap->n; 12219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len+1,&a->garray)); 12229566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 12239566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 1224f4259b30SLisandro Dalcin } else a->garray = NULL; 1225d4002b98SHong Zhang 12269566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 12279566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 12289566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 12299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 12309566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 12319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 12329566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 12339566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 12349566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 1235d4002b98SHong Zhang *newmat = mat; 1236d4002b98SHong Zhang PetscFunctionReturn(0); 1237d4002b98SHong Zhang } 1238d4002b98SHong Zhang 1239d4002b98SHong Zhang /*@C 1240d4002b98SHong Zhang MatMPISELLSetPreallocation - Preallocates memory for a sparse parallel matrix in sell format. 1241d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 1242d4002b98SHong Zhang setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz). 1243d4002b98SHong Zhang 1244d083f849SBarry Smith Collective 1245d4002b98SHong Zhang 1246d4002b98SHong Zhang Input Parameters: 1247d4002b98SHong Zhang + B - the matrix 1248d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1249d4002b98SHong Zhang (same value is used for all local rows) 1250d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1251d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1252d4002b98SHong Zhang or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure. 1253d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1254d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1255d4002b98SHong Zhang the diagonal entry even if it is zero. 1256d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1257d4002b98SHong Zhang submatrix (same value is used for all local rows). 1258d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1259d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1260d4002b98SHong Zhang each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero 1261d4002b98SHong Zhang structure. The size of this array is equal to the number 1262d4002b98SHong Zhang of local rows, i.e 'm'. 1263d4002b98SHong Zhang 1264d4002b98SHong Zhang If the *_nnz parameter is given then the *_nz parameter is ignored 1265d4002b98SHong Zhang 1266d4002b98SHong Zhang The stored row and column indices begin with zero. 1267d4002b98SHong Zhang 1268d4002b98SHong Zhang The parallel matrix is partitioned such that the first m0 rows belong to 1269d4002b98SHong Zhang process 0, the next m1 rows belong to process 1, the next m2 rows belong 1270d4002b98SHong Zhang to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 1271d4002b98SHong Zhang 1272d4002b98SHong Zhang The DIAGONAL portion of the local submatrix of a processor can be defined 1273d4002b98SHong Zhang as the submatrix which is obtained by extraction the part corresponding to 1274d4002b98SHong Zhang the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 1275d4002b98SHong Zhang first row that belongs to the processor, r2 is the last row belonging to 1276d4002b98SHong Zhang the this processor, and c1-c2 is range of indices of the local part of a 1277d4002b98SHong Zhang vector suitable for applying the matrix to. This is an mxn matrix. In the 1278d4002b98SHong Zhang common case of a square matrix, the row and column ranges are the same and 1279d4002b98SHong Zhang the DIAGONAL part is also square. The remaining portion of the local 1280d4002b98SHong Zhang submatrix (mxN) constitute the OFF-DIAGONAL portion. 1281d4002b98SHong Zhang 1282d4002b98SHong Zhang If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored. 1283d4002b98SHong Zhang 1284d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 1285d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1286d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 1287d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 1288d4002b98SHong Zhang 1289d4002b98SHong Zhang Example usage: 1290d4002b98SHong Zhang 1291d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1292d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1293d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1294d4002b98SHong Zhang as follows: 1295d4002b98SHong Zhang 1296d4002b98SHong Zhang .vb 1297d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1298d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1299d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1300d4002b98SHong Zhang ------------------------------------- 1301d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1302d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1303d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1304d4002b98SHong Zhang ------------------------------------- 1305d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1306d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1307d4002b98SHong Zhang .ve 1308d4002b98SHong Zhang 1309d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1310d4002b98SHong Zhang 1311d4002b98SHong Zhang .vb 1312d4002b98SHong Zhang A B C 1313d4002b98SHong Zhang D E F 1314d4002b98SHong Zhang G H I 1315d4002b98SHong Zhang .ve 1316d4002b98SHong Zhang 1317d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1318d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1319d4002b98SHong Zhang 1320d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1321d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1322d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1323d4002b98SHong Zhang 1324d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1325d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1326d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1327d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1328d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1329d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1330d4002b98SHong Zhang 1331d4002b98SHong Zhang When d_nz, o_nz parameters are specified, d_nz storage elements are 1332d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_nz 1333d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1334d4002b98SHong Zhang One way to choose d_nz and o_nz is to use the max nonzerors per local 1335d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1336d4002b98SHong Zhang In this case, the values of d_nz,o_nz are: 1337d4002b98SHong Zhang .vb 1338d4002b98SHong Zhang proc0 : dnz = 2, o_nz = 2 1339d4002b98SHong Zhang proc1 : dnz = 3, o_nz = 2 1340d4002b98SHong Zhang proc2 : dnz = 1, o_nz = 4 1341d4002b98SHong Zhang .ve 1342d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1343d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1344d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1345d4002b98SHong Zhang 34 values. 1346d4002b98SHong Zhang 1347d4002b98SHong Zhang When d_nnz, o_nnz parameters are specified, the storage is specified 1348a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1349d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1350d4002b98SHong Zhang .vb 1351d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1352d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1353d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1354d4002b98SHong Zhang .ve 1355d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1356d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1357d4002b98SHong Zhang 1358d4002b98SHong Zhang Level: intermediate 1359d4002b98SHong Zhang 1360db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`, 1361db781477SPatrick Sanan `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()` 1362d4002b98SHong Zhang @*/ 1363d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1364d4002b98SHong Zhang { 1365d4002b98SHong Zhang PetscFunctionBegin; 1366d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1367d4002b98SHong Zhang PetscValidType(B,1); 1368cac4c232SBarry Smith PetscTryMethod(B,"MatMPISELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,d_nz,d_nnz,o_nz,o_nnz)); 1369d4002b98SHong Zhang PetscFunctionReturn(0); 1370d4002b98SHong Zhang } 1371d4002b98SHong Zhang 1372ed73aabaSBarry Smith /*MC 1373ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1374ed73aabaSBarry Smith based on the sliced Ellpack format 1375ed73aabaSBarry Smith 1376ed73aabaSBarry Smith Options Database Keys: 1377ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 1378ed73aabaSBarry Smith 1379ed73aabaSBarry Smith Level: beginner 1380ed73aabaSBarry Smith 1381db781477SPatrick Sanan .seealso: `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 1382ed73aabaSBarry Smith M*/ 1383ed73aabaSBarry Smith 1384d4002b98SHong Zhang /*@C 1385d4002b98SHong Zhang MatCreateSELL - Creates a sparse parallel matrix in SELL format. 1386d4002b98SHong Zhang 1387d083f849SBarry Smith Collective 1388d4002b98SHong Zhang 1389d4002b98SHong Zhang Input Parameters: 1390d4002b98SHong Zhang + comm - MPI communicator 1391d4002b98SHong Zhang . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1392d4002b98SHong Zhang This value should be the same as the local size used in creating the 1393d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1394d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 1395d4002b98SHong Zhang x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 1396d4002b98SHong Zhang calculated if N is given) For square matrices n is almost always m. 1397d4002b98SHong Zhang . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1398d4002b98SHong Zhang . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1399d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1400d4002b98SHong Zhang (same value is used for all local rows) 1401d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1402d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1403d4002b98SHong Zhang or NULL, if d_rlenmax is used to specify the nonzero structure. 1404d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1405d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1406d4002b98SHong Zhang submatrix (same value is used for all local rows). 1407d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1408d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1409d4002b98SHong Zhang each row) or NULL, if o_rlenmax is used to specify the nonzero 1410d4002b98SHong Zhang structure. The size of this array is equal to the number 1411d4002b98SHong Zhang of local rows, i.e 'm'. 1412d4002b98SHong Zhang 1413d4002b98SHong Zhang Output Parameter: 1414d4002b98SHong Zhang . A - the matrix 1415d4002b98SHong Zhang 1416d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1417f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 1418d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 1419d4002b98SHong Zhang 1420d4002b98SHong Zhang Notes: 1421d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1422d4002b98SHong Zhang 1423d4002b98SHong Zhang m,n,M,N parameters specify the size of the matrix, and its partitioning across 1424d4002b98SHong Zhang processors, while d_rlenmax,d_rlen,o_rlenmax,o_rlen parameters specify the approximate 1425d4002b98SHong Zhang storage requirements for this matrix. 1426d4002b98SHong Zhang 1427d4002b98SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one 1428d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1429d4002b98SHong Zhang that argument. 1430d4002b98SHong Zhang 1431d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1432d4002b98SHong Zhang (possibly both). 1433d4002b98SHong Zhang 1434d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1435d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1436d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1437d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 1438d4002b98SHong Zhang values corresponding to [m x N] submatrix. 1439d4002b98SHong Zhang 1440d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1441d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 1442d4002b98SHong Zhang partition etc.. where n0,n1,n2... are the input parameter 'n'. 1443d4002b98SHong Zhang 1444d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 1445d4002b98SHong Zhang is the submatrix corresponding to the rows and columns m,n 1446d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1447d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1448d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1449d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1450d4002b98SHong Zhang illustrates this concept. 1451d4002b98SHong Zhang 1452d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1453d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1454d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1455d4002b98SHong Zhang local matrix (a rectangular submatrix). 1456d4002b98SHong Zhang 1457d4002b98SHong Zhang If o_rlen, d_rlen are specified, then o_rlenmax, and d_rlenmax are ignored. 1458d4002b98SHong Zhang 1459d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 1460d4002b98SHong Zhang type SEQSELL is returned. If a matrix of type MATMPISELL is desired for this 1461d4002b98SHong Zhang type of communicator, use the construction mechanism: 1462d4002b98SHong Zhang MatCreate(...,&A); MatSetType(A,MATMPISELL); MatSetSizes(A, m,n,M,N); MatMPISELLSetPreallocation(A,...); 1463d4002b98SHong Zhang 1464d4002b98SHong Zhang Options Database Keys: 1465d4002b98SHong Zhang - -mat_sell_oneindex - Internally use indexing starting at 1 1466d4002b98SHong Zhang rather than 0. Note that when calling MatSetValues(), 1467d4002b98SHong Zhang the user still MUST index entries starting at 0! 1468d4002b98SHong Zhang 1469d4002b98SHong Zhang Example usage: 1470d4002b98SHong Zhang 1471d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1472d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1473d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1474d4002b98SHong Zhang as follows: 1475d4002b98SHong Zhang 1476d4002b98SHong Zhang .vb 1477d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1478d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1479d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1480d4002b98SHong Zhang ------------------------------------- 1481d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1482d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1483d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1484d4002b98SHong Zhang ------------------------------------- 1485d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1486d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1487d4002b98SHong Zhang .ve 1488d4002b98SHong Zhang 1489d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1490d4002b98SHong Zhang 1491d4002b98SHong Zhang .vb 1492d4002b98SHong Zhang A B C 1493d4002b98SHong Zhang D E F 1494d4002b98SHong Zhang G H I 1495d4002b98SHong Zhang .ve 1496d4002b98SHong Zhang 1497d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1498d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1499d4002b98SHong Zhang 1500d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1501d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1502d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1503d4002b98SHong Zhang 1504d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1505d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1506d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1507d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1508d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1509d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1510d4002b98SHong Zhang 1511d4002b98SHong Zhang When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 1512d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_rlenmax 1513d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1514d4002b98SHong Zhang One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local 1515d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1516d4002b98SHong Zhang In this case, the values of d_rlenmax,o_rlenmax are: 1517d4002b98SHong Zhang .vb 1518d4002b98SHong Zhang proc0 : d_rlenmax = 2, o_rlenmax = 2 1519d4002b98SHong Zhang proc1 : d_rlenmax = 3, o_rlenmax = 2 1520d4002b98SHong Zhang proc2 : d_rlenmax = 1, o_rlenmax = 4 1521d4002b98SHong Zhang .ve 1522d4002b98SHong Zhang We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 1523d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1524d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1525d4002b98SHong Zhang 34 values. 1526d4002b98SHong Zhang 1527d4002b98SHong Zhang When d_rlen, o_rlen parameters are specified, the storage is specified 1528a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1529d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1530d4002b98SHong Zhang .vb 1531d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1532d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1533d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1534d4002b98SHong Zhang .ve 1535d4002b98SHong Zhang Here the space allocated is still 37 though there are 34 nonzeros because 1536d4002b98SHong Zhang the allocation is always done according to rlenmax. 1537d4002b98SHong Zhang 1538d4002b98SHong Zhang Level: intermediate 1539d4002b98SHong Zhang 1540db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`, 1541db781477SPatrick Sanan `MATMPISELL`, `MatCreateMPISELLWithArrays()` 1542d4002b98SHong Zhang @*/ 1543d4002b98SHong Zhang PetscErrorCode MatCreateSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[],Mat *A) 1544d4002b98SHong Zhang { 1545d4002b98SHong Zhang PetscMPIInt size; 1546d4002b98SHong Zhang 1547d4002b98SHong Zhang PetscFunctionBegin; 15489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 15499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 15509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 1551d4002b98SHong Zhang if (size > 1) { 15529566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPISELL)); 15539566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A,d_rlenmax,d_rlen,o_rlenmax,o_rlen)); 1554d4002b98SHong Zhang } else { 15559566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSELL)); 15569566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A,d_rlenmax,d_rlen)); 1557d4002b98SHong Zhang } 1558d4002b98SHong Zhang PetscFunctionReturn(0); 1559d4002b98SHong Zhang } 1560d4002b98SHong Zhang 1561d4002b98SHong Zhang PetscErrorCode MatMPISELLGetSeqSELL(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 1562d4002b98SHong Zhang { 1563d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1564d4002b98SHong Zhang PetscBool flg; 1565d4002b98SHong Zhang 1566d4002b98SHong Zhang PetscFunctionBegin; 15679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&flg)); 156828b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPISELL matrix as input"); 1569d4002b98SHong Zhang if (Ad) *Ad = a->A; 1570d4002b98SHong Zhang if (Ao) *Ao = a->B; 1571d4002b98SHong Zhang if (colmap) *colmap = a->garray; 1572d4002b98SHong Zhang PetscFunctionReturn(0); 1573d4002b98SHong Zhang } 1574d4002b98SHong Zhang 1575d4002b98SHong Zhang /*@C 1576d4002b98SHong Zhang MatMPISELLGetLocalMatCondensed - Creates a SeqSELL matrix from an MATMPISELL matrix by taking all its local rows and NON-ZERO columns 1577d4002b98SHong Zhang 1578d4002b98SHong Zhang Not Collective 1579d4002b98SHong Zhang 1580d4002b98SHong Zhang Input Parameters: 1581d4002b98SHong Zhang + A - the matrix 1582d4002b98SHong Zhang . scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 1583d4002b98SHong Zhang - row, col - index sets of rows and columns to extract (or NULL) 1584d4002b98SHong Zhang 1585d4002b98SHong Zhang Output Parameter: 1586d4002b98SHong Zhang . A_loc - the local sequential matrix generated 1587d4002b98SHong Zhang 1588d4002b98SHong Zhang Level: developer 1589d4002b98SHong Zhang 1590db781477SPatrick Sanan .seealso: `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()` 1591d4002b98SHong Zhang 1592d4002b98SHong Zhang @*/ 1593d4002b98SHong Zhang PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc) 1594d4002b98SHong Zhang { 1595d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1596d4002b98SHong Zhang PetscInt i,start,end,ncols,nzA,nzB,*cmap,imark,*idx; 1597d4002b98SHong Zhang IS isrowa,iscola; 1598d4002b98SHong Zhang Mat *aloc; 1599d4002b98SHong Zhang PetscBool match; 1600d4002b98SHong Zhang 1601d4002b98SHong Zhang PetscFunctionBegin; 16029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&match)); 160328b400f6SJacob Faibussowitsch PetscCheck(match,PetscObjectComm((PetscObject)A), PETSC_ERR_SUP,"Requires MATMPISELL matrix as input"); 16049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed,A,0,0,0)); 1605d4002b98SHong Zhang if (!row) { 1606d4002b98SHong Zhang start = A->rmap->rstart; end = A->rmap->rend; 16079566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa)); 1608d4002b98SHong Zhang } else { 1609d4002b98SHong Zhang isrowa = *row; 1610d4002b98SHong Zhang } 1611d4002b98SHong Zhang if (!col) { 1612d4002b98SHong Zhang start = A->cmap->rstart; 1613d4002b98SHong Zhang cmap = a->garray; 1614d4002b98SHong Zhang nzA = a->A->cmap->n; 1615d4002b98SHong Zhang nzB = a->B->cmap->n; 16169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA+nzB, &idx)); 1617d4002b98SHong Zhang ncols = 0; 1618d4002b98SHong Zhang for (i=0; i<nzB; i++) { 1619d4002b98SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 1620d4002b98SHong Zhang else break; 1621d4002b98SHong Zhang } 1622d4002b98SHong Zhang imark = i; 1623d4002b98SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; 1624d4002b98SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; 16259566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&iscola)); 1626d4002b98SHong Zhang } else { 1627d4002b98SHong Zhang iscola = *col; 1628d4002b98SHong Zhang } 1629d4002b98SHong Zhang if (scall != MAT_INITIAL_MATRIX) { 16309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1,&aloc)); 1631d4002b98SHong Zhang aloc[0] = *A_loc; 1632d4002b98SHong Zhang } 16339566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A,1,&isrowa,&iscola,scall,&aloc)); 1634d4002b98SHong Zhang *A_loc = aloc[0]; 16359566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1636d4002b98SHong Zhang if (!row) { 16379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowa)); 1638d4002b98SHong Zhang } 1639d4002b98SHong Zhang if (!col) { 16409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscola)); 1641d4002b98SHong Zhang } 16429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed,A,0,0,0)); 1643d4002b98SHong Zhang PetscFunctionReturn(0); 1644d4002b98SHong Zhang } 1645d4002b98SHong Zhang 1646d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1647d4002b98SHong Zhang 1648d4002b98SHong Zhang PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1649d4002b98SHong Zhang { 1650d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1651d4002b98SHong Zhang Mat B; 1652d4002b98SHong Zhang Mat_MPIAIJ *b; 1653d4002b98SHong Zhang 1654d4002b98SHong Zhang PetscFunctionBegin; 165528b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1656d4002b98SHong Zhang 165794a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 165894a8b381SRichard Tran Mills B = *newmat; 165994a8b381SRichard Tran Mills } else { 16609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 16619566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 16629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 16639566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 16649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 16659566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 166694a8b381SRichard Tran Mills } 1667d4002b98SHong Zhang b = (Mat_MPIAIJ*) B->data; 166894a8b381SRichard Tran Mills 166994a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16709566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16719566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 167294a8b381SRichard Tran Mills } else { 16739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16759566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16769566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16779566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 16799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 16809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 168294a8b381SRichard Tran Mills } 1683d4002b98SHong Zhang 1684d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16859566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1686d4002b98SHong Zhang } else { 1687d4002b98SHong Zhang *newmat = B; 1688d4002b98SHong Zhang } 1689d4002b98SHong Zhang PetscFunctionReturn(0); 1690d4002b98SHong Zhang } 1691d4002b98SHong Zhang 1692d4002b98SHong Zhang PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1693d4002b98SHong Zhang { 1694d4002b98SHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 1695d4002b98SHong Zhang Mat B; 1696d4002b98SHong Zhang Mat_MPISELL *b; 1697d4002b98SHong Zhang 1698d4002b98SHong Zhang PetscFunctionBegin; 169928b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1700d4002b98SHong Zhang 170194a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 170294a8b381SRichard Tran Mills B = *newmat; 170394a8b381SRichard Tran Mills } else { 17049566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 17059566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPISELL)); 17069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 17079566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 17089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 17099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 171094a8b381SRichard Tran Mills } 1711d4002b98SHong Zhang b = (Mat_MPISELL*) B->data; 171294a8b381SRichard Tran Mills 171394a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17149566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17159566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 171694a8b381SRichard Tran Mills } else { 17179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17199566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(A)); 17209566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17219566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 17239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 17249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 17259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 172694a8b381SRichard Tran Mills } 1727d4002b98SHong Zhang 1728d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17299566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1730d4002b98SHong Zhang } else { 1731d4002b98SHong Zhang *newmat = B; 1732d4002b98SHong Zhang } 1733d4002b98SHong Zhang PetscFunctionReturn(0); 1734d4002b98SHong Zhang } 1735d4002b98SHong Zhang 1736d4002b98SHong Zhang PetscErrorCode MatSOR_MPISELL(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1737d4002b98SHong Zhang { 1738d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 1739f4259b30SLisandro Dalcin Vec bb1=NULL; 1740d4002b98SHong Zhang 1741d4002b98SHong Zhang PetscFunctionBegin; 1742d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1744d4002b98SHong Zhang PetscFunctionReturn(0); 1745d4002b98SHong Zhang } 1746d4002b98SHong Zhang 1747d4002b98SHong Zhang if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) { 17489566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 1749d4002b98SHong Zhang } 1750d4002b98SHong Zhang 1751d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1752d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1754d4002b98SHong Zhang its--; 1755d4002b98SHong Zhang } 1756d4002b98SHong Zhang 1757d4002b98SHong Zhang while (its--) { 17589566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17599566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1760d4002b98SHong Zhang 1761d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17629566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17639566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1764d4002b98SHong Zhang 1765d4002b98SHong Zhang /* local sweep */ 17669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 1767d4002b98SHong Zhang } 1768d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1769d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17709566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1771d4002b98SHong Zhang its--; 1772d4002b98SHong Zhang } 1773d4002b98SHong Zhang while (its--) { 17749566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17759566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1776d4002b98SHong Zhang 1777d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17789566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17799566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1780d4002b98SHong Zhang 1781d4002b98SHong Zhang /* local sweep */ 17829566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 1783d4002b98SHong Zhang } 1784d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1785d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1787d4002b98SHong Zhang its--; 1788d4002b98SHong Zhang } 1789d4002b98SHong Zhang while (its--) { 17909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17919566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1792d4002b98SHong Zhang 1793d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17949566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17959566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1796d4002b98SHong Zhang 1797d4002b98SHong Zhang /* local sweep */ 17989566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 1799d4002b98SHong Zhang } 1800d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel SOR not supported"); 1801d4002b98SHong Zhang 18029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1803d4002b98SHong Zhang 1804d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 1805d4002b98SHong Zhang PetscFunctionReturn(0); 1806d4002b98SHong Zhang } 1807d4002b98SHong Zhang 1808d4002b98SHong Zhang /*MC 1809d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1810d4002b98SHong Zhang 1811d4002b98SHong Zhang Options Database Keys: 1812d4002b98SHong Zhang . -mat_type MPISELL - sets the matrix type to "MPISELL" during a call to MatSetFromOptions() 1813d4002b98SHong Zhang 1814d4002b98SHong Zhang Level: beginner 1815d4002b98SHong Zhang 1816db781477SPatrick Sanan .seealso: `MatCreateSELL()` 1817d4002b98SHong Zhang M*/ 1818d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1819d4002b98SHong Zhang { 1820d4002b98SHong Zhang Mat_MPISELL *b; 1821d4002b98SHong Zhang PetscMPIInt size; 1822d4002b98SHong Zhang 1823d4002b98SHong Zhang PetscFunctionBegin; 18249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 18259566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 1826d4002b98SHong Zhang B->data = (void*)b; 18279566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 1828d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1829d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1830d4002b98SHong Zhang b->size = size; 18319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 1832d4002b98SHong Zhang /* build cache for off array entries formed */ 18339566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 1834d4002b98SHong Zhang 1835d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1836f4259b30SLisandro Dalcin b->colmap = NULL; 1837f4259b30SLisandro Dalcin b->garray = NULL; 1838d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1839d4002b98SHong Zhang 1840d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1841d4002b98SHong Zhang b->lvec = NULL; 1842d4002b98SHong Zhang b->Mvctx = NULL; 1843d4002b98SHong Zhang 1844d4002b98SHong Zhang /* stuff for MatGetRow() */ 1845f4259b30SLisandro Dalcin b->rowindices = NULL; 1846f4259b30SLisandro Dalcin b->rowvalues = NULL; 1847d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1848d4002b98SHong Zhang 18499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISELL)); 18509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISELL)); 18519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_MPISELL)); 18529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISELLSetPreallocation_C",MatMPISELLSetPreallocation_MPISELL)); 18539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisell_mpiaij_C",MatConvert_MPISELL_MPIAIJ)); 18549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPISELL)); 18559566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISELL)); 1856d4002b98SHong Zhang PetscFunctionReturn(0); 1857d4002b98SHong Zhang } 1858