1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 11d4002b98SHong Zhang This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 12d4002b98SHong Zhang and MATMPISELL otherwise. As a result, for single process communicators, 13d4002b98SHong Zhang MatSeqSELLSetPreallocation is supported, and similarly MatMPISELLSetPreallocation is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 18d4002b98SHong Zhang . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 22d4002b98SHong Zhang .seealso: MatCreateSELL(), MatCreateSeqSELL(), MATSEQSELL, MATMPISELL 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25d4002b98SHong Zhang PetscErrorCode MatDiagonalSet_MPISELL(Mat Y,Vec D,InsertMode is) 26d4002b98SHong Zhang { 27d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A,D,is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y,D,is)); 34d4002b98SHong Zhang } 35d4002b98SHong Zhang PetscFunctionReturn(0); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43d4002b98SHong Zhang has an order N integer array but is fast to acess. 44d4002b98SHong Zhang */ 45d4002b98SHong Zhang PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d4002b98SHong Zhang { 47d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 48d4002b98SHong Zhang PetscInt n=sell->B->cmap->n,i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray,PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 539566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(n,mat->cmap->N+1,&sell->colmap)); 54d4002b98SHong Zhang for (i=0; i<n; i++) { 559566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(sell->colmap,sell->garray[i]+1,i+1,INSERT_VALUES)); 56d4002b98SHong Zhang } 57d4002b98SHong Zhang #else 589566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N+1,&sell->colmap)); 599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N+1)*sizeof(PetscInt))); 60d4002b98SHong Zhang for (i=0; i<n; i++) sell->colmap[sell->garray[i]] = i+1; 61d4002b98SHong Zhang #endif 62d4002b98SHong Zhang PetscFunctionReturn(0); 63d4002b98SHong Zhang } 64d4002b98SHong Zhang 65d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row,col,value,addv,orow,ocol) \ 66d4002b98SHong Zhang { \ 67d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 68d4002b98SHong Zhang else high1 = nrow1; \ 69d4002b98SHong Zhang lastcol1 = col; \ 70d4002b98SHong Zhang while (high1-low1 > 5) { \ 71d4002b98SHong Zhang t = (low1+high1)/2; \ 72d4002b98SHong Zhang if (*(cp1+8*t) > col) high1 = t; \ 73d4002b98SHong Zhang else low1 = t; \ 74d4002b98SHong Zhang } \ 75d4002b98SHong Zhang for (_i=low1; _i<high1; _i++) { \ 76d4002b98SHong Zhang if (*(cp1+8*_i) > col) break; \ 77d4002b98SHong Zhang if (*(cp1+8*_i) == col) { \ 78d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp1+8*_i) += value; \ 79d4002b98SHong Zhang else *(vp1+8*_i) = value; \ 80d4002b98SHong Zhang goto a_noinsert; \ 81d4002b98SHong Zhang } \ 82d4002b98SHong Zhang } \ 83d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low1 = 0; high1 = nrow1;goto a_noinsert;} \ 84d4002b98SHong Zhang if (nonew == 1) {low1 = 0; high1 = nrow1; goto a_noinsert;} \ 852c71b3e2SJacob Faibussowitsch PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 86d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,am,1,nrow1,a->sliidx,row/8,row,col,a->colidx,a->val,cp1,vp1,nonew,MatScalar); \ 87d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 88d4002b98SHong Zhang for (ii=nrow1-1; ii>=_i; ii--) { \ 89d4002b98SHong Zhang *(cp1+8*(ii+1)) = *(cp1+8*ii); \ 90d4002b98SHong Zhang *(vp1+8*(ii+1)) = *(vp1+8*ii); \ 91d4002b98SHong Zhang } \ 92d4002b98SHong Zhang *(cp1+8*_i) = col; \ 93d4002b98SHong Zhang *(vp1+8*_i) = value; \ 94d4002b98SHong Zhang a->nz++; nrow1++; A->nonzerostate++; \ 95d4002b98SHong Zhang a_noinsert: ; \ 96d4002b98SHong Zhang a->rlen[row] = nrow1; \ 97d4002b98SHong Zhang } 98d4002b98SHong Zhang 99d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row,col,value,addv,orow,ocol) \ 100d4002b98SHong Zhang { \ 101d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 102d4002b98SHong Zhang else high2 = nrow2; \ 103d4002b98SHong Zhang lastcol2 = col; \ 104d4002b98SHong Zhang while (high2-low2 > 5) { \ 105d4002b98SHong Zhang t = (low2+high2)/2; \ 106d4002b98SHong Zhang if (*(cp2+8*t) > col) high2 = t; \ 107d4002b98SHong Zhang else low2 = t; \ 108d4002b98SHong Zhang } \ 109d4002b98SHong Zhang for (_i=low2; _i<high2; _i++) { \ 110d4002b98SHong Zhang if (*(cp2+8*_i) > col) break; \ 111d4002b98SHong Zhang if (*(cp2+8*_i) == col) { \ 112d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp2+8*_i) += value; \ 113d4002b98SHong Zhang else *(vp2+8*_i) = value; \ 114d4002b98SHong Zhang goto b_noinsert; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang } \ 117d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 118d4002b98SHong Zhang if (nonew == 1) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 1192c71b3e2SJacob Faibussowitsch PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 120d4002b98SHong Zhang MatSeqXSELLReallocateSELL(B,bm,1,nrow2,b->sliidx,row/8,row,col,b->colidx,b->val,cp2,vp2,nonew,MatScalar); \ 121d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 122d4002b98SHong Zhang for (ii=nrow2-1; ii>=_i; ii--) { \ 123d4002b98SHong Zhang *(cp2+8*(ii+1)) = *(cp2+8*ii); \ 124d4002b98SHong Zhang *(vp2+8*(ii+1)) = *(vp2+8*ii); \ 125d4002b98SHong Zhang } \ 126d4002b98SHong Zhang *(cp2+8*_i) = col; \ 127d4002b98SHong Zhang *(vp2+8*_i) = value; \ 128d4002b98SHong Zhang b->nz++; nrow2++; B->nonzerostate++; \ 129d4002b98SHong Zhang b_noinsert: ; \ 130d4002b98SHong Zhang b->rlen[row] = nrow2; \ 131d4002b98SHong Zhang } 132d4002b98SHong Zhang 133d4002b98SHong Zhang PetscErrorCode MatSetValues_MPISELL(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134d4002b98SHong Zhang { 135d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 136d4002b98SHong Zhang PetscScalar value; 137d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend,shift1,shift2; 138d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 139d4002b98SHong Zhang PetscBool roworiented=sell->roworiented; 140d4002b98SHong Zhang 141d4002b98SHong Zhang /* Some Variables required in the macro */ 142d4002b98SHong Zhang Mat A=sell->A; 143d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 144d4002b98SHong Zhang PetscBool ignorezeroentries=a->ignorezeroentries,found; 145d4002b98SHong Zhang Mat B=sell->B; 146d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 147d4002b98SHong Zhang PetscInt *cp1,*cp2,ii,_i,nrow1,nrow2,low1,high1,low2,high2,t,lastcol1,lastcol2; 148d4002b98SHong Zhang MatScalar *vp1,*vp2; 149d4002b98SHong Zhang 150d4002b98SHong Zhang PetscFunctionBegin; 151d4002b98SHong Zhang for (i=0; i<m; i++) { 152d4002b98SHong Zhang if (im[i] < 0) continue; 1536bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 154d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 155d4002b98SHong Zhang row = im[i] - rstart; 156d4002b98SHong Zhang lastcol1 = -1; 157d4002b98SHong Zhang shift1 = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 158d4002b98SHong Zhang cp1 = a->colidx+shift1; 159d4002b98SHong Zhang vp1 = a->val+shift1; 160d4002b98SHong Zhang nrow1 = a->rlen[row]; 161d4002b98SHong Zhang low1 = 0; 162d4002b98SHong Zhang high1 = nrow1; 163d4002b98SHong Zhang lastcol2 = -1; 164d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 165d4002b98SHong Zhang cp2 = b->colidx+shift2; 166d4002b98SHong Zhang vp2 = b->val+shift2; 167d4002b98SHong Zhang nrow2 = b->rlen[row]; 168d4002b98SHong Zhang low2 = 0; 169d4002b98SHong Zhang high2 = nrow2; 170d4002b98SHong Zhang 171d4002b98SHong Zhang for (j=0; j<n; j++) { 172d4002b98SHong Zhang if (roworiented) value = v[i*n+j]; 173d4002b98SHong Zhang else value = v[i+j*m]; 174d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 175d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 176d4002b98SHong Zhang col = in[j] - cstart; 177d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A,row,col,value,addv,im[i],in[j],cp1,vp1,lastcol1,low1,high1); /* set one value */ 178d4002b98SHong Zhang } else if (in[j] < 0) continue; 1796bdcaf15SBarry Smith else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 180d4002b98SHong Zhang else { 181d4002b98SHong Zhang if (mat->was_assembled) { 182d4002b98SHong Zhang if (!sell->colmap) { 1839566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 184d4002b98SHong Zhang } 185d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 1869566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,in[j]+1,&col)); 187d4002b98SHong Zhang col--; 188d4002b98SHong Zhang #else 189d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 190d4002b98SHong Zhang #endif 191d4002b98SHong Zhang if (col < 0 && !((Mat_SeqSELL*)(sell->B->data))->nonew) { 1929566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 193d4002b98SHong Zhang col = in[j]; 194d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 195d4002b98SHong Zhang B = sell->B; 196d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 197d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 198d4002b98SHong Zhang cp2 = b->colidx+shift2; 199d4002b98SHong Zhang vp2 = b->val+shift2; 200d4002b98SHong Zhang nrow2 = b->rlen[row]; 201d4002b98SHong Zhang low2 = 0; 202d4002b98SHong Zhang high2 = nrow2; 2032c71b3e2SJacob Faibussowitsch } else PetscCheckFalse(col < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 204d4002b98SHong Zhang } else col = in[j]; 205d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B,row,col,value,addv,im[i],in[j],cp2,vp2,lastcol2,low2,high2); /* set one value */ 206d4002b98SHong Zhang } 207d4002b98SHong Zhang } 208d4002b98SHong Zhang } else { 20928b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 210d4002b98SHong Zhang if (!sell->donotstash) { 211d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 212d4002b98SHong Zhang if (roworiented) { 2139566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 214d4002b98SHong Zhang } else { 2159566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 216d4002b98SHong Zhang } 217d4002b98SHong Zhang } 218d4002b98SHong Zhang } 219d4002b98SHong Zhang } 220d4002b98SHong Zhang PetscFunctionReturn(0); 221d4002b98SHong Zhang } 222d4002b98SHong Zhang 223d4002b98SHong Zhang PetscErrorCode MatGetValues_MPISELL(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 224d4002b98SHong Zhang { 225d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 226d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend; 227d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 228d4002b98SHong Zhang 229d4002b98SHong Zhang PetscFunctionBegin; 230d4002b98SHong Zhang for (i=0; i<m; i++) { 23154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 23254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 233d4002b98SHong Zhang if (idxm[i] >= rstart && idxm[i] < rend) { 234d4002b98SHong Zhang row = idxm[i] - rstart; 235d4002b98SHong Zhang for (j=0; j<n; j++) { 23654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 23754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 238d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 239d4002b98SHong Zhang col = idxn[j] - cstart; 2409566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A,1,&row,1,&col,v+i*n+j)); 241d4002b98SHong Zhang } else { 242d4002b98SHong Zhang if (!sell->colmap) { 2439566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 244d4002b98SHong Zhang } 245d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 2469566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,idxn[j]+1,&col)); 247d4002b98SHong Zhang col--; 248d4002b98SHong Zhang #else 249d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 250d4002b98SHong Zhang #endif 251d4002b98SHong Zhang if ((col < 0) || (sell->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 252d4002b98SHong Zhang else { 2539566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->B,1,&row,1,&col,v+i*n+j)); 254d4002b98SHong Zhang } 255d4002b98SHong Zhang } 256d4002b98SHong Zhang } 257d4002b98SHong Zhang } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 258d4002b98SHong Zhang } 259d4002b98SHong Zhang PetscFunctionReturn(0); 260d4002b98SHong Zhang } 261d4002b98SHong Zhang 262d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat,Vec,Vec); 263d4002b98SHong Zhang 264d4002b98SHong Zhang PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat,MatAssemblyType mode) 265d4002b98SHong Zhang { 266d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 267d4002b98SHong Zhang PetscInt nstash,reallocs; 268d4002b98SHong Zhang 269d4002b98SHong Zhang PetscFunctionBegin; 270d4002b98SHong Zhang if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 271d4002b98SHong Zhang 2729566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 2739566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 2749566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 275d4002b98SHong Zhang PetscFunctionReturn(0); 276d4002b98SHong Zhang } 277d4002b98SHong Zhang 278d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat,MatAssemblyType mode) 279d4002b98SHong Zhang { 280d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 281d4002b98SHong Zhang PetscMPIInt n; 282d4002b98SHong Zhang PetscInt i,flg; 283d4002b98SHong Zhang PetscInt *row,*col; 284d4002b98SHong Zhang PetscScalar *val; 285d4002b98SHong Zhang PetscBool other_disassembled; 286d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 287d4002b98SHong Zhang PetscFunctionBegin; 288d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 289d4002b98SHong Zhang while (1) { 2909566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 291d4002b98SHong Zhang if (!flg) break; 292d4002b98SHong Zhang 293d4002b98SHong Zhang for (i=0; i<n; i++) { /* assemble one by one */ 2949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat,1,row+i,1,col+i,val+i,mat->insertmode)); 295d4002b98SHong Zhang } 296d4002b98SHong Zhang } 2979566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 298d4002b98SHong Zhang } 2999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A,mode)); 3009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A,mode)); 301d4002b98SHong Zhang 302d4002b98SHong Zhang /* 303d4002b98SHong Zhang determine if any processor has disassembled, if so we must 304d4002b98SHong Zhang also disassemble ourselfs, in order that we may reassemble. 305d4002b98SHong Zhang */ 306d4002b98SHong Zhang /* 307d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 308d4002b98SHong Zhang no processor disassembled thus we can skip this stuff 309d4002b98SHong Zhang */ 310d4002b98SHong Zhang if (!((Mat_SeqSELL*)sell->B->data)->nonew) { 3119566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 3122c71b3e2SJacob Faibussowitsch PetscCheckFalse(mat->was_assembled && !other_disassembled,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatDisAssemble not implemented yet"); 313d4002b98SHong Zhang } 314d4002b98SHong Zhang if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 3159566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPISELL(mat)); 316d4002b98SHong Zhang } 317d4002b98SHong Zhang /* 3189566063dSJacob Faibussowitsch PetscCall(MatSetOption(sell->B,MAT_USE_INODES,PETSC_FALSE)); 319d4002b98SHong Zhang */ 3209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B,mode)); 3219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B,mode)); 3229566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 323f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3249566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 325d4002b98SHong Zhang 326d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 327d4002b98SHong Zhang if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL*)(sell->A->data))->nonew) { 328d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 3299566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 330d4002b98SHong Zhang } 331d4002b98SHong Zhang PetscFunctionReturn(0); 332d4002b98SHong Zhang } 333d4002b98SHong Zhang 334d4002b98SHong Zhang PetscErrorCode MatZeroEntries_MPISELL(Mat A) 335d4002b98SHong Zhang { 336d4002b98SHong Zhang Mat_MPISELL *l=(Mat_MPISELL*)A->data; 337d4002b98SHong Zhang 338d4002b98SHong Zhang PetscFunctionBegin; 3399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 341d4002b98SHong Zhang PetscFunctionReturn(0); 342d4002b98SHong Zhang } 343d4002b98SHong Zhang 344d4002b98SHong Zhang PetscErrorCode MatMult_MPISELL(Mat A,Vec xx,Vec yy) 345d4002b98SHong Zhang { 346d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 347d4002b98SHong Zhang PetscInt nt; 348d4002b98SHong Zhang 349d4002b98SHong Zhang PetscFunctionBegin; 3509566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 3512c71b3e2SJacob Faibussowitsch PetscCheckFalse(nt != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",A->cmap->n,nt); 3529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 3549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3559566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 356d4002b98SHong Zhang PetscFunctionReturn(0); 357d4002b98SHong Zhang } 358d4002b98SHong Zhang 359d4002b98SHong Zhang PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A,Vec bb,Vec xx) 360d4002b98SHong Zhang { 361d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 362d4002b98SHong Zhang 363d4002b98SHong Zhang PetscFunctionBegin; 3649566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A,bb,xx)); 365d4002b98SHong Zhang PetscFunctionReturn(0); 366d4002b98SHong Zhang } 367d4002b98SHong Zhang 368d4002b98SHong Zhang PetscErrorCode MatMultAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 369d4002b98SHong Zhang { 370d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 371d4002b98SHong Zhang 372d4002b98SHong Zhang PetscFunctionBegin; 3739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3749566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 3759566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 377d4002b98SHong Zhang PetscFunctionReturn(0); 378d4002b98SHong Zhang } 379d4002b98SHong Zhang 380d4002b98SHong Zhang PetscErrorCode MatMultTranspose_MPISELL(Mat A,Vec xx,Vec yy) 381d4002b98SHong Zhang { 382d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 383d4002b98SHong Zhang 384d4002b98SHong Zhang PetscFunctionBegin; 385d4002b98SHong Zhang /* do nondiagonal part */ 3869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 387d4002b98SHong Zhang /* do local part */ 3889566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 389a29b4eb7SJunchao Zhang /* add partial results together */ 3909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 3919566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 392d4002b98SHong Zhang PetscFunctionReturn(0); 393d4002b98SHong Zhang } 394d4002b98SHong Zhang 395d4002b98SHong Zhang PetscErrorCode MatIsTranspose_MPISELL(Mat Amat,Mat Bmat,PetscReal tol,PetscBool *f) 396d4002b98SHong Zhang { 397d4002b98SHong Zhang MPI_Comm comm; 398d4002b98SHong Zhang Mat_MPISELL *Asell=(Mat_MPISELL*)Amat->data,*Bsell; 399d4002b98SHong Zhang Mat Adia=Asell->A,Bdia,Aoff,Boff,*Aoffs,*Boffs; 400d4002b98SHong Zhang IS Me,Notme; 401d4002b98SHong Zhang PetscInt M,N,first,last,*notme,i; 402d4002b98SHong Zhang PetscMPIInt size; 403d4002b98SHong Zhang 404d4002b98SHong Zhang PetscFunctionBegin; 405d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 406d4002b98SHong Zhang Bsell = (Mat_MPISELL*)Bmat->data; Bdia = Bsell->A; 4079566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia,Bdia,tol,f)); 408d4002b98SHong Zhang if (!*f) PetscFunctionReturn(0); 4099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat,&comm)); 4109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 411d4002b98SHong Zhang if (size == 1) PetscFunctionReturn(0); 412d4002b98SHong Zhang 413d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4149566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat,&M,&N)); 4159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat,&first,&last)); 4169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N-last+first,¬me)); 417d4002b98SHong Zhang for (i=0; i<first; i++) notme[i] = i; 418d4002b98SHong Zhang for (i=last; i<M; i++) notme[i-last+first] = i; 4199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,PETSC_COPY_VALUES,&Notme)); 4209566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me)); 4219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs)); 422d4002b98SHong Zhang Aoff = Aoffs[0]; 4239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs)); 424d4002b98SHong Zhang Boff = Boffs[0]; 4259566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff,Boff,tol,f)); 4269566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Aoffs)); 4279566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Boffs)); 4289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4309566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 431d4002b98SHong Zhang PetscFunctionReturn(0); 432d4002b98SHong Zhang } 433d4002b98SHong Zhang 434d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 435d4002b98SHong Zhang { 436d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 437d4002b98SHong Zhang 438d4002b98SHong Zhang PetscFunctionBegin; 439d4002b98SHong Zhang /* do nondiagonal part */ 4409566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 441d4002b98SHong Zhang /* do local part */ 4429566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 443e4a140f6SJunchao Zhang /* add partial results together */ 4449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 4459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 446d4002b98SHong Zhang PetscFunctionReturn(0); 447d4002b98SHong Zhang } 448d4002b98SHong Zhang 449d4002b98SHong Zhang /* 450d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 451d4002b98SHong Zhang diagonal block 452d4002b98SHong Zhang */ 453d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_MPISELL(Mat A,Vec v) 454d4002b98SHong Zhang { 455d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 456d4002b98SHong Zhang 457d4002b98SHong Zhang PetscFunctionBegin; 4582c71b3e2SJacob Faibussowitsch PetscCheckFalse(A->rmap->N != A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 4592c71b3e2SJacob Faibussowitsch PetscCheckFalse(A->rmap->rstart != A->cmap->rstart || A->rmap->rend != A->cmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"row partition must equal col partition"); 4609566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A,v)); 461d4002b98SHong Zhang PetscFunctionReturn(0); 462d4002b98SHong Zhang } 463d4002b98SHong Zhang 464d4002b98SHong Zhang PetscErrorCode MatScale_MPISELL(Mat A,PetscScalar aa) 465d4002b98SHong Zhang { 466d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 467d4002b98SHong Zhang 468d4002b98SHong Zhang PetscFunctionBegin; 4699566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 4709566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 471d4002b98SHong Zhang PetscFunctionReturn(0); 472d4002b98SHong Zhang } 473d4002b98SHong Zhang 474d4002b98SHong Zhang PetscErrorCode MatDestroy_MPISELL(Mat mat) 475d4002b98SHong Zhang { 476d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 477d4002b98SHong Zhang 478d4002b98SHong Zhang PetscFunctionBegin; 479d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 480c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 481d4002b98SHong Zhang #endif 4829566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 4839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 4849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 4859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 486d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 4879566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&sell->colmap)); 488d4002b98SHong Zhang #else 4899566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 490d4002b98SHong Zhang #endif 4919566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 4929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 4939566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 4949566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 4959566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 4969566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 497d4002b98SHong Zhang 4989566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 4999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 5009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 5019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C",NULL)); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISELLSetPreallocation_C",NULL)); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisell_mpiaij_C",NULL)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 505d4002b98SHong Zhang PetscFunctionReturn(0); 506d4002b98SHong Zhang } 507d4002b98SHong Zhang 508d4002b98SHong Zhang #include <petscdraw.h> 509d4002b98SHong Zhang PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 510d4002b98SHong Zhang { 511d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 512d4002b98SHong Zhang PetscErrorCode ierr; 513d4002b98SHong Zhang PetscMPIInt rank=sell->rank,size=sell->size; 514d4002b98SHong Zhang PetscBool isdraw,iascii,isbinary; 515d4002b98SHong Zhang PetscViewer sviewer; 516d4002b98SHong Zhang PetscViewerFormat format; 517d4002b98SHong Zhang 518d4002b98SHong Zhang PetscFunctionBegin; 5199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 5219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 522d4002b98SHong Zhang if (iascii) { 5239566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 524d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 525d4002b98SHong Zhang MatInfo info; 5266335e310SSatish Balay PetscInt *inodes; 527d4002b98SHong Zhang 5289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 5299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 5309566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,NULL,&inodes,NULL)); 5319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 532d4002b98SHong Zhang if (!inodes) { 533c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", 5349566063dSJacob Faibussowitsch rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);PetscCall(ierr); 535d4002b98SHong Zhang } else { 536c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", 5379566063dSJacob Faibussowitsch rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);PetscCall(ierr); 538d4002b98SHong Zhang } 5399566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A,MAT_LOCAL,&info)); 5409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5419566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B,MAT_LOCAL,&info)); 5429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5439566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 5469566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx,viewer)); 547d4002b98SHong Zhang PetscFunctionReturn(0); 548d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 549d4002b98SHong Zhang PetscInt inodecount,inodelimit,*inodes; 5509566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,&inodecount,&inodes,&inodelimit)); 551d4002b98SHong Zhang if (inodes) { 5529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n",inodecount,inodelimit)); 553d4002b98SHong Zhang } else { 5549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n")); 555d4002b98SHong Zhang } 556d4002b98SHong Zhang PetscFunctionReturn(0); 557d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 558d4002b98SHong Zhang PetscFunctionReturn(0); 559d4002b98SHong Zhang } 560d4002b98SHong Zhang } else if (isbinary) { 561d4002b98SHong Zhang if (size == 1) { 5629566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A,((PetscObject)mat)->name)); 5639566063dSJacob Faibussowitsch PetscCall(MatView(sell->A,viewer)); 564d4002b98SHong Zhang } else { 5659566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 566d4002b98SHong Zhang } 567d4002b98SHong Zhang PetscFunctionReturn(0); 568d4002b98SHong Zhang } else if (isdraw) { 569d4002b98SHong Zhang PetscDraw draw; 570d4002b98SHong Zhang PetscBool isnull; 5719566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 5729566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 573d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 574d4002b98SHong Zhang } 575d4002b98SHong Zhang 576d4002b98SHong Zhang { 577d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 578d4002b98SHong Zhang Mat A; 579d4002b98SHong Zhang Mat_SeqSELL *Aloc; 580d4002b98SHong Zhang PetscInt M=mat->rmap->N,N=mat->cmap->N,*acolidx,row,col,i,j; 581d4002b98SHong Zhang MatScalar *aval; 582d4002b98SHong Zhang PetscBool isnonzero; 583d4002b98SHong Zhang 5849566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 585dd400576SPatrick Sanan if (rank == 0) { 5869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 587d4002b98SHong Zhang } else { 5889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 589d4002b98SHong Zhang } 590d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 5919566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPISELL)); 5929566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,0,NULL,0,NULL)); 5939566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 5949566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 595d4002b98SHong Zhang 596d4002b98SHong Zhang /* copy over the A part */ 597d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->A->data; 598d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 599d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { /* loop over slices */ 600d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 601d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 602d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 603d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; /* i<<3 is the starting row of this slice */ 604d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6059566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 606d4002b98SHong Zhang } 607d4002b98SHong Zhang aval++; acolidx++; 608d4002b98SHong Zhang } 609d4002b98SHong Zhang } 610d4002b98SHong Zhang 611d4002b98SHong Zhang /* copy over the B part */ 612d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->B->data; 613d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 614d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { 615d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 616d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 617d4002b98SHong Zhang if (isnonzero) { 618d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; 619d4002b98SHong Zhang col = sell->garray[*acolidx]; 6209566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 621d4002b98SHong Zhang } 622d4002b98SHong Zhang aval++; acolidx++; 623d4002b98SHong Zhang } 624d4002b98SHong Zhang } 625d4002b98SHong Zhang 6269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 628d4002b98SHong Zhang /* 629d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 630d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 631d4002b98SHong Zhang */ 6329566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 633dd400576SPatrick Sanan if (rank == 0) { 6349566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL*)(A->data))->A,((PetscObject)mat)->name)); 6359566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL(((Mat_MPISELL*)(A->data))->A,sviewer)); 636d4002b98SHong Zhang } 6379566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6389566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 640d4002b98SHong Zhang } 641d4002b98SHong Zhang PetscFunctionReturn(0); 642d4002b98SHong Zhang } 643d4002b98SHong Zhang 644d4002b98SHong Zhang PetscErrorCode MatView_MPISELL(Mat mat,PetscViewer viewer) 645d4002b98SHong Zhang { 646d4002b98SHong Zhang PetscBool iascii,isdraw,issocket,isbinary; 647d4002b98SHong Zhang 648d4002b98SHong Zhang PetscFunctionBegin; 6499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 6519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 653d4002b98SHong Zhang if (iascii || isdraw || isbinary || issocket) { 6549566063dSJacob Faibussowitsch PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat,viewer)); 655d4002b98SHong Zhang } 656d4002b98SHong Zhang PetscFunctionReturn(0); 657d4002b98SHong Zhang } 658d4002b98SHong Zhang 659d4002b98SHong Zhang PetscErrorCode MatGetGhosts_MPISELL(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 660d4002b98SHong Zhang { 661d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 662d4002b98SHong Zhang 663d4002b98SHong Zhang PetscFunctionBegin; 6649566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B,NULL,nghosts)); 665d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 666d4002b98SHong Zhang PetscFunctionReturn(0); 667d4002b98SHong Zhang } 668d4002b98SHong Zhang 669d4002b98SHong Zhang PetscErrorCode MatGetInfo_MPISELL(Mat matin,MatInfoType flag,MatInfo *info) 670d4002b98SHong Zhang { 671d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 672d4002b98SHong Zhang Mat A=mat->A,B=mat->B; 6733966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 674d4002b98SHong Zhang 675d4002b98SHong Zhang PetscFunctionBegin; 676d4002b98SHong Zhang info->block_size = 1.0; 6779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 678d4002b98SHong Zhang 679d4002b98SHong Zhang isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 680d4002b98SHong Zhang isend[3] = info->memory; isend[4] = info->mallocs; 681d4002b98SHong Zhang 6829566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 683d4002b98SHong Zhang 684d4002b98SHong Zhang isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 685d4002b98SHong Zhang isend[3] += info->memory; isend[4] += info->mallocs; 686d4002b98SHong Zhang if (flag == MAT_LOCAL) { 687d4002b98SHong Zhang info->nz_used = isend[0]; 688d4002b98SHong Zhang info->nz_allocated = isend[1]; 689d4002b98SHong Zhang info->nz_unneeded = isend[2]; 690d4002b98SHong Zhang info->memory = isend[3]; 691d4002b98SHong Zhang info->mallocs = isend[4]; 692d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 6939566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 694d4002b98SHong Zhang 695d4002b98SHong Zhang info->nz_used = irecv[0]; 696d4002b98SHong Zhang info->nz_allocated = irecv[1]; 697d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 698d4002b98SHong Zhang info->memory = irecv[3]; 699d4002b98SHong Zhang info->mallocs = irecv[4]; 700d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7019566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 702d4002b98SHong Zhang 703d4002b98SHong Zhang info->nz_used = irecv[0]; 704d4002b98SHong Zhang info->nz_allocated = irecv[1]; 705d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 706d4002b98SHong Zhang info->memory = irecv[3]; 707d4002b98SHong Zhang info->mallocs = irecv[4]; 708d4002b98SHong Zhang } 709d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 710d4002b98SHong Zhang info->fill_ratio_needed = 0; 711d4002b98SHong Zhang info->factor_mallocs = 0; 712d4002b98SHong Zhang PetscFunctionReturn(0); 713d4002b98SHong Zhang } 714d4002b98SHong Zhang 715d4002b98SHong Zhang PetscErrorCode MatSetOption_MPISELL(Mat A,MatOption op,PetscBool flg) 716d4002b98SHong Zhang { 717d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 718d4002b98SHong Zhang 719d4002b98SHong Zhang PetscFunctionBegin; 720d4002b98SHong Zhang switch (op) { 721d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 722d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 723d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 724d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 725d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 726d4002b98SHong Zhang case MAT_USE_INODES: 727d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 728d4002b98SHong Zhang MatCheckPreallocated(A,1); 7299566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7309566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 731d4002b98SHong Zhang break; 732d4002b98SHong Zhang case MAT_ROW_ORIENTED: 733d4002b98SHong Zhang MatCheckPreallocated(A,1); 734d4002b98SHong Zhang a->roworiented = flg; 735d4002b98SHong Zhang 7369566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7379566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 738d4002b98SHong Zhang break; 7398c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 740071fcb05SBarry Smith case MAT_SORTED_FULL: 7419566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 742d4002b98SHong Zhang break; 743d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 744d4002b98SHong Zhang a->donotstash = flg; 745d4002b98SHong Zhang break; 746d4002b98SHong Zhang case MAT_SPD: 747d4002b98SHong Zhang A->spd_set = PETSC_TRUE; 748d4002b98SHong Zhang A->spd = flg; 749d4002b98SHong Zhang if (flg) { 750d4002b98SHong Zhang A->symmetric = PETSC_TRUE; 751d4002b98SHong Zhang A->structurally_symmetric = PETSC_TRUE; 752d4002b98SHong Zhang A->symmetric_set = PETSC_TRUE; 753d4002b98SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 754d4002b98SHong Zhang } 755d4002b98SHong Zhang break; 756d4002b98SHong Zhang case MAT_SYMMETRIC: 757d4002b98SHong Zhang MatCheckPreallocated(A,1); 7589566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 759d4002b98SHong Zhang break; 760d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 761d4002b98SHong Zhang MatCheckPreallocated(A,1); 7629566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 763d4002b98SHong Zhang break; 764d4002b98SHong Zhang case MAT_HERMITIAN: 765d4002b98SHong Zhang MatCheckPreallocated(A,1); 7669566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 767d4002b98SHong Zhang break; 768d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 769d4002b98SHong Zhang MatCheckPreallocated(A,1); 7709566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 771d4002b98SHong Zhang break; 772d4002b98SHong Zhang default: 77398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 774d4002b98SHong Zhang } 775d4002b98SHong Zhang PetscFunctionReturn(0); 776d4002b98SHong Zhang } 777d4002b98SHong Zhang 778d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_MPISELL(Mat mat,Vec ll,Vec rr) 779d4002b98SHong Zhang { 780d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 781d4002b98SHong Zhang Mat a=sell->A,b=sell->B; 782d4002b98SHong Zhang PetscInt s1,s2,s3; 783d4002b98SHong Zhang 784d4002b98SHong Zhang PetscFunctionBegin; 7859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 786d4002b98SHong Zhang if (rr) { 7879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 7882c71b3e2SJacob Faibussowitsch PetscCheckFalse(s1!=s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 789d4002b98SHong Zhang /* Overlap communication with computation. */ 7909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 791d4002b98SHong Zhang } 792d4002b98SHong Zhang if (ll) { 7939566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 7942c71b3e2SJacob Faibussowitsch PetscCheckFalse(s1!=s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 7959566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 796d4002b98SHong Zhang } 797d4002b98SHong Zhang /* scale the diagonal block */ 7989566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 799d4002b98SHong Zhang 800d4002b98SHong Zhang if (rr) { 801d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 8039566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,sell->lvec)); 804d4002b98SHong Zhang } 805d4002b98SHong Zhang PetscFunctionReturn(0); 806d4002b98SHong Zhang } 807d4002b98SHong Zhang 808d4002b98SHong Zhang PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 809d4002b98SHong Zhang { 810d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 811d4002b98SHong Zhang 812d4002b98SHong Zhang PetscFunctionBegin; 8139566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 814d4002b98SHong Zhang PetscFunctionReturn(0); 815d4002b98SHong Zhang } 816d4002b98SHong Zhang 817d4002b98SHong Zhang PetscErrorCode MatEqual_MPISELL(Mat A,Mat B,PetscBool *flag) 818d4002b98SHong Zhang { 819d4002b98SHong Zhang Mat_MPISELL *matB=(Mat_MPISELL*)B->data,*matA=(Mat_MPISELL*)A->data; 820d4002b98SHong Zhang Mat a,b,c,d; 821d4002b98SHong Zhang PetscBool flg; 822d4002b98SHong Zhang 823d4002b98SHong Zhang PetscFunctionBegin; 824d4002b98SHong Zhang a = matA->A; b = matA->B; 825d4002b98SHong Zhang c = matB->A; d = matB->B; 826d4002b98SHong Zhang 8279566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 828d4002b98SHong Zhang if (flg) { 8299566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 830d4002b98SHong Zhang } 8319566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 832d4002b98SHong Zhang PetscFunctionReturn(0); 833d4002b98SHong Zhang } 834d4002b98SHong Zhang 835d4002b98SHong Zhang PetscErrorCode MatCopy_MPISELL(Mat A,Mat B,MatStructure str) 836d4002b98SHong Zhang { 837d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 838d4002b98SHong Zhang Mat_MPISELL *b=(Mat_MPISELL*)B->data; 839d4002b98SHong Zhang 840d4002b98SHong Zhang PetscFunctionBegin; 841d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 842d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 843d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 844d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 845d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 846d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 847d4002b98SHong Zhang then copying the submatrices */ 8489566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 849d4002b98SHong Zhang } else { 8509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 8519566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 852d4002b98SHong Zhang } 853d4002b98SHong Zhang PetscFunctionReturn(0); 854d4002b98SHong Zhang } 855d4002b98SHong Zhang 856d4002b98SHong Zhang PetscErrorCode MatSetUp_MPISELL(Mat A) 857d4002b98SHong Zhang { 858d4002b98SHong Zhang PetscFunctionBegin; 8599566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 860d4002b98SHong Zhang PetscFunctionReturn(0); 861d4002b98SHong Zhang } 862d4002b98SHong Zhang 863d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat); 864d4002b98SHong Zhang 865d4002b98SHong Zhang PetscErrorCode MatConjugate_MPISELL(Mat mat) 866d4002b98SHong Zhang { 8675f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8685f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 869d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 870d4002b98SHong Zhang 8719566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8729566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8735f80ce2aSJacob Faibussowitsch } 874d4002b98SHong Zhang PetscFunctionReturn(0); 875d4002b98SHong Zhang } 876d4002b98SHong Zhang 877d4002b98SHong Zhang PetscErrorCode MatRealPart_MPISELL(Mat A) 878d4002b98SHong Zhang { 879d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 880d4002b98SHong Zhang 881d4002b98SHong Zhang PetscFunctionBegin; 8829566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 8839566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 884d4002b98SHong Zhang PetscFunctionReturn(0); 885d4002b98SHong Zhang } 886d4002b98SHong Zhang 887d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 888d4002b98SHong Zhang { 889d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 890d4002b98SHong Zhang 891d4002b98SHong Zhang PetscFunctionBegin; 8929566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 8939566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 894d4002b98SHong Zhang PetscFunctionReturn(0); 895d4002b98SHong Zhang } 896d4002b98SHong Zhang 897d4002b98SHong Zhang PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A,const PetscScalar **values) 898d4002b98SHong Zhang { 899d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 900d4002b98SHong Zhang 901d4002b98SHong Zhang PetscFunctionBegin; 9029566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 903d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 904d4002b98SHong Zhang PetscFunctionReturn(0); 905d4002b98SHong Zhang } 906d4002b98SHong Zhang 907d4002b98SHong Zhang static PetscErrorCode MatSetRandom_MPISELL(Mat x,PetscRandom rctx) 908d4002b98SHong Zhang { 909d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)x->data; 910d4002b98SHong Zhang 911d4002b98SHong Zhang PetscFunctionBegin; 9129566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A,rctx)); 9139566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B,rctx)); 9149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x,MAT_FINAL_ASSEMBLY)); 9159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x,MAT_FINAL_ASSEMBLY)); 916d4002b98SHong Zhang PetscFunctionReturn(0); 917d4002b98SHong Zhang } 918d4002b98SHong Zhang 919d4002b98SHong Zhang PetscErrorCode MatSetFromOptions_MPISELL(PetscOptionItems *PetscOptionsObject,Mat A) 920d4002b98SHong Zhang { 921d4002b98SHong Zhang PetscFunctionBegin; 9229566063dSJacob Faibussowitsch PetscCall(PetscOptionsHead(PetscOptionsObject,"MPISELL options")); 9239566063dSJacob Faibussowitsch PetscCall(PetscOptionsTail()); 924d4002b98SHong Zhang PetscFunctionReturn(0); 925d4002b98SHong Zhang } 926d4002b98SHong Zhang 927d4002b98SHong Zhang PetscErrorCode MatShift_MPISELL(Mat Y,PetscScalar a) 928d4002b98SHong Zhang { 929d4002b98SHong Zhang Mat_MPISELL *msell=(Mat_MPISELL*)Y->data; 930d4002b98SHong Zhang Mat_SeqSELL *sell=(Mat_SeqSELL*)msell->A->data; 931d4002b98SHong Zhang 932d4002b98SHong Zhang PetscFunctionBegin; 933d4002b98SHong Zhang if (!Y->preallocated) { 9349566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y,1,NULL,0,NULL)); 935d4002b98SHong Zhang } else if (!sell->nz) { 936d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9379566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A,1,NULL)); 938d4002b98SHong Zhang sell->nonew = nonew; 939d4002b98SHong Zhang } 9409566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 941d4002b98SHong Zhang PetscFunctionReturn(0); 942d4002b98SHong Zhang } 943d4002b98SHong Zhang 944d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_MPISELL(Mat A,PetscBool *missing,PetscInt *d) 945d4002b98SHong Zhang { 946d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 947d4002b98SHong Zhang 948d4002b98SHong Zhang PetscFunctionBegin; 9492c71b3e2SJacob Faibussowitsch PetscCheckFalse(A->rmap->n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 9509566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 951d4002b98SHong Zhang if (d) { 952d4002b98SHong Zhang PetscInt rstart; 9539566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 954d4002b98SHong Zhang *d += rstart; 955d4002b98SHong Zhang 956d4002b98SHong Zhang } 957d4002b98SHong Zhang PetscFunctionReturn(0); 958d4002b98SHong Zhang } 959d4002b98SHong Zhang 960d4002b98SHong Zhang PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A,Mat *a) 961d4002b98SHong Zhang { 962d4002b98SHong Zhang PetscFunctionBegin; 963d4002b98SHong Zhang *a = ((Mat_MPISELL*)A->data)->A; 964d4002b98SHong Zhang PetscFunctionReturn(0); 965d4002b98SHong Zhang } 966d4002b98SHong Zhang 967d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 968d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 969f4259b30SLisandro Dalcin NULL, 970f4259b30SLisandro Dalcin NULL, 971d4002b98SHong Zhang MatMult_MPISELL, 972d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 973d4002b98SHong Zhang MatMultTranspose_MPISELL, 974d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 975f4259b30SLisandro Dalcin NULL, 976f4259b30SLisandro Dalcin NULL, 977f4259b30SLisandro Dalcin NULL, 978f4259b30SLisandro Dalcin /*10*/ NULL, 979f4259b30SLisandro Dalcin NULL, 980f4259b30SLisandro Dalcin NULL, 981d4002b98SHong Zhang MatSOR_MPISELL, 982f4259b30SLisandro Dalcin NULL, 983d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 984d4002b98SHong Zhang MatEqual_MPISELL, 985d4002b98SHong Zhang MatGetDiagonal_MPISELL, 986d4002b98SHong Zhang MatDiagonalScale_MPISELL, 987f4259b30SLisandro Dalcin NULL, 988d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 989d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 990d4002b98SHong Zhang MatSetOption_MPISELL, 991d4002b98SHong Zhang MatZeroEntries_MPISELL, 992f4259b30SLisandro Dalcin /*24*/ NULL, 993f4259b30SLisandro Dalcin NULL, 994f4259b30SLisandro Dalcin NULL, 995f4259b30SLisandro Dalcin NULL, 996f4259b30SLisandro Dalcin NULL, 997d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 998f4259b30SLisandro Dalcin NULL, 999f4259b30SLisandro Dalcin NULL, 1000d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1001f4259b30SLisandro Dalcin NULL, 1002d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1003f4259b30SLisandro Dalcin NULL, 1004f4259b30SLisandro Dalcin NULL, 1005f4259b30SLisandro Dalcin NULL, 1006f4259b30SLisandro Dalcin NULL, 1007f4259b30SLisandro Dalcin /*39*/ NULL, 1008f4259b30SLisandro Dalcin NULL, 1009f4259b30SLisandro Dalcin NULL, 1010d4002b98SHong Zhang MatGetValues_MPISELL, 1011d4002b98SHong Zhang MatCopy_MPISELL, 1012f4259b30SLisandro Dalcin /*44*/ NULL, 1013d4002b98SHong Zhang MatScale_MPISELL, 1014d4002b98SHong Zhang MatShift_MPISELL, 1015d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1016f4259b30SLisandro Dalcin NULL, 1017d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1018f4259b30SLisandro Dalcin NULL, 1019f4259b30SLisandro Dalcin NULL, 1020f4259b30SLisandro Dalcin NULL, 1021f4259b30SLisandro Dalcin NULL, 1022d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1023f4259b30SLisandro Dalcin NULL, 1024d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1025f4259b30SLisandro Dalcin NULL, 1026f4259b30SLisandro Dalcin NULL, 1027f4259b30SLisandro Dalcin /*59*/ NULL, 1028d4002b98SHong Zhang MatDestroy_MPISELL, 1029d4002b98SHong Zhang MatView_MPISELL, 1030f4259b30SLisandro Dalcin NULL, 1031f4259b30SLisandro Dalcin NULL, 1032f4259b30SLisandro Dalcin /*64*/ NULL, 1033f4259b30SLisandro Dalcin NULL, 1034f4259b30SLisandro Dalcin NULL, 1035f4259b30SLisandro Dalcin NULL, 1036f4259b30SLisandro Dalcin NULL, 1037f4259b30SLisandro Dalcin /*69*/ NULL, 1038f4259b30SLisandro Dalcin NULL, 1039f4259b30SLisandro Dalcin NULL, 1040f4259b30SLisandro Dalcin NULL, 1041f4259b30SLisandro Dalcin NULL, 1042f4259b30SLisandro Dalcin NULL, 1043d4002b98SHong Zhang /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */ 1044d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1045f4259b30SLisandro Dalcin NULL, 1046f4259b30SLisandro Dalcin NULL, 1047f4259b30SLisandro Dalcin NULL, 1048f4259b30SLisandro Dalcin /*80*/ NULL, 1049f4259b30SLisandro Dalcin NULL, 1050f4259b30SLisandro Dalcin NULL, 1051f4259b30SLisandro Dalcin /*83*/ NULL, 1052f4259b30SLisandro Dalcin NULL, 1053f4259b30SLisandro Dalcin NULL, 1054f4259b30SLisandro Dalcin NULL, 1055f4259b30SLisandro Dalcin NULL, 1056f4259b30SLisandro Dalcin NULL, 1057f4259b30SLisandro Dalcin /*89*/ NULL, 1058f4259b30SLisandro Dalcin NULL, 1059f4259b30SLisandro Dalcin NULL, 1060f4259b30SLisandro Dalcin NULL, 1061f4259b30SLisandro Dalcin NULL, 1062f4259b30SLisandro Dalcin /*94*/ NULL, 1063f4259b30SLisandro Dalcin NULL, 1064f4259b30SLisandro Dalcin NULL, 1065f4259b30SLisandro Dalcin NULL, 1066f4259b30SLisandro Dalcin NULL, 1067f4259b30SLisandro Dalcin /*99*/ NULL, 1068f4259b30SLisandro Dalcin NULL, 1069f4259b30SLisandro Dalcin NULL, 1070d4002b98SHong Zhang MatConjugate_MPISELL, 1071f4259b30SLisandro Dalcin NULL, 1072f4259b30SLisandro Dalcin /*104*/NULL, 1073d4002b98SHong Zhang MatRealPart_MPISELL, 1074d4002b98SHong Zhang MatImaginaryPart_MPISELL, 1075f4259b30SLisandro Dalcin NULL, 1076f4259b30SLisandro Dalcin NULL, 1077f4259b30SLisandro Dalcin /*109*/NULL, 1078f4259b30SLisandro Dalcin NULL, 1079f4259b30SLisandro Dalcin NULL, 1080f4259b30SLisandro Dalcin NULL, 1081d4002b98SHong Zhang MatMissingDiagonal_MPISELL, 1082f4259b30SLisandro Dalcin /*114*/NULL, 1083f4259b30SLisandro Dalcin NULL, 1084d4002b98SHong Zhang MatGetGhosts_MPISELL, 1085f4259b30SLisandro Dalcin NULL, 1086f4259b30SLisandro Dalcin NULL, 1087f4259b30SLisandro Dalcin /*119*/NULL, 1088f4259b30SLisandro Dalcin NULL, 1089f4259b30SLisandro Dalcin NULL, 1090f4259b30SLisandro Dalcin NULL, 1091f4259b30SLisandro Dalcin NULL, 1092f4259b30SLisandro Dalcin /*124*/NULL, 1093f4259b30SLisandro Dalcin NULL, 1094d4002b98SHong Zhang MatInvertBlockDiagonal_MPISELL, 1095f4259b30SLisandro Dalcin NULL, 1096f4259b30SLisandro Dalcin NULL, 1097f4259b30SLisandro Dalcin /*129*/NULL, 1098f4259b30SLisandro Dalcin NULL, 1099f4259b30SLisandro Dalcin NULL, 1100f4259b30SLisandro Dalcin NULL, 1101f4259b30SLisandro Dalcin NULL, 1102f4259b30SLisandro Dalcin /*134*/NULL, 1103f4259b30SLisandro Dalcin NULL, 1104f4259b30SLisandro Dalcin NULL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin NULL, 1107f4259b30SLisandro Dalcin /*139*/NULL, 1108f4259b30SLisandro Dalcin NULL, 1109f4259b30SLisandro Dalcin NULL, 1110d4002b98SHong Zhang MatFDColoringSetUp_MPIXAIJ, 1111f4259b30SLisandro Dalcin NULL, 1112d70f29a3SPierre Jolivet /*144*/NULL, 1113d70f29a3SPierre Jolivet NULL, 1114d70f29a3SPierre Jolivet NULL, 1115d70f29a3SPierre Jolivet NULL 1116d4002b98SHong Zhang }; 1117d4002b98SHong Zhang 1118d4002b98SHong Zhang /* ----------------------------------------------------------------------------------------*/ 1119d4002b98SHong Zhang 1120d4002b98SHong Zhang PetscErrorCode MatStoreValues_MPISELL(Mat mat) 1121d4002b98SHong Zhang { 1122d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1123d4002b98SHong Zhang 1124d4002b98SHong Zhang PetscFunctionBegin; 11259566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 11269566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 1127d4002b98SHong Zhang PetscFunctionReturn(0); 1128d4002b98SHong Zhang } 1129d4002b98SHong Zhang 1130d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 1131d4002b98SHong Zhang { 1132d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1133d4002b98SHong Zhang 1134d4002b98SHong Zhang PetscFunctionBegin; 11359566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 11369566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 1137d4002b98SHong Zhang PetscFunctionReturn(0); 1138d4002b98SHong Zhang } 1139d4002b98SHong Zhang 1140d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[]) 1141d4002b98SHong Zhang { 1142d4002b98SHong Zhang Mat_MPISELL *b; 1143d4002b98SHong Zhang 1144d4002b98SHong Zhang PetscFunctionBegin; 11459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 11469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1147d4002b98SHong Zhang b = (Mat_MPISELL*)B->data; 1148d4002b98SHong Zhang 1149d4002b98SHong Zhang if (!B->preallocated) { 1150d4002b98SHong Zhang /* Explicitly create 2 MATSEQSELL matrices. */ 11519566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 11529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 11539566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A,B,B)); 11549566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQSELL)); 11559566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 11569566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 11579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N)); 11589566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B,B,B)); 11599566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQSELL)); 11609566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 1161d4002b98SHong Zhang } 1162d4002b98SHong Zhang 11639566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A,d_rlenmax,d_rlen)); 11649566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B,o_rlenmax,o_rlen)); 1165d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 1166d4002b98SHong Zhang B->was_assembled = PETSC_FALSE; 1167d4002b98SHong Zhang /* 1168d4002b98SHong Zhang critical for MatAssemblyEnd to work. 1169d4002b98SHong Zhang MatAssemblyBegin checks it to set up was_assembled 1170d4002b98SHong Zhang and MatAssemblyEnd checks was_assembled to determine whether to build garray 1171d4002b98SHong Zhang */ 1172d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1173d4002b98SHong Zhang PetscFunctionReturn(0); 1174d4002b98SHong Zhang } 1175d4002b98SHong Zhang 1176d4002b98SHong Zhang PetscErrorCode MatDuplicate_MPISELL(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1177d4002b98SHong Zhang { 1178d4002b98SHong Zhang Mat mat; 1179d4002b98SHong Zhang Mat_MPISELL *a,*oldmat=(Mat_MPISELL*)matin->data; 1180d4002b98SHong Zhang 1181d4002b98SHong Zhang PetscFunctionBegin; 1182f4259b30SLisandro Dalcin *newmat = NULL; 11839566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 11849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 11859566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat,matin,matin)); 11869566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 1187d4002b98SHong Zhang a = (Mat_MPISELL*)mat->data; 1188d4002b98SHong Zhang 1189d4002b98SHong Zhang mat->factortype = matin->factortype; 1190d4002b98SHong Zhang mat->assembled = PETSC_TRUE; 1191d4002b98SHong Zhang mat->insertmode = NOT_SET_VALUES; 1192d4002b98SHong Zhang mat->preallocated = PETSC_TRUE; 1193d4002b98SHong Zhang 1194d4002b98SHong Zhang a->size = oldmat->size; 1195d4002b98SHong Zhang a->rank = oldmat->rank; 1196d4002b98SHong Zhang a->donotstash = oldmat->donotstash; 1197d4002b98SHong Zhang a->roworiented = oldmat->roworiented; 1198f4259b30SLisandro Dalcin a->rowindices = NULL; 1199f4259b30SLisandro Dalcin a->rowvalues = NULL; 1200d4002b98SHong Zhang a->getrowactive = PETSC_FALSE; 1201d4002b98SHong Zhang 12029566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 12039566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 1204d4002b98SHong Zhang 1205d4002b98SHong Zhang if (oldmat->colmap) { 1206d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 12079566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 1208d4002b98SHong Zhang #else 12099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&a->colmap)); 12109566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N)*sizeof(PetscInt))); 12119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,mat->cmap->N)); 1212d4002b98SHong Zhang #endif 1213f4259b30SLisandro Dalcin } else a->colmap = NULL; 1214d4002b98SHong Zhang if (oldmat->garray) { 1215d4002b98SHong Zhang PetscInt len; 1216d4002b98SHong Zhang len = oldmat->B->cmap->n; 12179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len+1,&a->garray)); 12189566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 12199566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 1220f4259b30SLisandro Dalcin } else a->garray = NULL; 1221d4002b98SHong Zhang 12229566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 12239566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 12249566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 12259566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 12269566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 12279566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 12289566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 12299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 12309566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 1231d4002b98SHong Zhang *newmat = mat; 1232d4002b98SHong Zhang PetscFunctionReturn(0); 1233d4002b98SHong Zhang } 1234d4002b98SHong Zhang 1235d4002b98SHong Zhang /*@C 1236d4002b98SHong Zhang MatMPISELLSetPreallocation - Preallocates memory for a sparse parallel matrix in sell format. 1237d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 1238d4002b98SHong Zhang setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz). 1239d4002b98SHong Zhang 1240d083f849SBarry Smith Collective 1241d4002b98SHong Zhang 1242d4002b98SHong Zhang Input Parameters: 1243d4002b98SHong Zhang + B - the matrix 1244d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1245d4002b98SHong Zhang (same value is used for all local rows) 1246d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1247d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1248d4002b98SHong Zhang or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure. 1249d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1250d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1251d4002b98SHong Zhang the diagonal entry even if it is zero. 1252d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1253d4002b98SHong Zhang submatrix (same value is used for all local rows). 1254d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1255d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1256d4002b98SHong Zhang each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero 1257d4002b98SHong Zhang structure. The size of this array is equal to the number 1258d4002b98SHong Zhang of local rows, i.e 'm'. 1259d4002b98SHong Zhang 1260d4002b98SHong Zhang If the *_nnz parameter is given then the *_nz parameter is ignored 1261d4002b98SHong Zhang 1262d4002b98SHong Zhang The stored row and column indices begin with zero. 1263d4002b98SHong Zhang 1264d4002b98SHong Zhang The parallel matrix is partitioned such that the first m0 rows belong to 1265d4002b98SHong Zhang process 0, the next m1 rows belong to process 1, the next m2 rows belong 1266d4002b98SHong Zhang to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 1267d4002b98SHong Zhang 1268d4002b98SHong Zhang The DIAGONAL portion of the local submatrix of a processor can be defined 1269d4002b98SHong Zhang as the submatrix which is obtained by extraction the part corresponding to 1270d4002b98SHong Zhang the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 1271d4002b98SHong Zhang first row that belongs to the processor, r2 is the last row belonging to 1272d4002b98SHong Zhang the this processor, and c1-c2 is range of indices of the local part of a 1273d4002b98SHong Zhang vector suitable for applying the matrix to. This is an mxn matrix. In the 1274d4002b98SHong Zhang common case of a square matrix, the row and column ranges are the same and 1275d4002b98SHong Zhang the DIAGONAL part is also square. The remaining portion of the local 1276d4002b98SHong Zhang submatrix (mxN) constitute the OFF-DIAGONAL portion. 1277d4002b98SHong Zhang 1278d4002b98SHong Zhang If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored. 1279d4002b98SHong Zhang 1280d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 1281d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1282d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 1283d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 1284d4002b98SHong Zhang 1285d4002b98SHong Zhang Example usage: 1286d4002b98SHong Zhang 1287d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1288d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1289d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1290d4002b98SHong Zhang as follows: 1291d4002b98SHong Zhang 1292d4002b98SHong Zhang .vb 1293d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1294d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1295d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1296d4002b98SHong Zhang ------------------------------------- 1297d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1298d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1299d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1300d4002b98SHong Zhang ------------------------------------- 1301d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1302d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1303d4002b98SHong Zhang .ve 1304d4002b98SHong Zhang 1305d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1306d4002b98SHong Zhang 1307d4002b98SHong Zhang .vb 1308d4002b98SHong Zhang A B C 1309d4002b98SHong Zhang D E F 1310d4002b98SHong Zhang G H I 1311d4002b98SHong Zhang .ve 1312d4002b98SHong Zhang 1313d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1314d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1315d4002b98SHong Zhang 1316d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1317d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1318d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1319d4002b98SHong Zhang 1320d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1321d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1322d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1323d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1324d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1325d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1326d4002b98SHong Zhang 1327d4002b98SHong Zhang When d_nz, o_nz parameters are specified, d_nz storage elements are 1328d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_nz 1329d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1330d4002b98SHong Zhang One way to choose d_nz and o_nz is to use the max nonzerors per local 1331d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1332d4002b98SHong Zhang In this case, the values of d_nz,o_nz are: 1333d4002b98SHong Zhang .vb 1334d4002b98SHong Zhang proc0 : dnz = 2, o_nz = 2 1335d4002b98SHong Zhang proc1 : dnz = 3, o_nz = 2 1336d4002b98SHong Zhang proc2 : dnz = 1, o_nz = 4 1337d4002b98SHong Zhang .ve 1338d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1339d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1340d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1341d4002b98SHong Zhang 34 values. 1342d4002b98SHong Zhang 1343d4002b98SHong Zhang When d_nnz, o_nnz parameters are specified, the storage is specified 1344a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1345d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1346d4002b98SHong Zhang .vb 1347d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1348d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1349d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1350d4002b98SHong Zhang .ve 1351d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1352d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1353d4002b98SHong Zhang 1354d4002b98SHong Zhang Level: intermediate 1355d4002b98SHong Zhang 1356d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSeqSELL(), MatSetValues(), MatCreatesell(), 1357d4002b98SHong Zhang MATMPISELL, MatGetInfo(), PetscSplitOwnership() 1358d4002b98SHong Zhang @*/ 1359d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1360d4002b98SHong Zhang { 1361d4002b98SHong Zhang PetscFunctionBegin; 1362d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1363d4002b98SHong Zhang PetscValidType(B,1); 1364*cac4c232SBarry Smith PetscTryMethod(B,"MatMPISELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,d_nz,d_nnz,o_nz,o_nnz)); 1365d4002b98SHong Zhang PetscFunctionReturn(0); 1366d4002b98SHong Zhang } 1367d4002b98SHong Zhang 1368ed73aabaSBarry Smith /*MC 1369ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1370ed73aabaSBarry Smith based on the sliced Ellpack format 1371ed73aabaSBarry Smith 1372ed73aabaSBarry Smith Options Database Keys: 1373ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 1374ed73aabaSBarry Smith 1375ed73aabaSBarry Smith Level: beginner 1376ed73aabaSBarry Smith 1377ed73aabaSBarry Smith .seealso: MatCreateSell(), MATSEQSELL, MATSELL, MATSEQAIJ, MATAIJ, MATMPIAIJ 1378ed73aabaSBarry Smith M*/ 1379ed73aabaSBarry Smith 1380d4002b98SHong Zhang /*@C 1381d4002b98SHong Zhang MatCreateSELL - Creates a sparse parallel matrix in SELL format. 1382d4002b98SHong Zhang 1383d083f849SBarry Smith Collective 1384d4002b98SHong Zhang 1385d4002b98SHong Zhang Input Parameters: 1386d4002b98SHong Zhang + comm - MPI communicator 1387d4002b98SHong Zhang . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1388d4002b98SHong Zhang This value should be the same as the local size used in creating the 1389d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1390d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 1391d4002b98SHong Zhang x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 1392d4002b98SHong Zhang calculated if N is given) For square matrices n is almost always m. 1393d4002b98SHong Zhang . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1394d4002b98SHong Zhang . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1395d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1396d4002b98SHong Zhang (same value is used for all local rows) 1397d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1398d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1399d4002b98SHong Zhang or NULL, if d_rlenmax is used to specify the nonzero structure. 1400d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1401d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1402d4002b98SHong Zhang submatrix (same value is used for all local rows). 1403d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1404d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1405d4002b98SHong Zhang each row) or NULL, if o_rlenmax is used to specify the nonzero 1406d4002b98SHong Zhang structure. The size of this array is equal to the number 1407d4002b98SHong Zhang of local rows, i.e 'm'. 1408d4002b98SHong Zhang 1409d4002b98SHong Zhang Output Parameter: 1410d4002b98SHong Zhang . A - the matrix 1411d4002b98SHong Zhang 1412d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1413f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 1414d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 1415d4002b98SHong Zhang 1416d4002b98SHong Zhang Notes: 1417d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1418d4002b98SHong Zhang 1419d4002b98SHong Zhang m,n,M,N parameters specify the size of the matrix, and its partitioning across 1420d4002b98SHong Zhang processors, while d_rlenmax,d_rlen,o_rlenmax,o_rlen parameters specify the approximate 1421d4002b98SHong Zhang storage requirements for this matrix. 1422d4002b98SHong Zhang 1423d4002b98SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one 1424d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1425d4002b98SHong Zhang that argument. 1426d4002b98SHong Zhang 1427d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1428d4002b98SHong Zhang (possibly both). 1429d4002b98SHong Zhang 1430d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1431d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1432d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1433d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 1434d4002b98SHong Zhang values corresponding to [m x N] submatrix. 1435d4002b98SHong Zhang 1436d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1437d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 1438d4002b98SHong Zhang partition etc.. where n0,n1,n2... are the input parameter 'n'. 1439d4002b98SHong Zhang 1440d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 1441d4002b98SHong Zhang is the submatrix corresponding to the rows and columns m,n 1442d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1443d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1444d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1445d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1446d4002b98SHong Zhang illustrates this concept. 1447d4002b98SHong Zhang 1448d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1449d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1450d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1451d4002b98SHong Zhang local matrix (a rectangular submatrix). 1452d4002b98SHong Zhang 1453d4002b98SHong Zhang If o_rlen, d_rlen are specified, then o_rlenmax, and d_rlenmax are ignored. 1454d4002b98SHong Zhang 1455d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 1456d4002b98SHong Zhang type SEQSELL is returned. If a matrix of type MATMPISELL is desired for this 1457d4002b98SHong Zhang type of communicator, use the construction mechanism: 1458d4002b98SHong Zhang MatCreate(...,&A); MatSetType(A,MATMPISELL); MatSetSizes(A, m,n,M,N); MatMPISELLSetPreallocation(A,...); 1459d4002b98SHong Zhang 1460d4002b98SHong Zhang Options Database Keys: 1461d4002b98SHong Zhang - -mat_sell_oneindex - Internally use indexing starting at 1 1462d4002b98SHong Zhang rather than 0. Note that when calling MatSetValues(), 1463d4002b98SHong Zhang the user still MUST index entries starting at 0! 1464d4002b98SHong Zhang 1465d4002b98SHong Zhang Example usage: 1466d4002b98SHong Zhang 1467d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1468d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1469d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1470d4002b98SHong Zhang as follows: 1471d4002b98SHong Zhang 1472d4002b98SHong Zhang .vb 1473d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1474d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1475d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1476d4002b98SHong Zhang ------------------------------------- 1477d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1478d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1479d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1480d4002b98SHong Zhang ------------------------------------- 1481d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1482d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1483d4002b98SHong Zhang .ve 1484d4002b98SHong Zhang 1485d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1486d4002b98SHong Zhang 1487d4002b98SHong Zhang .vb 1488d4002b98SHong Zhang A B C 1489d4002b98SHong Zhang D E F 1490d4002b98SHong Zhang G H I 1491d4002b98SHong Zhang .ve 1492d4002b98SHong Zhang 1493d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1494d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1495d4002b98SHong Zhang 1496d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1497d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1498d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1499d4002b98SHong Zhang 1500d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1501d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1502d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1503d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1504d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1505d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1506d4002b98SHong Zhang 1507d4002b98SHong Zhang When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 1508d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_rlenmax 1509d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1510d4002b98SHong Zhang One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local 1511d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1512d4002b98SHong Zhang In this case, the values of d_rlenmax,o_rlenmax are: 1513d4002b98SHong Zhang .vb 1514d4002b98SHong Zhang proc0 : d_rlenmax = 2, o_rlenmax = 2 1515d4002b98SHong Zhang proc1 : d_rlenmax = 3, o_rlenmax = 2 1516d4002b98SHong Zhang proc2 : d_rlenmax = 1, o_rlenmax = 4 1517d4002b98SHong Zhang .ve 1518d4002b98SHong Zhang We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 1519d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1520d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1521d4002b98SHong Zhang 34 values. 1522d4002b98SHong Zhang 1523d4002b98SHong Zhang When d_rlen, o_rlen parameters are specified, the storage is specified 1524a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1525d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1526d4002b98SHong Zhang .vb 1527d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1528d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1529d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1530d4002b98SHong Zhang .ve 1531d4002b98SHong Zhang Here the space allocated is still 37 though there are 34 nonzeros because 1532d4002b98SHong Zhang the allocation is always done according to rlenmax. 1533d4002b98SHong Zhang 1534d4002b98SHong Zhang Level: intermediate 1535d4002b98SHong Zhang 1536d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSeqSELL(), MatSetValues(), MatMPISELLSetPreallocation(), MatMPISELLSetPreallocationSELL(), 1537d4002b98SHong Zhang MATMPISELL, MatCreateMPISELLWithArrays() 1538d4002b98SHong Zhang @*/ 1539d4002b98SHong Zhang PetscErrorCode MatCreateSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[],Mat *A) 1540d4002b98SHong Zhang { 1541d4002b98SHong Zhang PetscMPIInt size; 1542d4002b98SHong Zhang 1543d4002b98SHong Zhang PetscFunctionBegin; 15449566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 15459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 15469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 1547d4002b98SHong Zhang if (size > 1) { 15489566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPISELL)); 15499566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A,d_rlenmax,d_rlen,o_rlenmax,o_rlen)); 1550d4002b98SHong Zhang } else { 15519566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSELL)); 15529566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A,d_rlenmax,d_rlen)); 1553d4002b98SHong Zhang } 1554d4002b98SHong Zhang PetscFunctionReturn(0); 1555d4002b98SHong Zhang } 1556d4002b98SHong Zhang 1557d4002b98SHong Zhang PetscErrorCode MatMPISELLGetSeqSELL(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 1558d4002b98SHong Zhang { 1559d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1560d4002b98SHong Zhang PetscBool flg; 1561d4002b98SHong Zhang 1562d4002b98SHong Zhang PetscFunctionBegin; 15639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&flg)); 156428b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPISELL matrix as input"); 1565d4002b98SHong Zhang if (Ad) *Ad = a->A; 1566d4002b98SHong Zhang if (Ao) *Ao = a->B; 1567d4002b98SHong Zhang if (colmap) *colmap = a->garray; 1568d4002b98SHong Zhang PetscFunctionReturn(0); 1569d4002b98SHong Zhang } 1570d4002b98SHong Zhang 1571d4002b98SHong Zhang /*@C 1572d4002b98SHong Zhang MatMPISELLGetLocalMatCondensed - Creates a SeqSELL matrix from an MATMPISELL matrix by taking all its local rows and NON-ZERO columns 1573d4002b98SHong Zhang 1574d4002b98SHong Zhang Not Collective 1575d4002b98SHong Zhang 1576d4002b98SHong Zhang Input Parameters: 1577d4002b98SHong Zhang + A - the matrix 1578d4002b98SHong Zhang . scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 1579d4002b98SHong Zhang - row, col - index sets of rows and columns to extract (or NULL) 1580d4002b98SHong Zhang 1581d4002b98SHong Zhang Output Parameter: 1582d4002b98SHong Zhang . A_loc - the local sequential matrix generated 1583d4002b98SHong Zhang 1584d4002b98SHong Zhang Level: developer 1585d4002b98SHong Zhang 1586d4002b98SHong Zhang .seealso: MatGetOwnershipRange(), MatMPISELLGetLocalMat() 1587d4002b98SHong Zhang 1588d4002b98SHong Zhang @*/ 1589d4002b98SHong Zhang PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc) 1590d4002b98SHong Zhang { 1591d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1592d4002b98SHong Zhang PetscInt i,start,end,ncols,nzA,nzB,*cmap,imark,*idx; 1593d4002b98SHong Zhang IS isrowa,iscola; 1594d4002b98SHong Zhang Mat *aloc; 1595d4002b98SHong Zhang PetscBool match; 1596d4002b98SHong Zhang 1597d4002b98SHong Zhang PetscFunctionBegin; 15989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&match)); 159928b400f6SJacob Faibussowitsch PetscCheck(match,PetscObjectComm((PetscObject)A), PETSC_ERR_SUP,"Requires MATMPISELL matrix as input"); 16009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed,A,0,0,0)); 1601d4002b98SHong Zhang if (!row) { 1602d4002b98SHong Zhang start = A->rmap->rstart; end = A->rmap->rend; 16039566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa)); 1604d4002b98SHong Zhang } else { 1605d4002b98SHong Zhang isrowa = *row; 1606d4002b98SHong Zhang } 1607d4002b98SHong Zhang if (!col) { 1608d4002b98SHong Zhang start = A->cmap->rstart; 1609d4002b98SHong Zhang cmap = a->garray; 1610d4002b98SHong Zhang nzA = a->A->cmap->n; 1611d4002b98SHong Zhang nzB = a->B->cmap->n; 16129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA+nzB, &idx)); 1613d4002b98SHong Zhang ncols = 0; 1614d4002b98SHong Zhang for (i=0; i<nzB; i++) { 1615d4002b98SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 1616d4002b98SHong Zhang else break; 1617d4002b98SHong Zhang } 1618d4002b98SHong Zhang imark = i; 1619d4002b98SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; 1620d4002b98SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; 16219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&iscola)); 1622d4002b98SHong Zhang } else { 1623d4002b98SHong Zhang iscola = *col; 1624d4002b98SHong Zhang } 1625d4002b98SHong Zhang if (scall != MAT_INITIAL_MATRIX) { 16269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1,&aloc)); 1627d4002b98SHong Zhang aloc[0] = *A_loc; 1628d4002b98SHong Zhang } 16299566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A,1,&isrowa,&iscola,scall,&aloc)); 1630d4002b98SHong Zhang *A_loc = aloc[0]; 16319566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1632d4002b98SHong Zhang if (!row) { 16339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowa)); 1634d4002b98SHong Zhang } 1635d4002b98SHong Zhang if (!col) { 16369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscola)); 1637d4002b98SHong Zhang } 16389566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed,A,0,0,0)); 1639d4002b98SHong Zhang PetscFunctionReturn(0); 1640d4002b98SHong Zhang } 1641d4002b98SHong Zhang 1642d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1643d4002b98SHong Zhang 1644d4002b98SHong Zhang PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1645d4002b98SHong Zhang { 1646d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1647d4002b98SHong Zhang Mat B; 1648d4002b98SHong Zhang Mat_MPIAIJ *b; 1649d4002b98SHong Zhang 1650d4002b98SHong Zhang PetscFunctionBegin; 165128b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1652d4002b98SHong Zhang 165394a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 165494a8b381SRichard Tran Mills B = *newmat; 165594a8b381SRichard Tran Mills } else { 16569566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 16579566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 16589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 16599566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 16609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 16619566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 166294a8b381SRichard Tran Mills } 1663d4002b98SHong Zhang b = (Mat_MPIAIJ*) B->data; 166494a8b381SRichard Tran Mills 166594a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16669566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16679566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 166894a8b381SRichard Tran Mills } else { 16699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16709566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16719566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16729566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16739566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 16759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 16769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 167894a8b381SRichard Tran Mills } 1679d4002b98SHong Zhang 1680d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16819566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1682d4002b98SHong Zhang } else { 1683d4002b98SHong Zhang *newmat = B; 1684d4002b98SHong Zhang } 1685d4002b98SHong Zhang PetscFunctionReturn(0); 1686d4002b98SHong Zhang } 1687d4002b98SHong Zhang 1688d4002b98SHong Zhang PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1689d4002b98SHong Zhang { 1690d4002b98SHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 1691d4002b98SHong Zhang Mat B; 1692d4002b98SHong Zhang Mat_MPISELL *b; 1693d4002b98SHong Zhang 1694d4002b98SHong Zhang PetscFunctionBegin; 169528b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1696d4002b98SHong Zhang 169794a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 169894a8b381SRichard Tran Mills B = *newmat; 169994a8b381SRichard Tran Mills } else { 17009566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 17019566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPISELL)); 17029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 17039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 17049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 17059566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 170694a8b381SRichard Tran Mills } 1707d4002b98SHong Zhang b = (Mat_MPISELL*) B->data; 170894a8b381SRichard Tran Mills 170994a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17109566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17119566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 171294a8b381SRichard Tran Mills } else { 17139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17159566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(A)); 17169566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17179566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17189566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 17199566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 17209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 17219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 172294a8b381SRichard Tran Mills } 1723d4002b98SHong Zhang 1724d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17259566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1726d4002b98SHong Zhang } else { 1727d4002b98SHong Zhang *newmat = B; 1728d4002b98SHong Zhang } 1729d4002b98SHong Zhang PetscFunctionReturn(0); 1730d4002b98SHong Zhang } 1731d4002b98SHong Zhang 1732d4002b98SHong Zhang PetscErrorCode MatSOR_MPISELL(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1733d4002b98SHong Zhang { 1734d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 1735f4259b30SLisandro Dalcin Vec bb1=NULL; 1736d4002b98SHong Zhang 1737d4002b98SHong Zhang PetscFunctionBegin; 1738d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1740d4002b98SHong Zhang PetscFunctionReturn(0); 1741d4002b98SHong Zhang } 1742d4002b98SHong Zhang 1743d4002b98SHong Zhang if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) { 17449566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 1745d4002b98SHong Zhang } 1746d4002b98SHong Zhang 1747d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1748d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1750d4002b98SHong Zhang its--; 1751d4002b98SHong Zhang } 1752d4002b98SHong Zhang 1753d4002b98SHong Zhang while (its--) { 17549566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17559566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1756d4002b98SHong Zhang 1757d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17589566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17599566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1760d4002b98SHong Zhang 1761d4002b98SHong Zhang /* local sweep */ 17629566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 1763d4002b98SHong Zhang } 1764d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1765d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1767d4002b98SHong Zhang its--; 1768d4002b98SHong Zhang } 1769d4002b98SHong Zhang while (its--) { 17709566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17719566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1772d4002b98SHong Zhang 1773d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17749566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17759566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1776d4002b98SHong Zhang 1777d4002b98SHong Zhang /* local sweep */ 17789566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 1779d4002b98SHong Zhang } 1780d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1781d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17829566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1783d4002b98SHong Zhang its--; 1784d4002b98SHong Zhang } 1785d4002b98SHong Zhang while (its--) { 17869566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17879566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1788d4002b98SHong Zhang 1789d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17909566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17919566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1792d4002b98SHong Zhang 1793d4002b98SHong Zhang /* local sweep */ 17949566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 1795d4002b98SHong Zhang } 1796d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel SOR not supported"); 1797d4002b98SHong Zhang 17989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1799d4002b98SHong Zhang 1800d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 1801d4002b98SHong Zhang PetscFunctionReturn(0); 1802d4002b98SHong Zhang } 1803d4002b98SHong Zhang 1804d4002b98SHong Zhang /*MC 1805d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1806d4002b98SHong Zhang 1807d4002b98SHong Zhang Options Database Keys: 1808d4002b98SHong Zhang . -mat_type MPISELL - sets the matrix type to "MPISELL" during a call to MatSetFromOptions() 1809d4002b98SHong Zhang 1810d4002b98SHong Zhang Level: beginner 1811d4002b98SHong Zhang 1812d4002b98SHong Zhang .seealso: MatCreateSELL() 1813d4002b98SHong Zhang M*/ 1814d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1815d4002b98SHong Zhang { 1816d4002b98SHong Zhang Mat_MPISELL *b; 1817d4002b98SHong Zhang PetscMPIInt size; 1818d4002b98SHong Zhang 1819d4002b98SHong Zhang PetscFunctionBegin; 18209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 18219566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 1822d4002b98SHong Zhang B->data = (void*)b; 18239566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 1824d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1825d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1826d4002b98SHong Zhang b->size = size; 18279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 1828d4002b98SHong Zhang /* build cache for off array entries formed */ 18299566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 1830d4002b98SHong Zhang 1831d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1832f4259b30SLisandro Dalcin b->colmap = NULL; 1833f4259b30SLisandro Dalcin b->garray = NULL; 1834d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1835d4002b98SHong Zhang 1836d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1837d4002b98SHong Zhang b->lvec = NULL; 1838d4002b98SHong Zhang b->Mvctx = NULL; 1839d4002b98SHong Zhang 1840d4002b98SHong Zhang /* stuff for MatGetRow() */ 1841f4259b30SLisandro Dalcin b->rowindices = NULL; 1842f4259b30SLisandro Dalcin b->rowvalues = NULL; 1843d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1844d4002b98SHong Zhang 18459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISELL)); 18469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISELL)); 18479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_MPISELL)); 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISELLSetPreallocation_C",MatMPISELLSetPreallocation_MPISELL)); 18499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisell_mpiaij_C",MatConvert_MPISELL_MPIAIJ)); 18509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPISELL)); 18519566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISELL)); 1852d4002b98SHong Zhang PetscFunctionReturn(0); 1853d4002b98SHong Zhang } 1854