1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8ed73aabaSBarry Smith 9ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE; 10ed73aabaSBarry Smith static const char citation[] = 11ed73aabaSBarry Smith "@inproceedings{ZhangELLPACK2018,\n" 12ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n" 13ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n" 14ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n" 15ed73aabaSBarry Smith " year = 2018\n" 16ed73aabaSBarry Smith "}\n"; 17ed73aabaSBarry Smith 185f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 194243e2ceSHong Zhang 20d4002b98SHong Zhang #include <immintrin.h> 21d4002b98SHong Zhang 22d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 23d4002b98SHong Zhang #define _MM_SCALE_8 8 24d4002b98SHong Zhang #endif 25d4002b98SHong Zhang 26d4002b98SHong Zhang #if defined(__AVX512F__) 27d4002b98SHong Zhang /* these do not work 28d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 29d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 30d4002b98SHong Zhang */ 31d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 32d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 33ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const*)acolidx); \ 34ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 35d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 36a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y) 375f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 38a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 39ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 40ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const*)acolidx); /* SSE2 */ \ 41a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \ 42a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x,vec_vals,vec_y) 43d4002b98SHong Zhang #endif 44d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 45d4002b98SHong Zhang 46d4002b98SHong Zhang /*@C 47d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 48d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 49d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 50d4002b98SHong Zhang during matrix assembly can be increased significantly. 51d4002b98SHong Zhang 52d083f849SBarry Smith Collective 53d4002b98SHong Zhang 54d4002b98SHong Zhang Input Parameters: 55d4002b98SHong Zhang + B - The matrix 56d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 57d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 58d4002b98SHong Zhang (possibly different for each row) or NULL 59d4002b98SHong Zhang 60d4002b98SHong Zhang Notes: 61d4002b98SHong Zhang If nnz is given then nz is ignored. 62d4002b98SHong Zhang 63d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 64d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 65d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 66d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 67d4002b98SHong Zhang 68d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 69d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 70d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 71d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 72d4002b98SHong Zhang 73d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 74d4002b98SHong Zhang entries or columns indices. 75d4002b98SHong Zhang 76c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 77c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 78d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 79d4002b98SHong Zhang 80d4002b98SHong Zhang Level: intermediate 81d4002b98SHong Zhang 82d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 83d4002b98SHong Zhang 84d4002b98SHong Zhang @*/ 85d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 86d4002b98SHong Zhang { 87d4002b98SHong Zhang PetscErrorCode ierr; 88d4002b98SHong Zhang 89d4002b98SHong Zhang PetscFunctionBegin; 90d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 91d4002b98SHong Zhang PetscValidType(B,1); 92d4002b98SHong Zhang ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr); 93d4002b98SHong Zhang PetscFunctionReturn(0); 94d4002b98SHong Zhang } 95d4002b98SHong Zhang 96d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 97d4002b98SHong Zhang { 98d4002b98SHong Zhang Mat_SeqSELL *b; 99d4002b98SHong Zhang PetscInt i,j,totalslices; 100d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 101d4002b98SHong Zhang PetscErrorCode ierr; 102d4002b98SHong Zhang 103d4002b98SHong Zhang PetscFunctionBegin; 104d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 105d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 106d4002b98SHong Zhang skipallocation = PETSC_TRUE; 107d4002b98SHong Zhang maxallocrow = 0; 108d4002b98SHong Zhang } 109d4002b98SHong Zhang 110d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 111d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 112d4002b98SHong Zhang 113d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 114d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 115*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(maxallocrow < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %" PetscInt_FMT,maxallocrow); 116d4002b98SHong Zhang if (rlen) { 117d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 118*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(rlen[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,rlen[i]); 119*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(rlen[i] > B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT,i,rlen[i],B->cmap->n); 120d4002b98SHong Zhang } 121d4002b98SHong Zhang } 122d4002b98SHong Zhang 123d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 124d4002b98SHong Zhang 125d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 126d4002b98SHong Zhang 127faa75363SBarry Smith totalslices = PetscCeilInt(B->rmap->n,8); 128d4002b98SHong Zhang b->totalslices = totalslices; 129d4002b98SHong Zhang if (!skipallocation) { 1307d3de750SJacob Faibussowitsch if (B->rmap->n & 0x07) {ierr = PetscInfo(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %" PetscInt_FMT ")\n",B->rmap->n);CHKERRQ(ierr);} 131d4002b98SHong Zhang 132d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 133d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr); 134d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 135d4002b98SHong Zhang } 136d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 137d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 138d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 139d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 140d4002b98SHong Zhang } else { 141d4002b98SHong Zhang maxallocrow = 0; 142d4002b98SHong Zhang b->sliidx[0] = 0; 143d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 144d4002b98SHong Zhang b->sliidx[i] = 0; 145d4002b98SHong Zhang for (j=0;j<8;j++) { 146d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 147d4002b98SHong Zhang } 148d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 149c73702f5SBarry Smith ierr = PetscIntSumError(b->sliidx[i-1],8*b->sliidx[i],&b->sliidx[i]);CHKERRQ(ierr); 150d4002b98SHong Zhang } 151d4002b98SHong Zhang /* last slice */ 152d4002b98SHong Zhang b->sliidx[totalslices] = 0; 153d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 154d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 155d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 156d4002b98SHong Zhang } 157d4002b98SHong Zhang 158d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 159d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 160d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr); 161d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 162d4002b98SHong Zhang ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr); 163d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 164d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 165d4002b98SHong Zhang ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr); 166d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr); 167d4002b98SHong Zhang 168d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 169d4002b98SHong Zhang b->free_val = PETSC_TRUE; 170d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 171d4002b98SHong Zhang } else { 172d4002b98SHong Zhang b->free_val = PETSC_FALSE; 173d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 174d4002b98SHong Zhang } 175d4002b98SHong Zhang 176d4002b98SHong Zhang b->nz = 0; 177d4002b98SHong Zhang b->maxallocrow = maxallocrow; 178d4002b98SHong Zhang b->rlenmax = maxallocrow; 179d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 180d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 181d4002b98SHong Zhang if (realalloc) { 182d4002b98SHong Zhang ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 183d4002b98SHong Zhang } 184d4002b98SHong Zhang PetscFunctionReturn(0); 185d4002b98SHong Zhang } 186d4002b98SHong Zhang 1876108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1886108893eSStefano Zampini { 1896108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL*)A->data; 1906108893eSStefano Zampini PetscInt shift; 1916108893eSStefano Zampini 1926108893eSStefano Zampini PetscFunctionBegin; 193*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(row < 0 || row >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range",row); 1946108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1956108893eSStefano Zampini shift = a->sliidx[row>>3]+(row&0x07); 1966108893eSStefano Zampini if (!a->getrowcols) { 1976108893eSStefano Zampini PetscErrorCode ierr; 1986108893eSStefano Zampini 1996108893eSStefano Zampini ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr); 2006108893eSStefano Zampini } 2016108893eSStefano Zampini if (idx) { 2026108893eSStefano Zampini PetscInt j; 2036108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j]; 2046108893eSStefano Zampini *idx = a->getrowcols; 2056108893eSStefano Zampini } 2066108893eSStefano Zampini if (v) { 2076108893eSStefano Zampini PetscInt j; 2086108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j]; 2096108893eSStefano Zampini *v = a->getrowvals; 2106108893eSStefano Zampini } 2116108893eSStefano Zampini PetscFunctionReturn(0); 2126108893eSStefano Zampini } 2136108893eSStefano Zampini 2146108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 2156108893eSStefano Zampini { 2166108893eSStefano Zampini PetscFunctionBegin; 2176108893eSStefano Zampini PetscFunctionReturn(0); 2186108893eSStefano Zampini } 2196108893eSStefano Zampini 220d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 221d4002b98SHong Zhang { 222d4002b98SHong Zhang Mat B; 223d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 224e3f1f374SStefano Zampini PetscInt i; 225d4002b98SHong Zhang PetscErrorCode ierr; 226d4002b98SHong Zhang 227d4002b98SHong Zhang PetscFunctionBegin; 228ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 229ad013a7bSRichard Tran Mills B = *newmat; 230e3f1f374SStefano Zampini ierr = MatZeroEntries(B);CHKERRQ(ierr); 231ad013a7bSRichard Tran Mills } else { 232d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 233d4002b98SHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 234d4002b98SHong Zhang ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 235d4002b98SHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr); 236ad013a7bSRichard Tran Mills } 237d4002b98SHong Zhang 238e3f1f374SStefano Zampini for (i=0; i<A->rmap->n; i++) { 239e108cb99SStefano Zampini PetscInt nz = 0,*cols = NULL; 240e108cb99SStefano Zampini PetscScalar *vals = NULL; 241e3f1f374SStefano Zampini 242e3f1f374SStefano Zampini ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 243e3f1f374SStefano Zampini ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 244e3f1f374SStefano Zampini ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 245d4002b98SHong Zhang } 246e3f1f374SStefano Zampini 247d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 248d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 249d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 250d4002b98SHong Zhang 251d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 252d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 253d4002b98SHong Zhang } else { 254d4002b98SHong Zhang *newmat = B; 255d4002b98SHong Zhang } 256d4002b98SHong Zhang PetscFunctionReturn(0); 257d4002b98SHong Zhang } 258d4002b98SHong Zhang 259d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 260d4002b98SHong Zhang 261d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 262d4002b98SHong Zhang { 263d4002b98SHong Zhang Mat B; 264d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 265d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 266d4002b98SHong Zhang const PetscInt *cols; 267d4002b98SHong Zhang const PetscScalar *vals; 268d4002b98SHong Zhang PetscErrorCode ierr; 269d4002b98SHong Zhang 270d4002b98SHong Zhang PetscFunctionBegin; 271ad013a7bSRichard Tran Mills 272ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 273ad013a7bSRichard Tran Mills B = *newmat; 274ad013a7bSRichard Tran Mills } else { 275d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 276d4002b98SHong Zhang ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr); 277d4002b98SHong Zhang for (i=0; i<m; i++) { 278d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 279d4002b98SHong Zhang } 280d5e5b2e5SBarry Smith } 281d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 282d5e5b2e5SBarry Smith PetscBool eq; 283d5e5b2e5SBarry Smith ierr = PetscMemcmp(rowlengths,a->ilen,m*sizeof(PetscInt),&eq);CHKERRQ(ierr); 284*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(!eq,PETSC_COMM_SELF,PETSC_ERR_PLIB,"SeqAIJ ilen array incorrect"); 285d5e5b2e5SBarry Smith ierr = PetscFree(rowlengths);CHKERRQ(ierr); 286d5e5b2e5SBarry Smith rowlengths = a->ilen; 287d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 288d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 289d4002b98SHong Zhang ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 290d4002b98SHong Zhang ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr); 291d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr); 292d5e5b2e5SBarry Smith if (rowlengths != a->ilen) {ierr = PetscFree(rowlengths);CHKERRQ(ierr);} 293ad013a7bSRichard Tran Mills } 294d4002b98SHong Zhang 295d4002b98SHong Zhang for (row=0; row<m; row++) { 296d5e5b2e5SBarry Smith ierr = MatGetRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals);CHKERRQ(ierr); 297d5e5b2e5SBarry Smith ierr = MatSetValues_SeqSELL(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 298d5e5b2e5SBarry Smith ierr = MatRestoreRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals);CHKERRQ(ierr); 299d4002b98SHong Zhang } 300d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 301d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 302d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 303d4002b98SHong Zhang 304d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 305d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 306d4002b98SHong Zhang } else { 307d4002b98SHong Zhang *newmat = B; 308d4002b98SHong Zhang } 309d4002b98SHong Zhang PetscFunctionReturn(0); 310d4002b98SHong Zhang } 311d4002b98SHong Zhang 312d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 313d4002b98SHong Zhang { 314d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 315d4002b98SHong Zhang PetscScalar *y; 316d4002b98SHong Zhang const PetscScalar *x; 317d4002b98SHong Zhang const MatScalar *aval=a->val; 318d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 319d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 3207285fed1SHong Zhang PetscInt i,j; 321d4002b98SHong Zhang PetscErrorCode ierr; 322d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 323d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 324d4002b98SHong Zhang __m256i vec_idx; 325d4002b98SHong Zhang __mmask8 mask; 326d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 327d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 3285f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 329a48a6482SHong Zhang __m128i vec_idx; 330a48a6482SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 331a48a6482SHong Zhang MatScalar yval; 332a48a6482SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 33321cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 334d4002b98SHong Zhang __m128d vec_x_tmp; 335d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 336d4002b98SHong Zhang MatScalar yval; 337d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 338d4002b98SHong Zhang #else 339d4002b98SHong Zhang PetscScalar sum[8]; 340d4002b98SHong Zhang #endif 341d4002b98SHong Zhang 342d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 343d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 344d4002b98SHong Zhang #endif 345d4002b98SHong Zhang 346d4002b98SHong Zhang PetscFunctionBegin; 347d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 348d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 349d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 350d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 351d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 352d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 353d4002b98SHong Zhang 354d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 355d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 356d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 357d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 358d4002b98SHong Zhang 35938efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 360d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 361d4002b98SHong Zhang case 3: 362d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 363d4002b98SHong Zhang acolidx += 8; aval += 8; 364d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 365d4002b98SHong Zhang acolidx += 8; aval += 8; 366d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 367d4002b98SHong Zhang acolidx += 8; aval += 8; 368d4002b98SHong Zhang j += 3; 369d4002b98SHong Zhang break; 370d4002b98SHong Zhang case 2: 371d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 372d4002b98SHong Zhang acolidx += 8; aval += 8; 373d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 374d4002b98SHong Zhang acolidx += 8; aval += 8; 375d4002b98SHong Zhang j += 2; 376d4002b98SHong Zhang break; 377d4002b98SHong Zhang case 1: 378d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 379d4002b98SHong Zhang acolidx += 8; aval += 8; 380d4002b98SHong Zhang j += 1; 381d4002b98SHong Zhang break; 382d4002b98SHong Zhang } 383d4002b98SHong Zhang #pragma novector 384d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 385d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 386d4002b98SHong Zhang acolidx += 8; aval += 8; 387d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 388d4002b98SHong Zhang acolidx += 8; aval += 8; 389d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 390d4002b98SHong Zhang acolidx += 8; aval += 8; 391d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 392d4002b98SHong Zhang acolidx += 8; aval += 8; 393d4002b98SHong Zhang } 394d4002b98SHong Zhang 395d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 396d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 397d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 398d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 399d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 400ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8*i],mask,vec_y); 401d4002b98SHong Zhang } else { 402ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8*i],vec_y); 403d4002b98SHong Zhang } 404d4002b98SHong Zhang } 4055f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 406a48a6482SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 407a48a6482SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 408a48a6482SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 409a48a6482SHong Zhang 410a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 411a48a6482SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 412a48a6482SHong Zhang rows_left = A->rmap->n - 8*i; 413a48a6482SHong Zhang for (r=0; r<rows_left; ++r) { 414a48a6482SHong Zhang yval = (MatScalar)0; 415a48a6482SHong Zhang row = 8*i + r; 416a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 417a48a6482SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 418a48a6482SHong Zhang y[row] = yval; 419a48a6482SHong Zhang } 420a48a6482SHong Zhang break; 421a48a6482SHong Zhang } 422a48a6482SHong Zhang 423a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 424a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 425a48a6482SHong Zhang 426a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 427a48a6482SHong Zhang #pragma novector 428a48a6482SHong Zhang #pragma unroll(2) 429a48a6482SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 430a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 431a48a6482SHong Zhang aval += 4; acolidx += 4; 432a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2); 433a48a6482SHong Zhang aval += 4; acolidx += 4; 434a48a6482SHong Zhang } 435a48a6482SHong Zhang 436ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8,vec_y); 437ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8+4,vec_y2); 438a48a6482SHong Zhang } 43921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 440d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 441d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 442d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 443d4002b98SHong Zhang 444d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 445d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 446d4002b98SHong Zhang 447d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 448d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 449d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 450d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 451d4002b98SHong Zhang yval = (MatScalar)0; 452d4002b98SHong Zhang row = 8*i + r; 453d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 454d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 455d4002b98SHong Zhang y[row] = yval; 456d4002b98SHong Zhang } 457d4002b98SHong Zhang break; 458d4002b98SHong Zhang } 459d4002b98SHong Zhang 460d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 461a48a6482SHong Zhang #pragma novector 462a48a6482SHong Zhang #pragma unroll(2) 4637285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 464d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 465d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 466d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 467d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 468d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 469d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 470d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 471d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 472d4002b98SHong Zhang aval += 4; 473d4002b98SHong Zhang 474d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 475d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 476d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 477d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 478d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 479d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 480d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 481d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 482d4002b98SHong Zhang aval += 4; 483d4002b98SHong Zhang } 484d4002b98SHong Zhang 485d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 486d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 487d4002b98SHong Zhang } 488d4002b98SHong Zhang #else 489d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 490d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 491d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 492d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 493d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 494d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 495d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 496d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 497d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 498d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 499d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 500d4002b98SHong Zhang } 501d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 502d4002b98SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 503d4002b98SHong Zhang } else { 5047285fed1SHong Zhang for (j=0; j<8; j++) y[8*i+j] = sum[j]; 505d4002b98SHong Zhang } 506d4002b98SHong Zhang } 507d4002b98SHong Zhang #endif 508d4002b98SHong Zhang 509d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */ 510d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 511d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 512d4002b98SHong Zhang PetscFunctionReturn(0); 513d4002b98SHong Zhang } 514d4002b98SHong Zhang 515d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 516d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 517d4002b98SHong Zhang { 518d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 519d4002b98SHong Zhang PetscScalar *y,*z; 520d4002b98SHong Zhang const PetscScalar *x; 521d4002b98SHong Zhang const MatScalar *aval=a->val; 522d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 523d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 524d4002b98SHong Zhang PetscInt i,j; 525d4002b98SHong Zhang PetscErrorCode ierr; 526d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5277285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 528d4002b98SHong Zhang __m256i vec_idx; 529d4002b98SHong Zhang __mmask8 mask; 5307285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 5317285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 53221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5337285fed1SHong Zhang __m128d vec_x_tmp; 5347285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 5357285fed1SHong Zhang MatScalar yval; 5367285fed1SHong Zhang PetscInt r,row,nnz_in_row; 537d4002b98SHong Zhang #else 538d4002b98SHong Zhang PetscScalar sum[8]; 539d4002b98SHong Zhang #endif 540d4002b98SHong Zhang 541d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 542d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 543d4002b98SHong Zhang #endif 544d4002b98SHong Zhang 545d4002b98SHong Zhang PetscFunctionBegin; 546d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 547d4002b98SHong Zhang ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 548d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5497285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5507285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5517285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5527285fed1SHong Zhang 553d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 554d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 555ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y,mask,&y[8*i]); 5567285fed1SHong Zhang } else { 557ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8*i]); 5587285fed1SHong Zhang } 5597285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5607285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5617285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5627285fed1SHong Zhang 5637285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5647285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 5657285fed1SHong Zhang case 3: 5667285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5677285fed1SHong Zhang acolidx += 8; aval += 8; 5687285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5697285fed1SHong Zhang acolidx += 8; aval += 8; 5707285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5717285fed1SHong Zhang acolidx += 8; aval += 8; 5727285fed1SHong Zhang j += 3; 5737285fed1SHong Zhang break; 5747285fed1SHong Zhang case 2: 5757285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5767285fed1SHong Zhang acolidx += 8; aval += 8; 5777285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5787285fed1SHong Zhang acolidx += 8; aval += 8; 5797285fed1SHong Zhang j += 2; 5807285fed1SHong Zhang break; 5817285fed1SHong Zhang case 1: 5827285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5837285fed1SHong Zhang acolidx += 8; aval += 8; 5847285fed1SHong Zhang j += 1; 5857285fed1SHong Zhang break; 5867285fed1SHong Zhang } 5877285fed1SHong Zhang #pragma novector 5887285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 5897285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5907285fed1SHong Zhang acolidx += 8; aval += 8; 5917285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5927285fed1SHong Zhang acolidx += 8; aval += 8; 5937285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5947285fed1SHong Zhang acolidx += 8; aval += 8; 5957285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5967285fed1SHong Zhang acolidx += 8; aval += 8; 5977285fed1SHong Zhang } 5987285fed1SHong Zhang 5997285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 6007285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 6017285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 6027285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 603ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8*i],mask,vec_y); 604d4002b98SHong Zhang } else { 605ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8*i],vec_y); 606d4002b98SHong Zhang } 6077285fed1SHong Zhang } 60821cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 6097285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 6107285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6117285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6127285fed1SHong Zhang 6137285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6147285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6157285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6167285fed1SHong Zhang row = 8*i + r; 6177285fed1SHong Zhang yval = (MatScalar)0.0; 6187285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6197285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 6207285fed1SHong Zhang z[row] = y[row] + yval; 6217285fed1SHong Zhang } 6227285fed1SHong Zhang break; 6237285fed1SHong Zhang } 6247285fed1SHong Zhang 6257285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 6267285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 6277285fed1SHong Zhang 6287285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6297285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6307285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6317285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6327285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6337285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6347285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6357285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6367285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6377285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 6387285fed1SHong Zhang aval += 4; 6397285fed1SHong Zhang 6407285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6417285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6427285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6437285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6447285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6457285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6467285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6477285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 6487285fed1SHong Zhang aval += 4; 6497285fed1SHong Zhang } 6507285fed1SHong Zhang 6517285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 6527285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 6537285fed1SHong Zhang } 654d4002b98SHong Zhang #else 6557285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 6567285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 657d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 658d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 659d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 660d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 661d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 662d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 663d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 664d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 665d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 666d4002b98SHong Zhang } 6677285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6687285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 669d4002b98SHong Zhang } else { 6707285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 6717285fed1SHong Zhang } 672d4002b98SHong Zhang } 673d4002b98SHong Zhang #endif 674d4002b98SHong Zhang 675d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 676d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 677d4002b98SHong Zhang ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 678d4002b98SHong Zhang PetscFunctionReturn(0); 679d4002b98SHong Zhang } 680d4002b98SHong Zhang 681d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 682d4002b98SHong Zhang { 683d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 684d4002b98SHong Zhang PetscScalar *y; 685d4002b98SHong Zhang const PetscScalar *x; 686d4002b98SHong Zhang const MatScalar *aval=a->val; 687d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 6887285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 689d4002b98SHong Zhang PetscErrorCode ierr; 690d4002b98SHong Zhang 691d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 692d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 693d4002b98SHong Zhang #endif 694d4002b98SHong Zhang 695d4002b98SHong Zhang PetscFunctionBegin; 6969fc32365SStefano Zampini if (A->symmetric) { 6979fc32365SStefano Zampini ierr = MatMultAdd_SeqSELL(A,xx,zz,yy);CHKERRQ(ierr); 6989fc32365SStefano Zampini PetscFunctionReturn(0); 6999fc32365SStefano Zampini } 700d4002b98SHong Zhang if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); } 701d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 702d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 703d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 7047285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 7057285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 7067285fed1SHong Zhang row = 8*i + r; 7077285fed1SHong Zhang nnz_in_row = a->rlen[row]; 7087285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 7097285fed1SHong Zhang } 7107285fed1SHong Zhang break; 7117285fed1SHong Zhang } 7127285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 7137285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 7147285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 7157285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 7167285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 7177285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 7187285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 7197285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 7207285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 721d4002b98SHong Zhang } 722d4002b98SHong Zhang } 723d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr); 724d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 725d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 726d4002b98SHong Zhang PetscFunctionReturn(0); 727d4002b98SHong Zhang } 728d4002b98SHong Zhang 729d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 730d4002b98SHong Zhang { 731d4002b98SHong Zhang PetscErrorCode ierr; 732d4002b98SHong Zhang 733d4002b98SHong Zhang PetscFunctionBegin; 7349fc32365SStefano Zampini if (A->symmetric) { 7359fc32365SStefano Zampini ierr = MatMult_SeqSELL(A,xx,yy);CHKERRQ(ierr); 7369fc32365SStefano Zampini } else { 737d4002b98SHong Zhang ierr = VecSet(yy,0.0);CHKERRQ(ierr); 738d4002b98SHong Zhang ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr); 7399fc32365SStefano Zampini } 740d4002b98SHong Zhang PetscFunctionReturn(0); 741d4002b98SHong Zhang } 742d4002b98SHong Zhang 743d4002b98SHong Zhang /* 744d4002b98SHong Zhang Checks for missing diagonals 745d4002b98SHong Zhang */ 746d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 747d4002b98SHong Zhang { 748d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 749d4002b98SHong Zhang PetscInt *diag,i; 750994fe344SLisandro Dalcin PetscErrorCode ierr; 751d4002b98SHong Zhang 752d4002b98SHong Zhang PetscFunctionBegin; 753d4002b98SHong Zhang *missing = PETSC_FALSE; 754d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 755d4002b98SHong Zhang *missing = PETSC_TRUE; 756d4002b98SHong Zhang if (d) *d = 0; 757994fe344SLisandro Dalcin ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr); 758d4002b98SHong Zhang } else { 759d4002b98SHong Zhang diag = a->diag; 760d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 761d4002b98SHong Zhang if (diag[i] == -1) { 762d4002b98SHong Zhang *missing = PETSC_TRUE; 763d4002b98SHong Zhang if (d) *d = i; 7647d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Matrix is missing diagonal number %" PetscInt_FMT "\n",i);CHKERRQ(ierr); 765d4002b98SHong Zhang break; 766d4002b98SHong Zhang } 767d4002b98SHong Zhang } 768d4002b98SHong Zhang } 769d4002b98SHong Zhang PetscFunctionReturn(0); 770d4002b98SHong Zhang } 771d4002b98SHong Zhang 772d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 773d4002b98SHong Zhang { 774d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 775d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 776d4002b98SHong Zhang PetscErrorCode ierr; 777d4002b98SHong Zhang 778d4002b98SHong Zhang PetscFunctionBegin; 779d4002b98SHong Zhang if (!a->diag) { 780d4002b98SHong Zhang ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 781d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 782d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 783d4002b98SHong Zhang } 784d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 785d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 786d4002b98SHong Zhang a->diag[i] = -1; 787d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 788d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 789d4002b98SHong Zhang a->diag[i] = shift+j*8; 790d4002b98SHong Zhang break; 791d4002b98SHong Zhang } 792d4002b98SHong Zhang } 793d4002b98SHong Zhang } 794d4002b98SHong Zhang PetscFunctionReturn(0); 795d4002b98SHong Zhang } 796d4002b98SHong Zhang 797d4002b98SHong Zhang /* 798d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 799d4002b98SHong Zhang */ 800d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 801d4002b98SHong Zhang { 802d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 803d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 804d4002b98SHong Zhang MatScalar *val = a->val; 805d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 806d4002b98SHong Zhang PetscErrorCode ierr; 807d4002b98SHong Zhang 808d4002b98SHong Zhang PetscFunctionBegin; 809d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 810d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 811d4002b98SHong Zhang diag = a->diag; 812d4002b98SHong Zhang if (!a->idiag) { 813d4002b98SHong Zhang ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr); 814d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr); 815d4002b98SHong Zhang val = a->val; 816d4002b98SHong Zhang } 817d4002b98SHong Zhang mdiag = a->mdiag; 818d4002b98SHong Zhang idiag = a->idiag; 819d4002b98SHong Zhang 820d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 821d4002b98SHong Zhang for (i=0; i<m; i++) { 822d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 823d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 824d4002b98SHong Zhang if (PetscRealPart(fshift)) { 8257d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Zero diagonal on row %" PetscInt_FMT "\n",i);CHKERRQ(ierr); 826d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 827d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 828d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 82998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %" PetscInt_FMT,i); 830d4002b98SHong Zhang } 831d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 832d4002b98SHong Zhang } 833d4002b98SHong Zhang ierr = PetscLogFlops(m);CHKERRQ(ierr); 834d4002b98SHong Zhang } else { 835d4002b98SHong Zhang for (i=0; i<m; i++) { 836d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 837d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 838d4002b98SHong Zhang } 839d4002b98SHong Zhang ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr); 840d4002b98SHong Zhang } 841d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 842d4002b98SHong Zhang PetscFunctionReturn(0); 843d4002b98SHong Zhang } 844d4002b98SHong Zhang 845d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 846d4002b98SHong Zhang { 847d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 848d4002b98SHong Zhang PetscErrorCode ierr; 849d4002b98SHong Zhang 850d4002b98SHong Zhang PetscFunctionBegin; 851580bdb30SBarry Smith ierr = PetscArrayzero(a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr); 852d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 853d4002b98SHong Zhang PetscFunctionReturn(0); 854d4002b98SHong Zhang } 855d4002b98SHong Zhang 856d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 857d4002b98SHong Zhang { 858d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 859d4002b98SHong Zhang PetscErrorCode ierr; 860d4002b98SHong Zhang 861d4002b98SHong Zhang PetscFunctionBegin; 862d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 863c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->n,A->cmap->n,a->nz); 864d4002b98SHong Zhang #endif 865d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr); 866d4002b98SHong Zhang ierr = ISDestroy(&a->row);CHKERRQ(ierr); 867d4002b98SHong Zhang ierr = ISDestroy(&a->col);CHKERRQ(ierr); 868d4002b98SHong Zhang ierr = PetscFree(a->diag);CHKERRQ(ierr); 869d4002b98SHong Zhang ierr = PetscFree(a->rlen);CHKERRQ(ierr); 870d4002b98SHong Zhang ierr = PetscFree(a->sliidx);CHKERRQ(ierr); 871d4002b98SHong Zhang ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr); 872d4002b98SHong Zhang ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 873d4002b98SHong Zhang ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 874d4002b98SHong Zhang ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 8756108893eSStefano Zampini ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr); 876d4002b98SHong Zhang 877d4002b98SHong Zhang ierr = PetscFree(A->data);CHKERRQ(ierr); 878d4002b98SHong Zhang 879f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)A,NULL);CHKERRQ(ierr); 880d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 881d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 882d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr); 883d4002b98SHong Zhang PetscFunctionReturn(0); 884d4002b98SHong Zhang } 885d4002b98SHong Zhang 886d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 887d4002b98SHong Zhang { 888d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 889d4002b98SHong Zhang PetscErrorCode ierr; 890d4002b98SHong Zhang 891d4002b98SHong Zhang PetscFunctionBegin; 892d4002b98SHong Zhang switch (op) { 893d4002b98SHong Zhang case MAT_ROW_ORIENTED: 894d4002b98SHong Zhang a->roworiented = flg; 895d4002b98SHong Zhang break; 896d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 897d4002b98SHong Zhang a->keepnonzeropattern = flg; 898d4002b98SHong Zhang break; 899d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 900d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 901d4002b98SHong Zhang break; 902d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 903d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 904d4002b98SHong Zhang break; 905d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 906d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 907d4002b98SHong Zhang break; 908d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 909d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 910d4002b98SHong Zhang break; 9118c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 912d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 913d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 914071fcb05SBarry Smith case MAT_SORTED_FULL: 9157d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 916d4002b98SHong Zhang break; 917d4002b98SHong Zhang case MAT_SPD: 918d4002b98SHong Zhang case MAT_SYMMETRIC: 919d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 920d4002b98SHong Zhang case MAT_HERMITIAN: 921d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 922d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 923d4002b98SHong Zhang break; 924d4002b98SHong Zhang default: 92598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 926d4002b98SHong Zhang } 927d4002b98SHong Zhang PetscFunctionReturn(0); 928d4002b98SHong Zhang } 929d4002b98SHong Zhang 930d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 931d4002b98SHong Zhang { 932d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 933d4002b98SHong Zhang PetscInt i,j,n,shift; 934d4002b98SHong Zhang PetscScalar *x,zero=0.0; 935d4002b98SHong Zhang PetscErrorCode ierr; 936d4002b98SHong Zhang 937d4002b98SHong Zhang PetscFunctionBegin; 938d4002b98SHong Zhang ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 939*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 940d4002b98SHong Zhang 941d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 942d4002b98SHong Zhang PetscInt *diag=a->diag; 943d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 944d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 945d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 946d4002b98SHong Zhang PetscFunctionReturn(0); 947d4002b98SHong Zhang } 948d4002b98SHong Zhang 949d4002b98SHong Zhang ierr = VecSet(v,zero);CHKERRQ(ierr); 950d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 951d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 952d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 953d4002b98SHong Zhang x[i] = 0; 954d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 955d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 956d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 957d4002b98SHong Zhang break; 958d4002b98SHong Zhang } 959d4002b98SHong Zhang } 960d4002b98SHong Zhang } 961d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 962d4002b98SHong Zhang PetscFunctionReturn(0); 963d4002b98SHong Zhang } 964d4002b98SHong Zhang 965d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 966d4002b98SHong Zhang { 967d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 968d4002b98SHong Zhang const PetscScalar *l,*r; 969d4002b98SHong Zhang PetscInt i,j,m,n,row; 970d4002b98SHong Zhang PetscErrorCode ierr; 971d4002b98SHong Zhang 972d4002b98SHong Zhang PetscFunctionBegin; 973d4002b98SHong Zhang if (ll) { 974d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 975d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 976d4002b98SHong Zhang ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr); 977*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(m != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 978d4002b98SHong Zhang ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 979d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 980dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 981dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 982dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= l[8*i+row]; 983dab86139SHong Zhang } 984dab86139SHong Zhang } else { 985d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 986d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 987d4002b98SHong Zhang } 988d4002b98SHong Zhang } 989dab86139SHong Zhang } 990d4002b98SHong Zhang ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 991d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 992d4002b98SHong Zhang } 993d4002b98SHong Zhang if (rr) { 994d4002b98SHong Zhang ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr); 995*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 996d4002b98SHong Zhang ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 997d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 998dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 999dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 1000dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= r[a->colidx[j]]; 1001dab86139SHong Zhang } 1002dab86139SHong Zhang } else { 1003d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 1004d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 1005d4002b98SHong Zhang } 1006d4002b98SHong Zhang } 1007dab86139SHong Zhang } 1008d4002b98SHong Zhang ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 1009d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1010d4002b98SHong Zhang } 1011d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1012d4002b98SHong Zhang PetscFunctionReturn(0); 1013d4002b98SHong Zhang } 1014d4002b98SHong Zhang 1015d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1016d4002b98SHong Zhang { 1017d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1018d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 1019d4002b98SHong Zhang PetscInt shift; 1020d4002b98SHong Zhang MatScalar *vp; 1021d4002b98SHong Zhang 1022d4002b98SHong Zhang PetscFunctionBegin; 102368aafef3SStefano Zampini for (k=0; k<m; k++) { /* loop over requested rows */ 1024d4002b98SHong Zhang row = im[k]; 1025d4002b98SHong Zhang if (row<0) continue; 1026*2c71b3e2SJacob Faibussowitsch PetscAssertFalse(row >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1027d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1028d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1029d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 103068aafef3SStefano Zampini for (l=0; l<n; l++) { /* loop over requested columns */ 1031d4002b98SHong Zhang col = in[l]; 1032d4002b98SHong Zhang if (col<0) continue; 1033*2c71b3e2SJacob Faibussowitsch PetscAssertFalse(col >= A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1034d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 1035d4002b98SHong Zhang while (high-low > 5) { 1036d4002b98SHong Zhang t = (low+high)/2; 1037d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1038d4002b98SHong Zhang else low = t; 1039d4002b98SHong Zhang } 1040d4002b98SHong Zhang for (i=low; i<high; i++) { 1041d4002b98SHong Zhang if (*(cp+8*i) > col) break; 1042d4002b98SHong Zhang if (*(cp+8*i) == col) { 1043d4002b98SHong Zhang *v++ = *(vp+8*i); 1044d4002b98SHong Zhang goto finished; 1045d4002b98SHong Zhang } 1046d4002b98SHong Zhang } 1047d4002b98SHong Zhang *v++ = 0.0; 1048d4002b98SHong Zhang finished:; 1049d4002b98SHong Zhang } 1050d4002b98SHong Zhang } 1051d4002b98SHong Zhang PetscFunctionReturn(0); 1052d4002b98SHong Zhang } 1053d4002b98SHong Zhang 1054d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 1055d4002b98SHong Zhang { 1056d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1057d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1058d4002b98SHong Zhang const char *name; 1059d4002b98SHong Zhang PetscViewerFormat format; 1060d4002b98SHong Zhang PetscErrorCode ierr; 1061d4002b98SHong Zhang 1062d4002b98SHong Zhang PetscFunctionBegin; 1063d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1064d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1065d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1066d4002b98SHong Zhang /* 1067d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1068d4002b98SHong Zhang nofinalvalue = 1; 1069d4002b98SHong Zhang } 1070d4002b98SHong Zhang */ 1071d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1072c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n",m,A->cmap->n);CHKERRQ(ierr); 1073c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %" PetscInt_FMT " \n",a->nz);CHKERRQ(ierr); 1074d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1075c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",4);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1076d4002b98SHong Zhang #else 1077c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",3);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1078d4002b98SHong Zhang #endif 1079d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr); 1080d4002b98SHong Zhang 1081d4002b98SHong Zhang for (i=0; i<m; i++) { 1082d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1083d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1084d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1085c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1086d4002b98SHong Zhang #else 1087c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1088d4002b98SHong Zhang #endif 1089d4002b98SHong Zhang } 1090d4002b98SHong Zhang } 1091d4002b98SHong Zhang /* 1092d4002b98SHong Zhang if (nofinalvalue) { 1093d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1094c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr); 1095d4002b98SHong Zhang #else 1096c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr); 1097d4002b98SHong Zhang #endif 1098d4002b98SHong Zhang } 1099d4002b98SHong Zhang */ 1100d4002b98SHong Zhang ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 1101d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr); 1102d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1103d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1104d4002b98SHong Zhang PetscFunctionReturn(0); 1105d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1106d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1107d4002b98SHong Zhang for (i=0; i<m; i++) { 1108c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i);CHKERRQ(ierr); 1109d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1110d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1111d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1112d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1113c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1114d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1115c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1116d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1117c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1118d4002b98SHong Zhang } 1119d4002b98SHong Zhang #else 1120c0aa6a63SJacob Faibussowitsch if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);} 1121d4002b98SHong Zhang #endif 1122d4002b98SHong Zhang } 1123d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1124d4002b98SHong Zhang } 1125d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1126d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1127d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1128d4002b98SHong Zhang PetscScalar value; 1129d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1130d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1131d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1132d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1133d4002b98SHong Zhang realonly = PETSC_FALSE; 1134d4002b98SHong Zhang break; 1135d4002b98SHong Zhang } 1136d4002b98SHong Zhang } 1137d4002b98SHong Zhang #endif 1138d4002b98SHong Zhang 1139d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1140d4002b98SHong Zhang for (i=0; i<m; i++) { 1141d4002b98SHong Zhang jcnt = 0; 1142d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1143d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1144d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1145d4002b98SHong Zhang value = a->val[cnt++]; 1146d4002b98SHong Zhang jcnt++; 1147d4002b98SHong Zhang } else { 1148d4002b98SHong Zhang value = 0.0; 1149d4002b98SHong Zhang } 1150d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1151d4002b98SHong Zhang if (realonly) { 1152d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr); 1153d4002b98SHong Zhang } else { 1154d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr); 1155d4002b98SHong Zhang } 1156d4002b98SHong Zhang #else 1157d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr); 1158d4002b98SHong Zhang #endif 1159d4002b98SHong Zhang } 1160d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1161d4002b98SHong Zhang } 1162d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1163d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1164d4002b98SHong Zhang PetscInt fshift=1; 1165d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1166d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1167d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr); 1168d4002b98SHong Zhang #else 1169d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr); 1170d4002b98SHong Zhang #endif 1171c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz);CHKERRQ(ierr); 1172d4002b98SHong Zhang for (i=0; i<m; i++) { 1173d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1174d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1175d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1176c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1177d4002b98SHong Zhang #else 1178c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1179d4002b98SHong Zhang #endif 1180d4002b98SHong Zhang } 1181d4002b98SHong Zhang } 1182d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 118368aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 118468aafef3SStefano Zampini for (i=0; i<a->totalslices; i++) { /* loop over slices */ 118568aafef3SStefano Zampini PetscInt row; 1186c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr); 118768aafef3SStefano Zampini for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 118868aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 118968aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 1190c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 119168aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1192c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 119368aafef3SStefano Zampini } else { 1194c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 119568aafef3SStefano Zampini } 119668aafef3SStefano Zampini #else 1197c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 119868aafef3SStefano Zampini #endif 119968aafef3SStefano Zampini } 120068aafef3SStefano Zampini } 1201d4002b98SHong Zhang } else { 1202d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1203d4002b98SHong Zhang if (A->factortype) { 1204d4002b98SHong Zhang for (i=0; i<m; i++) { 1205d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1206c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i);CHKERRQ(ierr); 1207d4002b98SHong Zhang /* L part */ 1208d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1209d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1210d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1211c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1212d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1213c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1214d4002b98SHong Zhang } else { 1215c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1216d4002b98SHong Zhang } 1217d4002b98SHong Zhang #else 1218c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1219d4002b98SHong Zhang #endif 1220d4002b98SHong Zhang } 1221d4002b98SHong Zhang /* diagonal */ 1222d4002b98SHong Zhang j = a->diag[i]; 1223d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1224d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1225c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr); 1226d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1227c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr); 1228d4002b98SHong Zhang } else { 1229c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr); 1230d4002b98SHong Zhang } 1231d4002b98SHong Zhang #else 1232c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr); 1233d4002b98SHong Zhang #endif 1234d4002b98SHong Zhang 1235d4002b98SHong Zhang /* U part */ 1236d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1237d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1238d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1239c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1240d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1241c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1242d4002b98SHong Zhang } else { 1243c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1244d4002b98SHong Zhang } 1245d4002b98SHong Zhang #else 1246c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1247d4002b98SHong Zhang #endif 1248d4002b98SHong Zhang } 1249d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1250d4002b98SHong Zhang } 1251d4002b98SHong Zhang } else { 1252d4002b98SHong Zhang for (i=0; i<m; i++) { 1253d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1254c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i);CHKERRQ(ierr); 1255d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1256d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1257d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1258c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1259d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1260c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1261d4002b98SHong Zhang } else { 1262c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1263d4002b98SHong Zhang } 1264d4002b98SHong Zhang #else 1265c0aa6a63SJacob Faibussowitsch ierr = PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr); 1266d4002b98SHong Zhang #endif 1267d4002b98SHong Zhang } 1268d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1269d4002b98SHong Zhang } 1270d4002b98SHong Zhang } 1271d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1272d4002b98SHong Zhang } 1273d4002b98SHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1274d4002b98SHong Zhang PetscFunctionReturn(0); 1275d4002b98SHong Zhang } 1276d4002b98SHong Zhang 1277d4002b98SHong Zhang #include <petscdraw.h> 1278d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1279d4002b98SHong Zhang { 1280d4002b98SHong Zhang Mat A=(Mat)Aa; 1281d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1282d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1283d4002b98SHong Zhang int color; 1284d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1285d4002b98SHong Zhang PetscViewer viewer; 1286d4002b98SHong Zhang PetscViewerFormat format; 1287d4002b98SHong Zhang PetscErrorCode ierr; 1288d4002b98SHong Zhang 1289d4002b98SHong Zhang PetscFunctionBegin; 1290d4002b98SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1291d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1292d4002b98SHong Zhang ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1293d4002b98SHong Zhang 1294d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1295d4002b98SHong Zhang 1296d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1297d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1298d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1299d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1300d4002b98SHong Zhang for (i=0; i<m; i++) { 1301d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1302d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1303d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1304d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1305d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1306d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1307d4002b98SHong Zhang } 1308d4002b98SHong Zhang } 1309d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1310d4002b98SHong Zhang for (i=0; i<m; i++) { 1311d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1312d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1313d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1314d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1315d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1316d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1317d4002b98SHong Zhang } 1318d4002b98SHong Zhang } 1319d4002b98SHong Zhang color = PETSC_DRAW_RED; 1320d4002b98SHong Zhang for (i=0; i<m; i++) { 1321d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1322d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1323d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1324d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1325d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1326d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1327d4002b98SHong Zhang } 1328d4002b98SHong Zhang } 1329d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1330d4002b98SHong Zhang } else { 1331d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1332d4002b98SHong Zhang /* first determine max of all nonzero values */ 1333d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1334d4002b98SHong Zhang PetscInt count=0; 1335d4002b98SHong Zhang PetscDraw popup; 1336d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1337d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1338d4002b98SHong Zhang } 1339d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1340d4002b98SHong Zhang ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1341d4002b98SHong Zhang ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1342d4002b98SHong Zhang 1343d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1344d4002b98SHong Zhang for (i=0; i<m; i++) { 1345d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1346d4002b98SHong Zhang y_l = m - i - 1.0; 1347d4002b98SHong Zhang y_r = y_l + 1.0; 1348d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1349d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1350d4002b98SHong Zhang x_r = x_l + 1.0; 1351d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1352d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1353d4002b98SHong Zhang count++; 1354d4002b98SHong Zhang } 1355d4002b98SHong Zhang } 1356d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1357d4002b98SHong Zhang } 1358d4002b98SHong Zhang PetscFunctionReturn(0); 1359d4002b98SHong Zhang } 1360d4002b98SHong Zhang 1361d4002b98SHong Zhang #include <petscdraw.h> 1362d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1363d4002b98SHong Zhang { 1364d4002b98SHong Zhang PetscDraw draw; 1365d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1366d4002b98SHong Zhang PetscBool isnull; 1367d4002b98SHong Zhang PetscErrorCode ierr; 1368d4002b98SHong Zhang 1369d4002b98SHong Zhang PetscFunctionBegin; 1370d4002b98SHong Zhang ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1371d4002b98SHong Zhang ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1372d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1373d4002b98SHong Zhang 1374d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1375d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1376d4002b98SHong Zhang ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1377d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1378d4002b98SHong Zhang ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr); 1379d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1380d4002b98SHong Zhang ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1381d4002b98SHong Zhang PetscFunctionReturn(0); 1382d4002b98SHong Zhang } 1383d4002b98SHong Zhang 1384d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1385d4002b98SHong Zhang { 1386d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1387d4002b98SHong Zhang PetscErrorCode ierr; 1388d4002b98SHong Zhang 1389d4002b98SHong Zhang PetscFunctionBegin; 1390d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1391d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1392d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1393d4002b98SHong Zhang if (iascii) { 1394d4002b98SHong Zhang ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr); 1395d4002b98SHong Zhang } else if (isbinary) { 1396d4002b98SHong Zhang /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */ 1397d4002b98SHong Zhang } else if (isdraw) { 1398d4002b98SHong Zhang ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr); 1399d4002b98SHong Zhang } 1400d4002b98SHong Zhang PetscFunctionReturn(0); 1401d4002b98SHong Zhang } 1402d4002b98SHong Zhang 1403d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1404d4002b98SHong Zhang { 1405d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1406d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1407d4002b98SHong Zhang MatScalar *vp; 1408d4002b98SHong Zhang PetscErrorCode ierr; 1409d4002b98SHong Zhang 1410d4002b98SHong Zhang PetscFunctionBegin; 1411d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1412d4002b98SHong Zhang /* To do: compress out the unused elements */ 1413d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 14147d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr); 14157d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n",a->reallocs);CHKERRQ(ierr); 14167d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Maximum nonzeros in any row is %" PetscInt_FMT "\n",a->rlenmax);CHKERRQ(ierr); 1417d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1418d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1419d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1420d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1421d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1422d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1423d4002b98SHong Zhang row = 8*i + row_in_slice; 1424d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1425d4002b98SHong Zhang /* 1426d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1427d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1428d4002b98SHong Zhang */ 1429d4002b98SHong Zhang lastcol = 0; 1430d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1431d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1432d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1433d4002b98SHong Zhang for (j=1;j<8;j++) { 1434d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1435d4002b98SHong Zhang lastcol = cp[j]; 1436d4002b98SHong Zhang break; 1437d4002b98SHong Zhang } 1438d4002b98SHong Zhang } 1439d4002b98SHong Zhang } else { 1440d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1441d4002b98SHong Zhang } 1442d4002b98SHong Zhang 1443d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1444d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1445d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1446d4002b98SHong Zhang } 1447d4002b98SHong Zhang } 1448d4002b98SHong Zhang } 1449d4002b98SHong Zhang 1450d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1451d4002b98SHong Zhang a->reallocs = 0; 1452d4002b98SHong Zhang 1453d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1454d4002b98SHong Zhang PetscFunctionReturn(0); 1455d4002b98SHong Zhang } 1456d4002b98SHong Zhang 1457d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1458d4002b98SHong Zhang { 1459d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1460d4002b98SHong Zhang 1461d4002b98SHong Zhang PetscFunctionBegin; 1462d4002b98SHong Zhang info->block_size = 1.0; 14633966268fSBarry Smith info->nz_allocated = a->maxallocmat; 14643966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 14653966268fSBarry Smith info->nz_unneeded = (a->maxallocmat-a->sliidx[a->totalslices]); 14663966268fSBarry Smith info->assemblies = A->num_ass; 14673966268fSBarry Smith info->mallocs = A->info.mallocs; 1468d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1469d4002b98SHong Zhang if (A->factortype) { 1470d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1471d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1472d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1473d4002b98SHong Zhang } else { 1474d4002b98SHong Zhang info->fill_ratio_given = 0; 1475d4002b98SHong Zhang info->fill_ratio_needed = 0; 1476d4002b98SHong Zhang info->factor_mallocs = 0; 1477d4002b98SHong Zhang } 1478d4002b98SHong Zhang PetscFunctionReturn(0); 1479d4002b98SHong Zhang } 1480d4002b98SHong Zhang 1481d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1482d4002b98SHong Zhang { 1483d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1484d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1485d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1486d4002b98SHong Zhang MatScalar *vp,value; 1487d4002b98SHong Zhang PetscErrorCode ierr; 1488d4002b98SHong Zhang 1489d4002b98SHong Zhang PetscFunctionBegin; 1490d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1491d4002b98SHong Zhang row = im[k]; 1492d4002b98SHong Zhang if (row < 0) continue; 1493*2c71b3e2SJacob Faibussowitsch PetscAssertFalse(row >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1494d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1495d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1496d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1497d4002b98SHong Zhang nrow = a->rlen[row]; 1498d4002b98SHong Zhang low = 0; 1499d4002b98SHong Zhang high = nrow; 1500d4002b98SHong Zhang 1501d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1502d4002b98SHong Zhang col = in[l]; 1503d4002b98SHong Zhang if (col<0) continue; 1504*2c71b3e2SJacob Faibussowitsch PetscAssertFalse(col >= A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1505d4002b98SHong Zhang if (a->roworiented) { 1506d4002b98SHong Zhang value = v[l+k*n]; 1507d4002b98SHong Zhang } else { 1508d4002b98SHong Zhang value = v[k+l*m]; 1509d4002b98SHong Zhang } 1510d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1511d4002b98SHong Zhang 1512ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */ 1513d4002b98SHong Zhang if (col <= lastcol) low = 0; 1514d4002b98SHong Zhang else high = nrow; 1515d4002b98SHong Zhang lastcol = col; 1516d4002b98SHong Zhang while (high-low > 5) { 1517d4002b98SHong Zhang t = (low+high)/2; 1518d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1519d4002b98SHong Zhang else low = t; 1520d4002b98SHong Zhang } 1521d4002b98SHong Zhang for (i=low; i<high; i++) { 1522d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1523d4002b98SHong Zhang if (*(cp+i*8) == col) { 1524d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1525d4002b98SHong Zhang else *(vp+i*8) = value; 1526d4002b98SHong Zhang low = i + 1; 1527d4002b98SHong Zhang goto noinsert; 1528d4002b98SHong Zhang } 1529d4002b98SHong Zhang } 1530d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1531d4002b98SHong Zhang if (nonew == 1) goto noinsert; 1532*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1533d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1534d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1535d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1536d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1537d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1538d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1539d4002b98SHong Zhang } 1540d4002b98SHong Zhang a->rlen[row]++; 1541d4002b98SHong Zhang *(cp+i*8) = col; 1542d4002b98SHong Zhang *(vp+i*8) = value; 1543d4002b98SHong Zhang a->nz++; 1544d4002b98SHong Zhang A->nonzerostate++; 1545d4002b98SHong Zhang low = i+1; high++; nrow++; 1546d4002b98SHong Zhang noinsert:; 1547d4002b98SHong Zhang } 1548d4002b98SHong Zhang a->rlen[row] = nrow; 1549d4002b98SHong Zhang } 1550d4002b98SHong Zhang PetscFunctionReturn(0); 1551d4002b98SHong Zhang } 1552d4002b98SHong Zhang 1553d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1554d4002b98SHong Zhang { 1555d4002b98SHong Zhang PetscErrorCode ierr; 1556d4002b98SHong Zhang 1557d4002b98SHong Zhang PetscFunctionBegin; 1558d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1559d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1560d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1561d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1562d4002b98SHong Zhang 1563*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(a->sliidx[a->totalslices] != b->sliidx[b->totalslices],PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1564580bdb30SBarry Smith ierr = PetscArraycpy(b->val,a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr); 1565d4002b98SHong Zhang } else { 1566d4002b98SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1567d4002b98SHong Zhang } 1568d4002b98SHong Zhang PetscFunctionReturn(0); 1569d4002b98SHong Zhang } 1570d4002b98SHong Zhang 1571d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1572d4002b98SHong Zhang { 1573d4002b98SHong Zhang PetscErrorCode ierr; 1574d4002b98SHong Zhang 1575d4002b98SHong Zhang PetscFunctionBegin; 1576f4259b30SLisandro Dalcin ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,NULL);CHKERRQ(ierr); 1577d4002b98SHong Zhang PetscFunctionReturn(0); 1578d4002b98SHong Zhang } 1579d4002b98SHong Zhang 1580d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1581d4002b98SHong Zhang { 1582d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1583d4002b98SHong Zhang 1584d4002b98SHong Zhang PetscFunctionBegin; 1585d4002b98SHong Zhang *array = a->val; 1586d4002b98SHong Zhang PetscFunctionReturn(0); 1587d4002b98SHong Zhang } 1588d4002b98SHong Zhang 1589d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1590d4002b98SHong Zhang { 1591d4002b98SHong Zhang PetscFunctionBegin; 1592d4002b98SHong Zhang PetscFunctionReturn(0); 1593d4002b98SHong Zhang } 1594d4002b98SHong Zhang 1595d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1596d4002b98SHong Zhang { 1597d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1598d4002b98SHong Zhang PetscInt i; 1599d4002b98SHong Zhang MatScalar *aval=a->val; 1600d4002b98SHong Zhang 1601d4002b98SHong Zhang PetscFunctionBegin; 1602d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1603d4002b98SHong Zhang PetscFunctionReturn(0); 1604d4002b98SHong Zhang } 1605d4002b98SHong Zhang 1606d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1607d4002b98SHong Zhang { 1608d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1609d4002b98SHong Zhang PetscInt i; 1610d4002b98SHong Zhang MatScalar *aval=a->val; 1611d4002b98SHong Zhang PetscErrorCode ierr; 1612d4002b98SHong Zhang 1613d4002b98SHong Zhang PetscFunctionBegin; 1614d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1615d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1616d4002b98SHong Zhang PetscFunctionReturn(0); 1617d4002b98SHong Zhang } 1618d4002b98SHong Zhang 1619d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1620d4002b98SHong Zhang { 1621d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1622d4002b98SHong Zhang MatScalar *aval=a->val; 1623d4002b98SHong Zhang PetscScalar oalpha=alpha; 1624d4002b98SHong Zhang PetscBLASInt one=1,size; 1625d4002b98SHong Zhang PetscErrorCode ierr; 1626d4002b98SHong Zhang 1627d4002b98SHong Zhang PetscFunctionBegin; 1628d4002b98SHong Zhang ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr); 1629d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1630d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1631d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr); 1632d4002b98SHong Zhang PetscFunctionReturn(0); 1633d4002b98SHong Zhang } 1634d4002b98SHong Zhang 1635d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1636d4002b98SHong Zhang { 1637d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1638d4002b98SHong Zhang PetscErrorCode ierr; 1639d4002b98SHong Zhang 1640d4002b98SHong Zhang PetscFunctionBegin; 1641d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1642d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr); 1643d4002b98SHong Zhang } 1644d4002b98SHong Zhang ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1645d4002b98SHong Zhang PetscFunctionReturn(0); 1646d4002b98SHong Zhang } 1647d4002b98SHong Zhang 1648d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1649d4002b98SHong Zhang { 1650d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1651d4002b98SHong Zhang PetscScalar *x,sum,*t; 1652f4259b30SLisandro Dalcin const MatScalar *idiag=NULL,*mdiag; 1653d4002b98SHong Zhang const PetscScalar *b,*xb; 1654d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1655d4002b98SHong Zhang const PetscInt *diag; 1656d4002b98SHong Zhang PetscErrorCode ierr; 1657d4002b98SHong Zhang 1658d4002b98SHong Zhang PetscFunctionBegin; 1659d4002b98SHong Zhang its = its*lits; 1660d4002b98SHong Zhang 1661d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1662d4002b98SHong Zhang if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);} 1663d4002b98SHong Zhang a->fshift = fshift; 1664d4002b98SHong Zhang a->omega = omega; 1665d4002b98SHong Zhang 1666d4002b98SHong Zhang diag = a->diag; 1667d4002b98SHong Zhang t = a->ssor_work; 1668d4002b98SHong Zhang idiag = a->idiag; 1669d4002b98SHong Zhang mdiag = a->mdiag; 1670d4002b98SHong Zhang 1671d4002b98SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1672d4002b98SHong Zhang ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1673d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 1674*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(flag == SOR_APPLY_UPPER,PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 1675*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(flag == SOR_APPLY_LOWER,PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1676*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(flag & SOR_EISENSTAT,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1677d4002b98SHong Zhang 1678d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1679d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1680d4002b98SHong Zhang for (i=0; i<m; i++) { 1681d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1682d4002b98SHong Zhang sum = b[i]; 1683d4002b98SHong Zhang n = (diag[i]-shift)/8; 1684d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1685d4002b98SHong Zhang t[i] = sum; 1686d4002b98SHong Zhang x[i] = sum*idiag[i]; 1687d4002b98SHong Zhang } 1688d4002b98SHong Zhang xb = t; 1689d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1690d4002b98SHong Zhang } else xb = b; 1691d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1692d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1693d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1694d4002b98SHong Zhang sum = xb[i]; 1695d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1696d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1697d4002b98SHong Zhang if (xb == b) { 1698d4002b98SHong Zhang x[i] = sum*idiag[i]; 1699d4002b98SHong Zhang } else { 1700d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1701d4002b98SHong Zhang } 1702d4002b98SHong Zhang } 1703d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1704d4002b98SHong Zhang } 1705d4002b98SHong Zhang its--; 1706d4002b98SHong Zhang } 1707d4002b98SHong Zhang while (its--) { 1708d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1709d4002b98SHong Zhang for (i=0; i<m; i++) { 1710d4002b98SHong Zhang /* lower */ 1711d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1712d4002b98SHong Zhang sum = b[i]; 1713d4002b98SHong Zhang n = (diag[i]-shift)/8; 1714d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1715d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1716d4002b98SHong Zhang /* upper */ 1717d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1718d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1719d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1720d4002b98SHong Zhang } 1721d4002b98SHong Zhang xb = t; 1722d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1723d4002b98SHong Zhang } else xb = b; 1724d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1725d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1726d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1727d4002b98SHong Zhang sum = xb[i]; 1728d4002b98SHong Zhang if (xb == b) { 1729d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1730d4002b98SHong Zhang n = a->rlen[i]; 1731d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1732d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1733d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1734d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1735d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1736d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1737d4002b98SHong Zhang } 1738d4002b98SHong Zhang } 1739d4002b98SHong Zhang if (xb == b) { 1740d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1741d4002b98SHong Zhang } else { 1742d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1743d4002b98SHong Zhang } 1744d4002b98SHong Zhang } 1745d4002b98SHong Zhang } 1746d4002b98SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1747d4002b98SHong Zhang ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 1748d4002b98SHong Zhang PetscFunctionReturn(0); 1749d4002b98SHong Zhang } 1750d4002b98SHong Zhang 1751d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1752d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17536108893eSStefano Zampini MatGetRow_SeqSELL, 17546108893eSStefano Zampini MatRestoreRow_SeqSELL, 1755d4002b98SHong Zhang MatMult_SeqSELL, 1756d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1757d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1758d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1759f4259b30SLisandro Dalcin NULL, 1760f4259b30SLisandro Dalcin NULL, 1761f4259b30SLisandro Dalcin NULL, 1762f4259b30SLisandro Dalcin /* 10*/ NULL, 1763f4259b30SLisandro Dalcin NULL, 1764f4259b30SLisandro Dalcin NULL, 1765d4002b98SHong Zhang MatSOR_SeqSELL, 1766f4259b30SLisandro Dalcin NULL, 1767d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1768d4002b98SHong Zhang MatEqual_SeqSELL, 1769d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1770d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1771f4259b30SLisandro Dalcin NULL, 1772f4259b30SLisandro Dalcin /* 20*/ NULL, 1773d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1774d4002b98SHong Zhang MatSetOption_SeqSELL, 1775d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1776f4259b30SLisandro Dalcin /* 24*/ NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779f4259b30SLisandro Dalcin NULL, 1780f4259b30SLisandro Dalcin NULL, 1781d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin NULL, 1784f4259b30SLisandro Dalcin NULL, 1785f4259b30SLisandro Dalcin NULL, 1786d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1787f4259b30SLisandro Dalcin NULL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin /* 39*/ NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794d4002b98SHong Zhang MatGetValues_SeqSELL, 1795d4002b98SHong Zhang MatCopy_SeqSELL, 1796f4259b30SLisandro Dalcin /* 44*/ NULL, 1797d4002b98SHong Zhang MatScale_SeqSELL, 1798d4002b98SHong Zhang MatShift_SeqSELL, 1799f4259b30SLisandro Dalcin NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin /* 49*/ NULL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin NULL, 1805f4259b30SLisandro Dalcin NULL, 1806d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin /* 59*/ NULL, 1812d4002b98SHong Zhang MatDestroy_SeqSELL, 1813d4002b98SHong Zhang MatView_SeqSELL, 1814f4259b30SLisandro Dalcin NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin /* 64*/ NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin /* 69*/ NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin /* 74*/ NULL, 1827d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin /* 79*/ NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin /* 84*/ NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin /* 89*/ NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin /* 94*/ NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin /* 99*/ NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854d4002b98SHong Zhang MatConjugate_SeqSELL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin /*104*/ NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin /*109*/ NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin NULL, 1865d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1866f4259b30SLisandro Dalcin /*114*/ NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin NULL, 1870f4259b30SLisandro Dalcin NULL, 1871f4259b30SLisandro Dalcin /*119*/ NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin /*124*/ NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin /*129*/ NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin /*134*/ NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin /*139*/ NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin /*144*/ NULL 1897d4002b98SHong Zhang }; 1898d4002b98SHong Zhang 1899d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1900d4002b98SHong Zhang { 1901d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1902d4002b98SHong Zhang PetscErrorCode ierr; 1903d4002b98SHong Zhang 1904d4002b98SHong Zhang PetscFunctionBegin; 1905*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(!a->nonew,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1906d4002b98SHong Zhang 1907d4002b98SHong Zhang /* allocate space for values if not already there */ 1908d4002b98SHong Zhang if (!a->saved_values) { 1909d4002b98SHong Zhang ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr); 1910d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr); 1911d4002b98SHong Zhang } 1912d4002b98SHong Zhang 1913d4002b98SHong Zhang /* copy values over */ 1914580bdb30SBarry Smith ierr = PetscArraycpy(a->saved_values,a->val,a->sliidx[a->totalslices]);CHKERRQ(ierr); 1915d4002b98SHong Zhang PetscFunctionReturn(0); 1916d4002b98SHong Zhang } 1917d4002b98SHong Zhang 1918d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1919d4002b98SHong Zhang { 1920d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1921d4002b98SHong Zhang PetscErrorCode ierr; 1922d4002b98SHong Zhang 1923d4002b98SHong Zhang PetscFunctionBegin; 1924*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(!a->nonew,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1925*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(!a->saved_values,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1926580bdb30SBarry Smith ierr = PetscArraycpy(a->val,a->saved_values,a->sliidx[a->totalslices]);CHKERRQ(ierr); 1927d4002b98SHong Zhang PetscFunctionReturn(0); 1928d4002b98SHong Zhang } 1929d4002b98SHong Zhang 1930d4002b98SHong Zhang /*@C 1931d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1932d4002b98SHong Zhang 1933d4002b98SHong Zhang Not Collective 1934d4002b98SHong Zhang 1935d4002b98SHong Zhang Input Parameters: 1936d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1937d4002b98SHong Zhang . array - pointer to the data 1938d4002b98SHong Zhang 1939d4002b98SHong Zhang Level: intermediate 1940d4002b98SHong Zhang 1941d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1942d4002b98SHong Zhang @*/ 1943d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1944d4002b98SHong Zhang { 1945d4002b98SHong Zhang PetscErrorCode ierr; 1946d4002b98SHong Zhang 1947d4002b98SHong Zhang PetscFunctionBegin; 1948d4002b98SHong Zhang ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 1949d4002b98SHong Zhang PetscFunctionReturn(0); 1950d4002b98SHong Zhang } 1951d4002b98SHong Zhang 1952d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1953d4002b98SHong Zhang { 1954d4002b98SHong Zhang Mat_SeqSELL *b; 1955d4002b98SHong Zhang PetscMPIInt size; 1956d4002b98SHong Zhang PetscErrorCode ierr; 1957d4002b98SHong Zhang 1958d4002b98SHong Zhang PetscFunctionBegin; 1959ed73aabaSBarry Smith ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr); 1960ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRMPI(ierr); 1961*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(size > 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1962d4002b98SHong Zhang 1963d4002b98SHong Zhang ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1964d4002b98SHong Zhang 1965d4002b98SHong Zhang B->data = (void*)b; 1966d4002b98SHong Zhang 1967d4002b98SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1968d4002b98SHong Zhang 1969f4259b30SLisandro Dalcin b->row = NULL; 1970f4259b30SLisandro Dalcin b->col = NULL; 1971f4259b30SLisandro Dalcin b->icol = NULL; 1972d4002b98SHong Zhang b->reallocs = 0; 1973d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1974d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1975d4002b98SHong Zhang b->nonew = 0; 1976f4259b30SLisandro Dalcin b->diag = NULL; 1977f4259b30SLisandro Dalcin b->solve_work = NULL; 1978f4259b30SLisandro Dalcin B->spptr = NULL; 1979f4259b30SLisandro Dalcin b->saved_values = NULL; 1980f4259b30SLisandro Dalcin b->idiag = NULL; 1981f4259b30SLisandro Dalcin b->mdiag = NULL; 1982f4259b30SLisandro Dalcin b->ssor_work = NULL; 1983d4002b98SHong Zhang b->omega = 1.0; 1984d4002b98SHong Zhang b->fshift = 0.0; 1985d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1986d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1987d4002b98SHong Zhang 1988d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr); 1989d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr); 1990d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr); 1991d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr); 1992d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr); 1993d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr); 1994d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr); 1995d4002b98SHong Zhang PetscFunctionReturn(0); 1996d4002b98SHong Zhang } 1997d4002b98SHong Zhang 1998d4002b98SHong Zhang /* 1999d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 2000d4002b98SHong Zhang */ 2001d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 2002d4002b98SHong Zhang { 2003ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL*)C->data,*a = (Mat_SeqSELL*)A->data; 2004d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 2005d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2006d4002b98SHong Zhang PetscErrorCode ierr; 2007d4002b98SHong Zhang 2008d4002b98SHong Zhang PetscFunctionBegin; 2009d4002b98SHong Zhang C->factortype = A->factortype; 2010f4259b30SLisandro Dalcin c->row = NULL; 2011f4259b30SLisandro Dalcin c->col = NULL; 2012f4259b30SLisandro Dalcin c->icol = NULL; 2013d4002b98SHong Zhang c->reallocs = 0; 2014d4002b98SHong Zhang C->assembled = PETSC_TRUE; 2015d4002b98SHong Zhang 2016d4002b98SHong Zhang ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 2017d4002b98SHong Zhang ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 2018d4002b98SHong Zhang 2019d4002b98SHong Zhang ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr); 2020d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2021d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr); 2022d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 2023d4002b98SHong Zhang 2024d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 2025d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 2026d4002b98SHong Zhang 2027d4002b98SHong Zhang /* allocate the matrix space */ 2028d4002b98SHong Zhang if (mallocmatspace) { 2029d4002b98SHong Zhang ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr); 2030d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2031d4002b98SHong Zhang 2032d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2033d4002b98SHong Zhang 2034d4002b98SHong Zhang if (m > 0) { 2035580bdb30SBarry Smith ierr = PetscArraycpy(c->colidx,a->colidx,a->maxallocmat);CHKERRQ(ierr); 2036d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 2037580bdb30SBarry Smith ierr = PetscArraycpy(c->val,a->val,a->maxallocmat);CHKERRQ(ierr); 2038d4002b98SHong Zhang } else { 2039580bdb30SBarry Smith ierr = PetscArrayzero(c->val,a->maxallocmat);CHKERRQ(ierr); 2040d4002b98SHong Zhang } 2041d4002b98SHong Zhang } 2042d4002b98SHong Zhang } 2043d4002b98SHong Zhang 2044d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2045d4002b98SHong Zhang c->roworiented = a->roworiented; 2046d4002b98SHong Zhang c->nonew = a->nonew; 2047d4002b98SHong Zhang if (a->diag) { 2048d4002b98SHong Zhang ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr); 2049d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2050d4002b98SHong Zhang for (i=0; i<m; i++) { 2051d4002b98SHong Zhang c->diag[i] = a->diag[i]; 2052d4002b98SHong Zhang } 2053f4259b30SLisandro Dalcin } else c->diag = NULL; 2054d4002b98SHong Zhang 2055f4259b30SLisandro Dalcin c->solve_work = NULL; 2056f4259b30SLisandro Dalcin c->saved_values = NULL; 2057f4259b30SLisandro Dalcin c->idiag = NULL; 2058f4259b30SLisandro Dalcin c->ssor_work = NULL; 2059d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2060d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2061d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2062d4002b98SHong Zhang 2063d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2064d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2065d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2066d4002b98SHong Zhang c->nz = a->nz; 2067d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2068d4002b98SHong Zhang 2069d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2070d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2071d4002b98SHong Zhang 2072d4002b98SHong Zhang ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 2073d4002b98SHong Zhang PetscFunctionReturn(0); 2074d4002b98SHong Zhang } 2075d4002b98SHong Zhang 2076d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 2077d4002b98SHong Zhang { 2078d4002b98SHong Zhang PetscErrorCode ierr; 2079d4002b98SHong Zhang 2080d4002b98SHong Zhang PetscFunctionBegin; 2081d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 2082d4002b98SHong Zhang ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 2083d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 2084d4002b98SHong Zhang ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr); 2085d4002b98SHong Zhang } 2086d4002b98SHong Zhang ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr); 2087d4002b98SHong Zhang ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 2088d4002b98SHong Zhang PetscFunctionReturn(0); 2089d4002b98SHong Zhang } 2090d4002b98SHong Zhang 2091ed73aabaSBarry Smith /*MC 2092ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices, 2093ed73aabaSBarry Smith based on the sliced Ellpack format 2094ed73aabaSBarry Smith 2095ed73aabaSBarry Smith Options Database Keys: 2096ed73aabaSBarry Smith . -mat_type seqsell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 2097ed73aabaSBarry Smith 2098ed73aabaSBarry Smith Level: beginner 2099ed73aabaSBarry Smith 2100ed73aabaSBarry Smith .seealso: MatCreateSeqSell(), MATSELL, MATMPISELL, MATSEQAIJ, MATAIJ, MATMPIAIJ 2101ed73aabaSBarry Smith M*/ 2102ed73aabaSBarry Smith 2103ed73aabaSBarry Smith /*MC 2104ed73aabaSBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 2105ed73aabaSBarry Smith 2106ed73aabaSBarry Smith This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 2107ed73aabaSBarry Smith and MATMPISELL otherwise. As a result, for single process communicators, 2108ed73aabaSBarry Smith MatSeqSELLSetPreallocation() is supported, and similarly MatMPISELLSetPreallocation() is supported 2109ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 2110ed73aabaSBarry Smith the above preallocation routines for simplicity. 2111ed73aabaSBarry Smith 2112ed73aabaSBarry Smith Options Database Keys: 2113ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 2114ed73aabaSBarry Smith 2115ed73aabaSBarry Smith Level: beginner 2116ed73aabaSBarry Smith 2117ed73aabaSBarry Smith Notes: 2118ed73aabaSBarry Smith This format is only supported for real scalars, double precision, and 32 bit indices (the defaults). 2119ed73aabaSBarry Smith 2120ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of 2121ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement. 2122ed73aabaSBarry Smith 2123ed73aabaSBarry Smith Developer Notes: 2124ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance. 2125ed73aabaSBarry Smith 2126ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8 2127ed73aabaSBarry Smith .vb 2128ed73aabaSBarry Smith (2 0 3 4) 2129ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0) 2130ed73aabaSBarry Smith (0 0 7 8) 2131ed73aabaSBarry Smith (0 0 9 9) 2132ed73aabaSBarry Smith 2133ed73aabaSBarry Smith symbolically the Ellpack format can be written as 2134ed73aabaSBarry Smith 2135ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |) 2136ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |) 2137ed73aabaSBarry Smith -------- --------- 2138ed73aabaSBarry Smith (7 8 |) (2 3 |) 2139ed73aabaSBarry Smith (9 9 |) (2 3 |) 2140ed73aabaSBarry Smith 2141ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case). 2142ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and 2143ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice. 2144ed73aabaSBarry Smith 2145ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3) 2146ed73aabaSBarry Smith 2147ed73aabaSBarry Smith .ve 2148ed73aabaSBarry Smith 2149ed73aabaSBarry Smith See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance. 2150ed73aabaSBarry Smith 2151ed73aabaSBarry Smith References: 2152ed73aabaSBarry Smith Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}, 2153ed73aabaSBarry Smith Proceedings of the 47th International Conference on Parallel Processing, 2018. 2154ed73aabaSBarry Smith 2155ed73aabaSBarry Smith .seealso: MatCreateSeqSELL(), MatCreateSeqAIJ(), MatCreateSell(), MATSEQSELL, MATMPISELL, MATSEQAIJ, MATMPIAIJ, MATAIJ 2156ed73aabaSBarry Smith M*/ 2157ed73aabaSBarry Smith 2158d4002b98SHong Zhang /*@C 2159d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 2160d4002b98SHong Zhang 2161ed73aabaSBarry Smith Collective on comm 2162d4002b98SHong Zhang 2163d4002b98SHong Zhang Input Parameters: 2164d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2165d4002b98SHong Zhang . m - number of rows 2166d4002b98SHong Zhang . n - number of columns 2167d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2168d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2169d4002b98SHong Zhang (possibly different for each row) or NULL 2170d4002b98SHong Zhang 2171d4002b98SHong Zhang Output Parameter: 2172d4002b98SHong Zhang . A - the matrix 2173d4002b98SHong Zhang 2174d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2175f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2176d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 2177d4002b98SHong Zhang 2178d4002b98SHong Zhang Notes: 2179d4002b98SHong Zhang If nnz is given then nz is ignored 2180d4002b98SHong Zhang 2181d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2182d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2183d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2184d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2185d4002b98SHong Zhang 2186d4002b98SHong Zhang Level: intermediate 2187d4002b98SHong Zhang 2188ed73aabaSBarry Smith .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatSeqSELLSetPreallocation(), MATSELL, MATSEQSELL, MATMPISELL 2189d4002b98SHong Zhang 2190d4002b98SHong Zhang @*/ 2191d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2192d4002b98SHong Zhang { 2193d4002b98SHong Zhang PetscErrorCode ierr; 2194d4002b98SHong Zhang 2195d4002b98SHong Zhang PetscFunctionBegin; 2196d4002b98SHong Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 2197d4002b98SHong Zhang ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2198d4002b98SHong Zhang ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr); 2199d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr); 2200d4002b98SHong Zhang PetscFunctionReturn(0); 2201d4002b98SHong Zhang } 2202d4002b98SHong Zhang 2203d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2204d4002b98SHong Zhang { 2205d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2206d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2207d4002b98SHong Zhang PetscErrorCode ierr; 2208d4002b98SHong Zhang 2209d4002b98SHong Zhang PetscFunctionBegin; 2210d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2211d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2212d4002b98SHong Zhang *flg = PETSC_FALSE; 2213d4002b98SHong Zhang PetscFunctionReturn(0); 2214d4002b98SHong Zhang } 2215d4002b98SHong Zhang /* if the a->colidx are the same */ 2216580bdb30SBarry Smith ierr = PetscArraycmp(a->colidx,b->colidx,a->sliidx[totalslices],flg);CHKERRQ(ierr); 2217d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2218d4002b98SHong Zhang /* if a->val are the same */ 2219580bdb30SBarry Smith ierr = PetscArraycmp(a->val,b->val,a->sliidx[totalslices],flg);CHKERRQ(ierr); 2220d4002b98SHong Zhang PetscFunctionReturn(0); 2221d4002b98SHong Zhang } 2222d4002b98SHong Zhang 2223d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2224d4002b98SHong Zhang { 2225d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2226d4002b98SHong Zhang 2227d4002b98SHong Zhang PetscFunctionBegin; 2228d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2229d4002b98SHong Zhang PetscFunctionReturn(0); 2230d4002b98SHong Zhang } 2231d4002b98SHong Zhang 2232d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2233d4002b98SHong Zhang { 2234d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2235d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2236d4002b98SHong Zhang PetscInt i; 2237d4002b98SHong Zhang PetscScalar *val = a->val; 2238d4002b98SHong Zhang 2239d4002b98SHong Zhang PetscFunctionBegin; 2240d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2241d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2242d4002b98SHong Zhang } 2243d4002b98SHong Zhang #else 2244d4002b98SHong Zhang PetscFunctionBegin; 2245d4002b98SHong Zhang #endif 2246d4002b98SHong Zhang PetscFunctionReturn(0); 2247d4002b98SHong Zhang } 2248