1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 1111a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 1211a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 1311a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 1820f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 2267be906fSBarry Smith .seealso: `Mat`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL` 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPISELL(Mat Y, Vec D, InsertMode is) 26d71ae5a4SJacob Faibussowitsch { 27d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A, D, is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 34d4002b98SHong Zhang } 353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43da81f932SPierre Jolivet has an order N integer array but is fast to access. 44d4002b98SHong Zhang */ 45d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d71ae5a4SJacob Faibussowitsch { 47d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 48d4002b98SHong Zhang PetscInt n = sell->B->cmap->n, i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 53eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &sell->colmap)); 54c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(sell->colmap, sell->garray[i] + 1, i + 1)); 55d4002b98SHong Zhang #else 569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &sell->colmap)); 57d4002b98SHong Zhang for (i = 0; i < n; i++) sell->colmap[sell->garray[i]] = i + 1; 58d4002b98SHong Zhang #endif 593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60d4002b98SHong Zhang } 61d4002b98SHong Zhang 62d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row, col, value, addv, orow, ocol) \ 63d4002b98SHong Zhang { \ 64d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 65d4002b98SHong Zhang else high1 = nrow1; \ 66d4002b98SHong Zhang lastcol1 = col; \ 67d4002b98SHong Zhang while (high1 - low1 > 5) { \ 68d4002b98SHong Zhang t = (low1 + high1) / 2; \ 694f8ff0b3SHong Zhang if (cp1[sliceheight * t] > col) high1 = t; \ 70d4002b98SHong Zhang else low1 = t; \ 71d4002b98SHong Zhang } \ 72d4002b98SHong Zhang for (_i = low1; _i < high1; _i++) { \ 734f8ff0b3SHong Zhang if (cp1[sliceheight * _i] > col) break; \ 744f8ff0b3SHong Zhang if (cp1[sliceheight * _i] == col) { \ 754f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp1[sliceheight * _i] += value; \ 764f8ff0b3SHong Zhang else vp1[sliceheight * _i] = value; \ 772d1451d4SHong Zhang inserted = PETSC_TRUE; \ 78d4002b98SHong Zhang goto a_noinsert; \ 79d4002b98SHong Zhang } \ 80d4002b98SHong Zhang } \ 819371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 829371c9d4SSatish Balay low1 = 0; \ 839371c9d4SSatish Balay high1 = nrow1; \ 849371c9d4SSatish Balay goto a_noinsert; \ 859371c9d4SSatish Balay } \ 869371c9d4SSatish Balay if (nonew == 1) { \ 879371c9d4SSatish Balay low1 = 0; \ 889371c9d4SSatish Balay high1 = nrow1; \ 899371c9d4SSatish Balay goto a_noinsert; \ 909371c9d4SSatish Balay } \ 9108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 9207e43b41SHong Zhang MatSeqXSELLReallocateSELL(A, am, 1, nrow1, a->sliidx, a->sliceheight, row / sliceheight, row, col, a->colidx, a->val, cp1, vp1, nonew, MatScalar); \ 93d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 94d4002b98SHong Zhang for (ii = nrow1 - 1; ii >= _i; ii--) { \ 954f8ff0b3SHong Zhang cp1[sliceheight * (ii + 1)] = cp1[sliceheight * ii]; \ 964f8ff0b3SHong Zhang vp1[sliceheight * (ii + 1)] = vp1[sliceheight * ii]; \ 97d4002b98SHong Zhang } \ 984f8ff0b3SHong Zhang cp1[sliceheight * _i] = col; \ 994f8ff0b3SHong Zhang vp1[sliceheight * _i] = value; \ 1009371c9d4SSatish Balay a->nz++; \ 1019371c9d4SSatish Balay nrow1++; \ 102d4002b98SHong Zhang a_noinsert:; \ 103d4002b98SHong Zhang a->rlen[row] = nrow1; \ 104d4002b98SHong Zhang } 105d4002b98SHong Zhang 106d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row, col, value, addv, orow, ocol) \ 107d4002b98SHong Zhang { \ 108d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 109d4002b98SHong Zhang else high2 = nrow2; \ 110d4002b98SHong Zhang lastcol2 = col; \ 111d4002b98SHong Zhang while (high2 - low2 > 5) { \ 112d4002b98SHong Zhang t = (low2 + high2) / 2; \ 1134f8ff0b3SHong Zhang if (cp2[sliceheight * t] > col) high2 = t; \ 114d4002b98SHong Zhang else low2 = t; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang for (_i = low2; _i < high2; _i++) { \ 1174f8ff0b3SHong Zhang if (cp2[sliceheight * _i] > col) break; \ 1184f8ff0b3SHong Zhang if (cp2[sliceheight * _i] == col) { \ 1194f8ff0b3SHong Zhang if (addv == ADD_VALUES) vp2[sliceheight * _i] += value; \ 1204f8ff0b3SHong Zhang else vp2[sliceheight * _i] = value; \ 1212d1451d4SHong Zhang inserted = PETSC_TRUE; \ 122d4002b98SHong Zhang goto b_noinsert; \ 123d4002b98SHong Zhang } \ 124d4002b98SHong Zhang } \ 1259371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 1269371c9d4SSatish Balay low2 = 0; \ 1279371c9d4SSatish Balay high2 = nrow2; \ 1289371c9d4SSatish Balay goto b_noinsert; \ 1299371c9d4SSatish Balay } \ 1309371c9d4SSatish Balay if (nonew == 1) { \ 1319371c9d4SSatish Balay low2 = 0; \ 1329371c9d4SSatish Balay high2 = nrow2; \ 1339371c9d4SSatish Balay goto b_noinsert; \ 1349371c9d4SSatish Balay } \ 13508401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 13607e43b41SHong Zhang MatSeqXSELLReallocateSELL(B, bm, 1, nrow2, b->sliidx, b->sliceheight, row / sliceheight, row, col, b->colidx, b->val, cp2, vp2, nonew, MatScalar); \ 137d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 138d4002b98SHong Zhang for (ii = nrow2 - 1; ii >= _i; ii--) { \ 1394f8ff0b3SHong Zhang cp2[sliceheight * (ii + 1)] = cp2[sliceheight * ii]; \ 1404f8ff0b3SHong Zhang vp2[sliceheight * (ii + 1)] = vp2[sliceheight * ii]; \ 141d4002b98SHong Zhang } \ 1424f8ff0b3SHong Zhang cp2[sliceheight * _i] = col; \ 1434f8ff0b3SHong Zhang vp2[sliceheight * _i] = value; \ 1449371c9d4SSatish Balay b->nz++; \ 1459371c9d4SSatish Balay nrow2++; \ 146d4002b98SHong Zhang b_noinsert:; \ 147d4002b98SHong Zhang b->rlen[row] = nrow2; \ 148d4002b98SHong Zhang } 149d4002b98SHong Zhang 15043b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISELL(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 151d71ae5a4SJacob Faibussowitsch { 152d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 153d4002b98SHong Zhang PetscScalar value; 154d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, shift1, shift2; 155d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 156d4002b98SHong Zhang PetscBool roworiented = sell->roworiented; 157d4002b98SHong Zhang 158d4002b98SHong Zhang /* Some Variables required in the macro */ 159d4002b98SHong Zhang Mat A = sell->A; 160d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 161d4002b98SHong Zhang PetscBool ignorezeroentries = a->ignorezeroentries, found; 162d4002b98SHong Zhang Mat B = sell->B; 163d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 16407e43b41SHong Zhang PetscInt *cp1, *cp2, ii, _i, nrow1, nrow2, low1, high1, low2, high2, t, lastcol1, lastcol2, sliceheight = a->sliceheight; 165d4002b98SHong Zhang MatScalar *vp1, *vp2; 166d4002b98SHong Zhang 167d4002b98SHong Zhang PetscFunctionBegin; 168d4002b98SHong Zhang for (i = 0; i < m; i++) { 169d4002b98SHong Zhang if (im[i] < 0) continue; 1706bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 171d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 172d4002b98SHong Zhang row = im[i] - rstart; 173d4002b98SHong Zhang lastcol1 = -1; 17407e43b41SHong Zhang shift1 = a->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 1758e3a54c0SPierre Jolivet cp1 = PetscSafePointerPlusOffset(a->colidx, shift1); 1768e3a54c0SPierre Jolivet vp1 = PetscSafePointerPlusOffset(a->val, shift1); 177d4002b98SHong Zhang nrow1 = a->rlen[row]; 178d4002b98SHong Zhang low1 = 0; 179d4002b98SHong Zhang high1 = nrow1; 180d4002b98SHong Zhang lastcol2 = -1; 18107e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 1828e3a54c0SPierre Jolivet cp2 = PetscSafePointerPlusOffset(b->colidx, shift2); 1838e3a54c0SPierre Jolivet vp2 = PetscSafePointerPlusOffset(b->val, shift2); 184d4002b98SHong Zhang nrow2 = b->rlen[row]; 185d4002b98SHong Zhang low2 = 0; 186d4002b98SHong Zhang high2 = nrow2; 187d4002b98SHong Zhang 188d4002b98SHong Zhang for (j = 0; j < n; j++) { 189d4002b98SHong Zhang if (roworiented) value = v[i * n + j]; 190d4002b98SHong Zhang else value = v[i + j * m]; 191d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 192d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 193d4002b98SHong Zhang col = in[j] - cstart; 194d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A, row, col, value, addv, im[i], in[j], cp1, vp1, lastcol1, low1, high1); /* set one value */ 1952d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 1962d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) A->offloadmask = PETSC_OFFLOAD_CPU; 1972d1451d4SHong Zhang #endif 198f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 199f7d195e4SLawrence Mitchell continue; 200f7d195e4SLawrence Mitchell } else { 201f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 202d4002b98SHong Zhang if (mat->was_assembled) { 20348a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 204d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 205eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, in[j] + 1, 0, &col)); 206d4002b98SHong Zhang col--; 207d4002b98SHong Zhang #else 208d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 209d4002b98SHong Zhang #endif 210f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSELL *)sell->B->data)->nonew) { 2119566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 212d4002b98SHong Zhang col = in[j]; 213d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 214d4002b98SHong Zhang B = sell->B; 215d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 21607e43b41SHong Zhang shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */ 217d4002b98SHong Zhang cp2 = b->colidx + shift2; 218d4002b98SHong Zhang vp2 = b->val + shift2; 219d4002b98SHong Zhang nrow2 = b->rlen[row]; 220d4002b98SHong Zhang low2 = 0; 221d4002b98SHong Zhang high2 = nrow2; 2222d1451d4SHong Zhang found = PETSC_FALSE; 223f7d195e4SLawrence Mitchell } else { 224f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 225f7d195e4SLawrence Mitchell } 226d4002b98SHong Zhang } else col = in[j]; 227d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B, row, col, value, addv, im[i], in[j], cp2, vp2, lastcol2, low2, high2); /* set one value */ 2282d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 2292d1451d4SHong Zhang if (B->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) B->offloadmask = PETSC_OFFLOAD_CPU; 2302d1451d4SHong Zhang #endif 231d4002b98SHong Zhang } 232d4002b98SHong Zhang } 233d4002b98SHong Zhang } else { 23428b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 235d4002b98SHong Zhang if (!sell->donotstash) { 236d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 237d4002b98SHong Zhang if (roworiented) { 2389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 239d4002b98SHong Zhang } else { 2409566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 241d4002b98SHong Zhang } 242d4002b98SHong Zhang } 243d4002b98SHong Zhang } 244d4002b98SHong Zhang } 2453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 246d4002b98SHong Zhang } 247d4002b98SHong Zhang 248ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISELL(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 249d71ae5a4SJacob Faibussowitsch { 250d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 251d4002b98SHong Zhang PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 252d4002b98SHong Zhang PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 253d4002b98SHong Zhang 254d4002b98SHong Zhang PetscFunctionBegin; 255d4002b98SHong Zhang for (i = 0; i < m; i++) { 25654c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 25754c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 258966bd95aSPierre Jolivet PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 259d4002b98SHong Zhang row = idxm[i] - rstart; 260d4002b98SHong Zhang for (j = 0; j < n; j++) { 26154c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 26254c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 263d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 264d4002b98SHong Zhang col = idxn[j] - cstart; 2659566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A, 1, &row, 1, &col, v + i * n + j)); 266d4002b98SHong Zhang } else { 26748a46eb9SPierre Jolivet if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat)); 268d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 269eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(sell->colmap, idxn[j] + 1, 0, &col)); 270d4002b98SHong Zhang col--; 271d4002b98SHong Zhang #else 272d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 273d4002b98SHong Zhang #endif 274966bd95aSPierre Jolivet if (col < 0 || sell->garray[col] != idxn[j]) *(v + i * n + j) = 0.0; 27548a46eb9SPierre Jolivet else PetscCall(MatGetValues(sell->B, 1, &row, 1, &col, v + i * n + j)); 276d4002b98SHong Zhang } 277d4002b98SHong Zhang } 278d4002b98SHong Zhang } 2793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280d4002b98SHong Zhang } 281d4002b98SHong Zhang 282ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat, MatAssemblyType mode) 283d71ae5a4SJacob Faibussowitsch { 284d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 285d4002b98SHong Zhang PetscInt nstash, reallocs; 286d4002b98SHong Zhang 287d4002b98SHong Zhang PetscFunctionBegin; 2883ba16761SJacob Faibussowitsch if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 289d4002b98SHong Zhang 2909566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 2919566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 2929566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 2933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 294d4002b98SHong Zhang } 295d4002b98SHong Zhang 296d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat, MatAssemblyType mode) 297d71ae5a4SJacob Faibussowitsch { 298d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 299d4002b98SHong Zhang PetscMPIInt n; 300d4002b98SHong Zhang PetscInt i, flg; 301d4002b98SHong Zhang PetscInt *row, *col; 302d4002b98SHong Zhang PetscScalar *val; 303c0edf612SJunchao Zhang PetscBool all_assembled; 304d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 305d4002b98SHong Zhang PetscFunctionBegin; 306d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 307d4002b98SHong Zhang while (1) { 3089566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 309d4002b98SHong Zhang if (!flg) break; 310d4002b98SHong Zhang 311d4002b98SHong Zhang for (i = 0; i < n; i++) { /* assemble one by one */ 3129566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat, 1, row + i, 1, col + i, val + i, mat->insertmode)); 313d4002b98SHong Zhang } 314d4002b98SHong Zhang } 3159566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 316d4002b98SHong Zhang } 3172d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3182d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) sell->A->offloadmask = PETSC_OFFLOAD_CPU; 3192d1451d4SHong Zhang #endif 3209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A, mode)); 3219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A, mode)); 322d4002b98SHong Zhang 323d4002b98SHong Zhang /* 324b638e6b4SJunchao Zhang determine if any process has disassembled, if so we must 3256aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. 326d4002b98SHong Zhang */ 327d4002b98SHong Zhang /* 328d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 329b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 330d4002b98SHong Zhang */ 331d4002b98SHong Zhang if (!((Mat_SeqSELL *)sell->B->data)->nonew) { 3325440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 333c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISELL(mat)); 334d4002b98SHong Zhang } 33548a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISELL(mat)); 3362d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3372d1451d4SHong Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && sell->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) sell->B->offloadmask = PETSC_OFFLOAD_CPU; 3382d1451d4SHong Zhang #endif 3399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B, mode)); 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B, mode)); 3419566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 342f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 344d4002b98SHong Zhang 345d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 346f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL *)sell->A->data)->nonew) { 347d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 348462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 349d4002b98SHong Zhang } 3502d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 3512d1451d4SHong Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 3522d1451d4SHong Zhang #endif 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354d4002b98SHong Zhang } 355d4002b98SHong Zhang 356ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISELL(Mat A) 357d71ae5a4SJacob Faibussowitsch { 358d4002b98SHong Zhang Mat_MPISELL *l = (Mat_MPISELL *)A->data; 359d4002b98SHong Zhang 360d4002b98SHong Zhang PetscFunctionBegin; 3619566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3629566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 3633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 364d4002b98SHong Zhang } 365d4002b98SHong Zhang 366ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPISELL(Mat A, Vec xx, Vec yy) 367d71ae5a4SJacob Faibussowitsch { 368d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 369d4002b98SHong Zhang PetscInt nt; 370d4002b98SHong Zhang 371d4002b98SHong Zhang PetscFunctionBegin; 3729566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 37308401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 3749566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3759566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 3769566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379d4002b98SHong Zhang } 380d4002b98SHong Zhang 381fa078d78SJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A, Vec bb, Vec xx) 382d71ae5a4SJacob Faibussowitsch { 383d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 384d4002b98SHong Zhang 385d4002b98SHong Zhang PetscFunctionBegin; 3869566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 3873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 388d4002b98SHong Zhang } 389d4002b98SHong Zhang 390ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 391d71ae5a4SJacob Faibussowitsch { 392d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 393d4002b98SHong Zhang 394d4002b98SHong Zhang PetscFunctionBegin; 3959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3969566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 3979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 3989566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 400d4002b98SHong Zhang } 401d4002b98SHong Zhang 402ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPISELL(Mat A, Vec xx, Vec yy) 403d71ae5a4SJacob Faibussowitsch { 404d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 405d4002b98SHong Zhang 406d4002b98SHong Zhang PetscFunctionBegin; 407d4002b98SHong Zhang /* do nondiagonal part */ 4089566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 409d4002b98SHong Zhang /* do local part */ 4109566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 411a29b4eb7SJunchao Zhang /* add partial results together */ 4129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 4143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 415d4002b98SHong Zhang } 416d4002b98SHong Zhang 417ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPISELL(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 418d71ae5a4SJacob Faibussowitsch { 419d4002b98SHong Zhang MPI_Comm comm; 420d4002b98SHong Zhang Mat_MPISELL *Asell = (Mat_MPISELL *)Amat->data, *Bsell; 421d4002b98SHong Zhang Mat Adia = Asell->A, Bdia, Aoff, Boff, *Aoffs, *Boffs; 422d4002b98SHong Zhang IS Me, Notme; 423d4002b98SHong Zhang PetscInt M, N, first, last, *notme, i; 424d4002b98SHong Zhang PetscMPIInt size; 425d4002b98SHong Zhang 426d4002b98SHong Zhang PetscFunctionBegin; 427d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 4289371c9d4SSatish Balay Bsell = (Mat_MPISELL *)Bmat->data; 4299371c9d4SSatish Balay Bdia = Bsell->A; 4309566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, f)); 4313ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 4329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 4339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4343ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 435d4002b98SHong Zhang 436d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4379566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 4389566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 4399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 440d4002b98SHong Zhang for (i = 0; i < first; i++) notme[i] = i; 441d4002b98SHong Zhang for (i = last; i < M; i++) notme[i - last + first] = i; 4429566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 4439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 4449566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 445d4002b98SHong Zhang Aoff = Aoffs[0]; 4469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 447d4002b98SHong Zhang Boff = Boffs[0]; 4489566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 4499566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 4509566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 4519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4539566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 4543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 455d4002b98SHong Zhang } 456d4002b98SHong Zhang 457ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz) 458d71ae5a4SJacob Faibussowitsch { 459d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 460d4002b98SHong Zhang 461d4002b98SHong Zhang PetscFunctionBegin; 462d4002b98SHong Zhang /* do nondiagonal part */ 4639566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 464d4002b98SHong Zhang /* do local part */ 4659566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 466e4a140f6SJunchao Zhang /* add partial results together */ 4679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4689566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 4693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470d4002b98SHong Zhang } 471d4002b98SHong Zhang 472d4002b98SHong Zhang /* 473d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 474d4002b98SHong Zhang diagonal block 475d4002b98SHong Zhang */ 476ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISELL(Mat A, Vec v) 477d71ae5a4SJacob Faibussowitsch { 478d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 479d4002b98SHong Zhang 480d4002b98SHong Zhang PetscFunctionBegin; 48108401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 482aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 4839566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 4843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 485d4002b98SHong Zhang } 486d4002b98SHong Zhang 487ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPISELL(Mat A, PetscScalar aa) 488d71ae5a4SJacob Faibussowitsch { 489d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 490d4002b98SHong Zhang 491d4002b98SHong Zhang PetscFunctionBegin; 4929566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 4939566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 4943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 495d4002b98SHong Zhang } 496d4002b98SHong Zhang 497d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPISELL(Mat mat) 498d71ae5a4SJacob Faibussowitsch { 499d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 500d4002b98SHong Zhang 501d4002b98SHong Zhang PetscFunctionBegin; 5023ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5039566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 5049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 5059566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 5069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 507d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 508eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&sell->colmap)); 509d4002b98SHong Zhang #else 5109566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 511d4002b98SHong Zhang #endif 5129566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 5139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 5149566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 5159566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues, sell->rowindices)); 5169566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 5179566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 518d4002b98SHong Zhang 5199566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 5219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 5239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISELLSetPreallocation_C", NULL)); 5249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpiaij_C", NULL)); 525b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 526b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpisellcuda_C", NULL)); 527b5917f1bSHong Zhang #endif 5289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 5293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 530d4002b98SHong Zhang } 531d4002b98SHong Zhang 532d4002b98SHong Zhang #include <petscdraw.h> 533ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 534d71ae5a4SJacob Faibussowitsch { 535d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 536d4002b98SHong Zhang PetscMPIInt rank = sell->rank, size = sell->size; 5379f196a02SMartin Diehl PetscBool isdraw, isascii, isbinary; 538d4002b98SHong Zhang PetscViewer sviewer; 539d4002b98SHong Zhang PetscViewerFormat format; 540d4002b98SHong Zhang 541d4002b98SHong Zhang PetscFunctionBegin; 5429566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 5439f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 5449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 5459f196a02SMartin Diehl if (isascii) { 5469566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 547d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 548d4002b98SHong Zhang MatInfo info; 5496335e310SSatish Balay PetscInt *inodes; 550d4002b98SHong Zhang 5519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 5529566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 5539566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, NULL, &inodes, NULL)); 5549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 555d4002b98SHong Zhang if (!inodes) { 5569371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5579371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 558d4002b98SHong Zhang } else { 5599371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, 5609371c9d4SSatish Balay (PetscInt)info.nz_allocated, (PetscInt)info.memory)); 561d4002b98SHong Zhang } 5629566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A, MAT_LOCAL, &info)); 5639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5649566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B, MAT_LOCAL, &info)); 5659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 5669566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 5699566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx, viewer)); 5703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 571d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 572d4002b98SHong Zhang PetscInt inodecount, inodelimit, *inodes; 5739566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A, &inodecount, &inodes, &inodelimit)); 574d4002b98SHong Zhang if (inodes) { 5759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 576d4002b98SHong Zhang } else { 5779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 578d4002b98SHong Zhang } 5793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 5813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 582d4002b98SHong Zhang } 583d4002b98SHong Zhang } else if (isbinary) { 584d4002b98SHong Zhang if (size == 1) { 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A, ((PetscObject)mat)->name)); 5869566063dSJacob Faibussowitsch PetscCall(MatView(sell->A, viewer)); 587d4002b98SHong Zhang } else { 5889566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 589d4002b98SHong Zhang } 5903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 591d4002b98SHong Zhang } else if (isdraw) { 592d4002b98SHong Zhang PetscDraw draw; 593d4002b98SHong Zhang PetscBool isnull; 5949566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 5959566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 5963ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 597d4002b98SHong Zhang } 598d4002b98SHong Zhang 599d4002b98SHong Zhang { 600d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 601d4002b98SHong Zhang Mat A; 602d4002b98SHong Zhang Mat_SeqSELL *Aloc; 603d4002b98SHong Zhang PetscInt M = mat->rmap->N, N = mat->cmap->N, *acolidx, row, col, i, j; 604d4002b98SHong Zhang MatScalar *aval; 605d4002b98SHong Zhang PetscBool isnonzero; 606d4002b98SHong Zhang 6079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 608dd400576SPatrick Sanan if (rank == 0) { 6099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 610d4002b98SHong Zhang } else { 6119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 612d4002b98SHong Zhang } 613d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 6149566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISELL)); 6159566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, 0, NULL, 0, NULL)); 6169566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 617d4002b98SHong Zhang 618d4002b98SHong Zhang /* copy over the A part */ 619d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->A->data; 6209371c9d4SSatish Balay acolidx = Aloc->colidx; 6219371c9d4SSatish Balay aval = Aloc->val; 622d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { /* loop over slices */ 623d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 62407e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 625d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 62607e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 627d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6289566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 629d4002b98SHong Zhang } 6309371c9d4SSatish Balay aval++; 6319371c9d4SSatish Balay acolidx++; 632d4002b98SHong Zhang } 633d4002b98SHong Zhang } 634d4002b98SHong Zhang 635d4002b98SHong Zhang /* copy over the B part */ 636d4002b98SHong Zhang Aloc = (Mat_SeqSELL *)sell->B->data; 6379371c9d4SSatish Balay acolidx = Aloc->colidx; 6389371c9d4SSatish Balay aval = Aloc->val; 639d4002b98SHong Zhang for (i = 0; i < Aloc->totalslices; i++) { 640d4002b98SHong Zhang for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) { 64107e43b41SHong Zhang isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]); 642d4002b98SHong Zhang if (isnonzero) { 64307e43b41SHong Zhang row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart; 644d4002b98SHong Zhang col = sell->garray[*acolidx]; 6459566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES)); 646d4002b98SHong Zhang } 6479371c9d4SSatish Balay aval++; 6489371c9d4SSatish Balay acolidx++; 649d4002b98SHong Zhang } 650d4002b98SHong Zhang } 651d4002b98SHong Zhang 6529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 6539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 654d4002b98SHong Zhang /* 655d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 656d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 657d4002b98SHong Zhang */ 6589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 659dd400576SPatrick Sanan if (rank == 0) { 660f4f49eeaSPierre Jolivet PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL *)A->data)->A, ((PetscObject)mat)->name)); 661f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSELL(((Mat_MPISELL *)A->data)->A, sviewer)); 662d4002b98SHong Zhang } 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 6649566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 665d4002b98SHong Zhang } 6663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 667d4002b98SHong Zhang } 668d4002b98SHong Zhang 669ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL(Mat mat, PetscViewer viewer) 670d71ae5a4SJacob Faibussowitsch { 6719f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 672d4002b98SHong Zhang 673d4002b98SHong Zhang PetscFunctionBegin; 6749f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 6759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 6769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 6779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 6789f196a02SMartin Diehl if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat, viewer)); 6793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 680d4002b98SHong Zhang } 681d4002b98SHong Zhang 682ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPISELL(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 683d71ae5a4SJacob Faibussowitsch { 684d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 685d4002b98SHong Zhang 686d4002b98SHong Zhang PetscFunctionBegin; 6879566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B, NULL, nghosts)); 688d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 6893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 690d4002b98SHong Zhang } 691d4002b98SHong Zhang 692ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISELL(Mat matin, MatInfoType flag, MatInfo *info) 693d71ae5a4SJacob Faibussowitsch { 694d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 695d4002b98SHong Zhang Mat A = mat->A, B = mat->B; 6963966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 697d4002b98SHong Zhang 698d4002b98SHong Zhang PetscFunctionBegin; 699d4002b98SHong Zhang info->block_size = 1.0; 7009566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 701d4002b98SHong Zhang 7029371c9d4SSatish Balay isend[0] = info->nz_used; 7039371c9d4SSatish Balay isend[1] = info->nz_allocated; 7049371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7059371c9d4SSatish Balay isend[3] = info->memory; 7069371c9d4SSatish Balay isend[4] = info->mallocs; 707d4002b98SHong Zhang 7089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 709d4002b98SHong Zhang 7109371c9d4SSatish Balay isend[0] += info->nz_used; 7119371c9d4SSatish Balay isend[1] += info->nz_allocated; 7129371c9d4SSatish Balay isend[2] += info->nz_unneeded; 7139371c9d4SSatish Balay isend[3] += info->memory; 7149371c9d4SSatish Balay isend[4] += info->mallocs; 715d4002b98SHong Zhang if (flag == MAT_LOCAL) { 716d4002b98SHong Zhang info->nz_used = isend[0]; 717d4002b98SHong Zhang info->nz_allocated = isend[1]; 718d4002b98SHong Zhang info->nz_unneeded = isend[2]; 719d4002b98SHong Zhang info->memory = isend[3]; 720d4002b98SHong Zhang info->mallocs = isend[4]; 721d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 722462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 723d4002b98SHong Zhang 724d4002b98SHong Zhang info->nz_used = irecv[0]; 725d4002b98SHong Zhang info->nz_allocated = irecv[1]; 726d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 727d4002b98SHong Zhang info->memory = irecv[3]; 728d4002b98SHong Zhang info->mallocs = irecv[4]; 729d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 730462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 731d4002b98SHong Zhang 732d4002b98SHong Zhang info->nz_used = irecv[0]; 733d4002b98SHong Zhang info->nz_allocated = irecv[1]; 734d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 735d4002b98SHong Zhang info->memory = irecv[3]; 736d4002b98SHong Zhang info->mallocs = irecv[4]; 737d4002b98SHong Zhang } 738d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 739d4002b98SHong Zhang info->fill_ratio_needed = 0; 740d4002b98SHong Zhang info->factor_mallocs = 0; 7413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 742d4002b98SHong Zhang } 743d4002b98SHong Zhang 74443b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISELL(Mat A, MatOption op, PetscBool flg) 745d71ae5a4SJacob Faibussowitsch { 746d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 747d4002b98SHong Zhang 748d4002b98SHong Zhang PetscFunctionBegin; 749d4002b98SHong Zhang switch (op) { 750d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 751d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 752d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 753d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 754d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 755d4002b98SHong Zhang case MAT_USE_INODES: 756d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 757d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7589566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7599566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 760d4002b98SHong Zhang break; 761d4002b98SHong Zhang case MAT_ROW_ORIENTED: 762d4002b98SHong Zhang MatCheckPreallocated(A, 1); 763d4002b98SHong Zhang a->roworiented = flg; 764d4002b98SHong Zhang 7659566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 7669566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 767d4002b98SHong Zhang break; 768d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 769d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 770d71ae5a4SJacob Faibussowitsch break; 771d4002b98SHong Zhang case MAT_SYMMETRIC: 772d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7739566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 774d4002b98SHong Zhang break; 775d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 776d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 778d4002b98SHong Zhang break; 779d4002b98SHong Zhang case MAT_HERMITIAN: 780d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 782d4002b98SHong Zhang break; 783d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 784d4002b98SHong Zhang MatCheckPreallocated(A, 1); 7859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 786d4002b98SHong Zhang break; 787b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 788b94d7dedSBarry Smith MatCheckPreallocated(A, 1); 789b94d7dedSBarry Smith PetscCall(MatSetOption(a->A, op, flg)); 790b94d7dedSBarry Smith break; 791d71ae5a4SJacob Faibussowitsch default: 792888c827cSStefano Zampini break; 793d4002b98SHong Zhang } 7943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 795d4002b98SHong Zhang } 796d4002b98SHong Zhang 797ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISELL(Mat mat, Vec ll, Vec rr) 798d71ae5a4SJacob Faibussowitsch { 799d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 800d4002b98SHong Zhang Mat a = sell->A, b = sell->B; 801d4002b98SHong Zhang PetscInt s1, s2, s3; 802d4002b98SHong Zhang 803d4002b98SHong Zhang PetscFunctionBegin; 8049566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 805d4002b98SHong Zhang if (rr) { 8069566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 80708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 808d4002b98SHong Zhang /* Overlap communication with computation. */ 8099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 810d4002b98SHong Zhang } 811d4002b98SHong Zhang if (ll) { 8129566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 81308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 814dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 815d4002b98SHong Zhang } 816d4002b98SHong Zhang /* scale the diagonal block */ 817dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 818d4002b98SHong Zhang 819d4002b98SHong Zhang if (rr) { 820d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD)); 822dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, sell->lvec); 823d4002b98SHong Zhang } 8243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 825d4002b98SHong Zhang } 826d4002b98SHong Zhang 827ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 828d71ae5a4SJacob Faibussowitsch { 829d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 830d4002b98SHong Zhang 831d4002b98SHong Zhang PetscFunctionBegin; 8329566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 8333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 834d4002b98SHong Zhang } 835d4002b98SHong Zhang 836ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISELL(Mat A, Mat B, PetscBool *flag) 837d71ae5a4SJacob Faibussowitsch { 838d4002b98SHong Zhang Mat_MPISELL *matB = (Mat_MPISELL *)B->data, *matA = (Mat_MPISELL *)A->data; 839d4002b98SHong Zhang Mat a, b, c, d; 840d4002b98SHong Zhang PetscBool flg; 841d4002b98SHong Zhang 842d4002b98SHong Zhang PetscFunctionBegin; 8439371c9d4SSatish Balay a = matA->A; 8449371c9d4SSatish Balay b = matA->B; 8459371c9d4SSatish Balay c = matB->A; 8469371c9d4SSatish Balay d = matB->B; 847d4002b98SHong Zhang 8489566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 84948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 8505440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 8513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 852d4002b98SHong Zhang } 853d4002b98SHong Zhang 854ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISELL(Mat A, Mat B, MatStructure str) 855d71ae5a4SJacob Faibussowitsch { 856d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 857d4002b98SHong Zhang Mat_MPISELL *b = (Mat_MPISELL *)B->data; 858d4002b98SHong Zhang 859d4002b98SHong Zhang PetscFunctionBegin; 860d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 861d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 862d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 863d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 864d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 865d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 866d4002b98SHong Zhang then copying the submatrices */ 8679566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 868d4002b98SHong Zhang } else { 8699566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 8709566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 871d4002b98SHong Zhang } 8723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 873d4002b98SHong Zhang } 874d4002b98SHong Zhang 875ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPISELL(Mat A) 876d71ae5a4SJacob Faibussowitsch { 877d4002b98SHong Zhang PetscFunctionBegin; 8789566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 8793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 880d4002b98SHong Zhang } 881d4002b98SHong Zhang 882ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISELL(Mat mat) 883d71ae5a4SJacob Faibussowitsch { 8845f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8855f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 886d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 887d4002b98SHong Zhang 8889566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8899566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8905f80ce2aSJacob Faibussowitsch } 8913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 892d4002b98SHong Zhang } 893d4002b98SHong Zhang 894ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A, const PetscScalar **values) 895d71ae5a4SJacob Faibussowitsch { 896d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 897d4002b98SHong Zhang 898d4002b98SHong Zhang PetscFunctionBegin; 8999566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 900d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 9013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 902d4002b98SHong Zhang } 903d4002b98SHong Zhang 904d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPISELL(Mat x, PetscRandom rctx) 905d71ae5a4SJacob Faibussowitsch { 906d4002b98SHong Zhang Mat_MPISELL *sell = (Mat_MPISELL *)x->data; 907d4002b98SHong Zhang 908d4002b98SHong Zhang PetscFunctionBegin; 9099566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A, rctx)); 9109566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B, rctx)); 9119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 9129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 9133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 914d4002b98SHong Zhang } 915d4002b98SHong Zhang 916ce78bad3SBarry Smith static PetscErrorCode MatSetFromOptions_MPISELL(Mat A, PetscOptionItems PetscOptionsObject) 917d71ae5a4SJacob Faibussowitsch { 918d4002b98SHong Zhang PetscFunctionBegin; 919d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPISELL options"); 920d0609cedSBarry Smith PetscOptionsHeadEnd(); 9213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 922d4002b98SHong Zhang } 923d4002b98SHong Zhang 924ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPISELL(Mat Y, PetscScalar a) 925d71ae5a4SJacob Faibussowitsch { 926d4002b98SHong Zhang Mat_MPISELL *msell = (Mat_MPISELL *)Y->data; 927d4002b98SHong Zhang Mat_SeqSELL *sell = (Mat_SeqSELL *)msell->A->data; 928d4002b98SHong Zhang 929d4002b98SHong Zhang PetscFunctionBegin; 930d4002b98SHong Zhang if (!Y->preallocated) { 9319566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y, 1, NULL, 0, NULL)); 932d4002b98SHong Zhang } else if (!sell->nz) { 933d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9349566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A, 1, NULL)); 935d4002b98SHong Zhang sell->nonew = nonew; 936d4002b98SHong Zhang } 9379566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 9383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 939d4002b98SHong Zhang } 940d4002b98SHong Zhang 941ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISELL(Mat A, PetscBool *missing, PetscInt *d) 942d71ae5a4SJacob Faibussowitsch { 943d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 944d4002b98SHong Zhang 945d4002b98SHong Zhang PetscFunctionBegin; 94608401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 9479566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 948d4002b98SHong Zhang if (d) { 949d4002b98SHong Zhang PetscInt rstart; 9509566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 951d4002b98SHong Zhang *d += rstart; 952d4002b98SHong Zhang } 9533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 954d4002b98SHong Zhang } 955d4002b98SHong Zhang 956ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A, Mat *a) 957d71ae5a4SJacob Faibussowitsch { 958d4002b98SHong Zhang PetscFunctionBegin; 959d4002b98SHong Zhang *a = ((Mat_MPISELL *)A->data)->A; 9603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 961d4002b98SHong Zhang } 962d4002b98SHong Zhang 96343b34f9dSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISELL(Mat mat) 96443b34f9dSJacob Faibussowitsch { 96543b34f9dSJacob Faibussowitsch Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 96643b34f9dSJacob Faibussowitsch 96743b34f9dSJacob Faibussowitsch PetscFunctionBegin; 96843b34f9dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 96943b34f9dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 97043b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 97143b34f9dSJacob Faibussowitsch } 97243b34f9dSJacob Faibussowitsch 97343b34f9dSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 97443b34f9dSJacob Faibussowitsch { 97543b34f9dSJacob Faibussowitsch Mat_MPISELL *sell = (Mat_MPISELL *)mat->data; 97643b34f9dSJacob Faibussowitsch 97743b34f9dSJacob Faibussowitsch PetscFunctionBegin; 97843b34f9dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 97943b34f9dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 98043b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 98143b34f9dSJacob Faibussowitsch } 98243b34f9dSJacob Faibussowitsch 98343b34f9dSJacob Faibussowitsch static PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[]) 98443b34f9dSJacob Faibussowitsch { 98543b34f9dSJacob Faibussowitsch Mat_MPISELL *b; 98643b34f9dSJacob Faibussowitsch 98743b34f9dSJacob Faibussowitsch PetscFunctionBegin; 98843b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 98943b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 99043b34f9dSJacob Faibussowitsch b = (Mat_MPISELL *)B->data; 99143b34f9dSJacob Faibussowitsch 99243b34f9dSJacob Faibussowitsch if (!B->preallocated) { 99343b34f9dSJacob Faibussowitsch /* Explicitly create 2 MATSEQSELL matrices. */ 99443b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 99543b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 99643b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 99743b34f9dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSELL)); 99843b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 99943b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, B->cmap->N, B->rmap->n, B->cmap->N)); 100043b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 100143b34f9dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQSELL)); 100243b34f9dSJacob Faibussowitsch } 100343b34f9dSJacob Faibussowitsch 100443b34f9dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A, d_rlenmax, d_rlen)); 100543b34f9dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B, o_rlenmax, o_rlen)); 100643b34f9dSJacob Faibussowitsch B->preallocated = PETSC_TRUE; 100743b34f9dSJacob Faibussowitsch B->was_assembled = PETSC_FALSE; 100843b34f9dSJacob Faibussowitsch /* 100943b34f9dSJacob Faibussowitsch critical for MatAssemblyEnd to work. 101043b34f9dSJacob Faibussowitsch MatAssemblyBegin checks it to set up was_assembled 101143b34f9dSJacob Faibussowitsch and MatAssemblyEnd checks was_assembled to determine whether to build garray 101243b34f9dSJacob Faibussowitsch */ 101343b34f9dSJacob Faibussowitsch B->assembled = PETSC_FALSE; 101443b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 101543b34f9dSJacob Faibussowitsch } 101643b34f9dSJacob Faibussowitsch 101743b34f9dSJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISELL(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 101843b34f9dSJacob Faibussowitsch { 101943b34f9dSJacob Faibussowitsch Mat mat; 102043b34f9dSJacob Faibussowitsch Mat_MPISELL *a, *oldmat = (Mat_MPISELL *)matin->data; 102143b34f9dSJacob Faibussowitsch 102243b34f9dSJacob Faibussowitsch PetscFunctionBegin; 102343b34f9dSJacob Faibussowitsch *newmat = NULL; 102443b34f9dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 102543b34f9dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 102643b34f9dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 102743b34f9dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 102843b34f9dSJacob Faibussowitsch a = (Mat_MPISELL *)mat->data; 102943b34f9dSJacob Faibussowitsch 103043b34f9dSJacob Faibussowitsch mat->factortype = matin->factortype; 103143b34f9dSJacob Faibussowitsch mat->assembled = PETSC_TRUE; 103243b34f9dSJacob Faibussowitsch mat->insertmode = NOT_SET_VALUES; 103343b34f9dSJacob Faibussowitsch mat->preallocated = PETSC_TRUE; 103443b34f9dSJacob Faibussowitsch 103543b34f9dSJacob Faibussowitsch a->size = oldmat->size; 103643b34f9dSJacob Faibussowitsch a->rank = oldmat->rank; 103743b34f9dSJacob Faibussowitsch a->donotstash = oldmat->donotstash; 103843b34f9dSJacob Faibussowitsch a->roworiented = oldmat->roworiented; 103943b34f9dSJacob Faibussowitsch a->rowindices = NULL; 104043b34f9dSJacob Faibussowitsch a->rowvalues = NULL; 104143b34f9dSJacob Faibussowitsch a->getrowactive = PETSC_FALSE; 104243b34f9dSJacob Faibussowitsch 104343b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 104443b34f9dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 104543b34f9dSJacob Faibussowitsch 104643b34f9dSJacob Faibussowitsch if (oldmat->colmap) { 104743b34f9dSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 104843b34f9dSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 104943b34f9dSJacob Faibussowitsch #else 105043b34f9dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 105143b34f9dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 105243b34f9dSJacob Faibussowitsch #endif 105343b34f9dSJacob Faibussowitsch } else a->colmap = NULL; 105443b34f9dSJacob Faibussowitsch if (oldmat->garray) { 105543b34f9dSJacob Faibussowitsch PetscInt len; 105643b34f9dSJacob Faibussowitsch len = oldmat->B->cmap->n; 105743b34f9dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 105843b34f9dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 105943b34f9dSJacob Faibussowitsch } else a->garray = NULL; 106043b34f9dSJacob Faibussowitsch 106143b34f9dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 106243b34f9dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 106343b34f9dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 106443b34f9dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 106543b34f9dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 106643b34f9dSJacob Faibussowitsch *newmat = mat; 106743b34f9dSJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106843b34f9dSJacob Faibussowitsch } 106943b34f9dSJacob Faibussowitsch 107043b34f9dSJacob Faibussowitsch static const struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 1071f4259b30SLisandro Dalcin NULL, 1072f4259b30SLisandro Dalcin NULL, 1073d4002b98SHong Zhang MatMult_MPISELL, 1074d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 1075d4002b98SHong Zhang MatMultTranspose_MPISELL, 1076d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 1077f4259b30SLisandro Dalcin NULL, 1078f4259b30SLisandro Dalcin NULL, 1079f4259b30SLisandro Dalcin NULL, 1080f4259b30SLisandro Dalcin /*10*/ NULL, 1081f4259b30SLisandro Dalcin NULL, 1082f4259b30SLisandro Dalcin NULL, 1083d4002b98SHong Zhang MatSOR_MPISELL, 1084f4259b30SLisandro Dalcin NULL, 1085d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 1086d4002b98SHong Zhang MatEqual_MPISELL, 1087d4002b98SHong Zhang MatGetDiagonal_MPISELL, 1088d4002b98SHong Zhang MatDiagonalScale_MPISELL, 1089f4259b30SLisandro Dalcin NULL, 1090d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 1091d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 1092d4002b98SHong Zhang MatSetOption_MPISELL, 1093d4002b98SHong Zhang MatZeroEntries_MPISELL, 1094f4259b30SLisandro Dalcin /*24*/ NULL, 1095f4259b30SLisandro Dalcin NULL, 1096f4259b30SLisandro Dalcin NULL, 1097f4259b30SLisandro Dalcin NULL, 1098f4259b30SLisandro Dalcin NULL, 1099d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 1100f4259b30SLisandro Dalcin NULL, 1101f4259b30SLisandro Dalcin NULL, 1102d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1103f4259b30SLisandro Dalcin NULL, 1104d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin NULL, 1107f4259b30SLisandro Dalcin NULL, 1108f4259b30SLisandro Dalcin NULL, 1109f4259b30SLisandro Dalcin /*39*/ NULL, 1110f4259b30SLisandro Dalcin NULL, 1111f4259b30SLisandro Dalcin NULL, 1112d4002b98SHong Zhang MatGetValues_MPISELL, 1113d4002b98SHong Zhang MatCopy_MPISELL, 1114f4259b30SLisandro Dalcin /*44*/ NULL, 1115d4002b98SHong Zhang MatScale_MPISELL, 1116d4002b98SHong Zhang MatShift_MPISELL, 1117d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1118f4259b30SLisandro Dalcin NULL, 1119d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1120f4259b30SLisandro Dalcin NULL, 1121f4259b30SLisandro Dalcin NULL, 1122f4259b30SLisandro Dalcin NULL, 1123f4259b30SLisandro Dalcin NULL, 1124d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1125f4259b30SLisandro Dalcin NULL, 1126d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1127f4259b30SLisandro Dalcin NULL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin /*59*/ NULL, 1130d4002b98SHong Zhang MatDestroy_MPISELL, 1131d4002b98SHong Zhang MatView_MPISELL, 1132f4259b30SLisandro Dalcin NULL, 1133f4259b30SLisandro Dalcin NULL, 1134f4259b30SLisandro Dalcin /*64*/ NULL, 1135f4259b30SLisandro Dalcin NULL, 1136f4259b30SLisandro Dalcin NULL, 1137f4259b30SLisandro Dalcin NULL, 1138f4259b30SLisandro Dalcin NULL, 1139f4259b30SLisandro Dalcin /*69*/ NULL, 1140f4259b30SLisandro Dalcin NULL, 1141f4259b30SLisandro Dalcin NULL, 11428bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, /* reuse AIJ function */ 1143d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1144f4259b30SLisandro Dalcin NULL, 11458bb0f5c6SPierre Jolivet /*75*/ NULL, 11468bb0f5c6SPierre Jolivet NULL, 11478bb0f5c6SPierre Jolivet NULL, 1148f4259b30SLisandro Dalcin NULL, 1149f4259b30SLisandro Dalcin NULL, 1150f4259b30SLisandro Dalcin /*80*/ NULL, 1151f4259b30SLisandro Dalcin NULL, 1152f4259b30SLisandro Dalcin NULL, 1153f4259b30SLisandro Dalcin /*83*/ NULL, 1154f4259b30SLisandro Dalcin NULL, 1155f4259b30SLisandro Dalcin NULL, 1156f4259b30SLisandro Dalcin NULL, 1157f4259b30SLisandro Dalcin NULL, 1158f4259b30SLisandro Dalcin NULL, 1159f4259b30SLisandro Dalcin /*89*/ NULL, 1160f4259b30SLisandro Dalcin NULL, 1161f4259b30SLisandro Dalcin NULL, 1162f4259b30SLisandro Dalcin NULL, 11638bb0f5c6SPierre Jolivet MatConjugate_MPISELL, 1164f4259b30SLisandro Dalcin /*94*/ NULL, 1165f4259b30SLisandro Dalcin NULL, 1166*bb35897eSPierre Jolivet NULL, 1167*bb35897eSPierre Jolivet NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin /*99*/ NULL, 1170f4259b30SLisandro Dalcin NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin NULL, 1173f4259b30SLisandro Dalcin NULL, 11748bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPISELL, 1175f4259b30SLisandro Dalcin NULL, 1176f4259b30SLisandro Dalcin NULL, 1177d4002b98SHong Zhang MatGetGhosts_MPISELL, 1178f4259b30SLisandro Dalcin NULL, 11798bb0f5c6SPierre Jolivet /*109*/ NULL, 11808bb0f5c6SPierre Jolivet MatMultDiagonalBlock_MPISELL, 1181f4259b30SLisandro Dalcin NULL, 11828bb0f5c6SPierre Jolivet NULL, 11838bb0f5c6SPierre Jolivet NULL, 11848bb0f5c6SPierre Jolivet /*114*/ NULL, 11858bb0f5c6SPierre Jolivet NULL, 11868bb0f5c6SPierre Jolivet NULL, 11878bb0f5c6SPierre Jolivet MatInvertBlockDiagonal_MPISELL, 11888bb0f5c6SPierre Jolivet NULL, 11898bb0f5c6SPierre Jolivet /*119*/ NULL, 1190f4259b30SLisandro Dalcin NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin /*124*/ NULL, 1195f4259b30SLisandro Dalcin NULL, 1196f4259b30SLisandro Dalcin NULL, 1197f4259b30SLisandro Dalcin NULL, 11988bb0f5c6SPierre Jolivet NULL, 11998bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 1200f4259b30SLisandro Dalcin NULL, 1201f4259b30SLisandro Dalcin NULL, 1202f4259b30SLisandro Dalcin NULL, 1203f4259b30SLisandro Dalcin NULL, 1204f4259b30SLisandro Dalcin /*134*/ NULL, 1205f4259b30SLisandro Dalcin NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin /*139*/ NULL, 1210f4259b30SLisandro Dalcin NULL, 1211f4259b30SLisandro Dalcin NULL, 121203db1824SAlex Lindsay NULL, 1213c2be7ffeSStefano Zampini NULL, 1214dec0b466SHong Zhang NULL}; 1215d4002b98SHong Zhang 1216d4002b98SHong Zhang /*@C 121711a5261eSBarry Smith MatMPISELLSetPreallocation - Preallocates memory for a `MATMPISELL` sparse parallel matrix in sell format. 1218d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 121967be906fSBarry Smith setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 1220d4002b98SHong Zhang 1221d083f849SBarry Smith Collective 1222d4002b98SHong Zhang 1223d4002b98SHong Zhang Input Parameters: 1224d4002b98SHong Zhang + B - the matrix 1225d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1226d4002b98SHong Zhang (same value is used for all local rows) 1227d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1228d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 122967be906fSBarry Smith or NULL (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 1230d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1231d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1232d4002b98SHong Zhang the diagonal entry even if it is zero. 1233d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1234d4002b98SHong Zhang submatrix (same value is used for all local rows). 1235d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1236d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 123767be906fSBarry Smith each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 1238d4002b98SHong Zhang structure. The size of this array is equal to the number 1239d4002b98SHong Zhang of local rows, i.e 'm'. 1240d4002b98SHong Zhang 1241d4002b98SHong Zhang Example usage: 1242d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1243d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1244d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 124567be906fSBarry Smith as follows 1246d4002b98SHong Zhang 1247d4002b98SHong Zhang .vb 1248d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1249d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1250d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1251d4002b98SHong Zhang ------------------------------------- 1252d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1253d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1254d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1255d4002b98SHong Zhang ------------------------------------- 1256d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1257d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1258d4002b98SHong Zhang .ve 1259d4002b98SHong Zhang 126027430b45SBarry Smith This can be represented as a collection of submatrices as 1261d4002b98SHong Zhang 1262d4002b98SHong Zhang .vb 1263d4002b98SHong Zhang A B C 1264d4002b98SHong Zhang D E F 1265d4002b98SHong Zhang G H I 1266d4002b98SHong Zhang .ve 1267d4002b98SHong Zhang 1268d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1269d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1270d4002b98SHong Zhang 1271d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1272d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1273d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1274d4002b98SHong Zhang 1275d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1276d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1277d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1278d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 127927430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 12805163b989SNuno Nobre matrix, and [DF] as another SeqSELL matrix. 1281d4002b98SHong Zhang 128267be906fSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 12835163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and o_nz 12845163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 12855163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 12865163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 128727430b45SBarry Smith In this case, the values of d_nz,o_nz are 1288d4002b98SHong Zhang .vb 128927430b45SBarry Smith proc0 dnz = 2, o_nz = 2 129027430b45SBarry Smith proc1 dnz = 3, o_nz = 2 129127430b45SBarry Smith proc2 dnz = 1, o_nz = 4 1292d4002b98SHong Zhang .ve 1293d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1294d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1295d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1296d4002b98SHong Zhang 34 values. 1297d4002b98SHong Zhang 129867be906fSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 1299a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 130027430b45SBarry Smith In the above case the values for d_nnz,o_nnz are 1301d4002b98SHong Zhang .vb 130227430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 130327430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 130427430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 1305d4002b98SHong Zhang .ve 1306d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1307d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1308d4002b98SHong Zhang 1309d4002b98SHong Zhang Level: intermediate 1310d4002b98SHong Zhang 131167be906fSBarry Smith Notes: 131267be906fSBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 131367be906fSBarry Smith 131467be906fSBarry Smith The stored row and column indices begin with zero. 131567be906fSBarry Smith 131667be906fSBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 131767be906fSBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 131867be906fSBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 131967be906fSBarry Smith 132067be906fSBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 132167be906fSBarry Smith as the submatrix which is obtained by extraction the part corresponding to 132267be906fSBarry Smith the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 132367be906fSBarry Smith first row that belongs to the processor, r2 is the last row belonging to 132467be906fSBarry Smith the this processor, and c1-c2 is range of indices of the local part of a 132567be906fSBarry Smith vector suitable for applying the matrix to. This is an mxn matrix. In the 132667be906fSBarry Smith common case of a square matrix, the row and column ranges are the same and 132767be906fSBarry Smith the DIAGONAL part is also square. The remaining portion of the local 132867be906fSBarry Smith submatrix (mxN) constitute the OFF-DIAGONAL portion. 132967be906fSBarry Smith 133067be906fSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 133167be906fSBarry Smith 133267be906fSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 133367be906fSBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 133467be906fSBarry Smith You can also run with the option -info and look for messages with the string 133567be906fSBarry Smith malloc in them to see if additional memory allocation was needed. 133667be906fSBarry Smith 133794764886SPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreateSELL()`, 133811a5261eSBarry Smith `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`, `MATSELL` 1339d4002b98SHong Zhang @*/ 1340d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISELLSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 1341d71ae5a4SJacob Faibussowitsch { 1342d4002b98SHong Zhang PetscFunctionBegin; 1343d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1344d4002b98SHong Zhang PetscValidType(B, 1); 1345cac4c232SBarry Smith PetscTryMethod(B, "MatMPISELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 13463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1347d4002b98SHong Zhang } 1348d4002b98SHong Zhang 1349ed73aabaSBarry Smith /*MC 1350ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1351ed73aabaSBarry Smith based on the sliced Ellpack format 1352ed73aabaSBarry Smith 135327430b45SBarry Smith Options Database Key: 135420f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()` 1355ed73aabaSBarry Smith 1356ed73aabaSBarry Smith Level: beginner 1357ed73aabaSBarry Smith 135894764886SPierre Jolivet .seealso: `Mat`, `MatCreateSELL()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 1359ed73aabaSBarry Smith M*/ 1360ed73aabaSBarry Smith 1361d4002b98SHong Zhang /*@C 136211a5261eSBarry Smith MatCreateSELL - Creates a sparse parallel matrix in `MATSELL` format. 1363d4002b98SHong Zhang 1364d083f849SBarry Smith Collective 1365d4002b98SHong Zhang 1366d4002b98SHong Zhang Input Parameters: 1367d4002b98SHong Zhang + comm - MPI communicator 136811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 1369d4002b98SHong Zhang This value should be the same as the local size used in creating the 1370d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1371d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 137220f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 137320f4b53cSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 137420f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 137520f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 1376d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1377d4002b98SHong Zhang (same value is used for all local rows) 1378d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1379d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 138020f4b53cSBarry Smith or `NULL`, if d_rlenmax is used to specify the nonzero structure. 138120f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 1382d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1383d4002b98SHong Zhang submatrix (same value is used for all local rows). 1384d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1385d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 138620f4b53cSBarry Smith each row) or `NULL`, if `o_rlenmax` is used to specify the nonzero 1387d4002b98SHong Zhang structure. The size of this array is equal to the number 138820f4b53cSBarry Smith of local rows, i.e `m`. 1389d4002b98SHong Zhang 1390d4002b98SHong Zhang Output Parameter: 1391d4002b98SHong Zhang . A - the matrix 1392d4002b98SHong Zhang 139327430b45SBarry Smith Options Database Key: 1394fe59aa6dSJacob Faibussowitsch . -mat_sell_oneindex - Internally use indexing starting at 1 139527430b45SBarry Smith rather than 0. When calling `MatSetValues()`, 139627430b45SBarry Smith the user still MUST index entries starting at 0! 139727430b45SBarry Smith 139827430b45SBarry Smith Example: 139927430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 140027430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 140127430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 140227430b45SBarry Smith as follows 140327430b45SBarry Smith 140427430b45SBarry Smith .vb 140527430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 140627430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 140727430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 140827430b45SBarry Smith ------------------------------------- 140927430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 141027430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 141127430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 141227430b45SBarry Smith ------------------------------------- 141327430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 141427430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 141527430b45SBarry Smith .ve 141627430b45SBarry Smith 141720f4b53cSBarry Smith This can be represented as a collection of submatrices as 141827430b45SBarry Smith .vb 141927430b45SBarry Smith A B C 142027430b45SBarry Smith D E F 142127430b45SBarry Smith G H I 142227430b45SBarry Smith .ve 142327430b45SBarry Smith 142427430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 142527430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 142627430b45SBarry Smith 142727430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 142827430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 142927430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 143027430b45SBarry Smith 143127430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 143227430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 143327430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 143427430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 143527430b45SBarry Smith part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL` 14365163b989SNuno Nobre matrix, and [DF] as another `MATSEQSELL` matrix. 143727430b45SBarry Smith 143827430b45SBarry Smith When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 14395163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and o_rlenmax 14405163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 14415163b989SNuno Nobre One way to choose `d_rlenmax` and `o_rlenmax` is to use the maximum number of nonzeros over 14425163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 144320f4b53cSBarry Smith In this case, the values of d_rlenmax,o_rlenmax are 144427430b45SBarry Smith .vb 144520f4b53cSBarry Smith proc0 - d_rlenmax = 2, o_rlenmax = 2 144620f4b53cSBarry Smith proc1 - d_rlenmax = 3, o_rlenmax = 2 144720f4b53cSBarry Smith proc2 - d_rlenmax = 1, o_rlenmax = 4 144827430b45SBarry Smith .ve 144927430b45SBarry Smith We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 145027430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 145127430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 145227430b45SBarry Smith 34 values. 145327430b45SBarry Smith 145420f4b53cSBarry Smith When `d_rlen`, `o_rlen` parameters are specified, the storage is specified 145527430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 145620f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 145727430b45SBarry Smith .vb 145820f4b53cSBarry Smith proc0 - d_nnz = [2,2,2] and o_nnz = [2,2,2] 145920f4b53cSBarry Smith proc1 - d_nnz = [3,3,2] and o_nnz = [2,1,1] 146020f4b53cSBarry Smith proc2 - d_nnz = [1,1] and o_nnz = [4,4] 146127430b45SBarry Smith .ve 146227430b45SBarry Smith Here the space allocated is still 37 though there are 34 nonzeros because 146327430b45SBarry Smith the allocation is always done according to rlenmax. 146427430b45SBarry Smith 146527430b45SBarry Smith Level: intermediate 146627430b45SBarry Smith 146727430b45SBarry Smith Notes: 146811a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 1469f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 147011a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 1471d4002b98SHong Zhang 1472d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1473d4002b98SHong Zhang 147420f4b53cSBarry Smith `m`, `n`, `M`, `N` parameters specify the size of the matrix, and its partitioning across 147520f4b53cSBarry Smith processors, while `d_rlenmax`, `d_rlen`, `o_rlenmax` , `o_rlen` parameters specify the approximate 1476d4002b98SHong Zhang storage requirements for this matrix. 1477d4002b98SHong Zhang 147811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 1479d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1480d4002b98SHong Zhang that argument. 1481d4002b98SHong Zhang 1482d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1483d4002b98SHong Zhang (possibly both). 1484d4002b98SHong Zhang 1485d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1486d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1487d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1488d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 148920f4b53cSBarry Smith values corresponding to [`m` x `N`] submatrix. 1490d4002b98SHong Zhang 1491d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1492d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 149320f4b53cSBarry Smith partition etc.. where n0,n1,n2... are the input parameter `n`. 1494d4002b98SHong Zhang 1495d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 149620f4b53cSBarry Smith is the submatrix corresponding to the rows and columns `m`, `n` 1497d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1498d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1499d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1500d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1501d4002b98SHong Zhang illustrates this concept. 1502d4002b98SHong Zhang 1503d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1504d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1505d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1506d4002b98SHong Zhang local matrix (a rectangular submatrix). 1507d4002b98SHong Zhang 150820f4b53cSBarry Smith If `o_rlen`, `d_rlen` are specified, then `o_rlenmax`, and `d_rlenmax` are ignored. 1509d4002b98SHong Zhang 1510d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 151111a5261eSBarry Smith type `MATSEQSELL` is returned. If a matrix of type `MATMPISELL` is desired for this 151227430b45SBarry Smith type of communicator, use the construction mechanism 1513d4002b98SHong Zhang .vb 151427430b45SBarry Smith MatCreate(...,&A); 151527430b45SBarry Smith MatSetType(A,MATMPISELL); 151627430b45SBarry Smith MatSetSizes(A, m,n,M,N); 151727430b45SBarry Smith MatMPISELLSetPreallocation(A,...); 1518d4002b98SHong Zhang .ve 1519d4002b98SHong Zhang 152094764886SPierre Jolivet .seealso: `Mat`, `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MATMPISELL` 1521d4002b98SHong Zhang @*/ 1522d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[], Mat *A) 1523d71ae5a4SJacob Faibussowitsch { 1524d4002b98SHong Zhang PetscMPIInt size; 1525d4002b98SHong Zhang 1526d4002b98SHong Zhang PetscFunctionBegin; 15279566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 15289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 15299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1530d4002b98SHong Zhang if (size > 1) { 15319566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISELL)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A, d_rlenmax, d_rlen, o_rlenmax, o_rlen)); 1533d4002b98SHong Zhang } else { 15349566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 15359566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A, d_rlenmax, d_rlen)); 1536d4002b98SHong Zhang } 15373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1538d4002b98SHong Zhang } 1539d4002b98SHong Zhang 1540fa078d78SJacob Faibussowitsch /*@C 1541fa078d78SJacob Faibussowitsch MatMPISELLGetSeqSELL - Returns the local pieces of this distributed matrix 1542fa078d78SJacob Faibussowitsch 1543fa078d78SJacob Faibussowitsch Not Collective 1544fa078d78SJacob Faibussowitsch 1545fa078d78SJacob Faibussowitsch Input Parameter: 1546fa078d78SJacob Faibussowitsch . A - the `MATMPISELL` matrix 1547fa078d78SJacob Faibussowitsch 1548fa078d78SJacob Faibussowitsch Output Parameters: 1549fa078d78SJacob Faibussowitsch + Ad - The diagonal portion of `A` 15504cf0e950SBarry Smith . Ao - The off-diagonal portion of `A` 1551fa078d78SJacob Faibussowitsch - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 1552fa078d78SJacob Faibussowitsch 1553fa078d78SJacob Faibussowitsch Level: advanced 1554fa078d78SJacob Faibussowitsch 1555fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL` 1556fa078d78SJacob Faibussowitsch @*/ 1557fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetSeqSELL(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 1558fa078d78SJacob Faibussowitsch { 1559fa078d78SJacob Faibussowitsch Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1560fa078d78SJacob Faibussowitsch PetscBool flg; 1561fa078d78SJacob Faibussowitsch 1562fa078d78SJacob Faibussowitsch PetscFunctionBegin; 1563fa078d78SJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &flg)); 1564fa078d78SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPISELL matrix as input"); 1565fa078d78SJacob Faibussowitsch if (Ad) *Ad = a->A; 1566fa078d78SJacob Faibussowitsch if (Ao) *Ao = a->B; 1567fa078d78SJacob Faibussowitsch if (colmap) *colmap = a->garray; 1568fa078d78SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1569fa078d78SJacob Faibussowitsch } 1570fa078d78SJacob Faibussowitsch 1571fa078d78SJacob Faibussowitsch /*@C 1572fa078d78SJacob Faibussowitsch MatMPISELLGetLocalMatCondensed - Creates a `MATSEQSELL` matrix from an `MATMPISELL` matrix by 1573fa078d78SJacob Faibussowitsch taking all its local rows and NON-ZERO columns 1574fa078d78SJacob Faibussowitsch 1575fa078d78SJacob Faibussowitsch Not Collective 1576fa078d78SJacob Faibussowitsch 1577fa078d78SJacob Faibussowitsch Input Parameters: 1578fa078d78SJacob Faibussowitsch + A - the matrix 1579fa078d78SJacob Faibussowitsch . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 1580fa078d78SJacob Faibussowitsch . row - index sets of rows to extract (or `NULL`) 1581fa078d78SJacob Faibussowitsch - col - index sets of columns to extract (or `NULL`) 1582fa078d78SJacob Faibussowitsch 1583fa078d78SJacob Faibussowitsch Output Parameter: 1584fa078d78SJacob Faibussowitsch . A_loc - the local sequential matrix generated 1585fa078d78SJacob Faibussowitsch 1586fa078d78SJacob Faibussowitsch Level: advanced 1587fa078d78SJacob Faibussowitsch 1588fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL`, `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()` 1589fa078d78SJacob Faibussowitsch @*/ 1590fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 1591fa078d78SJacob Faibussowitsch { 1592fa078d78SJacob Faibussowitsch Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1593fa078d78SJacob Faibussowitsch PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 1594fa078d78SJacob Faibussowitsch IS isrowa, iscola; 1595fa078d78SJacob Faibussowitsch Mat *aloc; 1596fa078d78SJacob Faibussowitsch PetscBool match; 1597fa078d78SJacob Faibussowitsch 1598fa078d78SJacob Faibussowitsch PetscFunctionBegin; 1599fa078d78SJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &match)); 1600fa078d78SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPISELL matrix as input"); 1601fa078d78SJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 1602fa078d78SJacob Faibussowitsch if (!row) { 1603fa078d78SJacob Faibussowitsch start = A->rmap->rstart; 1604fa078d78SJacob Faibussowitsch end = A->rmap->rend; 1605fa078d78SJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 1606fa078d78SJacob Faibussowitsch } else { 1607fa078d78SJacob Faibussowitsch isrowa = *row; 1608fa078d78SJacob Faibussowitsch } 1609fa078d78SJacob Faibussowitsch if (!col) { 1610fa078d78SJacob Faibussowitsch start = A->cmap->rstart; 1611fa078d78SJacob Faibussowitsch cmap = a->garray; 1612fa078d78SJacob Faibussowitsch nzA = a->A->cmap->n; 1613fa078d78SJacob Faibussowitsch nzB = a->B->cmap->n; 1614fa078d78SJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 1615fa078d78SJacob Faibussowitsch ncols = 0; 1616fa078d78SJacob Faibussowitsch for (i = 0; i < nzB; i++) { 1617fa078d78SJacob Faibussowitsch if (cmap[i] < start) idx[ncols++] = cmap[i]; 1618fa078d78SJacob Faibussowitsch else break; 1619fa078d78SJacob Faibussowitsch } 1620fa078d78SJacob Faibussowitsch imark = i; 1621fa078d78SJacob Faibussowitsch for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 1622fa078d78SJacob Faibussowitsch for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 1623fa078d78SJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 1624fa078d78SJacob Faibussowitsch } else { 1625fa078d78SJacob Faibussowitsch iscola = *col; 1626fa078d78SJacob Faibussowitsch } 1627fa078d78SJacob Faibussowitsch if (scall != MAT_INITIAL_MATRIX) { 1628fa078d78SJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 1629fa078d78SJacob Faibussowitsch aloc[0] = *A_loc; 1630fa078d78SJacob Faibussowitsch } 1631fa078d78SJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 1632fa078d78SJacob Faibussowitsch *A_loc = aloc[0]; 1633fa078d78SJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1634fa078d78SJacob Faibussowitsch if (!row) PetscCall(ISDestroy(&isrowa)); 1635fa078d78SJacob Faibussowitsch if (!col) PetscCall(ISDestroy(&iscola)); 1636fa078d78SJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 1637fa078d78SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1638fa078d78SJacob Faibussowitsch } 1639fa078d78SJacob Faibussowitsch 1640d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1641d4002b98SHong Zhang 1642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1643d71ae5a4SJacob Faibussowitsch { 1644d4002b98SHong Zhang Mat_MPISELL *a = (Mat_MPISELL *)A->data; 1645d4002b98SHong Zhang Mat B; 1646d4002b98SHong Zhang Mat_MPIAIJ *b; 1647d4002b98SHong Zhang 1648d4002b98SHong Zhang PetscFunctionBegin; 164928b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1650d4002b98SHong Zhang 165194a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 165294a8b381SRichard Tran Mills B = *newmat; 165394a8b381SRichard Tran Mills } else { 16549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 16559566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 16569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 16579566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 16589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 16599566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 166094a8b381SRichard Tran Mills } 1661d4002b98SHong Zhang b = (Mat_MPIAIJ *)B->data; 166294a8b381SRichard Tran Mills 166394a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16649566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16659566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 166694a8b381SRichard Tran Mills } else { 16679566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16689566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16699566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16709566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16719566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 16739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 16749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 167694a8b381SRichard Tran Mills } 1677d4002b98SHong Zhang 1678d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16799566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1680d4002b98SHong Zhang } else { 1681d4002b98SHong Zhang *newmat = B; 1682d4002b98SHong Zhang } 16833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1684d4002b98SHong Zhang } 1685d4002b98SHong Zhang 1686d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1687d71ae5a4SJacob Faibussowitsch { 1688d4002b98SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1689d4002b98SHong Zhang Mat B; 1690d4002b98SHong Zhang Mat_MPISELL *b; 1691d4002b98SHong Zhang 1692d4002b98SHong Zhang PetscFunctionBegin; 169328b400f6SJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 1694d4002b98SHong Zhang 169594a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 169694a8b381SRichard Tran Mills B = *newmat; 169794a8b381SRichard Tran Mills } else { 16982d1451d4SHong Zhang Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)a->A->data, *Ba = (Mat_SeqAIJ *)a->B->data; 16992d1451d4SHong Zhang PetscInt i, d_nz = 0, o_nz = 0, m = A->rmap->N, n = A->cmap->N, lm = A->rmap->n, ln = A->cmap->n; 17002d1451d4SHong Zhang PetscInt *d_nnz, *o_nnz; 17012d1451d4SHong Zhang PetscCall(PetscMalloc2(lm, &d_nnz, lm, &o_nnz)); 17022d1451d4SHong Zhang for (i = 0; i < lm; i++) { 17032d1451d4SHong Zhang d_nnz[i] = Aa->i[i + 1] - Aa->i[i]; 17042d1451d4SHong Zhang o_nnz[i] = Ba->i[i + 1] - Ba->i[i]; 17052d1451d4SHong Zhang if (d_nnz[i] > d_nz) d_nz = d_nnz[i]; 17062d1451d4SHong Zhang if (o_nnz[i] > o_nz) o_nz = o_nnz[i]; 17072d1451d4SHong Zhang } 17089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 17099566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISELL)); 17102d1451d4SHong Zhang PetscCall(MatSetSizes(B, lm, ln, m, n)); 17119566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 17122d1451d4SHong Zhang PetscCall(MatSeqSELLSetPreallocation(B, d_nz, d_nnz)); 17132d1451d4SHong Zhang PetscCall(MatMPISELLSetPreallocation(B, d_nz, d_nnz, o_nz, o_nnz)); 17142d1451d4SHong Zhang PetscCall(PetscFree2(d_nnz, o_nnz)); 171594a8b381SRichard Tran Mills } 1716d4002b98SHong Zhang b = (Mat_MPISELL *)B->data; 171794a8b381SRichard Tran Mills 171894a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17199566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17209566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 172194a8b381SRichard Tran Mills } else { 17229566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17249566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17259566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 17279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 17282d1451d4SHong Zhang PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 17292d1451d4SHong Zhang PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 173094a8b381SRichard Tran Mills } 1731d4002b98SHong Zhang 1732d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17339566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 1734d4002b98SHong Zhang } else { 1735d4002b98SHong Zhang *newmat = B; 1736d4002b98SHong Zhang } 17373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1738d4002b98SHong Zhang } 1739d4002b98SHong Zhang 1740d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISELL(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1741d71ae5a4SJacob Faibussowitsch { 1742d4002b98SHong Zhang Mat_MPISELL *mat = (Mat_MPISELL *)matin->data; 1743f4259b30SLisandro Dalcin Vec bb1 = NULL; 1744d4002b98SHong Zhang 1745d4002b98SHong Zhang PetscFunctionBegin; 1746d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17479566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1749d4002b98SHong Zhang } 1750d4002b98SHong Zhang 175148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 1752d4002b98SHong Zhang 1753d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1754d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17559566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1756d4002b98SHong Zhang its--; 1757d4002b98SHong Zhang } 1758d4002b98SHong Zhang 1759d4002b98SHong Zhang while (its--) { 17609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1762d4002b98SHong Zhang 1763d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17649566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17659566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1766d4002b98SHong Zhang 1767d4002b98SHong Zhang /* local sweep */ 17689566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 1769d4002b98SHong Zhang } 1770d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1771d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17729566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1773d4002b98SHong Zhang its--; 1774d4002b98SHong Zhang } 1775d4002b98SHong Zhang while (its--) { 17769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1778d4002b98SHong Zhang 1779d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17809566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17819566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1782d4002b98SHong Zhang 1783d4002b98SHong Zhang /* local sweep */ 17849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 1785d4002b98SHong Zhang } 1786d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1787d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17889566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 1789d4002b98SHong Zhang its--; 1790d4002b98SHong Zhang } 1791d4002b98SHong Zhang while (its--) { 17929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1794d4002b98SHong Zhang 1795d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17969566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 17979566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1798d4002b98SHong Zhang 1799d4002b98SHong Zhang /* local sweep */ 18009566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 1801d4002b98SHong Zhang } 1802d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1803d4002b98SHong Zhang 18049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1805d4002b98SHong Zhang 1806d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 18073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1808d4002b98SHong Zhang } 1809d4002b98SHong Zhang 1810b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1811b5917f1bSHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPISELL_MPISELLCUDA(Mat, MatType, MatReuse, Mat *); 1812b5917f1bSHong Zhang #endif 1813b5917f1bSHong Zhang 1814d4002b98SHong Zhang /*MC 1815d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1816d4002b98SHong Zhang 1817d4002b98SHong Zhang Options Database Keys: 181811a5261eSBarry Smith . -mat_type mpisell - sets the matrix type to `MATMPISELL` during a call to `MatSetFromOptions()` 1819d4002b98SHong Zhang 1820d4002b98SHong Zhang Level: beginner 1821d4002b98SHong Zhang 182267be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MATSEQSELL` `MatCreateSELL()` 1823d4002b98SHong Zhang M*/ 1824d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1825d71ae5a4SJacob Faibussowitsch { 1826d4002b98SHong Zhang Mat_MPISELL *b; 1827d4002b98SHong Zhang PetscMPIInt size; 1828d4002b98SHong Zhang 1829d4002b98SHong Zhang PetscFunctionBegin; 18309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 18314dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 1832d4002b98SHong Zhang B->data = (void *)b; 1833aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 1834d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1835d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1836d4002b98SHong Zhang b->size = size; 18379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 1838d4002b98SHong Zhang /* build cache for off array entries formed */ 18399566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 1840d4002b98SHong Zhang 1841d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1842f4259b30SLisandro Dalcin b->colmap = NULL; 1843f4259b30SLisandro Dalcin b->garray = NULL; 1844d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1845d4002b98SHong Zhang 1846d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1847d4002b98SHong Zhang b->lvec = NULL; 1848d4002b98SHong Zhang b->Mvctx = NULL; 1849d4002b98SHong Zhang 1850d4002b98SHong Zhang /* stuff for MatGetRow() */ 1851f4259b30SLisandro Dalcin b->rowindices = NULL; 1852f4259b30SLisandro Dalcin b->rowvalues = NULL; 1853d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1854d4002b98SHong Zhang 18559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISELL)); 18569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISELL)); 18579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPISELL)); 18589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISELLSetPreallocation_C", MatMPISELLSetPreallocation_MPISELL)); 18599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpiaij_C", MatConvert_MPISELL_MPIAIJ)); 1860b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA) 1861b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpisellcuda_C", MatConvert_MPISELL_MPISELLCUDA)); 1862b5917f1bSHong Zhang #endif 18639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPISELL)); 18649566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISELL)); 18653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1866d4002b98SHong Zhang } 1867