1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/ 3d4002b98SHong Zhang #include <petsc/private/vecimpl.h> 4d4002b98SHong Zhang #include <petsc/private/isimpl.h> 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petscsf.h> 7d4002b98SHong Zhang 8d4002b98SHong Zhang /*MC 9d4002b98SHong Zhang MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 10d4002b98SHong Zhang 11d4002b98SHong Zhang This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 12d4002b98SHong Zhang and MATMPISELL otherwise. As a result, for single process communicators, 13d4002b98SHong Zhang MatSeqSELLSetPreallocation is supported, and similarly MatMPISELLSetPreallocation is supported 14d4002b98SHong Zhang for communicators controlling multiple processes. It is recommended that you call both of 15d4002b98SHong Zhang the above preallocation routines for simplicity. 16d4002b98SHong Zhang 17d4002b98SHong Zhang Options Database Keys: 18d4002b98SHong Zhang . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 19d4002b98SHong Zhang 20d4002b98SHong Zhang Level: beginner 21d4002b98SHong Zhang 22d4002b98SHong Zhang .seealso: MatCreateSELL(), MatCreateSeqSELL(), MATSEQSELL, MATMPISELL 23d4002b98SHong Zhang M*/ 24d4002b98SHong Zhang 25d4002b98SHong Zhang PetscErrorCode MatDiagonalSet_MPISELL(Mat Y,Vec D,InsertMode is) 26d4002b98SHong Zhang { 27d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)Y->data; 28d4002b98SHong Zhang 29d4002b98SHong Zhang PetscFunctionBegin; 30d4002b98SHong Zhang if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) { 319566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(sell->A,D,is)); 32d4002b98SHong Zhang } else { 339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y,D,is)); 34d4002b98SHong Zhang } 35d4002b98SHong Zhang PetscFunctionReturn(0); 36d4002b98SHong Zhang } 37d4002b98SHong Zhang 38d4002b98SHong Zhang /* 39d4002b98SHong Zhang Local utility routine that creates a mapping from the global column 40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local 41d4002b98SHong Zhang storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor 43d4002b98SHong Zhang has an order N integer array but is fast to acess. 44d4002b98SHong Zhang */ 45d4002b98SHong Zhang PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat) 46d4002b98SHong Zhang { 47d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 48d4002b98SHong Zhang PetscInt n=sell->B->cmap->n,i; 49d4002b98SHong Zhang 50d4002b98SHong Zhang PetscFunctionBegin; 5128b400f6SJacob Faibussowitsch PetscCheck(sell->garray,PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPISELL Matrix was assembled but is missing garray"); 52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 539566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(n,mat->cmap->N+1,&sell->colmap)); 54d4002b98SHong Zhang for (i=0; i<n; i++) { 559566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(sell->colmap,sell->garray[i]+1,i+1,INSERT_VALUES)); 56d4002b98SHong Zhang } 57d4002b98SHong Zhang #else 589566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N+1,&sell->colmap)); 599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N+1)*sizeof(PetscInt))); 60d4002b98SHong Zhang for (i=0; i<n; i++) sell->colmap[sell->garray[i]] = i+1; 61d4002b98SHong Zhang #endif 62d4002b98SHong Zhang PetscFunctionReturn(0); 63d4002b98SHong Zhang } 64d4002b98SHong Zhang 65d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row,col,value,addv,orow,ocol) \ 66d4002b98SHong Zhang { \ 67d4002b98SHong Zhang if (col <= lastcol1) low1 = 0; \ 68d4002b98SHong Zhang else high1 = nrow1; \ 69d4002b98SHong Zhang lastcol1 = col; \ 70d4002b98SHong Zhang while (high1-low1 > 5) { \ 71d4002b98SHong Zhang t = (low1+high1)/2; \ 72d4002b98SHong Zhang if (*(cp1+8*t) > col) high1 = t; \ 73d4002b98SHong Zhang else low1 = t; \ 74d4002b98SHong Zhang } \ 75d4002b98SHong Zhang for (_i=low1; _i<high1; _i++) { \ 76d4002b98SHong Zhang if (*(cp1+8*_i) > col) break; \ 77d4002b98SHong Zhang if (*(cp1+8*_i) == col) { \ 78d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp1+8*_i) += value; \ 79d4002b98SHong Zhang else *(vp1+8*_i) = value; \ 80d4002b98SHong Zhang goto a_noinsert; \ 81d4002b98SHong Zhang } \ 82d4002b98SHong Zhang } \ 83d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low1 = 0; high1 = nrow1;goto a_noinsert;} \ 84d4002b98SHong Zhang if (nonew == 1) {low1 = 0; high1 = nrow1; goto a_noinsert;} \ 8508401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 86d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,am,1,nrow1,a->sliidx,row/8,row,col,a->colidx,a->val,cp1,vp1,nonew,MatScalar); \ 87d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 88d4002b98SHong Zhang for (ii=nrow1-1; ii>=_i; ii--) { \ 89d4002b98SHong Zhang *(cp1+8*(ii+1)) = *(cp1+8*ii); \ 90d4002b98SHong Zhang *(vp1+8*(ii+1)) = *(vp1+8*ii); \ 91d4002b98SHong Zhang } \ 92d4002b98SHong Zhang *(cp1+8*_i) = col; \ 93d4002b98SHong Zhang *(vp1+8*_i) = value; \ 94d4002b98SHong Zhang a->nz++; nrow1++; A->nonzerostate++; \ 95d4002b98SHong Zhang a_noinsert: ; \ 96d4002b98SHong Zhang a->rlen[row] = nrow1; \ 97d4002b98SHong Zhang } 98d4002b98SHong Zhang 99d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row,col,value,addv,orow,ocol) \ 100d4002b98SHong Zhang { \ 101d4002b98SHong Zhang if (col <= lastcol2) low2 = 0; \ 102d4002b98SHong Zhang else high2 = nrow2; \ 103d4002b98SHong Zhang lastcol2 = col; \ 104d4002b98SHong Zhang while (high2-low2 > 5) { \ 105d4002b98SHong Zhang t = (low2+high2)/2; \ 106d4002b98SHong Zhang if (*(cp2+8*t) > col) high2 = t; \ 107d4002b98SHong Zhang else low2 = t; \ 108d4002b98SHong Zhang } \ 109d4002b98SHong Zhang for (_i=low2; _i<high2; _i++) { \ 110d4002b98SHong Zhang if (*(cp2+8*_i) > col) break; \ 111d4002b98SHong Zhang if (*(cp2+8*_i) == col) { \ 112d4002b98SHong Zhang if (addv == ADD_VALUES) *(vp2+8*_i) += value; \ 113d4002b98SHong Zhang else *(vp2+8*_i) = value; \ 114d4002b98SHong Zhang goto b_noinsert; \ 115d4002b98SHong Zhang } \ 116d4002b98SHong Zhang } \ 117d4002b98SHong Zhang if (value == 0.0 && ignorezeroentries) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 118d4002b98SHong Zhang if (nonew == 1) {low2 = 0; high2 = nrow2; goto b_noinsert;} \ 11908401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 120d4002b98SHong Zhang MatSeqXSELLReallocateSELL(B,bm,1,nrow2,b->sliidx,row/8,row,col,b->colidx,b->val,cp2,vp2,nonew,MatScalar); \ 121d4002b98SHong Zhang /* shift up all the later entries in this row */ \ 122d4002b98SHong Zhang for (ii=nrow2-1; ii>=_i; ii--) { \ 123d4002b98SHong Zhang *(cp2+8*(ii+1)) = *(cp2+8*ii); \ 124d4002b98SHong Zhang *(vp2+8*(ii+1)) = *(vp2+8*ii); \ 125d4002b98SHong Zhang } \ 126d4002b98SHong Zhang *(cp2+8*_i) = col; \ 127d4002b98SHong Zhang *(vp2+8*_i) = value; \ 128d4002b98SHong Zhang b->nz++; nrow2++; B->nonzerostate++; \ 129d4002b98SHong Zhang b_noinsert: ; \ 130d4002b98SHong Zhang b->rlen[row] = nrow2; \ 131d4002b98SHong Zhang } 132d4002b98SHong Zhang 133d4002b98SHong Zhang PetscErrorCode MatSetValues_MPISELL(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 134d4002b98SHong Zhang { 135d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 136d4002b98SHong Zhang PetscScalar value; 137d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend,shift1,shift2; 138d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 139d4002b98SHong Zhang PetscBool roworiented=sell->roworiented; 140d4002b98SHong Zhang 141d4002b98SHong Zhang /* Some Variables required in the macro */ 142d4002b98SHong Zhang Mat A=sell->A; 143d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 144d4002b98SHong Zhang PetscBool ignorezeroentries=a->ignorezeroentries,found; 145d4002b98SHong Zhang Mat B=sell->B; 146d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 147d4002b98SHong Zhang PetscInt *cp1,*cp2,ii,_i,nrow1,nrow2,low1,high1,low2,high2,t,lastcol1,lastcol2; 148d4002b98SHong Zhang MatScalar *vp1,*vp2; 149d4002b98SHong Zhang 150d4002b98SHong Zhang PetscFunctionBegin; 151d4002b98SHong Zhang for (i=0; i<m; i++) { 152d4002b98SHong Zhang if (im[i] < 0) continue; 1536bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 154d4002b98SHong Zhang if (im[i] >= rstart && im[i] < rend) { 155d4002b98SHong Zhang row = im[i] - rstart; 156d4002b98SHong Zhang lastcol1 = -1; 157d4002b98SHong Zhang shift1 = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 158d4002b98SHong Zhang cp1 = a->colidx+shift1; 159d4002b98SHong Zhang vp1 = a->val+shift1; 160d4002b98SHong Zhang nrow1 = a->rlen[row]; 161d4002b98SHong Zhang low1 = 0; 162d4002b98SHong Zhang high1 = nrow1; 163d4002b98SHong Zhang lastcol2 = -1; 164d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 165d4002b98SHong Zhang cp2 = b->colidx+shift2; 166d4002b98SHong Zhang vp2 = b->val+shift2; 167d4002b98SHong Zhang nrow2 = b->rlen[row]; 168d4002b98SHong Zhang low2 = 0; 169d4002b98SHong Zhang high2 = nrow2; 170d4002b98SHong Zhang 171d4002b98SHong Zhang for (j=0; j<n; j++) { 172d4002b98SHong Zhang if (roworiented) value = v[i*n+j]; 173d4002b98SHong Zhang else value = v[i+j*m]; 174d4002b98SHong Zhang if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue; 175d4002b98SHong Zhang if (in[j] >= cstart && in[j] < cend) { 176d4002b98SHong Zhang col = in[j] - cstart; 177d4002b98SHong Zhang MatSetValue_SeqSELL_Private(A,row,col,value,addv,im[i],in[j],cp1,vp1,lastcol1,low1,high1); /* set one value */ 178d4002b98SHong Zhang } else if (in[j] < 0) continue; 1796bdcaf15SBarry Smith else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 180d4002b98SHong Zhang else { 181d4002b98SHong Zhang if (mat->was_assembled) { 182d4002b98SHong Zhang if (!sell->colmap) { 1839566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 184d4002b98SHong Zhang } 185d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 1869566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,in[j]+1,&col)); 187d4002b98SHong Zhang col--; 188d4002b98SHong Zhang #else 189d4002b98SHong Zhang col = sell->colmap[in[j]] - 1; 190d4002b98SHong Zhang #endif 191d4002b98SHong Zhang if (col < 0 && !((Mat_SeqSELL*)(sell->B->data))->nonew) { 1929566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(mat)); 193d4002b98SHong Zhang col = in[j]; 194d4002b98SHong Zhang /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */ 195d4002b98SHong Zhang B = sell->B; 196d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 197d4002b98SHong Zhang shift2 = b->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 198d4002b98SHong Zhang cp2 = b->colidx+shift2; 199d4002b98SHong Zhang vp2 = b->val+shift2; 200d4002b98SHong Zhang nrow2 = b->rlen[row]; 201d4002b98SHong Zhang low2 = 0; 202d4002b98SHong Zhang high2 = nrow2; 20308401ef6SPierre Jolivet } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 204d4002b98SHong Zhang } else col = in[j]; 205d4002b98SHong Zhang MatSetValue_SeqSELL_Private(B,row,col,value,addv,im[i],in[j],cp2,vp2,lastcol2,low2,high2); /* set one value */ 206d4002b98SHong Zhang } 207d4002b98SHong Zhang } 208d4002b98SHong Zhang } else { 20928b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 210d4002b98SHong Zhang if (!sell->donotstash) { 211d4002b98SHong Zhang mat->assembled = PETSC_FALSE; 212d4002b98SHong Zhang if (roworiented) { 2139566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 214d4002b98SHong Zhang } else { 2159566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,(PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 216d4002b98SHong Zhang } 217d4002b98SHong Zhang } 218d4002b98SHong Zhang } 219d4002b98SHong Zhang } 220d4002b98SHong Zhang PetscFunctionReturn(0); 221d4002b98SHong Zhang } 222d4002b98SHong Zhang 223d4002b98SHong Zhang PetscErrorCode MatGetValues_MPISELL(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 224d4002b98SHong Zhang { 225d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 226d4002b98SHong Zhang PetscInt i,j,rstart=mat->rmap->rstart,rend=mat->rmap->rend; 227d4002b98SHong Zhang PetscInt cstart=mat->cmap->rstart,cend=mat->cmap->rend,row,col; 228d4002b98SHong Zhang 229d4002b98SHong Zhang PetscFunctionBegin; 230d4002b98SHong Zhang for (i=0; i<m; i++) { 23154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 23254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 233d4002b98SHong Zhang if (idxm[i] >= rstart && idxm[i] < rend) { 234d4002b98SHong Zhang row = idxm[i] - rstart; 235d4002b98SHong Zhang for (j=0; j<n; j++) { 23654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 23754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 238d4002b98SHong Zhang if (idxn[j] >= cstart && idxn[j] < cend) { 239d4002b98SHong Zhang col = idxn[j] - cstart; 2409566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->A,1,&row,1,&col,v+i*n+j)); 241d4002b98SHong Zhang } else { 242d4002b98SHong Zhang if (!sell->colmap) { 2439566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPISELL_Private(mat)); 244d4002b98SHong Zhang } 245d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 2469566063dSJacob Faibussowitsch PetscCall(PetscTableFind(sell->colmap,idxn[j]+1,&col)); 247d4002b98SHong Zhang col--; 248d4002b98SHong Zhang #else 249d4002b98SHong Zhang col = sell->colmap[idxn[j]] - 1; 250d4002b98SHong Zhang #endif 251d4002b98SHong Zhang if ((col < 0) || (sell->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 252d4002b98SHong Zhang else { 2539566063dSJacob Faibussowitsch PetscCall(MatGetValues(sell->B,1,&row,1,&col,v+i*n+j)); 254d4002b98SHong Zhang } 255d4002b98SHong Zhang } 256d4002b98SHong Zhang } 257d4002b98SHong Zhang } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 258d4002b98SHong Zhang } 259d4002b98SHong Zhang PetscFunctionReturn(0); 260d4002b98SHong Zhang } 261d4002b98SHong Zhang 262d4002b98SHong Zhang extern PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat,Vec,Vec); 263d4002b98SHong Zhang 264d4002b98SHong Zhang PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat,MatAssemblyType mode) 265d4002b98SHong Zhang { 266d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 267d4002b98SHong Zhang PetscInt nstash,reallocs; 268d4002b98SHong Zhang 269d4002b98SHong Zhang PetscFunctionBegin; 270d4002b98SHong Zhang if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 271d4002b98SHong Zhang 2729566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 2739566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 2749566063dSJacob Faibussowitsch PetscCall(PetscInfo(sell->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 275d4002b98SHong Zhang PetscFunctionReturn(0); 276d4002b98SHong Zhang } 277d4002b98SHong Zhang 278d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat,MatAssemblyType mode) 279d4002b98SHong Zhang { 280d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 281d4002b98SHong Zhang PetscMPIInt n; 282d4002b98SHong Zhang PetscInt i,flg; 283d4002b98SHong Zhang PetscInt *row,*col; 284d4002b98SHong Zhang PetscScalar *val; 285d4002b98SHong Zhang PetscBool other_disassembled; 286d4002b98SHong Zhang /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */ 287d4002b98SHong Zhang PetscFunctionBegin; 288d4002b98SHong Zhang if (!sell->donotstash && !mat->nooffprocentries) { 289d4002b98SHong Zhang while (1) { 2909566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 291d4002b98SHong Zhang if (!flg) break; 292d4002b98SHong Zhang 293d4002b98SHong Zhang for (i=0; i<n; i++) { /* assemble one by one */ 2949566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISELL(mat,1,row+i,1,col+i,val+i,mat->insertmode)); 295d4002b98SHong Zhang } 296d4002b98SHong Zhang } 2979566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 298d4002b98SHong Zhang } 2999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->A,mode)); 3009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->A,mode)); 301d4002b98SHong Zhang 302d4002b98SHong Zhang /* 303d4002b98SHong Zhang determine if any processor has disassembled, if so we must 304d4002b98SHong Zhang also disassemble ourselfs, in order that we may reassemble. 305d4002b98SHong Zhang */ 306d4002b98SHong Zhang /* 307d4002b98SHong Zhang if nonzero structure of submatrix B cannot change then we know that 308d4002b98SHong Zhang no processor disassembled thus we can skip this stuff 309d4002b98SHong Zhang */ 310d4002b98SHong Zhang if (!((Mat_SeqSELL*)sell->B->data)->nonew) { 3111c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 31208401ef6SPierre Jolivet PetscCheck(!mat->was_assembled || other_disassembled,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatDisAssemble not implemented yet"); 313d4002b98SHong Zhang } 314d4002b98SHong Zhang if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 3159566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPISELL(mat)); 316d4002b98SHong Zhang } 317d4002b98SHong Zhang /* 3189566063dSJacob Faibussowitsch PetscCall(MatSetOption(sell->B,MAT_USE_INODES,PETSC_FALSE)); 319d4002b98SHong Zhang */ 3209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(sell->B,mode)); 3219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(sell->B,mode)); 3229566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 323f4259b30SLisandro Dalcin sell->rowvalues = NULL; 3249566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 325d4002b98SHong Zhang 326d4002b98SHong Zhang /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 327d4002b98SHong Zhang if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL*)(sell->A->data))->nonew) { 328d4002b98SHong Zhang PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate; 3291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 330d4002b98SHong Zhang } 331d4002b98SHong Zhang PetscFunctionReturn(0); 332d4002b98SHong Zhang } 333d4002b98SHong Zhang 334d4002b98SHong Zhang PetscErrorCode MatZeroEntries_MPISELL(Mat A) 335d4002b98SHong Zhang { 336d4002b98SHong Zhang Mat_MPISELL *l=(Mat_MPISELL*)A->data; 337d4002b98SHong Zhang 338d4002b98SHong Zhang PetscFunctionBegin; 3399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 3409566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 341d4002b98SHong Zhang PetscFunctionReturn(0); 342d4002b98SHong Zhang } 343d4002b98SHong Zhang 344d4002b98SHong Zhang PetscErrorCode MatMult_MPISELL(Mat A,Vec xx,Vec yy) 345d4002b98SHong Zhang { 346d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 347d4002b98SHong Zhang PetscInt nt; 348d4002b98SHong Zhang 349d4002b98SHong Zhang PetscFunctionBegin; 3509566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 35108401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",A->cmap->n,nt); 3529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 3549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3559566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 356d4002b98SHong Zhang PetscFunctionReturn(0); 357d4002b98SHong Zhang } 358d4002b98SHong Zhang 359d4002b98SHong Zhang PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A,Vec bb,Vec xx) 360d4002b98SHong Zhang { 361d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 362d4002b98SHong Zhang 363d4002b98SHong Zhang PetscFunctionBegin; 3649566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A,bb,xx)); 365d4002b98SHong Zhang PetscFunctionReturn(0); 366d4002b98SHong Zhang } 367d4002b98SHong Zhang 368d4002b98SHong Zhang PetscErrorCode MatMultAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 369d4002b98SHong Zhang { 370d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 371d4002b98SHong Zhang 372d4002b98SHong Zhang PetscFunctionBegin; 3739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3749566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 3759566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 3769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 377d4002b98SHong Zhang PetscFunctionReturn(0); 378d4002b98SHong Zhang } 379d4002b98SHong Zhang 380d4002b98SHong Zhang PetscErrorCode MatMultTranspose_MPISELL(Mat A,Vec xx,Vec yy) 381d4002b98SHong Zhang { 382d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 383d4002b98SHong Zhang 384d4002b98SHong Zhang PetscFunctionBegin; 385d4002b98SHong Zhang /* do nondiagonal part */ 3869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 387d4002b98SHong Zhang /* do local part */ 3889566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 389a29b4eb7SJunchao Zhang /* add partial results together */ 3909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 3919566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 392d4002b98SHong Zhang PetscFunctionReturn(0); 393d4002b98SHong Zhang } 394d4002b98SHong Zhang 395d4002b98SHong Zhang PetscErrorCode MatIsTranspose_MPISELL(Mat Amat,Mat Bmat,PetscReal tol,PetscBool *f) 396d4002b98SHong Zhang { 397d4002b98SHong Zhang MPI_Comm comm; 398d4002b98SHong Zhang Mat_MPISELL *Asell=(Mat_MPISELL*)Amat->data,*Bsell; 399d4002b98SHong Zhang Mat Adia=Asell->A,Bdia,Aoff,Boff,*Aoffs,*Boffs; 400d4002b98SHong Zhang IS Me,Notme; 401d4002b98SHong Zhang PetscInt M,N,first,last,*notme,i; 402d4002b98SHong Zhang PetscMPIInt size; 403d4002b98SHong Zhang 404d4002b98SHong Zhang PetscFunctionBegin; 405d4002b98SHong Zhang /* Easy test: symmetric diagonal block */ 406d4002b98SHong Zhang Bsell = (Mat_MPISELL*)Bmat->data; Bdia = Bsell->A; 4079566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia,Bdia,tol,f)); 408d4002b98SHong Zhang if (!*f) PetscFunctionReturn(0); 4099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat,&comm)); 4109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 411d4002b98SHong Zhang if (size == 1) PetscFunctionReturn(0); 412d4002b98SHong Zhang 413d4002b98SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 4149566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat,&M,&N)); 4159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat,&first,&last)); 4169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N-last+first,¬me)); 417d4002b98SHong Zhang for (i=0; i<first; i++) notme[i] = i; 418d4002b98SHong Zhang for (i=last; i<M; i++) notme[i-last+first] = i; 4199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF,N-last+first,notme,PETSC_COPY_VALUES,&Notme)); 4209566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF,last-first,first,1,&Me)); 4219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat,1,&Me,&Notme,MAT_INITIAL_MATRIX,&Aoffs)); 422d4002b98SHong Zhang Aoff = Aoffs[0]; 4239566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat,1,&Notme,&Me,MAT_INITIAL_MATRIX,&Boffs)); 424d4002b98SHong Zhang Boff = Boffs[0]; 4259566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff,Boff,tol,f)); 4269566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Aoffs)); 4279566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1,&Boffs)); 4289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 4299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 4309566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 431d4002b98SHong Zhang PetscFunctionReturn(0); 432d4002b98SHong Zhang } 433d4002b98SHong Zhang 434d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A,Vec xx,Vec yy,Vec zz) 435d4002b98SHong Zhang { 436d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 437d4002b98SHong Zhang 438d4002b98SHong Zhang PetscFunctionBegin; 439d4002b98SHong Zhang /* do nondiagonal part */ 4409566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 441d4002b98SHong Zhang /* do local part */ 4429566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 443e4a140f6SJunchao Zhang /* add partial results together */ 4449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 4459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 446d4002b98SHong Zhang PetscFunctionReturn(0); 447d4002b98SHong Zhang } 448d4002b98SHong Zhang 449d4002b98SHong Zhang /* 450d4002b98SHong Zhang This only works correctly for square matrices where the subblock A->A is the 451d4002b98SHong Zhang diagonal block 452d4002b98SHong Zhang */ 453d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_MPISELL(Mat A,Vec v) 454d4002b98SHong Zhang { 455d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 456d4002b98SHong Zhang 457d4002b98SHong Zhang PetscFunctionBegin; 45808401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 4592c71b3e2SJacob Faibussowitsch PetscCheckFalse(A->rmap->rstart != A->cmap->rstart || A->rmap->rend != A->cmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"row partition must equal col partition"); 4609566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A,v)); 461d4002b98SHong Zhang PetscFunctionReturn(0); 462d4002b98SHong Zhang } 463d4002b98SHong Zhang 464d4002b98SHong Zhang PetscErrorCode MatScale_MPISELL(Mat A,PetscScalar aa) 465d4002b98SHong Zhang { 466d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 467d4002b98SHong Zhang 468d4002b98SHong Zhang PetscFunctionBegin; 4699566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 4709566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 471d4002b98SHong Zhang PetscFunctionReturn(0); 472d4002b98SHong Zhang } 473d4002b98SHong Zhang 474d4002b98SHong Zhang PetscErrorCode MatDestroy_MPISELL(Mat mat) 475d4002b98SHong Zhang { 476d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 477d4002b98SHong Zhang 478d4002b98SHong Zhang PetscFunctionBegin; 479d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 480c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 481d4002b98SHong Zhang #endif 4829566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 4839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->diag)); 4849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->A)); 4859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&sell->B)); 486d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 4879566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&sell->colmap)); 488d4002b98SHong Zhang #else 4899566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->colmap)); 490d4002b98SHong Zhang #endif 4919566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->garray)); 4929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&sell->lvec)); 4939566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sell->Mvctx)); 4949566063dSJacob Faibussowitsch PetscCall(PetscFree2(sell->rowvalues,sell->rowindices)); 4959566063dSJacob Faibussowitsch PetscCall(PetscFree(sell->ld)); 4969566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 497d4002b98SHong Zhang 4989566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 4999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 5009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 5019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatIsTranspose_C",NULL)); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPISELLSetPreallocation_C",NULL)); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpisell_mpiaij_C",NULL)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 505d4002b98SHong Zhang PetscFunctionReturn(0); 506d4002b98SHong Zhang } 507d4002b98SHong Zhang 508d4002b98SHong Zhang #include <petscdraw.h> 509d4002b98SHong Zhang PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 510d4002b98SHong Zhang { 511d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 512d4002b98SHong Zhang PetscMPIInt rank=sell->rank,size=sell->size; 513d4002b98SHong Zhang PetscBool isdraw,iascii,isbinary; 514d4002b98SHong Zhang PetscViewer sviewer; 515d4002b98SHong Zhang PetscViewerFormat format; 516d4002b98SHong Zhang 517d4002b98SHong Zhang PetscFunctionBegin; 5189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 5199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 521d4002b98SHong Zhang if (iascii) { 5229566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 523d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 524d4002b98SHong Zhang MatInfo info; 5256335e310SSatish Balay PetscInt *inodes; 526d4002b98SHong Zhang 5279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 5289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 5299566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,NULL,&inodes,NULL)); 5309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 531d4002b98SHong Zhang if (!inodes) { 532*d0609cedSBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", 533*d0609cedSBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 534d4002b98SHong Zhang } else { 535*d0609cedSBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", 536*d0609cedSBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 537d4002b98SHong Zhang } 5389566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->A,MAT_LOCAL,&info)); 5399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5409566063dSJacob Faibussowitsch PetscCall(MatGetInfo(sell->B,MAT_LOCAL,&info)); 5419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 5429566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 5439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 5449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 5459566063dSJacob Faibussowitsch PetscCall(VecScatterView(sell->Mvctx,viewer)); 546d4002b98SHong Zhang PetscFunctionReturn(0); 547d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_INFO) { 548d4002b98SHong Zhang PetscInt inodecount,inodelimit,*inodes; 5499566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(sell->A,&inodecount,&inodes,&inodelimit)); 550d4002b98SHong Zhang if (inodes) { 5519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n",inodecount,inodelimit)); 552d4002b98SHong Zhang } else { 5539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"not using I-node (on process 0) routines\n")); 554d4002b98SHong Zhang } 555d4002b98SHong Zhang PetscFunctionReturn(0); 556d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 557d4002b98SHong Zhang PetscFunctionReturn(0); 558d4002b98SHong Zhang } 559d4002b98SHong Zhang } else if (isbinary) { 560d4002b98SHong Zhang if (size == 1) { 5619566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sell->A,((PetscObject)mat)->name)); 5629566063dSJacob Faibussowitsch PetscCall(MatView(sell->A,viewer)); 563d4002b98SHong Zhang } else { 5649566063dSJacob Faibussowitsch /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */ 565d4002b98SHong Zhang } 566d4002b98SHong Zhang PetscFunctionReturn(0); 567d4002b98SHong Zhang } else if (isdraw) { 568d4002b98SHong Zhang PetscDraw draw; 569d4002b98SHong Zhang PetscBool isnull; 5709566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 5719566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 572d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 573d4002b98SHong Zhang } 574d4002b98SHong Zhang 575d4002b98SHong Zhang { 576d4002b98SHong Zhang /* assemble the entire matrix onto first processor. */ 577d4002b98SHong Zhang Mat A; 578d4002b98SHong Zhang Mat_SeqSELL *Aloc; 579d4002b98SHong Zhang PetscInt M=mat->rmap->N,N=mat->cmap->N,*acolidx,row,col,i,j; 580d4002b98SHong Zhang MatScalar *aval; 581d4002b98SHong Zhang PetscBool isnonzero; 582d4002b98SHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 584dd400576SPatrick Sanan if (rank == 0) { 5859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 586d4002b98SHong Zhang } else { 5879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 588d4002b98SHong Zhang } 589d4002b98SHong Zhang /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */ 5909566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPISELL)); 5919566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,0,NULL,0,NULL)); 5929566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 5939566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 594d4002b98SHong Zhang 595d4002b98SHong Zhang /* copy over the A part */ 596d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->A->data; 597d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 598d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { /* loop over slices */ 599d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 600d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 601d4002b98SHong Zhang if (isnonzero) { /* check the mask bit */ 602d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; /* i<<3 is the starting row of this slice */ 603d4002b98SHong Zhang col = *acolidx + mat->rmap->rstart; 6049566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 605d4002b98SHong Zhang } 606d4002b98SHong Zhang aval++; acolidx++; 607d4002b98SHong Zhang } 608d4002b98SHong Zhang } 609d4002b98SHong Zhang 610d4002b98SHong Zhang /* copy over the B part */ 611d4002b98SHong Zhang Aloc = (Mat_SeqSELL*)sell->B->data; 612d4002b98SHong Zhang acolidx = Aloc->colidx; aval = Aloc->val; 613d4002b98SHong Zhang for (i=0; i<Aloc->totalslices; i++) { 614d4002b98SHong Zhang for (j=Aloc->sliidx[i]; j<Aloc->sliidx[i+1]; j++) { 615d4002b98SHong Zhang isnonzero = (PetscBool)((j-Aloc->sliidx[i])/8 < Aloc->rlen[(i<<3)+(j&0x07)]); 616d4002b98SHong Zhang if (isnonzero) { 617d4002b98SHong Zhang row = (i<<3)+(j&0x07) + mat->rmap->rstart; 618d4002b98SHong Zhang col = sell->garray[*acolidx]; 6199566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&col,aval,INSERT_VALUES)); 620d4002b98SHong Zhang } 621d4002b98SHong Zhang aval++; acolidx++; 622d4002b98SHong Zhang } 623d4002b98SHong Zhang } 624d4002b98SHong Zhang 6259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 627d4002b98SHong Zhang /* 628d4002b98SHong Zhang Everyone has to call to draw the matrix since the graphics waits are 629d4002b98SHong Zhang synchronized across all processors that share the PetscDraw object 630d4002b98SHong Zhang */ 6319566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 632dd400576SPatrick Sanan if (rank == 0) { 6339566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL*)(A->data))->A,((PetscObject)mat)->name)); 6349566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL(((Mat_MPISELL*)(A->data))->A,sviewer)); 635d4002b98SHong Zhang } 6369566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6379566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6389566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 639d4002b98SHong Zhang } 640d4002b98SHong Zhang PetscFunctionReturn(0); 641d4002b98SHong Zhang } 642d4002b98SHong Zhang 643d4002b98SHong Zhang PetscErrorCode MatView_MPISELL(Mat mat,PetscViewer viewer) 644d4002b98SHong Zhang { 645d4002b98SHong Zhang PetscBool iascii,isdraw,issocket,isbinary; 646d4002b98SHong Zhang 647d4002b98SHong Zhang PetscFunctionBegin; 6489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 6509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 652d4002b98SHong Zhang if (iascii || isdraw || isbinary || issocket) { 6539566063dSJacob Faibussowitsch PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat,viewer)); 654d4002b98SHong Zhang } 655d4002b98SHong Zhang PetscFunctionReturn(0); 656d4002b98SHong Zhang } 657d4002b98SHong Zhang 658d4002b98SHong Zhang PetscErrorCode MatGetGhosts_MPISELL(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 659d4002b98SHong Zhang { 660d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 661d4002b98SHong Zhang 662d4002b98SHong Zhang PetscFunctionBegin; 6639566063dSJacob Faibussowitsch PetscCall(MatGetSize(sell->B,NULL,nghosts)); 664d4002b98SHong Zhang if (ghosts) *ghosts = sell->garray; 665d4002b98SHong Zhang PetscFunctionReturn(0); 666d4002b98SHong Zhang } 667d4002b98SHong Zhang 668d4002b98SHong Zhang PetscErrorCode MatGetInfo_MPISELL(Mat matin,MatInfoType flag,MatInfo *info) 669d4002b98SHong Zhang { 670d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 671d4002b98SHong Zhang Mat A=mat->A,B=mat->B; 6723966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 673d4002b98SHong Zhang 674d4002b98SHong Zhang PetscFunctionBegin; 675d4002b98SHong Zhang info->block_size = 1.0; 6769566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 677d4002b98SHong Zhang 678d4002b98SHong Zhang isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 679d4002b98SHong Zhang isend[3] = info->memory; isend[4] = info->mallocs; 680d4002b98SHong Zhang 6819566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 682d4002b98SHong Zhang 683d4002b98SHong Zhang isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 684d4002b98SHong Zhang isend[3] += info->memory; isend[4] += info->mallocs; 685d4002b98SHong Zhang if (flag == MAT_LOCAL) { 686d4002b98SHong Zhang info->nz_used = isend[0]; 687d4002b98SHong Zhang info->nz_allocated = isend[1]; 688d4002b98SHong Zhang info->nz_unneeded = isend[2]; 689d4002b98SHong Zhang info->memory = isend[3]; 690d4002b98SHong Zhang info->mallocs = isend[4]; 691d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_MAX) { 6921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 693d4002b98SHong Zhang 694d4002b98SHong Zhang info->nz_used = irecv[0]; 695d4002b98SHong Zhang info->nz_allocated = irecv[1]; 696d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 697d4002b98SHong Zhang info->memory = irecv[3]; 698d4002b98SHong Zhang info->mallocs = irecv[4]; 699d4002b98SHong Zhang } else if (flag == MAT_GLOBAL_SUM) { 7001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 701d4002b98SHong Zhang 702d4002b98SHong Zhang info->nz_used = irecv[0]; 703d4002b98SHong Zhang info->nz_allocated = irecv[1]; 704d4002b98SHong Zhang info->nz_unneeded = irecv[2]; 705d4002b98SHong Zhang info->memory = irecv[3]; 706d4002b98SHong Zhang info->mallocs = irecv[4]; 707d4002b98SHong Zhang } 708d4002b98SHong Zhang info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 709d4002b98SHong Zhang info->fill_ratio_needed = 0; 710d4002b98SHong Zhang info->factor_mallocs = 0; 711d4002b98SHong Zhang PetscFunctionReturn(0); 712d4002b98SHong Zhang } 713d4002b98SHong Zhang 714d4002b98SHong Zhang PetscErrorCode MatSetOption_MPISELL(Mat A,MatOption op,PetscBool flg) 715d4002b98SHong Zhang { 716d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 717d4002b98SHong Zhang 718d4002b98SHong Zhang PetscFunctionBegin; 719d4002b98SHong Zhang switch (op) { 720d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 721d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 722d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 723d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 724d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 725d4002b98SHong Zhang case MAT_USE_INODES: 726d4002b98SHong Zhang case MAT_IGNORE_ZERO_ENTRIES: 727d4002b98SHong Zhang MatCheckPreallocated(A,1); 7289566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7299566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 730d4002b98SHong Zhang break; 731d4002b98SHong Zhang case MAT_ROW_ORIENTED: 732d4002b98SHong Zhang MatCheckPreallocated(A,1); 733d4002b98SHong Zhang a->roworiented = flg; 734d4002b98SHong Zhang 7359566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 7369566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 737d4002b98SHong Zhang break; 7388c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 739071fcb05SBarry Smith case MAT_SORTED_FULL: 7409566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 741d4002b98SHong Zhang break; 742d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 743d4002b98SHong Zhang a->donotstash = flg; 744d4002b98SHong Zhang break; 745d4002b98SHong Zhang case MAT_SPD: 746d4002b98SHong Zhang A->spd_set = PETSC_TRUE; 747d4002b98SHong Zhang A->spd = flg; 748d4002b98SHong Zhang if (flg) { 749d4002b98SHong Zhang A->symmetric = PETSC_TRUE; 750d4002b98SHong Zhang A->structurally_symmetric = PETSC_TRUE; 751d4002b98SHong Zhang A->symmetric_set = PETSC_TRUE; 752d4002b98SHong Zhang A->structurally_symmetric_set = PETSC_TRUE; 753d4002b98SHong Zhang } 754d4002b98SHong Zhang break; 755d4002b98SHong Zhang case MAT_SYMMETRIC: 756d4002b98SHong Zhang MatCheckPreallocated(A,1); 7579566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 758d4002b98SHong Zhang break; 759d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 760d4002b98SHong Zhang MatCheckPreallocated(A,1); 7619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 762d4002b98SHong Zhang break; 763d4002b98SHong Zhang case MAT_HERMITIAN: 764d4002b98SHong Zhang MatCheckPreallocated(A,1); 7659566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 766d4002b98SHong Zhang break; 767d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 768d4002b98SHong Zhang MatCheckPreallocated(A,1); 7699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 770d4002b98SHong Zhang break; 771d4002b98SHong Zhang default: 77298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 773d4002b98SHong Zhang } 774d4002b98SHong Zhang PetscFunctionReturn(0); 775d4002b98SHong Zhang } 776d4002b98SHong Zhang 777d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_MPISELL(Mat mat,Vec ll,Vec rr) 778d4002b98SHong Zhang { 779d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 780d4002b98SHong Zhang Mat a=sell->A,b=sell->B; 781d4002b98SHong Zhang PetscInt s1,s2,s3; 782d4002b98SHong Zhang 783d4002b98SHong Zhang PetscFunctionBegin; 7849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 785d4002b98SHong Zhang if (rr) { 7869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 78708401ef6SPierre Jolivet PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 788d4002b98SHong Zhang /* Overlap communication with computation. */ 7899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 790d4002b98SHong Zhang } 791d4002b98SHong Zhang if (ll) { 7929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 79308401ef6SPierre Jolivet PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 7949566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 795d4002b98SHong Zhang } 796d4002b98SHong Zhang /* scale the diagonal block */ 7979566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 798d4002b98SHong Zhang 799d4002b98SHong Zhang if (rr) { 800d4002b98SHong Zhang /* Do a scatter end and then right scale the off-diagonal block */ 8019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sell->Mvctx,rr,sell->lvec,INSERT_VALUES,SCATTER_FORWARD)); 8029566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,sell->lvec)); 803d4002b98SHong Zhang } 804d4002b98SHong Zhang PetscFunctionReturn(0); 805d4002b98SHong Zhang } 806d4002b98SHong Zhang 807d4002b98SHong Zhang PetscErrorCode MatSetUnfactored_MPISELL(Mat A) 808d4002b98SHong Zhang { 809d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 810d4002b98SHong Zhang 811d4002b98SHong Zhang PetscFunctionBegin; 8129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 813d4002b98SHong Zhang PetscFunctionReturn(0); 814d4002b98SHong Zhang } 815d4002b98SHong Zhang 816d4002b98SHong Zhang PetscErrorCode MatEqual_MPISELL(Mat A,Mat B,PetscBool *flag) 817d4002b98SHong Zhang { 818d4002b98SHong Zhang Mat_MPISELL *matB=(Mat_MPISELL*)B->data,*matA=(Mat_MPISELL*)A->data; 819d4002b98SHong Zhang Mat a,b,c,d; 820d4002b98SHong Zhang PetscBool flg; 821d4002b98SHong Zhang 822d4002b98SHong Zhang PetscFunctionBegin; 823d4002b98SHong Zhang a = matA->A; b = matA->B; 824d4002b98SHong Zhang c = matB->A; d = matB->B; 825d4002b98SHong Zhang 8269566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 827d4002b98SHong Zhang if (flg) { 8289566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 829d4002b98SHong Zhang } 8301c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 831d4002b98SHong Zhang PetscFunctionReturn(0); 832d4002b98SHong Zhang } 833d4002b98SHong Zhang 834d4002b98SHong Zhang PetscErrorCode MatCopy_MPISELL(Mat A,Mat B,MatStructure str) 835d4002b98SHong Zhang { 836d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 837d4002b98SHong Zhang Mat_MPISELL *b=(Mat_MPISELL*)B->data; 838d4002b98SHong Zhang 839d4002b98SHong Zhang PetscFunctionBegin; 840d4002b98SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 841d4002b98SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 842d4002b98SHong Zhang /* because of the column compression in the off-processor part of the matrix a->B, 843d4002b98SHong Zhang the number of columns in a->B and b->B may be different, hence we cannot call 844d4002b98SHong Zhang the MatCopy() directly on the two parts. If need be, we can provide a more 845d4002b98SHong Zhang efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 846d4002b98SHong Zhang then copying the submatrices */ 8479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 848d4002b98SHong Zhang } else { 8499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 8509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 851d4002b98SHong Zhang } 852d4002b98SHong Zhang PetscFunctionReturn(0); 853d4002b98SHong Zhang } 854d4002b98SHong Zhang 855d4002b98SHong Zhang PetscErrorCode MatSetUp_MPISELL(Mat A) 856d4002b98SHong Zhang { 857d4002b98SHong Zhang PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(A,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 859d4002b98SHong Zhang PetscFunctionReturn(0); 860d4002b98SHong Zhang } 861d4002b98SHong Zhang 862d4002b98SHong Zhang extern PetscErrorCode MatConjugate_SeqSELL(Mat); 863d4002b98SHong Zhang 864d4002b98SHong Zhang PetscErrorCode MatConjugate_MPISELL(Mat mat) 865d4002b98SHong Zhang { 8665f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 8675f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 868d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 869d4002b98SHong Zhang 8709566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->A)); 8719566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqSELL(sell->B)); 8725f80ce2aSJacob Faibussowitsch } 873d4002b98SHong Zhang PetscFunctionReturn(0); 874d4002b98SHong Zhang } 875d4002b98SHong Zhang 876d4002b98SHong Zhang PetscErrorCode MatRealPart_MPISELL(Mat A) 877d4002b98SHong Zhang { 878d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 879d4002b98SHong Zhang 880d4002b98SHong Zhang PetscFunctionBegin; 8819566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 8829566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 883d4002b98SHong Zhang PetscFunctionReturn(0); 884d4002b98SHong Zhang } 885d4002b98SHong Zhang 886d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_MPISELL(Mat A) 887d4002b98SHong Zhang { 888d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 889d4002b98SHong Zhang 890d4002b98SHong Zhang PetscFunctionBegin; 8919566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 8929566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 893d4002b98SHong Zhang PetscFunctionReturn(0); 894d4002b98SHong Zhang } 895d4002b98SHong Zhang 896d4002b98SHong Zhang PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A,const PetscScalar **values) 897d4002b98SHong Zhang { 898d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 899d4002b98SHong Zhang 900d4002b98SHong Zhang PetscFunctionBegin; 9019566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 902d4002b98SHong Zhang A->factorerrortype = a->A->factorerrortype; 903d4002b98SHong Zhang PetscFunctionReturn(0); 904d4002b98SHong Zhang } 905d4002b98SHong Zhang 906d4002b98SHong Zhang static PetscErrorCode MatSetRandom_MPISELL(Mat x,PetscRandom rctx) 907d4002b98SHong Zhang { 908d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)x->data; 909d4002b98SHong Zhang 910d4002b98SHong Zhang PetscFunctionBegin; 9119566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->A,rctx)); 9129566063dSJacob Faibussowitsch PetscCall(MatSetRandom(sell->B,rctx)); 9139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x,MAT_FINAL_ASSEMBLY)); 9149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x,MAT_FINAL_ASSEMBLY)); 915d4002b98SHong Zhang PetscFunctionReturn(0); 916d4002b98SHong Zhang } 917d4002b98SHong Zhang 918d4002b98SHong Zhang PetscErrorCode MatSetFromOptions_MPISELL(PetscOptionItems *PetscOptionsObject,Mat A) 919d4002b98SHong Zhang { 920d4002b98SHong Zhang PetscFunctionBegin; 921*d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject,"MPISELL options"); 922*d0609cedSBarry Smith PetscOptionsHeadEnd(); 923d4002b98SHong Zhang PetscFunctionReturn(0); 924d4002b98SHong Zhang } 925d4002b98SHong Zhang 926d4002b98SHong Zhang PetscErrorCode MatShift_MPISELL(Mat Y,PetscScalar a) 927d4002b98SHong Zhang { 928d4002b98SHong Zhang Mat_MPISELL *msell=(Mat_MPISELL*)Y->data; 929d4002b98SHong Zhang Mat_SeqSELL *sell=(Mat_SeqSELL*)msell->A->data; 930d4002b98SHong Zhang 931d4002b98SHong Zhang PetscFunctionBegin; 932d4002b98SHong Zhang if (!Y->preallocated) { 9339566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(Y,1,NULL,0,NULL)); 934d4002b98SHong Zhang } else if (!sell->nz) { 935d4002b98SHong Zhang PetscInt nonew = sell->nonew; 9369566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(msell->A,1,NULL)); 937d4002b98SHong Zhang sell->nonew = nonew; 938d4002b98SHong Zhang } 9399566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 940d4002b98SHong Zhang PetscFunctionReturn(0); 941d4002b98SHong Zhang } 942d4002b98SHong Zhang 943d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_MPISELL(Mat A,PetscBool *missing,PetscInt *d) 944d4002b98SHong Zhang { 945d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 946d4002b98SHong Zhang 947d4002b98SHong Zhang PetscFunctionBegin; 94808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 9499566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 950d4002b98SHong Zhang if (d) { 951d4002b98SHong Zhang PetscInt rstart; 9529566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 953d4002b98SHong Zhang *d += rstart; 954d4002b98SHong Zhang 955d4002b98SHong Zhang } 956d4002b98SHong Zhang PetscFunctionReturn(0); 957d4002b98SHong Zhang } 958d4002b98SHong Zhang 959d4002b98SHong Zhang PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A,Mat *a) 960d4002b98SHong Zhang { 961d4002b98SHong Zhang PetscFunctionBegin; 962d4002b98SHong Zhang *a = ((Mat_MPISELL*)A->data)->A; 963d4002b98SHong Zhang PetscFunctionReturn(0); 964d4002b98SHong Zhang } 965d4002b98SHong Zhang 966d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 967d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_MPISELL, 968f4259b30SLisandro Dalcin NULL, 969f4259b30SLisandro Dalcin NULL, 970d4002b98SHong Zhang MatMult_MPISELL, 971d4002b98SHong Zhang /* 4*/ MatMultAdd_MPISELL, 972d4002b98SHong Zhang MatMultTranspose_MPISELL, 973d4002b98SHong Zhang MatMultTransposeAdd_MPISELL, 974f4259b30SLisandro Dalcin NULL, 975f4259b30SLisandro Dalcin NULL, 976f4259b30SLisandro Dalcin NULL, 977f4259b30SLisandro Dalcin /*10*/ NULL, 978f4259b30SLisandro Dalcin NULL, 979f4259b30SLisandro Dalcin NULL, 980d4002b98SHong Zhang MatSOR_MPISELL, 981f4259b30SLisandro Dalcin NULL, 982d4002b98SHong Zhang /*15*/ MatGetInfo_MPISELL, 983d4002b98SHong Zhang MatEqual_MPISELL, 984d4002b98SHong Zhang MatGetDiagonal_MPISELL, 985d4002b98SHong Zhang MatDiagonalScale_MPISELL, 986f4259b30SLisandro Dalcin NULL, 987d4002b98SHong Zhang /*20*/ MatAssemblyBegin_MPISELL, 988d4002b98SHong Zhang MatAssemblyEnd_MPISELL, 989d4002b98SHong Zhang MatSetOption_MPISELL, 990d4002b98SHong Zhang MatZeroEntries_MPISELL, 991f4259b30SLisandro Dalcin /*24*/ NULL, 992f4259b30SLisandro Dalcin NULL, 993f4259b30SLisandro Dalcin NULL, 994f4259b30SLisandro Dalcin NULL, 995f4259b30SLisandro Dalcin NULL, 996d4002b98SHong Zhang /*29*/ MatSetUp_MPISELL, 997f4259b30SLisandro Dalcin NULL, 998f4259b30SLisandro Dalcin NULL, 999d4002b98SHong Zhang MatGetDiagonalBlock_MPISELL, 1000f4259b30SLisandro Dalcin NULL, 1001d4002b98SHong Zhang /*34*/ MatDuplicate_MPISELL, 1002f4259b30SLisandro Dalcin NULL, 1003f4259b30SLisandro Dalcin NULL, 1004f4259b30SLisandro Dalcin NULL, 1005f4259b30SLisandro Dalcin NULL, 1006f4259b30SLisandro Dalcin /*39*/ NULL, 1007f4259b30SLisandro Dalcin NULL, 1008f4259b30SLisandro Dalcin NULL, 1009d4002b98SHong Zhang MatGetValues_MPISELL, 1010d4002b98SHong Zhang MatCopy_MPISELL, 1011f4259b30SLisandro Dalcin /*44*/ NULL, 1012d4002b98SHong Zhang MatScale_MPISELL, 1013d4002b98SHong Zhang MatShift_MPISELL, 1014d4002b98SHong Zhang MatDiagonalSet_MPISELL, 1015f4259b30SLisandro Dalcin NULL, 1016d4002b98SHong Zhang /*49*/ MatSetRandom_MPISELL, 1017f4259b30SLisandro Dalcin NULL, 1018f4259b30SLisandro Dalcin NULL, 1019f4259b30SLisandro Dalcin NULL, 1020f4259b30SLisandro Dalcin NULL, 1021d4002b98SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 1022f4259b30SLisandro Dalcin NULL, 1023d4002b98SHong Zhang MatSetUnfactored_MPISELL, 1024f4259b30SLisandro Dalcin NULL, 1025f4259b30SLisandro Dalcin NULL, 1026f4259b30SLisandro Dalcin /*59*/ NULL, 1027d4002b98SHong Zhang MatDestroy_MPISELL, 1028d4002b98SHong Zhang MatView_MPISELL, 1029f4259b30SLisandro Dalcin NULL, 1030f4259b30SLisandro Dalcin NULL, 1031f4259b30SLisandro Dalcin /*64*/ NULL, 1032f4259b30SLisandro Dalcin NULL, 1033f4259b30SLisandro Dalcin NULL, 1034f4259b30SLisandro Dalcin NULL, 1035f4259b30SLisandro Dalcin NULL, 1036f4259b30SLisandro Dalcin /*69*/ NULL, 1037f4259b30SLisandro Dalcin NULL, 1038f4259b30SLisandro Dalcin NULL, 1039f4259b30SLisandro Dalcin NULL, 1040f4259b30SLisandro Dalcin NULL, 1041f4259b30SLisandro Dalcin NULL, 1042d4002b98SHong Zhang /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */ 1043d4002b98SHong Zhang MatSetFromOptions_MPISELL, 1044f4259b30SLisandro Dalcin NULL, 1045f4259b30SLisandro Dalcin NULL, 1046f4259b30SLisandro Dalcin NULL, 1047f4259b30SLisandro Dalcin /*80*/ NULL, 1048f4259b30SLisandro Dalcin NULL, 1049f4259b30SLisandro Dalcin NULL, 1050f4259b30SLisandro Dalcin /*83*/ NULL, 1051f4259b30SLisandro Dalcin NULL, 1052f4259b30SLisandro Dalcin NULL, 1053f4259b30SLisandro Dalcin NULL, 1054f4259b30SLisandro Dalcin NULL, 1055f4259b30SLisandro Dalcin NULL, 1056f4259b30SLisandro Dalcin /*89*/ NULL, 1057f4259b30SLisandro Dalcin NULL, 1058f4259b30SLisandro Dalcin NULL, 1059f4259b30SLisandro Dalcin NULL, 1060f4259b30SLisandro Dalcin NULL, 1061f4259b30SLisandro Dalcin /*94*/ NULL, 1062f4259b30SLisandro Dalcin NULL, 1063f4259b30SLisandro Dalcin NULL, 1064f4259b30SLisandro Dalcin NULL, 1065f4259b30SLisandro Dalcin NULL, 1066f4259b30SLisandro Dalcin /*99*/ NULL, 1067f4259b30SLisandro Dalcin NULL, 1068f4259b30SLisandro Dalcin NULL, 1069d4002b98SHong Zhang MatConjugate_MPISELL, 1070f4259b30SLisandro Dalcin NULL, 1071f4259b30SLisandro Dalcin /*104*/NULL, 1072d4002b98SHong Zhang MatRealPart_MPISELL, 1073d4002b98SHong Zhang MatImaginaryPart_MPISELL, 1074f4259b30SLisandro Dalcin NULL, 1075f4259b30SLisandro Dalcin NULL, 1076f4259b30SLisandro Dalcin /*109*/NULL, 1077f4259b30SLisandro Dalcin NULL, 1078f4259b30SLisandro Dalcin NULL, 1079f4259b30SLisandro Dalcin NULL, 1080d4002b98SHong Zhang MatMissingDiagonal_MPISELL, 1081f4259b30SLisandro Dalcin /*114*/NULL, 1082f4259b30SLisandro Dalcin NULL, 1083d4002b98SHong Zhang MatGetGhosts_MPISELL, 1084f4259b30SLisandro Dalcin NULL, 1085f4259b30SLisandro Dalcin NULL, 1086f4259b30SLisandro Dalcin /*119*/NULL, 1087f4259b30SLisandro Dalcin NULL, 1088f4259b30SLisandro Dalcin NULL, 1089f4259b30SLisandro Dalcin NULL, 1090f4259b30SLisandro Dalcin NULL, 1091f4259b30SLisandro Dalcin /*124*/NULL, 1092f4259b30SLisandro Dalcin NULL, 1093d4002b98SHong Zhang MatInvertBlockDiagonal_MPISELL, 1094f4259b30SLisandro Dalcin NULL, 1095f4259b30SLisandro Dalcin NULL, 1096f4259b30SLisandro Dalcin /*129*/NULL, 1097f4259b30SLisandro Dalcin NULL, 1098f4259b30SLisandro Dalcin NULL, 1099f4259b30SLisandro Dalcin NULL, 1100f4259b30SLisandro Dalcin NULL, 1101f4259b30SLisandro Dalcin /*134*/NULL, 1102f4259b30SLisandro Dalcin NULL, 1103f4259b30SLisandro Dalcin NULL, 1104f4259b30SLisandro Dalcin NULL, 1105f4259b30SLisandro Dalcin NULL, 1106f4259b30SLisandro Dalcin /*139*/NULL, 1107f4259b30SLisandro Dalcin NULL, 1108f4259b30SLisandro Dalcin NULL, 1109d4002b98SHong Zhang MatFDColoringSetUp_MPIXAIJ, 1110f4259b30SLisandro Dalcin NULL, 1111d70f29a3SPierre Jolivet /*144*/NULL, 1112d70f29a3SPierre Jolivet NULL, 1113d70f29a3SPierre Jolivet NULL, 1114d70f29a3SPierre Jolivet NULL 1115d4002b98SHong Zhang }; 1116d4002b98SHong Zhang 1117d4002b98SHong Zhang /* ----------------------------------------------------------------------------------------*/ 1118d4002b98SHong Zhang 1119d4002b98SHong Zhang PetscErrorCode MatStoreValues_MPISELL(Mat mat) 1120d4002b98SHong Zhang { 1121d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1122d4002b98SHong Zhang 1123d4002b98SHong Zhang PetscFunctionBegin; 11249566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->A)); 11259566063dSJacob Faibussowitsch PetscCall(MatStoreValues(sell->B)); 1126d4002b98SHong Zhang PetscFunctionReturn(0); 1127d4002b98SHong Zhang } 1128d4002b98SHong Zhang 1129d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_MPISELL(Mat mat) 1130d4002b98SHong Zhang { 1131d4002b98SHong Zhang Mat_MPISELL *sell=(Mat_MPISELL*)mat->data; 1132d4002b98SHong Zhang 1133d4002b98SHong Zhang PetscFunctionBegin; 11349566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->A)); 11359566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(sell->B)); 1136d4002b98SHong Zhang PetscFunctionReturn(0); 1137d4002b98SHong Zhang } 1138d4002b98SHong Zhang 1139d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[]) 1140d4002b98SHong Zhang { 1141d4002b98SHong Zhang Mat_MPISELL *b; 1142d4002b98SHong Zhang 1143d4002b98SHong Zhang PetscFunctionBegin; 11449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 11459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 1146d4002b98SHong Zhang b = (Mat_MPISELL*)B->data; 1147d4002b98SHong Zhang 1148d4002b98SHong Zhang if (!B->preallocated) { 1149d4002b98SHong Zhang /* Explicitly create 2 MATSEQSELL matrices. */ 11509566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 11519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 11529566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A,B,B)); 11539566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQSELL)); 11549566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 11559566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 11569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N)); 11579566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B,B,B)); 11589566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQSELL)); 11599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 1160d4002b98SHong Zhang } 1161d4002b98SHong Zhang 11629566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->A,d_rlenmax,d_rlen)); 11639566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(b->B,o_rlenmax,o_rlen)); 1164d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 1165d4002b98SHong Zhang B->was_assembled = PETSC_FALSE; 1166d4002b98SHong Zhang /* 1167d4002b98SHong Zhang critical for MatAssemblyEnd to work. 1168d4002b98SHong Zhang MatAssemblyBegin checks it to set up was_assembled 1169d4002b98SHong Zhang and MatAssemblyEnd checks was_assembled to determine whether to build garray 1170d4002b98SHong Zhang */ 1171d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1172d4002b98SHong Zhang PetscFunctionReturn(0); 1173d4002b98SHong Zhang } 1174d4002b98SHong Zhang 1175d4002b98SHong Zhang PetscErrorCode MatDuplicate_MPISELL(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1176d4002b98SHong Zhang { 1177d4002b98SHong Zhang Mat mat; 1178d4002b98SHong Zhang Mat_MPISELL *a,*oldmat=(Mat_MPISELL*)matin->data; 1179d4002b98SHong Zhang 1180d4002b98SHong Zhang PetscFunctionBegin; 1181f4259b30SLisandro Dalcin *newmat = NULL; 11829566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 11839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 11849566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat,matin,matin)); 11859566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 1186d4002b98SHong Zhang a = (Mat_MPISELL*)mat->data; 1187d4002b98SHong Zhang 1188d4002b98SHong Zhang mat->factortype = matin->factortype; 1189d4002b98SHong Zhang mat->assembled = PETSC_TRUE; 1190d4002b98SHong Zhang mat->insertmode = NOT_SET_VALUES; 1191d4002b98SHong Zhang mat->preallocated = PETSC_TRUE; 1192d4002b98SHong Zhang 1193d4002b98SHong Zhang a->size = oldmat->size; 1194d4002b98SHong Zhang a->rank = oldmat->rank; 1195d4002b98SHong Zhang a->donotstash = oldmat->donotstash; 1196d4002b98SHong Zhang a->roworiented = oldmat->roworiented; 1197f4259b30SLisandro Dalcin a->rowindices = NULL; 1198f4259b30SLisandro Dalcin a->rowvalues = NULL; 1199d4002b98SHong Zhang a->getrowactive = PETSC_FALSE; 1200d4002b98SHong Zhang 12019566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 12029566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 1203d4002b98SHong Zhang 1204d4002b98SHong Zhang if (oldmat->colmap) { 1205d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE) 12069566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 1207d4002b98SHong Zhang #else 12089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&a->colmap)); 12099566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(mat->cmap->N)*sizeof(PetscInt))); 12109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,mat->cmap->N)); 1211d4002b98SHong Zhang #endif 1212f4259b30SLisandro Dalcin } else a->colmap = NULL; 1213d4002b98SHong Zhang if (oldmat->garray) { 1214d4002b98SHong Zhang PetscInt len; 1215d4002b98SHong Zhang len = oldmat->B->cmap->n; 12169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len+1,&a->garray)); 12179566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 12189566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 1219f4259b30SLisandro Dalcin } else a->garray = NULL; 1220d4002b98SHong Zhang 12219566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 12229566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 12239566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 12249566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 12259566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 12269566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 12279566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 12289566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 12299566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 1230d4002b98SHong Zhang *newmat = mat; 1231d4002b98SHong Zhang PetscFunctionReturn(0); 1232d4002b98SHong Zhang } 1233d4002b98SHong Zhang 1234d4002b98SHong Zhang /*@C 1235d4002b98SHong Zhang MatMPISELLSetPreallocation - Preallocates memory for a sparse parallel matrix in sell format. 1236d4002b98SHong Zhang For good matrix assembly performance the user should preallocate the matrix storage by 1237d4002b98SHong Zhang setting the parameters d_nz (or d_nnz) and o_nz (or o_nnz). 1238d4002b98SHong Zhang 1239d083f849SBarry Smith Collective 1240d4002b98SHong Zhang 1241d4002b98SHong Zhang Input Parameters: 1242d4002b98SHong Zhang + B - the matrix 1243d4002b98SHong Zhang . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1244d4002b98SHong Zhang (same value is used for all local rows) 1245d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the 1246d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1247d4002b98SHong Zhang or NULL (PETSC_NULL_INTEGER in Fortran), if d_nz is used to specify the nonzero structure. 1248d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1249d4002b98SHong Zhang For matrices that will be factored, you must leave room for (and set) 1250d4002b98SHong Zhang the diagonal entry even if it is zero. 1251d4002b98SHong Zhang . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 1252d4002b98SHong Zhang submatrix (same value is used for all local rows). 1253d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the 1254d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1255d4002b98SHong Zhang each row) or NULL (PETSC_NULL_INTEGER in Fortran), if o_nz is used to specify the nonzero 1256d4002b98SHong Zhang structure. The size of this array is equal to the number 1257d4002b98SHong Zhang of local rows, i.e 'm'. 1258d4002b98SHong Zhang 1259d4002b98SHong Zhang If the *_nnz parameter is given then the *_nz parameter is ignored 1260d4002b98SHong Zhang 1261d4002b98SHong Zhang The stored row and column indices begin with zero. 1262d4002b98SHong Zhang 1263d4002b98SHong Zhang The parallel matrix is partitioned such that the first m0 rows belong to 1264d4002b98SHong Zhang process 0, the next m1 rows belong to process 1, the next m2 rows belong 1265d4002b98SHong Zhang to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 1266d4002b98SHong Zhang 1267d4002b98SHong Zhang The DIAGONAL portion of the local submatrix of a processor can be defined 1268d4002b98SHong Zhang as the submatrix which is obtained by extraction the part corresponding to 1269d4002b98SHong Zhang the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 1270d4002b98SHong Zhang first row that belongs to the processor, r2 is the last row belonging to 1271d4002b98SHong Zhang the this processor, and c1-c2 is range of indices of the local part of a 1272d4002b98SHong Zhang vector suitable for applying the matrix to. This is an mxn matrix. In the 1273d4002b98SHong Zhang common case of a square matrix, the row and column ranges are the same and 1274d4002b98SHong Zhang the DIAGONAL part is also square. The remaining portion of the local 1275d4002b98SHong Zhang submatrix (mxN) constitute the OFF-DIAGONAL portion. 1276d4002b98SHong Zhang 1277d4002b98SHong Zhang If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored. 1278d4002b98SHong Zhang 1279d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 1280d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 1281d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 1282d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 1283d4002b98SHong Zhang 1284d4002b98SHong Zhang Example usage: 1285d4002b98SHong Zhang 1286d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1287d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1288d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1289d4002b98SHong Zhang as follows: 1290d4002b98SHong Zhang 1291d4002b98SHong Zhang .vb 1292d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1293d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1294d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1295d4002b98SHong Zhang ------------------------------------- 1296d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1297d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1298d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1299d4002b98SHong Zhang ------------------------------------- 1300d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1301d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1302d4002b98SHong Zhang .ve 1303d4002b98SHong Zhang 1304d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1305d4002b98SHong Zhang 1306d4002b98SHong Zhang .vb 1307d4002b98SHong Zhang A B C 1308d4002b98SHong Zhang D E F 1309d4002b98SHong Zhang G H I 1310d4002b98SHong Zhang .ve 1311d4002b98SHong Zhang 1312d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1313d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1314d4002b98SHong Zhang 1315d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1316d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1317d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1318d4002b98SHong Zhang 1319d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1320d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1321d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1322d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1323d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1324d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1325d4002b98SHong Zhang 1326d4002b98SHong Zhang When d_nz, o_nz parameters are specified, d_nz storage elements are 1327d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_nz 1328d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1329d4002b98SHong Zhang One way to choose d_nz and o_nz is to use the max nonzerors per local 1330d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1331d4002b98SHong Zhang In this case, the values of d_nz,o_nz are: 1332d4002b98SHong Zhang .vb 1333d4002b98SHong Zhang proc0 : dnz = 2, o_nz = 2 1334d4002b98SHong Zhang proc1 : dnz = 3, o_nz = 2 1335d4002b98SHong Zhang proc2 : dnz = 1, o_nz = 4 1336d4002b98SHong Zhang .ve 1337d4002b98SHong Zhang We are allocating m*(d_nz+o_nz) storage locations for every proc. This 1338d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1339d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1340d4002b98SHong Zhang 34 values. 1341d4002b98SHong Zhang 1342d4002b98SHong Zhang When d_nnz, o_nnz parameters are specified, the storage is specified 1343a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1344d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1345d4002b98SHong Zhang .vb 1346d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1347d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1348d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1349d4002b98SHong Zhang .ve 1350d4002b98SHong Zhang Here the space allocated is according to nz (or maximum values in the nnz 1351d4002b98SHong Zhang if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37 1352d4002b98SHong Zhang 1353d4002b98SHong Zhang Level: intermediate 1354d4002b98SHong Zhang 1355d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSeqSELL(), MatSetValues(), MatCreatesell(), 1356d4002b98SHong Zhang MATMPISELL, MatGetInfo(), PetscSplitOwnership() 1357d4002b98SHong Zhang @*/ 1358d4002b98SHong Zhang PetscErrorCode MatMPISELLSetPreallocation(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 1359d4002b98SHong Zhang { 1360d4002b98SHong Zhang PetscFunctionBegin; 1361d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1362d4002b98SHong Zhang PetscValidType(B,1); 1363cac4c232SBarry Smith PetscTryMethod(B,"MatMPISELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,d_nz,d_nnz,o_nz,o_nnz)); 1364d4002b98SHong Zhang PetscFunctionReturn(0); 1365d4002b98SHong Zhang } 1366d4002b98SHong Zhang 1367ed73aabaSBarry Smith /*MC 1368ed73aabaSBarry Smith MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices, 1369ed73aabaSBarry Smith based on the sliced Ellpack format 1370ed73aabaSBarry Smith 1371ed73aabaSBarry Smith Options Database Keys: 1372ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 1373ed73aabaSBarry Smith 1374ed73aabaSBarry Smith Level: beginner 1375ed73aabaSBarry Smith 1376ed73aabaSBarry Smith .seealso: MatCreateSell(), MATSEQSELL, MATSELL, MATSEQAIJ, MATAIJ, MATMPIAIJ 1377ed73aabaSBarry Smith M*/ 1378ed73aabaSBarry Smith 1379d4002b98SHong Zhang /*@C 1380d4002b98SHong Zhang MatCreateSELL - Creates a sparse parallel matrix in SELL format. 1381d4002b98SHong Zhang 1382d083f849SBarry Smith Collective 1383d4002b98SHong Zhang 1384d4002b98SHong Zhang Input Parameters: 1385d4002b98SHong Zhang + comm - MPI communicator 1386d4002b98SHong Zhang . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1387d4002b98SHong Zhang This value should be the same as the local size used in creating the 1388d4002b98SHong Zhang y vector for the matrix-vector product y = Ax. 1389d4002b98SHong Zhang . n - This value should be the same as the local size used in creating the 1390d4002b98SHong Zhang x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 1391d4002b98SHong Zhang calculated if N is given) For square matrices n is almost always m. 1392d4002b98SHong Zhang . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1393d4002b98SHong Zhang . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 1394d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix 1395d4002b98SHong Zhang (same value is used for all local rows) 1396d4002b98SHong Zhang . d_rlen - array containing the number of nonzeros in the various rows of the 1397d4002b98SHong Zhang DIAGONAL portion of the local submatrix (possibly different for each row) 1398d4002b98SHong Zhang or NULL, if d_rlenmax is used to specify the nonzero structure. 1399d4002b98SHong Zhang The size of this array is equal to the number of local rows, i.e 'm'. 1400d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local 1401d4002b98SHong Zhang submatrix (same value is used for all local rows). 1402d4002b98SHong Zhang - o_rlen - array containing the number of nonzeros in the various rows of the 1403d4002b98SHong Zhang OFF-DIAGONAL portion of the local submatrix (possibly different for 1404d4002b98SHong Zhang each row) or NULL, if o_rlenmax is used to specify the nonzero 1405d4002b98SHong Zhang structure. The size of this array is equal to the number 1406d4002b98SHong Zhang of local rows, i.e 'm'. 1407d4002b98SHong Zhang 1408d4002b98SHong Zhang Output Parameter: 1409d4002b98SHong Zhang . A - the matrix 1410d4002b98SHong Zhang 1411d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1412f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 1413d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 1414d4002b98SHong Zhang 1415d4002b98SHong Zhang Notes: 1416d4002b98SHong Zhang If the *_rlen parameter is given then the *_rlenmax parameter is ignored 1417d4002b98SHong Zhang 1418d4002b98SHong Zhang m,n,M,N parameters specify the size of the matrix, and its partitioning across 1419d4002b98SHong Zhang processors, while d_rlenmax,d_rlen,o_rlenmax,o_rlen parameters specify the approximate 1420d4002b98SHong Zhang storage requirements for this matrix. 1421d4002b98SHong Zhang 1422d4002b98SHong Zhang If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one 1423d4002b98SHong Zhang processor than it must be used on all processors that share the object for 1424d4002b98SHong Zhang that argument. 1425d4002b98SHong Zhang 1426d4002b98SHong Zhang The user MUST specify either the local or global matrix dimensions 1427d4002b98SHong Zhang (possibly both). 1428d4002b98SHong Zhang 1429d4002b98SHong Zhang The parallel matrix is partitioned across processors such that the 1430d4002b98SHong Zhang first m0 rows belong to process 0, the next m1 rows belong to 1431d4002b98SHong Zhang process 1, the next m2 rows belong to process 2 etc.. where 1432d4002b98SHong Zhang m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores 1433d4002b98SHong Zhang values corresponding to [m x N] submatrix. 1434d4002b98SHong Zhang 1435d4002b98SHong Zhang The columns are logically partitioned with the n0 columns belonging 1436d4002b98SHong Zhang to 0th partition, the next n1 columns belonging to the next 1437d4002b98SHong Zhang partition etc.. where n0,n1,n2... are the input parameter 'n'. 1438d4002b98SHong Zhang 1439d4002b98SHong Zhang The DIAGONAL portion of the local submatrix on any given processor 1440d4002b98SHong Zhang is the submatrix corresponding to the rows and columns m,n 1441d4002b98SHong Zhang corresponding to the given processor. i.e diagonal matrix on 1442d4002b98SHong Zhang process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 1443d4002b98SHong Zhang etc. The remaining portion of the local submatrix [m x (N-n)] 1444d4002b98SHong Zhang constitute the OFF-DIAGONAL portion. The example below better 1445d4002b98SHong Zhang illustrates this concept. 1446d4002b98SHong Zhang 1447d4002b98SHong Zhang For a square global matrix we define each processor's diagonal portion 1448d4002b98SHong Zhang to be its local rows and the corresponding columns (a square submatrix); 1449d4002b98SHong Zhang each processor's off-diagonal portion encompasses the remainder of the 1450d4002b98SHong Zhang local matrix (a rectangular submatrix). 1451d4002b98SHong Zhang 1452d4002b98SHong Zhang If o_rlen, d_rlen are specified, then o_rlenmax, and d_rlenmax are ignored. 1453d4002b98SHong Zhang 1454d4002b98SHong Zhang When calling this routine with a single process communicator, a matrix of 1455d4002b98SHong Zhang type SEQSELL is returned. If a matrix of type MATMPISELL is desired for this 1456d4002b98SHong Zhang type of communicator, use the construction mechanism: 1457d4002b98SHong Zhang MatCreate(...,&A); MatSetType(A,MATMPISELL); MatSetSizes(A, m,n,M,N); MatMPISELLSetPreallocation(A,...); 1458d4002b98SHong Zhang 1459d4002b98SHong Zhang Options Database Keys: 1460d4002b98SHong Zhang - -mat_sell_oneindex - Internally use indexing starting at 1 1461d4002b98SHong Zhang rather than 0. Note that when calling MatSetValues(), 1462d4002b98SHong Zhang the user still MUST index entries starting at 0! 1463d4002b98SHong Zhang 1464d4002b98SHong Zhang Example usage: 1465d4002b98SHong Zhang 1466d4002b98SHong Zhang Consider the following 8x8 matrix with 34 non-zero values, that is 1467d4002b98SHong Zhang assembled across 3 processors. Lets assume that proc0 owns 3 rows, 1468d4002b98SHong Zhang proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 1469d4002b98SHong Zhang as follows: 1470d4002b98SHong Zhang 1471d4002b98SHong Zhang .vb 1472d4002b98SHong Zhang 1 2 0 | 0 3 0 | 0 4 1473d4002b98SHong Zhang Proc0 0 5 6 | 7 0 0 | 8 0 1474d4002b98SHong Zhang 9 0 10 | 11 0 0 | 12 0 1475d4002b98SHong Zhang ------------------------------------- 1476d4002b98SHong Zhang 13 0 14 | 15 16 17 | 0 0 1477d4002b98SHong Zhang Proc1 0 18 0 | 19 20 21 | 0 0 1478d4002b98SHong Zhang 0 0 0 | 22 23 0 | 24 0 1479d4002b98SHong Zhang ------------------------------------- 1480d4002b98SHong Zhang Proc2 25 26 27 | 0 0 28 | 29 0 1481d4002b98SHong Zhang 30 0 0 | 31 32 33 | 0 34 1482d4002b98SHong Zhang .ve 1483d4002b98SHong Zhang 1484d4002b98SHong Zhang This can be represented as a collection of submatrices as: 1485d4002b98SHong Zhang 1486d4002b98SHong Zhang .vb 1487d4002b98SHong Zhang A B C 1488d4002b98SHong Zhang D E F 1489d4002b98SHong Zhang G H I 1490d4002b98SHong Zhang .ve 1491d4002b98SHong Zhang 1492d4002b98SHong Zhang Where the submatrices A,B,C are owned by proc0, D,E,F are 1493d4002b98SHong Zhang owned by proc1, G,H,I are owned by proc2. 1494d4002b98SHong Zhang 1495d4002b98SHong Zhang The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1496d4002b98SHong Zhang The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 1497d4002b98SHong Zhang The 'M','N' parameters are 8,8, and have the same values on all procs. 1498d4002b98SHong Zhang 1499d4002b98SHong Zhang The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 1500d4002b98SHong Zhang submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 1501d4002b98SHong Zhang corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 1502d4002b98SHong Zhang Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 1503d4002b98SHong Zhang part as SeqSELL matrices. for eg: proc1 will store [E] as a SeqSELL 1504d4002b98SHong Zhang matrix, ans [DF] as another SeqSELL matrix. 1505d4002b98SHong Zhang 1506d4002b98SHong Zhang When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are 1507d4002b98SHong Zhang allocated for every row of the local diagonal submatrix, and o_rlenmax 1508d4002b98SHong Zhang storage locations are allocated for every row of the OFF-DIAGONAL submat. 1509d4002b98SHong Zhang One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local 1510d4002b98SHong Zhang rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 1511d4002b98SHong Zhang In this case, the values of d_rlenmax,o_rlenmax are: 1512d4002b98SHong Zhang .vb 1513d4002b98SHong Zhang proc0 : d_rlenmax = 2, o_rlenmax = 2 1514d4002b98SHong Zhang proc1 : d_rlenmax = 3, o_rlenmax = 2 1515d4002b98SHong Zhang proc2 : d_rlenmax = 1, o_rlenmax = 4 1516d4002b98SHong Zhang .ve 1517d4002b98SHong Zhang We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This 1518d4002b98SHong Zhang translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 1519d4002b98SHong Zhang for proc3. i.e we are using 12+15+10=37 storage locations to store 1520d4002b98SHong Zhang 34 values. 1521d4002b98SHong Zhang 1522d4002b98SHong Zhang When d_rlen, o_rlen parameters are specified, the storage is specified 1523a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 1524d4002b98SHong Zhang In the above case the values for d_nnz,o_nnz are: 1525d4002b98SHong Zhang .vb 1526d4002b98SHong Zhang proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 1527d4002b98SHong Zhang proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 1528d4002b98SHong Zhang proc2: d_nnz = [1,1] and o_nnz = [4,4] 1529d4002b98SHong Zhang .ve 1530d4002b98SHong Zhang Here the space allocated is still 37 though there are 34 nonzeros because 1531d4002b98SHong Zhang the allocation is always done according to rlenmax. 1532d4002b98SHong Zhang 1533d4002b98SHong Zhang Level: intermediate 1534d4002b98SHong Zhang 1535d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSeqSELL(), MatSetValues(), MatMPISELLSetPreallocation(), MatMPISELLSetPreallocationSELL(), 1536d4002b98SHong Zhang MATMPISELL, MatCreateMPISELLWithArrays() 1537d4002b98SHong Zhang @*/ 1538d4002b98SHong Zhang PetscErrorCode MatCreateSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_rlenmax,const PetscInt d_rlen[],PetscInt o_rlenmax,const PetscInt o_rlen[],Mat *A) 1539d4002b98SHong Zhang { 1540d4002b98SHong Zhang PetscMPIInt size; 1541d4002b98SHong Zhang 1542d4002b98SHong Zhang PetscFunctionBegin; 15439566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 15449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 15459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 1546d4002b98SHong Zhang if (size > 1) { 15479566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPISELL)); 15489566063dSJacob Faibussowitsch PetscCall(MatMPISELLSetPreallocation(*A,d_rlenmax,d_rlen,o_rlenmax,o_rlen)); 1549d4002b98SHong Zhang } else { 15509566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSELL)); 15519566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(*A,d_rlenmax,d_rlen)); 1552d4002b98SHong Zhang } 1553d4002b98SHong Zhang PetscFunctionReturn(0); 1554d4002b98SHong Zhang } 1555d4002b98SHong Zhang 1556d4002b98SHong Zhang PetscErrorCode MatMPISELLGetSeqSELL(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 1557d4002b98SHong Zhang { 1558d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1559d4002b98SHong Zhang PetscBool flg; 1560d4002b98SHong Zhang 1561d4002b98SHong Zhang PetscFunctionBegin; 15629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&flg)); 156328b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPISELL matrix as input"); 1564d4002b98SHong Zhang if (Ad) *Ad = a->A; 1565d4002b98SHong Zhang if (Ao) *Ao = a->B; 1566d4002b98SHong Zhang if (colmap) *colmap = a->garray; 1567d4002b98SHong Zhang PetscFunctionReturn(0); 1568d4002b98SHong Zhang } 1569d4002b98SHong Zhang 1570d4002b98SHong Zhang /*@C 1571d4002b98SHong Zhang MatMPISELLGetLocalMatCondensed - Creates a SeqSELL matrix from an MATMPISELL matrix by taking all its local rows and NON-ZERO columns 1572d4002b98SHong Zhang 1573d4002b98SHong Zhang Not Collective 1574d4002b98SHong Zhang 1575d4002b98SHong Zhang Input Parameters: 1576d4002b98SHong Zhang + A - the matrix 1577d4002b98SHong Zhang . scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 1578d4002b98SHong Zhang - row, col - index sets of rows and columns to extract (or NULL) 1579d4002b98SHong Zhang 1580d4002b98SHong Zhang Output Parameter: 1581d4002b98SHong Zhang . A_loc - the local sequential matrix generated 1582d4002b98SHong Zhang 1583d4002b98SHong Zhang Level: developer 1584d4002b98SHong Zhang 1585d4002b98SHong Zhang .seealso: MatGetOwnershipRange(), MatMPISELLGetLocalMat() 1586d4002b98SHong Zhang 1587d4002b98SHong Zhang @*/ 1588d4002b98SHong Zhang PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A,MatReuse scall,IS *row,IS *col,Mat *A_loc) 1589d4002b98SHong Zhang { 1590d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1591d4002b98SHong Zhang PetscInt i,start,end,ncols,nzA,nzB,*cmap,imark,*idx; 1592d4002b98SHong Zhang IS isrowa,iscola; 1593d4002b98SHong Zhang Mat *aloc; 1594d4002b98SHong Zhang PetscBool match; 1595d4002b98SHong Zhang 1596d4002b98SHong Zhang PetscFunctionBegin; 15979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPISELL,&match)); 159828b400f6SJacob Faibussowitsch PetscCheck(match,PetscObjectComm((PetscObject)A), PETSC_ERR_SUP,"Requires MATMPISELL matrix as input"); 15999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed,A,0,0,0)); 1600d4002b98SHong Zhang if (!row) { 1601d4002b98SHong Zhang start = A->rmap->rstart; end = A->rmap->rend; 16029566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&isrowa)); 1603d4002b98SHong Zhang } else { 1604d4002b98SHong Zhang isrowa = *row; 1605d4002b98SHong Zhang } 1606d4002b98SHong Zhang if (!col) { 1607d4002b98SHong Zhang start = A->cmap->rstart; 1608d4002b98SHong Zhang cmap = a->garray; 1609d4002b98SHong Zhang nzA = a->A->cmap->n; 1610d4002b98SHong Zhang nzB = a->B->cmap->n; 16119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA+nzB, &idx)); 1612d4002b98SHong Zhang ncols = 0; 1613d4002b98SHong Zhang for (i=0; i<nzB; i++) { 1614d4002b98SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 1615d4002b98SHong Zhang else break; 1616d4002b98SHong Zhang } 1617d4002b98SHong Zhang imark = i; 1618d4002b98SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; 1619d4002b98SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; 16209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&iscola)); 1621d4002b98SHong Zhang } else { 1622d4002b98SHong Zhang iscola = *col; 1623d4002b98SHong Zhang } 1624d4002b98SHong Zhang if (scall != MAT_INITIAL_MATRIX) { 16259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1,&aloc)); 1626d4002b98SHong Zhang aloc[0] = *A_loc; 1627d4002b98SHong Zhang } 16289566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A,1,&isrowa,&iscola,scall,&aloc)); 1629d4002b98SHong Zhang *A_loc = aloc[0]; 16309566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 1631d4002b98SHong Zhang if (!row) { 16329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowa)); 1633d4002b98SHong Zhang } 1634d4002b98SHong Zhang if (!col) { 16359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscola)); 1636d4002b98SHong Zhang } 16379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed,A,0,0,0)); 1638d4002b98SHong Zhang PetscFunctionReturn(0); 1639d4002b98SHong Zhang } 1640d4002b98SHong Zhang 1641d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 1642d4002b98SHong Zhang 1643d4002b98SHong Zhang PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1644d4002b98SHong Zhang { 1645d4002b98SHong Zhang Mat_MPISELL *a=(Mat_MPISELL*)A->data; 1646d4002b98SHong Zhang Mat B; 1647d4002b98SHong Zhang Mat_MPIAIJ *b; 1648d4002b98SHong Zhang 1649d4002b98SHong Zhang PetscFunctionBegin; 165028b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1651d4002b98SHong Zhang 165294a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 165394a8b381SRichard Tran Mills B = *newmat; 165494a8b381SRichard Tran Mills } else { 16559566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 16569566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 16579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 16589566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 16599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 16609566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 166194a8b381SRichard Tran Mills } 1662d4002b98SHong Zhang b = (Mat_MPIAIJ*) B->data; 166394a8b381SRichard Tran Mills 166494a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 16659566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 16669566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 166794a8b381SRichard Tran Mills } else { 16689566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 16699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 16709566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISELL(A)); 16719566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 16729566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 16739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 16749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 16759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 167794a8b381SRichard Tran Mills } 1678d4002b98SHong Zhang 1679d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16809566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1681d4002b98SHong Zhang } else { 1682d4002b98SHong Zhang *newmat = B; 1683d4002b98SHong Zhang } 1684d4002b98SHong Zhang PetscFunctionReturn(0); 1685d4002b98SHong Zhang } 1686d4002b98SHong Zhang 1687d4002b98SHong Zhang PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 1688d4002b98SHong Zhang { 1689d4002b98SHong Zhang Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 1690d4002b98SHong Zhang Mat B; 1691d4002b98SHong Zhang Mat_MPISELL *b; 1692d4002b98SHong Zhang 1693d4002b98SHong Zhang PetscFunctionBegin; 169428b400f6SJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 1695d4002b98SHong Zhang 169694a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 169794a8b381SRichard Tran Mills B = *newmat; 169894a8b381SRichard Tran Mills } else { 16999566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 17009566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPISELL)); 17019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 17029566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 17039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 17049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 170594a8b381SRichard Tran Mills } 1706d4002b98SHong Zhang b = (Mat_MPISELL*) B->data; 170794a8b381SRichard Tran Mills 170894a8b381SRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 17099566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A)); 17109566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B)); 171194a8b381SRichard Tran Mills } else { 17129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 17139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 17149566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(A)); 17159566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A)); 17169566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B)); 17179566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 17189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 17199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 17209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 172194a8b381SRichard Tran Mills } 1722d4002b98SHong Zhang 1723d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 17249566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 1725d4002b98SHong Zhang } else { 1726d4002b98SHong Zhang *newmat = B; 1727d4002b98SHong Zhang } 1728d4002b98SHong Zhang PetscFunctionReturn(0); 1729d4002b98SHong Zhang } 1730d4002b98SHong Zhang 1731d4002b98SHong Zhang PetscErrorCode MatSOR_MPISELL(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1732d4002b98SHong Zhang { 1733d4002b98SHong Zhang Mat_MPISELL *mat=(Mat_MPISELL*)matin->data; 1734f4259b30SLisandro Dalcin Vec bb1=NULL; 1735d4002b98SHong Zhang 1736d4002b98SHong Zhang PetscFunctionBegin; 1737d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) { 17389566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1739d4002b98SHong Zhang PetscFunctionReturn(0); 1740d4002b98SHong Zhang } 1741d4002b98SHong Zhang 1742d4002b98SHong Zhang if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) { 17439566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 1744d4002b98SHong Zhang } 1745d4002b98SHong Zhang 1746d4002b98SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1747d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1749d4002b98SHong Zhang its--; 1750d4002b98SHong Zhang } 1751d4002b98SHong Zhang 1752d4002b98SHong Zhang while (its--) { 17539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1755d4002b98SHong Zhang 1756d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1759d4002b98SHong Zhang 1760d4002b98SHong Zhang /* local sweep */ 17619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 1762d4002b98SHong Zhang } 1763d4002b98SHong Zhang } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1764d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17659566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1766d4002b98SHong Zhang its--; 1767d4002b98SHong Zhang } 1768d4002b98SHong Zhang while (its--) { 17699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1771d4002b98SHong Zhang 1772d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17739566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17749566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1775d4002b98SHong Zhang 1776d4002b98SHong Zhang /* local sweep */ 17779566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 1778d4002b98SHong Zhang } 1779d4002b98SHong Zhang } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1780d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 17819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 1782d4002b98SHong Zhang its--; 1783d4002b98SHong Zhang } 1784d4002b98SHong Zhang while (its--) { 17859566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17869566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 1787d4002b98SHong Zhang 1788d4002b98SHong Zhang /* update rhs: bb1 = bb - B*x */ 17899566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 17909566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 1791d4002b98SHong Zhang 1792d4002b98SHong Zhang /* local sweep */ 17939566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 1794d4002b98SHong Zhang } 1795d4002b98SHong Zhang } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel SOR not supported"); 1796d4002b98SHong Zhang 17979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1798d4002b98SHong Zhang 1799d4002b98SHong Zhang matin->factorerrortype = mat->A->factorerrortype; 1800d4002b98SHong Zhang PetscFunctionReturn(0); 1801d4002b98SHong Zhang } 1802d4002b98SHong Zhang 1803d4002b98SHong Zhang /*MC 1804d4002b98SHong Zhang MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices. 1805d4002b98SHong Zhang 1806d4002b98SHong Zhang Options Database Keys: 1807d4002b98SHong Zhang . -mat_type MPISELL - sets the matrix type to "MPISELL" during a call to MatSetFromOptions() 1808d4002b98SHong Zhang 1809d4002b98SHong Zhang Level: beginner 1810d4002b98SHong Zhang 1811d4002b98SHong Zhang .seealso: MatCreateSELL() 1812d4002b98SHong Zhang M*/ 1813d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B) 1814d4002b98SHong Zhang { 1815d4002b98SHong Zhang Mat_MPISELL *b; 1816d4002b98SHong Zhang PetscMPIInt size; 1817d4002b98SHong Zhang 1818d4002b98SHong Zhang PetscFunctionBegin; 18199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 18209566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 1821d4002b98SHong Zhang B->data = (void*)b; 18229566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 1823d4002b98SHong Zhang B->assembled = PETSC_FALSE; 1824d4002b98SHong Zhang B->insertmode = NOT_SET_VALUES; 1825d4002b98SHong Zhang b->size = size; 18269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 1827d4002b98SHong Zhang /* build cache for off array entries formed */ 18289566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 1829d4002b98SHong Zhang 1830d4002b98SHong Zhang b->donotstash = PETSC_FALSE; 1831f4259b30SLisandro Dalcin b->colmap = NULL; 1832f4259b30SLisandro Dalcin b->garray = NULL; 1833d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1834d4002b98SHong Zhang 1835d4002b98SHong Zhang /* stuff used for matrix vector multiply */ 1836d4002b98SHong Zhang b->lvec = NULL; 1837d4002b98SHong Zhang b->Mvctx = NULL; 1838d4002b98SHong Zhang 1839d4002b98SHong Zhang /* stuff for MatGetRow() */ 1840f4259b30SLisandro Dalcin b->rowindices = NULL; 1841f4259b30SLisandro Dalcin b->rowvalues = NULL; 1842d4002b98SHong Zhang b->getrowactive = PETSC_FALSE; 1843d4002b98SHong Zhang 18449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPISELL)); 18459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPISELL)); 18469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_MPISELL)); 18479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPISELLSetPreallocation_C",MatMPISELLSetPreallocation_MPISELL)); 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpisell_mpiaij_C",MatConvert_MPISELL_MPIAIJ)); 18499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPISELL)); 18509566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPISELL)); 1851d4002b98SHong Zhang PetscFunctionReturn(0); 1852d4002b98SHong Zhang } 1853