1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 1111a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 1211a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 1311a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 1820f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 2267be906fSBarry Smith .seealso: `Mat`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL` 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25*ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPISELL(Mat Y, Vec D, InsertMode is) 26d71ae5a4SJacob Faibussowitsch { 27d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A, D, is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 34d4002b98SHong Zhang } 353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43da81f932SPierre Jolivet has an order N integer array but is fast to access. 44d4002b98SHong Zhang */ 45d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d71ae5a4SJacob Faibussowitsch { 47d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 48d4002b98SHong Zhang PetscInt n = sell->B->cmap->n, i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 53eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &sell->colmap)); 54c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(sell->colmap, sell->garray[i] + 1, i + 1)); 55d4002b98SHong Zhang #else 569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &sell->colmap)); 57d4002b98SHong Zhang for (i = 0; i < n; i++) sell->colmap[sell->garray[i]] = i + 1; 58d4002b98SHong Zhang #endif 593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60d4002b98SHong Zhang } 61d4002b98SHong Zhang 62d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row, col, value, addv, orow, ocol) \ 63d4002b98SHong Zhang { \ 64d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 65d4002b98SHong Zhang else high1 = nrow1; \ 66d4002b98SHong Zhang lastcol1 = col; \ 67d4002b98SHong Zhang while (high1 - low1 > 5) { \ 68d4002b98SHong Zhang t = (low1 + high1) / 2; \ 694f8ff0b3SHong Zhang if (cp1[sliceheight * t] > col) high1 = t; \ 70d4002b98SHong Zhang else low1 = t; \ 71d4002b98SHong Zhang } \ 72d4002b98SHong Zhang for (_i = low1; _i < high1; _i++) { \ 734f8ff0b3SHong Zhang if (cp1[sliceheight * _i] > col) break; \ 744f8ff0b3SHong Zhang if (cp1[sliceheight * _i] == col) { \ 754f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp1[sliceheight * _i] += value; \ 764f8ff0b3SHong Zhang else vp1[sliceheight * _i] = value; \ 772d1451d4SHong Zhang inserted = PETSC_TRUE; \ 78d4002b98SHong Zhang goto a_noinsert; \ 79d4002b98SHong Zhang } \ 80d4002b98SHong Zhang } \ 819371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 829371c9d4SSatish Balay low1 = 0; \ 839371c9d4SSatish Balay high1 = nrow1; \ 849371c9d4SSatish Balay goto a_noinsert; \ 859371c9d4SSatish Balay } \ 869371c9d4SSatish Balay if (nonew == 1) { \ 879371c9d4SSatish Balay low1 = 0; \ 889371c9d4SSatish Balay high1 = nrow1; \ 899371c9d4SSatish Balay goto a_noinsert; \ 909371c9d4SSatish Balay } \ 9108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 9207e43b41SHong Zhang MatSeqXSELLReallocateSELL(A, am, 1, nrow1, a->sliidx, a->sliceheight, row / sliceheight, row, col, a->colidx, a->val, cp1, vp1, nonew, MatScalar); \ 93d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 94d4002b98SHong Zhang for (ii = nrow1 - 1; ii >= _i; ii--) { \ 954f8ff0b3SHong Zhang cp1[sliceheight * (ii + 1)] = cp1[sliceheight * ii]; \ 964f8ff0b3SHong Zhang vp1[sliceheight * (ii + 1)] = vp1[sliceheight * ii]; \ 97d4002b98SHong Zhang } \ 984f8ff0b3SHong Zhang cp1[sliceheight * _i] = col; \ 994f8ff0b3SHong Zhang vp1[sliceheight * _i] = value; \ 1009371c9d4SSatish Balay a->nz++; \ 1019371c9d4SSatish Balay nrow1++; \ 1029371c9d4SSatish Balay A->nonzerostate++; \ 103d4002b98SHong Zhang a_noinsert:; \ 104d4002b98SHong Zhang a->rlen[row] = nrow1; \ 105d4002b98SHong Zhang } 106d4002b98SHong Zhang 107d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row, col, value, addv, orow, ocol) \ 108d4002b98SHong Zhang { \ 109d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 110d4002b98SHong Zhang else high2 = nrow2; \ 111d4002b98SHong Zhang lastcol2 = col; \ 112d4002b98SHong Zhang while (high2 - low2 > 5) { \ 113d4002b98SHong Zhang t = (low2 + high2) / 2; \ 1144f8ff0b3SHong Zhang if (cp2[sliceheight * t] > col) high2 = t; \ 115d4002b98SHong Zhang else low2 = t; \ 116d4002b98SHong Zhang } \ 117d4002b98SHong Zhang for (_i = low2; _i < high2; _i++) { \ 1184f8ff0b3SHong Zhang if (cp2[sliceheight * _i] > col) break; \ 1194f8ff0b3SHong Zhang if (cp2[sliceheight * _i] == col) { \ 1204f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp2[sliceheight * _i] += value; \ 1214f8ff0b3SHong Zhang else vp2[sliceheight * _i] = value; \ 1222d1451d4SHong Zhang inserted = PETSC_TRUE; \ 123d4002b98SHong Zhang goto b_noinsert; \ 124d4002b98SHong Zhang } \ 125d4002b98SHong Zhang } \ 1269371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 1279371c9d4SSatish Balay low2 = 0; \ 1289371c9d4SSatish Balay high2 = nrow2; \ 1299371c9d4SSatish Balay goto b_noinsert; \ 1309371c9d4SSatish Balay } \ 1319371c9d4SSatish Balay if (nonew == 1) { \ 1329371c9d4SSatish Balay low2 = 0; \ 1339371c9d4SSatish Balay high2 = nrow2; \ 1349371c9d4SSatish Balay goto b_noinsert; \ 1359371c9d4SSatish Balay } \ 13608401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 13707e43b41SHong Zhang MatSeqXSELLReallocateSELL(B, bm, 1, nrow2, b->sliidx, b->sliceheight, row / sliceheight, row, col, b->colidx, b->val, cp2, vp2, nonew, MatScalar); \ 138d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 139d4002b98SHong Zhang for (ii = nrow2 - 1; ii >= _i; ii--) { \ 1404f8ff0b3SHong Zhang cp2[sliceheight * (ii + 1)] = cp2[sliceheight * ii]; \ 1414f8ff0b3SHong Zhang vp2[sliceheight * (ii + 1)] = vp2[sliceheight * ii]; \ 142d4002b98SHong Zhang } \ 1434f8ff0b3SHong Zhang cp2[sliceheight * _i] = col; \ 1444f8ff0b3SHong Zhang vp2[sliceheight * _i] = value; \ 1459371c9d4SSatish Balay b->nz++; \ 1469371c9d4SSatish Balay nrow2++; \ 1479371c9d4SSatish Balay B->nonzerostate++; \ 148d4002b98SHong Zhang b_noinsert:; \ 149d4002b98SHong Zhang b->rlen[row] = nrow2; \ 150d4002b98SHong Zhang } 151d4002b98SHong Zhang 152d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPISELL(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 153d71ae5a4SJacob Faibussowitsch { 154d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 155d4002b98SHong Zhang PetscScalar value; 156d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, shift1, shift2; 157d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 158d4002b98SHong Zhang PetscBool roworiented = sell->roworiented; 159d4002b98SHong Zhang 160d4002b98SHong Zhang /* Some Variables required in the macro */ 161d4002b98SHong Zhang Mat A = sell->A; 162d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 163d4002b98SHong Zhang PetscBool ignorezeroentries = a->ignorezeroentries, found; 164d4002b98SHong Zhang Mat B = sell->B; 165d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 16607e43b41SHong Zhang PetscInt *cp1, *cp2, ii, _i, nrow1, nrow2, low1, high1, low2, high2, t, lastcol1, lastcol2, sliceheight = a->sliceheight; 167d4002b98SHong Zhang MatScalar *vp1, *vp2; 168d4002b98SHong Zhang 169d4002b98SHong Zhang PetscFunctionBegin; 170d4002b98SHong Zhang for (i = 0; i < m; i++) { 171d4002b98SHong Zhang if (im[i] < 0) continue; 1726bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 173d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 174d4002b98SHong Zhang row = im[i] - rstart; 175d4002b98SHong Zhang lastcol1 = -1; 17607e43b41SHong Zhang shift1 = a->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 177d4002b98SHong Zhang cp1 = a->colidx + shift1; 178d4002b98SHong Zhang vp1 = a->val + shift1; 179d4002b98SHong Zhang nrow1 = a->rlen[row]; 180d4002b98SHong Zhang low1 = 0; 181d4002b98SHong Zhang high1 = nrow1; 182d4002b98SHong Zhang lastcol2 = -1; 18307e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 184d4002b98SHong Zhang cp2 = b->colidx + shift2; 185d4002b98SHong Zhang vp2 = b->val + shift2; 186d4002b98SHong Zhang nrow2 = b->rlen[row]; 187d4002b98SHong Zhang low2 = 0; 188d4002b98SHong Zhang high2 = nrow2; 189d4002b98SHong Zhang 190d4002b98SHong Zhang for (j = 0; j < n; j++) { 191d4002b98SHong Zhang if (roworiented) value = v[i * n + j]; 192d4002b98SHong Zhang else value = v[i + j * m]; 193d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 194d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 195d4002b98SHong Zhang col = in[j] - cstart; 196d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A, row, col, value, addv, im[i], in[j], cp1, vp1, lastcol1, low1, high1); /* set one value */ 1972d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 1982d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) A->offloadmask = PETSC_OFFLOAD_CPU; 1992d1451d4SHong Zhang #endif 200f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 201f7d195e4SLawrence Mitchell continue; 202f7d195e4SLawrence Mitchell } else { 203f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 204d4002b98SHong Zhang if (mat->was_assembled) { 20548a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 206d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 207eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, in[j] + 1, 0, &col)); 208d4002b98SHong Zhang col--; 209d4002b98SHong Zhang #else 210d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 211d4002b98SHong Zhang #endif 212d4002b98SHong Zhang if (col < 0 && !((Mat_SeqSELL *)(sell->B->data))->nonew) { 2139566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 214d4002b98SHong Zhang col = in[j]; 215d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 216d4002b98SHong Zhang B = sell->B; 217d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 21807e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 219d4002b98SHong Zhang cp2 = b->colidx + shift2; 220d4002b98SHong Zhang vp2 = b->val + shift2; 221d4002b98SHong Zhang nrow2 = b->rlen[row]; 222d4002b98SHong Zhang low2 = 0; 223d4002b98SHong Zhang high2 = nrow2; 2242d1451d4SHong Zhang found = PETSC_FALSE; 225f7d195e4SLawrence Mitchell } else { 226f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 227f7d195e4SLawrence Mitchell } 228d4002b98SHong Zhang } else col = in[j]; 229d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B, row, col, value, addv, im[i], in[j], cp2, vp2, lastcol2, low2, high2); /* set one value */ 2302d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 2312d1451d4SHong Zhang if (B->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) B->offloadmask = PETSC_OFFLOAD_CPU; 2322d1451d4SHong Zhang #endif 233d4002b98SHong Zhang } 234d4002b98SHong Zhang } 235d4002b98SHong Zhang } else { 23628b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 237d4002b98SHong Zhang if (!sell->donotstash) { 238d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 239d4002b98SHong Zhang if (roworiented) { 2409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 241d4002b98SHong Zhang } else { 2429566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 243d4002b98SHong Zhang } 244d4002b98SHong Zhang } 245d4002b98SHong Zhang } 246d4002b98SHong Zhang } 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 248d4002b98SHong Zhang } 249d4002b98SHong Zhang 250*ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISELL(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 251d71ae5a4SJacob Faibussowitsch { 252d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 253d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 254d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 255d4002b98SHong Zhang 256d4002b98SHong Zhang PetscFunctionBegin; 257d4002b98SHong Zhang for (i = 0; i < m; i++) { 25854c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 25954c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 260d4002b98SHong Zhang if (idxm[i] >= rstart && idxm[i] < rend) { 261d4002b98SHong Zhang row = idxm[i] - rstart; 262d4002b98SHong Zhang for (j = 0; j < n; j++) { 26354c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 26454c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 265d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 266d4002b98SHong Zhang col = idxn[j] - cstart; 2679566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A, 1, &row, 1, &col, v + i * n + j)); 268d4002b98SHong Zhang } else { 26948a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 270d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 271eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, idxn[j] + 1, 0, &col)); 272d4002b98SHong Zhang col--; 273d4002b98SHong Zhang #else 274d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 275d4002b98SHong Zhang #endif 276d4002b98SHong Zhang if ((col < 0) || (sell->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 27748a46eb9SPierre Jolivet else PetscCall(MatGetValues(sell->B, 1, &row, 1, &col, v + i * n + j)); 278d4002b98SHong Zhang } 279d4002b98SHong Zhang } 280d4002b98SHong Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 281d4002b98SHong Zhang } 2823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283d4002b98SHong Zhang } 284d4002b98SHong Zhang 285d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat, Vec, Vec); 286d4002b98SHong Zhang 287*ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat, MatAssemblyType mode) 288d71ae5a4SJacob Faibussowitsch { 289d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 290d4002b98SHong Zhang PetscInt nstash, reallocs; 291d4002b98SHong Zhang 292d4002b98SHong Zhang PetscFunctionBegin; 2933ba16761SJacob Faibussowitsch if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 294d4002b98SHong Zhang 2959566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 2969566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 2979566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299d4002b98SHong Zhang } 300d4002b98SHong Zhang 301d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat, MatAssemblyType mode) 302d71ae5a4SJacob Faibussowitsch { 303d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 304d4002b98SHong Zhang PetscMPIInt n; 305d4002b98SHong Zhang PetscInt i, flg; 306d4002b98SHong Zhang PetscInt *row, *col; 307d4002b98SHong Zhang PetscScalar *val; 308d4002b98SHong Zhang PetscBool other_disassembled; 309d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 310d4002b98SHong Zhang PetscFunctionBegin; 311d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 312d4002b98SHong Zhang while (1) { 3139566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 314d4002b98SHong Zhang if (!flg) break; 315d4002b98SHong Zhang 316d4002b98SHong Zhang for (i = 0; i < n; i++) { /* assemble one by one */ 3179566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat, 1, row + i, 1, col + i, val + i, mat->insertmode)); 318d4002b98SHong Zhang } 319d4002b98SHong Zhang } 3209566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 321d4002b98SHong Zhang } 3222d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3232d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) sell->A->offloadmask = PETSC_OFFLOAD_CPU; 3242d1451d4SHong Zhang #endif 3259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A, mode)); 3269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A, mode)); 327d4002b98SHong Zhang 328d4002b98SHong Zhang /* 329d4002b98SHong Zhang determine if any processor has disassembled, if so we must 3306aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. 331d4002b98SHong Zhang */ 332d4002b98SHong Zhang /* 333d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 334d4002b98SHong Zhang no processor disassembled thus we can skip this stuff 335d4002b98SHong Zhang */ 336d4002b98SHong Zhang if (!((Mat_SeqSELL *)sell->B->data)->nonew) { 3375f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3382d1451d4SHong Zhang if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISELL(mat)); 339d4002b98SHong Zhang } 34048a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISELL(mat)); 3412d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3422d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && sell->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) sell->B->offloadmask = PETSC_OFFLOAD_CPU; 3432d1451d4SHong Zhang #endif 3449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B, mode)); 3459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B, mode)); 3469566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 347f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 349d4002b98SHong Zhang 350d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 351d4002b98SHong Zhang if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL *)(sell->A->data))->nonew) { 352d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 3531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 354d4002b98SHong Zhang } 3552d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3562d1451d4SHong Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 3572d1451d4SHong Zhang #endif 3583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 359d4002b98SHong Zhang } 360d4002b98SHong Zhang 361*ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISELL(Mat A) 362d71ae5a4SJacob Faibussowitsch { 363d4002b98SHong Zhang Mat_MPISELL *l = (Mat_MPISELL *)A->data; 364d4002b98SHong Zhang 365d4002b98SHong Zhang PetscFunctionBegin; 3669566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3679566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 3683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 369d4002b98SHong Zhang } 370d4002b98SHong Zhang 371*ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPISELL(Mat A, Vec xx, Vec yy) 372d71ae5a4SJacob Faibussowitsch { 373d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 374d4002b98SHong Zhang PetscInt nt; 375d4002b98SHong Zhang 376d4002b98SHong Zhang PetscFunctionBegin; 3779566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 37808401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 3799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3809566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 3819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3829566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 3833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384d4002b98SHong Zhang } 385d4002b98SHong Zhang 386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A, Vec bb, Vec xx) 387d71ae5a4SJacob Faibussowitsch { 388d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 389d4002b98SHong Zhang 390d4002b98SHong Zhang PetscFunctionBegin; 3919566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 3923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 393d4002b98SHong Zhang } 394d4002b98SHong Zhang 395*ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 396d71ae5a4SJacob Faibussowitsch { 397d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 398d4002b98SHong Zhang 399d4002b98SHong Zhang PetscFunctionBegin; 4009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 4019566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 4029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 4039566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 4043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405d4002b98SHong Zhang } 406d4002b98SHong Zhang 407*ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPISELL(Mat A, Vec xx, Vec yy) 408d71ae5a4SJacob Faibussowitsch { 409d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 410d4002b98SHong Zhang 411d4002b98SHong Zhang PetscFunctionBegin; 412d4002b98SHong Zhang /* do nondiagonal part */ 4139566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 414d4002b98SHong Zhang /* do local part */ 4159566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 416a29b4eb7SJunchao Zhang /* add partial results together */ 4179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 420d4002b98SHong Zhang } 421d4002b98SHong Zhang 422*ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPISELL(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 423d71ae5a4SJacob Faibussowitsch { 424d4002b98SHong Zhang MPI_Comm comm; 425d4002b98SHong Zhang Mat_MPISELL *Asell = (Mat_MPISELL *)Amat->data, *Bsell; 426d4002b98SHong Zhang Mat Adia = Asell->A, Bdia, Aoff, Boff, *Aoffs, *Boffs; 427d4002b98SHong Zhang IS Me, Notme; 428d4002b98SHong Zhang PetscInt M, N, first, last, *notme, i; 429d4002b98SHong Zhang PetscMPIInt size; 430d4002b98SHong Zhang 431d4002b98SHong Zhang PetscFunctionBegin; 432d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 4339371c9d4SSatish Balay Bsell = (Mat_MPISELL *)Bmat->data; 4349371c9d4SSatish Balay Bdia = Bsell->A; 4359566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, f)); 4363ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 4379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 4389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4393ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 440d4002b98SHong Zhang 441d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4429566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 4439566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 4449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 445d4002b98SHong Zhang for (i = 0; i < first; i++) notme[i] = i; 446d4002b98SHong Zhang for (i = last; i < M; i++) notme[i - last + first] = i; 4479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 4489566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 4499566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 450d4002b98SHong Zhang Aoff = Aoffs[0]; 4519566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 452d4002b98SHong Zhang Boff = Boffs[0]; 4539566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 4549566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 4559566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 4569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4589566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 4593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 460d4002b98SHong Zhang } 461d4002b98SHong Zhang 462*ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 463d71ae5a4SJacob Faibussowitsch { 464d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 465d4002b98SHong Zhang 466d4002b98SHong Zhang PetscFunctionBegin; 467d4002b98SHong Zhang /* do nondiagonal part */ 4689566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 469d4002b98SHong Zhang /* do local part */ 4709566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 471e4a140f6SJunchao Zhang /* add partial results together */ 4729566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4739566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 475d4002b98SHong Zhang } 476d4002b98SHong Zhang 477d4002b98SHong Zhang /* 478d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 479d4002b98SHong Zhang diagonal block 480d4002b98SHong Zhang */ 481*ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISELL(Mat A, Vec v) 482d71ae5a4SJacob Faibussowitsch { 483d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 484d4002b98SHong Zhang 485d4002b98SHong Zhang PetscFunctionBegin; 48608401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 487aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 4889566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 4893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 490d4002b98SHong Zhang } 491d4002b98SHong Zhang 492*ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPISELL(Mat A, PetscScalar aa) 493d71ae5a4SJacob Faibussowitsch { 494d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 495d4002b98SHong Zhang 496d4002b98SHong Zhang PetscFunctionBegin; 4979566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 4989566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 4993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 500d4002b98SHong Zhang } 501d4002b98SHong Zhang 502d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPISELL(Mat mat) 503d71ae5a4SJacob Faibussowitsch { 504d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 505d4002b98SHong Zhang 506d4002b98SHong Zhang PetscFunctionBegin; 5073ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5089566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 5099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 5109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 5119566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 512d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 513eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&sell->colmap)); 514d4002b98SHong Zhang #else 5159566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 516d4002b98SHong Zhang #endif 5179566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 5189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 5199566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 5209566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 5219566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 5229566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 523d4002b98SHong Zhang 5249566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 5269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 5279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 5289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISELLSetPreallocation_C", NULL)); 5299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpiaij_C", NULL)); 530b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 531b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpisellcuda_C", NULL)); 532b5917f1bSHong Zhang #endif 5339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 5343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 535d4002b98SHong Zhang } 536d4002b98SHong Zhang 537d4002b98SHong Zhang #include <petscdraw.h> 538*ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 539d71ae5a4SJacob Faibussowitsch { 540d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 541d4002b98SHong Zhang PetscMPIInt rank = sell->rank, size = sell->size; 542d4002b98SHong Zhang PetscBool isdraw, iascii, isbinary; 543d4002b98SHong Zhang PetscViewer sviewer; 544d4002b98SHong Zhang PetscViewerFormat format; 545d4002b98SHong Zhang 546d4002b98SHong Zhang PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 5489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 5499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 550d4002b98SHong Zhang if (iascii) { 5519566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 552d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 553d4002b98SHong Zhang MatInfo info; 5546335e310SSatish Balay PetscInt *inodes; 555d4002b98SHong Zhang 5569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 5579566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 5589566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, NULL, &inodes, NULL)); 5599566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 560d4002b98SHong Zhang if (!inodes) { 5619371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5629371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 563d4002b98SHong Zhang } else { 5649371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5659371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 566d4002b98SHong Zhang } 5679566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A, MAT_LOCAL, &info)); 5689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5699566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B, MAT_LOCAL, &info)); 5709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5719566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5729566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 5749566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx, viewer)); 5753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 576d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 577d4002b98SHong Zhang PetscInt inodecount, inodelimit, *inodes; 5789566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, &inodecount, &inodes, &inodelimit)); 579d4002b98SHong Zhang if (inodes) { 5809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 581d4002b98SHong Zhang } else { 5829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 583d4002b98SHong Zhang } 5843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 585d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 5863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 587d4002b98SHong Zhang } 588d4002b98SHong Zhang } else if (isbinary) { 589d4002b98SHong Zhang if (size == 1) { 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A, ((PetscObject)mat)->name)); 5919566063dSJacob Faibussowitsch PetscCall(MatView(sell->A, viewer)); 592d4002b98SHong Zhang } else { 5939566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 594d4002b98SHong Zhang } 5953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 596d4002b98SHong Zhang } else if (isdraw) { 597d4002b98SHong Zhang PetscDraw draw; 598d4002b98SHong Zhang PetscBool isnull; 5999566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 6009566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 6013ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 602d4002b98SHong Zhang } 603d4002b98SHong Zhang 604d4002b98SHong Zhang { 605d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 606d4002b98SHong Zhang Mat A; 607d4002b98SHong Zhang Mat_SeqSELL *Aloc; 608d4002b98SHong Zhang PetscInt M = mat->rmap->N, N = mat->cmap->N, *acolidx, row, col, i, j; 609d4002b98SHong Zhang MatScalar *aval; 610d4002b98SHong Zhang PetscBool isnonzero; 611d4002b98SHong Zhang 6129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 613dd400576SPatrick Sanan if (rank == 0) { 6149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 615d4002b98SHong Zhang } else { 6169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 617d4002b98SHong Zhang } 618d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 6199566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISELL)); 6209566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, 0, NULL, 0, NULL)); 6219566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 622d4002b98SHong Zhang 623d4002b98SHong Zhang /* copy over the A part */ 624d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->A->data; 6259371c9d4SSatish Balay acolidx = Aloc->colidx; 6269371c9d4SSatish Balay aval = Aloc->val; 627d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { /* loop over slices */ 628d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 62907e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 630d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 63107e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 632d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6339566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 634d4002b98SHong Zhang } 6359371c9d4SSatish Balay aval++; 6369371c9d4SSatish Balay acolidx++; 637d4002b98SHong Zhang } 638d4002b98SHong Zhang } 639d4002b98SHong Zhang 640d4002b98SHong Zhang /* copy over the B part */ 641d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->B->data; 6429371c9d4SSatish Balay acolidx = Aloc->colidx; 6439371c9d4SSatish Balay aval = Aloc->val; 644d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { 645d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 64607e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 647d4002b98SHong Zhang if (isnonzero) { 64807e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 649d4002b98SHong Zhang col = sell->garray[*acolidx]; 6509566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 651d4002b98SHong Zhang } 6529371c9d4SSatish Balay aval++; 6539371c9d4SSatish Balay acolidx++; 654d4002b98SHong Zhang } 655d4002b98SHong Zhang } 656d4002b98SHong Zhang 6579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 6589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 659d4002b98SHong Zhang /* 660d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 661d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 662d4002b98SHong Zhang */ 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 664dd400576SPatrick Sanan if (rank == 0) { 6659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL *)(A->data))->A, ((PetscObject)mat)->name)); 6669566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL(((Mat_MPISELL *)(A->data))->A, sviewer)); 667d4002b98SHong Zhang } 6689566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 6699566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6709566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 671d4002b98SHong Zhang } 6723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 673d4002b98SHong Zhang } 674d4002b98SHong Zhang 675*ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL(Mat mat, PetscViewer viewer) 676d71ae5a4SJacob Faibussowitsch { 677d4002b98SHong Zhang PetscBool iascii, isdraw, issocket, isbinary; 678d4002b98SHong Zhang 679d4002b98SHong Zhang PetscFunctionBegin; 6809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 68448a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat, viewer)); 6853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 686d4002b98SHong Zhang } 687d4002b98SHong Zhang 688*ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPISELL(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 689d71ae5a4SJacob Faibussowitsch { 690d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 691d4002b98SHong Zhang 692d4002b98SHong Zhang PetscFunctionBegin; 6939566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B, NULL, nghosts)); 694d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 6953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 696d4002b98SHong Zhang } 697d4002b98SHong Zhang 698*ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISELL(Mat matin, MatInfoType flag, MatInfo *info) 699d71ae5a4SJacob Faibussowitsch { 700d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 701d4002b98SHong Zhang Mat A = mat->A, B = mat->B; 7023966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 703d4002b98SHong Zhang 704d4002b98SHong Zhang PetscFunctionBegin; 705d4002b98SHong Zhang info->block_size = 1.0; 7069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 707d4002b98SHong Zhang 7089371c9d4SSatish Balay isend[0] = info->nz_used; 7099371c9d4SSatish Balay isend[1] = info->nz_allocated; 7109371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7119371c9d4SSatish Balay isend[3] = info->memory; 7129371c9d4SSatish Balay isend[4] = info->mallocs; 713d4002b98SHong Zhang 7149566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 715d4002b98SHong Zhang 7169371c9d4SSatish Balay isend[0] += info->nz_used; 7179371c9d4SSatish Balay isend[1] += info->nz_allocated; 7189371c9d4SSatish Balay isend[2] += info->nz_unneeded; 7199371c9d4SSatish Balay isend[3] += info->memory; 7209371c9d4SSatish Balay isend[4] += info->mallocs; 721d4002b98SHong Zhang if (flag == MAT_LOCAL) { 722d4002b98SHong Zhang info->nz_used = isend[0]; 723d4002b98SHong Zhang info->nz_allocated = isend[1]; 724d4002b98SHong Zhang info->nz_unneeded = isend[2]; 725d4002b98SHong Zhang info->memory = isend[3]; 726d4002b98SHong Zhang info->mallocs = isend[4]; 727d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 7281c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 729d4002b98SHong Zhang 730d4002b98SHong Zhang info->nz_used = irecv[0]; 731d4002b98SHong Zhang info->nz_allocated = irecv[1]; 732d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 733d4002b98SHong Zhang info->memory = irecv[3]; 734d4002b98SHong Zhang info->mallocs = irecv[4]; 735d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7361c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 737d4002b98SHong Zhang 738d4002b98SHong Zhang info->nz_used = irecv[0]; 739d4002b98SHong Zhang info->nz_allocated = irecv[1]; 740d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 741d4002b98SHong Zhang info->memory = irecv[3]; 742d4002b98SHong Zhang info->mallocs = irecv[4]; 743d4002b98SHong Zhang } 744d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 745d4002b98SHong Zhang info->fill_ratio_needed = 0; 746d4002b98SHong Zhang info->factor_mallocs = 0; 7473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 748d4002b98SHong Zhang } 749d4002b98SHong Zhang 750d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPISELL(Mat A, MatOption op, PetscBool flg) 751d71ae5a4SJacob Faibussowitsch { 752d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 753d4002b98SHong Zhang 754d4002b98SHong Zhang PetscFunctionBegin; 755d4002b98SHong Zhang switch (op) { 756d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 757d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 758d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 759d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 760d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 761d4002b98SHong Zhang case MAT_USE_INODES: 762d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 763d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7659566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 766d4002b98SHong Zhang break; 767d4002b98SHong Zhang case MAT_ROW_ORIENTED: 768d4002b98SHong Zhang MatCheckPreallocated(A, 1); 769d4002b98SHong Zhang a->roworiented = flg; 770d4002b98SHong Zhang 7719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 773d4002b98SHong Zhang break; 7748c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 775d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 776d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 777d71ae5a4SJacob Faibussowitsch break; 778d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 779d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 780d71ae5a4SJacob Faibussowitsch break; 781d4002b98SHong Zhang case MAT_SPD: 782d71ae5a4SJacob Faibussowitsch case MAT_SPD_ETERNAL: 783d71ae5a4SJacob Faibussowitsch break; 784d4002b98SHong Zhang case MAT_SYMMETRIC: 785d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7869566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 787d4002b98SHong Zhang break; 788d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 789d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7909566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 791d4002b98SHong Zhang break; 792d4002b98SHong Zhang case MAT_HERMITIAN: 793d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7949566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 795d4002b98SHong Zhang break; 796d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 797d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7989566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 799d4002b98SHong Zhang break; 800b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 801b94d7dedSBarry Smith MatCheckPreallocated(A, 1); 802b94d7dedSBarry Smith PetscCall(MatSetOption(a->A, op, flg)); 803b94d7dedSBarry Smith break; 804d71ae5a4SJacob Faibussowitsch default: 805d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 806d4002b98SHong Zhang } 8073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 808d4002b98SHong Zhang } 809d4002b98SHong Zhang 810*ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISELL(Mat mat, Vec ll, Vec rr) 811d71ae5a4SJacob Faibussowitsch { 812d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 813d4002b98SHong Zhang Mat a = sell->A, b = sell->B; 814d4002b98SHong Zhang PetscInt s1, s2, s3; 815d4002b98SHong Zhang 816d4002b98SHong Zhang PetscFunctionBegin; 8179566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 818d4002b98SHong Zhang if (rr) { 8199566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 82008401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 821d4002b98SHong Zhang /* Overlap communication with computation. */ 8229566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 823d4002b98SHong Zhang } 824d4002b98SHong Zhang if (ll) { 8259566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 82608401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 827dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 828d4002b98SHong Zhang } 829d4002b98SHong Zhang /* scale the diagonal block */ 830dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 831d4002b98SHong Zhang 832d4002b98SHong Zhang if (rr) { 833d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 835dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, sell->lvec); 836d4002b98SHong Zhang } 8373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 838d4002b98SHong Zhang } 839d4002b98SHong Zhang 840*ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 841d71ae5a4SJacob Faibussowitsch { 842d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 843d4002b98SHong Zhang 844d4002b98SHong Zhang PetscFunctionBegin; 8459566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 8463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 847d4002b98SHong Zhang } 848d4002b98SHong Zhang 849*ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISELL(Mat A, Mat B, PetscBool *flag) 850d71ae5a4SJacob Faibussowitsch { 851d4002b98SHong Zhang Mat_MPISELL *matB = (Mat_MPISELL *)B->data, *matA = (Mat_MPISELL *)A->data; 852d4002b98SHong Zhang Mat a, b, c, d; 853d4002b98SHong Zhang PetscBool flg; 854d4002b98SHong Zhang 855d4002b98SHong Zhang PetscFunctionBegin; 8569371c9d4SSatish Balay a = matA->A; 8579371c9d4SSatish Balay b = matA->B; 8589371c9d4SSatish Balay c = matB->A; 8599371c9d4SSatish Balay d = matB->B; 860d4002b98SHong Zhang 8619566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 86248a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 8631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 8643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 865d4002b98SHong Zhang } 866d4002b98SHong Zhang 867*ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISELL(Mat A, Mat B, MatStructure str) 868d71ae5a4SJacob Faibussowitsch { 869d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 870d4002b98SHong Zhang Mat_MPISELL *b = (Mat_MPISELL *)B->data; 871d4002b98SHong Zhang 872d4002b98SHong Zhang PetscFunctionBegin; 873d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 874d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 875d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 876d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 877d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 878d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 879d4002b98SHong Zhang then copying the submatrices */ 8809566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 881d4002b98SHong Zhang } else { 8829566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 8839566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 884d4002b98SHong Zhang } 8853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 886d4002b98SHong Zhang } 887d4002b98SHong Zhang 888*ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPISELL(Mat A) 889d71ae5a4SJacob Faibussowitsch { 890d4002b98SHong Zhang PetscFunctionBegin; 8919566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 8923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 893d4002b98SHong Zhang } 894d4002b98SHong Zhang 895d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat); 896d4002b98SHong Zhang 897*ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISELL(Mat mat) 898d71ae5a4SJacob Faibussowitsch { 8995f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 9005f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 901d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 902d4002b98SHong Zhang 9039566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 9049566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 9055f80ce2aSJacob Faibussowitsch } 9063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 907d4002b98SHong Zhang } 908d4002b98SHong Zhang 909*ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISELL(Mat A) 910d71ae5a4SJacob Faibussowitsch { 911d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 912d4002b98SHong Zhang 913d4002b98SHong Zhang PetscFunctionBegin; 9149566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 9159566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d4002b98SHong Zhang } 918d4002b98SHong Zhang 919*ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 920d71ae5a4SJacob Faibussowitsch { 921d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 922d4002b98SHong Zhang 923d4002b98SHong Zhang PetscFunctionBegin; 9249566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 9259566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 9263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 927d4002b98SHong Zhang } 928d4002b98SHong Zhang 929*ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A, const PetscScalar **values) 930d71ae5a4SJacob Faibussowitsch { 931d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 932d4002b98SHong Zhang 933d4002b98SHong Zhang PetscFunctionBegin; 9349566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 935d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 9363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 937d4002b98SHong Zhang } 938d4002b98SHong Zhang 939d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPISELL(Mat x, PetscRandom rctx) 940d71ae5a4SJacob Faibussowitsch { 941d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)x->data; 942d4002b98SHong Zhang 943d4002b98SHong Zhang PetscFunctionBegin; 9449566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A, rctx)); 9459566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B, rctx)); 9469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 9479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 9483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 949d4002b98SHong Zhang } 950d4002b98SHong Zhang 951d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPISELL(Mat A, PetscOptionItems *PetscOptionsObject) 952d71ae5a4SJacob Faibussowitsch { 953d4002b98SHong Zhang PetscFunctionBegin; 954d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPISELL options"); 955d0609cedSBarry Smith PetscOptionsHeadEnd(); 9563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 957d4002b98SHong Zhang } 958d4002b98SHong Zhang 959*ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPISELL(Mat Y, PetscScalar a) 960d71ae5a4SJacob Faibussowitsch { 961d4002b98SHong Zhang Mat_MPISELL *msell = (Mat_MPISELL *)Y->data; 962d4002b98SHong Zhang Mat_SeqSELL *sell = (Mat_SeqSELL *)msell->A->data; 963d4002b98SHong Zhang 964d4002b98SHong Zhang PetscFunctionBegin; 965d4002b98SHong Zhang if (!Y->preallocated) { 9669566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y, 1, NULL, 0, NULL)); 967d4002b98SHong Zhang } else if (!sell->nz) { 968d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9699566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A, 1, NULL)); 970d4002b98SHong Zhang sell->nonew = nonew; 971d4002b98SHong Zhang } 9729566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 9733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 974d4002b98SHong Zhang } 975d4002b98SHong Zhang 976*ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISELL(Mat A, PetscBool *missing, PetscInt *d) 977d71ae5a4SJacob Faibussowitsch { 978d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 979d4002b98SHong Zhang 980d4002b98SHong Zhang PetscFunctionBegin; 98108401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 9829566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 983d4002b98SHong Zhang if (d) { 984d4002b98SHong Zhang PetscInt rstart; 9859566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 986d4002b98SHong Zhang *d += rstart; 987d4002b98SHong Zhang } 9883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 989d4002b98SHong Zhang } 990d4002b98SHong Zhang 991*ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A, Mat *a) 992d71ae5a4SJacob Faibussowitsch { 993d4002b98SHong Zhang PetscFunctionBegin; 994d4002b98SHong Zhang *a = ((Mat_MPISELL *)A->data)->A; 9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 996d4002b98SHong Zhang } 997d4002b98SHong Zhang 998d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 999f4259b30SLisandro Dalcin NULL, 1000f4259b30SLisandro Dalcin NULL, 1001d4002b98SHong Zhang MatMult_MPISELL, 1002d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 1003d4002b98SHong Zhang MatMultTranspose_MPISELL, 1004d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 1005f4259b30SLisandro Dalcin NULL, 1006f4259b30SLisandro Dalcin NULL, 1007f4259b30SLisandro Dalcin NULL, 1008f4259b30SLisandro Dalcin /*10*/ NULL, 1009f4259b30SLisandro Dalcin NULL, 1010f4259b30SLisandro Dalcin NULL, 1011d4002b98SHong Zhang MatSOR_MPISELL, 1012f4259b30SLisandro Dalcin NULL, 1013d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 1014d4002b98SHong Zhang MatEqual_MPISELL, 1015d4002b98SHong Zhang MatGetDiagonal_MPISELL, 1016d4002b98SHong Zhang MatDiagonalScale_MPISELL, 1017f4259b30SLisandro Dalcin NULL, 1018d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 1019d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 1020d4002b98SHong Zhang MatSetOption_MPISELL, 1021d4002b98SHong Zhang MatZeroEntries_MPISELL, 1022f4259b30SLisandro Dalcin /*24*/ NULL, 1023f4259b30SLisandro Dalcin NULL, 1024f4259b30SLisandro Dalcin NULL, 1025f4259b30SLisandro Dalcin NULL, 1026f4259b30SLisandro Dalcin NULL, 1027d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 1028f4259b30SLisandro Dalcin NULL, 1029f4259b30SLisandro Dalcin NULL, 1030d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1031f4259b30SLisandro Dalcin NULL, 1032d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1033f4259b30SLisandro Dalcin NULL, 1034f4259b30SLisandro Dalcin NULL, 1035f4259b30SLisandro Dalcin NULL, 1036f4259b30SLisandro Dalcin NULL, 1037f4259b30SLisandro Dalcin /*39*/ NULL, 1038f4259b30SLisandro Dalcin NULL, 1039f4259b30SLisandro Dalcin NULL, 1040d4002b98SHong Zhang MatGetValues_MPISELL, 1041d4002b98SHong Zhang MatCopy_MPISELL, 1042f4259b30SLisandro Dalcin /*44*/ NULL, 1043d4002b98SHong Zhang MatScale_MPISELL, 1044d4002b98SHong Zhang MatShift_MPISELL, 1045d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1046f4259b30SLisandro Dalcin NULL, 1047d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1048f4259b30SLisandro Dalcin NULL, 1049f4259b30SLisandro Dalcin NULL, 1050f4259b30SLisandro Dalcin NULL, 1051f4259b30SLisandro Dalcin NULL, 1052d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1053f4259b30SLisandro Dalcin NULL, 1054d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1055f4259b30SLisandro Dalcin NULL, 1056f4259b30SLisandro Dalcin NULL, 1057f4259b30SLisandro Dalcin /*59*/ NULL, 1058d4002b98SHong Zhang MatDestroy_MPISELL, 1059d4002b98SHong Zhang MatView_MPISELL, 1060f4259b30SLisandro Dalcin NULL, 1061f4259b30SLisandro Dalcin NULL, 1062f4259b30SLisandro Dalcin /*64*/ NULL, 1063f4259b30SLisandro Dalcin NULL, 1064f4259b30SLisandro Dalcin NULL, 1065f4259b30SLisandro Dalcin NULL, 1066f4259b30SLisandro Dalcin NULL, 1067f4259b30SLisandro Dalcin /*69*/ NULL, 1068f4259b30SLisandro Dalcin NULL, 1069f4259b30SLisandro Dalcin NULL, 1070f4259b30SLisandro Dalcin NULL, 1071f4259b30SLisandro Dalcin NULL, 1072f4259b30SLisandro Dalcin NULL, 1073d4002b98SHong Zhang /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */ 1074d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1075f4259b30SLisandro Dalcin NULL, 1076f4259b30SLisandro Dalcin NULL, 1077f4259b30SLisandro Dalcin NULL, 1078f4259b30SLisandro Dalcin /*80*/ NULL, 1079f4259b30SLisandro Dalcin NULL, 1080f4259b30SLisandro Dalcin NULL, 1081f4259b30SLisandro Dalcin /*83*/ NULL, 1082f4259b30SLisandro Dalcin NULL, 1083f4259b30SLisandro Dalcin NULL, 1084f4259b30SLisandro Dalcin NULL, 1085f4259b30SLisandro Dalcin NULL, 1086f4259b30SLisandro Dalcin NULL, 1087f4259b30SLisandro Dalcin /*89*/ NULL, 1088f4259b30SLisandro Dalcin NULL, 1089f4259b30SLisandro Dalcin NULL, 1090f4259b30SLisandro Dalcin NULL, 1091f4259b30SLisandro Dalcin NULL, 1092f4259b30SLisandro Dalcin /*94*/ NULL, 1093f4259b30SLisandro Dalcin NULL, 1094f4259b30SLisandro Dalcin NULL, 1095f4259b30SLisandro Dalcin NULL, 1096f4259b30SLisandro Dalcin NULL, 1097f4259b30SLisandro Dalcin /*99*/ NULL, 1098f4259b30SLisandro Dalcin NULL, 1099f4259b30SLisandro Dalcin NULL, 1100d4002b98SHong Zhang MatConjugate_MPISELL, 1101f4259b30SLisandro Dalcin NULL, 1102f4259b30SLisandro Dalcin /*104*/ NULL, 1103d4002b98SHong Zhang MatRealPart_MPISELL, 1104d4002b98SHong Zhang MatImaginaryPart_MPISELL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin NULL, 1107f4259b30SLisandro Dalcin /*109*/ NULL, 1108f4259b30SLisandro Dalcin NULL, 1109f4259b30SLisandro Dalcin NULL, 1110f4259b30SLisandro Dalcin NULL, 1111d4002b98SHong Zhang MatMissingDiagonal_MPISELL, 1112f4259b30SLisandro Dalcin /*114*/ NULL, 1113f4259b30SLisandro Dalcin NULL, 1114d4002b98SHong Zhang MatGetGhosts_MPISELL, 1115f4259b30SLisandro Dalcin NULL, 1116f4259b30SLisandro Dalcin NULL, 1117f4259b30SLisandro Dalcin /*119*/ NULL, 1118f4259b30SLisandro Dalcin NULL, 1119f4259b30SLisandro Dalcin NULL, 1120f4259b30SLisandro Dalcin NULL, 1121f4259b30SLisandro Dalcin NULL, 1122f4259b30SLisandro Dalcin /*124*/ NULL, 1123f4259b30SLisandro Dalcin NULL, 1124d4002b98SHong Zhang MatInvertBlockDiagonal_MPISELL, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin NULL, 1127f4259b30SLisandro Dalcin /*129*/ NULL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin NULL, 1130f4259b30SLisandro Dalcin NULL, 1131f4259b30SLisandro Dalcin NULL, 1132f4259b30SLisandro Dalcin /*134*/ NULL, 1133f4259b30SLisandro Dalcin NULL, 1134f4259b30SLisandro Dalcin NULL, 1135f4259b30SLisandro Dalcin NULL, 1136f4259b30SLisandro Dalcin NULL, 1137f4259b30SLisandro Dalcin /*139*/ NULL, 1138f4259b30SLisandro Dalcin NULL, 1139f4259b30SLisandro Dalcin NULL, 1140d4002b98SHong Zhang MatFDColoringSetUp_MPIXAIJ, 1141f4259b30SLisandro Dalcin NULL, 1142d70f29a3SPierre Jolivet /*144*/ NULL, 1143d70f29a3SPierre Jolivet NULL, 1144d70f29a3SPierre Jolivet NULL, 114599a7f59eSMark Adams NULL, 114699a7f59eSMark Adams NULL, 11477fb60732SBarry Smith NULL, 1148dec0b466SHong Zhang /*150*/ NULL, 1149dec0b466SHong Zhang NULL}; 1150d4002b98SHong Zhang 1151*ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISELL(Mat mat) 1152d71ae5a4SJacob Faibussowitsch { 1153d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 1154d4002b98SHong Zhang 1155d4002b98SHong Zhang PetscFunctionBegin; 11569566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 11579566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 11583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1159d4002b98SHong Zhang } 1160d4002b98SHong Zhang 1161*ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 1162d71ae5a4SJacob Faibussowitsch { 1163d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 1164d4002b98SHong Zhang 1165d4002b98SHong Zhang PetscFunctionBegin; 11669566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 11679566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 11683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1169d4002b98SHong Zhang } 1170d4002b98SHong Zhang 1171d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[]) 1172d71ae5a4SJacob Faibussowitsch { 1173d4002b98SHong Zhang Mat_MPISELL *b; 1174d4002b98SHong Zhang 1175d4002b98SHong Zhang PetscFunctionBegin; 11769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 11779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1178d4002b98SHong Zhang b = (Mat_MPISELL *)B->data; 1179d4002b98SHong Zhang 1180d4002b98SHong Zhang if (!B->preallocated) { 1181d4002b98SHong Zhang /* Explicitly create 2 MATSEQSELL matrices. */ 11829566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 11839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 11849566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 11859566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSELL)); 11869566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 11879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, B->cmap->N, B->rmap->n, B->cmap->N)); 11889566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 11899566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQSELL)); 1190d4002b98SHong Zhang } 1191d4002b98SHong Zhang 11929566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A, d_rlenmax, d_rlen)); 11939566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B, o_rlenmax, o_rlen)); 1194d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 1195d4002b98SHong Zhang B->was_assembled = PETSC_FALSE; 1196d4002b98SHong Zhang /* 1197d4002b98SHong Zhang critical for MatAssemblyEnd to work. 1198d4002b98SHong Zhang MatAssemblyBegin checks it to set up was_assembled 1199d4002b98SHong Zhang and MatAssemblyEnd checks was_assembled to determine whether to build garray 1200d4002b98SHong Zhang */ 1201d4002b98SHong Zhang B->assembled = PETSC_FALSE; 12023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1203d4002b98SHong Zhang } 1204d4002b98SHong Zhang 1205d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPISELL(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 1206d71ae5a4SJacob Faibussowitsch { 1207d4002b98SHong Zhang Mat mat; 1208d4002b98SHong Zhang Mat_MPISELL *a, *oldmat = (Mat_MPISELL *)matin->data; 1209d4002b98SHong Zhang 1210d4002b98SHong Zhang PetscFunctionBegin; 1211f4259b30SLisandro Dalcin *newmat = NULL; 12129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 12139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 12149566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 12159566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 1216d4002b98SHong Zhang a = (Mat_MPISELL *)mat->data; 1217d4002b98SHong Zhang 1218d4002b98SHong Zhang mat->factortype = matin->factortype; 1219d4002b98SHong Zhang mat->assembled = PETSC_TRUE; 1220d4002b98SHong Zhang mat->insertmode = NOT_SET_VALUES; 1221d4002b98SHong Zhang mat->preallocated = PETSC_TRUE; 1222d4002b98SHong Zhang 1223d4002b98SHong Zhang a->size = oldmat->size; 1224d4002b98SHong Zhang a->rank = oldmat->rank; 1225d4002b98SHong Zhang a->donotstash = oldmat->donotstash; 1226d4002b98SHong Zhang a->roworiented = oldmat->roworiented; 1227f4259b30SLisandro Dalcin a->rowindices = NULL; 1228f4259b30SLisandro Dalcin a->rowvalues = NULL; 1229d4002b98SHong Zhang a->getrowactive = PETSC_FALSE; 1230d4002b98SHong Zhang 12319566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 12329566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 1233d4002b98SHong Zhang 1234d4002b98SHong Zhang if (oldmat->colmap) { 1235d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 1236eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 1237d4002b98SHong Zhang #else 12389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 12399566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 1240d4002b98SHong Zhang #endif 1241f4259b30SLisandro Dalcin } else a->colmap = NULL; 1242d4002b98SHong Zhang if (oldmat->garray) { 1243d4002b98SHong Zhang PetscInt len; 1244d4002b98SHong Zhang len = oldmat->B->cmap->n; 12459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 12469566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 1247f4259b30SLisandro Dalcin } else a->garray = NULL; 1248d4002b98SHong Zhang 12499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 12509566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 12519566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 12529566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 12539566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 1254d4002b98SHong Zhang *newmat = mat; 12553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1256d4002b98SHong Zhang } 1257d4002b98SHong Zhang 1258d4002b98SHong Zhang /*@C 125911a5261eSBarry Smith MatMPISELLSetPreallocation - Preallocates memory for a `MATMPISELL` sparse parallel matrix in sell format. 1260d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 126167be906fSBarry Smith setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 1262d4002b98SHong Zhang 1263d083f849SBarry Smith Collective 1264d4002b98SHong Zhang 1265d4002b98SHong Zhang Input Parameters: 1266d4002b98SHong Zhang + B - the matrix 1267d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1268d4002b98SHong Zhang (same value is used for all local rows) 1269d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1270d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 127167be906fSBarry Smith or NULL (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 1272d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1273d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1274d4002b98SHong Zhang the diagonal entry even if it is zero. 1275d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1276d4002b98SHong Zhang submatrix (same value is used for all local rows). 1277d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1278d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 127967be906fSBarry Smith each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 1280d4002b98SHong Zhang structure. The size of this array is equal to the number 1281d4002b98SHong Zhang of local rows, i.e 'm'. 1282d4002b98SHong Zhang 1283d4002b98SHong Zhang Example usage: 1284d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1285d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1286d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 128767be906fSBarry Smith as follows 1288d4002b98SHong Zhang 1289d4002b98SHong Zhang .vb 1290d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1291d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1292d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1293d4002b98SHong Zhang ------------------------------------- 1294d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1295d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1296d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1297d4002b98SHong Zhang ------------------------------------- 1298d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1299d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1300d4002b98SHong Zhang .ve 1301d4002b98SHong Zhang 130227430b45SBarry Smith This can be represented as a collection of submatrices as 1303d4002b98SHong Zhang 1304d4002b98SHong Zhang .vb 1305d4002b98SHong Zhang A B C 1306d4002b98SHong Zhang D E F 1307d4002b98SHong Zhang G H I 1308d4002b98SHong Zhang .ve 1309d4002b98SHong Zhang 1310d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1311d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1312d4002b98SHong Zhang 1313d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1314d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1315d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1316d4002b98SHong Zhang 1317d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1318d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1319d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1320d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 132127430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 1322d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1323d4002b98SHong Zhang 132467be906fSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 1325d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_nz 1326d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 132767be906fSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 1328d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 132927430b45SBarry Smith In this case, the values of d_nz,o_nz are 1330d4002b98SHong Zhang .vb 133127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 133227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 133327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 1334d4002b98SHong Zhang .ve 1335d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1336d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1337d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1338d4002b98SHong Zhang 34 values. 1339d4002b98SHong Zhang 134067be906fSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 1341a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 134227430b45SBarry Smith In the above case the values for d_nnz,o_nnz are 1343d4002b98SHong Zhang .vb 134427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 134527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 134627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 1347d4002b98SHong Zhang .ve 1348d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1349d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1350d4002b98SHong Zhang 1351d4002b98SHong Zhang Level: intermediate 1352d4002b98SHong Zhang 135367be906fSBarry Smith Notes: 135467be906fSBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 135567be906fSBarry Smith 135667be906fSBarry Smith The stored row and column indices begin with zero. 135767be906fSBarry Smith 135867be906fSBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 135967be906fSBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 136067be906fSBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 136167be906fSBarry Smith 136267be906fSBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 136367be906fSBarry Smith as the submatrix which is obtained by extraction the part corresponding to 136467be906fSBarry Smith the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 136567be906fSBarry Smith first row that belongs to the processor, r2 is the last row belonging to 136667be906fSBarry Smith the this processor, and c1-c2 is range of indices of the local part of a 136767be906fSBarry Smith vector suitable for applying the matrix to. This is an mxn matrix. In the 136867be906fSBarry Smith common case of a square matrix, the row and column ranges are the same and 136967be906fSBarry Smith the DIAGONAL part is also square. The remaining portion of the local 137067be906fSBarry Smith submatrix (mxN) constitute the OFF-DIAGONAL portion. 137167be906fSBarry Smith 137267be906fSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 137367be906fSBarry Smith 137467be906fSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 137567be906fSBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 137667be906fSBarry Smith You can also run with the option -info and look for messages with the string 137767be906fSBarry Smith malloc in them to see if additional memory allocation was needed. 137867be906fSBarry Smith 137967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`, 138011a5261eSBarry Smith `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`, `MATSELL` 1381d4002b98SHong Zhang @*/ 1382d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISELLSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 1383d71ae5a4SJacob Faibussowitsch { 1384d4002b98SHong Zhang PetscFunctionBegin; 1385d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1386d4002b98SHong Zhang PetscValidType(B, 1); 1387cac4c232SBarry Smith PetscTryMethod(B, "MatMPISELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389d4002b98SHong Zhang } 1390d4002b98SHong Zhang 1391ed73aabaSBarry Smith /*MC 1392ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1393ed73aabaSBarry Smith based on the sliced Ellpack format 1394ed73aabaSBarry Smith 139527430b45SBarry Smith Options Database Key: 139620f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 1397ed73aabaSBarry Smith 1398ed73aabaSBarry Smith Level: beginner 1399ed73aabaSBarry Smith 140067be906fSBarry Smith .seealso: `Mat`, `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 1401ed73aabaSBarry Smith M*/ 1402ed73aabaSBarry Smith 1403d4002b98SHong Zhang /*@C 140411a5261eSBarry Smith MatCreateSELL - Creates a sparse parallel matrix in `MATSELL` format. 1405d4002b98SHong Zhang 1406d083f849SBarry Smith Collective 1407d4002b98SHong Zhang 1408d4002b98SHong Zhang Input Parameters: 1409d4002b98SHong Zhang + comm - MPI communicator 141011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 1411d4002b98SHong Zhang This value should be the same as the local size used in creating the 1412d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1413d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 141420f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 141520f4b53cSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 141620f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 141720f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 1418d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1419d4002b98SHong Zhang (same value is used for all local rows) 1420d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1421d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 142220f4b53cSBarry Smith or `NULL`, if d_rlenmax is used to specify the nonzero structure. 142320f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 1424d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1425d4002b98SHong Zhang submatrix (same value is used for all local rows). 1426d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1427d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 142820f4b53cSBarry Smith each row) or `NULL`, if `o_rlenmax` is used to specify the nonzero 1429d4002b98SHong Zhang structure. The size of this array is equal to the number 143020f4b53cSBarry Smith of local rows, i.e `m`. 1431d4002b98SHong Zhang 1432d4002b98SHong Zhang Output Parameter: 1433d4002b98SHong Zhang . A - the matrix 1434d4002b98SHong Zhang 143527430b45SBarry Smith Options Database Key: 1436fe59aa6dSJacob Faibussowitsch . -mat_sell_oneindex - Internally use indexing starting at 1 143727430b45SBarry Smith rather than 0. When calling `MatSetValues()`, 143827430b45SBarry Smith the user still MUST index entries starting at 0! 143927430b45SBarry Smith 144027430b45SBarry Smith Example: 144127430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 144227430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 144327430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 144427430b45SBarry Smith as follows 144527430b45SBarry Smith 144627430b45SBarry Smith .vb 144727430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 144827430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 144927430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 145027430b45SBarry Smith ------------------------------------- 145127430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 145227430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 145327430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 145427430b45SBarry Smith ------------------------------------- 145527430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 145627430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 145727430b45SBarry Smith .ve 145827430b45SBarry Smith 145920f4b53cSBarry Smith This can be represented as a collection of submatrices as 146027430b45SBarry Smith .vb 146127430b45SBarry Smith A B C 146227430b45SBarry Smith D E F 146327430b45SBarry Smith G H I 146427430b45SBarry Smith .ve 146527430b45SBarry Smith 146627430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 146727430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 146827430b45SBarry Smith 146927430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 147027430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 147127430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 147227430b45SBarry Smith 147327430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 147427430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 147527430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 147627430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 147727430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 147827430b45SBarry Smith matrix, ans [DF] as another `MATSEQSELL` matrix. 147927430b45SBarry Smith 148027430b45SBarry Smith When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 148127430b45SBarry Smith allocated for every row of the local diagonal submatrix, and o_rlenmax 148227430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 148327430b45SBarry Smith One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local 148427430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 148520f4b53cSBarry Smith In this case, the values of d_rlenmax,o_rlenmax are 148627430b45SBarry Smith .vb 148720f4b53cSBarry Smith proc0 - d_rlenmax = 2, o_rlenmax = 2 148820f4b53cSBarry Smith proc1 - d_rlenmax = 3, o_rlenmax = 2 148920f4b53cSBarry Smith proc2 - d_rlenmax = 1, o_rlenmax = 4 149027430b45SBarry Smith .ve 149127430b45SBarry Smith We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 149227430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 149327430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 149427430b45SBarry Smith 34 values. 149527430b45SBarry Smith 149620f4b53cSBarry Smith When `d_rlen`, `o_rlen` parameters are specified, the storage is specified 149727430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 149820f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 149927430b45SBarry Smith .vb 150020f4b53cSBarry Smith proc0 - d_nnz = [2,2,2] and o_nnz = [2,2,2] 150120f4b53cSBarry Smith proc1 - d_nnz = [3,3,2] and o_nnz = [2,1,1] 150220f4b53cSBarry Smith proc2 - d_nnz = [1,1] and o_nnz = [4,4] 150327430b45SBarry Smith .ve 150427430b45SBarry Smith Here the space allocated is still 37 though there are 34 nonzeros because 150527430b45SBarry Smith the allocation is always done according to rlenmax. 150627430b45SBarry Smith 150727430b45SBarry Smith Level: intermediate 150827430b45SBarry Smith 150927430b45SBarry Smith Notes: 151011a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 1511f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 151211a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 1513d4002b98SHong Zhang 1514d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1515d4002b98SHong Zhang 151620f4b53cSBarry Smith `m`, `n`, `M`, `N` parameters specify the size of the matrix, and its partitioning across 151720f4b53cSBarry Smith processors, while `d_rlenmax`, `d_rlen`, `o_rlenmax` , `o_rlen` parameters specify the approximate 1518d4002b98SHong Zhang storage requirements for this matrix. 1519d4002b98SHong Zhang 152011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 1521d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1522d4002b98SHong Zhang that argument. 1523d4002b98SHong Zhang 1524d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1525d4002b98SHong Zhang (possibly both). 1526d4002b98SHong Zhang 1527d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1528d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1529d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1530d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 153120f4b53cSBarry Smith values corresponding to [`m` x `N`] submatrix. 1532d4002b98SHong Zhang 1533d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1534d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 153520f4b53cSBarry Smith partition etc.. where n0,n1,n2... are the input parameter `n`. 1536d4002b98SHong Zhang 1537d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 153820f4b53cSBarry Smith is the submatrix corresponding to the rows and columns `m`, `n` 1539d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1540d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1541d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1542d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1543d4002b98SHong Zhang illustrates this concept. 1544d4002b98SHong Zhang 1545d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1546d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1547d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1548d4002b98SHong Zhang local matrix (a rectangular submatrix). 1549d4002b98SHong Zhang 155020f4b53cSBarry Smith If `o_rlen`, `d_rlen` are specified, then `o_rlenmax`, and `d_rlenmax` are ignored. 1551d4002b98SHong Zhang 1552d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 155311a5261eSBarry Smith type `MATSEQSELL` is returned. If a matrix of type `MATMPISELL` is desired for this 155427430b45SBarry Smith type of communicator, use the construction mechanism 1555d4002b98SHong Zhang .vb 155627430b45SBarry Smith MatCreate(...,&A); 155727430b45SBarry Smith MatSetType(A,MATMPISELL); 155827430b45SBarry Smith MatSetSizes(A, m,n,M,N); 155927430b45SBarry Smith MatMPISELLSetPreallocation(A,...); 1560d4002b98SHong Zhang .ve 1561d4002b98SHong Zhang 156267be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`, 1563db781477SPatrick Sanan `MATMPISELL`, `MatCreateMPISELLWithArrays()` 1564d4002b98SHong Zhang @*/ 1565d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[], Mat *A) 1566d71ae5a4SJacob Faibussowitsch { 1567d4002b98SHong Zhang PetscMPIInt size; 1568d4002b98SHong Zhang 1569d4002b98SHong Zhang PetscFunctionBegin; 15709566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 15719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 15729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1573d4002b98SHong Zhang if (size > 1) { 15749566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISELL)); 15759566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A, d_rlenmax, d_rlen, o_rlenmax, o_rlen)); 1576d4002b98SHong Zhang } else { 15779566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 15789566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A, d_rlenmax, d_rlen)); 1579d4002b98SHong Zhang } 15803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1581d4002b98SHong Zhang } 1582d4002b98SHong Zhang 1583d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1584d4002b98SHong Zhang 1585d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1586d71ae5a4SJacob Faibussowitsch { 1587d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1588d4002b98SHong Zhang Mat B; 1589d4002b98SHong Zhang Mat_MPIAIJ *b; 1590d4002b98SHong Zhang 1591d4002b98SHong Zhang PetscFunctionBegin; 159228b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1593d4002b98SHong Zhang 159494a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 159594a8b381SRichard Tran Mills B = *newmat; 159694a8b381SRichard Tran Mills } else { 15979566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15989566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 15999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 16009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 16019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 16029566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 160394a8b381SRichard Tran Mills } 1604d4002b98SHong Zhang b = (Mat_MPIAIJ *)B->data; 160594a8b381SRichard Tran Mills 160694a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16079566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16089566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 160994a8b381SRichard Tran Mills } else { 16109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16119566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16129566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16139566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16149566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16159566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 16169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 16179566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 161994a8b381SRichard Tran Mills } 1620d4002b98SHong Zhang 1621d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16229566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1623d4002b98SHong Zhang } else { 1624d4002b98SHong Zhang *newmat = B; 1625d4002b98SHong Zhang } 16263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1627d4002b98SHong Zhang } 1628d4002b98SHong Zhang 1629d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1630d71ae5a4SJacob Faibussowitsch { 1631d4002b98SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1632d4002b98SHong Zhang Mat B; 1633d4002b98SHong Zhang Mat_MPISELL *b; 1634d4002b98SHong Zhang 1635d4002b98SHong Zhang PetscFunctionBegin; 163628b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1637d4002b98SHong Zhang 163894a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 163994a8b381SRichard Tran Mills B = *newmat; 164094a8b381SRichard Tran Mills } else { 16412d1451d4SHong Zhang Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)a->A->data, *Ba = (Mat_SeqAIJ *)a->B->data; 16422d1451d4SHong Zhang PetscInt i, d_nz = 0, o_nz = 0, m = A->rmap->N, n = A->cmap->N, lm = A->rmap->n, ln = A->cmap->n; 16432d1451d4SHong Zhang PetscInt *d_nnz, *o_nnz; 16442d1451d4SHong Zhang PetscCall(PetscMalloc2(lm, &d_nnz, lm, &o_nnz)); 16452d1451d4SHong Zhang for (i = 0; i < lm; i++) { 16462d1451d4SHong Zhang d_nnz[i] = Aa->i[i + 1] - Aa->i[i]; 16472d1451d4SHong Zhang o_nnz[i] = Ba->i[i + 1] - Ba->i[i]; 16482d1451d4SHong Zhang if (d_nnz[i] > d_nz) d_nz = d_nnz[i]; 16492d1451d4SHong Zhang if (o_nnz[i] > o_nz) o_nz = o_nnz[i]; 16502d1451d4SHong Zhang } 16519566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 16529566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISELL)); 16532d1451d4SHong Zhang PetscCall(MatSetSizes(B, lm, ln, m, n)); 16549566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 16552d1451d4SHong Zhang PetscCall(MatSeqSELLSetPreallocation(B, d_nz, d_nnz)); 16562d1451d4SHong Zhang PetscCall(MatMPISELLSetPreallocation(B, d_nz, d_nnz, o_nz, o_nnz)); 16572d1451d4SHong Zhang PetscCall(PetscFree2(d_nnz, o_nnz)); 165894a8b381SRichard Tran Mills } 1659d4002b98SHong Zhang b = (Mat_MPISELL *)B->data; 166094a8b381SRichard Tran Mills 166194a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16629566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 16639566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 166494a8b381SRichard Tran Mills } else { 16659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16669566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16679566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 16689566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 16699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16712d1451d4SHong Zhang PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 16722d1451d4SHong Zhang PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 167394a8b381SRichard Tran Mills } 1674d4002b98SHong Zhang 1675d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16769566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1677d4002b98SHong Zhang } else { 1678d4002b98SHong Zhang *newmat = B; 1679d4002b98SHong Zhang } 16803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1681d4002b98SHong Zhang } 1682d4002b98SHong Zhang 1683d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISELL(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1684d71ae5a4SJacob Faibussowitsch { 1685d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 1686f4259b30SLisandro Dalcin Vec bb1 = NULL; 1687d4002b98SHong Zhang 1688d4002b98SHong Zhang PetscFunctionBegin; 1689d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 16909566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 16913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1692d4002b98SHong Zhang } 1693d4002b98SHong Zhang 169448a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 1695d4002b98SHong Zhang 1696d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1697d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 16989566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1699d4002b98SHong Zhang its--; 1700d4002b98SHong Zhang } 1701d4002b98SHong Zhang 1702d4002b98SHong Zhang while (its--) { 17039566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1705d4002b98SHong Zhang 1706d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17079566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17089566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1709d4002b98SHong Zhang 1710d4002b98SHong Zhang /* local sweep */ 17119566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 1712d4002b98SHong Zhang } 1713d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1714d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1716d4002b98SHong Zhang its--; 1717d4002b98SHong Zhang } 1718d4002b98SHong Zhang while (its--) { 17199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1721d4002b98SHong Zhang 1722d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17239566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17249566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1725d4002b98SHong Zhang 1726d4002b98SHong Zhang /* local sweep */ 17279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 1728d4002b98SHong Zhang } 1729d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1730d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17319566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1732d4002b98SHong Zhang its--; 1733d4002b98SHong Zhang } 1734d4002b98SHong Zhang while (its--) { 17359566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17369566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1737d4002b98SHong Zhang 1738d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17399566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17409566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1741d4002b98SHong Zhang 1742d4002b98SHong Zhang /* local sweep */ 17439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 1744d4002b98SHong Zhang } 1745d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1746d4002b98SHong Zhang 17479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1748d4002b98SHong Zhang 1749d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 17503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1751d4002b98SHong Zhang } 1752d4002b98SHong Zhang 1753b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1754b5917f1bSHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPISELL_MPISELLCUDA(Mat, MatType, MatReuse, Mat *); 1755b5917f1bSHong Zhang #endif 1756b5917f1bSHong Zhang 1757d4002b98SHong Zhang /*MC 1758d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1759d4002b98SHong Zhang 1760d4002b98SHong Zhang Options Database Keys: 176111a5261eSBarry Smith . -mat_type mpisell - sets the matrix type to `MATMPISELL` during a call to `MatSetFromOptions()` 1762d4002b98SHong Zhang 1763d4002b98SHong Zhang Level: beginner 1764d4002b98SHong Zhang 176567be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MATSEQSELL` `MatCreateSELL()` 1766d4002b98SHong Zhang M*/ 1767d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1768d71ae5a4SJacob Faibussowitsch { 1769d4002b98SHong Zhang Mat_MPISELL *b; 1770d4002b98SHong Zhang PetscMPIInt size; 1771d4002b98SHong Zhang 1772d4002b98SHong Zhang PetscFunctionBegin; 17739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 17744dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 1775d4002b98SHong Zhang B->data = (void *)b; 1776aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 1777d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1778d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1779d4002b98SHong Zhang b->size = size; 17809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 1781d4002b98SHong Zhang /* build cache for off array entries formed */ 17829566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 1783d4002b98SHong Zhang 1784d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1785f4259b30SLisandro Dalcin b->colmap = NULL; 1786f4259b30SLisandro Dalcin b->garray = NULL; 1787d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1788d4002b98SHong Zhang 1789d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1790d4002b98SHong Zhang b->lvec = NULL; 1791d4002b98SHong Zhang b->Mvctx = NULL; 1792d4002b98SHong Zhang 1793d4002b98SHong Zhang /* stuff for MatGetRow() */ 1794f4259b30SLisandro Dalcin b->rowindices = NULL; 1795f4259b30SLisandro Dalcin b->rowvalues = NULL; 1796d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1797d4002b98SHong Zhang 17989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISELL)); 17999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISELL)); 18009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPISELL)); 18019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISELLSetPreallocation_C", MatMPISELLSetPreallocation_MPISELL)); 18029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpiaij_C", MatConvert_MPISELL_MPIAIJ)); 1803b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1804b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpisellcuda_C", MatConvert_MPISELL_MPISELLCUDA)); 1805b5917f1bSHong Zhang #endif 18069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPISELL)); 18079566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISELL)); 18083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1809d4002b98SHong Zhang } 1810