xref: /petsc/src/mat/impls/sell/mpi/mpisell.c (revision f4f49eeac7efa77fffa46b7ff95a3ed169f659ed)
1d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>   /*I "petscmat.h" I*/
2d4002b98SHong Zhang #include <../src/mat/impls/sell/mpi/mpisell.h> /*I "petscmat.h" I*/
3d4002b98SHong Zhang #include <petsc/private/vecimpl.h>
4d4002b98SHong Zhang #include <petsc/private/isimpl.h>
5d4002b98SHong Zhang #include <petscblaslapack.h>
6d4002b98SHong Zhang #include <petscsf.h>
7d4002b98SHong Zhang 
8d4002b98SHong Zhang /*MC
9d4002b98SHong Zhang    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices.
10d4002b98SHong Zhang 
1111a5261eSBarry Smith    This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator,
1211a5261eSBarry Smith    and `MATMPISELL` otherwise.  As a result, for single process communicators,
1311a5261eSBarry Smith   `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported
14d4002b98SHong Zhang   for communicators controlling multiple processes.  It is recommended that you call both of
15d4002b98SHong Zhang   the above preallocation routines for simplicity.
16d4002b98SHong Zhang 
17d4002b98SHong Zhang    Options Database Keys:
1820f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()`
19d4002b98SHong Zhang 
20d4002b98SHong Zhang   Level: beginner
21d4002b98SHong Zhang 
2267be906fSBarry Smith .seealso: `Mat`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSELL()`, `MatCreateSeqSELL()`, `MATSEQSELL`, `MATMPISELL`
23d4002b98SHong Zhang M*/
24d4002b98SHong Zhang 
25ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPISELL(Mat Y, Vec D, InsertMode is)
26d71ae5a4SJacob Faibussowitsch {
27d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)Y->data;
28d4002b98SHong Zhang 
29d4002b98SHong Zhang   PetscFunctionBegin;
30d4002b98SHong Zhang   if (Y->assembled && Y->rmap->rstart == Y->cmap->rstart && Y->rmap->rend == Y->cmap->rend) {
319566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(sell->A, D, is));
32d4002b98SHong Zhang   } else {
339566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
34d4002b98SHong Zhang   }
353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36d4002b98SHong Zhang }
37d4002b98SHong Zhang 
38d4002b98SHong Zhang /*
39d4002b98SHong Zhang   Local utility routine that creates a mapping from the global column
40d4002b98SHong Zhang number to the local number in the off-diagonal part of the local
41d4002b98SHong Zhang storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
42d4002b98SHong Zhang a slightly higher hash table cost; without it it is not scalable (each processor
43da81f932SPierre Jolivet has an order N integer array but is fast to access.
44d4002b98SHong Zhang */
45d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPISELL_Private(Mat mat)
46d71ae5a4SJacob Faibussowitsch {
47d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
48d4002b98SHong Zhang   PetscInt     n    = sell->B->cmap->n, i;
49d4002b98SHong Zhang 
50d4002b98SHong Zhang   PetscFunctionBegin;
5128b400f6SJacob Faibussowitsch   PetscCheck(sell->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPISELL Matrix was assembled but is missing garray");
52d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
53eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &sell->colmap));
54c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(sell->colmap, sell->garray[i] + 1, i + 1));
55d4002b98SHong Zhang #else
569566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &sell->colmap));
57d4002b98SHong Zhang   for (i = 0; i < n; i++) sell->colmap[sell->garray[i]] = i + 1;
58d4002b98SHong Zhang #endif
593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60d4002b98SHong Zhang }
61d4002b98SHong Zhang 
62d4002b98SHong Zhang #define MatSetValues_SeqSELL_A_Private(row, col, value, addv, orow, ocol) \
63d4002b98SHong Zhang   { \
64d4002b98SHong Zhang     if (col <= lastcol1) low1 = 0; \
65d4002b98SHong Zhang     else high1 = nrow1; \
66d4002b98SHong Zhang     lastcol1 = col; \
67d4002b98SHong Zhang     while (high1 - low1 > 5) { \
68d4002b98SHong Zhang       t = (low1 + high1) / 2; \
694f8ff0b3SHong Zhang       if (cp1[sliceheight * t] > col) high1 = t; \
70d4002b98SHong Zhang       else low1 = t; \
71d4002b98SHong Zhang     } \
72d4002b98SHong Zhang     for (_i = low1; _i < high1; _i++) { \
734f8ff0b3SHong Zhang       if (cp1[sliceheight * _i] > col) break; \
744f8ff0b3SHong Zhang       if (cp1[sliceheight * _i] == col) { \
754f8ff0b3SHong Zhang         if (addv == ADD_VALUES) vp1[sliceheight * _i] += value; \
764f8ff0b3SHong Zhang         else vp1[sliceheight * _i] = value; \
772d1451d4SHong Zhang         inserted = PETSC_TRUE; \
78d4002b98SHong Zhang         goto a_noinsert; \
79d4002b98SHong Zhang       } \
80d4002b98SHong Zhang     } \
819371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
829371c9d4SSatish Balay       low1  = 0; \
839371c9d4SSatish Balay       high1 = nrow1; \
849371c9d4SSatish Balay       goto a_noinsert; \
859371c9d4SSatish Balay     } \
869371c9d4SSatish Balay     if (nonew == 1) { \
879371c9d4SSatish Balay       low1  = 0; \
889371c9d4SSatish Balay       high1 = nrow1; \
899371c9d4SSatish Balay       goto a_noinsert; \
909371c9d4SSatish Balay     } \
9108401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
9207e43b41SHong Zhang     MatSeqXSELLReallocateSELL(A, am, 1, nrow1, a->sliidx, a->sliceheight, row / sliceheight, row, col, a->colidx, a->val, cp1, vp1, nonew, MatScalar); \
93d4002b98SHong Zhang     /* shift up all the later entries in this row */ \
94d4002b98SHong Zhang     for (ii = nrow1 - 1; ii >= _i; ii--) { \
954f8ff0b3SHong Zhang       cp1[sliceheight * (ii + 1)] = cp1[sliceheight * ii]; \
964f8ff0b3SHong Zhang       vp1[sliceheight * (ii + 1)] = vp1[sliceheight * ii]; \
97d4002b98SHong Zhang     } \
984f8ff0b3SHong Zhang     cp1[sliceheight * _i] = col; \
994f8ff0b3SHong Zhang     vp1[sliceheight * _i] = value; \
1009371c9d4SSatish Balay     a->nz++; \
1019371c9d4SSatish Balay     nrow1++; \
1029371c9d4SSatish Balay     A->nonzerostate++; \
103d4002b98SHong Zhang   a_noinsert:; \
104d4002b98SHong Zhang     a->rlen[row] = nrow1; \
105d4002b98SHong Zhang   }
106d4002b98SHong Zhang 
107d4002b98SHong Zhang #define MatSetValues_SeqSELL_B_Private(row, col, value, addv, orow, ocol) \
108d4002b98SHong Zhang   { \
109d4002b98SHong Zhang     if (col <= lastcol2) low2 = 0; \
110d4002b98SHong Zhang     else high2 = nrow2; \
111d4002b98SHong Zhang     lastcol2 = col; \
112d4002b98SHong Zhang     while (high2 - low2 > 5) { \
113d4002b98SHong Zhang       t = (low2 + high2) / 2; \
1144f8ff0b3SHong Zhang       if (cp2[sliceheight * t] > col) high2 = t; \
115d4002b98SHong Zhang       else low2 = t; \
116d4002b98SHong Zhang     } \
117d4002b98SHong Zhang     for (_i = low2; _i < high2; _i++) { \
1184f8ff0b3SHong Zhang       if (cp2[sliceheight * _i] > col) break; \
1194f8ff0b3SHong Zhang       if (cp2[sliceheight * _i] == col) { \
1204f8ff0b3SHong Zhang         if (addv == ADD_VALUES) vp2[sliceheight * _i] += value; \
1214f8ff0b3SHong Zhang         else vp2[sliceheight * _i] = value; \
1222d1451d4SHong Zhang         inserted = PETSC_TRUE; \
123d4002b98SHong Zhang         goto b_noinsert; \
124d4002b98SHong Zhang       } \
125d4002b98SHong Zhang     } \
1269371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
1279371c9d4SSatish Balay       low2  = 0; \
1289371c9d4SSatish Balay       high2 = nrow2; \
1299371c9d4SSatish Balay       goto b_noinsert; \
1309371c9d4SSatish Balay     } \
1319371c9d4SSatish Balay     if (nonew == 1) { \
1329371c9d4SSatish Balay       low2  = 0; \
1339371c9d4SSatish Balay       high2 = nrow2; \
1349371c9d4SSatish Balay       goto b_noinsert; \
1359371c9d4SSatish Balay     } \
13608401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
13707e43b41SHong Zhang     MatSeqXSELLReallocateSELL(B, bm, 1, nrow2, b->sliidx, b->sliceheight, row / sliceheight, row, col, b->colidx, b->val, cp2, vp2, nonew, MatScalar); \
138d4002b98SHong Zhang     /* shift up all the later entries in this row */ \
139d4002b98SHong Zhang     for (ii = nrow2 - 1; ii >= _i; ii--) { \
1404f8ff0b3SHong Zhang       cp2[sliceheight * (ii + 1)] = cp2[sliceheight * ii]; \
1414f8ff0b3SHong Zhang       vp2[sliceheight * (ii + 1)] = vp2[sliceheight * ii]; \
142d4002b98SHong Zhang     } \
1434f8ff0b3SHong Zhang     cp2[sliceheight * _i] = col; \
1444f8ff0b3SHong Zhang     vp2[sliceheight * _i] = value; \
1459371c9d4SSatish Balay     b->nz++; \
1469371c9d4SSatish Balay     nrow2++; \
1479371c9d4SSatish Balay     B->nonzerostate++; \
148d4002b98SHong Zhang   b_noinsert:; \
149d4002b98SHong Zhang     b->rlen[row] = nrow2; \
150d4002b98SHong Zhang   }
151d4002b98SHong Zhang 
15243b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISELL(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
153d71ae5a4SJacob Faibussowitsch {
154d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
155d4002b98SHong Zhang   PetscScalar  value;
156d4002b98SHong Zhang   PetscInt     i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, shift1, shift2;
157d4002b98SHong Zhang   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
158d4002b98SHong Zhang   PetscBool    roworiented = sell->roworiented;
159d4002b98SHong Zhang 
160d4002b98SHong Zhang   /* Some Variables required in the macro */
161d4002b98SHong Zhang   Mat          A                 = sell->A;
162d4002b98SHong Zhang   Mat_SeqSELL *a                 = (Mat_SeqSELL *)A->data;
163d4002b98SHong Zhang   PetscBool    ignorezeroentries = a->ignorezeroentries, found;
164d4002b98SHong Zhang   Mat          B                 = sell->B;
165d4002b98SHong Zhang   Mat_SeqSELL *b                 = (Mat_SeqSELL *)B->data;
16607e43b41SHong Zhang   PetscInt    *cp1, *cp2, ii, _i, nrow1, nrow2, low1, high1, low2, high2, t, lastcol1, lastcol2, sliceheight = a->sliceheight;
167d4002b98SHong Zhang   MatScalar   *vp1, *vp2;
168d4002b98SHong Zhang 
169d4002b98SHong Zhang   PetscFunctionBegin;
170d4002b98SHong Zhang   for (i = 0; i < m; i++) {
171d4002b98SHong Zhang     if (im[i] < 0) continue;
1726bdcaf15SBarry Smith     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
173d4002b98SHong Zhang     if (im[i] >= rstart && im[i] < rend) {
174d4002b98SHong Zhang       row      = im[i] - rstart;
175d4002b98SHong Zhang       lastcol1 = -1;
17607e43b41SHong Zhang       shift1   = a->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */
1778e3a54c0SPierre Jolivet       cp1      = PetscSafePointerPlusOffset(a->colidx, shift1);
1788e3a54c0SPierre Jolivet       vp1      = PetscSafePointerPlusOffset(a->val, shift1);
179d4002b98SHong Zhang       nrow1    = a->rlen[row];
180d4002b98SHong Zhang       low1     = 0;
181d4002b98SHong Zhang       high1    = nrow1;
182d4002b98SHong Zhang       lastcol2 = -1;
18307e43b41SHong Zhang       shift2   = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */
1848e3a54c0SPierre Jolivet       cp2      = PetscSafePointerPlusOffset(b->colidx, shift2);
1858e3a54c0SPierre Jolivet       vp2      = PetscSafePointerPlusOffset(b->val, shift2);
186d4002b98SHong Zhang       nrow2    = b->rlen[row];
187d4002b98SHong Zhang       low2     = 0;
188d4002b98SHong Zhang       high2    = nrow2;
189d4002b98SHong Zhang 
190d4002b98SHong Zhang       for (j = 0; j < n; j++) {
191d4002b98SHong Zhang         if (roworiented) value = v[i * n + j];
192d4002b98SHong Zhang         else value = v[i + j * m];
193d4002b98SHong Zhang         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES)) continue;
194d4002b98SHong Zhang         if (in[j] >= cstart && in[j] < cend) {
195d4002b98SHong Zhang           col = in[j] - cstart;
196d4002b98SHong Zhang           MatSetValue_SeqSELL_Private(A, row, col, value, addv, im[i], in[j], cp1, vp1, lastcol1, low1, high1); /* set one value */
1972d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
1982d1451d4SHong Zhang           if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) A->offloadmask = PETSC_OFFLOAD_CPU;
1992d1451d4SHong Zhang #endif
200f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
201f7d195e4SLawrence Mitchell           continue;
202f7d195e4SLawrence Mitchell         } else {
203f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
204d4002b98SHong Zhang           if (mat->was_assembled) {
20548a46eb9SPierre Jolivet             if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat));
206d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
207eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(sell->colmap, in[j] + 1, 0, &col));
208d4002b98SHong Zhang             col--;
209d4002b98SHong Zhang #else
210d4002b98SHong Zhang             col = sell->colmap[in[j]] - 1;
211d4002b98SHong Zhang #endif
212*f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqSELL *)sell->B->data)->nonew) {
2139566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPISELL(mat));
214d4002b98SHong Zhang               col = in[j];
215d4002b98SHong Zhang               /* Reinitialize the variables required by MatSetValues_SeqSELL_B_Private() */
216d4002b98SHong Zhang               B      = sell->B;
217d4002b98SHong Zhang               b      = (Mat_SeqSELL *)B->data;
21807e43b41SHong Zhang               shift2 = b->sliidx[row / sliceheight] + (row % sliceheight); /* starting index of the row */
219d4002b98SHong Zhang               cp2    = b->colidx + shift2;
220d4002b98SHong Zhang               vp2    = b->val + shift2;
221d4002b98SHong Zhang               nrow2  = b->rlen[row];
222d4002b98SHong Zhang               low2   = 0;
223d4002b98SHong Zhang               high2  = nrow2;
2242d1451d4SHong Zhang               found  = PETSC_FALSE;
225f7d195e4SLawrence Mitchell             } else {
226f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
227f7d195e4SLawrence Mitchell             }
228d4002b98SHong Zhang           } else col = in[j];
229d4002b98SHong Zhang           MatSetValue_SeqSELL_Private(B, row, col, value, addv, im[i], in[j], cp2, vp2, lastcol2, low2, high2); /* set one value */
2302d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
2312d1451d4SHong Zhang           if (B->offloadmask != PETSC_OFFLOAD_UNALLOCATED && found) B->offloadmask = PETSC_OFFLOAD_CPU;
2322d1451d4SHong Zhang #endif
233d4002b98SHong Zhang         }
234d4002b98SHong Zhang       }
235d4002b98SHong Zhang     } else {
23628b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
237d4002b98SHong Zhang       if (!sell->donotstash) {
238d4002b98SHong Zhang         mat->assembled = PETSC_FALSE;
239d4002b98SHong Zhang         if (roworiented) {
2409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
241d4002b98SHong Zhang         } else {
2429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
243d4002b98SHong Zhang         }
244d4002b98SHong Zhang       }
245d4002b98SHong Zhang     }
246d4002b98SHong Zhang   }
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
248d4002b98SHong Zhang }
249d4002b98SHong Zhang 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISELL(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
251d71ae5a4SJacob Faibussowitsch {
252d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
253d4002b98SHong Zhang   PetscInt     i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
254d4002b98SHong Zhang   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
255d4002b98SHong Zhang 
256d4002b98SHong Zhang   PetscFunctionBegin;
257d4002b98SHong Zhang   for (i = 0; i < m; i++) {
25854c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
25954c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
260d4002b98SHong Zhang     if (idxm[i] >= rstart && idxm[i] < rend) {
261d4002b98SHong Zhang       row = idxm[i] - rstart;
262d4002b98SHong Zhang       for (j = 0; j < n; j++) {
26354c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
26454c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
265d4002b98SHong Zhang         if (idxn[j] >= cstart && idxn[j] < cend) {
266d4002b98SHong Zhang           col = idxn[j] - cstart;
2679566063dSJacob Faibussowitsch           PetscCall(MatGetValues(sell->A, 1, &row, 1, &col, v + i * n + j));
268d4002b98SHong Zhang         } else {
26948a46eb9SPierre Jolivet           if (!sell->colmap) PetscCall(MatCreateColmap_MPISELL_Private(mat));
270d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
271eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(sell->colmap, idxn[j] + 1, 0, &col));
272d4002b98SHong Zhang           col--;
273d4002b98SHong Zhang #else
274d4002b98SHong Zhang           col = sell->colmap[idxn[j]] - 1;
275d4002b98SHong Zhang #endif
276d4002b98SHong Zhang           if ((col < 0) || (sell->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
27748a46eb9SPierre Jolivet           else PetscCall(MatGetValues(sell->B, 1, &row, 1, &col, v + i * n + j));
278d4002b98SHong Zhang         }
279d4002b98SHong Zhang       }
280d4002b98SHong Zhang     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
281d4002b98SHong Zhang   }
2823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
283d4002b98SHong Zhang }
284d4002b98SHong Zhang 
285ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISELL(Mat mat, MatAssemblyType mode)
286d71ae5a4SJacob Faibussowitsch {
287d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
288d4002b98SHong Zhang   PetscInt     nstash, reallocs;
289d4002b98SHong Zhang 
290d4002b98SHong Zhang   PetscFunctionBegin;
2913ba16761SJacob Faibussowitsch   if (sell->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
292d4002b98SHong Zhang 
2939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
2949566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
2959566063dSJacob Faibussowitsch   PetscCall(PetscInfo(sell->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
2963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
297d4002b98SHong Zhang }
298d4002b98SHong Zhang 
299d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPISELL(Mat mat, MatAssemblyType mode)
300d71ae5a4SJacob Faibussowitsch {
301d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
302d4002b98SHong Zhang   PetscMPIInt  n;
303d4002b98SHong Zhang   PetscInt     i, flg;
304d4002b98SHong Zhang   PetscInt    *row, *col;
305d4002b98SHong Zhang   PetscScalar *val;
306d4002b98SHong Zhang   PetscBool    other_disassembled;
307d4002b98SHong Zhang   /* do not use 'b = (Mat_SeqSELL*)sell->B->data' as B can be reset in disassembly */
308d4002b98SHong Zhang   PetscFunctionBegin;
309d4002b98SHong Zhang   if (!sell->donotstash && !mat->nooffprocentries) {
310d4002b98SHong Zhang     while (1) {
3119566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
312d4002b98SHong Zhang       if (!flg) break;
313d4002b98SHong Zhang 
314d4002b98SHong Zhang       for (i = 0; i < n; i++) { /* assemble one by one */
3159566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPISELL(mat, 1, row + i, 1, col + i, val + i, mat->insertmode));
316d4002b98SHong Zhang       }
317d4002b98SHong Zhang     }
3189566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
319d4002b98SHong Zhang   }
3202d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
3212d1451d4SHong Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) sell->A->offloadmask = PETSC_OFFLOAD_CPU;
3222d1451d4SHong Zhang #endif
3239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(sell->A, mode));
3249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(sell->A, mode));
325d4002b98SHong Zhang 
326d4002b98SHong Zhang   /*
327d4002b98SHong Zhang      determine if any processor has disassembled, if so we must
3286aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble.
329d4002b98SHong Zhang   */
330d4002b98SHong Zhang   /*
331d4002b98SHong Zhang      if nonzero structure of submatrix B cannot change then we know that
332d4002b98SHong Zhang      no processor disassembled thus we can skip this stuff
333d4002b98SHong Zhang   */
334d4002b98SHong Zhang   if (!((Mat_SeqSELL *)sell->B->data)->nonew) {
3355f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3362d1451d4SHong Zhang     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPISELL(mat));
337d4002b98SHong Zhang   }
33848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISELL(mat));
3392d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
3402d1451d4SHong Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && sell->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) sell->B->offloadmask = PETSC_OFFLOAD_CPU;
3412d1451d4SHong Zhang #endif
3429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(sell->B, mode));
3439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(sell->B, mode));
3449566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sell->rowvalues, sell->rowindices));
345f4259b30SLisandro Dalcin   sell->rowvalues = NULL;
3469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&sell->diag));
347d4002b98SHong Zhang 
348d4002b98SHong Zhang   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
349*f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqSELL *)sell->A->data)->nonew) {
350d4002b98SHong Zhang     PetscObjectState state = sell->A->nonzerostate + sell->B->nonzerostate;
3511c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
352d4002b98SHong Zhang   }
3532d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
3542d1451d4SHong Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
3552d1451d4SHong Zhang #endif
3563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
357d4002b98SHong Zhang }
358d4002b98SHong Zhang 
359ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISELL(Mat A)
360d71ae5a4SJacob Faibussowitsch {
361d4002b98SHong Zhang   Mat_MPISELL *l = (Mat_MPISELL *)A->data;
362d4002b98SHong Zhang 
363d4002b98SHong Zhang   PetscFunctionBegin;
3649566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
3659566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
3663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
367d4002b98SHong Zhang }
368d4002b98SHong Zhang 
369ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPISELL(Mat A, Vec xx, Vec yy)
370d71ae5a4SJacob Faibussowitsch {
371d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
372d4002b98SHong Zhang   PetscInt     nt;
373d4002b98SHong Zhang 
374d4002b98SHong Zhang   PetscFunctionBegin;
3759566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
37608401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
3779566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
3789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
3799566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
3809566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
3813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
382d4002b98SHong Zhang }
383d4002b98SHong Zhang 
384fa078d78SJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPISELL(Mat A, Vec bb, Vec xx)
385d71ae5a4SJacob Faibussowitsch {
386d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
387d4002b98SHong Zhang 
388d4002b98SHong Zhang   PetscFunctionBegin;
3899566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
3903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
391d4002b98SHong Zhang }
392d4002b98SHong Zhang 
393ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz)
394d71ae5a4SJacob Faibussowitsch {
395d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
396d4002b98SHong Zhang 
397d4002b98SHong Zhang   PetscFunctionBegin;
3989566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
3999566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
4009566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
4019566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
4023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
403d4002b98SHong Zhang }
404d4002b98SHong Zhang 
405ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPISELL(Mat A, Vec xx, Vec yy)
406d71ae5a4SJacob Faibussowitsch {
407d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
408d4002b98SHong Zhang 
409d4002b98SHong Zhang   PetscFunctionBegin;
410d4002b98SHong Zhang   /* do nondiagonal part */
4119566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
412d4002b98SHong Zhang   /* do local part */
4139566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
414a29b4eb7SJunchao Zhang   /* add partial results together */
4159566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
4169566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
4173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
418d4002b98SHong Zhang }
419d4002b98SHong Zhang 
420ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPISELL(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
421d71ae5a4SJacob Faibussowitsch {
422d4002b98SHong Zhang   MPI_Comm     comm;
423d4002b98SHong Zhang   Mat_MPISELL *Asell = (Mat_MPISELL *)Amat->data, *Bsell;
424d4002b98SHong Zhang   Mat          Adia  = Asell->A, Bdia, Aoff, Boff, *Aoffs, *Boffs;
425d4002b98SHong Zhang   IS           Me, Notme;
426d4002b98SHong Zhang   PetscInt     M, N, first, last, *notme, i;
427d4002b98SHong Zhang   PetscMPIInt  size;
428d4002b98SHong Zhang 
429d4002b98SHong Zhang   PetscFunctionBegin;
430d4002b98SHong Zhang   /* Easy test: symmetric diagonal block */
4319371c9d4SSatish Balay   Bsell = (Mat_MPISELL *)Bmat->data;
4329371c9d4SSatish Balay   Bdia  = Bsell->A;
4339566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, f));
4343ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
4359566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
4369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4373ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
438d4002b98SHong Zhang 
439d4002b98SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
4409566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
4419566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
4429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
443d4002b98SHong Zhang   for (i = 0; i < first; i++) notme[i] = i;
444d4002b98SHong Zhang   for (i = last; i < M; i++) notme[i - last + first] = i;
4459566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
4469566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
4479566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
448d4002b98SHong Zhang   Aoff = Aoffs[0];
4499566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
450d4002b98SHong Zhang   Boff = Boffs[0];
4519566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
4529566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
4539566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
4549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
4559566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
4569566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
4573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
458d4002b98SHong Zhang }
459d4002b98SHong Zhang 
460ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPISELL(Mat A, Vec xx, Vec yy, Vec zz)
461d71ae5a4SJacob Faibussowitsch {
462d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
463d4002b98SHong Zhang 
464d4002b98SHong Zhang   PetscFunctionBegin;
465d4002b98SHong Zhang   /* do nondiagonal part */
4669566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
467d4002b98SHong Zhang   /* do local part */
4689566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
469e4a140f6SJunchao Zhang   /* add partial results together */
4709566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
4719566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
4723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
473d4002b98SHong Zhang }
474d4002b98SHong Zhang 
475d4002b98SHong Zhang /*
476d4002b98SHong Zhang   This only works correctly for square matrices where the subblock A->A is the
477d4002b98SHong Zhang    diagonal block
478d4002b98SHong Zhang */
479ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISELL(Mat A, Vec v)
480d71ae5a4SJacob Faibussowitsch {
481d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
482d4002b98SHong Zhang 
483d4002b98SHong Zhang   PetscFunctionBegin;
48408401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
485aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
4869566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
4873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
488d4002b98SHong Zhang }
489d4002b98SHong Zhang 
490ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPISELL(Mat A, PetscScalar aa)
491d71ae5a4SJacob Faibussowitsch {
492d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
493d4002b98SHong Zhang 
494d4002b98SHong Zhang   PetscFunctionBegin;
4959566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
4969566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
4973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
498d4002b98SHong Zhang }
499d4002b98SHong Zhang 
500d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPISELL(Mat mat)
501d71ae5a4SJacob Faibussowitsch {
502d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
503d4002b98SHong Zhang 
504d4002b98SHong Zhang   PetscFunctionBegin;
5053ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
5069566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
5079566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&sell->diag));
5089566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&sell->A));
5099566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&sell->B));
510d4002b98SHong Zhang #if defined(PETSC_USE_CTABLE)
511eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&sell->colmap));
512d4002b98SHong Zhang #else
5139566063dSJacob Faibussowitsch   PetscCall(PetscFree(sell->colmap));
514d4002b98SHong Zhang #endif
5159566063dSJacob Faibussowitsch   PetscCall(PetscFree(sell->garray));
5169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&sell->lvec));
5179566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&sell->Mvctx));
5189566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sell->rowvalues, sell->rowindices));
5199566063dSJacob Faibussowitsch   PetscCall(PetscFree(sell->ld));
5209566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
521d4002b98SHong Zhang 
5229566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
5239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
5249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
5259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
5269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISELLSetPreallocation_C", NULL));
5279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpiaij_C", NULL));
528b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA)
529b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisell_mpisellcuda_C", NULL));
530b5917f1bSHong Zhang #endif
5319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
5323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
533d4002b98SHong Zhang }
534d4002b98SHong Zhang 
535d4002b98SHong Zhang #include <petscdraw.h>
536ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
537d71ae5a4SJacob Faibussowitsch {
538d4002b98SHong Zhang   Mat_MPISELL      *sell = (Mat_MPISELL *)mat->data;
539d4002b98SHong Zhang   PetscMPIInt       rank = sell->rank, size = sell->size;
540d4002b98SHong Zhang   PetscBool         isdraw, iascii, isbinary;
541d4002b98SHong Zhang   PetscViewer       sviewer;
542d4002b98SHong Zhang   PetscViewerFormat format;
543d4002b98SHong Zhang 
544d4002b98SHong Zhang   PetscFunctionBegin;
5459566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
5469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
5479566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
548d4002b98SHong Zhang   if (iascii) {
5499566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
550d4002b98SHong Zhang     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
551d4002b98SHong Zhang       MatInfo   info;
5526335e310SSatish Balay       PetscInt *inodes;
553d4002b98SHong Zhang 
5549566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
5559566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
5569566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(sell->A, NULL, &inodes, NULL));
5579566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
558d4002b98SHong Zhang       if (!inodes) {
5599371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used,
5609371c9d4SSatish Balay                                                      (PetscInt)info.nz_allocated, (PetscInt)info.memory));
561d4002b98SHong Zhang       } else {
5629371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT ", using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used,
5639371c9d4SSatish Balay                                                      (PetscInt)info.nz_allocated, (PetscInt)info.memory));
564d4002b98SHong Zhang       }
5659566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(sell->A, MAT_LOCAL, &info));
5669566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
5679566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(sell->B, MAT_LOCAL, &info));
5689566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
5699566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
5709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
5719566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
5729566063dSJacob Faibussowitsch       PetscCall(VecScatterView(sell->Mvctx, viewer));
5733ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
574d4002b98SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_INFO) {
575d4002b98SHong Zhang       PetscInt inodecount, inodelimit, *inodes;
5769566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(sell->A, &inodecount, &inodes, &inodelimit));
577d4002b98SHong Zhang       if (inodes) {
5789566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
579d4002b98SHong Zhang       } else {
5809566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
581d4002b98SHong Zhang       }
5823ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
583d4002b98SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
5843ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
585d4002b98SHong Zhang     }
586d4002b98SHong Zhang   } else if (isbinary) {
587d4002b98SHong Zhang     if (size == 1) {
5889566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)sell->A, ((PetscObject)mat)->name));
5899566063dSJacob Faibussowitsch       PetscCall(MatView(sell->A, viewer));
590d4002b98SHong Zhang     } else {
5919566063dSJacob Faibussowitsch       /* PetscCall(MatView_MPISELL_Binary(mat,viewer)); */
592d4002b98SHong Zhang     }
5933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
594d4002b98SHong Zhang   } else if (isdraw) {
595d4002b98SHong Zhang     PetscDraw draw;
596d4002b98SHong Zhang     PetscBool isnull;
5979566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
5989566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
5993ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
600d4002b98SHong Zhang   }
601d4002b98SHong Zhang 
602d4002b98SHong Zhang   {
603d4002b98SHong Zhang     /* assemble the entire matrix onto first processor. */
604d4002b98SHong Zhang     Mat          A;
605d4002b98SHong Zhang     Mat_SeqSELL *Aloc;
606d4002b98SHong Zhang     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *acolidx, row, col, i, j;
607d4002b98SHong Zhang     MatScalar   *aval;
608d4002b98SHong Zhang     PetscBool    isnonzero;
609d4002b98SHong Zhang 
6109566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
611dd400576SPatrick Sanan     if (rank == 0) {
6129566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
613d4002b98SHong Zhang     } else {
6149566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
615d4002b98SHong Zhang     }
616d4002b98SHong Zhang     /* This is just a temporary matrix, so explicitly using MATMPISELL is probably best */
6179566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPISELL));
6189566063dSJacob Faibussowitsch     PetscCall(MatMPISELLSetPreallocation(A, 0, NULL, 0, NULL));
6199566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
620d4002b98SHong Zhang 
621d4002b98SHong Zhang     /* copy over the A part */
622d4002b98SHong Zhang     Aloc    = (Mat_SeqSELL *)sell->A->data;
6239371c9d4SSatish Balay     acolidx = Aloc->colidx;
6249371c9d4SSatish Balay     aval    = Aloc->val;
625d4002b98SHong Zhang     for (i = 0; i < Aloc->totalslices; i++) { /* loop over slices */
626d4002b98SHong Zhang       for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) {
62707e43b41SHong Zhang         isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]);
628d4002b98SHong Zhang         if (isnonzero) { /* check the mask bit */
62907e43b41SHong Zhang           row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart;
630d4002b98SHong Zhang           col = *acolidx + mat->rmap->rstart;
6319566063dSJacob Faibussowitsch           PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES));
632d4002b98SHong Zhang         }
6339371c9d4SSatish Balay         aval++;
6349371c9d4SSatish Balay         acolidx++;
635d4002b98SHong Zhang       }
636d4002b98SHong Zhang     }
637d4002b98SHong Zhang 
638d4002b98SHong Zhang     /* copy over the B part */
639d4002b98SHong Zhang     Aloc    = (Mat_SeqSELL *)sell->B->data;
6409371c9d4SSatish Balay     acolidx = Aloc->colidx;
6419371c9d4SSatish Balay     aval    = Aloc->val;
642d4002b98SHong Zhang     for (i = 0; i < Aloc->totalslices; i++) {
643d4002b98SHong Zhang       for (j = Aloc->sliidx[i]; j < Aloc->sliidx[i + 1]; j++) {
64407e43b41SHong Zhang         isnonzero = (PetscBool)((j - Aloc->sliidx[i]) / Aloc->sliceheight < Aloc->rlen[i * Aloc->sliceheight + j % Aloc->sliceheight]);
645d4002b98SHong Zhang         if (isnonzero) {
64607e43b41SHong Zhang           row = i * Aloc->sliceheight + j % Aloc->sliceheight + mat->rmap->rstart;
647d4002b98SHong Zhang           col = sell->garray[*acolidx];
6489566063dSJacob Faibussowitsch           PetscCall(MatSetValues(A, 1, &row, 1, &col, aval, INSERT_VALUES));
649d4002b98SHong Zhang         }
6509371c9d4SSatish Balay         aval++;
6519371c9d4SSatish Balay         acolidx++;
652d4002b98SHong Zhang       }
653d4002b98SHong Zhang     }
654d4002b98SHong Zhang 
6559566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
6569566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
657d4002b98SHong Zhang     /*
658d4002b98SHong Zhang        Everyone has to call to draw the matrix since the graphics waits are
659d4002b98SHong Zhang        synchronized across all processors that share the PetscDraw object
660d4002b98SHong Zhang     */
6619566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
662dd400576SPatrick Sanan     if (rank == 0) {
663*f4f49eeaSPierre Jolivet       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISELL *)A->data)->A, ((PetscObject)mat)->name));
664*f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqSELL(((Mat_MPISELL *)A->data)->A, sviewer));
665d4002b98SHong Zhang     }
6669566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
6679566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
668d4002b98SHong Zhang   }
6693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
670d4002b98SHong Zhang }
671d4002b98SHong Zhang 
672ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPISELL(Mat mat, PetscViewer viewer)
673d71ae5a4SJacob Faibussowitsch {
674d4002b98SHong Zhang   PetscBool iascii, isdraw, issocket, isbinary;
675d4002b98SHong Zhang 
676d4002b98SHong Zhang   PetscFunctionBegin;
6779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
6789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
6799566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
6809566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
68148a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPISELL_ASCIIorDraworSocket(mat, viewer));
6823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
683d4002b98SHong Zhang }
684d4002b98SHong Zhang 
685ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPISELL(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
686d71ae5a4SJacob Faibussowitsch {
687d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
688d4002b98SHong Zhang 
689d4002b98SHong Zhang   PetscFunctionBegin;
6909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(sell->B, NULL, nghosts));
691d4002b98SHong Zhang   if (ghosts) *ghosts = sell->garray;
6923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
693d4002b98SHong Zhang }
694d4002b98SHong Zhang 
695ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISELL(Mat matin, MatInfoType flag, MatInfo *info)
696d71ae5a4SJacob Faibussowitsch {
697d4002b98SHong Zhang   Mat_MPISELL   *mat = (Mat_MPISELL *)matin->data;
698d4002b98SHong Zhang   Mat            A = mat->A, B = mat->B;
6993966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
700d4002b98SHong Zhang 
701d4002b98SHong Zhang   PetscFunctionBegin;
702d4002b98SHong Zhang   info->block_size = 1.0;
7039566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
704d4002b98SHong Zhang 
7059371c9d4SSatish Balay   isend[0] = info->nz_used;
7069371c9d4SSatish Balay   isend[1] = info->nz_allocated;
7079371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
7089371c9d4SSatish Balay   isend[3] = info->memory;
7099371c9d4SSatish Balay   isend[4] = info->mallocs;
710d4002b98SHong Zhang 
7119566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
712d4002b98SHong Zhang 
7139371c9d4SSatish Balay   isend[0] += info->nz_used;
7149371c9d4SSatish Balay   isend[1] += info->nz_allocated;
7159371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
7169371c9d4SSatish Balay   isend[3] += info->memory;
7179371c9d4SSatish Balay   isend[4] += info->mallocs;
718d4002b98SHong Zhang   if (flag == MAT_LOCAL) {
719d4002b98SHong Zhang     info->nz_used      = isend[0];
720d4002b98SHong Zhang     info->nz_allocated = isend[1];
721d4002b98SHong Zhang     info->nz_unneeded  = isend[2];
722d4002b98SHong Zhang     info->memory       = isend[3];
723d4002b98SHong Zhang     info->mallocs      = isend[4];
724d4002b98SHong Zhang   } else if (flag == MAT_GLOBAL_MAX) {
7251c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
726d4002b98SHong Zhang 
727d4002b98SHong Zhang     info->nz_used      = irecv[0];
728d4002b98SHong Zhang     info->nz_allocated = irecv[1];
729d4002b98SHong Zhang     info->nz_unneeded  = irecv[2];
730d4002b98SHong Zhang     info->memory       = irecv[3];
731d4002b98SHong Zhang     info->mallocs      = irecv[4];
732d4002b98SHong Zhang   } else if (flag == MAT_GLOBAL_SUM) {
7331c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
734d4002b98SHong Zhang 
735d4002b98SHong Zhang     info->nz_used      = irecv[0];
736d4002b98SHong Zhang     info->nz_allocated = irecv[1];
737d4002b98SHong Zhang     info->nz_unneeded  = irecv[2];
738d4002b98SHong Zhang     info->memory       = irecv[3];
739d4002b98SHong Zhang     info->mallocs      = irecv[4];
740d4002b98SHong Zhang   }
741d4002b98SHong Zhang   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
742d4002b98SHong Zhang   info->fill_ratio_needed = 0;
743d4002b98SHong Zhang   info->factor_mallocs    = 0;
7443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
745d4002b98SHong Zhang }
746d4002b98SHong Zhang 
74743b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISELL(Mat A, MatOption op, PetscBool flg)
748d71ae5a4SJacob Faibussowitsch {
749d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
750d4002b98SHong Zhang 
751d4002b98SHong Zhang   PetscFunctionBegin;
752d4002b98SHong Zhang   switch (op) {
753d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
754d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
755d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
756d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
757d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
758d4002b98SHong Zhang   case MAT_USE_INODES:
759d4002b98SHong Zhang   case MAT_IGNORE_ZERO_ENTRIES:
760d4002b98SHong Zhang     MatCheckPreallocated(A, 1);
7619566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
7629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
763d4002b98SHong Zhang     break;
764d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
765d4002b98SHong Zhang     MatCheckPreallocated(A, 1);
766d4002b98SHong Zhang     a->roworiented = flg;
767d4002b98SHong Zhang 
7689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
7699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
770d4002b98SHong Zhang     break;
7718c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
772d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
773d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
774d71ae5a4SJacob Faibussowitsch     break;
775d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
776d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
777d71ae5a4SJacob Faibussowitsch     break;
778d4002b98SHong Zhang   case MAT_SPD:
779d71ae5a4SJacob Faibussowitsch   case MAT_SPD_ETERNAL:
780d71ae5a4SJacob Faibussowitsch     break;
781d4002b98SHong Zhang   case MAT_SYMMETRIC:
782d4002b98SHong Zhang     MatCheckPreallocated(A, 1);
7839566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
784d4002b98SHong Zhang     break;
785d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
786d4002b98SHong Zhang     MatCheckPreallocated(A, 1);
7879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
788d4002b98SHong Zhang     break;
789d4002b98SHong Zhang   case MAT_HERMITIAN:
790d4002b98SHong Zhang     MatCheckPreallocated(A, 1);
7919566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
792d4002b98SHong Zhang     break;
793d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
794d4002b98SHong Zhang     MatCheckPreallocated(A, 1);
7959566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
796d4002b98SHong Zhang     break;
797b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
798b94d7dedSBarry Smith     MatCheckPreallocated(A, 1);
799b94d7dedSBarry Smith     PetscCall(MatSetOption(a->A, op, flg));
800b94d7dedSBarry Smith     break;
801d71ae5a4SJacob Faibussowitsch   default:
802d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
803d4002b98SHong Zhang   }
8043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
805d4002b98SHong Zhang }
806d4002b98SHong Zhang 
807ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISELL(Mat mat, Vec ll, Vec rr)
808d71ae5a4SJacob Faibussowitsch {
809d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
810d4002b98SHong Zhang   Mat          a = sell->A, b = sell->B;
811d4002b98SHong Zhang   PetscInt     s1, s2, s3;
812d4002b98SHong Zhang 
813d4002b98SHong Zhang   PetscFunctionBegin;
8149566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
815d4002b98SHong Zhang   if (rr) {
8169566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
81708401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
818d4002b98SHong Zhang     /* Overlap communication with computation. */
8199566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD));
820d4002b98SHong Zhang   }
821d4002b98SHong Zhang   if (ll) {
8229566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
82308401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
824dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
825d4002b98SHong Zhang   }
826d4002b98SHong Zhang   /* scale  the diagonal block */
827dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
828d4002b98SHong Zhang 
829d4002b98SHong Zhang   if (rr) {
830d4002b98SHong Zhang     /* Do a scatter end and then right scale the off-diagonal block */
8319566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(sell->Mvctx, rr, sell->lvec, INSERT_VALUES, SCATTER_FORWARD));
832dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, sell->lvec);
833d4002b98SHong Zhang   }
8343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
835d4002b98SHong Zhang }
836d4002b98SHong Zhang 
837ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISELL(Mat A)
838d71ae5a4SJacob Faibussowitsch {
839d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
840d4002b98SHong Zhang 
841d4002b98SHong Zhang   PetscFunctionBegin;
8429566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
8433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
844d4002b98SHong Zhang }
845d4002b98SHong Zhang 
846ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISELL(Mat A, Mat B, PetscBool *flag)
847d71ae5a4SJacob Faibussowitsch {
848d4002b98SHong Zhang   Mat_MPISELL *matB = (Mat_MPISELL *)B->data, *matA = (Mat_MPISELL *)A->data;
849d4002b98SHong Zhang   Mat          a, b, c, d;
850d4002b98SHong Zhang   PetscBool    flg;
851d4002b98SHong Zhang 
852d4002b98SHong Zhang   PetscFunctionBegin;
8539371c9d4SSatish Balay   a = matA->A;
8549371c9d4SSatish Balay   b = matA->B;
8559371c9d4SSatish Balay   c = matB->A;
8569371c9d4SSatish Balay   d = matB->B;
857d4002b98SHong Zhang 
8589566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
85948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
8601c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
8613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
862d4002b98SHong Zhang }
863d4002b98SHong Zhang 
864ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISELL(Mat A, Mat B, MatStructure str)
865d71ae5a4SJacob Faibussowitsch {
866d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
867d4002b98SHong Zhang   Mat_MPISELL *b = (Mat_MPISELL *)B->data;
868d4002b98SHong Zhang 
869d4002b98SHong Zhang   PetscFunctionBegin;
870d4002b98SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
871d4002b98SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
872d4002b98SHong Zhang     /* because of the column compression in the off-processor part of the matrix a->B,
873d4002b98SHong Zhang        the number of columns in a->B and b->B may be different, hence we cannot call
874d4002b98SHong Zhang        the MatCopy() directly on the two parts. If need be, we can provide a more
875d4002b98SHong Zhang        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
876d4002b98SHong Zhang        then copying the submatrices */
8779566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
878d4002b98SHong Zhang   } else {
8799566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
8809566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
881d4002b98SHong Zhang   }
8823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
883d4002b98SHong Zhang }
884d4002b98SHong Zhang 
885ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPISELL(Mat A)
886d71ae5a4SJacob Faibussowitsch {
887d4002b98SHong Zhang   PetscFunctionBegin;
8889566063dSJacob Faibussowitsch   PetscCall(MatMPISELLSetPreallocation(A, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL));
8893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
890d4002b98SHong Zhang }
891d4002b98SHong Zhang 
892ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISELL(Mat mat)
893d71ae5a4SJacob Faibussowitsch {
8945f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
8955f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
896d4002b98SHong Zhang     Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
897d4002b98SHong Zhang 
8989566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqSELL(sell->A));
8999566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqSELL(sell->B));
9005f80ce2aSJacob Faibussowitsch   }
9013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
902d4002b98SHong Zhang }
903d4002b98SHong Zhang 
904ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISELL(Mat A)
905d71ae5a4SJacob Faibussowitsch {
906d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
907d4002b98SHong Zhang 
908d4002b98SHong Zhang   PetscFunctionBegin;
9099566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
9109566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
912d4002b98SHong Zhang }
913d4002b98SHong Zhang 
914ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISELL(Mat A)
915d71ae5a4SJacob Faibussowitsch {
916d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
917d4002b98SHong Zhang 
918d4002b98SHong Zhang   PetscFunctionBegin;
9199566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
9209566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
9213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
922d4002b98SHong Zhang }
923d4002b98SHong Zhang 
924ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPISELL(Mat A, const PetscScalar **values)
925d71ae5a4SJacob Faibussowitsch {
926d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
927d4002b98SHong Zhang 
928d4002b98SHong Zhang   PetscFunctionBegin;
9299566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
930d4002b98SHong Zhang   A->factorerrortype = a->A->factorerrortype;
9313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
932d4002b98SHong Zhang }
933d4002b98SHong Zhang 
934d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPISELL(Mat x, PetscRandom rctx)
935d71ae5a4SJacob Faibussowitsch {
936d4002b98SHong Zhang   Mat_MPISELL *sell = (Mat_MPISELL *)x->data;
937d4002b98SHong Zhang 
938d4002b98SHong Zhang   PetscFunctionBegin;
9399566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(sell->A, rctx));
9409566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(sell->B, rctx));
9419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
9429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
9433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
944d4002b98SHong Zhang }
945d4002b98SHong Zhang 
94643b34f9dSJacob Faibussowitsch static PetscErrorCode MatSetFromOptions_MPISELL(Mat A, PetscOptionItems *PetscOptionsObject)
947d71ae5a4SJacob Faibussowitsch {
948d4002b98SHong Zhang   PetscFunctionBegin;
949d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPISELL options");
950d0609cedSBarry Smith   PetscOptionsHeadEnd();
9513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
952d4002b98SHong Zhang }
953d4002b98SHong Zhang 
954ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPISELL(Mat Y, PetscScalar a)
955d71ae5a4SJacob Faibussowitsch {
956d4002b98SHong Zhang   Mat_MPISELL *msell = (Mat_MPISELL *)Y->data;
957d4002b98SHong Zhang   Mat_SeqSELL *sell  = (Mat_SeqSELL *)msell->A->data;
958d4002b98SHong Zhang 
959d4002b98SHong Zhang   PetscFunctionBegin;
960d4002b98SHong Zhang   if (!Y->preallocated) {
9619566063dSJacob Faibussowitsch     PetscCall(MatMPISELLSetPreallocation(Y, 1, NULL, 0, NULL));
962d4002b98SHong Zhang   } else if (!sell->nz) {
963d4002b98SHong Zhang     PetscInt nonew = sell->nonew;
9649566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(msell->A, 1, NULL));
965d4002b98SHong Zhang     sell->nonew = nonew;
966d4002b98SHong Zhang   }
9679566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
9683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
969d4002b98SHong Zhang }
970d4002b98SHong Zhang 
971ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPISELL(Mat A, PetscBool *missing, PetscInt *d)
972d71ae5a4SJacob Faibussowitsch {
973d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
974d4002b98SHong Zhang 
975d4002b98SHong Zhang   PetscFunctionBegin;
97608401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
9779566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
978d4002b98SHong Zhang   if (d) {
979d4002b98SHong Zhang     PetscInt rstart;
9809566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
981d4002b98SHong Zhang     *d += rstart;
982d4002b98SHong Zhang   }
9833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
984d4002b98SHong Zhang }
985d4002b98SHong Zhang 
986ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISELL(Mat A, Mat *a)
987d71ae5a4SJacob Faibussowitsch {
988d4002b98SHong Zhang   PetscFunctionBegin;
989d4002b98SHong Zhang   *a = ((Mat_MPISELL *)A->data)->A;
9903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
991d4002b98SHong Zhang }
992d4002b98SHong Zhang 
99343b34f9dSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISELL(Mat mat)
99443b34f9dSJacob Faibussowitsch {
99543b34f9dSJacob Faibussowitsch   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
99643b34f9dSJacob Faibussowitsch 
99743b34f9dSJacob Faibussowitsch   PetscFunctionBegin;
99843b34f9dSJacob Faibussowitsch   PetscCall(MatStoreValues(sell->A));
99943b34f9dSJacob Faibussowitsch   PetscCall(MatStoreValues(sell->B));
100043b34f9dSJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
100143b34f9dSJacob Faibussowitsch }
100243b34f9dSJacob Faibussowitsch 
100343b34f9dSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISELL(Mat mat)
100443b34f9dSJacob Faibussowitsch {
100543b34f9dSJacob Faibussowitsch   Mat_MPISELL *sell = (Mat_MPISELL *)mat->data;
100643b34f9dSJacob Faibussowitsch 
100743b34f9dSJacob Faibussowitsch   PetscFunctionBegin;
100843b34f9dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(sell->A));
100943b34f9dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(sell->B));
101043b34f9dSJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
101143b34f9dSJacob Faibussowitsch }
101243b34f9dSJacob Faibussowitsch 
101343b34f9dSJacob Faibussowitsch static PetscErrorCode MatMPISELLSetPreallocation_MPISELL(Mat B, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[])
101443b34f9dSJacob Faibussowitsch {
101543b34f9dSJacob Faibussowitsch   Mat_MPISELL *b;
101643b34f9dSJacob Faibussowitsch 
101743b34f9dSJacob Faibussowitsch   PetscFunctionBegin;
101843b34f9dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
101943b34f9dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
102043b34f9dSJacob Faibussowitsch   b = (Mat_MPISELL *)B->data;
102143b34f9dSJacob Faibussowitsch 
102243b34f9dSJacob Faibussowitsch   if (!B->preallocated) {
102343b34f9dSJacob Faibussowitsch     /* Explicitly create 2 MATSEQSELL matrices. */
102443b34f9dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
102543b34f9dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
102643b34f9dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
102743b34f9dSJacob Faibussowitsch     PetscCall(MatSetType(b->A, MATSEQSELL));
102843b34f9dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
102943b34f9dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->B, B->rmap->n, B->cmap->N, B->rmap->n, B->cmap->N));
103043b34f9dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
103143b34f9dSJacob Faibussowitsch     PetscCall(MatSetType(b->B, MATSEQSELL));
103243b34f9dSJacob Faibussowitsch   }
103343b34f9dSJacob Faibussowitsch 
103443b34f9dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(b->A, d_rlenmax, d_rlen));
103543b34f9dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(b->B, o_rlenmax, o_rlen));
103643b34f9dSJacob Faibussowitsch   B->preallocated  = PETSC_TRUE;
103743b34f9dSJacob Faibussowitsch   B->was_assembled = PETSC_FALSE;
103843b34f9dSJacob Faibussowitsch   /*
103943b34f9dSJacob Faibussowitsch     critical for MatAssemblyEnd to work.
104043b34f9dSJacob Faibussowitsch     MatAssemblyBegin checks it to set up was_assembled
104143b34f9dSJacob Faibussowitsch     and MatAssemblyEnd checks was_assembled to determine whether to build garray
104243b34f9dSJacob Faibussowitsch   */
104343b34f9dSJacob Faibussowitsch   B->assembled = PETSC_FALSE;
104443b34f9dSJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104543b34f9dSJacob Faibussowitsch }
104643b34f9dSJacob Faibussowitsch 
104743b34f9dSJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISELL(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
104843b34f9dSJacob Faibussowitsch {
104943b34f9dSJacob Faibussowitsch   Mat          mat;
105043b34f9dSJacob Faibussowitsch   Mat_MPISELL *a, *oldmat = (Mat_MPISELL *)matin->data;
105143b34f9dSJacob Faibussowitsch 
105243b34f9dSJacob Faibussowitsch   PetscFunctionBegin;
105343b34f9dSJacob Faibussowitsch   *newmat = NULL;
105443b34f9dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
105543b34f9dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
105643b34f9dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
105743b34f9dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
105843b34f9dSJacob Faibussowitsch   a = (Mat_MPISELL *)mat->data;
105943b34f9dSJacob Faibussowitsch 
106043b34f9dSJacob Faibussowitsch   mat->factortype   = matin->factortype;
106143b34f9dSJacob Faibussowitsch   mat->assembled    = PETSC_TRUE;
106243b34f9dSJacob Faibussowitsch   mat->insertmode   = NOT_SET_VALUES;
106343b34f9dSJacob Faibussowitsch   mat->preallocated = PETSC_TRUE;
106443b34f9dSJacob Faibussowitsch 
106543b34f9dSJacob Faibussowitsch   a->size         = oldmat->size;
106643b34f9dSJacob Faibussowitsch   a->rank         = oldmat->rank;
106743b34f9dSJacob Faibussowitsch   a->donotstash   = oldmat->donotstash;
106843b34f9dSJacob Faibussowitsch   a->roworiented  = oldmat->roworiented;
106943b34f9dSJacob Faibussowitsch   a->rowindices   = NULL;
107043b34f9dSJacob Faibussowitsch   a->rowvalues    = NULL;
107143b34f9dSJacob Faibussowitsch   a->getrowactive = PETSC_FALSE;
107243b34f9dSJacob Faibussowitsch 
107343b34f9dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
107443b34f9dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
107543b34f9dSJacob Faibussowitsch 
107643b34f9dSJacob Faibussowitsch   if (oldmat->colmap) {
107743b34f9dSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
107843b34f9dSJacob Faibussowitsch     PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
107943b34f9dSJacob Faibussowitsch #else
108043b34f9dSJacob Faibussowitsch     PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
108143b34f9dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
108243b34f9dSJacob Faibussowitsch #endif
108343b34f9dSJacob Faibussowitsch   } else a->colmap = NULL;
108443b34f9dSJacob Faibussowitsch   if (oldmat->garray) {
108543b34f9dSJacob Faibussowitsch     PetscInt len;
108643b34f9dSJacob Faibussowitsch     len = oldmat->B->cmap->n;
108743b34f9dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &a->garray));
108843b34f9dSJacob Faibussowitsch     if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
108943b34f9dSJacob Faibussowitsch   } else a->garray = NULL;
109043b34f9dSJacob Faibussowitsch 
109143b34f9dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
109243b34f9dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
109343b34f9dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
109443b34f9dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
109543b34f9dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
109643b34f9dSJacob Faibussowitsch   *newmat = mat;
109743b34f9dSJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
109843b34f9dSJacob Faibussowitsch }
109943b34f9dSJacob Faibussowitsch 
110043b34f9dSJacob Faibussowitsch static const struct _MatOps MatOps_Values = {MatSetValues_MPISELL,
1101f4259b30SLisandro Dalcin                                              NULL,
1102f4259b30SLisandro Dalcin                                              NULL,
1103d4002b98SHong Zhang                                              MatMult_MPISELL,
1104d4002b98SHong Zhang                                              /* 4*/ MatMultAdd_MPISELL,
1105d4002b98SHong Zhang                                              MatMultTranspose_MPISELL,
1106d4002b98SHong Zhang                                              MatMultTransposeAdd_MPISELL,
1107f4259b30SLisandro Dalcin                                              NULL,
1108f4259b30SLisandro Dalcin                                              NULL,
1109f4259b30SLisandro Dalcin                                              NULL,
1110f4259b30SLisandro Dalcin                                              /*10*/ NULL,
1111f4259b30SLisandro Dalcin                                              NULL,
1112f4259b30SLisandro Dalcin                                              NULL,
1113d4002b98SHong Zhang                                              MatSOR_MPISELL,
1114f4259b30SLisandro Dalcin                                              NULL,
1115d4002b98SHong Zhang                                              /*15*/ MatGetInfo_MPISELL,
1116d4002b98SHong Zhang                                              MatEqual_MPISELL,
1117d4002b98SHong Zhang                                              MatGetDiagonal_MPISELL,
1118d4002b98SHong Zhang                                              MatDiagonalScale_MPISELL,
1119f4259b30SLisandro Dalcin                                              NULL,
1120d4002b98SHong Zhang                                              /*20*/ MatAssemblyBegin_MPISELL,
1121d4002b98SHong Zhang                                              MatAssemblyEnd_MPISELL,
1122d4002b98SHong Zhang                                              MatSetOption_MPISELL,
1123d4002b98SHong Zhang                                              MatZeroEntries_MPISELL,
1124f4259b30SLisandro Dalcin                                              /*24*/ NULL,
1125f4259b30SLisandro Dalcin                                              NULL,
1126f4259b30SLisandro Dalcin                                              NULL,
1127f4259b30SLisandro Dalcin                                              NULL,
1128f4259b30SLisandro Dalcin                                              NULL,
1129d4002b98SHong Zhang                                              /*29*/ MatSetUp_MPISELL,
1130f4259b30SLisandro Dalcin                                              NULL,
1131f4259b30SLisandro Dalcin                                              NULL,
1132d4002b98SHong Zhang                                              MatGetDiagonalBlock_MPISELL,
1133f4259b30SLisandro Dalcin                                              NULL,
1134d4002b98SHong Zhang                                              /*34*/ MatDuplicate_MPISELL,
1135f4259b30SLisandro Dalcin                                              NULL,
1136f4259b30SLisandro Dalcin                                              NULL,
1137f4259b30SLisandro Dalcin                                              NULL,
1138f4259b30SLisandro Dalcin                                              NULL,
1139f4259b30SLisandro Dalcin                                              /*39*/ NULL,
1140f4259b30SLisandro Dalcin                                              NULL,
1141f4259b30SLisandro Dalcin                                              NULL,
1142d4002b98SHong Zhang                                              MatGetValues_MPISELL,
1143d4002b98SHong Zhang                                              MatCopy_MPISELL,
1144f4259b30SLisandro Dalcin                                              /*44*/ NULL,
1145d4002b98SHong Zhang                                              MatScale_MPISELL,
1146d4002b98SHong Zhang                                              MatShift_MPISELL,
1147d4002b98SHong Zhang                                              MatDiagonalSet_MPISELL,
1148f4259b30SLisandro Dalcin                                              NULL,
1149d4002b98SHong Zhang                                              /*49*/ MatSetRandom_MPISELL,
1150f4259b30SLisandro Dalcin                                              NULL,
1151f4259b30SLisandro Dalcin                                              NULL,
1152f4259b30SLisandro Dalcin                                              NULL,
1153f4259b30SLisandro Dalcin                                              NULL,
1154d4002b98SHong Zhang                                              /*54*/ MatFDColoringCreate_MPIXAIJ,
1155f4259b30SLisandro Dalcin                                              NULL,
1156d4002b98SHong Zhang                                              MatSetUnfactored_MPISELL,
1157f4259b30SLisandro Dalcin                                              NULL,
1158f4259b30SLisandro Dalcin                                              NULL,
1159f4259b30SLisandro Dalcin                                              /*59*/ NULL,
1160d4002b98SHong Zhang                                              MatDestroy_MPISELL,
1161d4002b98SHong Zhang                                              MatView_MPISELL,
1162f4259b30SLisandro Dalcin                                              NULL,
1163f4259b30SLisandro Dalcin                                              NULL,
1164f4259b30SLisandro Dalcin                                              /*64*/ NULL,
1165f4259b30SLisandro Dalcin                                              NULL,
1166f4259b30SLisandro Dalcin                                              NULL,
1167f4259b30SLisandro Dalcin                                              NULL,
1168f4259b30SLisandro Dalcin                                              NULL,
1169f4259b30SLisandro Dalcin                                              /*69*/ NULL,
1170f4259b30SLisandro Dalcin                                              NULL,
1171f4259b30SLisandro Dalcin                                              NULL,
1172f4259b30SLisandro Dalcin                                              NULL,
1173f4259b30SLisandro Dalcin                                              NULL,
1174f4259b30SLisandro Dalcin                                              NULL,
1175d4002b98SHong Zhang                                              /*75*/ MatFDColoringApply_AIJ, /* reuse AIJ function */
1176d4002b98SHong Zhang                                              MatSetFromOptions_MPISELL,
1177f4259b30SLisandro Dalcin                                              NULL,
1178f4259b30SLisandro Dalcin                                              NULL,
1179f4259b30SLisandro Dalcin                                              NULL,
1180f4259b30SLisandro Dalcin                                              /*80*/ NULL,
1181f4259b30SLisandro Dalcin                                              NULL,
1182f4259b30SLisandro Dalcin                                              NULL,
1183f4259b30SLisandro Dalcin                                              /*83*/ NULL,
1184f4259b30SLisandro Dalcin                                              NULL,
1185f4259b30SLisandro Dalcin                                              NULL,
1186f4259b30SLisandro Dalcin                                              NULL,
1187f4259b30SLisandro Dalcin                                              NULL,
1188f4259b30SLisandro Dalcin                                              NULL,
1189f4259b30SLisandro Dalcin                                              /*89*/ NULL,
1190f4259b30SLisandro Dalcin                                              NULL,
1191f4259b30SLisandro Dalcin                                              NULL,
1192f4259b30SLisandro Dalcin                                              NULL,
1193f4259b30SLisandro Dalcin                                              NULL,
1194f4259b30SLisandro Dalcin                                              /*94*/ NULL,
1195f4259b30SLisandro Dalcin                                              NULL,
1196f4259b30SLisandro Dalcin                                              NULL,
1197f4259b30SLisandro Dalcin                                              NULL,
1198f4259b30SLisandro Dalcin                                              NULL,
1199f4259b30SLisandro Dalcin                                              /*99*/ NULL,
1200f4259b30SLisandro Dalcin                                              NULL,
1201f4259b30SLisandro Dalcin                                              NULL,
1202d4002b98SHong Zhang                                              MatConjugate_MPISELL,
1203f4259b30SLisandro Dalcin                                              NULL,
1204f4259b30SLisandro Dalcin                                              /*104*/ NULL,
1205d4002b98SHong Zhang                                              MatRealPart_MPISELL,
1206d4002b98SHong Zhang                                              MatImaginaryPart_MPISELL,
1207f4259b30SLisandro Dalcin                                              NULL,
1208f4259b30SLisandro Dalcin                                              NULL,
1209f4259b30SLisandro Dalcin                                              /*109*/ NULL,
1210f4259b30SLisandro Dalcin                                              NULL,
1211f4259b30SLisandro Dalcin                                              NULL,
1212f4259b30SLisandro Dalcin                                              NULL,
1213d4002b98SHong Zhang                                              MatMissingDiagonal_MPISELL,
1214f4259b30SLisandro Dalcin                                              /*114*/ NULL,
1215f4259b30SLisandro Dalcin                                              NULL,
1216d4002b98SHong Zhang                                              MatGetGhosts_MPISELL,
1217f4259b30SLisandro Dalcin                                              NULL,
1218f4259b30SLisandro Dalcin                                              NULL,
121943b34f9dSJacob Faibussowitsch                                              /*119*/ MatMultDiagonalBlock_MPISELL,
1220f4259b30SLisandro Dalcin                                              NULL,
1221f4259b30SLisandro Dalcin                                              NULL,
1222f4259b30SLisandro Dalcin                                              NULL,
1223f4259b30SLisandro Dalcin                                              NULL,
1224f4259b30SLisandro Dalcin                                              /*124*/ NULL,
1225f4259b30SLisandro Dalcin                                              NULL,
1226d4002b98SHong Zhang                                              MatInvertBlockDiagonal_MPISELL,
1227f4259b30SLisandro Dalcin                                              NULL,
1228f4259b30SLisandro Dalcin                                              NULL,
1229f4259b30SLisandro Dalcin                                              /*129*/ NULL,
1230f4259b30SLisandro Dalcin                                              NULL,
1231f4259b30SLisandro Dalcin                                              NULL,
1232f4259b30SLisandro Dalcin                                              NULL,
1233f4259b30SLisandro Dalcin                                              NULL,
1234f4259b30SLisandro Dalcin                                              /*134*/ NULL,
1235f4259b30SLisandro Dalcin                                              NULL,
1236f4259b30SLisandro Dalcin                                              NULL,
1237f4259b30SLisandro Dalcin                                              NULL,
1238f4259b30SLisandro Dalcin                                              NULL,
1239f4259b30SLisandro Dalcin                                              /*139*/ NULL,
1240f4259b30SLisandro Dalcin                                              NULL,
1241f4259b30SLisandro Dalcin                                              NULL,
1242d4002b98SHong Zhang                                              MatFDColoringSetUp_MPIXAIJ,
1243f4259b30SLisandro Dalcin                                              NULL,
1244d70f29a3SPierre Jolivet                                              /*144*/ NULL,
1245d70f29a3SPierre Jolivet                                              NULL,
1246d70f29a3SPierre Jolivet                                              NULL,
124799a7f59eSMark Adams                                              NULL,
124899a7f59eSMark Adams                                              NULL,
12497fb60732SBarry Smith                                              NULL,
1250dec0b466SHong Zhang                                              /*150*/ NULL,
1251eede4a3fSMark Adams                                              NULL,
1252dec0b466SHong Zhang                                              NULL};
1253d4002b98SHong Zhang 
1254d4002b98SHong Zhang /*@C
125511a5261eSBarry Smith   MatMPISELLSetPreallocation - Preallocates memory for a `MATMPISELL` sparse parallel matrix in sell format.
1256d4002b98SHong Zhang   For good matrix assembly performance the user should preallocate the matrix storage by
125767be906fSBarry Smith   setting the parameters `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
1258d4002b98SHong Zhang 
1259d083f849SBarry Smith   Collective
1260d4002b98SHong Zhang 
1261d4002b98SHong Zhang   Input Parameters:
1262d4002b98SHong Zhang + B     - the matrix
1263d4002b98SHong Zhang . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
1264d4002b98SHong Zhang            (same value is used for all local rows)
1265d4002b98SHong Zhang . d_nnz - array containing the number of nonzeros in the various rows of the
1266d4002b98SHong Zhang            DIAGONAL portion of the local submatrix (possibly different for each row)
126767be906fSBarry Smith            or NULL (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
1268d4002b98SHong Zhang            The size of this array is equal to the number of local rows, i.e 'm'.
1269d4002b98SHong Zhang            For matrices that will be factored, you must leave room for (and set)
1270d4002b98SHong Zhang            the diagonal entry even if it is zero.
1271d4002b98SHong Zhang . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
1272d4002b98SHong Zhang            submatrix (same value is used for all local rows).
1273d4002b98SHong Zhang - o_nnz - array containing the number of nonzeros in the various rows of the
1274d4002b98SHong Zhang            OFF-DIAGONAL portion of the local submatrix (possibly different for
127567be906fSBarry Smith            each row) or NULL (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
1276d4002b98SHong Zhang            structure. The size of this array is equal to the number
1277d4002b98SHong Zhang            of local rows, i.e 'm'.
1278d4002b98SHong Zhang 
1279d4002b98SHong Zhang   Example usage:
1280d4002b98SHong Zhang   Consider the following 8x8 matrix with 34 non-zero values, that is
1281d4002b98SHong Zhang   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
1282d4002b98SHong Zhang   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
128367be906fSBarry Smith   as follows
1284d4002b98SHong Zhang 
1285d4002b98SHong Zhang .vb
1286d4002b98SHong Zhang             1  2  0  |  0  3  0  |  0  4
1287d4002b98SHong Zhang     Proc0   0  5  6  |  7  0  0  |  8  0
1288d4002b98SHong Zhang             9  0 10  | 11  0  0  | 12  0
1289d4002b98SHong Zhang     -------------------------------------
1290d4002b98SHong Zhang            13  0 14  | 15 16 17  |  0  0
1291d4002b98SHong Zhang     Proc1   0 18  0  | 19 20 21  |  0  0
1292d4002b98SHong Zhang             0  0  0  | 22 23  0  | 24  0
1293d4002b98SHong Zhang     -------------------------------------
1294d4002b98SHong Zhang     Proc2  25 26 27  |  0  0 28  | 29  0
1295d4002b98SHong Zhang            30  0  0  | 31 32 33  |  0 34
1296d4002b98SHong Zhang .ve
1297d4002b98SHong Zhang 
129827430b45SBarry Smith   This can be represented as a collection of submatrices as
1299d4002b98SHong Zhang 
1300d4002b98SHong Zhang .vb
1301d4002b98SHong Zhang       A B C
1302d4002b98SHong Zhang       D E F
1303d4002b98SHong Zhang       G H I
1304d4002b98SHong Zhang .ve
1305d4002b98SHong Zhang 
1306d4002b98SHong Zhang   Where the submatrices A,B,C are owned by proc0, D,E,F are
1307d4002b98SHong Zhang   owned by proc1, G,H,I are owned by proc2.
1308d4002b98SHong Zhang 
1309d4002b98SHong Zhang   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1310d4002b98SHong Zhang   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
1311d4002b98SHong Zhang   The 'M','N' parameters are 8,8, and have the same values on all procs.
1312d4002b98SHong Zhang 
1313d4002b98SHong Zhang   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
1314d4002b98SHong Zhang   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
1315d4002b98SHong Zhang   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
1316d4002b98SHong Zhang   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
131727430b45SBarry Smith   part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL`
1318d4002b98SHong Zhang   matrix, ans [DF] as another SeqSELL matrix.
1319d4002b98SHong Zhang 
132067be906fSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
1321d4002b98SHong Zhang   allocated for every row of the local diagonal submatrix, and o_nz
1322d4002b98SHong Zhang   storage locations are allocated for every row of the OFF-DIAGONAL submat.
132367be906fSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
1324d4002b98SHong Zhang   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
132527430b45SBarry Smith   In this case, the values of d_nz,o_nz are
1326d4002b98SHong Zhang .vb
132727430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
132827430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
132927430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
1330d4002b98SHong Zhang .ve
1331d4002b98SHong Zhang   We are allocating m*(d_nz+o_nz) storage locations for every proc. This
1332d4002b98SHong Zhang   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
1333d4002b98SHong Zhang   for proc3. i.e we are using 12+15+10=37 storage locations to store
1334d4002b98SHong Zhang   34 values.
1335d4002b98SHong Zhang 
133667be906fSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
1337a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
133827430b45SBarry Smith   In the above case the values for d_nnz,o_nnz are
1339d4002b98SHong Zhang .vb
134027430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
134127430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
134227430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
1343d4002b98SHong Zhang .ve
1344d4002b98SHong Zhang   Here the space allocated is according to nz (or maximum values in the nnz
1345d4002b98SHong Zhang   if nnz is provided) for DIAGONAL and OFF-DIAGONAL submatrices, i.e (2+2+3+2)*3+(1+4)*2=37
1346d4002b98SHong Zhang 
1347d4002b98SHong Zhang   Level: intermediate
1348d4002b98SHong Zhang 
134967be906fSBarry Smith   Notes:
135067be906fSBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
135167be906fSBarry Smith 
135267be906fSBarry Smith   The stored row and column indices begin with zero.
135367be906fSBarry Smith 
135467be906fSBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
135567be906fSBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
135667be906fSBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
135767be906fSBarry Smith 
135867be906fSBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
135967be906fSBarry Smith   as the submatrix which is obtained by extraction the part corresponding to
136067be906fSBarry Smith   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
136167be906fSBarry Smith   first row that belongs to the processor, r2 is the last row belonging to
136267be906fSBarry Smith   the this processor, and c1-c2 is range of indices of the local part of a
136367be906fSBarry Smith   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
136467be906fSBarry Smith   common case of a square matrix, the row and column ranges are the same and
136567be906fSBarry Smith   the DIAGONAL part is also square. The remaining portion of the local
136667be906fSBarry Smith   submatrix (mxN) constitute the OFF-DIAGONAL portion.
136767be906fSBarry Smith 
136867be906fSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
136967be906fSBarry Smith 
137067be906fSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
137167be906fSBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
137267be906fSBarry Smith   You can also run with the option -info and look for messages with the string
137367be906fSBarry Smith   malloc in them to see if additional memory allocation was needed.
137467be906fSBarry Smith 
137567be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatCreatesell()`,
137611a5261eSBarry Smith           `MATMPISELL`, `MatGetInfo()`, `PetscSplitOwnership()`, `MATSELL`
1377d4002b98SHong Zhang @*/
1378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISELLSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
1379d71ae5a4SJacob Faibussowitsch {
1380d4002b98SHong Zhang   PetscFunctionBegin;
1381d4002b98SHong Zhang   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
1382d4002b98SHong Zhang   PetscValidType(B, 1);
1383cac4c232SBarry Smith   PetscTryMethod(B, "MatMPISELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1385d4002b98SHong Zhang }
1386d4002b98SHong Zhang 
1387ed73aabaSBarry Smith /*MC
1388ed73aabaSBarry Smith    MATMPISELL - MATMPISELL = "mpisell" - A matrix type to be used for MPI sparse matrices,
1389ed73aabaSBarry Smith    based on the sliced Ellpack format
1390ed73aabaSBarry Smith 
139127430b45SBarry Smith    Options Database Key:
139220f4b53cSBarry Smith . -mat_type sell - sets the matrix type to `MATSELL` during a call to `MatSetFromOptions()`
1393ed73aabaSBarry Smith 
1394ed73aabaSBarry Smith    Level: beginner
1395ed73aabaSBarry Smith 
139667be906fSBarry Smith .seealso: `Mat`, `MatCreateSell()`, `MATSEQSELL`, `MATSELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
1397ed73aabaSBarry Smith M*/
1398ed73aabaSBarry Smith 
1399d4002b98SHong Zhang /*@C
140011a5261eSBarry Smith   MatCreateSELL - Creates a sparse parallel matrix in `MATSELL` format.
1401d4002b98SHong Zhang 
1402d083f849SBarry Smith   Collective
1403d4002b98SHong Zhang 
1404d4002b98SHong Zhang   Input Parameters:
1405d4002b98SHong Zhang + comm      - MPI communicator
140611a5261eSBarry Smith . m         - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
1407d4002b98SHong Zhang            This value should be the same as the local size used in creating the
1408d4002b98SHong Zhang            y vector for the matrix-vector product y = Ax.
1409d4002b98SHong Zhang . n         - This value should be the same as the local size used in creating the
141020f4b53cSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
141120f4b53cSBarry Smith        calculated if `N` is given) For square matrices n is almost always `m`.
141220f4b53cSBarry Smith . M         - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
141320f4b53cSBarry Smith . N         - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
1414d4002b98SHong Zhang . d_rlenmax - max number of nonzeros per row in DIAGONAL portion of local submatrix
1415d4002b98SHong Zhang                (same value is used for all local rows)
1416d4002b98SHong Zhang . d_rlen    - array containing the number of nonzeros in the various rows of the
1417d4002b98SHong Zhang             DIAGONAL portion of the local submatrix (possibly different for each row)
141820f4b53cSBarry Smith             or `NULL`, if d_rlenmax is used to specify the nonzero structure.
141920f4b53cSBarry Smith             The size of this array is equal to the number of local rows, i.e `m`.
1420d4002b98SHong Zhang . o_rlenmax - max number of nonzeros per row in the OFF-DIAGONAL portion of local
1421d4002b98SHong Zhang                submatrix (same value is used for all local rows).
1422d4002b98SHong Zhang - o_rlen    - array containing the number of nonzeros in the various rows of the
1423d4002b98SHong Zhang             OFF-DIAGONAL portion of the local submatrix (possibly different for
142420f4b53cSBarry Smith             each row) or `NULL`, if `o_rlenmax` is used to specify the nonzero
1425d4002b98SHong Zhang             structure. The size of this array is equal to the number
142620f4b53cSBarry Smith             of local rows, i.e `m`.
1427d4002b98SHong Zhang 
1428d4002b98SHong Zhang   Output Parameter:
1429d4002b98SHong Zhang . A - the matrix
1430d4002b98SHong Zhang 
143127430b45SBarry Smith   Options Database Key:
1432fe59aa6dSJacob Faibussowitsch . -mat_sell_oneindex - Internally use indexing starting at 1
143327430b45SBarry Smith         rather than 0.  When calling `MatSetValues()`,
143427430b45SBarry Smith         the user still MUST index entries starting at 0!
143527430b45SBarry Smith 
143627430b45SBarry Smith   Example:
143727430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
143827430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
143927430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
144027430b45SBarry Smith   as follows
144127430b45SBarry Smith 
144227430b45SBarry Smith .vb
144327430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
144427430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
144527430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
144627430b45SBarry Smith     -------------------------------------
144727430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
144827430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
144927430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
145027430b45SBarry Smith     -------------------------------------
145127430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
145227430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
145327430b45SBarry Smith .ve
145427430b45SBarry Smith 
145520f4b53cSBarry Smith   This can be represented as a collection of submatrices as
145627430b45SBarry Smith .vb
145727430b45SBarry Smith       A B C
145827430b45SBarry Smith       D E F
145927430b45SBarry Smith       G H I
146027430b45SBarry Smith .ve
146127430b45SBarry Smith 
146227430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
146327430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
146427430b45SBarry Smith 
146527430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
146627430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
146727430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
146827430b45SBarry Smith 
146927430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
147027430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
147127430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
147227430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
147327430b45SBarry Smith   part as `MATSEQSELL` matrices. For example, proc1 will store [E] as a `MATSEQSELL`
147427430b45SBarry Smith   matrix, ans [DF] as another `MATSEQSELL` matrix.
147527430b45SBarry Smith 
147627430b45SBarry Smith   When d_rlenmax, o_rlenmax parameters are specified, d_rlenmax storage elements are
147727430b45SBarry Smith   allocated for every row of the local diagonal submatrix, and o_rlenmax
147827430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
147927430b45SBarry Smith   One way to choose d_rlenmax and o_rlenmax is to use the max nonzerors per local
148027430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
148120f4b53cSBarry Smith   In this case, the values of d_rlenmax,o_rlenmax are
148227430b45SBarry Smith .vb
148320f4b53cSBarry Smith      proc0 - d_rlenmax = 2, o_rlenmax = 2
148420f4b53cSBarry Smith      proc1 - d_rlenmax = 3, o_rlenmax = 2
148520f4b53cSBarry Smith      proc2 - d_rlenmax = 1, o_rlenmax = 4
148627430b45SBarry Smith .ve
148727430b45SBarry Smith   We are allocating m*(d_rlenmax+o_rlenmax) storage locations for every proc. This
148827430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
148927430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
149027430b45SBarry Smith   34 values.
149127430b45SBarry Smith 
149220f4b53cSBarry Smith   When `d_rlen`, `o_rlen` parameters are specified, the storage is specified
149327430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
149420f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
149527430b45SBarry Smith .vb
149620f4b53cSBarry Smith      proc0 - d_nnz = [2,2,2] and o_nnz = [2,2,2]
149720f4b53cSBarry Smith      proc1 - d_nnz = [3,3,2] and o_nnz = [2,1,1]
149820f4b53cSBarry Smith      proc2 - d_nnz = [1,1]   and o_nnz = [4,4]
149927430b45SBarry Smith .ve
150027430b45SBarry Smith   Here the space allocated is still 37 though there are 34 nonzeros because
150127430b45SBarry Smith   the allocation is always done according to rlenmax.
150227430b45SBarry Smith 
150327430b45SBarry Smith   Level: intermediate
150427430b45SBarry Smith 
150527430b45SBarry Smith   Notes:
150611a5261eSBarry Smith   It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
1507f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
150811a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`]
1509d4002b98SHong Zhang 
1510d4002b98SHong Zhang   If the *_rlen parameter is given then the *_rlenmax parameter is ignored
1511d4002b98SHong Zhang 
151220f4b53cSBarry Smith   `m`, `n`, `M`, `N` parameters specify the size of the matrix, and its partitioning across
151320f4b53cSBarry Smith   processors, while `d_rlenmax`, `d_rlen`, `o_rlenmax` , `o_rlen` parameters specify the approximate
1514d4002b98SHong Zhang   storage requirements for this matrix.
1515d4002b98SHong Zhang 
151611a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
1517d4002b98SHong Zhang   processor than it must be used on all processors that share the object for
1518d4002b98SHong Zhang   that argument.
1519d4002b98SHong Zhang 
1520d4002b98SHong Zhang   The user MUST specify either the local or global matrix dimensions
1521d4002b98SHong Zhang   (possibly both).
1522d4002b98SHong Zhang 
1523d4002b98SHong Zhang   The parallel matrix is partitioned across processors such that the
1524d4002b98SHong Zhang   first m0 rows belong to process 0, the next m1 rows belong to
1525d4002b98SHong Zhang   process 1, the next m2 rows belong to process 2 etc.. where
1526d4002b98SHong Zhang   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
152720f4b53cSBarry Smith   values corresponding to [`m` x `N`] submatrix.
1528d4002b98SHong Zhang 
1529d4002b98SHong Zhang   The columns are logically partitioned with the n0 columns belonging
1530d4002b98SHong Zhang   to 0th partition, the next n1 columns belonging to the next
153120f4b53cSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter `n`.
1532d4002b98SHong Zhang 
1533d4002b98SHong Zhang   The DIAGONAL portion of the local submatrix on any given processor
153420f4b53cSBarry Smith   is the submatrix corresponding to the rows and columns `m`, `n`
1535d4002b98SHong Zhang   corresponding to the given processor. i.e diagonal matrix on
1536d4002b98SHong Zhang   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
1537d4002b98SHong Zhang   etc. The remaining portion of the local submatrix [m x (N-n)]
1538d4002b98SHong Zhang   constitute the OFF-DIAGONAL portion. The example below better
1539d4002b98SHong Zhang   illustrates this concept.
1540d4002b98SHong Zhang 
1541d4002b98SHong Zhang   For a square global matrix we define each processor's diagonal portion
1542d4002b98SHong Zhang   to be its local rows and the corresponding columns (a square submatrix);
1543d4002b98SHong Zhang   each processor's off-diagonal portion encompasses the remainder of the
1544d4002b98SHong Zhang   local matrix (a rectangular submatrix).
1545d4002b98SHong Zhang 
154620f4b53cSBarry Smith   If `o_rlen`, `d_rlen` are specified, then `o_rlenmax`, and `d_rlenmax` are ignored.
1547d4002b98SHong Zhang 
1548d4002b98SHong Zhang   When calling this routine with a single process communicator, a matrix of
154911a5261eSBarry Smith   type `MATSEQSELL` is returned.  If a matrix of type `MATMPISELL` is desired for this
155027430b45SBarry Smith   type of communicator, use the construction mechanism
1551d4002b98SHong Zhang .vb
155227430b45SBarry Smith    MatCreate(...,&A);
155327430b45SBarry Smith    MatSetType(A,MATMPISELL);
155427430b45SBarry Smith    MatSetSizes(A, m,n,M,N);
155527430b45SBarry Smith    MatMPISELLSetPreallocation(A,...);
1556d4002b98SHong Zhang .ve
1557d4002b98SHong Zhang 
155867be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MatCreate()`, `MatCreateSeqSELL()`, `MatSetValues()`, `MatMPISELLSetPreallocation()`, `MatMPISELLSetPreallocationSELL()`,
1559db781477SPatrick Sanan           `MATMPISELL`, `MatCreateMPISELLWithArrays()`
1560d4002b98SHong Zhang @*/
1561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_rlenmax, const PetscInt d_rlen[], PetscInt o_rlenmax, const PetscInt o_rlen[], Mat *A)
1562d71ae5a4SJacob Faibussowitsch {
1563d4002b98SHong Zhang   PetscMPIInt size;
1564d4002b98SHong Zhang 
1565d4002b98SHong Zhang   PetscFunctionBegin;
15669566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
15679566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
15689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
1569d4002b98SHong Zhang   if (size > 1) {
15709566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPISELL));
15719566063dSJacob Faibussowitsch     PetscCall(MatMPISELLSetPreallocation(*A, d_rlenmax, d_rlen, o_rlenmax, o_rlen));
1572d4002b98SHong Zhang   } else {
15739566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQSELL));
15749566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(*A, d_rlenmax, d_rlen));
1575d4002b98SHong Zhang   }
15763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1577d4002b98SHong Zhang }
1578d4002b98SHong Zhang 
1579fa078d78SJacob Faibussowitsch /*@C
1580fa078d78SJacob Faibussowitsch   MatMPISELLGetSeqSELL - Returns the local pieces of this distributed matrix
1581fa078d78SJacob Faibussowitsch 
1582fa078d78SJacob Faibussowitsch   Not Collective
1583fa078d78SJacob Faibussowitsch 
1584fa078d78SJacob Faibussowitsch   Input Parameter:
1585fa078d78SJacob Faibussowitsch . A - the `MATMPISELL` matrix
1586fa078d78SJacob Faibussowitsch 
1587fa078d78SJacob Faibussowitsch   Output Parameters:
1588fa078d78SJacob Faibussowitsch + Ad     - The diagonal portion of `A`
15894cf0e950SBarry Smith . Ao     - The off-diagonal portion of `A`
1590fa078d78SJacob Faibussowitsch - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
1591fa078d78SJacob Faibussowitsch 
1592fa078d78SJacob Faibussowitsch   Level: advanced
1593fa078d78SJacob Faibussowitsch 
1594fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL`
1595fa078d78SJacob Faibussowitsch @*/
1596fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetSeqSELL(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
1597fa078d78SJacob Faibussowitsch {
1598fa078d78SJacob Faibussowitsch   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
1599fa078d78SJacob Faibussowitsch   PetscBool    flg;
1600fa078d78SJacob Faibussowitsch 
1601fa078d78SJacob Faibussowitsch   PetscFunctionBegin;
1602fa078d78SJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &flg));
1603fa078d78SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPISELL matrix as input");
1604fa078d78SJacob Faibussowitsch   if (Ad) *Ad = a->A;
1605fa078d78SJacob Faibussowitsch   if (Ao) *Ao = a->B;
1606fa078d78SJacob Faibussowitsch   if (colmap) *colmap = a->garray;
1607fa078d78SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1608fa078d78SJacob Faibussowitsch }
1609fa078d78SJacob Faibussowitsch 
1610fa078d78SJacob Faibussowitsch /*@C
1611fa078d78SJacob Faibussowitsch   MatMPISELLGetLocalMatCondensed - Creates a `MATSEQSELL` matrix from an `MATMPISELL` matrix by
1612fa078d78SJacob Faibussowitsch   taking all its local rows and NON-ZERO columns
1613fa078d78SJacob Faibussowitsch 
1614fa078d78SJacob Faibussowitsch   Not Collective
1615fa078d78SJacob Faibussowitsch 
1616fa078d78SJacob Faibussowitsch   Input Parameters:
1617fa078d78SJacob Faibussowitsch + A     - the matrix
1618fa078d78SJacob Faibussowitsch . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
1619fa078d78SJacob Faibussowitsch . row   - index sets of rows to extract (or `NULL`)
1620fa078d78SJacob Faibussowitsch - col   - index sets of columns to extract (or `NULL`)
1621fa078d78SJacob Faibussowitsch 
1622fa078d78SJacob Faibussowitsch   Output Parameter:
1623fa078d78SJacob Faibussowitsch . A_loc - the local sequential matrix generated
1624fa078d78SJacob Faibussowitsch 
1625fa078d78SJacob Faibussowitsch   Level: advanced
1626fa078d78SJacob Faibussowitsch 
1627fa078d78SJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MATMPISELL`, `MatGetOwnershipRange()`, `MatMPISELLGetLocalMat()`
1628fa078d78SJacob Faibussowitsch @*/
1629fa078d78SJacob Faibussowitsch PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
1630fa078d78SJacob Faibussowitsch {
1631fa078d78SJacob Faibussowitsch   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
1632fa078d78SJacob Faibussowitsch   PetscInt     i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
1633fa078d78SJacob Faibussowitsch   IS           isrowa, iscola;
1634fa078d78SJacob Faibussowitsch   Mat         *aloc;
1635fa078d78SJacob Faibussowitsch   PetscBool    match;
1636fa078d78SJacob Faibussowitsch 
1637fa078d78SJacob Faibussowitsch   PetscFunctionBegin;
1638fa078d78SJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPISELL, &match));
1639fa078d78SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPISELL matrix as input");
1640fa078d78SJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
1641fa078d78SJacob Faibussowitsch   if (!row) {
1642fa078d78SJacob Faibussowitsch     start = A->rmap->rstart;
1643fa078d78SJacob Faibussowitsch     end   = A->rmap->rend;
1644fa078d78SJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
1645fa078d78SJacob Faibussowitsch   } else {
1646fa078d78SJacob Faibussowitsch     isrowa = *row;
1647fa078d78SJacob Faibussowitsch   }
1648fa078d78SJacob Faibussowitsch   if (!col) {
1649fa078d78SJacob Faibussowitsch     start = A->cmap->rstart;
1650fa078d78SJacob Faibussowitsch     cmap  = a->garray;
1651fa078d78SJacob Faibussowitsch     nzA   = a->A->cmap->n;
1652fa078d78SJacob Faibussowitsch     nzB   = a->B->cmap->n;
1653fa078d78SJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
1654fa078d78SJacob Faibussowitsch     ncols = 0;
1655fa078d78SJacob Faibussowitsch     for (i = 0; i < nzB; i++) {
1656fa078d78SJacob Faibussowitsch       if (cmap[i] < start) idx[ncols++] = cmap[i];
1657fa078d78SJacob Faibussowitsch       else break;
1658fa078d78SJacob Faibussowitsch     }
1659fa078d78SJacob Faibussowitsch     imark = i;
1660fa078d78SJacob Faibussowitsch     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
1661fa078d78SJacob Faibussowitsch     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
1662fa078d78SJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
1663fa078d78SJacob Faibussowitsch   } else {
1664fa078d78SJacob Faibussowitsch     iscola = *col;
1665fa078d78SJacob Faibussowitsch   }
1666fa078d78SJacob Faibussowitsch   if (scall != MAT_INITIAL_MATRIX) {
1667fa078d78SJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
1668fa078d78SJacob Faibussowitsch     aloc[0] = *A_loc;
1669fa078d78SJacob Faibussowitsch   }
1670fa078d78SJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
1671fa078d78SJacob Faibussowitsch   *A_loc = aloc[0];
1672fa078d78SJacob Faibussowitsch   PetscCall(PetscFree(aloc));
1673fa078d78SJacob Faibussowitsch   if (!row) PetscCall(ISDestroy(&isrowa));
1674fa078d78SJacob Faibussowitsch   if (!col) PetscCall(ISDestroy(&iscola));
1675fa078d78SJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
1676fa078d78SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1677fa078d78SJacob Faibussowitsch }
1678fa078d78SJacob Faibussowitsch 
1679d4002b98SHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
1680d4002b98SHong Zhang 
1681d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPISELL_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
1682d71ae5a4SJacob Faibussowitsch {
1683d4002b98SHong Zhang   Mat_MPISELL *a = (Mat_MPISELL *)A->data;
1684d4002b98SHong Zhang   Mat          B;
1685d4002b98SHong Zhang   Mat_MPIAIJ  *b;
1686d4002b98SHong Zhang 
1687d4002b98SHong Zhang   PetscFunctionBegin;
168828b400f6SJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
1689d4002b98SHong Zhang 
169094a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
169194a8b381SRichard Tran Mills     B = *newmat;
169294a8b381SRichard Tran Mills   } else {
16939566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
16949566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
16959566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
16969566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
16979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
16989566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
169994a8b381SRichard Tran Mills   }
1700d4002b98SHong Zhang   b = (Mat_MPIAIJ *)B->data;
170194a8b381SRichard Tran Mills 
170294a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
17039566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
17049566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
170594a8b381SRichard Tran Mills   } else {
17069566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
17079566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
17089566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPISELL(A));
17099566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
17109566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqSELL_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
17119566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
17129566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
17139566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
17149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
171594a8b381SRichard Tran Mills   }
1716d4002b98SHong Zhang 
1717d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
17189566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
1719d4002b98SHong Zhang   } else {
1720d4002b98SHong Zhang     *newmat = B;
1721d4002b98SHong Zhang   }
17223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1723d4002b98SHong Zhang }
1724d4002b98SHong Zhang 
1725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
1726d71ae5a4SJacob Faibussowitsch {
1727d4002b98SHong Zhang   Mat_MPIAIJ  *a = (Mat_MPIAIJ *)A->data;
1728d4002b98SHong Zhang   Mat          B;
1729d4002b98SHong Zhang   Mat_MPISELL *b;
1730d4002b98SHong Zhang 
1731d4002b98SHong Zhang   PetscFunctionBegin;
173228b400f6SJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
1733d4002b98SHong Zhang 
173494a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
173594a8b381SRichard Tran Mills     B = *newmat;
173694a8b381SRichard Tran Mills   } else {
17372d1451d4SHong Zhang     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)a->A->data, *Ba = (Mat_SeqAIJ *)a->B->data;
17382d1451d4SHong Zhang     PetscInt    i, d_nz = 0, o_nz = 0, m = A->rmap->N, n = A->cmap->N, lm = A->rmap->n, ln = A->cmap->n;
17392d1451d4SHong Zhang     PetscInt   *d_nnz, *o_nnz;
17402d1451d4SHong Zhang     PetscCall(PetscMalloc2(lm, &d_nnz, lm, &o_nnz));
17412d1451d4SHong Zhang     for (i = 0; i < lm; i++) {
17422d1451d4SHong Zhang       d_nnz[i] = Aa->i[i + 1] - Aa->i[i];
17432d1451d4SHong Zhang       o_nnz[i] = Ba->i[i + 1] - Ba->i[i];
17442d1451d4SHong Zhang       if (d_nnz[i] > d_nz) d_nz = d_nnz[i];
17452d1451d4SHong Zhang       if (o_nnz[i] > o_nz) o_nz = o_nnz[i];
17462d1451d4SHong Zhang     }
17479566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
17489566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPISELL));
17492d1451d4SHong Zhang     PetscCall(MatSetSizes(B, lm, ln, m, n));
17509566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
17512d1451d4SHong Zhang     PetscCall(MatSeqSELLSetPreallocation(B, d_nz, d_nnz));
17522d1451d4SHong Zhang     PetscCall(MatMPISELLSetPreallocation(B, d_nz, d_nnz, o_nz, o_nnz));
17532d1451d4SHong Zhang     PetscCall(PetscFree2(d_nnz, o_nnz));
175494a8b381SRichard Tran Mills   }
1755d4002b98SHong Zhang   b = (Mat_MPISELL *)B->data;
175694a8b381SRichard Tran Mills 
175794a8b381SRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
17589566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_REUSE_MATRIX, &b->A));
17599566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_REUSE_MATRIX, &b->B));
176094a8b381SRichard Tran Mills   } else {
17619566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
17629566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
17639566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->A, MATSEQSELL, MAT_INITIAL_MATRIX, &b->A));
17649566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqAIJ_SeqSELL(a->B, MATSEQSELL, MAT_INITIAL_MATRIX, &b->B));
17659566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
17669566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
17672d1451d4SHong Zhang     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
17682d1451d4SHong Zhang     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
176994a8b381SRichard Tran Mills   }
1770d4002b98SHong Zhang 
1771d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
17729566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
1773d4002b98SHong Zhang   } else {
1774d4002b98SHong Zhang     *newmat = B;
1775d4002b98SHong Zhang   }
17763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1777d4002b98SHong Zhang }
1778d4002b98SHong Zhang 
1779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPISELL(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1780d71ae5a4SJacob Faibussowitsch {
1781d4002b98SHong Zhang   Mat_MPISELL *mat = (Mat_MPISELL *)matin->data;
1782f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
1783d4002b98SHong Zhang 
1784d4002b98SHong Zhang   PetscFunctionBegin;
1785d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) {
17869566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
17873ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1788d4002b98SHong Zhang   }
1789d4002b98SHong Zhang 
179048a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
1791d4002b98SHong Zhang 
1792d4002b98SHong Zhang   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1793d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
17949566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
1795d4002b98SHong Zhang       its--;
1796d4002b98SHong Zhang     }
1797d4002b98SHong Zhang 
1798d4002b98SHong Zhang     while (its--) {
17999566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
18009566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1801d4002b98SHong Zhang 
1802d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
18039566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
18049566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1805d4002b98SHong Zhang 
1806d4002b98SHong Zhang       /* local sweep */
18079566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
1808d4002b98SHong Zhang     }
1809d4002b98SHong Zhang   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1810d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
18119566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
1812d4002b98SHong Zhang       its--;
1813d4002b98SHong Zhang     }
1814d4002b98SHong Zhang     while (its--) {
18159566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
18169566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1817d4002b98SHong Zhang 
1818d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
18199566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
18209566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1821d4002b98SHong Zhang 
1822d4002b98SHong Zhang       /* local sweep */
18239566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
1824d4002b98SHong Zhang     }
1825d4002b98SHong Zhang   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1826d4002b98SHong Zhang     if (flag & SOR_ZERO_INITIAL_GUESS) {
18279566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
1828d4002b98SHong Zhang       its--;
1829d4002b98SHong Zhang     }
1830d4002b98SHong Zhang     while (its--) {
18319566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
18329566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1833d4002b98SHong Zhang 
1834d4002b98SHong Zhang       /* update rhs: bb1 = bb - B*x */
18359566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
18369566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1837d4002b98SHong Zhang 
1838d4002b98SHong Zhang       /* local sweep */
18399566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
1840d4002b98SHong Zhang     }
1841d4002b98SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1842d4002b98SHong Zhang 
18439566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1844d4002b98SHong Zhang 
1845d4002b98SHong Zhang   matin->factorerrortype = mat->A->factorerrortype;
18463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1847d4002b98SHong Zhang }
1848d4002b98SHong Zhang 
1849b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA)
1850b5917f1bSHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPISELL_MPISELLCUDA(Mat, MatType, MatReuse, Mat *);
1851b5917f1bSHong Zhang #endif
1852b5917f1bSHong Zhang 
1853d4002b98SHong Zhang /*MC
1854d4002b98SHong Zhang    MATMPISELL - MATMPISELL = "MPISELL" - A matrix type to be used for parallel sparse matrices.
1855d4002b98SHong Zhang 
1856d4002b98SHong Zhang    Options Database Keys:
185711a5261eSBarry Smith . -mat_type mpisell - sets the matrix type to `MATMPISELL` during a call to `MatSetFromOptions()`
1858d4002b98SHong Zhang 
1859d4002b98SHong Zhang   Level: beginner
1860d4002b98SHong Zhang 
186167be906fSBarry Smith .seealso: `Mat`, `MATSELL`, `MATSEQSELL` `MatCreateSELL()`
1862d4002b98SHong Zhang M*/
1863d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISELL(Mat B)
1864d71ae5a4SJacob Faibussowitsch {
1865d4002b98SHong Zhang   Mat_MPISELL *b;
1866d4002b98SHong Zhang   PetscMPIInt  size;
1867d4002b98SHong Zhang 
1868d4002b98SHong Zhang   PetscFunctionBegin;
18699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
18704dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
1871d4002b98SHong Zhang   B->data       = (void *)b;
1872aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
1873d4002b98SHong Zhang   B->assembled  = PETSC_FALSE;
1874d4002b98SHong Zhang   B->insertmode = NOT_SET_VALUES;
1875d4002b98SHong Zhang   b->size       = size;
18769566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
1877d4002b98SHong Zhang   /* build cache for off array entries formed */
18789566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
1879d4002b98SHong Zhang 
1880d4002b98SHong Zhang   b->donotstash  = PETSC_FALSE;
1881f4259b30SLisandro Dalcin   b->colmap      = NULL;
1882f4259b30SLisandro Dalcin   b->garray      = NULL;
1883d4002b98SHong Zhang   b->roworiented = PETSC_TRUE;
1884d4002b98SHong Zhang 
1885d4002b98SHong Zhang   /* stuff used for matrix vector multiply */
1886d4002b98SHong Zhang   b->lvec  = NULL;
1887d4002b98SHong Zhang   b->Mvctx = NULL;
1888d4002b98SHong Zhang 
1889d4002b98SHong Zhang   /* stuff for MatGetRow() */
1890f4259b30SLisandro Dalcin   b->rowindices   = NULL;
1891f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
1892d4002b98SHong Zhang   b->getrowactive = PETSC_FALSE;
1893d4002b98SHong Zhang 
18949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISELL));
18959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISELL));
18969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPISELL));
18979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISELLSetPreallocation_C", MatMPISELLSetPreallocation_MPISELL));
18989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpiaij_C", MatConvert_MPISELL_MPIAIJ));
1899b5917f1bSHong Zhang #if defined(PETSC_HAVE_CUDA)
1900b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisell_mpisellcuda_C", MatConvert_MPISELL_MPISELLCUDA));
1901b5917f1bSHong Zhang #endif
19029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPISELL));
19039566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISELL));
19043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1905d4002b98SHong Zhang }
1906