xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 071fcb05f2a6aea8aef2c2090580530b9e9df77e)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h>  /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
85f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
94243e2ceSHong Zhang 
10d4002b98SHong Zhang   #include <immintrin.h>
11d4002b98SHong Zhang 
12d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
13d4002b98SHong Zhang   #define _MM_SCALE_8    8
14d4002b98SHong Zhang   #endif
15d4002b98SHong Zhang 
16d4002b98SHong Zhang   #if defined(__AVX512F__)
17d4002b98SHong Zhang   /* these do not work
18d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
19d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
20d4002b98SHong Zhang   */
21d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
22d4002b98SHong Zhang     /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
23ef588d5cSRichard Tran Mills     vec_idx  = _mm256_loadu_si256((__m256i const*)acolidx); \
24ef588d5cSRichard Tran Mills     vec_vals = _mm512_loadu_pd(aval); \
25d4002b98SHong Zhang     vec_x    = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \
26a48a6482SHong Zhang     vec_y    = _mm512_fmadd_pd(vec_x,vec_vals,vec_y)
275f70456aSHong Zhang   #elif defined(__AVX2__) && defined(__FMA__)
28a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
29ef588d5cSRichard Tran Mills     vec_vals = _mm256_loadu_pd(aval); \
30ef588d5cSRichard Tran Mills     vec_idx  = _mm_loadu_si128((__m128i const*)acolidx); /* SSE2 */ \
31a48a6482SHong Zhang     vec_x    = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \
32a48a6482SHong Zhang     vec_y    = _mm256_fmadd_pd(vec_x,vec_vals,vec_y)
33d4002b98SHong Zhang   #endif
34d4002b98SHong Zhang #endif  /* PETSC_HAVE_IMMINTRIN_H */
35d4002b98SHong Zhang 
36d4002b98SHong Zhang /*@C
37d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
38d4002b98SHong Zhang  the user should preallocate the matrix storage by setting the parameter nz
39d4002b98SHong Zhang  (or the array nnz).  By setting these parameters accurately, performance
40d4002b98SHong Zhang  during matrix assembly can be increased significantly.
41d4002b98SHong Zhang 
42d083f849SBarry Smith  Collective
43d4002b98SHong Zhang 
44d4002b98SHong Zhang  Input Parameters:
45d4002b98SHong Zhang  +  B - The matrix
46d4002b98SHong Zhang  .  nz - number of nonzeros per row (same for all rows)
47d4002b98SHong Zhang  -  nnz - array containing the number of nonzeros in the various rows
48d4002b98SHong Zhang  (possibly different for each row) or NULL
49d4002b98SHong Zhang 
50d4002b98SHong Zhang  Notes:
51d4002b98SHong Zhang  If nnz is given then nz is ignored.
52d4002b98SHong Zhang 
53d4002b98SHong Zhang  Specify the preallocated storage with either nz or nnz (not both).
54d4002b98SHong Zhang  Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
55d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
56d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
57d4002b98SHong Zhang 
58d4002b98SHong Zhang  You can call MatGetInfo() to get information on how effective the preallocation was;
59d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
60d4002b98SHong Zhang  You can also run with the option -info and look for messages with the string
61d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
62d4002b98SHong Zhang 
63d4002b98SHong Zhang  Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix
64d4002b98SHong Zhang  entries or columns indices.
65d4002b98SHong Zhang 
66c7ee91abSRichard Tran Mills  The maximum number of nonzeos in any row should be as accurate as possible.
67c7ee91abSRichard Tran Mills  If it is underestimated, you will get bad performance due to reallocation
68d4002b98SHong Zhang  (MatSeqXSELLReallocateSELL).
69d4002b98SHong Zhang 
70d4002b98SHong Zhang  Level: intermediate
71d4002b98SHong Zhang 
72d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo()
73d4002b98SHong Zhang 
74d4002b98SHong Zhang  @*/
75d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])
76d4002b98SHong Zhang {
77d4002b98SHong Zhang   PetscErrorCode ierr;
78d4002b98SHong Zhang 
79d4002b98SHong Zhang   PetscFunctionBegin;
80d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
81d4002b98SHong Zhang   PetscValidType(B,1);
82d4002b98SHong Zhang   ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr);
83d4002b98SHong Zhang   PetscFunctionReturn(0);
84d4002b98SHong Zhang }
85d4002b98SHong Zhang 
86d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])
87d4002b98SHong Zhang {
88d4002b98SHong Zhang   Mat_SeqSELL    *b;
89d4002b98SHong Zhang   PetscInt       i,j,totalslices;
90d4002b98SHong Zhang   PetscBool      skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE;
91d4002b98SHong Zhang   PetscErrorCode ierr;
92d4002b98SHong Zhang 
93d4002b98SHong Zhang   PetscFunctionBegin;
94d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
95d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
96d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
97d4002b98SHong Zhang     maxallocrow    = 0;
98d4002b98SHong Zhang   }
99d4002b98SHong Zhang 
100d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
101d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
102d4002b98SHong Zhang 
103d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
104d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
105d4002b98SHong Zhang   if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow);
106d4002b98SHong Zhang   if (rlen) {
107d4002b98SHong Zhang     for (i=0; i<B->rmap->n; i++) {
108d4002b98SHong Zhang       if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]);
109d4002b98SHong Zhang       if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n);
110d4002b98SHong Zhang     }
111d4002b98SHong Zhang   }
112d4002b98SHong Zhang 
113d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
114d4002b98SHong Zhang 
115d4002b98SHong Zhang   b = (Mat_SeqSELL*)B->data;
116d4002b98SHong Zhang 
117d4002b98SHong Zhang   totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */
118d4002b98SHong Zhang   b->totalslices = totalslices;
119d4002b98SHong Zhang   if (!skipallocation) {
120994fe344SLisandro Dalcin     if (B->rmap->n & 0x07) {ierr = PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n);CHKERRQ(ierr);}
121d4002b98SHong Zhang 
122d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
123d4002b98SHong Zhang       ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr);
124d4002b98SHong Zhang       ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
125d4002b98SHong Zhang     }
126d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
127d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
128d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
129d4002b98SHong Zhang       for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow;
130d4002b98SHong Zhang     } else {
131d4002b98SHong Zhang       maxallocrow = 0;
132d4002b98SHong Zhang       b->sliidx[0] = 0;
133d4002b98SHong Zhang       for (i=1; i<totalslices; i++) {
134d4002b98SHong Zhang         b->sliidx[i] = 0;
135d4002b98SHong Zhang         for (j=0;j<8;j++) {
136d4002b98SHong Zhang           b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]);
137d4002b98SHong Zhang         }
138d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i],maxallocrow);
139d4002b98SHong Zhang         b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i];
140d4002b98SHong Zhang       }
141d4002b98SHong Zhang       /* last slice */
142d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
143d4002b98SHong Zhang       for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]);
144d4002b98SHong Zhang       maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow);
145d4002b98SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices];
146d4002b98SHong Zhang     }
147d4002b98SHong Zhang 
148d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
149d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
150d4002b98SHong Zhang     ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr);
151d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
152d4002b98SHong Zhang     ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr);
153d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
154d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
155d4002b98SHong Zhang     ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr);
156d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr);
157d4002b98SHong Zhang 
158d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
159d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
160d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
161d4002b98SHong Zhang   } else {
162d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
163d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
164d4002b98SHong Zhang   }
165d4002b98SHong Zhang 
166d4002b98SHong Zhang   b->nz               = 0;
167d4002b98SHong Zhang   b->maxallocrow      = maxallocrow;
168d4002b98SHong Zhang   b->rlenmax          = maxallocrow;
169d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
170d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
171d4002b98SHong Zhang   if (realalloc) {
172d4002b98SHong Zhang     ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
173d4002b98SHong Zhang   }
174d4002b98SHong Zhang   PetscFunctionReturn(0);
175d4002b98SHong Zhang }
176d4002b98SHong Zhang 
1776108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1786108893eSStefano Zampini {
1796108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL*)A->data;
1806108893eSStefano Zampini   PetscInt    shift;
1816108893eSStefano Zampini 
1826108893eSStefano Zampini   PetscFunctionBegin;
1836108893eSStefano Zampini   if (row < 0 || row >= A->rmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range",row);
1846108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
1856108893eSStefano Zampini   shift = a->sliidx[row>>3]+(row&0x07);
1866108893eSStefano Zampini   if (!a->getrowcols) {
1876108893eSStefano Zampini     PetscErrorCode ierr;
1886108893eSStefano Zampini 
1896108893eSStefano Zampini     ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr);
1906108893eSStefano Zampini   }
1916108893eSStefano Zampini   if (idx) {
1926108893eSStefano Zampini     PetscInt j;
1936108893eSStefano Zampini     for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j];
1946108893eSStefano Zampini     *idx = a->getrowcols;
1956108893eSStefano Zampini   }
1966108893eSStefano Zampini   if (v) {
1976108893eSStefano Zampini     PetscInt j;
1986108893eSStefano Zampini     for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j];
1996108893eSStefano Zampini     *v = a->getrowvals;
2006108893eSStefano Zampini   }
2016108893eSStefano Zampini   PetscFunctionReturn(0);
2026108893eSStefano Zampini }
2036108893eSStefano Zampini 
2046108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
2056108893eSStefano Zampini {
2066108893eSStefano Zampini   PetscFunctionBegin;
2076108893eSStefano Zampini   PetscFunctionReturn(0);
2086108893eSStefano Zampini }
2096108893eSStefano Zampini 
210d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
211d4002b98SHong Zhang {
212d4002b98SHong Zhang   Mat            B;
213d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
214e3f1f374SStefano Zampini   PetscInt       i;
215d4002b98SHong Zhang   PetscErrorCode ierr;
216d4002b98SHong Zhang 
217d4002b98SHong Zhang   PetscFunctionBegin;
218ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
219ad013a7bSRichard Tran Mills     B    = *newmat;
220e3f1f374SStefano Zampini     ierr = MatZeroEntries(B);CHKERRQ(ierr);
221ad013a7bSRichard Tran Mills   } else {
222d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
223d4002b98SHong Zhang     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
224d4002b98SHong Zhang     ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
225d4002b98SHong Zhang     ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr);
226ad013a7bSRichard Tran Mills   }
227d4002b98SHong Zhang 
228e3f1f374SStefano Zampini   for (i=0; i<A->rmap->n; i++) {
229e108cb99SStefano Zampini     PetscInt    nz = 0,*cols = NULL;
230e108cb99SStefano Zampini     PetscScalar *vals = NULL;
231e3f1f374SStefano Zampini 
232e3f1f374SStefano Zampini     ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr);
233e3f1f374SStefano Zampini     ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
234e3f1f374SStefano Zampini     ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr);
235d4002b98SHong Zhang   }
236e3f1f374SStefano Zampini 
237d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
239d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
240d4002b98SHong Zhang 
241d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
242d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
243d4002b98SHong Zhang   } else {
244d4002b98SHong Zhang     *newmat = B;
245d4002b98SHong Zhang   }
246d4002b98SHong Zhang   PetscFunctionReturn(0);
247d4002b98SHong Zhang }
248d4002b98SHong Zhang 
249d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
250d4002b98SHong Zhang 
251d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
252d4002b98SHong Zhang {
253d4002b98SHong Zhang   Mat               B;
254d4002b98SHong Zhang   Mat_SeqAIJ        *a=(Mat_SeqAIJ*)A->data;
255d4002b98SHong Zhang   PetscInt          *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols;
256d4002b98SHong Zhang   const PetscInt    *cols;
257d4002b98SHong Zhang   const PetscScalar *vals;
258d4002b98SHong Zhang   PetscErrorCode    ierr;
259d4002b98SHong Zhang 
260d4002b98SHong Zhang   PetscFunctionBegin;
261ad013a7bSRichard Tran Mills 
262ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
263ad013a7bSRichard Tran Mills     B = *newmat;
264ad013a7bSRichard Tran Mills   } else {
265d4002b98SHong Zhang     /* Can we just use ilen? */
266d4002b98SHong Zhang     ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr);
267d4002b98SHong Zhang     for (i=0; i<m; i++) {
268d4002b98SHong Zhang       rowlengths[i] = ai[i+1] - ai[i];
269d4002b98SHong Zhang     }
270d4002b98SHong Zhang 
271d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
272d4002b98SHong Zhang     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
273d4002b98SHong Zhang     ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr);
274d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr);
275d4002b98SHong Zhang     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
276ad013a7bSRichard Tran Mills   }
277d4002b98SHong Zhang 
278d4002b98SHong Zhang   for (row=0; row<m; row++) {
279d4002b98SHong Zhang     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
280d4002b98SHong Zhang     ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
281d4002b98SHong Zhang     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
282d4002b98SHong Zhang   }
283d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
284d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
285d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
286d4002b98SHong Zhang 
287d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
288d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
289d4002b98SHong Zhang   } else {
290d4002b98SHong Zhang     *newmat = B;
291d4002b98SHong Zhang   }
292d4002b98SHong Zhang   PetscFunctionReturn(0);
293d4002b98SHong Zhang }
294d4002b98SHong Zhang 
295d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy)
296d4002b98SHong Zhang {
297d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
298d4002b98SHong Zhang   PetscScalar       *y;
299d4002b98SHong Zhang   const PetscScalar *x;
300d4002b98SHong Zhang   const MatScalar   *aval=a->val;
301d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
302d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
3037285fed1SHong Zhang   PetscInt          i,j;
304d4002b98SHong Zhang   PetscErrorCode    ierr;
305d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
306d4002b98SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
307d4002b98SHong Zhang   __m256i           vec_idx;
308d4002b98SHong Zhang   __mmask8          mask;
309d4002b98SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
310d4002b98SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
3115f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
312a48a6482SHong Zhang   __m128i           vec_idx;
313a48a6482SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
314a48a6482SHong Zhang   MatScalar         yval;
315a48a6482SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
31621cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
317d4002b98SHong Zhang   __m128d           vec_x_tmp;
318d4002b98SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
319d4002b98SHong Zhang   MatScalar         yval;
320d4002b98SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
321d4002b98SHong Zhang #else
322d4002b98SHong Zhang   PetscScalar       sum[8];
323d4002b98SHong Zhang #endif
324d4002b98SHong Zhang 
325d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
326d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
327d4002b98SHong Zhang #endif
328d4002b98SHong Zhang 
329d4002b98SHong Zhang   PetscFunctionBegin;
330d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
331d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
332d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
333d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
334d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
335d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
336d4002b98SHong Zhang 
337d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
338d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
339d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
340d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
341d4002b98SHong Zhang 
34238efe8efSHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
343d4002b98SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
344d4002b98SHong Zhang     case 3:
345d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
346d4002b98SHong Zhang       acolidx += 8; aval += 8;
347d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
348d4002b98SHong Zhang       acolidx += 8; aval += 8;
349d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
350d4002b98SHong Zhang       acolidx += 8; aval += 8;
351d4002b98SHong Zhang       j += 3;
352d4002b98SHong Zhang       break;
353d4002b98SHong Zhang     case 2:
354d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
355d4002b98SHong Zhang       acolidx += 8; aval += 8;
356d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
357d4002b98SHong Zhang       acolidx += 8; aval += 8;
358d4002b98SHong Zhang       j += 2;
359d4002b98SHong Zhang       break;
360d4002b98SHong Zhang     case 1:
361d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
362d4002b98SHong Zhang       acolidx += 8; aval += 8;
363d4002b98SHong Zhang       j += 1;
364d4002b98SHong Zhang       break;
365d4002b98SHong Zhang     }
366d4002b98SHong Zhang     #pragma novector
367d4002b98SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
368d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
369d4002b98SHong Zhang       acolidx += 8; aval += 8;
370d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
371d4002b98SHong Zhang       acolidx += 8; aval += 8;
372d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
373d4002b98SHong Zhang       acolidx += 8; aval += 8;
374d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
375d4002b98SHong Zhang       acolidx += 8; aval += 8;
376d4002b98SHong Zhang     }
377d4002b98SHong Zhang 
378d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
379d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
380d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
381d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
382d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
383ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&y[8*i],mask,vec_y);
384d4002b98SHong Zhang     } else {
385ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&y[8*i],vec_y);
386d4002b98SHong Zhang     }
387d4002b98SHong Zhang   }
3885f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
389a48a6482SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
390a48a6482SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
391a48a6482SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
392a48a6482SHong Zhang 
393a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
394a48a6482SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
395a48a6482SHong Zhang       rows_left = A->rmap->n - 8*i;
396a48a6482SHong Zhang       for (r=0; r<rows_left; ++r) {
397a48a6482SHong Zhang         yval = (MatScalar)0;
398a48a6482SHong Zhang         row = 8*i + r;
399a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
400a48a6482SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
401a48a6482SHong Zhang         y[row] = yval;
402a48a6482SHong Zhang       }
403a48a6482SHong Zhang       break;
404a48a6482SHong Zhang     }
405a48a6482SHong Zhang 
406a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
407a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
408a48a6482SHong Zhang 
409a48a6482SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
410a48a6482SHong Zhang     #pragma novector
411a48a6482SHong Zhang     #pragma unroll(2)
412a48a6482SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
413a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
414a48a6482SHong Zhang       aval += 4; acolidx += 4;
415a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2);
416a48a6482SHong Zhang       aval += 4; acolidx += 4;
417a48a6482SHong Zhang     }
418a48a6482SHong Zhang 
419ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y+i*8,vec_y);
420ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y+i*8+4,vec_y2);
421a48a6482SHong Zhang   }
42221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
423d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
424d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
425d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
426d4002b98SHong Zhang 
427d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
428d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
429d4002b98SHong Zhang 
430d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
431d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
432d4002b98SHong Zhang       rows_left = A->rmap->n - 8*i;
433d4002b98SHong Zhang       for (r=0; r<rows_left; ++r) {
434d4002b98SHong Zhang         yval = (MatScalar)0;
435d4002b98SHong Zhang         row = 8*i + r;
436d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
437d4002b98SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]];
438d4002b98SHong Zhang         y[row] = yval;
439d4002b98SHong Zhang       }
440d4002b98SHong Zhang       break;
441d4002b98SHong Zhang     }
442d4002b98SHong Zhang 
443d4002b98SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
444a48a6482SHong Zhang     #pragma novector
445a48a6482SHong Zhang     #pragma unroll(2)
4467285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
447d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
448d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
449d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
450d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
451d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
452d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
453d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
454d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
455d4002b98SHong Zhang       aval     += 4;
456d4002b98SHong Zhang 
457d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
458d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
459d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
460d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
461d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
462d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
463d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
464d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
465d4002b98SHong Zhang       aval     += 4;
466d4002b98SHong Zhang     }
467d4002b98SHong Zhang 
468d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8,     vec_y);
469d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8 + 4, vec_y2);
470d4002b98SHong Zhang   }
471d4002b98SHong Zhang #else
472d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
473d4002b98SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
474d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
475d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
476d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
477d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
478d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
479d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
480d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
481d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
482d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
483d4002b98SHong Zhang     }
484d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */
485d4002b98SHong Zhang       for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j];
486d4002b98SHong Zhang     } else {
4877285fed1SHong Zhang       for(j=0; j<8; j++) y[8*i+j] = sum[j];
488d4002b98SHong Zhang     }
489d4002b98SHong Zhang   }
490d4002b98SHong Zhang #endif
491d4002b98SHong Zhang 
492d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */
493d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
494d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
495d4002b98SHong Zhang   PetscFunctionReturn(0);
496d4002b98SHong Zhang }
497d4002b98SHong Zhang 
498d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
499d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)
500d4002b98SHong Zhang {
501d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
502d4002b98SHong Zhang   PetscScalar       *y,*z;
503d4002b98SHong Zhang   const PetscScalar *x;
504d4002b98SHong Zhang   const MatScalar   *aval=a->val;
505d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
506d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
507d4002b98SHong Zhang   PetscInt          i,j;
508d4002b98SHong Zhang   PetscErrorCode    ierr;
509d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5107285fed1SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
511d4002b98SHong Zhang   __m256i           vec_idx;
512d4002b98SHong Zhang   __mmask8          mask;
5137285fed1SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
5147285fed1SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
51521cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5167285fed1SHong Zhang   __m128d           vec_x_tmp;
5177285fed1SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
5187285fed1SHong Zhang   MatScalar         yval;
5197285fed1SHong Zhang   PetscInt          r,row,nnz_in_row;
520d4002b98SHong Zhang #else
521d4002b98SHong Zhang   PetscScalar       sum[8];
522d4002b98SHong Zhang #endif
523d4002b98SHong Zhang 
524d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
525d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
526d4002b98SHong Zhang #endif
527d4002b98SHong Zhang 
528d4002b98SHong Zhang   PetscFunctionBegin;
529d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
530d4002b98SHong Zhang   ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
531d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5327285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
5337285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5347285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5357285fed1SHong Zhang 
536d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
537d4002b98SHong Zhang       mask   = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
538ef588d5cSRichard Tran Mills       vec_y  = _mm512_mask_loadu_pd(vec_y,mask,&y[8*i]);
5397285fed1SHong Zhang     } else {
540ef588d5cSRichard Tran Mills       vec_y  = _mm512_loadu_pd(&y[8*i]);
5417285fed1SHong Zhang     }
5427285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5437285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5447285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5457285fed1SHong Zhang 
5467285fed1SHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
5477285fed1SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
5487285fed1SHong Zhang     case 3:
5497285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5507285fed1SHong Zhang       acolidx += 8; aval += 8;
5517285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5527285fed1SHong Zhang       acolidx += 8; aval += 8;
5537285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
5547285fed1SHong Zhang       acolidx += 8; aval += 8;
5557285fed1SHong Zhang       j += 3;
5567285fed1SHong Zhang       break;
5577285fed1SHong Zhang     case 2:
5587285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5597285fed1SHong Zhang       acolidx += 8; aval += 8;
5607285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5617285fed1SHong Zhang       acolidx += 8; aval += 8;
5627285fed1SHong Zhang       j += 2;
5637285fed1SHong Zhang       break;
5647285fed1SHong Zhang     case 1:
5657285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5667285fed1SHong Zhang       acolidx += 8; aval += 8;
5677285fed1SHong Zhang       j += 1;
5687285fed1SHong Zhang       break;
5697285fed1SHong Zhang     }
5707285fed1SHong Zhang     #pragma novector
5717285fed1SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
5727285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5737285fed1SHong Zhang       acolidx += 8; aval += 8;
5747285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5757285fed1SHong Zhang       acolidx += 8; aval += 8;
5767285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
5777285fed1SHong Zhang       acolidx += 8; aval += 8;
5787285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
5797285fed1SHong Zhang       acolidx += 8; aval += 8;
5807285fed1SHong Zhang     }
5817285fed1SHong Zhang 
5827285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
5837285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
5847285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
5857285fed1SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
586ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&z[8*i],mask,vec_y);
587d4002b98SHong Zhang     } else {
588ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&z[8*i],vec_y);
589d4002b98SHong Zhang     }
5907285fed1SHong Zhang   }
59121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5927285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
5937285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5947285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5957285fed1SHong Zhang 
5967285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
5977285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
5987285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
5997285fed1SHong Zhang         row        = 8*i + r;
6007285fed1SHong Zhang         yval       = (MatScalar)0.0;
6017285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6027285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
6037285fed1SHong Zhang         z[row] = y[row] + yval;
6047285fed1SHong Zhang       }
6057285fed1SHong Zhang       break;
6067285fed1SHong Zhang     }
6077285fed1SHong Zhang 
6087285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y+8*i);
6097285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y+8*i+4);
6107285fed1SHong Zhang 
6117285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6127285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
6137285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6147285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6157285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6167285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
6177285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6187285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6197285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
6207285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
6217285fed1SHong Zhang       aval     += 4;
6227285fed1SHong Zhang 
6237285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6247285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6257285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6267285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
6277285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6287285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6297285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
6307285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
6317285fed1SHong Zhang       aval     += 4;
6327285fed1SHong Zhang     }
6337285fed1SHong Zhang 
6347285fed1SHong Zhang     _mm256_storeu_pd(z+i*8,vec_y);
6357285fed1SHong Zhang     _mm256_storeu_pd(z+i*8+4,vec_y2);
6367285fed1SHong Zhang   }
637d4002b98SHong Zhang #else
6387285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
6397285fed1SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
640d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
641d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
642d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
643d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
644d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
645d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
646d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
647d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
648d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
649d4002b98SHong Zhang     }
6507285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6517285fed1SHong Zhang       for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j];
652d4002b98SHong Zhang     } else {
6537285fed1SHong Zhang       for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j];
6547285fed1SHong Zhang     }
655d4002b98SHong Zhang   }
656d4002b98SHong Zhang #endif
657d4002b98SHong Zhang 
658d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
659d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
660d4002b98SHong Zhang   ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
661d4002b98SHong Zhang   PetscFunctionReturn(0);
662d4002b98SHong Zhang }
663d4002b98SHong Zhang 
664d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)
665d4002b98SHong Zhang {
666d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
667d4002b98SHong Zhang   PetscScalar       *y;
668d4002b98SHong Zhang   const PetscScalar *x;
669d4002b98SHong Zhang   const MatScalar   *aval=a->val;
670d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
6717285fed1SHong Zhang   PetscInt          i,j,r,row,nnz_in_row,totalslices=a->totalslices;
672d4002b98SHong Zhang   PetscErrorCode    ierr;
673d4002b98SHong Zhang 
674d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
675d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
676d4002b98SHong Zhang #endif
677d4002b98SHong Zhang 
678d4002b98SHong Zhang   PetscFunctionBegin;
6799fc32365SStefano Zampini   if (A->symmetric) {
6809fc32365SStefano Zampini     ierr = MatMultAdd_SeqSELL(A,xx,zz,yy);CHKERRQ(ierr);
6819fc32365SStefano Zampini     PetscFunctionReturn(0);
6829fc32365SStefano Zampini   }
683d4002b98SHong Zhang   if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); }
684d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
685d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
686d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
6877285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6887285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
6897285fed1SHong Zhang         row        = 8*i + r;
6907285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6917285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row];
6927285fed1SHong Zhang       }
6937285fed1SHong Zhang       break;
6947285fed1SHong Zhang     }
6957285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
6967285fed1SHong Zhang       y[acolidx[j]]   += aval[j] * x[8*i];
6977285fed1SHong Zhang       y[acolidx[j+1]] += aval[j+1] * x[8*i+1];
6987285fed1SHong Zhang       y[acolidx[j+2]] += aval[j+2] * x[8*i+2];
6997285fed1SHong Zhang       y[acolidx[j+3]] += aval[j+3] * x[8*i+3];
7007285fed1SHong Zhang       y[acolidx[j+4]] += aval[j+4] * x[8*i+4];
7017285fed1SHong Zhang       y[acolidx[j+5]] += aval[j+5] * x[8*i+5];
7027285fed1SHong Zhang       y[acolidx[j+6]] += aval[j+6] * x[8*i+6];
7037285fed1SHong Zhang       y[acolidx[j+7]] += aval[j+7] * x[8*i+7];
704d4002b98SHong Zhang     }
705d4002b98SHong Zhang   }
706d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr);
707d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
708d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
709d4002b98SHong Zhang   PetscFunctionReturn(0);
710d4002b98SHong Zhang }
711d4002b98SHong Zhang 
712d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)
713d4002b98SHong Zhang {
714d4002b98SHong Zhang   PetscErrorCode ierr;
715d4002b98SHong Zhang 
716d4002b98SHong Zhang   PetscFunctionBegin;
7179fc32365SStefano Zampini   if (A->symmetric) {
7189fc32365SStefano Zampini     ierr = MatMult_SeqSELL(A,xx,yy);CHKERRQ(ierr);
7199fc32365SStefano Zampini   } else {
720d4002b98SHong Zhang     ierr = VecSet(yy,0.0);CHKERRQ(ierr);
721d4002b98SHong Zhang     ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr);
7229fc32365SStefano Zampini   }
723d4002b98SHong Zhang   PetscFunctionReturn(0);
724d4002b98SHong Zhang }
725d4002b98SHong Zhang 
726d4002b98SHong Zhang /*
727d4002b98SHong Zhang      Checks for missing diagonals
728d4002b98SHong Zhang */
729d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool  *missing,PetscInt *d)
730d4002b98SHong Zhang {
731d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
732d4002b98SHong Zhang   PetscInt       *diag,i;
733994fe344SLisandro Dalcin   PetscErrorCode ierr;
734d4002b98SHong Zhang 
735d4002b98SHong Zhang   PetscFunctionBegin;
736d4002b98SHong Zhang   *missing = PETSC_FALSE;
737d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
738d4002b98SHong Zhang     *missing = PETSC_TRUE;
739d4002b98SHong Zhang     if (d) *d = 0;
740994fe344SLisandro Dalcin     ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr);
741d4002b98SHong Zhang   } else {
742d4002b98SHong Zhang     diag = a->diag;
743d4002b98SHong Zhang     for (i=0; i<A->rmap->n; i++) {
744d4002b98SHong Zhang       if (diag[i] == -1) {
745d4002b98SHong Zhang         *missing = PETSC_TRUE;
746d4002b98SHong Zhang         if (d) *d = i;
747994fe344SLisandro Dalcin         ierr = PetscInfo1(A,"Matrix is missing diagonal number %D\n",i);CHKERRQ(ierr);
748d4002b98SHong Zhang         break;
749d4002b98SHong Zhang       }
750d4002b98SHong Zhang     }
751d4002b98SHong Zhang   }
752d4002b98SHong Zhang   PetscFunctionReturn(0);
753d4002b98SHong Zhang }
754d4002b98SHong Zhang 
755d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
756d4002b98SHong Zhang {
757d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
758d4002b98SHong Zhang   PetscInt       i,j,m=A->rmap->n,shift;
759d4002b98SHong Zhang   PetscErrorCode ierr;
760d4002b98SHong Zhang 
761d4002b98SHong Zhang   PetscFunctionBegin;
762d4002b98SHong Zhang   if (!a->diag) {
763d4002b98SHong Zhang     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
764d4002b98SHong Zhang     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
765d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
766d4002b98SHong Zhang   }
767d4002b98SHong Zhang   for (i=0; i<m; i++) { /* loop over rows */
768d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
769d4002b98SHong Zhang     a->diag[i] = -1;
770d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
771d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
772d4002b98SHong Zhang         a->diag[i] = shift+j*8;
773d4002b98SHong Zhang         break;
774d4002b98SHong Zhang       }
775d4002b98SHong Zhang     }
776d4002b98SHong Zhang   }
777d4002b98SHong Zhang   PetscFunctionReturn(0);
778d4002b98SHong Zhang }
779d4002b98SHong Zhang 
780d4002b98SHong Zhang /*
781d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
782d4002b98SHong Zhang */
783d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)
784d4002b98SHong Zhang {
785d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*) A->data;
786d4002b98SHong Zhang   PetscInt       i,*diag,m = A->rmap->n;
787d4002b98SHong Zhang   MatScalar      *val = a->val;
788d4002b98SHong Zhang   PetscScalar    *idiag,*mdiag;
789d4002b98SHong Zhang   PetscErrorCode ierr;
790d4002b98SHong Zhang 
791d4002b98SHong Zhang   PetscFunctionBegin;
792d4002b98SHong Zhang   if (a->idiagvalid) PetscFunctionReturn(0);
793d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
794d4002b98SHong Zhang   diag = a->diag;
795d4002b98SHong Zhang   if (!a->idiag) {
796d4002b98SHong Zhang     ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr);
797d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr);
798d4002b98SHong Zhang     val  = a->val;
799d4002b98SHong Zhang   }
800d4002b98SHong Zhang   mdiag = a->mdiag;
801d4002b98SHong Zhang   idiag = a->idiag;
802d4002b98SHong Zhang 
803d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
804d4002b98SHong Zhang     for (i=0; i<m; i++) {
805d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
806d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
807d4002b98SHong Zhang         if (PetscRealPart(fshift)) {
808d4002b98SHong Zhang           ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr);
809d4002b98SHong Zhang           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
810d4002b98SHong Zhang           A->factorerror_zeropivot_value = 0.0;
811d4002b98SHong Zhang           A->factorerror_zeropivot_row   = i;
812d4002b98SHong Zhang         } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i);
813d4002b98SHong Zhang       }
814d4002b98SHong Zhang       idiag[i] = 1.0/val[diag[i]];
815d4002b98SHong Zhang     }
816d4002b98SHong Zhang     ierr = PetscLogFlops(m);CHKERRQ(ierr);
817d4002b98SHong Zhang   } else {
818d4002b98SHong Zhang     for (i=0; i<m; i++) {
819d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
820d4002b98SHong Zhang       idiag[i] = omega/(fshift + val[diag[i]]);
821d4002b98SHong Zhang     }
822d4002b98SHong Zhang     ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr);
823d4002b98SHong Zhang   }
824d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
825d4002b98SHong Zhang   PetscFunctionReturn(0);
826d4002b98SHong Zhang }
827d4002b98SHong Zhang 
828d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
829d4002b98SHong Zhang {
830d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
831d4002b98SHong Zhang   PetscErrorCode ierr;
832d4002b98SHong Zhang 
833d4002b98SHong Zhang   PetscFunctionBegin;
834580bdb30SBarry Smith   ierr = PetscArrayzero(a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr);
835d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
836d4002b98SHong Zhang   PetscFunctionReturn(0);
837d4002b98SHong Zhang }
838d4002b98SHong Zhang 
839d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A)
840d4002b98SHong Zhang {
841d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
842d4002b98SHong Zhang   PetscErrorCode ierr;
843d4002b98SHong Zhang 
844d4002b98SHong Zhang   PetscFunctionBegin;
845d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
846d4002b98SHong Zhang   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz);
847d4002b98SHong Zhang #endif
848d4002b98SHong Zhang   ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr);
849d4002b98SHong Zhang   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
850d4002b98SHong Zhang   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
851d4002b98SHong Zhang   ierr = PetscFree(a->diag);CHKERRQ(ierr);
852d4002b98SHong Zhang   ierr = PetscFree(a->rlen);CHKERRQ(ierr);
853d4002b98SHong Zhang   ierr = PetscFree(a->sliidx);CHKERRQ(ierr);
854d4002b98SHong Zhang   ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr);
855d4002b98SHong Zhang   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
856d4002b98SHong Zhang   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
857d4002b98SHong Zhang   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
8586108893eSStefano Zampini   ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr);
859d4002b98SHong Zhang 
860d4002b98SHong Zhang   ierr = PetscFree(A->data);CHKERRQ(ierr);
861d4002b98SHong Zhang 
862d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
863d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
864d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
865d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
866d4002b98SHong Zhang #endif
867d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr);
868d4002b98SHong Zhang   PetscFunctionReturn(0);
869d4002b98SHong Zhang }
870d4002b98SHong Zhang 
871d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)
872d4002b98SHong Zhang {
873d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
874d4002b98SHong Zhang   PetscErrorCode ierr;
875d4002b98SHong Zhang 
876d4002b98SHong Zhang   PetscFunctionBegin;
877d4002b98SHong Zhang   switch (op) {
878d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
879d4002b98SHong Zhang     a->roworiented = flg;
880d4002b98SHong Zhang     break;
881d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
882d4002b98SHong Zhang     a->keepnonzeropattern = flg;
883d4002b98SHong Zhang     break;
884d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
885d4002b98SHong Zhang     a->nonew = (flg ? 0 : 1);
886d4002b98SHong Zhang     break;
887d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
888d4002b98SHong Zhang     a->nonew = (flg ? -1 : 0);
889d4002b98SHong Zhang     break;
890d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
891d4002b98SHong Zhang     a->nonew = (flg ? -2 : 0);
892d4002b98SHong Zhang     break;
893d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
894d4002b98SHong Zhang     a->nounused = (flg ? -1 : 0);
895d4002b98SHong Zhang     break;
896d4002b98SHong Zhang   case MAT_NEW_DIAGONALS:
897d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
898d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
899*071fcb05SBarry Smith   case MAT_SORTED_FULL:
900d4002b98SHong Zhang     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
901d4002b98SHong Zhang     break;
902d4002b98SHong Zhang   case MAT_SPD:
903d4002b98SHong Zhang   case MAT_SYMMETRIC:
904d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
905d4002b98SHong Zhang   case MAT_HERMITIAN:
906d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
907d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
908d4002b98SHong Zhang     break;
909d4002b98SHong Zhang   default:
910d4002b98SHong Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
911d4002b98SHong Zhang   }
912d4002b98SHong Zhang   PetscFunctionReturn(0);
913d4002b98SHong Zhang }
914d4002b98SHong Zhang 
915d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v)
916d4002b98SHong Zhang {
917d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
918d4002b98SHong Zhang   PetscInt       i,j,n,shift;
919d4002b98SHong Zhang   PetscScalar    *x,zero=0.0;
920d4002b98SHong Zhang   PetscErrorCode ierr;
921d4002b98SHong Zhang 
922d4002b98SHong Zhang   PetscFunctionBegin;
923d4002b98SHong Zhang   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
924d4002b98SHong Zhang   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
925d4002b98SHong Zhang 
926d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
927d4002b98SHong Zhang     PetscInt *diag=a->diag;
928d4002b98SHong Zhang     ierr = VecGetArray(v,&x);CHKERRQ(ierr);
929d4002b98SHong Zhang     for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]];
930d4002b98SHong Zhang     ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
931d4002b98SHong Zhang     PetscFunctionReturn(0);
932d4002b98SHong Zhang   }
933d4002b98SHong Zhang 
934d4002b98SHong Zhang   ierr = VecSet(v,zero);CHKERRQ(ierr);
935d4002b98SHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
936d4002b98SHong Zhang   for (i=0; i<n; i++) { /* loop over rows */
937d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
938d4002b98SHong Zhang     x[i] = 0;
939d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
940d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
941d4002b98SHong Zhang         x[i] = a->val[shift+j*8];
942d4002b98SHong Zhang         break;
943d4002b98SHong Zhang       }
944d4002b98SHong Zhang     }
945d4002b98SHong Zhang   }
946d4002b98SHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
947d4002b98SHong Zhang   PetscFunctionReturn(0);
948d4002b98SHong Zhang }
949d4002b98SHong Zhang 
950d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)
951d4002b98SHong Zhang {
952d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
953d4002b98SHong Zhang   const PetscScalar *l,*r;
954d4002b98SHong Zhang   PetscInt          i,j,m,n,row;
955d4002b98SHong Zhang   PetscErrorCode    ierr;
956d4002b98SHong Zhang 
957d4002b98SHong Zhang   PetscFunctionBegin;
958d4002b98SHong Zhang   if (ll) {
959d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
960d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
961d4002b98SHong Zhang     ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr);
962d4002b98SHong Zhang     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length");
963d4002b98SHong Zhang     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
964d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
965d4002b98SHong Zhang       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
966d4002b98SHong Zhang         a->val[j] *= l[8*i+row];
967d4002b98SHong Zhang       }
968d4002b98SHong Zhang     }
969d4002b98SHong Zhang     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
970d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
971d4002b98SHong Zhang   }
972d4002b98SHong Zhang   if (rr) {
973d4002b98SHong Zhang     ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr);
974d4002b98SHong Zhang     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length");
975d4002b98SHong Zhang     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
976d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
977d4002b98SHong Zhang       for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) {
978d4002b98SHong Zhang         a->val[j] *= r[a->colidx[j]];
979d4002b98SHong Zhang       }
980d4002b98SHong Zhang     }
981d4002b98SHong Zhang     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
982d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
983d4002b98SHong Zhang   }
984d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
985d4002b98SHong Zhang   PetscFunctionReturn(0);
986d4002b98SHong Zhang }
987d4002b98SHong Zhang 
988d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
989d4002b98SHong Zhang 
990d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
991d4002b98SHong Zhang {
992d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
993d4002b98SHong Zhang   PetscInt    *cp,i,k,low,high,t,row,col,l;
994d4002b98SHong Zhang   PetscInt    shift;
995d4002b98SHong Zhang   MatScalar   *vp;
996d4002b98SHong Zhang 
997d4002b98SHong Zhang   PetscFunctionBegin;
99868aafef3SStefano Zampini   for (k=0; k<m; k++) { /* loop over requested rows */
999d4002b98SHong Zhang     row = im[k];
1000d4002b98SHong Zhang     if (row<0) continue;
1001d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1002d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1003d4002b98SHong Zhang #endif
1004d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1005d4002b98SHong Zhang     cp = a->colidx+shift; /* pointer to the row */
1006d4002b98SHong Zhang     vp = a->val+shift; /* pointer to the row */
100768aafef3SStefano Zampini     for (l=0; l<n; l++) { /* loop over requested columns */
1008d4002b98SHong Zhang       col = in[l];
1009d4002b98SHong Zhang       if (col<0) continue;
1010d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1011d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1);
1012d4002b98SHong Zhang #endif
1013d4002b98SHong Zhang       high = a->rlen[row]; low = 0; /* assume unsorted */
1014d4002b98SHong Zhang       while (high-low > 5) {
1015d4002b98SHong Zhang         t = (low+high)/2;
1016d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1017d4002b98SHong Zhang         else low = t;
1018d4002b98SHong Zhang       }
1019d4002b98SHong Zhang       for (i=low; i<high; i++) {
1020d4002b98SHong Zhang         if (*(cp+8*i) > col) break;
1021d4002b98SHong Zhang         if (*(cp+8*i) == col) {
1022d4002b98SHong Zhang           *v++ = *(vp+8*i);
1023d4002b98SHong Zhang           goto finished;
1024d4002b98SHong Zhang         }
1025d4002b98SHong Zhang       }
1026d4002b98SHong Zhang       *v++ = 0.0;
1027d4002b98SHong Zhang     finished:;
1028d4002b98SHong Zhang     }
1029d4002b98SHong Zhang   }
1030d4002b98SHong Zhang   PetscFunctionReturn(0);
1031d4002b98SHong Zhang }
1032d4002b98SHong Zhang 
1033d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)
1034d4002b98SHong Zhang {
1035d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1036d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1037d4002b98SHong Zhang   const char        *name;
1038d4002b98SHong Zhang   PetscViewerFormat format;
1039d4002b98SHong Zhang   PetscErrorCode    ierr;
1040d4002b98SHong Zhang 
1041d4002b98SHong Zhang   PetscFunctionBegin;
1042d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1043d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1044d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1045d4002b98SHong Zhang     /*
1046d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
1047d4002b98SHong Zhang       nofinalvalue = 1;
1048d4002b98SHong Zhang     }
1049d4002b98SHong Zhang     */
1050d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1051d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr);
1052d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr);
1053d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1054d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
1055d4002b98SHong Zhang #else
1056d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
1057d4002b98SHong Zhang #endif
1058d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr);
1059d4002b98SHong Zhang 
1060d4002b98SHong Zhang     for (i=0; i<m; i++) {
1061d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1062d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1063d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1064d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1065d4002b98SHong Zhang #else
1066d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1067d4002b98SHong Zhang #endif
1068d4002b98SHong Zhang       }
1069d4002b98SHong Zhang     }
1070d4002b98SHong Zhang     /*
1071d4002b98SHong Zhang     if (nofinalvalue) {
1072d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1073d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr);
1074d4002b98SHong Zhang #else
1075d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr);
1076d4002b98SHong Zhang #endif
1077d4002b98SHong Zhang     }
1078d4002b98SHong Zhang     */
1079d4002b98SHong Zhang     ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1080d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr);
1081d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1082d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
1083d4002b98SHong Zhang     PetscFunctionReturn(0);
1084d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1085d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1086d4002b98SHong Zhang     for (i=0; i<m; i++) {
1087d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1088d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1089d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1090d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1091d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1092d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1093d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1094d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1095d4002b98SHong Zhang         } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) {
1096d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1097d4002b98SHong Zhang         }
1098d4002b98SHong Zhang #else
1099d4002b98SHong Zhang         if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);}
1100d4002b98SHong Zhang #endif
1101d4002b98SHong Zhang       }
1102d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1103d4002b98SHong Zhang     }
1104d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1105d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1106d4002b98SHong Zhang     PetscInt    cnt=0,jcnt;
1107d4002b98SHong Zhang     PetscScalar value;
1108d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1109d4002b98SHong Zhang     PetscBool   realonly=PETSC_TRUE;
1110d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1111d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1112d4002b98SHong Zhang         realonly = PETSC_FALSE;
1113d4002b98SHong Zhang         break;
1114d4002b98SHong Zhang       }
1115d4002b98SHong Zhang     }
1116d4002b98SHong Zhang #endif
1117d4002b98SHong Zhang 
1118d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1119d4002b98SHong Zhang     for (i=0; i<m; i++) {
1120d4002b98SHong Zhang       jcnt = 0;
1121d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1122d4002b98SHong Zhang       for (j=0; j<A->cmap->n; j++) {
1123d4002b98SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) {
1124d4002b98SHong Zhang           value = a->val[cnt++];
1125d4002b98SHong Zhang           jcnt++;
1126d4002b98SHong Zhang         } else {
1127d4002b98SHong Zhang           value = 0.0;
1128d4002b98SHong Zhang         }
1129d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1130d4002b98SHong Zhang         if (realonly) {
1131d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr);
1132d4002b98SHong Zhang         } else {
1133d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr);
1134d4002b98SHong Zhang         }
1135d4002b98SHong Zhang #else
1136d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr);
1137d4002b98SHong Zhang #endif
1138d4002b98SHong Zhang       }
1139d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1140d4002b98SHong Zhang     }
1141d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1142d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1143d4002b98SHong Zhang     PetscInt fshift=1;
1144d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1145d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1146d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr);
1147d4002b98SHong Zhang #else
1148d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr);
1149d4002b98SHong Zhang #endif
1150d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr);
1151d4002b98SHong Zhang     for (i=0; i<m; i++) {
1152d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1153d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1154d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1155d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1156d4002b98SHong Zhang #else
1157d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1158d4002b98SHong Zhang #endif
1159d4002b98SHong Zhang       }
1160d4002b98SHong Zhang     }
1161d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
116268aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
116368aafef3SStefano Zampini     for (i=0; i<a->totalslices; i++) { /* loop over slices */
116468aafef3SStefano Zampini       PetscInt row;
116568aafef3SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"slice %D: %D %D\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr);
116668aafef3SStefano Zampini       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
116768aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
116868aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
116968aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
117068aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
117168aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
117268aafef3SStefano Zampini         } else {
117368aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
117468aafef3SStefano Zampini         }
117568aafef3SStefano Zampini #else
117668aafef3SStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
117768aafef3SStefano Zampini #endif
117868aafef3SStefano Zampini       }
117968aafef3SStefano Zampini     }
1180d4002b98SHong Zhang   } else {
1181d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1182d4002b98SHong Zhang     if (A->factortype) {
1183d4002b98SHong Zhang       for (i=0; i<m; i++) {
1184d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1185d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1186d4002b98SHong Zhang         /* L part */
1187d4002b98SHong Zhang         for (j=shift; j<a->diag[i]; j+=8) {
1188d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1189d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) {
1190d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1191d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) {
1192d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1193d4002b98SHong Zhang           } else {
1194d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1195d4002b98SHong Zhang           }
1196d4002b98SHong Zhang #else
1197d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1198d4002b98SHong Zhang #endif
1199d4002b98SHong Zhang         }
1200d4002b98SHong Zhang         /* diagonal */
1201d4002b98SHong Zhang         j = a->diag[i];
1202d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1203d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
1204d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr);
1205d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1206d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr);
1207d4002b98SHong Zhang         } else {
1208d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr);
1209d4002b98SHong Zhang         }
1210d4002b98SHong Zhang #else
1211d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr);
1212d4002b98SHong Zhang #endif
1213d4002b98SHong Zhang 
1214d4002b98SHong Zhang         /* U part */
1215d4002b98SHong Zhang         for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) {
1216d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1217d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1218d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1219d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1220d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1221d4002b98SHong Zhang           } else {
1222d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1223d4002b98SHong Zhang           }
1224d4002b98SHong Zhang #else
1225d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1226d4002b98SHong Zhang #endif
1227d4002b98SHong Zhang         }
1228d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1229d4002b98SHong Zhang       }
1230d4002b98SHong Zhang     } else {
1231d4002b98SHong Zhang       for (i=0; i<m; i++) {
1232d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1233d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1234d4002b98SHong Zhang         for (j=0; j<a->rlen[i]; j++) {
1235d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1236d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1237d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1238d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1239d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1240d4002b98SHong Zhang           } else {
1241d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1242d4002b98SHong Zhang           }
1243d4002b98SHong Zhang #else
1244d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);
1245d4002b98SHong Zhang #endif
1246d4002b98SHong Zhang         }
1247d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1248d4002b98SHong Zhang       }
1249d4002b98SHong Zhang     }
1250d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1251d4002b98SHong Zhang   }
1252d4002b98SHong Zhang   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
1253d4002b98SHong Zhang   PetscFunctionReturn(0);
1254d4002b98SHong Zhang }
1255d4002b98SHong Zhang 
1256d4002b98SHong Zhang #include <petscdraw.h>
1257d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa)
1258d4002b98SHong Zhang {
1259d4002b98SHong Zhang   Mat               A=(Mat)Aa;
1260d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1261d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1262d4002b98SHong Zhang   int               color;
1263d4002b98SHong Zhang   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1264d4002b98SHong Zhang   PetscViewer       viewer;
1265d4002b98SHong Zhang   PetscViewerFormat format;
1266d4002b98SHong Zhang   PetscErrorCode    ierr;
1267d4002b98SHong Zhang 
1268d4002b98SHong Zhang   PetscFunctionBegin;
1269d4002b98SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1270d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1271d4002b98SHong Zhang   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1272d4002b98SHong Zhang 
1273d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1274d4002b98SHong Zhang 
1275d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1276d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1277d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1278d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1279d4002b98SHong Zhang     for (i=0; i<m; i++) {
1280d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1281d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1282d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1283d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1284d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) >=  0.) continue;
1285d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1286d4002b98SHong Zhang       }
1287d4002b98SHong Zhang     }
1288d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1289d4002b98SHong Zhang     for (i=0; i<m; i++) {
1290d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1291d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1292d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1293d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1294d4002b98SHong Zhang         if (a->val[shift+8*j] !=  0.) continue;
1295d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1296d4002b98SHong Zhang       }
1297d4002b98SHong Zhang     }
1298d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1299d4002b98SHong Zhang     for (i=0; i<m; i++) {
1300d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1301d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1302d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1303d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1304d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) <=  0.) continue;
1305d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1306d4002b98SHong Zhang       }
1307d4002b98SHong Zhang     }
1308d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1309d4002b98SHong Zhang   } else {
1310d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1311d4002b98SHong Zhang     /* first determine max of all nonzero values */
1312d4002b98SHong Zhang     PetscReal minv=0.0,maxv=0.0;
1313d4002b98SHong Zhang     PetscInt  count=0;
1314d4002b98SHong Zhang     PetscDraw popup;
1315d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1316d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1317d4002b98SHong Zhang     }
1318d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1319d4002b98SHong Zhang     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
1320d4002b98SHong Zhang     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1321d4002b98SHong Zhang 
1322d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1323d4002b98SHong Zhang     for (i=0; i<m; i++) {
1324d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1325d4002b98SHong Zhang       y_l = m - i - 1.0;
1326d4002b98SHong Zhang       y_r = y_l + 1.0;
1327d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1328d4002b98SHong Zhang         x_l = a->colidx[shift+j*8];
1329d4002b98SHong Zhang         x_r = x_l + 1.0;
1330d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv);
1331d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1332d4002b98SHong Zhang         count++;
1333d4002b98SHong Zhang       }
1334d4002b98SHong Zhang     }
1335d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1336d4002b98SHong Zhang   }
1337d4002b98SHong Zhang   PetscFunctionReturn(0);
1338d4002b98SHong Zhang }
1339d4002b98SHong Zhang 
1340d4002b98SHong Zhang #include <petscdraw.h>
1341d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)
1342d4002b98SHong Zhang {
1343d4002b98SHong Zhang   PetscDraw      draw;
1344d4002b98SHong Zhang   PetscReal      xr,yr,xl,yl,h,w;
1345d4002b98SHong Zhang   PetscBool      isnull;
1346d4002b98SHong Zhang   PetscErrorCode ierr;
1347d4002b98SHong Zhang 
1348d4002b98SHong Zhang   PetscFunctionBegin;
1349d4002b98SHong Zhang   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1350d4002b98SHong Zhang   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1351d4002b98SHong Zhang   if (isnull) PetscFunctionReturn(0);
1352d4002b98SHong Zhang 
1353d4002b98SHong Zhang   xr   = A->cmap->n; yr  = A->rmap->n; h = yr/10.0; w = xr/10.0;
1354d4002b98SHong Zhang   xr  += w;          yr += h;         xl = -w;     yl = -h;
1355d4002b98SHong Zhang   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1356d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1357d4002b98SHong Zhang   ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr);
1358d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1359d4002b98SHong Zhang   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1360d4002b98SHong Zhang   PetscFunctionReturn(0);
1361d4002b98SHong Zhang }
1362d4002b98SHong Zhang 
1363d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer)
1364d4002b98SHong Zhang {
1365d4002b98SHong Zhang   PetscBool      iascii,isbinary,isdraw;
1366d4002b98SHong Zhang   PetscErrorCode ierr;
1367d4002b98SHong Zhang 
1368d4002b98SHong Zhang   PetscFunctionBegin;
1369d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1370d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1371d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1372d4002b98SHong Zhang   if (iascii) {
1373d4002b98SHong Zhang     ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr);
1374d4002b98SHong Zhang   } else if (isbinary) {
1375d4002b98SHong Zhang     /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */
1376d4002b98SHong Zhang   } else if (isdraw) {
1377d4002b98SHong Zhang     ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr);
1378d4002b98SHong Zhang   }
1379d4002b98SHong Zhang   PetscFunctionReturn(0);
1380d4002b98SHong Zhang }
1381d4002b98SHong Zhang 
1382d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)
1383d4002b98SHong Zhang {
1384d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1385d4002b98SHong Zhang   PetscInt       i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k;
1386d4002b98SHong Zhang   MatScalar      *vp;
1387d4002b98SHong Zhang   PetscErrorCode ierr;
1388d4002b98SHong Zhang 
1389d4002b98SHong Zhang   PetscFunctionBegin;
1390d4002b98SHong Zhang   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1391d4002b98SHong Zhang   /* To do: compress out the unused elements */
1392d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
1393d4002b98SHong Zhang   ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr);
1394d4002b98SHong Zhang   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr);
1395d4002b98SHong Zhang   ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr);
1396d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1397d4002b98SHong Zhang   for (i=0; i<a->totalslices; ++i) {
1398d4002b98SHong Zhang     shift = a->sliidx[i];    /* starting index of the slice */
1399d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the column indices of the slice */
1400d4002b98SHong Zhang     vp    = a->val+shift;    /* pointer to the nonzero values of the slice */
1401d4002b98SHong Zhang     for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */
1402d4002b98SHong Zhang       row  = 8*i + row_in_slice;
1403d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1404d4002b98SHong Zhang       /*
1405d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1406d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1407d4002b98SHong Zhang       */
1408d4002b98SHong Zhang       lastcol = 0;
1409d4002b98SHong Zhang       if (nrow>0) { /* nonempty row */
1410d4002b98SHong Zhang         lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */
1411d4002b98SHong Zhang       } else if (!row_in_slice) { /* first row of the currect slice is empty */
1412d4002b98SHong Zhang         for (j=1;j<8;j++) {
1413d4002b98SHong Zhang           if (a->rlen[8*i+j]) {
1414d4002b98SHong Zhang             lastcol = cp[j];
1415d4002b98SHong Zhang             break;
1416d4002b98SHong Zhang           }
1417d4002b98SHong Zhang         }
1418d4002b98SHong Zhang       } else {
1419d4002b98SHong Zhang         if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */
1420d4002b98SHong Zhang       }
1421d4002b98SHong Zhang 
1422d4002b98SHong Zhang       for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) {
1423d4002b98SHong Zhang         cp[8*k+row_in_slice] = lastcol;
1424d4002b98SHong Zhang         vp[8*k+row_in_slice] = (MatScalar)0;
1425d4002b98SHong Zhang       }
1426d4002b98SHong Zhang     }
1427d4002b98SHong Zhang   }
1428d4002b98SHong Zhang 
1429d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1430d4002b98SHong Zhang   a->reallocs      = 0;
1431d4002b98SHong Zhang 
1432d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1433d4002b98SHong Zhang   PetscFunctionReturn(0);
1434d4002b98SHong Zhang }
1435d4002b98SHong Zhang 
1436d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info)
1437d4002b98SHong Zhang {
1438d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1439d4002b98SHong Zhang 
1440d4002b98SHong Zhang   PetscFunctionBegin;
1441d4002b98SHong Zhang   info->block_size   = 1.0;
1442d4002b98SHong Zhang   info->nz_allocated = (double)a->maxallocmat;
1443d4002b98SHong Zhang   info->nz_used      = (double)a->sliidx[a->totalslices]; /* include padding zeros */
1444d4002b98SHong Zhang   info->nz_unneeded  = (double)(a->maxallocmat-a->sliidx[a->totalslices]);
1445d4002b98SHong Zhang   info->assemblies   = (double)A->num_ass;
1446d4002b98SHong Zhang   info->mallocs      = (double)A->info.mallocs;
1447d4002b98SHong Zhang   info->memory       = ((PetscObject)A)->mem;
1448d4002b98SHong Zhang   if (A->factortype) {
1449d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1450d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1451d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1452d4002b98SHong Zhang   } else {
1453d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1454d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1455d4002b98SHong Zhang     info->factor_mallocs    = 0;
1456d4002b98SHong Zhang   }
1457d4002b98SHong Zhang   PetscFunctionReturn(0);
1458d4002b98SHong Zhang }
1459d4002b98SHong Zhang 
1460d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
1461d4002b98SHong Zhang {
1462d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1463d4002b98SHong Zhang   PetscInt       shift,i,k,l,low,high,t,ii,row,col,nrow;
1464d4002b98SHong Zhang   PetscInt       *cp,nonew=a->nonew,lastcol=-1;
1465d4002b98SHong Zhang   MatScalar      *vp,value;
1466d4002b98SHong Zhang   PetscErrorCode ierr;
1467d4002b98SHong Zhang 
1468d4002b98SHong Zhang   PetscFunctionBegin;
1469d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
1470d4002b98SHong Zhang     row = im[k];
1471d4002b98SHong Zhang     if (row < 0) continue;
1472d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1473d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1474d4002b98SHong Zhang #endif
1475d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1476d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the row */
1477d4002b98SHong Zhang     vp    = a->val+shift; /* pointer to the row */
1478d4002b98SHong Zhang     nrow  = a->rlen[row];
1479d4002b98SHong Zhang     low   = 0;
1480d4002b98SHong Zhang     high  = nrow;
1481d4002b98SHong Zhang 
1482d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
1483d4002b98SHong Zhang       col = in[l];
1484d4002b98SHong Zhang       if (col<0) continue;
1485d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1486d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1);
1487d4002b98SHong Zhang #endif
1488d4002b98SHong Zhang       if (a->roworiented) {
1489d4002b98SHong Zhang         value = v[l+k*n];
1490d4002b98SHong Zhang       } else {
1491d4002b98SHong Zhang         value = v[k+l*m];
1492d4002b98SHong Zhang       }
1493d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1494d4002b98SHong Zhang 
1495d4002b98SHong Zhang       /* search in this row for the specified colmun, i indicates the column to be set */
1496d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1497d4002b98SHong Zhang       else high = nrow;
1498d4002b98SHong Zhang       lastcol = col;
1499d4002b98SHong Zhang       while (high-low > 5) {
1500d4002b98SHong Zhang         t = (low+high)/2;
1501d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1502d4002b98SHong Zhang         else low = t;
1503d4002b98SHong Zhang       }
1504d4002b98SHong Zhang       for (i=low; i<high; i++) {
1505d4002b98SHong Zhang         if (*(cp+i*8) > col) break;
1506d4002b98SHong Zhang         if (*(cp+i*8) == col) {
1507d4002b98SHong Zhang           if (is == ADD_VALUES) *(vp+i*8) += value;
1508d4002b98SHong Zhang           else *(vp+i*8) = value;
1509d4002b98SHong Zhang           low = i + 1;
1510d4002b98SHong Zhang           goto noinsert;
1511d4002b98SHong Zhang         }
1512d4002b98SHong Zhang       }
1513d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1514d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
1515d4002b98SHong Zhang       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1516d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
1517d4002b98SHong Zhang       MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar);
1518d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1519d4002b98SHong Zhang       for (ii=nrow-1; ii>=i; ii--) {
1520d4002b98SHong Zhang         *(cp+(ii+1)*8) = *(cp+ii*8);
1521d4002b98SHong Zhang         *(vp+(ii+1)*8) = *(vp+ii*8);
1522d4002b98SHong Zhang       }
1523d4002b98SHong Zhang       a->rlen[row]++;
1524d4002b98SHong Zhang       *(cp+i*8) = col;
1525d4002b98SHong Zhang       *(vp+i*8) = value;
1526d4002b98SHong Zhang       a->nz++;
1527d4002b98SHong Zhang       A->nonzerostate++;
1528d4002b98SHong Zhang       low = i+1; high++; nrow++;
1529d4002b98SHong Zhang noinsert:;
1530d4002b98SHong Zhang     }
1531d4002b98SHong Zhang     a->rlen[row] = nrow;
1532d4002b98SHong Zhang   }
1533d4002b98SHong Zhang   PetscFunctionReturn(0);
1534d4002b98SHong Zhang }
1535d4002b98SHong Zhang 
1536d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)
1537d4002b98SHong Zhang {
1538d4002b98SHong Zhang   PetscErrorCode ierr;
1539d4002b98SHong Zhang 
1540d4002b98SHong Zhang   PetscFunctionBegin;
1541d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1542d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1543d4002b98SHong Zhang     Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1544d4002b98SHong Zhang     Mat_SeqSELL *b=(Mat_SeqSELL*)B->data;
1545d4002b98SHong Zhang 
1546d4002b98SHong Zhang     if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
1547580bdb30SBarry Smith     ierr = PetscArraycpy(b->val,a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr);
1548d4002b98SHong Zhang   } else {
1549d4002b98SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1550d4002b98SHong Zhang   }
1551d4002b98SHong Zhang   PetscFunctionReturn(0);
1552d4002b98SHong Zhang }
1553d4002b98SHong Zhang 
1554d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A)
1555d4002b98SHong Zhang {
1556d4002b98SHong Zhang   PetscErrorCode ierr;
1557d4002b98SHong Zhang 
1558d4002b98SHong Zhang   PetscFunctionBegin;
1559d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr);
1560d4002b98SHong Zhang   PetscFunctionReturn(0);
1561d4002b98SHong Zhang }
1562d4002b98SHong Zhang 
1563d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[])
1564d4002b98SHong Zhang {
1565d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1566d4002b98SHong Zhang 
1567d4002b98SHong Zhang   PetscFunctionBegin;
1568d4002b98SHong Zhang   *array = a->val;
1569d4002b98SHong Zhang   PetscFunctionReturn(0);
1570d4002b98SHong Zhang }
1571d4002b98SHong Zhang 
1572d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[])
1573d4002b98SHong Zhang {
1574d4002b98SHong Zhang   PetscFunctionBegin;
1575d4002b98SHong Zhang   PetscFunctionReturn(0);
1576d4002b98SHong Zhang }
1577d4002b98SHong Zhang 
1578d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A)
1579d4002b98SHong Zhang {
1580d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1581d4002b98SHong Zhang   PetscInt    i;
1582d4002b98SHong Zhang   MatScalar   *aval=a->val;
1583d4002b98SHong Zhang 
1584d4002b98SHong Zhang   PetscFunctionBegin;
1585d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]);
1586d4002b98SHong Zhang   PetscFunctionReturn(0);
1587d4002b98SHong Zhang }
1588d4002b98SHong Zhang 
1589d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1590d4002b98SHong Zhang {
1591d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1592d4002b98SHong Zhang   PetscInt       i;
1593d4002b98SHong Zhang   MatScalar      *aval=a->val;
1594d4002b98SHong Zhang   PetscErrorCode ierr;
1595d4002b98SHong Zhang 
1596d4002b98SHong Zhang   PetscFunctionBegin;
1597d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
1598d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1599d4002b98SHong Zhang   PetscFunctionReturn(0);
1600d4002b98SHong Zhang }
1601d4002b98SHong Zhang 
1602d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha)
1603d4002b98SHong Zhang {
1604d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)inA->data;
1605d4002b98SHong Zhang   MatScalar      *aval=a->val;
1606d4002b98SHong Zhang   PetscScalar    oalpha=alpha;
1607d4002b98SHong Zhang   PetscBLASInt   one=1,size;
1608d4002b98SHong Zhang   PetscErrorCode ierr;
1609d4002b98SHong Zhang 
1610d4002b98SHong Zhang   PetscFunctionBegin;
1611d4002b98SHong Zhang   ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr);
1612d4002b98SHong Zhang   PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one));
1613d4002b98SHong Zhang   ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1614d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr);
1615d4002b98SHong Zhang   PetscFunctionReturn(0);
1616d4002b98SHong Zhang }
1617d4002b98SHong Zhang 
1618d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a)
1619d4002b98SHong Zhang {
1620d4002b98SHong Zhang   Mat_SeqSELL    *y=(Mat_SeqSELL*)Y->data;
1621d4002b98SHong Zhang   PetscErrorCode ierr;
1622d4002b98SHong Zhang 
1623d4002b98SHong Zhang   PetscFunctionBegin;
1624d4002b98SHong Zhang   if (!Y->preallocated || !y->nz) {
1625d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr);
1626d4002b98SHong Zhang   }
1627d4002b98SHong Zhang   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
1628d4002b98SHong Zhang   PetscFunctionReturn(0);
1629d4002b98SHong Zhang }
1630d4002b98SHong Zhang 
1631d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1632d4002b98SHong Zhang {
1633d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1634d4002b98SHong Zhang   PetscScalar       *x,sum,*t;
1635d4002b98SHong Zhang   const MatScalar   *idiag=0,*mdiag;
1636d4002b98SHong Zhang   const PetscScalar *b,*xb;
1637d4002b98SHong Zhang   PetscInt          n,m=A->rmap->n,i,j,shift;
1638d4002b98SHong Zhang   const PetscInt    *diag;
1639d4002b98SHong Zhang   PetscErrorCode    ierr;
1640d4002b98SHong Zhang 
1641d4002b98SHong Zhang   PetscFunctionBegin;
1642d4002b98SHong Zhang   its = its*lits;
1643d4002b98SHong Zhang 
1644d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
1645d4002b98SHong Zhang   if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);}
1646d4002b98SHong Zhang   a->fshift = fshift;
1647d4002b98SHong Zhang   a->omega  = omega;
1648d4002b98SHong Zhang 
1649d4002b98SHong Zhang   diag  = a->diag;
1650d4002b98SHong Zhang   t     = a->ssor_work;
1651d4002b98SHong Zhang   idiag = a->idiag;
1652d4002b98SHong Zhang   mdiag = a->mdiag;
1653d4002b98SHong Zhang 
1654d4002b98SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1655d4002b98SHong Zhang   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1656d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
1657d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented");
1658d4002b98SHong Zhang   if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented");
1659d4002b98SHong Zhang   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
1660d4002b98SHong Zhang 
1661d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1662d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1663d4002b98SHong Zhang       for (i=0; i<m; i++) {
1664d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1665d4002b98SHong Zhang         sum   = b[i];
1666d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1667d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1668d4002b98SHong Zhang         t[i]  = sum;
1669d4002b98SHong Zhang         x[i]  = sum*idiag[i];
1670d4002b98SHong Zhang       }
1671d4002b98SHong Zhang       xb   = t;
1672d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1673d4002b98SHong Zhang     } else xb = b;
1674d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1675d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1676d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1677d4002b98SHong Zhang         sum   = xb[i];
1678d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1679d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1680d4002b98SHong Zhang         if (xb == b) {
1681d4002b98SHong Zhang           x[i] = sum*idiag[i];
1682d4002b98SHong Zhang         } else {
1683d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1684d4002b98SHong Zhang         }
1685d4002b98SHong Zhang       }
1686d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1687d4002b98SHong Zhang     }
1688d4002b98SHong Zhang     its--;
1689d4002b98SHong Zhang   }
1690d4002b98SHong Zhang   while (its--) {
1691d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1692d4002b98SHong Zhang       for (i=0; i<m; i++) {
1693d4002b98SHong Zhang         /* lower */
1694d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1695d4002b98SHong Zhang         sum   = b[i];
1696d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1697d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1698d4002b98SHong Zhang         t[i]  = sum;             /* save application of the lower-triangular part */
1699d4002b98SHong Zhang         /* upper */
1700d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1701d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1702d4002b98SHong Zhang         x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1703d4002b98SHong Zhang       }
1704d4002b98SHong Zhang       xb   = t;
1705d4002b98SHong Zhang       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1706d4002b98SHong Zhang     } else xb = b;
1707d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1708d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1709d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1710d4002b98SHong Zhang         sum = xb[i];
1711d4002b98SHong Zhang         if (xb == b) {
1712d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1713d4002b98SHong Zhang           n     = a->rlen[i];
1714d4002b98SHong Zhang           for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1715d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i];
1716d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
1717d4002b98SHong Zhang           n     = a->rlen[i]-(diag[i]-shift)/8-1;
1718d4002b98SHong Zhang           for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1719d4002b98SHong Zhang           x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1720d4002b98SHong Zhang         }
1721d4002b98SHong Zhang       }
1722d4002b98SHong Zhang       if (xb == b) {
1723d4002b98SHong Zhang         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1724d4002b98SHong Zhang       } else {
1725d4002b98SHong Zhang         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1726d4002b98SHong Zhang       }
1727d4002b98SHong Zhang     }
1728d4002b98SHong Zhang   }
1729d4002b98SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1730d4002b98SHong Zhang   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1731d4002b98SHong Zhang   PetscFunctionReturn(0);
1732d4002b98SHong Zhang }
1733d4002b98SHong Zhang 
1734d4002b98SHong Zhang /* -------------------------------------------------------------------*/
1735d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17366108893eSStefano Zampini                                        MatGetRow_SeqSELL,
17376108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1738d4002b98SHong Zhang                                        MatMult_SeqSELL,
1739d4002b98SHong Zhang                                /* 4*/  MatMultAdd_SeqSELL,
1740d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1741d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1742d4002b98SHong Zhang                                        0,
1743d4002b98SHong Zhang                                        0,
1744d4002b98SHong Zhang                                        0,
1745d4002b98SHong Zhang                                /* 10*/ 0,
1746d4002b98SHong Zhang                                        0,
1747d4002b98SHong Zhang                                        0,
1748d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1749d4002b98SHong Zhang                                        0,
1750d4002b98SHong Zhang                                /* 15*/ MatGetInfo_SeqSELL,
1751d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1752d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1753d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1754d4002b98SHong Zhang                                        0,
1755d4002b98SHong Zhang                                /* 20*/ 0,
1756d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1757d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1758d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1759d4002b98SHong Zhang                                /* 24*/ 0,
1760d4002b98SHong Zhang                                        0,
1761d4002b98SHong Zhang                                        0,
1762d4002b98SHong Zhang                                        0,
1763d4002b98SHong Zhang                                        0,
1764d4002b98SHong Zhang                                /* 29*/ MatSetUp_SeqSELL,
1765d4002b98SHong Zhang                                        0,
1766d4002b98SHong Zhang                                        0,
1767d4002b98SHong Zhang                                        0,
1768d4002b98SHong Zhang                                        0,
1769d4002b98SHong Zhang                                /* 34*/ MatDuplicate_SeqSELL,
1770d4002b98SHong Zhang                                        0,
1771d4002b98SHong Zhang                                        0,
1772d4002b98SHong Zhang                                        0,
1773d4002b98SHong Zhang                                        0,
1774d4002b98SHong Zhang                                /* 39*/ 0,
1775d4002b98SHong Zhang                                        0,
1776d4002b98SHong Zhang                                        0,
1777d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1778d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1779d4002b98SHong Zhang                                /* 44*/ 0,
1780d4002b98SHong Zhang                                        MatScale_SeqSELL,
1781d4002b98SHong Zhang                                        MatShift_SeqSELL,
1782d4002b98SHong Zhang                                        0,
1783d4002b98SHong Zhang                                        0,
1784d4002b98SHong Zhang                                /* 49*/ 0,
1785d4002b98SHong Zhang                                        0,
1786d4002b98SHong Zhang                                        0,
1787d4002b98SHong Zhang                                        0,
1788d4002b98SHong Zhang                                        0,
1789d4002b98SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
1790d4002b98SHong Zhang                                        0,
1791d4002b98SHong Zhang                                        0,
1792d4002b98SHong Zhang                                        0,
1793d4002b98SHong Zhang                                        0,
1794d4002b98SHong Zhang                                /* 59*/ 0,
1795d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1796d4002b98SHong Zhang                                        MatView_SeqSELL,
1797d4002b98SHong Zhang                                        0,
1798d4002b98SHong Zhang                                        0,
1799d4002b98SHong Zhang                                /* 64*/ 0,
1800d4002b98SHong Zhang                                        0,
1801d4002b98SHong Zhang                                        0,
1802d4002b98SHong Zhang                                        0,
1803d4002b98SHong Zhang                                        0,
1804d4002b98SHong Zhang                                /* 69*/ 0,
1805d4002b98SHong Zhang                                        0,
1806d4002b98SHong Zhang                                        0,
1807d4002b98SHong Zhang                                        0,
1808d4002b98SHong Zhang                                        0,
1809d4002b98SHong Zhang                                /* 74*/ 0,
1810d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1811d4002b98SHong Zhang                                        0,
1812d4002b98SHong Zhang                                        0,
1813d4002b98SHong Zhang                                        0,
1814d4002b98SHong Zhang                                /* 79*/ 0,
1815d4002b98SHong Zhang                                        0,
1816d4002b98SHong Zhang                                        0,
1817d4002b98SHong Zhang                                        0,
1818d4002b98SHong Zhang                                        0,
1819d4002b98SHong Zhang                                /* 84*/ 0,
1820d4002b98SHong Zhang                                        0,
1821d4002b98SHong Zhang                                        0,
1822d4002b98SHong Zhang                                        0,
1823d4002b98SHong Zhang                                        0,
1824d4002b98SHong Zhang                                /* 89*/ 0,
1825d4002b98SHong Zhang                                        0,
1826d4002b98SHong Zhang                                        0,
1827d4002b98SHong Zhang                                        0,
1828d4002b98SHong Zhang                                        0,
1829d4002b98SHong Zhang                                /* 94*/ 0,
1830d4002b98SHong Zhang                                        0,
1831d4002b98SHong Zhang                                        0,
1832d4002b98SHong Zhang                                        0,
1833d4002b98SHong Zhang                                        0,
1834d4002b98SHong Zhang                                /* 99*/ 0,
1835d4002b98SHong Zhang                                        0,
1836d4002b98SHong Zhang                                        0,
1837d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1838d4002b98SHong Zhang                                        0,
1839d4002b98SHong Zhang                                /*104*/ 0,
1840d4002b98SHong Zhang                                        0,
1841d4002b98SHong Zhang                                        0,
1842d4002b98SHong Zhang                                        0,
1843d4002b98SHong Zhang                                        0,
1844d4002b98SHong Zhang                                /*109*/ 0,
1845d4002b98SHong Zhang                                        0,
1846d4002b98SHong Zhang                                        0,
1847d4002b98SHong Zhang                                        0,
1848d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1849d4002b98SHong Zhang                                /*114*/ 0,
1850d4002b98SHong Zhang                                        0,
1851d4002b98SHong Zhang                                        0,
1852d4002b98SHong Zhang                                        0,
1853d4002b98SHong Zhang                                        0,
1854d4002b98SHong Zhang                                /*119*/ 0,
1855d4002b98SHong Zhang                                        0,
1856d4002b98SHong Zhang                                        0,
1857d4002b98SHong Zhang                                        0,
1858d4002b98SHong Zhang                                        0,
1859d4002b98SHong Zhang                                /*124*/ 0,
1860d4002b98SHong Zhang                                        0,
1861d4002b98SHong Zhang                                        0,
1862d4002b98SHong Zhang                                        0,
1863d4002b98SHong Zhang                                        0,
1864d4002b98SHong Zhang                                /*129*/ 0,
1865d4002b98SHong Zhang                                        0,
1866d4002b98SHong Zhang                                        0,
1867d4002b98SHong Zhang                                        0,
1868d4002b98SHong Zhang                                        0,
1869d4002b98SHong Zhang                                /*134*/ 0,
1870d4002b98SHong Zhang                                        0,
1871d4002b98SHong Zhang                                        0,
1872d4002b98SHong Zhang                                        0,
1873d4002b98SHong Zhang                                        0,
1874d4002b98SHong Zhang                                /*139*/ 0,
1875d4002b98SHong Zhang                                        0,
1876d4002b98SHong Zhang                                        0,
1877d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1878d4002b98SHong Zhang                                        0,
1879d4002b98SHong Zhang                                 /*144*/0
1880d4002b98SHong Zhang };
1881d4002b98SHong Zhang 
1882d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1883d4002b98SHong Zhang {
1884d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1885d4002b98SHong Zhang   PetscErrorCode ierr;
1886d4002b98SHong Zhang 
1887d4002b98SHong Zhang   PetscFunctionBegin;
1888d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1889d4002b98SHong Zhang 
1890d4002b98SHong Zhang   /* allocate space for values if not already there */
1891d4002b98SHong Zhang   if (!a->saved_values) {
1892d4002b98SHong Zhang     ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr);
1893d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr);
1894d4002b98SHong Zhang   }
1895d4002b98SHong Zhang 
1896d4002b98SHong Zhang   /* copy values over */
1897580bdb30SBarry Smith   ierr = PetscArraycpy(a->saved_values,a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr);
1898d4002b98SHong Zhang   PetscFunctionReturn(0);
1899d4002b98SHong Zhang }
1900d4002b98SHong Zhang 
1901d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1902d4002b98SHong Zhang {
1903d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1904d4002b98SHong Zhang   PetscErrorCode ierr;
1905d4002b98SHong Zhang 
1906d4002b98SHong Zhang   PetscFunctionBegin;
1907d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1908d4002b98SHong Zhang   if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
1909580bdb30SBarry Smith   ierr = PetscArraycpy(a->val,a->saved_values,a->sliidx[a->totalslices]);CHKERRQ(ierr);
1910d4002b98SHong Zhang   PetscFunctionReturn(0);
1911d4002b98SHong Zhang }
1912d4002b98SHong Zhang 
1913d4002b98SHong Zhang /*@C
1914d4002b98SHong Zhang  MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray()
1915d4002b98SHong Zhang 
1916d4002b98SHong Zhang  Not Collective
1917d4002b98SHong Zhang 
1918d4002b98SHong Zhang  Input Parameters:
1919d4002b98SHong Zhang  .  mat - a MATSEQSELL matrix
1920d4002b98SHong Zhang  .  array - pointer to the data
1921d4002b98SHong Zhang 
1922d4002b98SHong Zhang  Level: intermediate
1923d4002b98SHong Zhang 
1924d4002b98SHong Zhang  .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90()
1925d4002b98SHong Zhang  @*/
1926d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array)
1927d4002b98SHong Zhang {
1928d4002b98SHong Zhang   PetscErrorCode ierr;
1929d4002b98SHong Zhang 
1930d4002b98SHong Zhang   PetscFunctionBegin;
1931d4002b98SHong Zhang   ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
1932d4002b98SHong Zhang   PetscFunctionReturn(0);
1933d4002b98SHong Zhang }
1934d4002b98SHong Zhang 
1935d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
1936d4002b98SHong Zhang {
1937d4002b98SHong Zhang   Mat_SeqSELL    *b;
1938d4002b98SHong Zhang   PetscMPIInt    size;
1939d4002b98SHong Zhang   PetscErrorCode ierr;
1940d4002b98SHong Zhang 
1941d4002b98SHong Zhang   PetscFunctionBegin;
1942d4002b98SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1943d4002b98SHong Zhang   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1");
1944d4002b98SHong Zhang 
1945d4002b98SHong Zhang   ierr = PetscNewLog(B,&b);CHKERRQ(ierr);
1946d4002b98SHong Zhang 
1947d4002b98SHong Zhang   B->data = (void*)b;
1948d4002b98SHong Zhang 
1949d4002b98SHong Zhang   ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1950d4002b98SHong Zhang 
1951d4002b98SHong Zhang   b->row                = 0;
1952d4002b98SHong Zhang   b->col                = 0;
1953d4002b98SHong Zhang   b->icol               = 0;
1954d4002b98SHong Zhang   b->reallocs           = 0;
1955d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
1956d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
1957d4002b98SHong Zhang   b->nonew              = 0;
1958d4002b98SHong Zhang   b->diag               = 0;
1959d4002b98SHong Zhang   b->solve_work         = 0;
1960d4002b98SHong Zhang   B->spptr              = 0;
1961d4002b98SHong Zhang   b->saved_values       = 0;
1962d4002b98SHong Zhang   b->idiag              = 0;
1963d4002b98SHong Zhang   b->mdiag              = 0;
1964d4002b98SHong Zhang   b->ssor_work          = 0;
1965d4002b98SHong Zhang   b->omega              = 1.0;
1966d4002b98SHong Zhang   b->fshift             = 0.0;
1967d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
1968d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
1969d4002b98SHong Zhang 
1970d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr);
1971d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr);
1972d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr);
1973d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr);
1974d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr);
1975d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr);
1976d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr);
1977d4002b98SHong Zhang   PetscFunctionReturn(0);
1978d4002b98SHong Zhang }
1979d4002b98SHong Zhang 
1980d4002b98SHong Zhang /*
1981d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
1982d4002b98SHong Zhang  */
1983d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
1984d4002b98SHong Zhang {
1985d4002b98SHong Zhang   Mat_SeqSELL    *c,*a=(Mat_SeqSELL*)A->data;
1986d4002b98SHong Zhang   PetscInt       i,m=A->rmap->n;
1987d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
1988d4002b98SHong Zhang   PetscErrorCode ierr;
1989d4002b98SHong Zhang 
1990d4002b98SHong Zhang   PetscFunctionBegin;
1991d4002b98SHong Zhang   c = (Mat_SeqSELL*)C->data;
1992d4002b98SHong Zhang 
1993d4002b98SHong Zhang   C->factortype = A->factortype;
1994d4002b98SHong Zhang   c->row        = 0;
1995d4002b98SHong Zhang   c->col        = 0;
1996d4002b98SHong Zhang   c->icol       = 0;
1997d4002b98SHong Zhang   c->reallocs   = 0;
1998d4002b98SHong Zhang 
1999d4002b98SHong Zhang   C->assembled = PETSC_TRUE;
2000d4002b98SHong Zhang 
2001d4002b98SHong Zhang   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
2002d4002b98SHong Zhang   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
2003d4002b98SHong Zhang 
2004d4002b98SHong Zhang   ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr);
2005d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
2006d4002b98SHong Zhang   ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr);
2007d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
2008d4002b98SHong Zhang 
2009d4002b98SHong Zhang   for (i=0; i<m; i++) c->rlen[i] = a->rlen[i];
2010d4002b98SHong Zhang   for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i];
2011d4002b98SHong Zhang 
2012d4002b98SHong Zhang   /* allocate the matrix space */
2013d4002b98SHong Zhang   if (mallocmatspace) {
2014d4002b98SHong Zhang     ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr);
2015d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2016d4002b98SHong Zhang 
2017d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2018d4002b98SHong Zhang 
2019d4002b98SHong Zhang     if (m > 0) {
2020580bdb30SBarry Smith       ierr = PetscArraycpy(c->colidx,a->colidx,a->maxallocmat);CHKERRQ(ierr);
2021d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
2022580bdb30SBarry Smith         ierr = PetscArraycpy(c->val,a->val,a->maxallocmat);CHKERRQ(ierr);
2023d4002b98SHong Zhang       } else {
2024580bdb30SBarry Smith         ierr = PetscArrayzero(c->val,a->maxallocmat);CHKERRQ(ierr);
2025d4002b98SHong Zhang       }
2026d4002b98SHong Zhang     }
2027d4002b98SHong Zhang   }
2028d4002b98SHong Zhang 
2029d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
2030d4002b98SHong Zhang   c->roworiented       = a->roworiented;
2031d4002b98SHong Zhang   c->nonew             = a->nonew;
2032d4002b98SHong Zhang   if (a->diag) {
2033d4002b98SHong Zhang     ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr);
2034d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
2035d4002b98SHong Zhang     for (i=0; i<m; i++) {
2036d4002b98SHong Zhang       c->diag[i] = a->diag[i];
2037d4002b98SHong Zhang     }
2038d4002b98SHong Zhang   } else c->diag = 0;
2039d4002b98SHong Zhang 
2040d4002b98SHong Zhang   c->solve_work         = 0;
2041d4002b98SHong Zhang   c->saved_values       = 0;
2042d4002b98SHong Zhang   c->idiag              = 0;
2043d4002b98SHong Zhang   c->ssor_work          = 0;
2044d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2045d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2046d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2047d4002b98SHong Zhang 
2048d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2049d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2050d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2051d4002b98SHong Zhang   c->nz           = a->nz;
2052d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2053d4002b98SHong Zhang 
2054d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2055d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2056d4002b98SHong Zhang 
2057d4002b98SHong Zhang   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
2058d4002b98SHong Zhang   PetscFunctionReturn(0);
2059d4002b98SHong Zhang }
2060d4002b98SHong Zhang 
2061d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B)
2062d4002b98SHong Zhang {
2063d4002b98SHong Zhang   PetscErrorCode ierr;
2064d4002b98SHong Zhang 
2065d4002b98SHong Zhang   PetscFunctionBegin;
2066d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
2067d4002b98SHong Zhang   ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
2068d4002b98SHong Zhang   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) {
2069d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr);
2070d4002b98SHong Zhang   }
2071d4002b98SHong Zhang   ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr);
2072d4002b98SHong Zhang   ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
2073d4002b98SHong Zhang   PetscFunctionReturn(0);
2074d4002b98SHong Zhang }
2075d4002b98SHong Zhang 
2076d4002b98SHong Zhang /*@C
2077d4002b98SHong Zhang  MatCreateSeqSELL - Creates a sparse matrix in SELL format.
2078d4002b98SHong Zhang 
2079d083f849SBarry Smith  Collective
2080d4002b98SHong Zhang 
2081d4002b98SHong Zhang  Input Parameters:
2082d4002b98SHong Zhang  +  comm - MPI communicator, set to PETSC_COMM_SELF
2083d4002b98SHong Zhang  .  m - number of rows
2084d4002b98SHong Zhang  .  n - number of columns
2085d4002b98SHong Zhang  .  rlenmax - maximum number of nonzeros in a row
2086d4002b98SHong Zhang  -  rlen - array containing the number of nonzeros in the various rows
2087d4002b98SHong Zhang  (possibly different for each row) or NULL
2088d4002b98SHong Zhang 
2089d4002b98SHong Zhang  Output Parameter:
2090d4002b98SHong Zhang  .  A - the matrix
2091d4002b98SHong Zhang 
2092d4002b98SHong Zhang  It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2093f6f02116SRichard Tran Mills  MatXXXXSetPreallocation() paradigm instead of this routine directly.
2094d4002b98SHong Zhang  [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
2095d4002b98SHong Zhang 
2096d4002b98SHong Zhang  Notes:
2097d4002b98SHong Zhang  If nnz is given then nz is ignored
2098d4002b98SHong Zhang 
2099d4002b98SHong Zhang  Specify the preallocated storage with either rlenmax or rlen (not both).
2100d4002b98SHong Zhang  Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory
2101d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
2102d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
2103d4002b98SHong Zhang 
2104d4002b98SHong Zhang  Level: intermediate
2105d4002b98SHong Zhang 
2106d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays()
2107d4002b98SHong Zhang 
2108d4002b98SHong Zhang  @*/
2109d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A)
2110d4002b98SHong Zhang {
2111d4002b98SHong Zhang   PetscErrorCode ierr;
2112d4002b98SHong Zhang 
2113d4002b98SHong Zhang   PetscFunctionBegin;
2114d4002b98SHong Zhang   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2115d4002b98SHong Zhang   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2116d4002b98SHong Zhang   ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr);
2117d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr);
2118d4002b98SHong Zhang   PetscFunctionReturn(0);
2119d4002b98SHong Zhang }
2120d4002b98SHong Zhang 
2121d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)
2122d4002b98SHong Zhang {
2123d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data;
2124d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
2125d4002b98SHong Zhang   PetscErrorCode ierr;
2126d4002b98SHong Zhang 
2127d4002b98SHong Zhang   PetscFunctionBegin;
2128d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2129d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2130d4002b98SHong Zhang     *flg = PETSC_FALSE;
2131d4002b98SHong Zhang     PetscFunctionReturn(0);
2132d4002b98SHong Zhang   }
2133d4002b98SHong Zhang   /* if the a->colidx are the same */
2134580bdb30SBarry Smith   ierr = PetscArraycmp(a->colidx,b->colidx,a->sliidx[totalslices],flg);CHKERRQ(ierr);
2135d4002b98SHong Zhang   if (!*flg) PetscFunctionReturn(0);
2136d4002b98SHong Zhang   /* if a->val are the same */
2137580bdb30SBarry Smith   ierr = PetscArraycmp(a->val,b->val,a->sliidx[totalslices],flg);CHKERRQ(ierr);
2138d4002b98SHong Zhang   PetscFunctionReturn(0);
2139d4002b98SHong Zhang }
2140d4002b98SHong Zhang 
2141d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2142d4002b98SHong Zhang {
2143d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2144d4002b98SHong Zhang 
2145d4002b98SHong Zhang   PetscFunctionBegin;
2146d4002b98SHong Zhang   a->idiagvalid  = PETSC_FALSE;
2147d4002b98SHong Zhang   PetscFunctionReturn(0);
2148d4002b98SHong Zhang }
2149d4002b98SHong Zhang 
2150d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A)
2151d4002b98SHong Zhang {
2152d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2153d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2154d4002b98SHong Zhang   PetscInt    i;
2155d4002b98SHong Zhang   PetscScalar *val = a->val;
2156d4002b98SHong Zhang 
2157d4002b98SHong Zhang   PetscFunctionBegin;
2158d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) {
2159d4002b98SHong Zhang     val[i] = PetscConj(val[i]);
2160d4002b98SHong Zhang   }
2161d4002b98SHong Zhang #else
2162d4002b98SHong Zhang   PetscFunctionBegin;
2163d4002b98SHong Zhang #endif
2164d4002b98SHong Zhang   PetscFunctionReturn(0);
2165d4002b98SHong Zhang }
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