1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8ed73aabaSBarry Smith 9ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE; 109371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n" 11ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n" 12ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n" 13ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n" 14ed73aabaSBarry Smith " year = 2018\n" 15ed73aabaSBarry Smith "}\n"; 16ed73aabaSBarry Smith 175f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 184243e2ceSHong Zhang 19d4002b98SHong Zhang #include <immintrin.h> 20d4002b98SHong Zhang 21d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 22d4002b98SHong Zhang #define _MM_SCALE_8 8 23d4002b98SHong Zhang #endif 24d4002b98SHong Zhang 25d4002b98SHong Zhang #if defined(__AVX512F__) 26d4002b98SHong Zhang /* these do not work 27d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 28d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 29d4002b98SHong Zhang */ 30d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \ 31d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 32ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const *)acolidx); \ 33ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 34d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \ 35a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x, vec_vals, vec_y) 365f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 37a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \ 38ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 39ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \ 40a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \ 41a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x, vec_vals, vec_y) 42d4002b98SHong Zhang #endif 43d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 44d4002b98SHong Zhang 45d4002b98SHong Zhang /*@C 46d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 4720f4b53cSBarry Smith the user should preallocate the matrix storage by setting the parameter `nz` 4820f4b53cSBarry Smith (or the array `nnz`). 49d4002b98SHong Zhang 50d083f849SBarry Smith Collective 51d4002b98SHong Zhang 52d4002b98SHong Zhang Input Parameters: 5311a5261eSBarry Smith + B - The `MATSEQSELL` matrix 5420f4b53cSBarry Smith . rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided 5520f4b53cSBarry Smith - rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL` 5667be906fSBarry Smith 5767be906fSBarry Smith Level: intermediate 58d4002b98SHong Zhang 59d4002b98SHong Zhang Notes: 6067be906fSBarry Smith Specify the preallocated storage with either `rlenmax` or `rlen` (not both). 6167be906fSBarry Smith Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory 6220f4b53cSBarry Smith allocation. 63d4002b98SHong Zhang 6411a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 65d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 6667be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 67d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 68d4002b98SHong Zhang 6927430b45SBarry Smith Developer Note: 7067be906fSBarry Smith Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix 71d4002b98SHong Zhang entries or columns indices. 72d4002b98SHong Zhang 73c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 74c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 7567be906fSBarry Smith (`MatSeqXSELLReallocateSELL()`). 76d4002b98SHong Zhang 7767be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()` 78d4002b98SHong Zhang @*/ 79d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[]) 80d71ae5a4SJacob Faibussowitsch { 81d4002b98SHong Zhang PetscFunctionBegin; 82d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 83d4002b98SHong Zhang PetscValidType(B, 1); 84cac4c232SBarry Smith PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen)); 853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86d4002b98SHong Zhang } 87d4002b98SHong Zhang 88d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[]) 89d71ae5a4SJacob Faibussowitsch { 90d4002b98SHong Zhang Mat_SeqSELL *b; 91d4002b98SHong Zhang PetscInt i, j, totalslices; 92d4002b98SHong Zhang PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE; 93d4002b98SHong Zhang 94d4002b98SHong Zhang PetscFunctionBegin; 95d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 96d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 97d4002b98SHong Zhang skipallocation = PETSC_TRUE; 98d4002b98SHong Zhang maxallocrow = 0; 99d4002b98SHong Zhang } 100d4002b98SHong Zhang 1019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 103d4002b98SHong Zhang 104d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 105d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 10608401ef6SPierre Jolivet PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow); 107d4002b98SHong Zhang if (rlen) { 108d4002b98SHong Zhang for (i = 0; i < B->rmap->n; i++) { 10908401ef6SPierre Jolivet PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]); 11008401ef6SPierre Jolivet PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n); 111d4002b98SHong Zhang } 112d4002b98SHong Zhang } 113d4002b98SHong Zhang 114d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 115d4002b98SHong Zhang 116d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 117d4002b98SHong Zhang 118*07e43b41SHong Zhang if (!b->sliceheight) { /* not set yet */ 119*07e43b41SHong Zhang #if defined(PETSC_HAVE_CUDA) 120*07e43b41SHong Zhang b->sliceheight = 16; 121*07e43b41SHong Zhang #else 122*07e43b41SHong Zhang b->sliceheight = 8; 123*07e43b41SHong Zhang #endif 124*07e43b41SHong Zhang } 125*07e43b41SHong Zhang totalslices = PetscCeilInt(B->rmap->n, b->sliceheight); 126d4002b98SHong Zhang b->totalslices = totalslices; 127d4002b98SHong Zhang if (!skipallocation) { 128*07e43b41SHong Zhang if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n)); 129d4002b98SHong Zhang 130d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 1319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx)); 132d4002b98SHong Zhang } 133d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 134d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 135d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 136*07e43b41SHong Zhang for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow; 137d4002b98SHong Zhang } else { 138d4002b98SHong Zhang maxallocrow = 0; 139d4002b98SHong Zhang b->sliidx[0] = 0; 140d4002b98SHong Zhang for (i = 1; i < totalslices; i++) { 141d4002b98SHong Zhang b->sliidx[i] = 0; 142*07e43b41SHong Zhang for (j = 0; j < b->sliceheight; j++) { b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]); } 143d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i], maxallocrow); 144*07e43b41SHong Zhang PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i])); 145d4002b98SHong Zhang } 146d4002b98SHong Zhang /* last slice */ 147d4002b98SHong Zhang b->sliidx[totalslices] = 0; 148*07e43b41SHong Zhang for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]); 149d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices], maxallocrow); 150*07e43b41SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices]; 151d4002b98SHong Zhang } 152d4002b98SHong Zhang 153d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 154d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 1559566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx)); 156d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 1579566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx)); 158d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 159*07e43b41SHong Zhang PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen)); 160d4002b98SHong Zhang 161d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 162d4002b98SHong Zhang b->free_val = PETSC_TRUE; 163d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 164d4002b98SHong Zhang } else { 165d4002b98SHong Zhang b->free_val = PETSC_FALSE; 166d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 167d4002b98SHong Zhang } 168d4002b98SHong Zhang 169d4002b98SHong Zhang b->nz = 0; 170d4002b98SHong Zhang b->maxallocrow = maxallocrow; 171d4002b98SHong Zhang b->rlenmax = maxallocrow; 172d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 173d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 1741baa6e33SBarry Smith if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 176d4002b98SHong Zhang } 177d4002b98SHong Zhang 178d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 179d71ae5a4SJacob Faibussowitsch { 1806108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1816108893eSStefano Zampini PetscInt shift; 1826108893eSStefano Zampini 1836108893eSStefano Zampini PetscFunctionBegin; 184aed4548fSBarry Smith PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row); 1856108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 186*07e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); 1872d1451d4SHong Zhang if (!a->getrowcols) { PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals)); } 1886108893eSStefano Zampini if (idx) { 1896108893eSStefano Zampini PetscInt j; 190*07e43b41SHong Zhang for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j]; 1916108893eSStefano Zampini *idx = a->getrowcols; 1926108893eSStefano Zampini } 1936108893eSStefano Zampini if (v) { 1946108893eSStefano Zampini PetscInt j; 195*07e43b41SHong Zhang for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j]; 1966108893eSStefano Zampini *v = a->getrowvals; 1976108893eSStefano Zampini } 1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1996108893eSStefano Zampini } 2006108893eSStefano Zampini 201d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 202d71ae5a4SJacob Faibussowitsch { 2036108893eSStefano Zampini PetscFunctionBegin; 2043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2056108893eSStefano Zampini } 2066108893eSStefano Zampini 207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 208d71ae5a4SJacob Faibussowitsch { 209d4002b98SHong Zhang Mat B; 210d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 211e3f1f374SStefano Zampini PetscInt i; 212d4002b98SHong Zhang 213d4002b98SHong Zhang PetscFunctionBegin; 214ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 215ad013a7bSRichard Tran Mills B = *newmat; 2169566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 217ad013a7bSRichard Tran Mills } else { 2189566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 2209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 2219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen)); 222ad013a7bSRichard Tran Mills } 223d4002b98SHong Zhang 224e3f1f374SStefano Zampini for (i = 0; i < A->rmap->n; i++) { 225e108cb99SStefano Zampini PetscInt nz = 0, *cols = NULL; 226e108cb99SStefano Zampini PetscScalar *vals = NULL; 227e3f1f374SStefano Zampini 2289566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals)); 2299566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES)); 2309566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals)); 231d4002b98SHong Zhang } 232e3f1f374SStefano Zampini 2339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 235d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 236d4002b98SHong Zhang 237d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2389566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 239d4002b98SHong Zhang } else { 240d4002b98SHong Zhang *newmat = B; 241d4002b98SHong Zhang } 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243d4002b98SHong Zhang } 244d4002b98SHong Zhang 245d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 246d4002b98SHong Zhang 247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 248d71ae5a4SJacob Faibussowitsch { 249d4002b98SHong Zhang Mat B; 250d4002b98SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 251d4002b98SHong Zhang PetscInt *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols; 252d4002b98SHong Zhang const PetscInt *cols; 253d4002b98SHong Zhang const PetscScalar *vals; 254d4002b98SHong Zhang 255d4002b98SHong Zhang PetscFunctionBegin; 256ad013a7bSRichard Tran Mills 257ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 258ad013a7bSRichard Tran Mills B = *newmat; 259ad013a7bSRichard Tran Mills } else { 260d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 2619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlengths)); 262ad540459SPierre Jolivet for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i]; 263d5e5b2e5SBarry Smith } 264d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 265d5e5b2e5SBarry Smith PetscBool eq; 2669566063dSJacob Faibussowitsch PetscCall(PetscMemcmp(rowlengths, a->ilen, m * sizeof(PetscInt), &eq)); 26728b400f6SJacob Faibussowitsch PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect"); 2689566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlengths)); 269d5e5b2e5SBarry Smith rowlengths = a->ilen; 270d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 2719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, n, m, n)); 2739566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQSELL)); 2749566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths)); 2759566063dSJacob Faibussowitsch if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths)); 276ad013a7bSRichard Tran Mills } 277d4002b98SHong Zhang 278d4002b98SHong Zhang for (row = 0; row < m; row++) { 2799566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals)); 2809566063dSJacob Faibussowitsch PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES)); 2819566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals)); 282d4002b98SHong Zhang } 2839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 285d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 286d4002b98SHong Zhang 287d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2889566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 289d4002b98SHong Zhang } else { 290d4002b98SHong Zhang *newmat = B; 291d4002b98SHong Zhang } 2923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 293d4002b98SHong Zhang } 294d4002b98SHong Zhang 295d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy) 296d71ae5a4SJacob Faibussowitsch { 297d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 298d4002b98SHong Zhang PetscScalar *y; 299d4002b98SHong Zhang const PetscScalar *x; 300d4002b98SHong Zhang const MatScalar *aval = a->val; 301d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 302d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 3037285fed1SHong Zhang PetscInt i, j; 304d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 305d4002b98SHong Zhang __m512d vec_x, vec_y, vec_vals; 306d4002b98SHong Zhang __m256i vec_idx; 307d4002b98SHong Zhang __mmask8 mask; 308d4002b98SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4; 309d4002b98SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4; 3105f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 311a48a6482SHong Zhang __m128i vec_idx; 312a48a6482SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 313a48a6482SHong Zhang MatScalar yval; 314a48a6482SHong Zhang PetscInt r, rows_left, row, nnz_in_row; 31521cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 316d4002b98SHong Zhang __m128d vec_x_tmp; 317d4002b98SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 318d4002b98SHong Zhang MatScalar yval; 319d4002b98SHong Zhang PetscInt r, rows_left, row, nnz_in_row; 320d4002b98SHong Zhang #else 321*07e43b41SHong Zhang PetscInt k, sliceheight = a->sliceheight; 322*07e43b41SHong Zhang PetscScalar *sum; 323d4002b98SHong Zhang #endif 324d4002b98SHong Zhang 325d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 326d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 327d4002b98SHong Zhang #endif 328d4002b98SHong Zhang 329d4002b98SHong Zhang PetscFunctionBegin; 3309566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 3319566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 332d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 333*07e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 334d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 335d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 336d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 337d4002b98SHong Zhang 338d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 339d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 340d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 341d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 342d4002b98SHong Zhang 343da81f932SPierre Jolivet j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */ 344d4002b98SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) { 345d4002b98SHong Zhang case 3: 346d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3479371c9d4SSatish Balay acolidx += 8; 3489371c9d4SSatish Balay aval += 8; 349d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3509371c9d4SSatish Balay acolidx += 8; 3519371c9d4SSatish Balay aval += 8; 352d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 3539371c9d4SSatish Balay acolidx += 8; 3549371c9d4SSatish Balay aval += 8; 355d4002b98SHong Zhang j += 3; 356d4002b98SHong Zhang break; 357d4002b98SHong Zhang case 2: 358d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3599371c9d4SSatish Balay acolidx += 8; 3609371c9d4SSatish Balay aval += 8; 361d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3629371c9d4SSatish Balay acolidx += 8; 3639371c9d4SSatish Balay aval += 8; 364d4002b98SHong Zhang j += 2; 365d4002b98SHong Zhang break; 366d4002b98SHong Zhang case 1: 367d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3689371c9d4SSatish Balay acolidx += 8; 3699371c9d4SSatish Balay aval += 8; 370d4002b98SHong Zhang j += 1; 371d4002b98SHong Zhang break; 372d4002b98SHong Zhang } 373d4002b98SHong Zhang #pragma novector 374d4002b98SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) { 375d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3769371c9d4SSatish Balay acolidx += 8; 3779371c9d4SSatish Balay aval += 8; 378d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3799371c9d4SSatish Balay acolidx += 8; 3809371c9d4SSatish Balay aval += 8; 381d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 3829371c9d4SSatish Balay acolidx += 8; 3839371c9d4SSatish Balay aval += 8; 384d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4); 3859371c9d4SSatish Balay acolidx += 8; 3869371c9d4SSatish Balay aval += 8; 387d4002b98SHong Zhang } 388d4002b98SHong Zhang 389d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2); 390d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3); 391d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4); 392d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 393d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07))); 394ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y); 395d4002b98SHong Zhang } else { 396ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8 * i], vec_y); 397d4002b98SHong Zhang } 398d4002b98SHong Zhang } 3995f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 400*07e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 401a48a6482SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 402a48a6482SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 403a48a6482SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 404a48a6482SHong Zhang 405a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 406a48a6482SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 407a48a6482SHong Zhang rows_left = A->rmap->n - 8 * i; 408a48a6482SHong Zhang for (r = 0; r < rows_left; ++r) { 409a48a6482SHong Zhang yval = (MatScalar)0; 410a48a6482SHong Zhang row = 8 * i + r; 411a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 412a48a6482SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 413a48a6482SHong Zhang y[row] = yval; 414a48a6482SHong Zhang } 415a48a6482SHong Zhang break; 416a48a6482SHong Zhang } 417a48a6482SHong Zhang 418a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 419a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 420a48a6482SHong Zhang 421a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 422a48a6482SHong Zhang #pragma novector 423a48a6482SHong Zhang #pragma unroll(2) 424a48a6482SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 425a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 4269371c9d4SSatish Balay aval += 4; 4279371c9d4SSatish Balay acolidx += 4; 428a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2); 4299371c9d4SSatish Balay aval += 4; 4309371c9d4SSatish Balay acolidx += 4; 431a48a6482SHong Zhang } 432a48a6482SHong Zhang 433ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8, vec_y); 434ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8 + 4, vec_y2); 435a48a6482SHong Zhang } 43621cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 437*07e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 438d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 439d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 440d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 441d4002b98SHong Zhang 442d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 443d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 444d4002b98SHong Zhang 445d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 446d4002b98SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 447d4002b98SHong Zhang rows_left = A->rmap->n - 8 * i; 448d4002b98SHong Zhang for (r = 0; r < rows_left; ++r) { 449d4002b98SHong Zhang yval = (MatScalar)0; 450d4002b98SHong Zhang row = 8 * i + r; 451d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 452d4002b98SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 453d4002b98SHong Zhang y[row] = yval; 454d4002b98SHong Zhang } 455d4002b98SHong Zhang break; 456d4002b98SHong Zhang } 457d4002b98SHong Zhang 458d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 459a48a6482SHong Zhang #pragma novector 460a48a6482SHong Zhang #pragma unroll(2) 4617285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 462d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 463165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 464d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 465d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 466d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 467d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 468d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 469d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 470d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y); 471d4002b98SHong Zhang aval += 4; 472d4002b98SHong Zhang 473d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 474d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 475d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 476d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 477d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 478d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 479d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 480d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2); 481d4002b98SHong Zhang aval += 4; 482d4002b98SHong Zhang } 483d4002b98SHong Zhang 484d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8, vec_y); 485d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8 + 4, vec_y2); 486d4002b98SHong Zhang } 487d4002b98SHong Zhang #else 488*07e43b41SHong Zhang PetscCall(PetscMalloc1(sliceheight, &sum)); 489d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 490*07e43b41SHong Zhang for (j = 0; j < sliceheight; j++) { 4912d1451d4SHong Zhang sum[j] = 0.0; 492*07e43b41SHong Zhang for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]]; 493d4002b98SHong Zhang } 494*07e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */ 495*07e43b41SHong Zhang for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j]; 496d4002b98SHong Zhang } else { 497*07e43b41SHong Zhang for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j]; 498d4002b98SHong Zhang } 499d4002b98SHong Zhang } 500*07e43b41SHong Zhang PetscCall(PetscFree(sum)); 501d4002b98SHong Zhang #endif 502d4002b98SHong Zhang 5039566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */ 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 5063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 507d4002b98SHong Zhang } 508d4002b98SHong Zhang 509d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz) 511d71ae5a4SJacob Faibussowitsch { 512d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 513d4002b98SHong Zhang PetscScalar *y, *z; 514d4002b98SHong Zhang const PetscScalar *x; 515d4002b98SHong Zhang const MatScalar *aval = a->val; 516d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 517d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 518d4002b98SHong Zhang PetscInt i, j; 519d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5207285fed1SHong Zhang __m512d vec_x, vec_y, vec_vals; 521d4002b98SHong Zhang __m256i vec_idx; 522d4002b98SHong Zhang __mmask8 mask; 5237285fed1SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4; 5247285fed1SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4; 52521cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5267285fed1SHong Zhang __m128d vec_x_tmp; 5277285fed1SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 5287285fed1SHong Zhang MatScalar yval; 5297285fed1SHong Zhang PetscInt r, row, nnz_in_row; 530d4002b98SHong Zhang #else 531*07e43b41SHong Zhang PetscInt k, sliceheight = a->sliceheight; 532*07e43b41SHong Zhang PetscScalar *sum; 533d4002b98SHong Zhang #endif 534d4002b98SHong Zhang 535d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 536d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 537d4002b98SHong Zhang #endif 538d4002b98SHong Zhang 539d4002b98SHong Zhang PetscFunctionBegin; 5402d1451d4SHong Zhang if (!a->nz) { 5412d1451d4SHong Zhang PetscCall(VecCopy(yy, zz)); 5422d1451d4SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 5432d1451d4SHong Zhang } 5449566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 5459566063dSJacob Faibussowitsch PetscCall(VecGetArrayPair(yy, zz, &y, &z)); 546d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 547*07e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 5487285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 5497285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 5507285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 5517285fed1SHong Zhang 552d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 553d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07))); 554ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]); 5557285fed1SHong Zhang } else { 556ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8 * i]); 5577285fed1SHong Zhang } 5587285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5597285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5607285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5617285fed1SHong Zhang 562da81f932SPierre Jolivet j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */ 5637285fed1SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) { 5647285fed1SHong Zhang case 3: 5657285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5669371c9d4SSatish Balay acolidx += 8; 5679371c9d4SSatish Balay aval += 8; 5687285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5699371c9d4SSatish Balay acolidx += 8; 5709371c9d4SSatish Balay aval += 8; 5717285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 5729371c9d4SSatish Balay acolidx += 8; 5739371c9d4SSatish Balay aval += 8; 5747285fed1SHong Zhang j += 3; 5757285fed1SHong Zhang break; 5767285fed1SHong Zhang case 2: 5777285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5789371c9d4SSatish Balay acolidx += 8; 5799371c9d4SSatish Balay aval += 8; 5807285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5819371c9d4SSatish Balay acolidx += 8; 5829371c9d4SSatish Balay aval += 8; 5837285fed1SHong Zhang j += 2; 5847285fed1SHong Zhang break; 5857285fed1SHong Zhang case 1: 5867285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5879371c9d4SSatish Balay acolidx += 8; 5889371c9d4SSatish Balay aval += 8; 5897285fed1SHong Zhang j += 1; 5907285fed1SHong Zhang break; 5917285fed1SHong Zhang } 5927285fed1SHong Zhang #pragma novector 5937285fed1SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) { 5947285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5959371c9d4SSatish Balay acolidx += 8; 5969371c9d4SSatish Balay aval += 8; 5977285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5989371c9d4SSatish Balay acolidx += 8; 5999371c9d4SSatish Balay aval += 8; 6007285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 6019371c9d4SSatish Balay acolidx += 8; 6029371c9d4SSatish Balay aval += 8; 6037285fed1SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4); 6049371c9d4SSatish Balay acolidx += 8; 6059371c9d4SSatish Balay aval += 8; 6067285fed1SHong Zhang } 6077285fed1SHong Zhang 6087285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2); 6097285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3); 6107285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4); 6117285fed1SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 612ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y); 613d4002b98SHong Zhang } else { 614ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8 * i], vec_y); 615d4002b98SHong Zhang } 6167285fed1SHong Zhang } 61721cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 618*07e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 6197285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 6207285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 6217285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 6227285fed1SHong Zhang 6237285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6247285fed1SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 6257285fed1SHong Zhang for (r = 0; r < (A->rmap->n & 0x07); ++r) { 6267285fed1SHong Zhang row = 8 * i + r; 6277285fed1SHong Zhang yval = (MatScalar)0.0; 6287285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6297285fed1SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 6307285fed1SHong Zhang z[row] = y[row] + yval; 6317285fed1SHong Zhang } 6327285fed1SHong Zhang break; 6337285fed1SHong Zhang } 6347285fed1SHong Zhang 6357285fed1SHong Zhang vec_y = _mm256_loadu_pd(y + 8 * i); 6367285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y + 8 * i + 4); 6377285fed1SHong Zhang 6387285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6397285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 6407285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 641165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 6427285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6437285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 644165f9cc3SJed Brown vec_x = _mm256_setzero_pd(); 6457285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 6467285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6477285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6487285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 6497285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y); 6507285fed1SHong Zhang aval += 4; 6517285fed1SHong Zhang 6527285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6537285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6547285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6557285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 6567285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6577285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6587285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 6597285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2); 6607285fed1SHong Zhang aval += 4; 6617285fed1SHong Zhang } 6627285fed1SHong Zhang 6637285fed1SHong Zhang _mm256_storeu_pd(z + i * 8, vec_y); 6647285fed1SHong Zhang _mm256_storeu_pd(z + i * 8 + 4, vec_y2); 6657285fed1SHong Zhang } 666d4002b98SHong Zhang #else 667*07e43b41SHong Zhang PetscCall(PetscMalloc1(sliceheight, &sum)); 6687285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 669*07e43b41SHong Zhang for (j = 0; j < sliceheight; j++) { 6702d1451d4SHong Zhang sum[j] = 0.0; 671*07e43b41SHong Zhang for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]]; 672d4002b98SHong Zhang } 673*07e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { 674*07e43b41SHong Zhang for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j]; 675d4002b98SHong Zhang } else { 676*07e43b41SHong Zhang for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j]; 6777285fed1SHong Zhang } 678d4002b98SHong Zhang } 679*07e43b41SHong Zhang PetscCall(PetscFree(sum)); 680d4002b98SHong Zhang #endif 681d4002b98SHong Zhang 6829566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 6839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 6849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayPair(yy, zz, &y, &z)); 6853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 686d4002b98SHong Zhang } 687d4002b98SHong Zhang 688d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy) 689d71ae5a4SJacob Faibussowitsch { 690d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 691d4002b98SHong Zhang PetscScalar *y; 692d4002b98SHong Zhang const PetscScalar *x; 693d4002b98SHong Zhang const MatScalar *aval = a->val; 694d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 695*07e43b41SHong Zhang PetscInt i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight; 696d4002b98SHong Zhang 697d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 698d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 699d4002b98SHong Zhang #endif 700d4002b98SHong Zhang 701d4002b98SHong Zhang PetscFunctionBegin; 702b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) { 7039566063dSJacob Faibussowitsch PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy)); 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7059fc32365SStefano Zampini } 7069566063dSJacob Faibussowitsch if (zz != yy) PetscCall(VecCopy(zz, yy)); 7072d1451d4SHong Zhang 7082d1451d4SHong Zhang if (a->nz) { 7099566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 7109566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 711d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 712*07e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { 713*07e43b41SHong Zhang for (r = 0; r < (A->rmap->n % sliceheight); ++r) { 714*07e43b41SHong Zhang row = sliceheight * i + r; 7157285fed1SHong Zhang nnz_in_row = a->rlen[row]; 716*07e43b41SHong Zhang for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row]; 7177285fed1SHong Zhang } 7187285fed1SHong Zhang break; 7197285fed1SHong Zhang } 720*07e43b41SHong Zhang for (r = 0; r < sliceheight; ++r) 721*07e43b41SHong Zhang for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r]; 722d4002b98SHong Zhang } 7232d1451d4SHong Zhang PetscCall(PetscLogFlops(2.0 * a->nz)); 7249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 7259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 7262d1451d4SHong Zhang } 7273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 728d4002b98SHong Zhang } 729d4002b98SHong Zhang 730d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy) 731d71ae5a4SJacob Faibussowitsch { 732d4002b98SHong Zhang PetscFunctionBegin; 733b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) { 7349566063dSJacob Faibussowitsch PetscCall(MatMult_SeqSELL(A, xx, yy)); 7359fc32365SStefano Zampini } else { 7369566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 7379566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy)); 7389fc32365SStefano Zampini } 7393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 740d4002b98SHong Zhang } 741d4002b98SHong Zhang 742d4002b98SHong Zhang /* 743d4002b98SHong Zhang Checks for missing diagonals 744d4002b98SHong Zhang */ 745d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A, PetscBool *missing, PetscInt *d) 746d71ae5a4SJacob Faibussowitsch { 747d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 748d4002b98SHong Zhang PetscInt *diag, i; 749d4002b98SHong Zhang 750d4002b98SHong Zhang PetscFunctionBegin; 751d4002b98SHong Zhang *missing = PETSC_FALSE; 752d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 753d4002b98SHong Zhang *missing = PETSC_TRUE; 754d4002b98SHong Zhang if (d) *d = 0; 7559566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n")); 756d4002b98SHong Zhang } else { 757d4002b98SHong Zhang diag = a->diag; 758d4002b98SHong Zhang for (i = 0; i < A->rmap->n; i++) { 759d4002b98SHong Zhang if (diag[i] == -1) { 760d4002b98SHong Zhang *missing = PETSC_TRUE; 761d4002b98SHong Zhang if (d) *d = i; 7629566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix is missing diagonal number %" PetscInt_FMT "\n", i)); 763d4002b98SHong Zhang break; 764d4002b98SHong Zhang } 765d4002b98SHong Zhang } 766d4002b98SHong Zhang } 7673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768d4002b98SHong Zhang } 769d4002b98SHong Zhang 770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 771d71ae5a4SJacob Faibussowitsch { 772d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 773d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 774d4002b98SHong Zhang 775d4002b98SHong Zhang PetscFunctionBegin; 776d4002b98SHong Zhang if (!a->diag) { 7779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &a->diag)); 778d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 779d4002b98SHong Zhang } 780d4002b98SHong Zhang for (i = 0; i < m; i++) { /* loop over rows */ 781*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 782d4002b98SHong Zhang a->diag[i] = -1; 783d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 784*07e43b41SHong Zhang if (a->colidx[shift + a->sliceheight * j] == i) { 785*07e43b41SHong Zhang a->diag[i] = shift + a->sliceheight * j; 786d4002b98SHong Zhang break; 787d4002b98SHong Zhang } 788d4002b98SHong Zhang } 789d4002b98SHong Zhang } 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 791d4002b98SHong Zhang } 792d4002b98SHong Zhang 793d4002b98SHong Zhang /* 794d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 795d4002b98SHong Zhang */ 796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift) 797d71ae5a4SJacob Faibussowitsch { 798d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 799d4002b98SHong Zhang PetscInt i, *diag, m = A->rmap->n; 800d4002b98SHong Zhang MatScalar *val = a->val; 801d4002b98SHong Zhang PetscScalar *idiag, *mdiag; 802d4002b98SHong Zhang 803d4002b98SHong Zhang PetscFunctionBegin; 8043ba16761SJacob Faibussowitsch if (a->idiagvalid) PetscFunctionReturn(PETSC_SUCCESS); 8059566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 806d4002b98SHong Zhang diag = a->diag; 807d4002b98SHong Zhang if (!a->idiag) { 8089566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work)); 809d4002b98SHong Zhang val = a->val; 810d4002b98SHong Zhang } 811d4002b98SHong Zhang mdiag = a->mdiag; 812d4002b98SHong Zhang idiag = a->idiag; 813d4002b98SHong Zhang 814d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 815d4002b98SHong Zhang for (i = 0; i < m; i++) { 816d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 817d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 8180fdf79fbSJacob Faibussowitsch PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i); 8199566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i)); 820d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 821d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 822d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 823d4002b98SHong Zhang } 824d4002b98SHong Zhang idiag[i] = 1.0 / val[diag[i]]; 825d4002b98SHong Zhang } 8269566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(m)); 827d4002b98SHong Zhang } else { 828d4002b98SHong Zhang for (i = 0; i < m; i++) { 829d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 830d4002b98SHong Zhang idiag[i] = omega / (fshift + val[diag[i]]); 831d4002b98SHong Zhang } 8329566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * m)); 833d4002b98SHong Zhang } 834d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 8353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 836d4002b98SHong Zhang } 837d4002b98SHong Zhang 838d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 839d71ae5a4SJacob Faibussowitsch { 840d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 841d4002b98SHong Zhang 842d4002b98SHong Zhang PetscFunctionBegin; 8439566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices])); 8449566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 8453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 846d4002b98SHong Zhang } 847d4002b98SHong Zhang 848d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A) 849d71ae5a4SJacob Faibussowitsch { 850d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 851d4002b98SHong Zhang 852d4002b98SHong Zhang PetscFunctionBegin; 853d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 8543ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz)); 855d4002b98SHong Zhang #endif 8569566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx)); 8579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 8589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 8599566063dSJacob Faibussowitsch PetscCall(PetscFree(a->diag)); 8609566063dSJacob Faibussowitsch PetscCall(PetscFree(a->rlen)); 8619566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sliidx)); 8629566063dSJacob Faibussowitsch PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work)); 8639566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 8649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 8659566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 8669566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->getrowcols, a->getrowvals)); 8679566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 868d4002b98SHong Zhang 8699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL)); 8709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL)); 8719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL)); 8729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL)); 8732e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL)); 8742e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL)); 8752d1451d4SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_SeqSELL_SeqAIJ_C", NULL)); 8762d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 8772d1451d4SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_SeqSELL_SeqSELLCUDA_C", NULL)); 8782d1451d4SHong Zhang #endif 879*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL)); 880*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL)); 881*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL)); 882*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL)); 8833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 884d4002b98SHong Zhang } 885d4002b98SHong Zhang 886d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg) 887d71ae5a4SJacob Faibussowitsch { 888d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 889d4002b98SHong Zhang 890d4002b98SHong Zhang PetscFunctionBegin; 891d4002b98SHong Zhang switch (op) { 892d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 893d71ae5a4SJacob Faibussowitsch a->roworiented = flg; 894d71ae5a4SJacob Faibussowitsch break; 895d71ae5a4SJacob Faibussowitsch case MAT_KEEP_NONZERO_PATTERN: 896d71ae5a4SJacob Faibussowitsch a->keepnonzeropattern = flg; 897d71ae5a4SJacob Faibussowitsch break; 898d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATIONS: 899d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? 0 : 1); 900d71ae5a4SJacob Faibussowitsch break; 901d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATION_ERR: 902d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -1 : 0); 903d71ae5a4SJacob Faibussowitsch break; 904d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_ALLOCATION_ERR: 905d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -2 : 0); 906d71ae5a4SJacob Faibussowitsch break; 907d71ae5a4SJacob Faibussowitsch case MAT_UNUSED_NONZERO_LOCATION_ERR: 908d71ae5a4SJacob Faibussowitsch a->nounused = (flg ? -1 : 0); 909d71ae5a4SJacob Faibussowitsch break; 9108c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 911d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 912d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 913d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 914d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 915d71ae5a4SJacob Faibussowitsch break; 916d4002b98SHong Zhang case MAT_SPD: 917d4002b98SHong Zhang case MAT_SYMMETRIC: 918d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 919d4002b98SHong Zhang case MAT_HERMITIAN: 920d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 921b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 922b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 923d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 924d4002b98SHong Zhang break; 925d71ae5a4SJacob Faibussowitsch default: 926d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 927d4002b98SHong Zhang } 9283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 929d4002b98SHong Zhang } 930d4002b98SHong Zhang 931d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v) 932d71ae5a4SJacob Faibussowitsch { 933d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 934d4002b98SHong Zhang PetscInt i, j, n, shift; 935d4002b98SHong Zhang PetscScalar *x, zero = 0.0; 936d4002b98SHong Zhang 937d4002b98SHong Zhang PetscFunctionBegin; 9389566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 93908401ef6SPierre Jolivet PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 940d4002b98SHong Zhang 941d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 942d4002b98SHong Zhang PetscInt *diag = a->diag; 9439566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 944d4002b98SHong Zhang for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]]; 9459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 9463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 947d4002b98SHong Zhang } 948d4002b98SHong Zhang 9499566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 9509566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 951d4002b98SHong Zhang for (i = 0; i < n; i++) { /* loop over rows */ 952*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 953d4002b98SHong Zhang x[i] = 0; 954d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 955*07e43b41SHong Zhang if (a->colidx[shift + a->sliceheight * j] == i) { 956*07e43b41SHong Zhang x[i] = a->val[shift + a->sliceheight * j]; 957d4002b98SHong Zhang break; 958d4002b98SHong Zhang } 959d4002b98SHong Zhang } 960d4002b98SHong Zhang } 9619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 9623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 963d4002b98SHong Zhang } 964d4002b98SHong Zhang 965d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr) 966d71ae5a4SJacob Faibussowitsch { 967d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 968d4002b98SHong Zhang const PetscScalar *l, *r; 969d4002b98SHong Zhang PetscInt i, j, m, n, row; 970d4002b98SHong Zhang 971d4002b98SHong Zhang PetscFunctionBegin; 972d4002b98SHong Zhang if (ll) { 973d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 974d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 9759566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &m)); 97608401ef6SPierre Jolivet PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length"); 9779566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 978d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 979*07e43b41SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */ 980*07e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { 981*07e43b41SHong Zhang if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row]; 982dab86139SHong Zhang } 983dab86139SHong Zhang } else { 984*07e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { a->val[j] *= l[a->sliceheight * i + row]; } 985d4002b98SHong Zhang } 986dab86139SHong Zhang } 9879566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 9889566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 989d4002b98SHong Zhang } 990d4002b98SHong Zhang if (rr) { 9919566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &n)); 99208401ef6SPierre Jolivet PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length"); 9939566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &r)); 994d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 995*07e43b41SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */ 996*07e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) { 997*07e43b41SHong Zhang if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]]; 998dab86139SHong Zhang } 999dab86139SHong Zhang } else { 1000ad540459SPierre Jolivet for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]]; 1001d4002b98SHong Zhang } 1002dab86139SHong Zhang } 10039566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &r)); 10049566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1005d4002b98SHong Zhang } 10069566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 10072d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 10082d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU; 10092d1451d4SHong Zhang #endif 10103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1011d4002b98SHong Zhang } 1012d4002b98SHong Zhang 1013d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[]) 1014d71ae5a4SJacob Faibussowitsch { 1015d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1016d4002b98SHong Zhang PetscInt *cp, i, k, low, high, t, row, col, l; 1017d4002b98SHong Zhang PetscInt shift; 1018d4002b98SHong Zhang MatScalar *vp; 1019d4002b98SHong Zhang 1020d4002b98SHong Zhang PetscFunctionBegin; 102168aafef3SStefano Zampini for (k = 0; k < m; k++) { /* loop over requested rows */ 1022d4002b98SHong Zhang row = im[k]; 1023d4002b98SHong Zhang if (row < 0) continue; 10246bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1); 1025*07e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */ 1026d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */ 1027d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */ 102868aafef3SStefano Zampini for (l = 0; l < n; l++) { /* loop over requested columns */ 1029d4002b98SHong Zhang col = in[l]; 1030d4002b98SHong Zhang if (col < 0) continue; 10316bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1); 10329371c9d4SSatish Balay high = a->rlen[row]; 10339371c9d4SSatish Balay low = 0; /* assume unsorted */ 1034d4002b98SHong Zhang while (high - low > 5) { 1035d4002b98SHong Zhang t = (low + high) / 2; 1036*07e43b41SHong Zhang if (*(cp + a->sliceheight * t) > col) high = t; 1037d4002b98SHong Zhang else low = t; 1038d4002b98SHong Zhang } 1039d4002b98SHong Zhang for (i = low; i < high; i++) { 1040*07e43b41SHong Zhang if (*(cp + a->sliceheight * i) > col) break; 1041*07e43b41SHong Zhang if (*(cp + a->sliceheight * i) == col) { 1042*07e43b41SHong Zhang *v++ = *(vp + a->sliceheight * i); 1043d4002b98SHong Zhang goto finished; 1044d4002b98SHong Zhang } 1045d4002b98SHong Zhang } 1046d4002b98SHong Zhang *v++ = 0.0; 1047d4002b98SHong Zhang finished:; 1048d4002b98SHong Zhang } 1049d4002b98SHong Zhang } 10503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1051d4002b98SHong Zhang } 1052d4002b98SHong Zhang 1053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer) 1054d71ae5a4SJacob Faibussowitsch { 1055d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1056d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 1057d4002b98SHong Zhang const char *name; 1058d4002b98SHong Zhang PetscViewerFormat format; 1059d4002b98SHong Zhang 1060d4002b98SHong Zhang PetscFunctionBegin; 10619566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1062d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1063d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1064d4002b98SHong Zhang /* 1065d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1066d4002b98SHong Zhang nofinalvalue = 1; 1067d4002b98SHong Zhang } 1068d4002b98SHong Zhang */ 10699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 10709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n)); 10719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz)); 1072d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue)); 1074d4002b98SHong Zhang #else 10759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue)); 1076d4002b98SHong Zhang #endif 10779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n")); 1078d4002b98SHong Zhang 1079d4002b98SHong Zhang for (i = 0; i < m; i++) { 1080*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1081d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1082d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1083*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1084d4002b98SHong Zhang #else 1085*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j])); 1086d4002b98SHong Zhang #endif 1087d4002b98SHong Zhang } 1088d4002b98SHong Zhang } 1089d4002b98SHong Zhang /* 1090d4002b98SHong Zhang if (nofinalvalue) { 1091d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.)); 1093d4002b98SHong Zhang #else 10949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0)); 1095d4002b98SHong Zhang #endif 1096d4002b98SHong Zhang } 1097d4002b98SHong Zhang */ 10989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &name)); 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name)); 11009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1101d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 11049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1105d4002b98SHong Zhang for (i = 0; i < m; i++) { 11069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1107*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1108d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1109d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1110*07e43b41SHong Zhang if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) { 1111*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1112*07e43b41SHong Zhang } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) { 1113*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1114*07e43b41SHong Zhang } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) { 1115*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]))); 1116d4002b98SHong Zhang } 1117d4002b98SHong Zhang #else 1118*07e43b41SHong Zhang if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j])); 1119d4002b98SHong Zhang #endif 1120d4002b98SHong Zhang } 11219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1122d4002b98SHong Zhang } 11239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1124d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1125d4002b98SHong Zhang PetscInt cnt = 0, jcnt; 1126d4002b98SHong Zhang PetscScalar value; 1127d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1128d4002b98SHong Zhang PetscBool realonly = PETSC_TRUE; 1129d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { 1130d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1131d4002b98SHong Zhang realonly = PETSC_FALSE; 1132d4002b98SHong Zhang break; 1133d4002b98SHong Zhang } 1134d4002b98SHong Zhang } 1135d4002b98SHong Zhang #endif 1136d4002b98SHong Zhang 11379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1138d4002b98SHong Zhang for (i = 0; i < m; i++) { 1139d4002b98SHong Zhang jcnt = 0; 1140*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1141d4002b98SHong Zhang for (j = 0; j < A->cmap->n; j++) { 1142*07e43b41SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) { 1143d4002b98SHong Zhang value = a->val[cnt++]; 1144d4002b98SHong Zhang jcnt++; 1145d4002b98SHong Zhang } else { 1146d4002b98SHong Zhang value = 0.0; 1147d4002b98SHong Zhang } 1148d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1149d4002b98SHong Zhang if (realonly) { 11509566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value))); 1151d4002b98SHong Zhang } else { 11529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value))); 1153d4002b98SHong Zhang } 1154d4002b98SHong Zhang #else 11559566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value)); 1156d4002b98SHong Zhang #endif 1157d4002b98SHong Zhang } 11589566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1159d4002b98SHong Zhang } 11609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1161d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1162d4002b98SHong Zhang PetscInt fshift = 1; 11639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1164d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n")); 1166d4002b98SHong Zhang #else 11679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n")); 1168d4002b98SHong Zhang #endif 11699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz)); 1170d4002b98SHong Zhang for (i = 0; i < m; i++) { 1171*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1172d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1173d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1174*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1175d4002b98SHong Zhang #else 1176*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j])); 1177d4002b98SHong Zhang #endif 1178d4002b98SHong Zhang } 1179d4002b98SHong Zhang } 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 118168aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 118268aafef3SStefano Zampini for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 118368aafef3SStefano Zampini PetscInt row; 11849566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1])); 1185*07e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { 118668aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 118768aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 1188*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 118968aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1190*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j]))); 119168aafef3SStefano Zampini } else { 1192*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]))); 119368aafef3SStefano Zampini } 119468aafef3SStefano Zampini #else 1195*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j])); 119668aafef3SStefano Zampini #endif 119768aafef3SStefano Zampini } 119868aafef3SStefano Zampini } 1199d4002b98SHong Zhang } else { 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1201d4002b98SHong Zhang if (A->factortype) { 1202d4002b98SHong Zhang for (i = 0; i < m; i++) { 1203*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1205d4002b98SHong Zhang /* L part */ 1206*07e43b41SHong Zhang for (j = shift; j < a->diag[i]; j += a->sliceheight) { 1207d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1208*07e43b41SHong Zhang if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) { 12099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 1210*07e43b41SHong Zhang } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) { 12119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j])))); 1212d4002b98SHong Zhang } else { 12139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j]))); 1214d4002b98SHong Zhang } 1215d4002b98SHong Zhang #else 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j])); 1217d4002b98SHong Zhang #endif 1218d4002b98SHong Zhang } 1219d4002b98SHong Zhang /* diagonal */ 1220d4002b98SHong Zhang j = a->diag[i]; 1221d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1222d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j]))); 1224d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j])))); 1226d4002b98SHong Zhang } else { 12279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]))); 1228d4002b98SHong Zhang } 1229d4002b98SHong Zhang #else 12309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1.0 / a->val[j]))); 1231d4002b98SHong Zhang #endif 1232d4002b98SHong Zhang 1233d4002b98SHong Zhang /* U part */ 1234*07e43b41SHong Zhang for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) { 1235d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1236d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 1238d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j])))); 1240d4002b98SHong Zhang } else { 12419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j]))); 1242d4002b98SHong Zhang } 1243d4002b98SHong Zhang #else 12449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j])); 1245d4002b98SHong Zhang #endif 1246d4002b98SHong Zhang } 12479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1248d4002b98SHong Zhang } 1249d4002b98SHong Zhang } else { 1250d4002b98SHong Zhang for (i = 0; i < m; i++) { 1251*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 12529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1253d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1254d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1255d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1256*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1257d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1258*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1259d4002b98SHong Zhang } else { 1260*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]))); 1261d4002b98SHong Zhang } 1262d4002b98SHong Zhang #else 1263*07e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j])); 1264d4002b98SHong Zhang #endif 1265d4002b98SHong Zhang } 12669566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1267d4002b98SHong Zhang } 1268d4002b98SHong Zhang } 12699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1270d4002b98SHong Zhang } 12719566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1273d4002b98SHong Zhang } 1274d4002b98SHong Zhang 1275d4002b98SHong Zhang #include <petscdraw.h> 1276d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa) 1277d71ae5a4SJacob Faibussowitsch { 1278d4002b98SHong Zhang Mat A = (Mat)Aa; 1279d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1280d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 1281d4002b98SHong Zhang int color; 1282d4002b98SHong Zhang PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r; 1283d4002b98SHong Zhang PetscViewer viewer; 1284d4002b98SHong Zhang PetscViewerFormat format; 1285d4002b98SHong Zhang 1286d4002b98SHong Zhang PetscFunctionBegin; 12879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer)); 12889566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 12899566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr)); 1290d4002b98SHong Zhang 1291d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1292d4002b98SHong Zhang 1293d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1294d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1295d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1296d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1297d4002b98SHong Zhang for (i = 0; i < m; i++) { 1298*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 12999371c9d4SSatish Balay y_l = m - i - 1.0; 13009371c9d4SSatish Balay y_r = y_l + 1.0; 1301d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1302*07e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 13039371c9d4SSatish Balay x_r = x_l + 1.0; 1304*07e43b41SHong Zhang if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue; 13059566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1306d4002b98SHong Zhang } 1307d4002b98SHong Zhang } 1308d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1309d4002b98SHong Zhang for (i = 0; i < m; i++) { 1310*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 13119371c9d4SSatish Balay y_l = m - i - 1.0; 13129371c9d4SSatish Balay y_r = y_l + 1.0; 1313d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1314*07e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 13159371c9d4SSatish Balay x_r = x_l + 1.0; 1316*07e43b41SHong Zhang if (a->val[shift + a->sliceheight * j] != 0.) continue; 13179566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1318d4002b98SHong Zhang } 1319d4002b98SHong Zhang } 1320d4002b98SHong Zhang color = PETSC_DRAW_RED; 1321d4002b98SHong Zhang for (i = 0; i < m; i++) { 1322*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 13239371c9d4SSatish Balay y_l = m - i - 1.0; 13249371c9d4SSatish Balay y_r = y_l + 1.0; 1325d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1326*07e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 13279371c9d4SSatish Balay x_r = x_l + 1.0; 1328*07e43b41SHong Zhang if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue; 13299566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1330d4002b98SHong Zhang } 1331d4002b98SHong Zhang } 1332d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1333d4002b98SHong Zhang } else { 1334d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1335d4002b98SHong Zhang /* first determine max of all nonzero values */ 1336d4002b98SHong Zhang PetscReal minv = 0.0, maxv = 0.0; 1337d4002b98SHong Zhang PetscInt count = 0; 1338d4002b98SHong Zhang PetscDraw popup; 1339d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { 1340d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1341d4002b98SHong Zhang } 1342d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 13449566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, minv, maxv)); 1345d4002b98SHong Zhang 1346d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1347d4002b98SHong Zhang for (i = 0; i < m; i++) { 1348*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1349d4002b98SHong Zhang y_l = m - i - 1.0; 1350d4002b98SHong Zhang y_r = y_l + 1.0; 1351d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1352*07e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 1353d4002b98SHong Zhang x_r = x_l + 1.0; 1354d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv); 13559566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1356d4002b98SHong Zhang count++; 1357d4002b98SHong Zhang } 1358d4002b98SHong Zhang } 1359d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1360d4002b98SHong Zhang } 13613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1362d4002b98SHong Zhang } 1363d4002b98SHong Zhang 1364d4002b98SHong Zhang #include <petscdraw.h> 1365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer) 1366d71ae5a4SJacob Faibussowitsch { 1367d4002b98SHong Zhang PetscDraw draw; 1368d4002b98SHong Zhang PetscReal xr, yr, xl, yl, h, w; 1369d4002b98SHong Zhang PetscBool isnull; 1370d4002b98SHong Zhang 1371d4002b98SHong Zhang PetscFunctionBegin; 13729566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13739566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13743ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 1375d4002b98SHong Zhang 13769371c9d4SSatish Balay xr = A->cmap->n; 13779371c9d4SSatish Balay yr = A->rmap->n; 13789371c9d4SSatish Balay h = yr / 10.0; 13799371c9d4SSatish Balay w = xr / 10.0; 13809371c9d4SSatish Balay xr += w; 13819371c9d4SSatish Balay yr += h; 13829371c9d4SSatish Balay xl = -w; 13839371c9d4SSatish Balay yl = -h; 13849566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr)); 13859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer)); 13869566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A)); 13879566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL)); 13889566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 13893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1390d4002b98SHong Zhang } 1391d4002b98SHong Zhang 1392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer) 1393d71ae5a4SJacob Faibussowitsch { 1394d4002b98SHong Zhang PetscBool iascii, isbinary, isdraw; 1395d4002b98SHong Zhang 1396d4002b98SHong Zhang PetscFunctionBegin; 13979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 1400d4002b98SHong Zhang if (iascii) { 14019566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL_ASCII(A, viewer)); 1402d4002b98SHong Zhang } else if (isbinary) { 14039566063dSJacob Faibussowitsch /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */ 14041baa6e33SBarry Smith } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer)); 14053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1406d4002b98SHong Zhang } 1407d4002b98SHong Zhang 1408d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode) 1409d71ae5a4SJacob Faibussowitsch { 1410d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1411d4002b98SHong Zhang PetscInt i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k; 1412d4002b98SHong Zhang MatScalar *vp; 1413d4002b98SHong Zhang 1414d4002b98SHong Zhang PetscFunctionBegin; 14153ba16761SJacob Faibussowitsch if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS); 1416d4002b98SHong Zhang /* To do: compress out the unused elements */ 14179566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 14189566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz)); 14199566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs)); 14209566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax)); 14212d1451d4SHong Zhang a->nonzerorowcnt = 0; 1422d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1423d4002b98SHong Zhang for (i = 0; i < a->totalslices; ++i) { 1424d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1425d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the column indices of the slice */ 1426d4002b98SHong Zhang vp = a->val + shift; /* pointer to the nonzero values of the slice */ 1427*07e43b41SHong Zhang for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */ 1428*07e43b41SHong Zhang row = a->sliceheight * i + row_in_slice; 1429d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1430d4002b98SHong Zhang /* 1431d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1432d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1433d4002b98SHong Zhang */ 1434d4002b98SHong Zhang lastcol = 0; 1435d4002b98SHong Zhang if (nrow > 0) { /* nonempty row */ 14362d1451d4SHong Zhang a->nonzerorowcnt++; 1437*07e43b41SHong Zhang lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */ 1438aaa8cc7dSPierre Jolivet } else if (!row_in_slice) { /* first row of the correct slice is empty */ 1439*07e43b41SHong Zhang for (j = 1; j < a->sliceheight; j++) { 1440*07e43b41SHong Zhang if (a->rlen[a->sliceheight * i + j]) { 1441d4002b98SHong Zhang lastcol = cp[j]; 1442d4002b98SHong Zhang break; 1443d4002b98SHong Zhang } 1444d4002b98SHong Zhang } 1445d4002b98SHong Zhang } else { 1446d4002b98SHong Zhang if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */ 1447d4002b98SHong Zhang } 1448d4002b98SHong Zhang 1449*07e43b41SHong Zhang for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) { 1450*07e43b41SHong Zhang cp[a->sliceheight * k + row_in_slice] = lastcol; 1451*07e43b41SHong Zhang vp[a->sliceheight * k + row_in_slice] = (MatScalar)0; 1452d4002b98SHong Zhang } 1453d4002b98SHong Zhang } 1454d4002b98SHong Zhang } 1455d4002b98SHong Zhang 1456d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1457d4002b98SHong Zhang a->reallocs = 0; 1458d4002b98SHong Zhang 14599566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 14603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1461d4002b98SHong Zhang } 1462d4002b98SHong Zhang 1463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info) 1464d71ae5a4SJacob Faibussowitsch { 1465d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1466d4002b98SHong Zhang 1467d4002b98SHong Zhang PetscFunctionBegin; 1468d4002b98SHong Zhang info->block_size = 1.0; 14693966268fSBarry Smith info->nz_allocated = a->maxallocmat; 14703966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 14713966268fSBarry Smith info->nz_unneeded = (a->maxallocmat - a->sliidx[a->totalslices]); 14723966268fSBarry Smith info->assemblies = A->num_ass; 14733966268fSBarry Smith info->mallocs = A->info.mallocs; 14744dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 1475d4002b98SHong Zhang if (A->factortype) { 1476d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1477d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1478d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1479d4002b98SHong Zhang } else { 1480d4002b98SHong Zhang info->fill_ratio_given = 0; 1481d4002b98SHong Zhang info->fill_ratio_needed = 0; 1482d4002b98SHong Zhang info->factor_mallocs = 0; 1483d4002b98SHong Zhang } 14843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1485d4002b98SHong Zhang } 1486d4002b98SHong Zhang 1487d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is) 1488d71ae5a4SJacob Faibussowitsch { 1489d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1490d4002b98SHong Zhang PetscInt shift, i, k, l, low, high, t, ii, row, col, nrow; 1491d4002b98SHong Zhang PetscInt *cp, nonew = a->nonew, lastcol = -1; 1492d4002b98SHong Zhang MatScalar *vp, value; 14932d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 14942d1451d4SHong Zhang PetscBool inserted = PETSC_FALSE; 14952d1451d4SHong Zhang #endif 1496d4002b98SHong Zhang 1497d4002b98SHong Zhang PetscFunctionBegin; 1498d4002b98SHong Zhang for (k = 0; k < m; k++) { /* loop over added rows */ 1499d4002b98SHong Zhang row = im[k]; 1500d4002b98SHong Zhang if (row < 0) continue; 15016bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1); 1502*07e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */ 1503d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */ 1504d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */ 1505d4002b98SHong Zhang nrow = a->rlen[row]; 1506d4002b98SHong Zhang low = 0; 1507d4002b98SHong Zhang high = nrow; 1508d4002b98SHong Zhang 1509d4002b98SHong Zhang for (l = 0; l < n; l++) { /* loop over added columns */ 1510d4002b98SHong Zhang col = in[l]; 1511d4002b98SHong Zhang if (col < 0) continue; 15126bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1); 1513d4002b98SHong Zhang if (a->roworiented) { 1514d4002b98SHong Zhang value = v[l + k * n]; 1515d4002b98SHong Zhang } else { 1516d4002b98SHong Zhang value = v[k + l * m]; 1517d4002b98SHong Zhang } 1518d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1519d4002b98SHong Zhang 1520ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */ 1521d4002b98SHong Zhang if (col <= lastcol) low = 0; 1522d4002b98SHong Zhang else high = nrow; 1523d4002b98SHong Zhang lastcol = col; 1524d4002b98SHong Zhang while (high - low > 5) { 1525d4002b98SHong Zhang t = (low + high) / 2; 1526*07e43b41SHong Zhang if (*(cp + a->sliceheight * t) > col) high = t; 1527d4002b98SHong Zhang else low = t; 1528d4002b98SHong Zhang } 1529d4002b98SHong Zhang for (i = low; i < high; i++) { 1530*07e43b41SHong Zhang if (*(cp + a->sliceheight * i) > col) break; 1531*07e43b41SHong Zhang if (*(cp + a->sliceheight * i) == col) { 1532*07e43b41SHong Zhang if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value; 1533*07e43b41SHong Zhang else *(vp + a->sliceheight * i) = value; 15342d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 15352d1451d4SHong Zhang inserted = PETSC_TRUE; 15362d1451d4SHong Zhang #endif 1537d4002b98SHong Zhang low = i + 1; 1538d4002b98SHong Zhang goto noinsert; 1539d4002b98SHong Zhang } 1540d4002b98SHong Zhang } 1541d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1542d4002b98SHong Zhang if (nonew == 1) goto noinsert; 154308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1544d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1545*07e43b41SHong Zhang MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar); 1546d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1547d4002b98SHong Zhang for (ii = nrow - 1; ii >= i; ii--) { 1548*07e43b41SHong Zhang *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii); 1549*07e43b41SHong Zhang *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii); 1550d4002b98SHong Zhang } 1551d4002b98SHong Zhang a->rlen[row]++; 1552*07e43b41SHong Zhang *(cp + a->sliceheight * i) = col; 1553*07e43b41SHong Zhang *(vp + a->sliceheight * i) = value; 1554d4002b98SHong Zhang a->nz++; 1555d4002b98SHong Zhang A->nonzerostate++; 15562d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 15572d1451d4SHong Zhang inserted = PETSC_TRUE; 15582d1451d4SHong Zhang #endif 15599371c9d4SSatish Balay low = i + 1; 15609371c9d4SSatish Balay high++; 15619371c9d4SSatish Balay nrow++; 1562d4002b98SHong Zhang noinsert:; 1563d4002b98SHong Zhang } 1564d4002b98SHong Zhang a->rlen[row] = nrow; 1565d4002b98SHong Zhang } 15662d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 15672d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU; 15682d1451d4SHong Zhang #endif 15693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1570d4002b98SHong Zhang } 1571d4002b98SHong Zhang 1572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str) 1573d71ae5a4SJacob Faibussowitsch { 1574d4002b98SHong Zhang PetscFunctionBegin; 1575d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1576d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1577d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1578d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 1579d4002b98SHong Zhang 158008401ef6SPierre Jolivet PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different"); 15819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices])); 1582d4002b98SHong Zhang } else { 15839566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 1584d4002b98SHong Zhang } 15853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1586d4002b98SHong Zhang } 1587d4002b98SHong Zhang 1588d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A) 1589d71ae5a4SJacob Faibussowitsch { 1590d4002b98SHong Zhang PetscFunctionBegin; 15919566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL)); 15923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1593d4002b98SHong Zhang } 1594d4002b98SHong Zhang 1595d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[]) 1596d71ae5a4SJacob Faibussowitsch { 1597d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1598d4002b98SHong Zhang 1599d4002b98SHong Zhang PetscFunctionBegin; 1600d4002b98SHong Zhang *array = a->val; 16013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1602d4002b98SHong Zhang } 1603d4002b98SHong Zhang 1604d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[]) 1605d71ae5a4SJacob Faibussowitsch { 1606d4002b98SHong Zhang PetscFunctionBegin; 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1608d4002b98SHong Zhang } 1609d4002b98SHong Zhang 1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_SeqSELL(Mat A) 1611d71ae5a4SJacob Faibussowitsch { 1612d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1613d4002b98SHong Zhang PetscInt i; 1614d4002b98SHong Zhang MatScalar *aval = a->val; 1615d4002b98SHong Zhang 1616d4002b98SHong Zhang PetscFunctionBegin; 1617d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscRealPart(aval[i]); 16182d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 16192d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU; 16202d1451d4SHong Zhang #endif 16213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1622d4002b98SHong Zhang } 1623d4002b98SHong Zhang 1624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1625d71ae5a4SJacob Faibussowitsch { 1626d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1627d4002b98SHong Zhang PetscInt i; 1628d4002b98SHong Zhang MatScalar *aval = a->val; 1629d4002b98SHong Zhang 1630d4002b98SHong Zhang PetscFunctionBegin; 1631d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 16329566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 16332d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 16342d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU; 16352d1451d4SHong Zhang #endif 16363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1637d4002b98SHong Zhang } 1638d4002b98SHong Zhang 1639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha) 1640d71ae5a4SJacob Faibussowitsch { 1641d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)inA->data; 1642d4002b98SHong Zhang MatScalar *aval = a->val; 1643d4002b98SHong Zhang PetscScalar oalpha = alpha; 1644d4002b98SHong Zhang PetscBLASInt one = 1, size; 1645d4002b98SHong Zhang 1646d4002b98SHong Zhang PetscFunctionBegin; 16479566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size)); 1648792fecdfSBarry Smith PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one)); 16499566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 16509566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(inA)); 16512d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 16522d1451d4SHong Zhang if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU; 16532d1451d4SHong Zhang #endif 16543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1655d4002b98SHong Zhang } 1656d4002b98SHong Zhang 1657d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a) 1658d71ae5a4SJacob Faibussowitsch { 1659d4002b98SHong Zhang Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data; 1660d4002b98SHong Zhang 1661d4002b98SHong Zhang PetscFunctionBegin; 166248a46eb9SPierre Jolivet if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL)); 16639566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 16643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1665d4002b98SHong Zhang } 1666d4002b98SHong Zhang 1667d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1668d71ae5a4SJacob Faibussowitsch { 1669d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1670d4002b98SHong Zhang PetscScalar *x, sum, *t; 1671f4259b30SLisandro Dalcin const MatScalar *idiag = NULL, *mdiag; 1672d4002b98SHong Zhang const PetscScalar *b, *xb; 1673d4002b98SHong Zhang PetscInt n, m = A->rmap->n, i, j, shift; 1674d4002b98SHong Zhang const PetscInt *diag; 1675d4002b98SHong Zhang 1676d4002b98SHong Zhang PetscFunctionBegin; 1677d4002b98SHong Zhang its = its * lits; 1678d4002b98SHong Zhang 1679d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 16809566063dSJacob Faibussowitsch if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A, omega, fshift)); 1681d4002b98SHong Zhang a->fshift = fshift; 1682d4002b98SHong Zhang a->omega = omega; 1683d4002b98SHong Zhang 1684d4002b98SHong Zhang diag = a->diag; 1685d4002b98SHong Zhang t = a->ssor_work; 1686d4002b98SHong Zhang idiag = a->idiag; 1687d4002b98SHong Zhang mdiag = a->mdiag; 1688d4002b98SHong Zhang 16899566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 16909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 1691d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 169208401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented"); 169308401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented"); 1694aed4548fSBarry Smith PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat"); 1695d4002b98SHong Zhang 1696d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1697d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1698d4002b98SHong Zhang for (i = 0; i < m; i++) { 1699*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1700d4002b98SHong Zhang sum = b[i]; 1701*07e43b41SHong Zhang n = (diag[i] - shift) / a->sliceheight; 1702*07e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]]; 1703d4002b98SHong Zhang t[i] = sum; 1704d4002b98SHong Zhang x[i] = sum * idiag[i]; 1705d4002b98SHong Zhang } 1706d4002b98SHong Zhang xb = t; 17079566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1708d4002b98SHong Zhang } else xb = b; 1709d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1710d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) { 1711*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1712d4002b98SHong Zhang sum = xb[i]; 1713*07e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1; 1714*07e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]]; 1715d4002b98SHong Zhang if (xb == b) { 1716d4002b98SHong Zhang x[i] = sum * idiag[i]; 1717d4002b98SHong Zhang } else { 1718d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1719d4002b98SHong Zhang } 1720d4002b98SHong Zhang } 17219566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1722d4002b98SHong Zhang } 1723d4002b98SHong Zhang its--; 1724d4002b98SHong Zhang } 1725d4002b98SHong Zhang while (its--) { 1726d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1727d4002b98SHong Zhang for (i = 0; i < m; i++) { 1728d4002b98SHong Zhang /* lower */ 1729*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1730d4002b98SHong Zhang sum = b[i]; 1731*07e43b41SHong Zhang n = (diag[i] - shift) / a->sliceheight; 1732*07e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]]; 1733d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1734d4002b98SHong Zhang /* upper */ 1735*07e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1; 1736*07e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]]; 1737d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1738d4002b98SHong Zhang } 1739d4002b98SHong Zhang xb = t; 17409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 1741d4002b98SHong Zhang } else xb = b; 1742d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1743d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) { 1744*07e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1745d4002b98SHong Zhang sum = xb[i]; 1746d4002b98SHong Zhang if (xb == b) { 1747d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1748d4002b98SHong Zhang n = a->rlen[i]; 1749*07e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]]; 1750d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i]; 1751d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1752*07e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1; 1753*07e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]]; 1754d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1755d4002b98SHong Zhang } 1756d4002b98SHong Zhang } 1757d4002b98SHong Zhang if (xb == b) { 17589566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 1759d4002b98SHong Zhang } else { 17609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1761d4002b98SHong Zhang } 1762d4002b98SHong Zhang } 1763d4002b98SHong Zhang } 17649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 17659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 17663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1767d4002b98SHong Zhang } 1768d4002b98SHong Zhang 1769d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17706108893eSStefano Zampini MatGetRow_SeqSELL, 17716108893eSStefano Zampini MatRestoreRow_SeqSELL, 1772d4002b98SHong Zhang MatMult_SeqSELL, 1773d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1774d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1775d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779f4259b30SLisandro Dalcin /* 10*/ NULL, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782d4002b98SHong Zhang MatSOR_SeqSELL, 1783f4259b30SLisandro Dalcin NULL, 1784d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1785d4002b98SHong Zhang MatEqual_SeqSELL, 1786d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1787d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin /* 20*/ NULL, 1790d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1791d4002b98SHong Zhang MatSetOption_SeqSELL, 1792d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1793f4259b30SLisandro Dalcin /* 24*/ NULL, 1794f4259b30SLisandro Dalcin NULL, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1799f4259b30SLisandro Dalcin NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 1803d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1804f4259b30SLisandro Dalcin NULL, 1805f4259b30SLisandro Dalcin NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin /* 39*/ NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811d4002b98SHong Zhang MatGetValues_SeqSELL, 1812d4002b98SHong Zhang MatCopy_SeqSELL, 1813f4259b30SLisandro Dalcin /* 44*/ NULL, 1814d4002b98SHong Zhang MatScale_SeqSELL, 1815d4002b98SHong Zhang MatShift_SeqSELL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin /* 49*/ NULL, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin /* 59*/ NULL, 1829d4002b98SHong Zhang MatDestroy_SeqSELL, 1830d4002b98SHong Zhang MatView_SeqSELL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin /* 64*/ NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin /* 69*/ NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin /* 74*/ NULL, 1844d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin /* 79*/ NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin /* 84*/ NULL, 1854f4259b30SLisandro Dalcin NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin /* 89*/ NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin /* 94*/ NULL, 1864f4259b30SLisandro Dalcin NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin /* 99*/ NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871d4002b98SHong Zhang MatConjugate_SeqSELL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin /*104*/ NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin /*109*/ NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1883f4259b30SLisandro Dalcin /*114*/ NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin /*119*/ NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin /*124*/ NULL, 1894f4259b30SLisandro Dalcin NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897f4259b30SLisandro Dalcin NULL, 1898f4259b30SLisandro Dalcin /*129*/ NULL, 1899f4259b30SLisandro Dalcin NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin /*134*/ NULL, 1904f4259b30SLisandro Dalcin NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908f4259b30SLisandro Dalcin /*139*/ NULL, 1909f4259b30SLisandro Dalcin NULL, 1910f4259b30SLisandro Dalcin NULL, 1911d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1912f4259b30SLisandro Dalcin NULL, 1913d70f29a3SPierre Jolivet /*144*/ NULL, 1914d70f29a3SPierre Jolivet NULL, 1915d70f29a3SPierre Jolivet NULL, 191699a7f59eSMark Adams NULL, 191799a7f59eSMark Adams NULL, 19187fb60732SBarry Smith NULL, 1919dec0b466SHong Zhang /*150*/ NULL, 1920dec0b466SHong Zhang NULL}; 1921d4002b98SHong Zhang 1922d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1923d71ae5a4SJacob Faibussowitsch { 1924d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1925d4002b98SHong Zhang 1926d4002b98SHong Zhang PetscFunctionBegin; 192728b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1928d4002b98SHong Zhang 1929d4002b98SHong Zhang /* allocate space for values if not already there */ 1930aa624791SPierre Jolivet if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values)); 1931d4002b98SHong Zhang 1932d4002b98SHong Zhang /* copy values over */ 19339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices])); 19343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1935d4002b98SHong Zhang } 1936d4002b98SHong Zhang 1937d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1938d71ae5a4SJacob Faibussowitsch { 1939d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1940d4002b98SHong Zhang 1941d4002b98SHong Zhang PetscFunctionBegin; 194228b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 194328b400f6SJacob Faibussowitsch PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first"); 19449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices])); 19453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1946d4002b98SHong Zhang } 1947d4002b98SHong Zhang 1948*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio) 1949*07e43b41SHong Zhang { 1950*07e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1951*07e43b41SHong Zhang 1952*07e43b41SHong Zhang PetscFunctionBegin; 1953*07e43b41SHong Zhang if (a->totalslices && a->sliidx[a->totalslices]) { 1954*07e43b41SHong Zhang *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices]; 1955*07e43b41SHong Zhang } else { 1956*07e43b41SHong Zhang *ratio = 0.0; 1957*07e43b41SHong Zhang } 1958*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 1959*07e43b41SHong Zhang } 1960*07e43b41SHong Zhang 1961*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth) 1962*07e43b41SHong Zhang { 1963*07e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1964*07e43b41SHong Zhang PetscInt i, current_slicewidth; 1965*07e43b41SHong Zhang 1966*07e43b41SHong Zhang PetscFunctionBegin; 1967*07e43b41SHong Zhang *slicewidth = 0; 1968*07e43b41SHong Zhang for (i = 0; i < a->totalslices; i++) { 1969*07e43b41SHong Zhang current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight; 1970*07e43b41SHong Zhang if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth; 1971*07e43b41SHong Zhang } 1972*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 1973*07e43b41SHong Zhang } 1974*07e43b41SHong Zhang 1975*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth) 1976*07e43b41SHong Zhang { 1977*07e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1978*07e43b41SHong Zhang 1979*07e43b41SHong Zhang PetscFunctionBegin; 1980*07e43b41SHong Zhang *slicewidth = 0; 1981*07e43b41SHong Zhang if (a->totalslices) { *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices; } 1982*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 1983*07e43b41SHong Zhang } 1984*07e43b41SHong Zhang 1985*07e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight) 1986*07e43b41SHong Zhang { 1987*07e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1988*07e43b41SHong Zhang 1989*07e43b41SHong Zhang PetscFunctionBegin; 1990*07e43b41SHong Zhang if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS); 1991*07e43b41SHong Zhang PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight); 1992*07e43b41SHong Zhang a->sliceheight = sliceheight; 1993*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 1994*07e43b41SHong Zhang } 1995*07e43b41SHong Zhang 1996d4002b98SHong Zhang /*@C 199711a5261eSBarry Smith MatSeqSELLRestoreArray - returns access to the array where the data for a `MATSEQSELL` matrix is stored obtained by `MatSeqSELLGetArray()` 1998d4002b98SHong Zhang 1999d4002b98SHong Zhang Not Collective 2000d4002b98SHong Zhang 2001d4002b98SHong Zhang Input Parameters: 2002*07e43b41SHong Zhang + A - a `MATSEQSELL` matrix 200320f4b53cSBarry Smith - array - pointer to the data 2004d4002b98SHong Zhang 2005d4002b98SHong Zhang Level: intermediate 2006d4002b98SHong Zhang 200767be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()` 2008d4002b98SHong Zhang @*/ 2009d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray(Mat A, PetscScalar **array) 2010d71ae5a4SJacob Faibussowitsch { 2011d4002b98SHong Zhang PetscFunctionBegin; 2012cac4c232SBarry Smith PetscUseMethod(A, "MatSeqSELLRestoreArray_C", (Mat, PetscScalar **), (A, array)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014d4002b98SHong Zhang } 2015d4002b98SHong Zhang 2016*07e43b41SHong Zhang /*@C 2017*07e43b41SHong Zhang MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix. 2018*07e43b41SHong Zhang 2019*07e43b41SHong Zhang Not Collective 2020*07e43b41SHong Zhang 2021*07e43b41SHong Zhang Input Parameter: 2022*07e43b41SHong Zhang . A - a MATSEQSELL matrix 2023*07e43b41SHong Zhang 2024*07e43b41SHong Zhang Output Parameter: 2025*07e43b41SHong Zhang . ratio - ratio of number of padded zeros to number of allocated elements 2026*07e43b41SHong Zhang 2027*07e43b41SHong Zhang Level: intermediate 2028*07e43b41SHong Zhang @*/ 2029*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio) 2030*07e43b41SHong Zhang { 2031*07e43b41SHong Zhang PetscFunctionBegin; 2032*07e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio)); 2033*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 2034*07e43b41SHong Zhang } 2035*07e43b41SHong Zhang 2036*07e43b41SHong Zhang /*@C 2037*07e43b41SHong Zhang MatSeqSELLGetMaxSliceWidth - returns the maximum slice width. 2038*07e43b41SHong Zhang 2039*07e43b41SHong Zhang Not Collective 2040*07e43b41SHong Zhang 2041*07e43b41SHong Zhang Input Parameter: 2042*07e43b41SHong Zhang . A - a MATSEQSELL matrix 2043*07e43b41SHong Zhang 2044*07e43b41SHong Zhang Output Parameter: 2045*07e43b41SHong Zhang . slicewidth - maximum slice width 2046*07e43b41SHong Zhang 2047*07e43b41SHong Zhang Level: intermediate 2048*07e43b41SHong Zhang @*/ 2049*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth) 2050*07e43b41SHong Zhang { 2051*07e43b41SHong Zhang PetscFunctionBegin; 2052*07e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth)); 2053*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 2054*07e43b41SHong Zhang } 2055*07e43b41SHong Zhang 2056*07e43b41SHong Zhang /*@C 2057*07e43b41SHong Zhang MatSeqSELLGetAvgSliceWidth - returns the average slice width. 2058*07e43b41SHong Zhang 2059*07e43b41SHong Zhang Not Collective 2060*07e43b41SHong Zhang 2061*07e43b41SHong Zhang Input Parameter: 2062*07e43b41SHong Zhang . A - a MATSEQSELL matrix 2063*07e43b41SHong Zhang 2064*07e43b41SHong Zhang Output Parameter: 2065*07e43b41SHong Zhang . slicewidth - average slice width 2066*07e43b41SHong Zhang 2067*07e43b41SHong Zhang Level: intermediate 2068*07e43b41SHong Zhang @*/ 2069*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth) 2070*07e43b41SHong Zhang { 2071*07e43b41SHong Zhang PetscFunctionBegin; 2072*07e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth)); 2073*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 2074*07e43b41SHong Zhang } 2075*07e43b41SHong Zhang 2076*07e43b41SHong Zhang /*@C 2077*07e43b41SHong Zhang MatSeqSELLSetSliceHeight - sets the slice height. 2078*07e43b41SHong Zhang 2079*07e43b41SHong Zhang Not Collective 2080*07e43b41SHong Zhang 2081*07e43b41SHong Zhang Input Parameters: 2082*07e43b41SHong Zhang + A - a MATSEQSELL matrix 2083*07e43b41SHong Zhang - sliceheight - slice height 2084*07e43b41SHong Zhang 2085*07e43b41SHong Zhang Notes: 2086*07e43b41SHong Zhang You cannot change the slice height once it have been set. 2087*07e43b41SHong Zhang 2088*07e43b41SHong Zhang The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called. 2089*07e43b41SHong Zhang 2090*07e43b41SHong Zhang Level: intermediate 2091*07e43b41SHong Zhang @*/ 2092*07e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight) 2093*07e43b41SHong Zhang { 2094*07e43b41SHong Zhang PetscFunctionBegin; 2095*07e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight)); 2096*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 2097*07e43b41SHong Zhang } 2098*07e43b41SHong Zhang 2099*07e43b41SHong Zhang /*@C 2100*07e43b41SHong Zhang MatSeqSELLGetVarSliceSize - returns the variance of the slice size. 2101*07e43b41SHong Zhang 2102*07e43b41SHong Zhang Not Collective 2103*07e43b41SHong Zhang 2104*07e43b41SHong Zhang Input Parameter: 2105*07e43b41SHong Zhang . A - a MATSEQSELL matrix 2106*07e43b41SHong Zhang 2107*07e43b41SHong Zhang Output Parameter: 2108*07e43b41SHong Zhang . variance - variance of the slice size 2109*07e43b41SHong Zhang 2110*07e43b41SHong Zhang Level: intermediate 2111*07e43b41SHong Zhang @*/ 2112*07e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance) 2113*07e43b41SHong Zhang { 2114*07e43b41SHong Zhang PetscFunctionBegin; 2115*07e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance)); 2116*07e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 2117*07e43b41SHong Zhang } 2118*07e43b41SHong Zhang 21192d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 21202d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat); 21212d1451d4SHong Zhang #endif 21222d1451d4SHong Zhang 2123d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 2124d71ae5a4SJacob Faibussowitsch { 2125d4002b98SHong Zhang Mat_SeqSELL *b; 2126d4002b98SHong Zhang PetscMPIInt size; 2127d4002b98SHong Zhang 2128d4002b98SHong Zhang PetscFunctionBegin; 21299566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(citation, &cited)); 21309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 213108401ef6SPierre Jolivet PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1"); 2132d4002b98SHong Zhang 21334dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2134d4002b98SHong Zhang 2135d4002b98SHong Zhang B->data = (void *)b; 2136d4002b98SHong Zhang 21379566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2138d4002b98SHong Zhang 2139f4259b30SLisandro Dalcin b->row = NULL; 2140f4259b30SLisandro Dalcin b->col = NULL; 2141f4259b30SLisandro Dalcin b->icol = NULL; 2142d4002b98SHong Zhang b->reallocs = 0; 2143d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 2144d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 2145d4002b98SHong Zhang b->nonew = 0; 2146f4259b30SLisandro Dalcin b->diag = NULL; 2147f4259b30SLisandro Dalcin b->solve_work = NULL; 2148f4259b30SLisandro Dalcin B->spptr = NULL; 2149f4259b30SLisandro Dalcin b->saved_values = NULL; 2150f4259b30SLisandro Dalcin b->idiag = NULL; 2151f4259b30SLisandro Dalcin b->mdiag = NULL; 2152f4259b30SLisandro Dalcin b->ssor_work = NULL; 2153d4002b98SHong Zhang b->omega = 1.0; 2154d4002b98SHong Zhang b->fshift = 0.0; 2155d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 2156d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 2157*07e43b41SHong Zhang b->sliceheight = 0; 2158d4002b98SHong Zhang 21599566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL)); 21609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL)); 21619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL)); 21629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL)); 21639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL)); 21649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL)); 21652d1451d4SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_SeqSELL_SeqAIJ_C", MatConvert_SeqSELL_SeqAIJ)); 21662d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 21672d1451d4SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_SeqSELL_SeqSELLCUDA_C", MatConvert_SeqSELL_SeqSELLCUDA)); 21682d1451d4SHong Zhang #endif 2169*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL)); 2170*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL)); 2171*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL)); 2172*07e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL)); 2173*07e43b41SHong Zhang 2174*07e43b41SHong Zhang PetscObjectOptionsBegin((PetscObject)B); 2175*07e43b41SHong Zhang { 2176*07e43b41SHong Zhang PetscInt newsh = -1; 2177*07e43b41SHong Zhang PetscBool flg; 2178*07e43b41SHong Zhang 2179*07e43b41SHong Zhang PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg)); 2180*07e43b41SHong Zhang if (flg) { PetscCall(MatSeqSELLSetSliceHeight(B, newsh)); } 2181*07e43b41SHong Zhang } 2182*07e43b41SHong Zhang PetscOptionsEnd(); 21833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2184d4002b98SHong Zhang } 2185d4002b98SHong Zhang 2186d4002b98SHong Zhang /* 2187d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 2188d4002b98SHong Zhang */ 2189d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace) 2190d71ae5a4SJacob Faibussowitsch { 2191ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data; 2192d4002b98SHong Zhang PetscInt i, m = A->rmap->n; 2193d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 2194d4002b98SHong Zhang 2195d4002b98SHong Zhang PetscFunctionBegin; 2196d4002b98SHong Zhang C->factortype = A->factortype; 2197f4259b30SLisandro Dalcin c->row = NULL; 2198f4259b30SLisandro Dalcin c->col = NULL; 2199f4259b30SLisandro Dalcin c->icol = NULL; 2200d4002b98SHong Zhang c->reallocs = 0; 2201d4002b98SHong Zhang C->assembled = PETSC_TRUE; 2202d4002b98SHong Zhang 22039566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &C->rmap)); 22049566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &C->cmap)); 2205d4002b98SHong Zhang 2206*07e43b41SHong Zhang PetscCall(PetscMalloc1(a->sliceheight * totalslices, &c->rlen)); 22079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx)); 2208d4002b98SHong Zhang 2209d4002b98SHong Zhang for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i]; 2210d4002b98SHong Zhang for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i]; 2211d4002b98SHong Zhang 2212d4002b98SHong Zhang /* allocate the matrix space */ 2213d4002b98SHong Zhang if (mallocmatspace) { 22149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx)); 2215d4002b98SHong Zhang 2216d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2217d4002b98SHong Zhang 2218d4002b98SHong Zhang if (m > 0) { 22199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat)); 2220d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 22219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat)); 2222d4002b98SHong Zhang } else { 22239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->val, a->maxallocmat)); 2224d4002b98SHong Zhang } 2225d4002b98SHong Zhang } 2226d4002b98SHong Zhang } 2227d4002b98SHong Zhang 2228d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2229d4002b98SHong Zhang c->roworiented = a->roworiented; 2230d4002b98SHong Zhang c->nonew = a->nonew; 2231d4002b98SHong Zhang if (a->diag) { 22329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &c->diag)); 2233ad540459SPierre Jolivet for (i = 0; i < m; i++) c->diag[i] = a->diag[i]; 2234f4259b30SLisandro Dalcin } else c->diag = NULL; 2235d4002b98SHong Zhang 2236f4259b30SLisandro Dalcin c->solve_work = NULL; 2237f4259b30SLisandro Dalcin c->saved_values = NULL; 2238f4259b30SLisandro Dalcin c->idiag = NULL; 2239f4259b30SLisandro Dalcin c->ssor_work = NULL; 2240d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2241d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2242d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2243d4002b98SHong Zhang 2244d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2245d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2246d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2247d4002b98SHong Zhang c->nz = a->nz; 2248d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2249d4002b98SHong Zhang 2250d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2251d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2252d4002b98SHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist)); 22543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2255d4002b98SHong Zhang } 2256d4002b98SHong Zhang 2257d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B) 2258d71ae5a4SJacob Faibussowitsch { 2259d4002b98SHong Zhang PetscFunctionBegin; 22609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B)); 22619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 226248a46eb9SPierre Jolivet if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A)); 22639566063dSJacob Faibussowitsch PetscCall(MatSetType(*B, ((PetscObject)A)->type_name)); 22649566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE)); 22653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2266d4002b98SHong Zhang } 2267d4002b98SHong Zhang 2268ed73aabaSBarry Smith /*MC 2269ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices, 2270ed73aabaSBarry Smith based on the sliced Ellpack format 2271ed73aabaSBarry Smith 227220f4b53cSBarry Smith Options Database Key: 227311a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()` 2274ed73aabaSBarry Smith 2275ed73aabaSBarry Smith Level: beginner 2276ed73aabaSBarry Smith 227767be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 2278ed73aabaSBarry Smith M*/ 2279ed73aabaSBarry Smith 2280ed73aabaSBarry Smith /*MC 2281ed73aabaSBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 2282ed73aabaSBarry Smith 228311a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 228411a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 228511a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 2286ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 2287ed73aabaSBarry Smith the above preallocation routines for simplicity. 2288ed73aabaSBarry Smith 228920f4b53cSBarry Smith Options Database Key: 2290ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 2291ed73aabaSBarry Smith 2292ed73aabaSBarry Smith Level: beginner 2293ed73aabaSBarry Smith 2294ed73aabaSBarry Smith Notes: 2295ed73aabaSBarry Smith This format is only supported for real scalars, double precision, and 32 bit indices (the defaults). 2296ed73aabaSBarry Smith 2297ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of 2298ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement. 2299ed73aabaSBarry Smith 2300ed73aabaSBarry Smith Developer Notes: 2301ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance. 2302ed73aabaSBarry Smith 2303ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8 2304ed73aabaSBarry Smith .vb 2305ed73aabaSBarry Smith (2 0 3 4) 2306ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0) 2307ed73aabaSBarry Smith (0 0 7 8) 2308ed73aabaSBarry Smith (0 0 9 9) 2309ed73aabaSBarry Smith 2310ed73aabaSBarry Smith symbolically the Ellpack format can be written as 2311ed73aabaSBarry Smith 2312ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |) 2313ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |) 2314ed73aabaSBarry Smith -------- --------- 2315ed73aabaSBarry Smith (7 8 |) (2 3 |) 2316ed73aabaSBarry Smith (9 9 |) (2 3 |) 2317ed73aabaSBarry Smith 2318ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case). 2319ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and 2320ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice. 2321ed73aabaSBarry Smith 2322ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3) 2323ed73aabaSBarry Smith 2324ed73aabaSBarry Smith .ve 2325ed73aabaSBarry Smith 2326ed73aabaSBarry Smith See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance. 2327ed73aabaSBarry Smith 2328ed73aabaSBarry Smith References: 2329606c0280SSatish Balay . * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}, 2330ed73aabaSBarry Smith Proceedings of the 47th International Conference on Parallel Processing, 2018. 2331ed73aabaSBarry Smith 233267be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ` 2333ed73aabaSBarry Smith M*/ 2334ed73aabaSBarry Smith 2335d4002b98SHong Zhang /*@C 233611a5261eSBarry Smith MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format. 2337d4002b98SHong Zhang 23382ef1f0ffSBarry Smith Collective 2339d4002b98SHong Zhang 2340d4002b98SHong Zhang Input Parameters: 234111a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 2342d4002b98SHong Zhang . m - number of rows 2343d4002b98SHong Zhang . n - number of columns 234420f4b53cSBarry Smith . rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided 234520f4b53cSBarry Smith - rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL 2346d4002b98SHong Zhang 2347d4002b98SHong Zhang Output Parameter: 2348d4002b98SHong Zhang . A - the matrix 2349d4002b98SHong Zhang 235020f4b53cSBarry Smith Level: intermediate 235120f4b53cSBarry Smith 235220f4b53cSBarry Smith Notes: 235311a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2354f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 235511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 2356d4002b98SHong Zhang 235720f4b53cSBarry Smith Specify the preallocated storage with either `rlenmax` or `rlen` (not both). 235820f4b53cSBarry Smith Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory 235920f4b53cSBarry Smith allocation. 2360d4002b98SHong Zhang 236167be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL` 2362d4002b98SHong Zhang @*/ 236320f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A) 2364d71ae5a4SJacob Faibussowitsch { 2365d4002b98SHong Zhang PetscFunctionBegin; 23669566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 23679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 23689566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 236920f4b53cSBarry Smith PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen)); 23703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2371d4002b98SHong Zhang } 2372d4002b98SHong Zhang 2373d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg) 2374d71ae5a4SJacob Faibussowitsch { 2375d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data; 2376d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 2377d4002b98SHong Zhang 2378d4002b98SHong Zhang PetscFunctionBegin; 2379d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2380d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2381d4002b98SHong Zhang *flg = PETSC_FALSE; 23823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2383d4002b98SHong Zhang } 2384d4002b98SHong Zhang /* if the a->colidx are the same */ 23859566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg)); 23863ba16761SJacob Faibussowitsch if (!*flg) PetscFunctionReturn(PETSC_SUCCESS); 2387d4002b98SHong Zhang /* if a->val are the same */ 23889566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg)); 23893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2390d4002b98SHong Zhang } 2391d4002b98SHong Zhang 2392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2393d71ae5a4SJacob Faibussowitsch { 2394d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2395d4002b98SHong Zhang 2396d4002b98SHong Zhang PetscFunctionBegin; 2397d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 23983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2399d4002b98SHong Zhang } 2400d4002b98SHong Zhang 2401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A) 2402d71ae5a4SJacob Faibussowitsch { 2403d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2404d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2405d4002b98SHong Zhang PetscInt i; 2406d4002b98SHong Zhang PetscScalar *val = a->val; 2407d4002b98SHong Zhang 2408d4002b98SHong Zhang PetscFunctionBegin; 24092d1451d4SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { val[i] = PetscConj(val[i]); } 24102d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 24112d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU; 24122d1451d4SHong Zhang #endif 2413d4002b98SHong Zhang #else 2414d4002b98SHong Zhang PetscFunctionBegin; 2415d4002b98SHong Zhang #endif 24163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2417d4002b98SHong Zhang } 2418