1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 11d4002b98SHong Zhang This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 12d4002b98SHong Zhang and MATMPISELL otherwise. As a result, for single process communicators, 13d4002b98SHong Zhang MatSeqSELLSetPreallocation is supported, and similarly MatMPISELLSetPreallocation is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 18d4002b98SHong Zhang . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 22db781477SPatrick Sanan .seealso: `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL` 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25d4002b98SHong Zhang PetscErrorCode MatDiagonalSet_MPISELL(Mat Y,Vec D,InsertMode is) 26d4002b98SHong Zhang { 27d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A,D,is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y,D,is)); 34d4002b98SHong Zhang } 35d4002b98SHong Zhang PetscFunctionReturn(0); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43d4002b98SHong Zhang has an order N integer array but is fast to acess. 44d4002b98SHong Zhang */ 45d4002b98SHong Zhang PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d4002b98SHong Zhang { 47d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 48d4002b98SHong Zhang PetscInt n=sell->B->cmap->n,i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray,PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 539566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(n,mat->cmap->N+1,&sell->colmap)); 54d4002b98SHong Zhang for (i=0; i<n; i++) { 559566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(sell->colmap,sell->garray[i]+1,i+1,INSERT_VALUES)); 56d4002b98SHong Zhang } 57d4002b98SHong Zhang #else 589566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N+1,&sell->colmap)); 599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N+1)*sizeof(PetscInt))); 60d4002b98SHong Zhang for (i=0; i<n; i++) sell->colmap[sell->garray[i]] = i+1; 61d4002b98SHong Zhang #endif 62d4002b98SHong Zhang PetscFunctionReturn(0); 63d4002b98SHong Zhang } 64d4002b98SHong Zhang 65d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row,col,value,addv,orow,ocol) \ 66d4002b98SHong Zhang { \ 67d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 68d4002b98SHong Zhang else high1 = nrow1; \ 69d4002b98SHong Zhang lastcol1 = col; \ 70d4002b98SHong Zhang while (high1-low1 > 5) { \ 71d4002b98SHong Zhang t = (low1+high1)/2; \ 72d4002b98SHong Zhang if (*(cp1+8*t) > col) high1 = t; \ 73d4002b98SHong Zhang else low1 = t; \ 74d4002b98SHong Zhang } \ 75d4002b98SHong Zhang for (_i=low1; _i<high1; _i++) { \ 76d4002b98SHong Zhang if (*(cp1+8*_i) > col) break; \ 77d4002b98SHong Zhang if (*(cp1+8*_i) == col) { \ 78d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp1+8*_i) += value; \ 79d4002b98SHong Zhang else *(vp1+8*_i) = value; \ 80d4002b98SHong Zhang goto a_noinsert; \ 81d4002b98SHong Zhang } \ 82d4002b98SHong Zhang } \ 83d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low1 = 0; high1 = nrow1;goto a_noinsert;} \ 84d4002b98SHong Zhang if (nonew == 1) {low1 = 0; high1 = nrow1; goto a_noinsert;} \ 8508401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 86d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,am,1,nrow1,a->sliidx,row/8,row,col,a->colidx,a->val,cp1,vp1,nonew,MatScalar); \ 87d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 88d4002b98SHong Zhang for (ii=nrow1-1; ii>=_i; ii--) { \ 89d4002b98SHong Zhang *(cp1+8*(ii+1)) = *(cp1+8*ii); \ 90d4002b98SHong Zhang *(vp1+8*(ii+1)) = *(vp1+8*ii); \ 91d4002b98SHong Zhang } \ 92d4002b98SHong Zhang *(cp1+8*_i) = col; \ 93d4002b98SHong Zhang *(vp1+8*_i) = value; \ 94d4002b98SHong Zhang a->nz++; nrow1++; A->nonzerostate++; \ 95d4002b98SHong Zhang a_noinsert: ; \ 96d4002b98SHong Zhang a->rlen[row] = nrow1; \ 97d4002b98SHong Zhang } 98d4002b98SHong Zhang 99d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row,col,value,addv,orow,ocol) \ 100d4002b98SHong Zhang { \ 101d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 102d4002b98SHong Zhang else high2 = nrow2; \ 103d4002b98SHong Zhang lastcol2 = col; \ 104d4002b98SHong Zhang while (high2-low2 > 5) { \ 105d4002b98SHong Zhang t = (low2+high2)/2; \ 106d4002b98SHong Zhang if (*(cp2+8*t) > col) high2 = t; \ 107d4002b98SHong Zhang else low2 = t; \ 108d4002b98SHong Zhang } \ 109d4002b98SHong Zhang for (_i=low2; _i<high2; _i++) { \ 110d4002b98SHong Zhang if (*(cp2+8*_i) > col) break; \ 111d4002b98SHong Zhang if (*(cp2+8*_i) == col) { \ 112d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp2+8*_i) += value; \ 113d4002b98SHong Zhang else *(vp2+8*_i) = value; \ 114d4002b98SHong Zhang goto b_noinsert; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang } \ 117d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 118d4002b98SHong Zhang if (nonew == 1) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 11908401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 120d4002b98SHong Zhang MatSeqXSELLReallocateSELL(B,bm,1,nrow2,b->sliidx,row/8,row,col,b->colidx,b->val,cp2,vp2,nonew,MatScalar); \ 121d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 122d4002b98SHong Zhang for (ii=nrow2-1; ii>=_i; ii--) { \ 123d4002b98SHong Zhang *(cp2+8*(ii+1)) = *(cp2+8*ii); \ 124d4002b98SHong Zhang *(vp2+8*(ii+1)) = *(vp2+8*ii); \ 125d4002b98SHong Zhang } \ 126d4002b98SHong Zhang *(cp2+8*_i) = col; \ 127d4002b98SHong Zhang *(vp2+8*_i) = value; \ 128d4002b98SHong Zhang b->nz++; nrow2++; B->nonzerostate++; \ 129d4002b98SHong Zhang b_noinsert: ; \ 130d4002b98SHong Zhang b->rlen[row] = nrow2; \ 131d4002b98SHong Zhang } 132d4002b98SHong Zhang 133d4002b98SHong Zhang PetscErrorCode MatSetValues_MPISELL(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134d4002b98SHong Zhang { 135d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 136d4002b98SHong Zhang PetscScalar value; 137d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend,shift1,shift2; 138d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 139d4002b98SHong Zhang PetscBool roworiented=sell->roworiented; 140d4002b98SHong Zhang 141d4002b98SHong Zhang /* Some Variables required in the macro */ 142d4002b98SHong Zhang Mat A=sell->A; 143d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 144d4002b98SHong Zhang PetscBool ignorezeroentries=a->ignorezeroentries,found; 145d4002b98SHong Zhang Mat B=sell->B; 146d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 147d4002b98SHong Zhang PetscInt *cp1,*cp2,ii,_i,nrow1,nrow2,low1,high1,low2,high2,t,lastcol1,lastcol2; 148d4002b98SHong Zhang MatScalar *vp1,*vp2; 149d4002b98SHong Zhang 150d4002b98SHong Zhang PetscFunctionBegin; 151d4002b98SHong Zhang for (i=0; i<m; i++) { 152d4002b98SHong Zhang if (im[i] < 0) continue; 1536bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 154d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 155d4002b98SHong Zhang row = im[i] - rstart; 156d4002b98SHong Zhang lastcol1 = -1; 157d4002b98SHong Zhang shift1 = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 158d4002b98SHong Zhang cp1 = a->colidx+shift1; 159d4002b98SHong Zhang vp1 = a->val+shift1; 160d4002b98SHong Zhang nrow1 = a->rlen[row]; 161d4002b98SHong Zhang low1 = 0; 162d4002b98SHong Zhang high1 = nrow1; 163d4002b98SHong Zhang lastcol2 = -1; 164d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 165d4002b98SHong Zhang cp2 = b->colidx+shift2; 166d4002b98SHong Zhang vp2 = b->val+shift2; 167d4002b98SHong Zhang nrow2 = b->rlen[row]; 168d4002b98SHong Zhang low2 = 0; 169d4002b98SHong Zhang high2 = nrow2; 170d4002b98SHong Zhang 171d4002b98SHong Zhang for (j=0; j<n; j++) { 172d4002b98SHong Zhang if (roworiented) value = v[i*n+j]; 173d4002b98SHong Zhang else value = v[i+j*m]; 174d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 175d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 176d4002b98SHong Zhang col = in[j] - cstart; 177d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A,row,col,value,addv,im[i],in[j],cp1,vp1,lastcol1,low1,high1); /* set one value */ 178f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 179f7d195e4SLawrence Mitchell continue; 180f7d195e4SLawrence Mitchell } else { 181f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 182d4002b98SHong Zhang if (mat->was_assembled) { 183d4002b98SHong Zhang if (!sell->colmap) { 1849566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 185d4002b98SHong Zhang } 186d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 1879566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,in[j]+1,&col)); 188d4002b98SHong Zhang col--; 189d4002b98SHong Zhang #else 190d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 191d4002b98SHong Zhang #endif 192d4002b98SHong Zhang if (col < 0 && !((Mat_SeqSELL*)(sell->B->data))->nonew) { 1939566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 194d4002b98SHong Zhang col = in[j]; 195d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 196d4002b98SHong Zhang B = sell->B; 197d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 198d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 199d4002b98SHong Zhang cp2 = b->colidx+shift2; 200d4002b98SHong Zhang vp2 = b->val+shift2; 201d4002b98SHong Zhang nrow2 = b->rlen[row]; 202d4002b98SHong Zhang low2 = 0; 203d4002b98SHong Zhang high2 = nrow2; 204f7d195e4SLawrence Mitchell } else { 205f7d195e4SLawrence Mitchell PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 206f7d195e4SLawrence Mitchell } 207d4002b98SHong Zhang } else col = in[j]; 208d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B,row,col,value,addv,im[i],in[j],cp2,vp2,lastcol2,low2,high2); /* set one value */ 209d4002b98SHong Zhang } 210d4002b98SHong Zhang } 211d4002b98SHong Zhang } else { 21228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 213d4002b98SHong Zhang if (!sell->donotstash) { 214d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 215d4002b98SHong Zhang if (roworiented) { 2169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 217d4002b98SHong Zhang } else { 2189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 219d4002b98SHong Zhang } 220d4002b98SHong Zhang } 221d4002b98SHong Zhang } 222d4002b98SHong Zhang } 223d4002b98SHong Zhang PetscFunctionReturn(0); 224d4002b98SHong Zhang } 225d4002b98SHong Zhang 226d4002b98SHong Zhang PetscErrorCode MatGetValues_MPISELL(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 227d4002b98SHong Zhang { 228d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 229d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend; 230d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 231d4002b98SHong Zhang 232d4002b98SHong Zhang PetscFunctionBegin; 233d4002b98SHong Zhang for (i=0; i<m; i++) { 23454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 23554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 236d4002b98SHong Zhang if (idxm[i] >= rstart && idxm[i] < rend) { 237d4002b98SHong Zhang row = idxm[i] - rstart; 238d4002b98SHong Zhang for (j=0; j<n; j++) { 23954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 24054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 241d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 242d4002b98SHong Zhang col = idxn[j] - cstart; 2439566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A,1,&row,1,&col,v+i*n+j)); 244d4002b98SHong Zhang } else { 245d4002b98SHong Zhang if (!sell->colmap) { 2469566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 247d4002b98SHong Zhang } 248d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 2499566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,idxn[j]+1,&col)); 250d4002b98SHong Zhang col--; 251d4002b98SHong Zhang #else 252d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 253d4002b98SHong Zhang #endif 254d4002b98SHong Zhang if ((col < 0) || (sell->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 255d4002b98SHong Zhang else { 2569566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->B,1,&row,1,&col,v+i*n+j)); 257d4002b98SHong Zhang } 258d4002b98SHong Zhang } 259d4002b98SHong Zhang } 260d4002b98SHong Zhang } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 261d4002b98SHong Zhang } 262d4002b98SHong Zhang PetscFunctionReturn(0); 263d4002b98SHong Zhang } 264d4002b98SHong Zhang 265d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat,Vec,Vec); 266d4002b98SHong Zhang 267d4002b98SHong Zhang PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat,MatAssemblyType mode) 268d4002b98SHong Zhang { 269d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 270d4002b98SHong Zhang PetscInt nstash,reallocs; 271d4002b98SHong Zhang 272d4002b98SHong Zhang PetscFunctionBegin; 273d4002b98SHong Zhang if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 274d4002b98SHong Zhang 2759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 2769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 2779566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 278d4002b98SHong Zhang PetscFunctionReturn(0); 279d4002b98SHong Zhang } 280d4002b98SHong Zhang 281d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat,MatAssemblyType mode) 282d4002b98SHong Zhang { 283d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 284d4002b98SHong Zhang PetscMPIInt n; 285d4002b98SHong Zhang PetscInt i,flg; 286d4002b98SHong Zhang PetscInt *row,*col; 287d4002b98SHong Zhang PetscScalar *val; 288d4002b98SHong Zhang PetscBool other_disassembled; 289d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 290d4002b98SHong Zhang PetscFunctionBegin; 291d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 292d4002b98SHong Zhang while (1) { 2939566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 294d4002b98SHong Zhang if (!flg) break; 295d4002b98SHong Zhang 296d4002b98SHong Zhang for (i=0; i<n; i++) { /* assemble one by one */ 2979566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat,1,row+i,1,col+i,val+i,mat->insertmode)); 298d4002b98SHong Zhang } 299d4002b98SHong Zhang } 3009566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 301d4002b98SHong Zhang } 3029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A,mode)); 3039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A,mode)); 304d4002b98SHong Zhang 305d4002b98SHong Zhang /* 306d4002b98SHong Zhang determine if any processor has disassembled, if so we must 3076aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. 308d4002b98SHong Zhang */ 309d4002b98SHong Zhang /* 310d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 311d4002b98SHong Zhang no processor disassembled thus we can skip this stuff 312d4002b98SHong Zhang */ 313d4002b98SHong Zhang if (!((Mat_SeqSELL*)sell->B->data)->nonew) { 3141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 31508401ef6SPierre Jolivet PetscCheck(!mat->was_assembled || other_disassembled,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatDisAssemble not implemented yet"); 316d4002b98SHong Zhang } 317d4002b98SHong Zhang if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 3189566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPISELL(mat)); 319d4002b98SHong Zhang } 320d4002b98SHong Zhang /* 3219566063dSJacob Faibussowitsch PetscCall(MatSetOption(sell->B,MAT_USE_INODES,PETSC_FALSE)); 322d4002b98SHong Zhang */ 3239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B,mode)); 3249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B,mode)); 3259566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 326f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 328d4002b98SHong Zhang 329d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 330d4002b98SHong Zhang if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL*)(sell->A->data))->nonew) { 331d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 3321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 333d4002b98SHong Zhang } 334d4002b98SHong Zhang PetscFunctionReturn(0); 335d4002b98SHong Zhang } 336d4002b98SHong Zhang 337d4002b98SHong Zhang PetscErrorCode MatZeroEntries_MPISELL(Mat A) 338d4002b98SHong Zhang { 339d4002b98SHong Zhang Mat_MPISELL *l=(Mat_MPISELL*)A->data; 340d4002b98SHong Zhang 341d4002b98SHong Zhang PetscFunctionBegin; 3429566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3439566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 344d4002b98SHong Zhang PetscFunctionReturn(0); 345d4002b98SHong Zhang } 346d4002b98SHong Zhang 347d4002b98SHong Zhang PetscErrorCode MatMult_MPISELL(Mat A,Vec xx,Vec yy) 348d4002b98SHong Zhang { 349d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 350d4002b98SHong Zhang PetscInt nt; 351d4002b98SHong Zhang 352d4002b98SHong Zhang PetscFunctionBegin; 3539566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 35408401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",A->cmap->n,nt); 3559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3569566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 3579566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3589566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 359d4002b98SHong Zhang PetscFunctionReturn(0); 360d4002b98SHong Zhang } 361d4002b98SHong Zhang 362d4002b98SHong Zhang PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A,Vec bb,Vec xx) 363d4002b98SHong Zhang { 364d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 365d4002b98SHong Zhang 366d4002b98SHong Zhang PetscFunctionBegin; 3679566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A,bb,xx)); 368d4002b98SHong Zhang PetscFunctionReturn(0); 369d4002b98SHong Zhang } 370d4002b98SHong Zhang 371d4002b98SHong Zhang PetscErrorCode MatMultAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 372d4002b98SHong Zhang { 373d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 374d4002b98SHong Zhang 375d4002b98SHong Zhang PetscFunctionBegin; 3769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3779566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 3789566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3799566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 380d4002b98SHong Zhang PetscFunctionReturn(0); 381d4002b98SHong Zhang } 382d4002b98SHong Zhang 383d4002b98SHong Zhang PetscErrorCode MatMultTranspose_MPISELL(Mat A,Vec xx,Vec yy) 384d4002b98SHong Zhang { 385d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 386d4002b98SHong Zhang 387d4002b98SHong Zhang PetscFunctionBegin; 388d4002b98SHong Zhang /* do nondiagonal part */ 3899566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 390d4002b98SHong Zhang /* do local part */ 3919566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 392a29b4eb7SJunchao Zhang /* add partial results together */ 3939566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 3949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 395d4002b98SHong Zhang PetscFunctionReturn(0); 396d4002b98SHong Zhang } 397d4002b98SHong Zhang 398d4002b98SHong Zhang PetscErrorCode MatIsTranspose_MPISELL(Mat Amat,Mat Bmat,PetscReal tol,PetscBool *f) 399d4002b98SHong Zhang { 400d4002b98SHong Zhang MPI_Comm comm; 401d4002b98SHong Zhang Mat_MPISELL *Asell=(Mat_MPISELL*)Amat->data,*Bsell; 402d4002b98SHong Zhang Mat Adia=Asell->A,Bdia,Aoff,Boff,*Aoffs,*Boffs; 403d4002b98SHong Zhang IS Me,Notme; 404d4002b98SHong Zhang PetscInt M,N,first,last,*notme,i; 405d4002b98SHong Zhang PetscMPIInt size; 406d4002b98SHong Zhang 407d4002b98SHong Zhang PetscFunctionBegin; 408d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 409d4002b98SHong Zhang Bsell = (Mat_MPISELL*)Bmat->data; Bdia = Bsell->A; 4109566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia,Bdia,tol,f)); 411d4002b98SHong Zhang if (!*f) PetscFunctionReturn(0); 4129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat,&comm)); 4139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 414d4002b98SHong Zhang if (size == 1) PetscFunctionReturn(0); 415d4002b98SHong Zhang 416d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4179566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat,&M,&N)); 4189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat,&first,&last)); 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N-last+first,¬me)); 420d4002b98SHong Zhang for (i=0; i<first; i++) notme[i] = i; 421d4002b98SHong Zhang for (i=last; i<M; i++) notme[i-last+first] = i; 4229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,PETSC_COPY_VALUES,&Notme)); 4239566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me)); 4249566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs)); 425d4002b98SHong Zhang Aoff = Aoffs[0]; 4269566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs)); 427d4002b98SHong Zhang Boff = Boffs[0]; 4289566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff,Boff,tol,f)); 4299566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Aoffs)); 4309566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Boffs)); 4319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4339566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 434d4002b98SHong Zhang PetscFunctionReturn(0); 435d4002b98SHong Zhang } 436d4002b98SHong Zhang 437d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 438d4002b98SHong Zhang { 439d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 440d4002b98SHong Zhang 441d4002b98SHong Zhang PetscFunctionBegin; 442d4002b98SHong Zhang /* do nondiagonal part */ 4439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 444d4002b98SHong Zhang /* do local part */ 4459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 446e4a140f6SJunchao Zhang /* add partial results together */ 4479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 4489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 449d4002b98SHong Zhang PetscFunctionReturn(0); 450d4002b98SHong Zhang } 451d4002b98SHong Zhang 452d4002b98SHong Zhang /* 453d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 454d4002b98SHong Zhang diagonal block 455d4002b98SHong Zhang */ 456d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_MPISELL(Mat A,Vec v) 457d4002b98SHong Zhang { 458d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 459d4002b98SHong Zhang 460d4002b98SHong Zhang PetscFunctionBegin; 46108401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 462aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"row partition must equal col partition"); 4639566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A,v)); 464d4002b98SHong Zhang PetscFunctionReturn(0); 465d4002b98SHong Zhang } 466d4002b98SHong Zhang 467d4002b98SHong Zhang PetscErrorCode MatScale_MPISELL(Mat A,PetscScalar aa) 468d4002b98SHong Zhang { 469d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 470d4002b98SHong Zhang 471d4002b98SHong Zhang PetscFunctionBegin; 4729566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 4739566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 474d4002b98SHong Zhang PetscFunctionReturn(0); 475d4002b98SHong Zhang } 476d4002b98SHong Zhang 477d4002b98SHong Zhang PetscErrorCode MatDestroy_MPISELL(Mat mat) 478d4002b98SHong Zhang { 479d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 480d4002b98SHong Zhang 481d4002b98SHong Zhang PetscFunctionBegin; 482d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 483c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 484d4002b98SHong Zhang #endif 4859566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 4869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 4879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 4889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 489d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 4909566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&sell->colmap)); 491d4002b98SHong Zhang #else 4929566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 493d4002b98SHong Zhang #endif 4949566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 4959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 4969566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 4979566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 4989566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 4999566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 500d4002b98SHong Zhang 5019566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C",NULL)); 5059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISELLSetPreallocation_C",NULL)); 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisell_mpiaij_C",NULL)); 5079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 508d4002b98SHong Zhang PetscFunctionReturn(0); 509d4002b98SHong Zhang } 510d4002b98SHong Zhang 511d4002b98SHong Zhang #include <petscdraw.h> 512d4002b98SHong Zhang PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 513d4002b98SHong Zhang { 514d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 515d4002b98SHong Zhang PetscMPIInt rank=sell->rank,size=sell->size; 516d4002b98SHong Zhang PetscBool isdraw,iascii,isbinary; 517d4002b98SHong Zhang PetscViewer sviewer; 518d4002b98SHong Zhang PetscViewerFormat format; 519d4002b98SHong Zhang 520d4002b98SHong Zhang PetscFunctionBegin; 5219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 5239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 524d4002b98SHong Zhang if (iascii) { 5259566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 526d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 527d4002b98SHong Zhang MatInfo info; 5286335e310SSatish Balay PetscInt *inodes; 529d4002b98SHong Zhang 5309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 5319566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 5329566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,NULL,&inodes,NULL)); 5339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 534d4002b98SHong Zhang if (!inodes) { 535d0609cedSBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", 536d0609cedSBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 537d4002b98SHong Zhang } else { 538d0609cedSBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", 539d0609cedSBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 540d4002b98SHong Zhang } 5419566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A,MAT_LOCAL,&info)); 5429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5439566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B,MAT_LOCAL,&info)); 5449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5459566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 5489566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx,viewer)); 549d4002b98SHong Zhang PetscFunctionReturn(0); 550d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 551d4002b98SHong Zhang PetscInt inodecount,inodelimit,*inodes; 5529566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,&inodecount,&inodes,&inodelimit)); 553d4002b98SHong Zhang if (inodes) { 5549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n",inodecount,inodelimit)); 555d4002b98SHong Zhang } else { 5569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n")); 557d4002b98SHong Zhang } 558d4002b98SHong Zhang PetscFunctionReturn(0); 559d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 560d4002b98SHong Zhang PetscFunctionReturn(0); 561d4002b98SHong Zhang } 562d4002b98SHong Zhang } else if (isbinary) { 563d4002b98SHong Zhang if (size == 1) { 5649566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A,((PetscObject)mat)->name)); 5659566063dSJacob Faibussowitsch PetscCall(MatView(sell->A,viewer)); 566d4002b98SHong Zhang } else { 5679566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 568d4002b98SHong Zhang } 569d4002b98SHong Zhang PetscFunctionReturn(0); 570d4002b98SHong Zhang } else if (isdraw) { 571d4002b98SHong Zhang PetscDraw draw; 572d4002b98SHong Zhang PetscBool isnull; 5739566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 5749566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 575d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 576d4002b98SHong Zhang } 577d4002b98SHong Zhang 578d4002b98SHong Zhang { 579d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 580d4002b98SHong Zhang Mat A; 581d4002b98SHong Zhang Mat_SeqSELL *Aloc; 582d4002b98SHong Zhang PetscInt M=mat->rmap->N,N=mat->cmap->N,*acolidx,row,col,i,j; 583d4002b98SHong Zhang MatScalar *aval; 584d4002b98SHong Zhang PetscBool isnonzero; 585d4002b98SHong Zhang 5869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 587dd400576SPatrick Sanan if (rank == 0) { 5889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 589d4002b98SHong Zhang } else { 5909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 591d4002b98SHong Zhang } 592d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 5939566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPISELL)); 5949566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,0,NULL,0,NULL)); 5959566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 5969566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 597d4002b98SHong Zhang 598d4002b98SHong Zhang /* copy over the A part */ 599d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->A->data; 600d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 601d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { /* loop over slices */ 602d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 603d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 604d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 605d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; /* i<<3 is the starting row of this slice */ 606d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6079566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 608d4002b98SHong Zhang } 609d4002b98SHong Zhang aval++; acolidx++; 610d4002b98SHong Zhang } 611d4002b98SHong Zhang } 612d4002b98SHong Zhang 613d4002b98SHong Zhang /* copy over the B part */ 614d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->B->data; 615d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 616d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { 617d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 618d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 619d4002b98SHong Zhang if (isnonzero) { 620d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; 621d4002b98SHong Zhang col = sell->garray[*acolidx]; 6229566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 623d4002b98SHong Zhang } 624d4002b98SHong Zhang aval++; acolidx++; 625d4002b98SHong Zhang } 626d4002b98SHong Zhang } 627d4002b98SHong Zhang 6289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 630d4002b98SHong Zhang /* 631d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 632d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 633d4002b98SHong Zhang */ 6349566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 635dd400576SPatrick Sanan if (rank == 0) { 6369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL*)(A->data))->A,((PetscObject)mat)->name)); 6379566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL(((Mat_MPISELL*)(A->data))->A,sviewer)); 638d4002b98SHong Zhang } 6399566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6409566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 642d4002b98SHong Zhang } 643d4002b98SHong Zhang PetscFunctionReturn(0); 644d4002b98SHong Zhang } 645d4002b98SHong Zhang 646d4002b98SHong Zhang PetscErrorCode MatView_MPISELL(Mat mat,PetscViewer viewer) 647d4002b98SHong Zhang { 648d4002b98SHong Zhang PetscBool iascii,isdraw,issocket,isbinary; 649d4002b98SHong Zhang 650d4002b98SHong Zhang PetscFunctionBegin; 6519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 655d4002b98SHong Zhang if (iascii || isdraw || isbinary || issocket) { 6569566063dSJacob Faibussowitsch PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat,viewer)); 657d4002b98SHong Zhang } 658d4002b98SHong Zhang PetscFunctionReturn(0); 659d4002b98SHong Zhang } 660d4002b98SHong Zhang 661d4002b98SHong Zhang PetscErrorCode MatGetGhosts_MPISELL(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 662d4002b98SHong Zhang { 663d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 664d4002b98SHong Zhang 665d4002b98SHong Zhang PetscFunctionBegin; 6669566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B,NULL,nghosts)); 667d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 668d4002b98SHong Zhang PetscFunctionReturn(0); 669d4002b98SHong Zhang } 670d4002b98SHong Zhang 671d4002b98SHong Zhang PetscErrorCode MatGetInfo_MPISELL(Mat matin,MatInfoType flag,MatInfo *info) 672d4002b98SHong Zhang { 673d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 674d4002b98SHong Zhang Mat A=mat->A,B=mat->B; 6753966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 676d4002b98SHong Zhang 677d4002b98SHong Zhang PetscFunctionBegin; 678d4002b98SHong Zhang info->block_size = 1.0; 6799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 680d4002b98SHong Zhang 681d4002b98SHong Zhang isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 682d4002b98SHong Zhang isend[3] = info->memory; isend[4] = info->mallocs; 683d4002b98SHong Zhang 6849566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 685d4002b98SHong Zhang 686d4002b98SHong Zhang isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 687d4002b98SHong Zhang isend[3] += info->memory; isend[4] += info->mallocs; 688d4002b98SHong Zhang if (flag == MAT_LOCAL) { 689d4002b98SHong Zhang info->nz_used = isend[0]; 690d4002b98SHong Zhang info->nz_allocated = isend[1]; 691d4002b98SHong Zhang info->nz_unneeded = isend[2]; 692d4002b98SHong Zhang info->memory = isend[3]; 693d4002b98SHong Zhang info->mallocs = isend[4]; 694d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 6951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 696d4002b98SHong Zhang 697d4002b98SHong Zhang info->nz_used = irecv[0]; 698d4002b98SHong Zhang info->nz_allocated = irecv[1]; 699d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 700d4002b98SHong Zhang info->memory = irecv[3]; 701d4002b98SHong Zhang info->mallocs = irecv[4]; 702d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 704d4002b98SHong Zhang 705d4002b98SHong Zhang info->nz_used = irecv[0]; 706d4002b98SHong Zhang info->nz_allocated = irecv[1]; 707d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 708d4002b98SHong Zhang info->memory = irecv[3]; 709d4002b98SHong Zhang info->mallocs = irecv[4]; 710d4002b98SHong Zhang } 711d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 712d4002b98SHong Zhang info->fill_ratio_needed = 0; 713d4002b98SHong Zhang info->factor_mallocs = 0; 714d4002b98SHong Zhang PetscFunctionReturn(0); 715d4002b98SHong Zhang } 716d4002b98SHong Zhang 717d4002b98SHong Zhang PetscErrorCode MatSetOption_MPISELL(Mat A,MatOption op,PetscBool flg) 718d4002b98SHong Zhang { 719d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 720d4002b98SHong Zhang 721d4002b98SHong Zhang PetscFunctionBegin; 722d4002b98SHong Zhang switch (op) { 723d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 724d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 725d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 726d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 727d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 728d4002b98SHong Zhang case MAT_USE_INODES: 729d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 730d4002b98SHong Zhang MatCheckPreallocated(A,1); 7319566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7329566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 733d4002b98SHong Zhang break; 734d4002b98SHong Zhang case MAT_ROW_ORIENTED: 735d4002b98SHong Zhang MatCheckPreallocated(A,1); 736d4002b98SHong Zhang a->roworiented = flg; 737d4002b98SHong Zhang 7389566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7399566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 740d4002b98SHong Zhang break; 7418c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 742071fcb05SBarry Smith case MAT_SORTED_FULL: 7439566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 744d4002b98SHong Zhang break; 745d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 746d4002b98SHong Zhang a->donotstash = flg; 747d4002b98SHong Zhang break; 748d4002b98SHong Zhang case MAT_SPD: 749*b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 750d4002b98SHong Zhang break; 751d4002b98SHong Zhang case MAT_SYMMETRIC: 752d4002b98SHong Zhang MatCheckPreallocated(A,1); 7539566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 754d4002b98SHong Zhang break; 755d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 756d4002b98SHong Zhang MatCheckPreallocated(A,1); 7579566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 758d4002b98SHong Zhang break; 759d4002b98SHong Zhang case MAT_HERMITIAN: 760d4002b98SHong Zhang MatCheckPreallocated(A,1); 7619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 762d4002b98SHong Zhang break; 763d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 764d4002b98SHong Zhang MatCheckPreallocated(A,1); 7659566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 766d4002b98SHong Zhang break; 767*b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 768*b94d7dedSBarry Smith MatCheckPreallocated(A,1); 769*b94d7dedSBarry Smith PetscCall(MatSetOption(a->A,op,flg)); 770*b94d7dedSBarry Smith break; 771d4002b98SHong Zhang default: 77298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 773d4002b98SHong Zhang } 774d4002b98SHong Zhang PetscFunctionReturn(0); 775d4002b98SHong Zhang } 776d4002b98SHong Zhang 777d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_MPISELL(Mat mat,Vec ll,Vec rr) 778d4002b98SHong Zhang { 779d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 780d4002b98SHong Zhang Mat a=sell->A,b=sell->B; 781d4002b98SHong Zhang PetscInt s1,s2,s3; 782d4002b98SHong Zhang 783d4002b98SHong Zhang PetscFunctionBegin; 7849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 785d4002b98SHong Zhang if (rr) { 7869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 78708401ef6SPierre Jolivet PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 788d4002b98SHong Zhang /* Overlap communication with computation. */ 7899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 790d4002b98SHong Zhang } 791d4002b98SHong Zhang if (ll) { 7929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 79308401ef6SPierre Jolivet PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 7949566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 795d4002b98SHong Zhang } 796d4002b98SHong Zhang /* scale the diagonal block */ 7979566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 798d4002b98SHong Zhang 799d4002b98SHong Zhang if (rr) { 800d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 8029566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,sell->lvec)); 803d4002b98SHong Zhang } 804d4002b98SHong Zhang PetscFunctionReturn(0); 805d4002b98SHong Zhang } 806d4002b98SHong Zhang 807d4002b98SHong Zhang PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 808d4002b98SHong Zhang { 809d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 810d4002b98SHong Zhang 811d4002b98SHong Zhang PetscFunctionBegin; 8129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 813d4002b98SHong Zhang PetscFunctionReturn(0); 814d4002b98SHong Zhang } 815d4002b98SHong Zhang 816d4002b98SHong Zhang PetscErrorCode MatEqual_MPISELL(Mat A,Mat B,PetscBool *flag) 817d4002b98SHong Zhang { 818d4002b98SHong Zhang Mat_MPISELL *matB=(Mat_MPISELL*)B->data,*matA=(Mat_MPISELL*)A->data; 819d4002b98SHong Zhang Mat a,b,c,d; 820d4002b98SHong Zhang PetscBool flg; 821d4002b98SHong Zhang 822d4002b98SHong Zhang PetscFunctionBegin; 823d4002b98SHong Zhang a = matA->A; b = matA->B; 824d4002b98SHong Zhang c = matB->A; d = matB->B; 825d4002b98SHong Zhang 8269566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 827d4002b98SHong Zhang if (flg) { 8289566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 829d4002b98SHong Zhang } 8301c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 831d4002b98SHong Zhang PetscFunctionReturn(0); 832d4002b98SHong Zhang } 833d4002b98SHong Zhang 834d4002b98SHong Zhang PetscErrorCode MatCopy_MPISELL(Mat A,Mat B,MatStructure str) 835d4002b98SHong Zhang { 836d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 837d4002b98SHong Zhang Mat_MPISELL *b=(Mat_MPISELL*)B->data; 838d4002b98SHong Zhang 839d4002b98SHong Zhang PetscFunctionBegin; 840d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 841d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 842d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 843d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 844d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 845d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 846d4002b98SHong Zhang then copying the submatrices */ 8479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 848d4002b98SHong Zhang } else { 8499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 8509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 851d4002b98SHong Zhang } 852d4002b98SHong Zhang PetscFunctionReturn(0); 853d4002b98SHong Zhang } 854d4002b98SHong Zhang 855d4002b98SHong Zhang PetscErrorCode MatSetUp_MPISELL(Mat A) 856d4002b98SHong Zhang { 857d4002b98SHong Zhang PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 859d4002b98SHong Zhang PetscFunctionReturn(0); 860d4002b98SHong Zhang } 861d4002b98SHong Zhang 862d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat); 863d4002b98SHong Zhang 864d4002b98SHong Zhang PetscErrorCode MatConjugate_MPISELL(Mat mat) 865d4002b98SHong Zhang { 8665f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8675f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 868d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 869d4002b98SHong Zhang 8709566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8719566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8725f80ce2aSJacob Faibussowitsch } 873d4002b98SHong Zhang PetscFunctionReturn(0); 874d4002b98SHong Zhang } 875d4002b98SHong Zhang 876d4002b98SHong Zhang PetscErrorCode MatRealPart_MPISELL(Mat A) 877d4002b98SHong Zhang { 878d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 879d4002b98SHong Zhang 880d4002b98SHong Zhang PetscFunctionBegin; 8819566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 8829566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 883d4002b98SHong Zhang PetscFunctionReturn(0); 884d4002b98SHong Zhang } 885d4002b98SHong Zhang 886d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 887d4002b98SHong Zhang { 888d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 889d4002b98SHong Zhang 890d4002b98SHong Zhang PetscFunctionBegin; 8919566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 8929566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 893d4002b98SHong Zhang PetscFunctionReturn(0); 894d4002b98SHong Zhang } 895d4002b98SHong Zhang 896d4002b98SHong Zhang PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A,const PetscScalar **values) 897d4002b98SHong Zhang { 898d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 899d4002b98SHong Zhang 900d4002b98SHong Zhang PetscFunctionBegin; 9019566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 902d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 903d4002b98SHong Zhang PetscFunctionReturn(0); 904d4002b98SHong Zhang } 905d4002b98SHong Zhang 906d4002b98SHong Zhang static PetscErrorCode MatSetRandom_MPISELL(Mat x,PetscRandom rctx) 907d4002b98SHong Zhang { 908d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)x->data; 909d4002b98SHong Zhang 910d4002b98SHong Zhang PetscFunctionBegin; 9119566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A,rctx)); 9129566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B,rctx)); 9139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x,MAT_FINAL_ASSEMBLY)); 9149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x,MAT_FINAL_ASSEMBLY)); 915d4002b98SHong Zhang PetscFunctionReturn(0); 916d4002b98SHong Zhang } 917d4002b98SHong Zhang 918d4002b98SHong Zhang PetscErrorCode MatSetFromOptions_MPISELL(PetscOptionItems *PetscOptionsObject,Mat A) 919d4002b98SHong Zhang { 920d4002b98SHong Zhang PetscFunctionBegin; 921d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject,"MPISELL options"); 922d0609cedSBarry Smith PetscOptionsHeadEnd(); 923d4002b98SHong Zhang PetscFunctionReturn(0); 924d4002b98SHong Zhang } 925d4002b98SHong Zhang 926d4002b98SHong Zhang PetscErrorCode MatShift_MPISELL(Mat Y,PetscScalar a) 927d4002b98SHong Zhang { 928d4002b98SHong Zhang Mat_MPISELL *msell=(Mat_MPISELL*)Y->data; 929d4002b98SHong Zhang Mat_SeqSELL *sell=(Mat_SeqSELL*)msell->A->data; 930d4002b98SHong Zhang 931d4002b98SHong Zhang PetscFunctionBegin; 932d4002b98SHong Zhang if (!Y->preallocated) { 9339566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y,1,NULL,0,NULL)); 934d4002b98SHong Zhang } else if (!sell->nz) { 935d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9369566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A,1,NULL)); 937d4002b98SHong Zhang sell->nonew = nonew; 938d4002b98SHong Zhang } 9399566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 940d4002b98SHong Zhang PetscFunctionReturn(0); 941d4002b98SHong Zhang } 942d4002b98SHong Zhang 943d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_MPISELL(Mat A,PetscBool *missing,PetscInt *d) 944d4002b98SHong Zhang { 945d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 946d4002b98SHong Zhang 947d4002b98SHong Zhang PetscFunctionBegin; 94808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 9499566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 950d4002b98SHong Zhang if (d) { 951d4002b98SHong Zhang PetscInt rstart; 9529566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 953d4002b98SHong Zhang *d += rstart; 954d4002b98SHong Zhang 955d4002b98SHong Zhang } 956d4002b98SHong Zhang PetscFunctionReturn(0); 957d4002b98SHong Zhang } 958d4002b98SHong Zhang 959d4002b98SHong Zhang PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A,Mat *a) 960d4002b98SHong Zhang { 961d4002b98SHong Zhang PetscFunctionBegin; 962d4002b98SHong Zhang *a = ((Mat_MPISELL*)A->data)->A; 963d4002b98SHong Zhang PetscFunctionReturn(0); 964d4002b98SHong Zhang } 965d4002b98SHong Zhang 966d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 967d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 968f4259b30SLisandro Dalcin NULL, 969f4259b30SLisandro Dalcin NULL, 970d4002b98SHong Zhang MatMult_MPISELL, 971d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 972d4002b98SHong Zhang MatMultTranspose_MPISELL, 973d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 974f4259b30SLisandro Dalcin NULL, 975f4259b30SLisandro Dalcin NULL, 976f4259b30SLisandro Dalcin NULL, 977f4259b30SLisandro Dalcin /*10*/ NULL, 978f4259b30SLisandro Dalcin NULL, 979f4259b30SLisandro Dalcin NULL, 980d4002b98SHong Zhang MatSOR_MPISELL, 981f4259b30SLisandro Dalcin NULL, 982d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 983d4002b98SHong Zhang MatEqual_MPISELL, 984d4002b98SHong Zhang MatGetDiagonal_MPISELL, 985d4002b98SHong Zhang MatDiagonalScale_MPISELL, 986f4259b30SLisandro Dalcin NULL, 987d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 988d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 989d4002b98SHong Zhang MatSetOption_MPISELL, 990d4002b98SHong Zhang MatZeroEntries_MPISELL, 991f4259b30SLisandro Dalcin /*24*/ NULL, 992f4259b30SLisandro Dalcin NULL, 993f4259b30SLisandro Dalcin NULL, 994f4259b30SLisandro Dalcin NULL, 995f4259b30SLisandro Dalcin NULL, 996d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 997f4259b30SLisandro Dalcin NULL, 998f4259b30SLisandro Dalcin NULL, 999d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1000f4259b30SLisandro Dalcin NULL, 1001d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1002f4259b30SLisandro Dalcin NULL, 1003f4259b30SLisandro Dalcin NULL, 1004f4259b30SLisandro Dalcin NULL, 1005f4259b30SLisandro Dalcin NULL, 1006f4259b30SLisandro Dalcin /*39*/ NULL, 1007f4259b30SLisandro Dalcin NULL, 1008f4259b30SLisandro Dalcin NULL, 1009d4002b98SHong Zhang MatGetValues_MPISELL, 1010d4002b98SHong Zhang MatCopy_MPISELL, 1011f4259b30SLisandro Dalcin /*44*/ NULL, 1012d4002b98SHong Zhang MatScale_MPISELL, 1013d4002b98SHong Zhang MatShift_MPISELL, 1014d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1015f4259b30SLisandro Dalcin NULL, 1016d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1017f4259b30SLisandro Dalcin NULL, 1018f4259b30SLisandro Dalcin NULL, 1019f4259b30SLisandro Dalcin NULL, 1020f4259b30SLisandro Dalcin NULL, 1021d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1022f4259b30SLisandro Dalcin NULL, 1023d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1024f4259b30SLisandro Dalcin NULL, 1025f4259b30SLisandro Dalcin NULL, 1026f4259b30SLisandro Dalcin /*59*/ NULL, 1027d4002b98SHong Zhang MatDestroy_MPISELL, 1028d4002b98SHong Zhang MatView_MPISELL, 1029f4259b30SLisandro Dalcin NULL, 1030f4259b30SLisandro Dalcin NULL, 1031f4259b30SLisandro Dalcin /*64*/ NULL, 1032f4259b30SLisandro Dalcin NULL, 1033f4259b30SLisandro Dalcin NULL, 1034f4259b30SLisandro Dalcin NULL, 1035f4259b30SLisandro Dalcin NULL, 1036f4259b30SLisandro Dalcin /*69*/ NULL, 1037f4259b30SLisandro Dalcin NULL, 1038f4259b30SLisandro Dalcin NULL, 1039f4259b30SLisandro Dalcin NULL, 1040f4259b30SLisandro Dalcin NULL, 1041f4259b30SLisandro Dalcin NULL, 1042d4002b98SHong Zhang /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */ 1043d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1044f4259b30SLisandro Dalcin NULL, 1045f4259b30SLisandro Dalcin NULL, 1046f4259b30SLisandro Dalcin NULL, 1047f4259b30SLisandro Dalcin /*80*/ NULL, 1048f4259b30SLisandro Dalcin NULL, 1049f4259b30SLisandro Dalcin NULL, 1050f4259b30SLisandro Dalcin /*83*/ NULL, 1051f4259b30SLisandro Dalcin NULL, 1052f4259b30SLisandro Dalcin NULL, 1053f4259b30SLisandro Dalcin NULL, 1054f4259b30SLisandro Dalcin NULL, 1055f4259b30SLisandro Dalcin NULL, 1056f4259b30SLisandro Dalcin /*89*/ NULL, 1057f4259b30SLisandro Dalcin NULL, 1058f4259b30SLisandro Dalcin NULL, 1059f4259b30SLisandro Dalcin NULL, 1060f4259b30SLisandro Dalcin NULL, 1061f4259b30SLisandro Dalcin /*94*/ NULL, 1062f4259b30SLisandro Dalcin NULL, 1063f4259b30SLisandro Dalcin NULL, 1064f4259b30SLisandro Dalcin NULL, 1065f4259b30SLisandro Dalcin NULL, 1066f4259b30SLisandro Dalcin /*99*/ NULL, 1067f4259b30SLisandro Dalcin NULL, 1068f4259b30SLisandro Dalcin NULL, 1069d4002b98SHong Zhang MatConjugate_MPISELL, 1070f4259b30SLisandro Dalcin NULL, 1071f4259b30SLisandro Dalcin /*104*/NULL, 1072d4002b98SHong Zhang MatRealPart_MPISELL, 1073d4002b98SHong Zhang MatImaginaryPart_MPISELL, 1074f4259b30SLisandro Dalcin NULL, 1075f4259b30SLisandro Dalcin NULL, 1076f4259b30SLisandro Dalcin /*109*/NULL, 1077f4259b30SLisandro Dalcin NULL, 1078f4259b30SLisandro Dalcin NULL, 1079f4259b30SLisandro Dalcin NULL, 1080d4002b98SHong Zhang MatMissingDiagonal_MPISELL, 1081f4259b30SLisandro Dalcin /*114*/NULL, 1082f4259b30SLisandro Dalcin NULL, 1083d4002b98SHong Zhang MatGetGhosts_MPISELL, 1084f4259b30SLisandro Dalcin NULL, 1085f4259b30SLisandro Dalcin NULL, 1086f4259b30SLisandro Dalcin /*119*/NULL, 1087f4259b30SLisandro Dalcin NULL, 1088f4259b30SLisandro Dalcin NULL, 1089f4259b30SLisandro Dalcin NULL, 1090f4259b30SLisandro Dalcin NULL, 1091f4259b30SLisandro Dalcin /*124*/NULL, 1092f4259b30SLisandro Dalcin NULL, 1093d4002b98SHong Zhang MatInvertBlockDiagonal_MPISELL, 1094f4259b30SLisandro Dalcin NULL, 1095f4259b30SLisandro Dalcin NULL, 1096f4259b30SLisandro Dalcin /*129*/NULL, 1097f4259b30SLisandro Dalcin NULL, 1098f4259b30SLisandro Dalcin NULL, 1099f4259b30SLisandro Dalcin NULL, 1100f4259b30SLisandro Dalcin NULL, 1101f4259b30SLisandro Dalcin /*134*/NULL, 1102f4259b30SLisandro Dalcin NULL, 1103f4259b30SLisandro Dalcin NULL, 1104f4259b30SLisandro Dalcin NULL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin /*139*/NULL, 1107f4259b30SLisandro Dalcin NULL, 1108f4259b30SLisandro Dalcin NULL, 1109d4002b98SHong Zhang MatFDColoringSetUp_MPIXAIJ, 1110f4259b30SLisandro Dalcin NULL, 1111d70f29a3SPierre Jolivet /*144*/NULL, 1112d70f29a3SPierre Jolivet NULL, 1113d70f29a3SPierre Jolivet NULL, 111499a7f59eSMark Adams NULL, 111599a7f59eSMark Adams NULL, 1116d70f29a3SPierre Jolivet NULL 1117d4002b98SHong Zhang }; 1118d4002b98SHong Zhang 1119d4002b98SHong Zhang /* ----------------------------------------------------------------------------------------*/ 1120d4002b98SHong Zhang 1121d4002b98SHong Zhang PetscErrorCode MatStoreValues_MPISELL(Mat mat) 1122d4002b98SHong Zhang { 1123d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1124d4002b98SHong Zhang 1125d4002b98SHong Zhang PetscFunctionBegin; 11269566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 11279566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 1128d4002b98SHong Zhang PetscFunctionReturn(0); 1129d4002b98SHong Zhang } 1130d4002b98SHong Zhang 1131d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 1132d4002b98SHong Zhang { 1133d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1134d4002b98SHong Zhang 1135d4002b98SHong Zhang PetscFunctionBegin; 11369566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 11379566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 1138d4002b98SHong Zhang PetscFunctionReturn(0); 1139d4002b98SHong Zhang } 1140d4002b98SHong Zhang 1141d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[]) 1142d4002b98SHong Zhang { 1143d4002b98SHong Zhang Mat_MPISELL *b; 1144d4002b98SHong Zhang 1145d4002b98SHong Zhang PetscFunctionBegin; 11469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 11479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1148d4002b98SHong Zhang b = (Mat_MPISELL*)B->data; 1149d4002b98SHong Zhang 1150d4002b98SHong Zhang if (!B->preallocated) { 1151d4002b98SHong Zhang /* Explicitly create 2 MATSEQSELL matrices. */ 11529566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 11539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 11549566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A,B,B)); 11559566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQSELL)); 11569566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 11579566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 11589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N)); 11599566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B,B,B)); 11609566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQSELL)); 11619566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 1162d4002b98SHong Zhang } 1163d4002b98SHong Zhang 11649566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A,d_rlenmax,d_rlen)); 11659566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B,o_rlenmax,o_rlen)); 1166d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 1167d4002b98SHong Zhang B->was_assembled = PETSC_FALSE; 1168d4002b98SHong Zhang /* 1169d4002b98SHong Zhang critical for MatAssemblyEnd to work. 1170d4002b98SHong Zhang MatAssemblyBegin checks it to set up was_assembled 1171d4002b98SHong Zhang and MatAssemblyEnd checks was_assembled to determine whether to build garray 1172d4002b98SHong Zhang */ 1173d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1174d4002b98SHong Zhang PetscFunctionReturn(0); 1175d4002b98SHong Zhang } 1176d4002b98SHong Zhang 1177d4002b98SHong Zhang PetscErrorCode MatDuplicate_MPISELL(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1178d4002b98SHong Zhang { 1179d4002b98SHong Zhang Mat mat; 1180d4002b98SHong Zhang Mat_MPISELL *a,*oldmat=(Mat_MPISELL*)matin->data; 1181d4002b98SHong Zhang 1182d4002b98SHong Zhang PetscFunctionBegin; 1183f4259b30SLisandro Dalcin *newmat = NULL; 11849566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 11859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 11869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat,matin,matin)); 11879566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 1188d4002b98SHong Zhang a = (Mat_MPISELL*)mat->data; 1189d4002b98SHong Zhang 1190d4002b98SHong Zhang mat->factortype = matin->factortype; 1191d4002b98SHong Zhang mat->assembled = PETSC_TRUE; 1192d4002b98SHong Zhang mat->insertmode = NOT_SET_VALUES; 1193d4002b98SHong Zhang mat->preallocated = PETSC_TRUE; 1194d4002b98SHong Zhang 1195d4002b98SHong Zhang a->size = oldmat->size; 1196d4002b98SHong Zhang a->rank = oldmat->rank; 1197d4002b98SHong Zhang a->donotstash = oldmat->donotstash; 1198d4002b98SHong Zhang a->roworiented = oldmat->roworiented; 1199f4259b30SLisandro Dalcin a->rowindices = NULL; 1200f4259b30SLisandro Dalcin a->rowvalues = NULL; 1201d4002b98SHong Zhang a->getrowactive = PETSC_FALSE; 1202d4002b98SHong Zhang 12039566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 12049566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 1205d4002b98SHong Zhang 1206d4002b98SHong Zhang if (oldmat->colmap) { 1207d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 12089566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 1209d4002b98SHong Zhang #else 12109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&a->colmap)); 12119566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N)*sizeof(PetscInt))); 12129566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,mat->cmap->N)); 1213d4002b98SHong Zhang #endif 1214f4259b30SLisandro Dalcin } else a->colmap = NULL; 1215d4002b98SHong Zhang if (oldmat->garray) { 1216d4002b98SHong Zhang PetscInt len; 1217d4002b98SHong Zhang len = oldmat->B->cmap->n; 12189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len+1,&a->garray)); 12199566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 12209566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 1221f4259b30SLisandro Dalcin } else a->garray = NULL; 1222d4002b98SHong Zhang 12239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 12249566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 12259566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 12269566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 12279566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 12289566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 12299566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 12309566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 12319566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 1232d4002b98SHong Zhang *newmat = mat; 1233d4002b98SHong Zhang PetscFunctionReturn(0); 1234d4002b98SHong Zhang } 1235d4002b98SHong Zhang 1236d4002b98SHong Zhang /*@C 1237d4002b98SHong Zhang MatMPISELLSetPreallocation - Preallocates memory for a sparse parallel matrix in sell format. 1238d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 1239d4002b98SHong Zhang setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz). 1240d4002b98SHong Zhang 1241d083f849SBarry Smith Collective 1242d4002b98SHong Zhang 1243d4002b98SHong Zhang Input Parameters: 1244d4002b98SHong Zhang + B - the matrix 1245d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1246d4002b98SHong Zhang (same value is used for all local rows) 1247d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1248d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1249d4002b98SHong Zhang or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure. 1250d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1251d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1252d4002b98SHong Zhang the diagonal entry even if it is zero. 1253d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1254d4002b98SHong Zhang submatrix (same value is used for all local rows). 1255d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1256d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1257d4002b98SHong Zhang each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero 1258d4002b98SHong Zhang structure. The size of this array is equal to the number 1259d4002b98SHong Zhang of local rows, i.e 'm'. 1260d4002b98SHong Zhang 1261d4002b98SHong Zhang If the *_nnz parameter is given then the *_nz parameter is ignored 1262d4002b98SHong Zhang 1263d4002b98SHong Zhang The stored row and column indices begin with zero. 1264d4002b98SHong Zhang 1265d4002b98SHong Zhang The parallel matrix is partitioned such that the first m0 rows belong to 1266d4002b98SHong Zhang process 0, the next m1 rows belong to process 1, the next m2 rows belong 1267d4002b98SHong Zhang to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 1268d4002b98SHong Zhang 1269d4002b98SHong Zhang The DIAGONAL portion of the local submatrix of a processor can be defined 1270d4002b98SHong Zhang as the submatrix which is obtained by extraction the part corresponding to 1271d4002b98SHong Zhang the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 1272d4002b98SHong Zhang first row that belongs to the processor, r2 is the last row belonging to 1273d4002b98SHong Zhang the this processor, and c1-c2 is range of indices of the local part of a 1274d4002b98SHong Zhang vector suitable for applying the matrix to. This is an mxn matrix. In the 1275d4002b98SHong Zhang common case of a square matrix, the row and column ranges are the same and 1276d4002b98SHong Zhang the DIAGONAL part is also square. The remaining portion of the local 1277d4002b98SHong Zhang submatrix (mxN) constitute the OFF-DIAGONAL portion. 1278d4002b98SHong Zhang 1279d4002b98SHong Zhang If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored. 1280d4002b98SHong Zhang 1281d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 1282d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1283d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 1284d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 1285d4002b98SHong Zhang 1286d4002b98SHong Zhang Example usage: 1287d4002b98SHong Zhang 1288d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1289d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1290d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1291d4002b98SHong Zhang as follows: 1292d4002b98SHong Zhang 1293d4002b98SHong Zhang .vb 1294d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1295d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1296d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1297d4002b98SHong Zhang ------------------------------------- 1298d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1299d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1300d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1301d4002b98SHong Zhang ------------------------------------- 1302d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1303d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1304d4002b98SHong Zhang .ve 1305d4002b98SHong Zhang 1306d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1307d4002b98SHong Zhang 1308d4002b98SHong Zhang .vb 1309d4002b98SHong Zhang A B C 1310d4002b98SHong Zhang D E F 1311d4002b98SHong Zhang G H I 1312d4002b98SHong Zhang .ve 1313d4002b98SHong Zhang 1314d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1315d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1316d4002b98SHong Zhang 1317d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1318d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1319d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1320d4002b98SHong Zhang 1321d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1322d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1323d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1324d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1325d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1326d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1327d4002b98SHong Zhang 1328d4002b98SHong Zhang When d_nz, o_nz parameters are specified, d_nz storage elements are 1329d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_nz 1330d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1331d4002b98SHong Zhang One way to choose d_nz and o_nz is to use the max nonzerors per local 1332d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1333d4002b98SHong Zhang In this case, the values of d_nz,o_nz are: 1334d4002b98SHong Zhang .vb 1335d4002b98SHong Zhang proc0 : dnz = 2, o_nz = 2 1336d4002b98SHong Zhang proc1 : dnz = 3, o_nz = 2 1337d4002b98SHong Zhang proc2 : dnz = 1, o_nz = 4 1338d4002b98SHong Zhang .ve 1339d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1340d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1341d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1342d4002b98SHong Zhang 34 values. 1343d4002b98SHong Zhang 1344d4002b98SHong Zhang When d_nnz, o_nnz parameters are specified, the storage is specified 1345a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1346d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1347d4002b98SHong Zhang .vb 1348d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1349d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1350d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1351d4002b98SHong Zhang .ve 1352d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1353d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1354d4002b98SHong Zhang 1355d4002b98SHong Zhang Level: intermediate 1356d4002b98SHong Zhang 1357db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`, 1358db781477SPatrick Sanan `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()` 1359d4002b98SHong Zhang @*/ 1360d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1361d4002b98SHong Zhang { 1362d4002b98SHong Zhang PetscFunctionBegin; 1363d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1364d4002b98SHong Zhang PetscValidType(B,1); 1365cac4c232SBarry Smith PetscTryMethod(B,"MatMPISELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,d_nz,d_nnz,o_nz,o_nnz)); 1366d4002b98SHong Zhang PetscFunctionReturn(0); 1367d4002b98SHong Zhang } 1368d4002b98SHong Zhang 1369ed73aabaSBarry Smith /*MC 1370ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1371ed73aabaSBarry Smith based on the sliced Ellpack format 1372ed73aabaSBarry Smith 1373ed73aabaSBarry Smith Options Database Keys: 1374ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 1375ed73aabaSBarry Smith 1376ed73aabaSBarry Smith Level: beginner 1377ed73aabaSBarry Smith 1378db781477SPatrick Sanan .seealso: `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 1379ed73aabaSBarry Smith M*/ 1380ed73aabaSBarry Smith 1381d4002b98SHong Zhang /*@C 1382d4002b98SHong Zhang MatCreateSELL - Creates a sparse parallel matrix in SELL format. 1383d4002b98SHong Zhang 1384d083f849SBarry Smith Collective 1385d4002b98SHong Zhang 1386d4002b98SHong Zhang Input Parameters: 1387d4002b98SHong Zhang + comm - MPI communicator 1388d4002b98SHong Zhang . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1389d4002b98SHong Zhang This value should be the same as the local size used in creating the 1390d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1391d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 1392d4002b98SHong Zhang x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 1393d4002b98SHong Zhang calculated if N is given) For square matrices n is almost always m. 1394d4002b98SHong Zhang . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1395d4002b98SHong Zhang . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1396d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1397d4002b98SHong Zhang (same value is used for all local rows) 1398d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1399d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1400d4002b98SHong Zhang or NULL, if d_rlenmax is used to specify the nonzero structure. 1401d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1402d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1403d4002b98SHong Zhang submatrix (same value is used for all local rows). 1404d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1405d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1406d4002b98SHong Zhang each row) or NULL, if o_rlenmax is used to specify the nonzero 1407d4002b98SHong Zhang structure. The size of this array is equal to the number 1408d4002b98SHong Zhang of local rows, i.e 'm'. 1409d4002b98SHong Zhang 1410d4002b98SHong Zhang Output Parameter: 1411d4002b98SHong Zhang . A - the matrix 1412d4002b98SHong Zhang 1413d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1414f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 1415d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 1416d4002b98SHong Zhang 1417d4002b98SHong Zhang Notes: 1418d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1419d4002b98SHong Zhang 1420d4002b98SHong Zhang m,n,M,N parameters specify the size of the matrix, and its partitioning across 1421d4002b98SHong Zhang processors, while d_rlenmax,d_rlen,o_rlenmax,o_rlen parameters specify the approximate 1422d4002b98SHong Zhang storage requirements for this matrix. 1423d4002b98SHong Zhang 1424d4002b98SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one 1425d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1426d4002b98SHong Zhang that argument. 1427d4002b98SHong Zhang 1428d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1429d4002b98SHong Zhang (possibly both). 1430d4002b98SHong Zhang 1431d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1432d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1433d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1434d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 1435d4002b98SHong Zhang values corresponding to [m x N] submatrix. 1436d4002b98SHong Zhang 1437d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1438d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 1439d4002b98SHong Zhang partition etc.. where n0,n1,n2... are the input parameter 'n'. 1440d4002b98SHong Zhang 1441d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 1442d4002b98SHong Zhang is the submatrix corresponding to the rows and columns m,n 1443d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1444d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1445d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1446d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1447d4002b98SHong Zhang illustrates this concept. 1448d4002b98SHong Zhang 1449d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1450d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1451d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1452d4002b98SHong Zhang local matrix (a rectangular submatrix). 1453d4002b98SHong Zhang 1454d4002b98SHong Zhang If o_rlen, d_rlen are specified, then o_rlenmax, and d_rlenmax are ignored. 1455d4002b98SHong Zhang 1456d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 1457d4002b98SHong Zhang type SEQSELL is returned. If a matrix of type MATMPISELL is desired for this 1458d4002b98SHong Zhang type of communicator, use the construction mechanism: 1459d4002b98SHong Zhang MatCreate(...,&A); MatSetType(A,MATMPISELL); MatSetSizes(A, m,n,M,N); MatMPISELLSetPreallocation(A,...); 1460d4002b98SHong Zhang 1461d4002b98SHong Zhang Options Database Keys: 1462d4002b98SHong Zhang - -mat_sell_oneindex - Internally use indexing starting at 1 1463d4002b98SHong Zhang rather than 0. Note that when calling MatSetValues(), 1464d4002b98SHong Zhang the user still MUST index entries starting at 0! 1465d4002b98SHong Zhang 1466d4002b98SHong Zhang Example usage: 1467d4002b98SHong Zhang 1468d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1469d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1470d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1471d4002b98SHong Zhang as follows: 1472d4002b98SHong Zhang 1473d4002b98SHong Zhang .vb 1474d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1475d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1476d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1477d4002b98SHong Zhang ------------------------------------- 1478d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1479d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1480d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1481d4002b98SHong Zhang ------------------------------------- 1482d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1483d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1484d4002b98SHong Zhang .ve 1485d4002b98SHong Zhang 1486d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1487d4002b98SHong Zhang 1488d4002b98SHong Zhang .vb 1489d4002b98SHong Zhang A B C 1490d4002b98SHong Zhang D E F 1491d4002b98SHong Zhang G H I 1492d4002b98SHong Zhang .ve 1493d4002b98SHong Zhang 1494d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1495d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1496d4002b98SHong Zhang 1497d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1498d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1499d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1500d4002b98SHong Zhang 1501d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1502d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1503d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1504d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1505d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1506d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1507d4002b98SHong Zhang 1508d4002b98SHong Zhang When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 1509d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_rlenmax 1510d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1511d4002b98SHong Zhang One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local 1512d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1513d4002b98SHong Zhang In this case, the values of d_rlenmax,o_rlenmax are: 1514d4002b98SHong Zhang .vb 1515d4002b98SHong Zhang proc0 : d_rlenmax = 2, o_rlenmax = 2 1516d4002b98SHong Zhang proc1 : d_rlenmax = 3, o_rlenmax = 2 1517d4002b98SHong Zhang proc2 : d_rlenmax = 1, o_rlenmax = 4 1518d4002b98SHong Zhang .ve 1519d4002b98SHong Zhang We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 1520d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1521d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1522d4002b98SHong Zhang 34 values. 1523d4002b98SHong Zhang 1524d4002b98SHong Zhang When d_rlen, o_rlen parameters are specified, the storage is specified 1525a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1526d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1527d4002b98SHong Zhang .vb 1528d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1529d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1530d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1531d4002b98SHong Zhang .ve 1532d4002b98SHong Zhang Here the space allocated is still 37 though there are 34 nonzeros because 1533d4002b98SHong Zhang the allocation is always done according to rlenmax. 1534d4002b98SHong Zhang 1535d4002b98SHong Zhang Level: intermediate 1536d4002b98SHong Zhang 1537db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`, 1538db781477SPatrick Sanan `MATMPISELL`, `MatCreateMPISELLWithArrays()` 1539d4002b98SHong Zhang @*/ 1540d4002b98SHong Zhang PetscErrorCode MatCreateSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[],Mat *A) 1541d4002b98SHong Zhang { 1542d4002b98SHong Zhang PetscMPIInt size; 1543d4002b98SHong Zhang 1544d4002b98SHong Zhang PetscFunctionBegin; 15459566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 15469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 15479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 1548d4002b98SHong Zhang if (size > 1) { 15499566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPISELL)); 15509566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A,d_rlenmax,d_rlen,o_rlenmax,o_rlen)); 1551d4002b98SHong Zhang } else { 15529566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSELL)); 15539566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A,d_rlenmax,d_rlen)); 1554d4002b98SHong Zhang } 1555d4002b98SHong Zhang PetscFunctionReturn(0); 1556d4002b98SHong Zhang } 1557d4002b98SHong Zhang 1558d4002b98SHong Zhang PetscErrorCode MatMPISELLGetSeqSELL(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 1559d4002b98SHong Zhang { 1560d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1561d4002b98SHong Zhang PetscBool flg; 1562d4002b98SHong Zhang 1563d4002b98SHong Zhang PetscFunctionBegin; 15649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&flg)); 156528b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPISELL matrix as input"); 1566d4002b98SHong Zhang if (Ad) *Ad = a->A; 1567d4002b98SHong Zhang if (Ao) *Ao = a->B; 1568d4002b98SHong Zhang if (colmap) *colmap = a->garray; 1569d4002b98SHong Zhang PetscFunctionReturn(0); 1570d4002b98SHong Zhang } 1571d4002b98SHong Zhang 1572d4002b98SHong Zhang /*@C 1573d4002b98SHong Zhang MatMPISELLGetLocalMatCondensed - Creates a SeqSELL matrix from an MATMPISELL matrix by taking all its local rows and NON-ZERO columns 1574d4002b98SHong Zhang 1575d4002b98SHong Zhang Not Collective 1576d4002b98SHong Zhang 1577d4002b98SHong Zhang Input Parameters: 1578d4002b98SHong Zhang + A - the matrix 1579d4002b98SHong Zhang . scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 1580d4002b98SHong Zhang - row, col - index sets of rows and columns to extract (or NULL) 1581d4002b98SHong Zhang 1582d4002b98SHong Zhang Output Parameter: 1583d4002b98SHong Zhang . A_loc - the local sequential matrix generated 1584d4002b98SHong Zhang 1585d4002b98SHong Zhang Level: developer 1586d4002b98SHong Zhang 1587db781477SPatrick Sanan .seealso: `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()` 1588d4002b98SHong Zhang 1589d4002b98SHong Zhang @*/ 1590d4002b98SHong Zhang PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc) 1591d4002b98SHong Zhang { 1592d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1593d4002b98SHong Zhang PetscInt i,start,end,ncols,nzA,nzB,*cmap,imark,*idx; 1594d4002b98SHong Zhang IS isrowa,iscola; 1595d4002b98SHong Zhang Mat *aloc; 1596d4002b98SHong Zhang PetscBool match; 1597d4002b98SHong Zhang 1598d4002b98SHong Zhang PetscFunctionBegin; 15999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&match)); 160028b400f6SJacob Faibussowitsch PetscCheck(match,PetscObjectComm((PetscObject)A), PETSC_ERR_SUP,"Requires MATMPISELL matrix as input"); 16019566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed,A,0,0,0)); 1602d4002b98SHong Zhang if (!row) { 1603d4002b98SHong Zhang start = A->rmap->rstart; end = A->rmap->rend; 16049566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa)); 1605d4002b98SHong Zhang } else { 1606d4002b98SHong Zhang isrowa = *row; 1607d4002b98SHong Zhang } 1608d4002b98SHong Zhang if (!col) { 1609d4002b98SHong Zhang start = A->cmap->rstart; 1610d4002b98SHong Zhang cmap = a->garray; 1611d4002b98SHong Zhang nzA = a->A->cmap->n; 1612d4002b98SHong Zhang nzB = a->B->cmap->n; 16139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA+nzB, &idx)); 1614d4002b98SHong Zhang ncols = 0; 1615d4002b98SHong Zhang for (i=0; i<nzB; i++) { 1616d4002b98SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 1617d4002b98SHong Zhang else break; 1618d4002b98SHong Zhang } 1619d4002b98SHong Zhang imark = i; 1620d4002b98SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; 1621d4002b98SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; 16229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&iscola)); 1623d4002b98SHong Zhang } else { 1624d4002b98SHong Zhang iscola = *col; 1625d4002b98SHong Zhang } 1626d4002b98SHong Zhang if (scall != MAT_INITIAL_MATRIX) { 16279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1,&aloc)); 1628d4002b98SHong Zhang aloc[0] = *A_loc; 1629d4002b98SHong Zhang } 16309566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A,1,&isrowa,&iscola,scall,&aloc)); 1631d4002b98SHong Zhang *A_loc = aloc[0]; 16329566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1633d4002b98SHong Zhang if (!row) { 16349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowa)); 1635d4002b98SHong Zhang } 1636d4002b98SHong Zhang if (!col) { 16379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscola)); 1638d4002b98SHong Zhang } 16399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed,A,0,0,0)); 1640d4002b98SHong Zhang PetscFunctionReturn(0); 1641d4002b98SHong Zhang } 1642d4002b98SHong Zhang 1643d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1644d4002b98SHong Zhang 1645d4002b98SHong Zhang PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1646d4002b98SHong Zhang { 1647d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1648d4002b98SHong Zhang Mat B; 1649d4002b98SHong Zhang Mat_MPIAIJ *b; 1650d4002b98SHong Zhang 1651d4002b98SHong Zhang PetscFunctionBegin; 165228b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1653d4002b98SHong Zhang 165494a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 165594a8b381SRichard Tran Mills B = *newmat; 165694a8b381SRichard Tran Mills } else { 16579566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 16589566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 16599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 16609566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 16619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 16629566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 166394a8b381SRichard Tran Mills } 1664d4002b98SHong Zhang b = (Mat_MPIAIJ*) B->data; 166594a8b381SRichard Tran Mills 166694a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16679566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16689566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 166994a8b381SRichard Tran Mills } else { 16709566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16719566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16729566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16739566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16749566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 16769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 16779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 167994a8b381SRichard Tran Mills } 1680d4002b98SHong Zhang 1681d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16829566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1683d4002b98SHong Zhang } else { 1684d4002b98SHong Zhang *newmat = B; 1685d4002b98SHong Zhang } 1686d4002b98SHong Zhang PetscFunctionReturn(0); 1687d4002b98SHong Zhang } 1688d4002b98SHong Zhang 1689d4002b98SHong Zhang PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1690d4002b98SHong Zhang { 1691d4002b98SHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 1692d4002b98SHong Zhang Mat B; 1693d4002b98SHong Zhang Mat_MPISELL *b; 1694d4002b98SHong Zhang 1695d4002b98SHong Zhang PetscFunctionBegin; 169628b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1697d4002b98SHong Zhang 169894a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 169994a8b381SRichard Tran Mills B = *newmat; 170094a8b381SRichard Tran Mills } else { 17019566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 17029566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPISELL)); 17039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 17049566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 17059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 17069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 170794a8b381SRichard Tran Mills } 1708d4002b98SHong Zhang b = (Mat_MPISELL*) B->data; 170994a8b381SRichard Tran Mills 171094a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17119566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17129566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 171394a8b381SRichard Tran Mills } else { 17149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17169566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(A)); 17179566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17189566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 17209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 17219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 17229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 172394a8b381SRichard Tran Mills } 1724d4002b98SHong Zhang 1725d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17269566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1727d4002b98SHong Zhang } else { 1728d4002b98SHong Zhang *newmat = B; 1729d4002b98SHong Zhang } 1730d4002b98SHong Zhang PetscFunctionReturn(0); 1731d4002b98SHong Zhang } 1732d4002b98SHong Zhang 1733d4002b98SHong Zhang PetscErrorCode MatSOR_MPISELL(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1734d4002b98SHong Zhang { 1735d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 1736f4259b30SLisandro Dalcin Vec bb1=NULL; 1737d4002b98SHong Zhang 1738d4002b98SHong Zhang PetscFunctionBegin; 1739d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1741d4002b98SHong Zhang PetscFunctionReturn(0); 1742d4002b98SHong Zhang } 1743d4002b98SHong Zhang 1744d4002b98SHong Zhang if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) { 17459566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 1746d4002b98SHong Zhang } 1747d4002b98SHong Zhang 1748d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1749d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1751d4002b98SHong Zhang its--; 1752d4002b98SHong Zhang } 1753d4002b98SHong Zhang 1754d4002b98SHong Zhang while (its--) { 17559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1757d4002b98SHong Zhang 1758d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17599566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17609566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1761d4002b98SHong Zhang 1762d4002b98SHong Zhang /* local sweep */ 17639566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 1764d4002b98SHong Zhang } 1765d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1766d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1768d4002b98SHong Zhang its--; 1769d4002b98SHong Zhang } 1770d4002b98SHong Zhang while (its--) { 17719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17729566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1773d4002b98SHong Zhang 1774d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17759566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17769566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1777d4002b98SHong Zhang 1778d4002b98SHong Zhang /* local sweep */ 17799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 1780d4002b98SHong Zhang } 1781d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1782d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17839566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1784d4002b98SHong Zhang its--; 1785d4002b98SHong Zhang } 1786d4002b98SHong Zhang while (its--) { 17879566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17889566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1789d4002b98SHong Zhang 1790d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17919566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17929566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1793d4002b98SHong Zhang 1794d4002b98SHong Zhang /* local sweep */ 17959566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 1796d4002b98SHong Zhang } 1797d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel SOR not supported"); 1798d4002b98SHong Zhang 17999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1800d4002b98SHong Zhang 1801d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 1802d4002b98SHong Zhang PetscFunctionReturn(0); 1803d4002b98SHong Zhang } 1804d4002b98SHong Zhang 1805d4002b98SHong Zhang /*MC 1806d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1807d4002b98SHong Zhang 1808d4002b98SHong Zhang Options Database Keys: 1809d4002b98SHong Zhang . -mat_type MPISELL - sets the matrix type to "MPISELL" during a call to MatSetFromOptions() 1810d4002b98SHong Zhang 1811d4002b98SHong Zhang Level: beginner 1812d4002b98SHong Zhang 1813db781477SPatrick Sanan .seealso: `MatCreateSELL()` 1814d4002b98SHong Zhang M*/ 1815d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1816d4002b98SHong Zhang { 1817d4002b98SHong Zhang Mat_MPISELL *b; 1818d4002b98SHong Zhang PetscMPIInt size; 1819d4002b98SHong Zhang 1820d4002b98SHong Zhang PetscFunctionBegin; 18219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 18229566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 1823d4002b98SHong Zhang B->data = (void*)b; 18249566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 1825d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1826d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1827d4002b98SHong Zhang b->size = size; 18289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 1829d4002b98SHong Zhang /* build cache for off array entries formed */ 18309566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 1831d4002b98SHong Zhang 1832d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1833f4259b30SLisandro Dalcin b->colmap = NULL; 1834f4259b30SLisandro Dalcin b->garray = NULL; 1835d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1836d4002b98SHong Zhang 1837d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1838d4002b98SHong Zhang b->lvec = NULL; 1839d4002b98SHong Zhang b->Mvctx = NULL; 1840d4002b98SHong Zhang 1841d4002b98SHong Zhang /* stuff for MatGetRow() */ 1842f4259b30SLisandro Dalcin b->rowindices = NULL; 1843f4259b30SLisandro Dalcin b->rowvalues = NULL; 1844d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1845d4002b98SHong Zhang 18469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISELL)); 18479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISELL)); 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_MPISELL)); 18499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISELLSetPreallocation_C",MatMPISELLSetPreallocation_MPISELL)); 18509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisell_mpiaij_C",MatConvert_MPISELL_MPIAIJ)); 18519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPISELL)); 18529566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISELL)); 1853d4002b98SHong Zhang PetscFunctionReturn(0); 1854d4002b98SHong Zhang } 1855