1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8ed73aabaSBarry Smith 9ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE; 10ed73aabaSBarry Smith static const char citation[] = 11ed73aabaSBarry Smith "@inproceedings{ZhangELLPACK2018,\n" 12ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n" 13ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n" 14ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n" 15ed73aabaSBarry Smith " year = 2018\n" 16ed73aabaSBarry Smith "}\n"; 17ed73aabaSBarry Smith 185f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 194243e2ceSHong Zhang 20d4002b98SHong Zhang #include <immintrin.h> 21d4002b98SHong Zhang 22d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 23d4002b98SHong Zhang #define _MM_SCALE_8 8 24d4002b98SHong Zhang #endif 25d4002b98SHong Zhang 26d4002b98SHong Zhang #if defined(__AVX512F__) 27d4002b98SHong Zhang /* these do not work 28d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 29d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 30d4002b98SHong Zhang */ 31d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 32d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 33ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const*)acolidx); \ 34ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 35d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 36a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y) 375f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 38a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 39ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 40ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const*)acolidx); /* SSE2 */ \ 41a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \ 42a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x,vec_vals,vec_y) 43d4002b98SHong Zhang #endif 44d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 45d4002b98SHong Zhang 46d4002b98SHong Zhang /*@C 47d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 48d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 49d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 50d4002b98SHong Zhang during matrix assembly can be increased significantly. 51d4002b98SHong Zhang 52d083f849SBarry Smith Collective 53d4002b98SHong Zhang 54d4002b98SHong Zhang Input Parameters: 55d4002b98SHong Zhang + B - The matrix 56d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 57d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 58d4002b98SHong Zhang (possibly different for each row) or NULL 59d4002b98SHong Zhang 60d4002b98SHong Zhang Notes: 61d4002b98SHong Zhang If nnz is given then nz is ignored. 62d4002b98SHong Zhang 63d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 64d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 65d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 66d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 67d4002b98SHong Zhang 68d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 69d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 70d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 71d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 72d4002b98SHong Zhang 73d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 74d4002b98SHong Zhang entries or columns indices. 75d4002b98SHong Zhang 76c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 77c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 78d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 79d4002b98SHong Zhang 80d4002b98SHong Zhang Level: intermediate 81d4002b98SHong Zhang 82db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()` 83d4002b98SHong Zhang 84d4002b98SHong Zhang @*/ 85d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 86d4002b98SHong Zhang { 87d4002b98SHong Zhang PetscFunctionBegin; 88d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 89d4002b98SHong Zhang PetscValidType(B,1); 90cac4c232SBarry Smith PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen)); 91d4002b98SHong Zhang PetscFunctionReturn(0); 92d4002b98SHong Zhang } 93d4002b98SHong Zhang 94d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 95d4002b98SHong Zhang { 96d4002b98SHong Zhang Mat_SeqSELL *b; 97d4002b98SHong Zhang PetscInt i,j,totalslices; 98d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 99d4002b98SHong Zhang 100d4002b98SHong Zhang PetscFunctionBegin; 101d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 102d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 103d4002b98SHong Zhang skipallocation = PETSC_TRUE; 104d4002b98SHong Zhang maxallocrow = 0; 105d4002b98SHong Zhang } 106d4002b98SHong Zhang 1079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 109d4002b98SHong Zhang 110d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 111d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 11208401ef6SPierre Jolivet PetscCheck(maxallocrow >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %" PetscInt_FMT,maxallocrow); 113d4002b98SHong Zhang if (rlen) { 114d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 11508401ef6SPierre Jolivet PetscCheck(rlen[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,rlen[i]); 11608401ef6SPierre Jolivet PetscCheck(rlen[i] <= B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT,i,rlen[i],B->cmap->n); 117d4002b98SHong Zhang } 118d4002b98SHong Zhang } 119d4002b98SHong Zhang 120d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 121d4002b98SHong Zhang 122d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 123d4002b98SHong Zhang 124faa75363SBarry Smith totalslices = PetscCeilInt(B->rmap->n,8); 125d4002b98SHong Zhang b->totalslices = totalslices; 126d4002b98SHong Zhang if (!skipallocation) { 1279566063dSJacob Faibussowitsch if (B->rmap->n & 0x07) PetscCall(PetscInfo(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %" PetscInt_FMT ")\n",B->rmap->n)); 128d4002b98SHong Zhang 129d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 1309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices+1,&b->sliidx)); 1319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt))); 132d4002b98SHong Zhang } 133d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 134d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 135d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 136d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 137d4002b98SHong Zhang } else { 138d4002b98SHong Zhang maxallocrow = 0; 139d4002b98SHong Zhang b->sliidx[0] = 0; 140d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 141d4002b98SHong Zhang b->sliidx[i] = 0; 142d4002b98SHong Zhang for (j=0;j<8;j++) { 143d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 144d4002b98SHong Zhang } 145d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 1469566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(b->sliidx[i-1],8*b->sliidx[i],&b->sliidx[i])); 147d4002b98SHong Zhang } 148d4002b98SHong Zhang /* last slice */ 149d4002b98SHong Zhang b->sliidx[totalslices] = 0; 150d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 151d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 152d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 153d4002b98SHong Zhang } 154d4002b98SHong Zhang 155d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 156d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 1579566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(B,&b->val,&b->colidx)); 158d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 1599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx)); 1609566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)))); 161d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 1629566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(8*totalslices,&b->rlen)); 1639566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt))); 164d4002b98SHong Zhang 165d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 166d4002b98SHong Zhang b->free_val = PETSC_TRUE; 167d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 168d4002b98SHong Zhang } else { 169d4002b98SHong Zhang b->free_val = PETSC_FALSE; 170d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 171d4002b98SHong Zhang } 172d4002b98SHong Zhang 173d4002b98SHong Zhang b->nz = 0; 174d4002b98SHong Zhang b->maxallocrow = maxallocrow; 175d4002b98SHong Zhang b->rlenmax = maxallocrow; 176d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 177d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 178d4002b98SHong Zhang if (realalloc) { 1799566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE)); 180d4002b98SHong Zhang } 181d4002b98SHong Zhang PetscFunctionReturn(0); 182d4002b98SHong Zhang } 183d4002b98SHong Zhang 1846108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1856108893eSStefano Zampini { 1866108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL*)A->data; 1876108893eSStefano Zampini PetscInt shift; 1886108893eSStefano Zampini 1896108893eSStefano Zampini PetscFunctionBegin; 190aed4548fSBarry Smith PetscCheck(row >= 0 && row < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range",row); 1916108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1926108893eSStefano Zampini shift = a->sliidx[row>>3]+(row&0x07); 1936108893eSStefano Zampini if (!a->getrowcols) { 1946108893eSStefano Zampini 1959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals)); 1966108893eSStefano Zampini } 1976108893eSStefano Zampini if (idx) { 1986108893eSStefano Zampini PetscInt j; 1996108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j]; 2006108893eSStefano Zampini *idx = a->getrowcols; 2016108893eSStefano Zampini } 2026108893eSStefano Zampini if (v) { 2036108893eSStefano Zampini PetscInt j; 2046108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j]; 2056108893eSStefano Zampini *v = a->getrowvals; 2066108893eSStefano Zampini } 2076108893eSStefano Zampini PetscFunctionReturn(0); 2086108893eSStefano Zampini } 2096108893eSStefano Zampini 2106108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 2116108893eSStefano Zampini { 2126108893eSStefano Zampini PetscFunctionBegin; 2136108893eSStefano Zampini PetscFunctionReturn(0); 2146108893eSStefano Zampini } 2156108893eSStefano Zampini 216d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 217d4002b98SHong Zhang { 218d4002b98SHong Zhang Mat B; 219d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 220e3f1f374SStefano Zampini PetscInt i; 221d4002b98SHong Zhang 222d4002b98SHong Zhang PetscFunctionBegin; 223ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 224ad013a7bSRichard Tran Mills B = *newmat; 2259566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 226ad013a7bSRichard Tran Mills } else { 2279566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 2289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 2299566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQAIJ)); 2309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,a->rlen)); 231ad013a7bSRichard Tran Mills } 232d4002b98SHong Zhang 233e3f1f374SStefano Zampini for (i=0; i<A->rmap->n; i++) { 234e108cb99SStefano Zampini PetscInt nz = 0,*cols = NULL; 235e108cb99SStefano Zampini PetscScalar *vals = NULL; 236e3f1f374SStefano Zampini 2379566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSELL(A,i,&nz,&cols,&vals)); 2389566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES)); 2399566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals)); 240d4002b98SHong Zhang } 241e3f1f374SStefano Zampini 2429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 2439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 244d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 245d4002b98SHong Zhang 246d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2479566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 248d4002b98SHong Zhang } else { 249d4002b98SHong Zhang *newmat = B; 250d4002b98SHong Zhang } 251d4002b98SHong Zhang PetscFunctionReturn(0); 252d4002b98SHong Zhang } 253d4002b98SHong Zhang 254d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 255d4002b98SHong Zhang 256d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 257d4002b98SHong Zhang { 258d4002b98SHong Zhang Mat B; 259d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 260d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 261d4002b98SHong Zhang const PetscInt *cols; 262d4002b98SHong Zhang const PetscScalar *vals; 263d4002b98SHong Zhang 264d4002b98SHong Zhang PetscFunctionBegin; 265ad013a7bSRichard Tran Mills 266ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 267ad013a7bSRichard Tran Mills B = *newmat; 268ad013a7bSRichard Tran Mills } else { 269d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 2709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rowlengths)); 271d4002b98SHong Zhang for (i=0; i<m; i++) { 272d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 273d4002b98SHong Zhang } 274d5e5b2e5SBarry Smith } 275d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 276d5e5b2e5SBarry Smith PetscBool eq; 2779566063dSJacob Faibussowitsch PetscCall(PetscMemcmp(rowlengths,a->ilen,m*sizeof(PetscInt),&eq)); 27828b400f6SJacob Faibussowitsch PetscCheck(eq,PETSC_COMM_SELF,PETSC_ERR_PLIB,"SeqAIJ ilen array incorrect"); 2799566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlengths)); 280d5e5b2e5SBarry Smith rowlengths = a->ilen; 281d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 2829566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 2839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,n,m,n)); 2849566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQSELL)); 2859566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(B,0,rowlengths)); 2869566063dSJacob Faibussowitsch if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths)); 287ad013a7bSRichard Tran Mills } 288d4002b98SHong Zhang 289d4002b98SHong Zhang for (row=0; row<m; row++) { 2909566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals)); 2919566063dSJacob Faibussowitsch PetscCall(MatSetValues_SeqSELL(B,1,&row,ncols,cols,vals,INSERT_VALUES)); 2929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals)); 293d4002b98SHong Zhang } 2949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 2959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 296d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 297d4002b98SHong Zhang 298d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2999566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 300d4002b98SHong Zhang } else { 301d4002b98SHong Zhang *newmat = B; 302d4002b98SHong Zhang } 303d4002b98SHong Zhang PetscFunctionReturn(0); 304d4002b98SHong Zhang } 305d4002b98SHong Zhang 306d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 307d4002b98SHong Zhang { 308d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 309d4002b98SHong Zhang PetscScalar *y; 310d4002b98SHong Zhang const PetscScalar *x; 311d4002b98SHong Zhang const MatScalar *aval=a->val; 312d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 313d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 3147285fed1SHong Zhang PetscInt i,j; 315d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 316d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 317d4002b98SHong Zhang __m256i vec_idx; 318d4002b98SHong Zhang __mmask8 mask; 319d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 320d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 3215f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 322a48a6482SHong Zhang __m128i vec_idx; 323a48a6482SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 324a48a6482SHong Zhang MatScalar yval; 325a48a6482SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 32621cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 327d4002b98SHong Zhang __m128d vec_x_tmp; 328d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 329d4002b98SHong Zhang MatScalar yval; 330d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 331d4002b98SHong Zhang #else 332d4002b98SHong Zhang PetscScalar sum[8]; 333d4002b98SHong Zhang #endif 334d4002b98SHong Zhang 335d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 336d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 337d4002b98SHong Zhang #endif 338d4002b98SHong Zhang 339d4002b98SHong Zhang PetscFunctionBegin; 3409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 3419566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy,&y)); 342d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 343d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 344d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 345d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 346d4002b98SHong Zhang 347d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 348d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 349d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 350d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 351d4002b98SHong Zhang 35238efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 353d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 354d4002b98SHong Zhang case 3: 355d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 356d4002b98SHong Zhang acolidx += 8; aval += 8; 357d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 358d4002b98SHong Zhang acolidx += 8; aval += 8; 359d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 360d4002b98SHong Zhang acolidx += 8; aval += 8; 361d4002b98SHong Zhang j += 3; 362d4002b98SHong Zhang break; 363d4002b98SHong Zhang case 2: 364d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 365d4002b98SHong Zhang acolidx += 8; aval += 8; 366d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 367d4002b98SHong Zhang acolidx += 8; aval += 8; 368d4002b98SHong Zhang j += 2; 369d4002b98SHong Zhang break; 370d4002b98SHong Zhang case 1: 371d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 372d4002b98SHong Zhang acolidx += 8; aval += 8; 373d4002b98SHong Zhang j += 1; 374d4002b98SHong Zhang break; 375d4002b98SHong Zhang } 376d4002b98SHong Zhang #pragma novector 377d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 378d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 379d4002b98SHong Zhang acolidx += 8; aval += 8; 380d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 381d4002b98SHong Zhang acolidx += 8; aval += 8; 382d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 383d4002b98SHong Zhang acolidx += 8; aval += 8; 384d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 385d4002b98SHong Zhang acolidx += 8; aval += 8; 386d4002b98SHong Zhang } 387d4002b98SHong Zhang 388d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 389d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 390d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 391d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 392d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 393ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8*i],mask,vec_y); 394d4002b98SHong Zhang } else { 395ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8*i],vec_y); 396d4002b98SHong Zhang } 397d4002b98SHong Zhang } 3985f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 399a48a6482SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 400a48a6482SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 401a48a6482SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 402a48a6482SHong Zhang 403a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 404a48a6482SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 405a48a6482SHong Zhang rows_left = A->rmap->n - 8*i; 406a48a6482SHong Zhang for (r=0; r<rows_left; ++r) { 407a48a6482SHong Zhang yval = (MatScalar)0; 408a48a6482SHong Zhang row = 8*i + r; 409a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 410a48a6482SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 411a48a6482SHong Zhang y[row] = yval; 412a48a6482SHong Zhang } 413a48a6482SHong Zhang break; 414a48a6482SHong Zhang } 415a48a6482SHong Zhang 416a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 417a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 418a48a6482SHong Zhang 419a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 420a48a6482SHong Zhang #pragma novector 421a48a6482SHong Zhang #pragma unroll(2) 422a48a6482SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 423a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 424a48a6482SHong Zhang aval += 4; acolidx += 4; 425a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2); 426a48a6482SHong Zhang aval += 4; acolidx += 4; 427a48a6482SHong Zhang } 428a48a6482SHong Zhang 429ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8,vec_y); 430ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8+4,vec_y2); 431a48a6482SHong Zhang } 43221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 433d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 434d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 435d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 436d4002b98SHong Zhang 437d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 438d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 439d4002b98SHong Zhang 440d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 441d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 442d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 443d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 444d4002b98SHong Zhang yval = (MatScalar)0; 445d4002b98SHong Zhang row = 8*i + r; 446d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 447d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 448d4002b98SHong Zhang y[row] = yval; 449d4002b98SHong Zhang } 450d4002b98SHong Zhang break; 451d4002b98SHong Zhang } 452d4002b98SHong Zhang 453d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 454a48a6482SHong Zhang #pragma novector 455a48a6482SHong Zhang #pragma unroll(2) 4567285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 457d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 458165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 459d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 460d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 461d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 462d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 463d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 464d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 465d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 466d4002b98SHong Zhang aval += 4; 467d4002b98SHong Zhang 468d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 469d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 470d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 471d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 472d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 473d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 474d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 475d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 476d4002b98SHong Zhang aval += 4; 477d4002b98SHong Zhang } 478d4002b98SHong Zhang 479d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 480d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 481d4002b98SHong Zhang } 482d4002b98SHong Zhang #else 483d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 484d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 485d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 486d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 487d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 488d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 489d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 490d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 491d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 492d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 493d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 494d4002b98SHong Zhang } 495d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 496d4002b98SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 497d4002b98SHong Zhang } else { 4987285fed1SHong Zhang for (j=0; j<8; j++) y[8*i+j] = sum[j]; 499d4002b98SHong Zhang } 500d4002b98SHong Zhang } 501d4002b98SHong Zhang #endif 502d4002b98SHong Zhang 5039566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*a->nz-a->nonzerorowcnt)); /* theoretical minimal FLOPs */ 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy,&y)); 506d4002b98SHong Zhang PetscFunctionReturn(0); 507d4002b98SHong Zhang } 508d4002b98SHong Zhang 509d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 510d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 511d4002b98SHong Zhang { 512d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 513d4002b98SHong Zhang PetscScalar *y,*z; 514d4002b98SHong Zhang const PetscScalar *x; 515d4002b98SHong Zhang const MatScalar *aval=a->val; 516d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 517d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 518d4002b98SHong Zhang PetscInt i,j; 519d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5207285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 521d4002b98SHong Zhang __m256i vec_idx; 522d4002b98SHong Zhang __mmask8 mask; 5237285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 5247285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 52521cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5267285fed1SHong Zhang __m128d vec_x_tmp; 5277285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 5287285fed1SHong Zhang MatScalar yval; 5297285fed1SHong Zhang PetscInt r,row,nnz_in_row; 530d4002b98SHong Zhang #else 531d4002b98SHong Zhang PetscScalar sum[8]; 532d4002b98SHong Zhang #endif 533d4002b98SHong Zhang 534d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 535d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 536d4002b98SHong Zhang #endif 537d4002b98SHong Zhang 538d4002b98SHong Zhang PetscFunctionBegin; 5399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 5409566063dSJacob Faibussowitsch PetscCall(VecGetArrayPair(yy,zz,&y,&z)); 541d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5427285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5437285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5447285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5457285fed1SHong Zhang 546d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 547d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 548ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y,mask,&y[8*i]); 5497285fed1SHong Zhang } else { 550ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8*i]); 5517285fed1SHong Zhang } 5527285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5537285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5547285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5557285fed1SHong Zhang 5567285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5577285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 5587285fed1SHong Zhang case 3: 5597285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5607285fed1SHong Zhang acolidx += 8; aval += 8; 5617285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5627285fed1SHong Zhang acolidx += 8; aval += 8; 5637285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5647285fed1SHong Zhang acolidx += 8; aval += 8; 5657285fed1SHong Zhang j += 3; 5667285fed1SHong Zhang break; 5677285fed1SHong Zhang case 2: 5687285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5697285fed1SHong Zhang acolidx += 8; aval += 8; 5707285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5717285fed1SHong Zhang acolidx += 8; aval += 8; 5727285fed1SHong Zhang j += 2; 5737285fed1SHong Zhang break; 5747285fed1SHong Zhang case 1: 5757285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5767285fed1SHong Zhang acolidx += 8; aval += 8; 5777285fed1SHong Zhang j += 1; 5787285fed1SHong Zhang break; 5797285fed1SHong Zhang } 5807285fed1SHong Zhang #pragma novector 5817285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 5827285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5837285fed1SHong Zhang acolidx += 8; aval += 8; 5847285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5857285fed1SHong Zhang acolidx += 8; aval += 8; 5867285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5877285fed1SHong Zhang acolidx += 8; aval += 8; 5887285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5897285fed1SHong Zhang acolidx += 8; aval += 8; 5907285fed1SHong Zhang } 5917285fed1SHong Zhang 5927285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 5937285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 5947285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 5957285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 596ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8*i],mask,vec_y); 597d4002b98SHong Zhang } else { 598ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8*i],vec_y); 599d4002b98SHong Zhang } 6007285fed1SHong Zhang } 60121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 6027285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 6037285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6047285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6057285fed1SHong Zhang 6067285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6077285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6087285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6097285fed1SHong Zhang row = 8*i + r; 6107285fed1SHong Zhang yval = (MatScalar)0.0; 6117285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6127285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 6137285fed1SHong Zhang z[row] = y[row] + yval; 6147285fed1SHong Zhang } 6157285fed1SHong Zhang break; 6167285fed1SHong Zhang } 6177285fed1SHong Zhang 6187285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 6197285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 6207285fed1SHong Zhang 6217285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6227285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6237285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 624165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 6257285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6267285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 627165f9cc3SJed Brown vec_x = _mm256_setzero_pd(); 6287285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6297285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6307285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6317285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6327285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 6337285fed1SHong Zhang aval += 4; 6347285fed1SHong Zhang 6357285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6367285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6377285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6387285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6397285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6407285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6417285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6427285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 6437285fed1SHong Zhang aval += 4; 6447285fed1SHong Zhang } 6457285fed1SHong Zhang 6467285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 6477285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 6487285fed1SHong Zhang } 649d4002b98SHong Zhang #else 6507285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 6517285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 652d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 653d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 654d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 655d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 656d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 657d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 658d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 659d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 660d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 661d4002b98SHong Zhang } 6627285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6637285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 664d4002b98SHong Zhang } else { 6657285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 6667285fed1SHong Zhang } 667d4002b98SHong Zhang } 668d4002b98SHong Zhang #endif 669d4002b98SHong Zhang 6709566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*a->nz)); 6719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 6729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayPair(yy,zz,&y,&z)); 673d4002b98SHong Zhang PetscFunctionReturn(0); 674d4002b98SHong Zhang } 675d4002b98SHong Zhang 676d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 677d4002b98SHong Zhang { 678d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 679d4002b98SHong Zhang PetscScalar *y; 680d4002b98SHong Zhang const PetscScalar *x; 681d4002b98SHong Zhang const MatScalar *aval=a->val; 682d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 6837285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 684d4002b98SHong Zhang 685d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 686d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 687d4002b98SHong Zhang #endif 688d4002b98SHong Zhang 689d4002b98SHong Zhang PetscFunctionBegin; 6909fc32365SStefano Zampini if (A->symmetric) { 6919566063dSJacob Faibussowitsch PetscCall(MatMultAdd_SeqSELL(A,xx,zz,yy)); 6929fc32365SStefano Zampini PetscFunctionReturn(0); 6939fc32365SStefano Zampini } 6949566063dSJacob Faibussowitsch if (zz != yy) PetscCall(VecCopy(zz,yy)); 6959566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx,&x)); 6969566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy,&y)); 697d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 6987285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6997285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 7007285fed1SHong Zhang row = 8*i + r; 7017285fed1SHong Zhang nnz_in_row = a->rlen[row]; 7027285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 7037285fed1SHong Zhang } 7047285fed1SHong Zhang break; 7057285fed1SHong Zhang } 7067285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 7077285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 7087285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 7097285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 7107285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 7117285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 7127285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 7137285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 7147285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 715d4002b98SHong Zhang } 716d4002b98SHong Zhang } 7179566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*a->sliidx[a->totalslices])); 7189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx,&x)); 7199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy,&y)); 720d4002b98SHong Zhang PetscFunctionReturn(0); 721d4002b98SHong Zhang } 722d4002b98SHong Zhang 723d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 724d4002b98SHong Zhang { 725d4002b98SHong Zhang PetscFunctionBegin; 7269fc32365SStefano Zampini if (A->symmetric) { 7279566063dSJacob Faibussowitsch PetscCall(MatMult_SeqSELL(A,xx,yy)); 7289fc32365SStefano Zampini } else { 7299566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 7309566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd_SeqSELL(A,xx,yy,yy)); 7319fc32365SStefano Zampini } 732d4002b98SHong Zhang PetscFunctionReturn(0); 733d4002b98SHong Zhang } 734d4002b98SHong Zhang 735d4002b98SHong Zhang /* 736d4002b98SHong Zhang Checks for missing diagonals 737d4002b98SHong Zhang */ 738d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 739d4002b98SHong Zhang { 740d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 741d4002b98SHong Zhang PetscInt *diag,i; 742d4002b98SHong Zhang 743d4002b98SHong Zhang PetscFunctionBegin; 744d4002b98SHong Zhang *missing = PETSC_FALSE; 745d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 746d4002b98SHong Zhang *missing = PETSC_TRUE; 747d4002b98SHong Zhang if (d) *d = 0; 7489566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n")); 749d4002b98SHong Zhang } else { 750d4002b98SHong Zhang diag = a->diag; 751d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 752d4002b98SHong Zhang if (diag[i] == -1) { 753d4002b98SHong Zhang *missing = PETSC_TRUE; 754d4002b98SHong Zhang if (d) *d = i; 7559566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix is missing diagonal number %" PetscInt_FMT "\n",i)); 756d4002b98SHong Zhang break; 757d4002b98SHong Zhang } 758d4002b98SHong Zhang } 759d4002b98SHong Zhang } 760d4002b98SHong Zhang PetscFunctionReturn(0); 761d4002b98SHong Zhang } 762d4002b98SHong Zhang 763d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 764d4002b98SHong Zhang { 765d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 766d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 767d4002b98SHong Zhang 768d4002b98SHong Zhang PetscFunctionBegin; 769d4002b98SHong Zhang if (!a->diag) { 7709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&a->diag)); 7719566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt))); 772d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 773d4002b98SHong Zhang } 774d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 775d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 776d4002b98SHong Zhang a->diag[i] = -1; 777d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 778d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 779d4002b98SHong Zhang a->diag[i] = shift+j*8; 780d4002b98SHong Zhang break; 781d4002b98SHong Zhang } 782d4002b98SHong Zhang } 783d4002b98SHong Zhang } 784d4002b98SHong Zhang PetscFunctionReturn(0); 785d4002b98SHong Zhang } 786d4002b98SHong Zhang 787d4002b98SHong Zhang /* 788d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 789d4002b98SHong Zhang */ 790d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 791d4002b98SHong Zhang { 792d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 793d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 794d4002b98SHong Zhang MatScalar *val = a->val; 795d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 796d4002b98SHong Zhang 797d4002b98SHong Zhang PetscFunctionBegin; 798d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 7999566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 800d4002b98SHong Zhang diag = a->diag; 801d4002b98SHong Zhang if (!a->idiag) { 8029566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work)); 8039566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar))); 804d4002b98SHong Zhang val = a->val; 805d4002b98SHong Zhang } 806d4002b98SHong Zhang mdiag = a->mdiag; 807d4002b98SHong Zhang idiag = a->idiag; 808d4002b98SHong Zhang 809d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 810d4002b98SHong Zhang for (i=0; i<m; i++) { 811d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 812d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 813d4002b98SHong Zhang if (PetscRealPart(fshift)) { 8149566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Zero diagonal on row %" PetscInt_FMT "\n",i)); 815d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 816d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 817d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 81898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %" PetscInt_FMT,i); 819d4002b98SHong Zhang } 820d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 821d4002b98SHong Zhang } 8229566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(m)); 823d4002b98SHong Zhang } else { 824d4002b98SHong Zhang for (i=0; i<m; i++) { 825d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 826d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 827d4002b98SHong Zhang } 8289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*m)); 829d4002b98SHong Zhang } 830d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 831d4002b98SHong Zhang PetscFunctionReturn(0); 832d4002b98SHong Zhang } 833d4002b98SHong Zhang 834d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 835d4002b98SHong Zhang { 836d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 837d4002b98SHong Zhang 838d4002b98SHong Zhang PetscFunctionBegin; 8399566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(a->val,a->sliidx[a->totalslices])); 8409566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 841d4002b98SHong Zhang PetscFunctionReturn(0); 842d4002b98SHong Zhang } 843d4002b98SHong Zhang 844d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 845d4002b98SHong Zhang { 846d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 847d4002b98SHong Zhang 848d4002b98SHong Zhang PetscFunctionBegin; 849d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 850c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->n,A->cmap->n,a->nz); 851d4002b98SHong Zhang #endif 8529566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(A,&a->val,&a->colidx)); 8539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 8549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 8559566063dSJacob Faibussowitsch PetscCall(PetscFree(a->diag)); 8569566063dSJacob Faibussowitsch PetscCall(PetscFree(a->rlen)); 8579566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sliidx)); 8589566063dSJacob Faibussowitsch PetscCall(PetscFree3(a->idiag,a->mdiag,a->ssor_work)); 8599566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 8609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 8619566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 8629566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->getrowcols,a->getrowvals)); 863d4002b98SHong Zhang 8649566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 865d4002b98SHong Zhang 8669566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A,NULL)); 8679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL)); 8689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL)); 8699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL)); 870*2e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLGetArray_C",NULL)); 871*2e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLRestoreArray_C",NULL)); 872*2e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqsell_seqaij_C",NULL)); 873d4002b98SHong Zhang PetscFunctionReturn(0); 874d4002b98SHong Zhang } 875d4002b98SHong Zhang 876d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 877d4002b98SHong Zhang { 878d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 879d4002b98SHong Zhang 880d4002b98SHong Zhang PetscFunctionBegin; 881d4002b98SHong Zhang switch (op) { 882d4002b98SHong Zhang case MAT_ROW_ORIENTED: 883d4002b98SHong Zhang a->roworiented = flg; 884d4002b98SHong Zhang break; 885d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 886d4002b98SHong Zhang a->keepnonzeropattern = flg; 887d4002b98SHong Zhang break; 888d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 889d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 890d4002b98SHong Zhang break; 891d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 892d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 893d4002b98SHong Zhang break; 894d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 895d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 896d4002b98SHong Zhang break; 897d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 898d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 899d4002b98SHong Zhang break; 9008c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 901d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 902d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 903071fcb05SBarry Smith case MAT_SORTED_FULL: 9049566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 905d4002b98SHong Zhang break; 906d4002b98SHong Zhang case MAT_SPD: 907d4002b98SHong Zhang case MAT_SYMMETRIC: 908d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 909d4002b98SHong Zhang case MAT_HERMITIAN: 910d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 911d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 912d4002b98SHong Zhang break; 913d4002b98SHong Zhang default: 91498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 915d4002b98SHong Zhang } 916d4002b98SHong Zhang PetscFunctionReturn(0); 917d4002b98SHong Zhang } 918d4002b98SHong Zhang 919d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 920d4002b98SHong Zhang { 921d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 922d4002b98SHong Zhang PetscInt i,j,n,shift; 923d4002b98SHong Zhang PetscScalar *x,zero=0.0; 924d4002b98SHong Zhang 925d4002b98SHong Zhang PetscFunctionBegin; 9269566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v,&n)); 92708401ef6SPierre Jolivet PetscCheck(n == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 928d4002b98SHong Zhang 929d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 930d4002b98SHong Zhang PetscInt *diag=a->diag; 9319566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 932d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 9339566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 934d4002b98SHong Zhang PetscFunctionReturn(0); 935d4002b98SHong Zhang } 936d4002b98SHong Zhang 9379566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 9389566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 939d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 940d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 941d4002b98SHong Zhang x[i] = 0; 942d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 943d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 944d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 945d4002b98SHong Zhang break; 946d4002b98SHong Zhang } 947d4002b98SHong Zhang } 948d4002b98SHong Zhang } 9499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 950d4002b98SHong Zhang PetscFunctionReturn(0); 951d4002b98SHong Zhang } 952d4002b98SHong Zhang 953d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 954d4002b98SHong Zhang { 955d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 956d4002b98SHong Zhang const PetscScalar *l,*r; 957d4002b98SHong Zhang PetscInt i,j,m,n,row; 958d4002b98SHong Zhang 959d4002b98SHong Zhang PetscFunctionBegin; 960d4002b98SHong Zhang if (ll) { 961d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 962d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 9639566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&m)); 96408401ef6SPierre Jolivet PetscCheck(m == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 9659566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 966d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 967dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 968dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 969dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= l[8*i+row]; 970dab86139SHong Zhang } 971dab86139SHong Zhang } else { 972d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 973d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 974d4002b98SHong Zhang } 975d4002b98SHong Zhang } 976dab86139SHong Zhang } 9779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 9789566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 979d4002b98SHong Zhang } 980d4002b98SHong Zhang if (rr) { 9819566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&n)); 98208401ef6SPierre Jolivet PetscCheck(n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 9839566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&r)); 984d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 985dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 986dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 987dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= r[a->colidx[j]]; 988dab86139SHong Zhang } 989dab86139SHong Zhang } else { 990d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 991d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 992d4002b98SHong Zhang } 993d4002b98SHong Zhang } 994dab86139SHong Zhang } 9959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&r)); 9969566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 997d4002b98SHong Zhang } 9989566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 999d4002b98SHong Zhang PetscFunctionReturn(0); 1000d4002b98SHong Zhang } 1001d4002b98SHong Zhang 1002d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1003d4002b98SHong Zhang { 1004d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1005d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 1006d4002b98SHong Zhang PetscInt shift; 1007d4002b98SHong Zhang MatScalar *vp; 1008d4002b98SHong Zhang 1009d4002b98SHong Zhang PetscFunctionBegin; 101068aafef3SStefano Zampini for (k=0; k<m; k++) { /* loop over requested rows */ 1011d4002b98SHong Zhang row = im[k]; 1012d4002b98SHong Zhang if (row<0) continue; 10136bdcaf15SBarry Smith PetscCheck(row < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1014d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1015d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1016d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 101768aafef3SStefano Zampini for (l=0; l<n; l++) { /* loop over requested columns */ 1018d4002b98SHong Zhang col = in[l]; 1019d4002b98SHong Zhang if (col<0) continue; 10206bdcaf15SBarry Smith PetscCheck(col < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1021d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 1022d4002b98SHong Zhang while (high-low > 5) { 1023d4002b98SHong Zhang t = (low+high)/2; 1024d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1025d4002b98SHong Zhang else low = t; 1026d4002b98SHong Zhang } 1027d4002b98SHong Zhang for (i=low; i<high; i++) { 1028d4002b98SHong Zhang if (*(cp+8*i) > col) break; 1029d4002b98SHong Zhang if (*(cp+8*i) == col) { 1030d4002b98SHong Zhang *v++ = *(vp+8*i); 1031d4002b98SHong Zhang goto finished; 1032d4002b98SHong Zhang } 1033d4002b98SHong Zhang } 1034d4002b98SHong Zhang *v++ = 0.0; 1035d4002b98SHong Zhang finished:; 1036d4002b98SHong Zhang } 1037d4002b98SHong Zhang } 1038d4002b98SHong Zhang PetscFunctionReturn(0); 1039d4002b98SHong Zhang } 1040d4002b98SHong Zhang 1041d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 1042d4002b98SHong Zhang { 1043d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1044d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1045d4002b98SHong Zhang const char *name; 1046d4002b98SHong Zhang PetscViewerFormat format; 1047d4002b98SHong Zhang 1048d4002b98SHong Zhang PetscFunctionBegin; 10499566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 1050d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1051d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1052d4002b98SHong Zhang /* 1053d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1054d4002b98SHong Zhang nofinalvalue = 1; 1055d4002b98SHong Zhang } 1056d4002b98SHong Zhang */ 10579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 10589566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n",m,A->cmap->n)); 10599566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %" PetscInt_FMT " \n",a->nz)); 1060d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10619566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",4);\n",a->nz+nofinalvalue)); 1062d4002b98SHong Zhang #else 10639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",3);\n",a->nz+nofinalvalue)); 1064d4002b98SHong Zhang #endif 10659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"zzz = [\n")); 1066d4002b98SHong Zhang 1067d4002b98SHong Zhang for (i=0; i<m; i++) { 1068d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1069d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1070d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1072d4002b98SHong Zhang #else 10739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j])); 1074d4002b98SHong Zhang #endif 1075d4002b98SHong Zhang } 1076d4002b98SHong Zhang } 1077d4002b98SHong Zhang /* 1078d4002b98SHong Zhang if (nofinalvalue) { 1079d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 10809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.)); 1081d4002b98SHong Zhang #else 10829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0)); 1083d4002b98SHong Zhang #endif 1084d4002b98SHong Zhang } 1085d4002b98SHong Zhang */ 10869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A,&name)); 10879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name)); 10889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1089d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1090d4002b98SHong Zhang PetscFunctionReturn(0); 1091d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 10929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1093d4002b98SHong Zhang for (i=0; i<m; i++) { 10949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1095d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1096d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1097d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1098d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1100d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 11019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]))); 1102d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 11039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]))); 1104d4002b98SHong Zhang } 1105d4002b98SHong Zhang #else 11069566063dSJacob Faibussowitsch if (a->val[shift+8*j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j])); 1107d4002b98SHong Zhang #endif 1108d4002b98SHong Zhang } 11099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 1110d4002b98SHong Zhang } 11119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1112d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1113d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1114d4002b98SHong Zhang PetscScalar value; 1115d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1116d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1117d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1118d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1119d4002b98SHong Zhang realonly = PETSC_FALSE; 1120d4002b98SHong Zhang break; 1121d4002b98SHong Zhang } 1122d4002b98SHong Zhang } 1123d4002b98SHong Zhang #endif 1124d4002b98SHong Zhang 11259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1126d4002b98SHong Zhang for (i=0; i<m; i++) { 1127d4002b98SHong Zhang jcnt = 0; 1128d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1129d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1130d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1131d4002b98SHong Zhang value = a->val[cnt++]; 1132d4002b98SHong Zhang jcnt++; 1133d4002b98SHong Zhang } else { 1134d4002b98SHong Zhang value = 0.0; 1135d4002b98SHong Zhang } 1136d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1137d4002b98SHong Zhang if (realonly) { 11389566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value))); 1139d4002b98SHong Zhang } else { 11409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value))); 1141d4002b98SHong Zhang } 1142d4002b98SHong Zhang #else 11439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value)); 1144d4002b98SHong Zhang #endif 1145d4002b98SHong Zhang } 11469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 1147d4002b98SHong Zhang } 11489566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1149d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1150d4002b98SHong Zhang PetscInt fshift=1; 11519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1152d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n")); 1154d4002b98SHong Zhang #else 11559566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n")); 1156d4002b98SHong Zhang #endif 11579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz)); 1158d4002b98SHong Zhang for (i=0; i<m; i++) { 1159d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1160d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1161d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1163d4002b98SHong Zhang #else 11649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j])); 1165d4002b98SHong Zhang #endif 1166d4002b98SHong Zhang } 1167d4002b98SHong Zhang } 11689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 116968aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 117068aafef3SStefano Zampini for (i=0; i<a->totalslices; i++) { /* loop over slices */ 117168aafef3SStefano Zampini PetscInt row; 11729566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n",i,a->sliidx[i],a->sliidx[i+1])); 117368aafef3SStefano Zampini for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 117468aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 117568aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 11769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]))); 117768aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 11789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]))); 117968aafef3SStefano Zampini } else { 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]))); 118168aafef3SStefano Zampini } 118268aafef3SStefano Zampini #else 11839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)a->val[j])); 118468aafef3SStefano Zampini #endif 118568aafef3SStefano Zampini } 118668aafef3SStefano Zampini } 1187d4002b98SHong Zhang } else { 11889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1189d4002b98SHong Zhang if (A->factortype) { 1190d4002b98SHong Zhang for (i=0; i<m; i++) { 1191d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 11929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1193d4002b98SHong Zhang /* L part */ 1194d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1195d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1196d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]))); 1198d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])))); 1200d4002b98SHong Zhang } else { 12019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]))); 1202d4002b98SHong Zhang } 1203d4002b98SHong Zhang #else 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j])); 1205d4002b98SHong Zhang #endif 1206d4002b98SHong Zhang } 1207d4002b98SHong Zhang /* diagonal */ 1208d4002b98SHong Zhang j = a->diag[i]; 1209d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1210d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]))); 1212d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])))); 1214d4002b98SHong Zhang } else { 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]))); 1216d4002b98SHong Zhang } 1217d4002b98SHong Zhang #else 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)(1.0/a->val[j]))); 1219d4002b98SHong Zhang #endif 1220d4002b98SHong Zhang 1221d4002b98SHong Zhang /* U part */ 1222d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1223d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1224d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]))); 1226d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])))); 1228d4002b98SHong Zhang } else { 12299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]))); 1230d4002b98SHong Zhang } 1231d4002b98SHong Zhang #else 12329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j])); 1233d4002b98SHong Zhang #endif 1234d4002b98SHong Zhang } 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 1236d4002b98SHong Zhang } 1237d4002b98SHong Zhang } else { 1238d4002b98SHong Zhang for (i=0; i<m; i++) { 1239d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 12409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1241d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1242d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1243d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1245d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]))); 1247d4002b98SHong Zhang } else { 12489566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]))); 1249d4002b98SHong Zhang } 1250d4002b98SHong Zhang #else 12519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j])); 1252d4002b98SHong Zhang #endif 1253d4002b98SHong Zhang } 12549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 1255d4002b98SHong Zhang } 1256d4002b98SHong Zhang } 12579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1258d4002b98SHong Zhang } 12599566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1260d4002b98SHong Zhang PetscFunctionReturn(0); 1261d4002b98SHong Zhang } 1262d4002b98SHong Zhang 1263d4002b98SHong Zhang #include <petscdraw.h> 1264d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1265d4002b98SHong Zhang { 1266d4002b98SHong Zhang Mat A=(Mat)Aa; 1267d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1268d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1269d4002b98SHong Zhang int color; 1270d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1271d4002b98SHong Zhang PetscViewer viewer; 1272d4002b98SHong Zhang PetscViewerFormat format; 1273d4002b98SHong Zhang 1274d4002b98SHong Zhang PetscFunctionBegin; 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer)); 12769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 12779566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr)); 1278d4002b98SHong Zhang 1279d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1280d4002b98SHong Zhang 1281d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1282d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1283d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1284d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1285d4002b98SHong Zhang for (i=0; i<m; i++) { 1286d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1287d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1288d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1289d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1290d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 12919566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1292d4002b98SHong Zhang } 1293d4002b98SHong Zhang } 1294d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1295d4002b98SHong Zhang for (i=0; i<m; i++) { 1296d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1297d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1298d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1299d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1300d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 13019566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1302d4002b98SHong Zhang } 1303d4002b98SHong Zhang } 1304d4002b98SHong Zhang color = PETSC_DRAW_RED; 1305d4002b98SHong Zhang for (i=0; i<m; i++) { 1306d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1307d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1308d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1309d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1310d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 13119566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1312d4002b98SHong Zhang } 1313d4002b98SHong Zhang } 1314d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1315d4002b98SHong Zhang } else { 1316d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1317d4002b98SHong Zhang /* first determine max of all nonzero values */ 1318d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1319d4002b98SHong Zhang PetscInt count=0; 1320d4002b98SHong Zhang PetscDraw popup; 1321d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1322d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1323d4002b98SHong Zhang } 1324d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 13259566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw,&popup)); 13269566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup,minv,maxv)); 1327d4002b98SHong Zhang 1328d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1329d4002b98SHong Zhang for (i=0; i<m; i++) { 1330d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1331d4002b98SHong Zhang y_l = m - i - 1.0; 1332d4002b98SHong Zhang y_r = y_l + 1.0; 1333d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1334d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1335d4002b98SHong Zhang x_r = x_l + 1.0; 1336d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 13379566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1338d4002b98SHong Zhang count++; 1339d4002b98SHong Zhang } 1340d4002b98SHong Zhang } 1341d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1342d4002b98SHong Zhang } 1343d4002b98SHong Zhang PetscFunctionReturn(0); 1344d4002b98SHong Zhang } 1345d4002b98SHong Zhang 1346d4002b98SHong Zhang #include <petscdraw.h> 1347d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1348d4002b98SHong Zhang { 1349d4002b98SHong Zhang PetscDraw draw; 1350d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1351d4002b98SHong Zhang PetscBool isnull; 1352d4002b98SHong Zhang 1353d4002b98SHong Zhang PetscFunctionBegin; 13549566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 13559566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 1356d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1357d4002b98SHong Zhang 1358d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1359d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 13609566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw,xl,yl,xr,yr)); 13619566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer)); 13629566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A)); 13639566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL)); 13649566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 1365d4002b98SHong Zhang PetscFunctionReturn(0); 1366d4002b98SHong Zhang } 1367d4002b98SHong Zhang 1368d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1369d4002b98SHong Zhang { 1370d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1371d4002b98SHong Zhang 1372d4002b98SHong Zhang PetscFunctionBegin; 13739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 13749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 1376d4002b98SHong Zhang if (iascii) { 13779566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL_ASCII(A,viewer)); 1378d4002b98SHong Zhang } else if (isbinary) { 13799566063dSJacob Faibussowitsch /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */ 1380d4002b98SHong Zhang } else if (isdraw) { 13819566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL_Draw(A,viewer)); 1382d4002b98SHong Zhang } 1383d4002b98SHong Zhang PetscFunctionReturn(0); 1384d4002b98SHong Zhang } 1385d4002b98SHong Zhang 1386d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1387d4002b98SHong Zhang { 1388d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1389d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1390d4002b98SHong Zhang MatScalar *vp; 1391d4002b98SHong Zhang 1392d4002b98SHong Zhang PetscFunctionBegin; 1393d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1394d4002b98SHong Zhang /* To do: compress out the unused elements */ 13959566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 13969566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz)); 13979566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n",a->reallocs)); 13989566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Maximum nonzeros in any row is %" PetscInt_FMT "\n",a->rlenmax)); 1399d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1400d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1401d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1402d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1403d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1404d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1405d4002b98SHong Zhang row = 8*i + row_in_slice; 1406d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1407d4002b98SHong Zhang /* 1408d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1409d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1410d4002b98SHong Zhang */ 1411d4002b98SHong Zhang lastcol = 0; 1412d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1413d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1414d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1415d4002b98SHong Zhang for (j=1;j<8;j++) { 1416d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1417d4002b98SHong Zhang lastcol = cp[j]; 1418d4002b98SHong Zhang break; 1419d4002b98SHong Zhang } 1420d4002b98SHong Zhang } 1421d4002b98SHong Zhang } else { 1422d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1423d4002b98SHong Zhang } 1424d4002b98SHong Zhang 1425d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1426d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1427d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1428d4002b98SHong Zhang } 1429d4002b98SHong Zhang } 1430d4002b98SHong Zhang } 1431d4002b98SHong Zhang 1432d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1433d4002b98SHong Zhang a->reallocs = 0; 1434d4002b98SHong Zhang 14359566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1436d4002b98SHong Zhang PetscFunctionReturn(0); 1437d4002b98SHong Zhang } 1438d4002b98SHong Zhang 1439d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1440d4002b98SHong Zhang { 1441d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1442d4002b98SHong Zhang 1443d4002b98SHong Zhang PetscFunctionBegin; 1444d4002b98SHong Zhang info->block_size = 1.0; 14453966268fSBarry Smith info->nz_allocated = a->maxallocmat; 14463966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 14473966268fSBarry Smith info->nz_unneeded = (a->maxallocmat-a->sliidx[a->totalslices]); 14483966268fSBarry Smith info->assemblies = A->num_ass; 14493966268fSBarry Smith info->mallocs = A->info.mallocs; 1450d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1451d4002b98SHong Zhang if (A->factortype) { 1452d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1453d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1454d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1455d4002b98SHong Zhang } else { 1456d4002b98SHong Zhang info->fill_ratio_given = 0; 1457d4002b98SHong Zhang info->fill_ratio_needed = 0; 1458d4002b98SHong Zhang info->factor_mallocs = 0; 1459d4002b98SHong Zhang } 1460d4002b98SHong Zhang PetscFunctionReturn(0); 1461d4002b98SHong Zhang } 1462d4002b98SHong Zhang 1463d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1464d4002b98SHong Zhang { 1465d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1466d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1467d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1468d4002b98SHong Zhang MatScalar *vp,value; 1469d4002b98SHong Zhang 1470d4002b98SHong Zhang PetscFunctionBegin; 1471d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1472d4002b98SHong Zhang row = im[k]; 1473d4002b98SHong Zhang if (row < 0) continue; 14746bdcaf15SBarry Smith PetscCheck(row < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1475d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1476d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1477d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1478d4002b98SHong Zhang nrow = a->rlen[row]; 1479d4002b98SHong Zhang low = 0; 1480d4002b98SHong Zhang high = nrow; 1481d4002b98SHong Zhang 1482d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1483d4002b98SHong Zhang col = in[l]; 1484d4002b98SHong Zhang if (col<0) continue; 14856bdcaf15SBarry Smith PetscCheck(col < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1486d4002b98SHong Zhang if (a->roworiented) { 1487d4002b98SHong Zhang value = v[l+k*n]; 1488d4002b98SHong Zhang } else { 1489d4002b98SHong Zhang value = v[k+l*m]; 1490d4002b98SHong Zhang } 1491d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1492d4002b98SHong Zhang 1493ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */ 1494d4002b98SHong Zhang if (col <= lastcol) low = 0; 1495d4002b98SHong Zhang else high = nrow; 1496d4002b98SHong Zhang lastcol = col; 1497d4002b98SHong Zhang while (high-low > 5) { 1498d4002b98SHong Zhang t = (low+high)/2; 1499d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1500d4002b98SHong Zhang else low = t; 1501d4002b98SHong Zhang } 1502d4002b98SHong Zhang for (i=low; i<high; i++) { 1503d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1504d4002b98SHong Zhang if (*(cp+i*8) == col) { 1505d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1506d4002b98SHong Zhang else *(vp+i*8) = value; 1507d4002b98SHong Zhang low = i + 1; 1508d4002b98SHong Zhang goto noinsert; 1509d4002b98SHong Zhang } 1510d4002b98SHong Zhang } 1511d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1512d4002b98SHong Zhang if (nonew == 1) goto noinsert; 151308401ef6SPierre Jolivet PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1514d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1515d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1516d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1517d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1518d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1519d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1520d4002b98SHong Zhang } 1521d4002b98SHong Zhang a->rlen[row]++; 1522d4002b98SHong Zhang *(cp+i*8) = col; 1523d4002b98SHong Zhang *(vp+i*8) = value; 1524d4002b98SHong Zhang a->nz++; 1525d4002b98SHong Zhang A->nonzerostate++; 1526d4002b98SHong Zhang low = i+1; high++; nrow++; 1527d4002b98SHong Zhang noinsert:; 1528d4002b98SHong Zhang } 1529d4002b98SHong Zhang a->rlen[row] = nrow; 1530d4002b98SHong Zhang } 1531d4002b98SHong Zhang PetscFunctionReturn(0); 1532d4002b98SHong Zhang } 1533d4002b98SHong Zhang 1534d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1535d4002b98SHong Zhang { 1536d4002b98SHong Zhang PetscFunctionBegin; 1537d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1538d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1539d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1540d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1541d4002b98SHong Zhang 154208401ef6SPierre Jolivet PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices],PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 15439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->val,a->val,a->sliidx[a->totalslices])); 1544d4002b98SHong Zhang } else { 15459566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 1546d4002b98SHong Zhang } 1547d4002b98SHong Zhang PetscFunctionReturn(0); 1548d4002b98SHong Zhang } 1549d4002b98SHong Zhang 1550d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1551d4002b98SHong Zhang { 1552d4002b98SHong Zhang PetscFunctionBegin; 15539566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,NULL)); 1554d4002b98SHong Zhang PetscFunctionReturn(0); 1555d4002b98SHong Zhang } 1556d4002b98SHong Zhang 1557d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1558d4002b98SHong Zhang { 1559d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1560d4002b98SHong Zhang 1561d4002b98SHong Zhang PetscFunctionBegin; 1562d4002b98SHong Zhang *array = a->val; 1563d4002b98SHong Zhang PetscFunctionReturn(0); 1564d4002b98SHong Zhang } 1565d4002b98SHong Zhang 1566d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1567d4002b98SHong Zhang { 1568d4002b98SHong Zhang PetscFunctionBegin; 1569d4002b98SHong Zhang PetscFunctionReturn(0); 1570d4002b98SHong Zhang } 1571d4002b98SHong Zhang 1572d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1573d4002b98SHong Zhang { 1574d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1575d4002b98SHong Zhang PetscInt i; 1576d4002b98SHong Zhang MatScalar *aval=a->val; 1577d4002b98SHong Zhang 1578d4002b98SHong Zhang PetscFunctionBegin; 1579d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1580d4002b98SHong Zhang PetscFunctionReturn(0); 1581d4002b98SHong Zhang } 1582d4002b98SHong Zhang 1583d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1584d4002b98SHong Zhang { 1585d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1586d4002b98SHong Zhang PetscInt i; 1587d4002b98SHong Zhang MatScalar *aval=a->val; 1588d4002b98SHong Zhang 1589d4002b98SHong Zhang PetscFunctionBegin; 1590d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 15919566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1592d4002b98SHong Zhang PetscFunctionReturn(0); 1593d4002b98SHong Zhang } 1594d4002b98SHong Zhang 1595d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1596d4002b98SHong Zhang { 1597d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1598d4002b98SHong Zhang MatScalar *aval=a->val; 1599d4002b98SHong Zhang PetscScalar oalpha=alpha; 1600d4002b98SHong Zhang PetscBLASInt one=1,size; 1601d4002b98SHong Zhang 1602d4002b98SHong Zhang PetscFunctionBegin; 16039566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices],&size)); 1604d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 16059566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 16069566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(inA)); 1607d4002b98SHong Zhang PetscFunctionReturn(0); 1608d4002b98SHong Zhang } 1609d4002b98SHong Zhang 1610d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1611d4002b98SHong Zhang { 1612d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1613d4002b98SHong Zhang 1614d4002b98SHong Zhang PetscFunctionBegin; 1615d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 16169566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(Y,1,NULL)); 1617d4002b98SHong Zhang } 16189566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 1619d4002b98SHong Zhang PetscFunctionReturn(0); 1620d4002b98SHong Zhang } 1621d4002b98SHong Zhang 1622d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1623d4002b98SHong Zhang { 1624d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1625d4002b98SHong Zhang PetscScalar *x,sum,*t; 1626f4259b30SLisandro Dalcin const MatScalar *idiag=NULL,*mdiag; 1627d4002b98SHong Zhang const PetscScalar *b,*xb; 1628d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1629d4002b98SHong Zhang const PetscInt *diag; 1630d4002b98SHong Zhang 1631d4002b98SHong Zhang PetscFunctionBegin; 1632d4002b98SHong Zhang its = its*lits; 1633d4002b98SHong Zhang 1634d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 16359566063dSJacob Faibussowitsch if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A,omega,fshift)); 1636d4002b98SHong Zhang a->fshift = fshift; 1637d4002b98SHong Zhang a->omega = omega; 1638d4002b98SHong Zhang 1639d4002b98SHong Zhang diag = a->diag; 1640d4002b98SHong Zhang t = a->ssor_work; 1641d4002b98SHong Zhang idiag = a->idiag; 1642d4002b98SHong Zhang mdiag = a->mdiag; 1643d4002b98SHong Zhang 16449566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 16459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 1646d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 164708401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_UPPER,PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 164808401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_LOWER,PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1649aed4548fSBarry Smith PetscCheck(!(flag & SOR_EISENSTAT),PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1650d4002b98SHong Zhang 1651d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1652d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1653d4002b98SHong Zhang for (i=0; i<m; i++) { 1654d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1655d4002b98SHong Zhang sum = b[i]; 1656d4002b98SHong Zhang n = (diag[i]-shift)/8; 1657d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1658d4002b98SHong Zhang t[i] = sum; 1659d4002b98SHong Zhang x[i] = sum*idiag[i]; 1660d4002b98SHong Zhang } 1661d4002b98SHong Zhang xb = t; 16629566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1663d4002b98SHong Zhang } else xb = b; 1664d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1665d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1666d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1667d4002b98SHong Zhang sum = xb[i]; 1668d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1669d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1670d4002b98SHong Zhang if (xb == b) { 1671d4002b98SHong Zhang x[i] = sum*idiag[i]; 1672d4002b98SHong Zhang } else { 1673d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1674d4002b98SHong Zhang } 1675d4002b98SHong Zhang } 16769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1677d4002b98SHong Zhang } 1678d4002b98SHong Zhang its--; 1679d4002b98SHong Zhang } 1680d4002b98SHong Zhang while (its--) { 1681d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1682d4002b98SHong Zhang for (i=0; i<m; i++) { 1683d4002b98SHong Zhang /* lower */ 1684d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1685d4002b98SHong Zhang sum = b[i]; 1686d4002b98SHong Zhang n = (diag[i]-shift)/8; 1687d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1688d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1689d4002b98SHong Zhang /* upper */ 1690d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1691d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1692d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1693d4002b98SHong Zhang } 1694d4002b98SHong Zhang xb = t; 16959566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*a->nz)); 1696d4002b98SHong Zhang } else xb = b; 1697d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1698d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1699d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1700d4002b98SHong Zhang sum = xb[i]; 1701d4002b98SHong Zhang if (xb == b) { 1702d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1703d4002b98SHong Zhang n = a->rlen[i]; 1704d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1705d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1706d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1707d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1708d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1709d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1710d4002b98SHong Zhang } 1711d4002b98SHong Zhang } 1712d4002b98SHong Zhang if (xb == b) { 17139566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*a->nz)); 1714d4002b98SHong Zhang } else { 17159566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1716d4002b98SHong Zhang } 1717d4002b98SHong Zhang } 1718d4002b98SHong Zhang } 17199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 17209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 1721d4002b98SHong Zhang PetscFunctionReturn(0); 1722d4002b98SHong Zhang } 1723d4002b98SHong Zhang 1724d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1725d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17266108893eSStefano Zampini MatGetRow_SeqSELL, 17276108893eSStefano Zampini MatRestoreRow_SeqSELL, 1728d4002b98SHong Zhang MatMult_SeqSELL, 1729d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1730d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1731d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1732f4259b30SLisandro Dalcin NULL, 1733f4259b30SLisandro Dalcin NULL, 1734f4259b30SLisandro Dalcin NULL, 1735f4259b30SLisandro Dalcin /* 10*/ NULL, 1736f4259b30SLisandro Dalcin NULL, 1737f4259b30SLisandro Dalcin NULL, 1738d4002b98SHong Zhang MatSOR_SeqSELL, 1739f4259b30SLisandro Dalcin NULL, 1740d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1741d4002b98SHong Zhang MatEqual_SeqSELL, 1742d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1743d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1744f4259b30SLisandro Dalcin NULL, 1745f4259b30SLisandro Dalcin /* 20*/ NULL, 1746d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1747d4002b98SHong Zhang MatSetOption_SeqSELL, 1748d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1749f4259b30SLisandro Dalcin /* 24*/ NULL, 1750f4259b30SLisandro Dalcin NULL, 1751f4259b30SLisandro Dalcin NULL, 1752f4259b30SLisandro Dalcin NULL, 1753f4259b30SLisandro Dalcin NULL, 1754d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1755f4259b30SLisandro Dalcin NULL, 1756f4259b30SLisandro Dalcin NULL, 1757f4259b30SLisandro Dalcin NULL, 1758f4259b30SLisandro Dalcin NULL, 1759d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1760f4259b30SLisandro Dalcin NULL, 1761f4259b30SLisandro Dalcin NULL, 1762f4259b30SLisandro Dalcin NULL, 1763f4259b30SLisandro Dalcin NULL, 1764f4259b30SLisandro Dalcin /* 39*/ NULL, 1765f4259b30SLisandro Dalcin NULL, 1766f4259b30SLisandro Dalcin NULL, 1767d4002b98SHong Zhang MatGetValues_SeqSELL, 1768d4002b98SHong Zhang MatCopy_SeqSELL, 1769f4259b30SLisandro Dalcin /* 44*/ NULL, 1770d4002b98SHong Zhang MatScale_SeqSELL, 1771d4002b98SHong Zhang MatShift_SeqSELL, 1772f4259b30SLisandro Dalcin NULL, 1773f4259b30SLisandro Dalcin NULL, 1774f4259b30SLisandro Dalcin /* 49*/ NULL, 1775f4259b30SLisandro Dalcin NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1780f4259b30SLisandro Dalcin NULL, 1781f4259b30SLisandro Dalcin NULL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin NULL, 1784f4259b30SLisandro Dalcin /* 59*/ NULL, 1785d4002b98SHong Zhang MatDestroy_SeqSELL, 1786d4002b98SHong Zhang MatView_SeqSELL, 1787f4259b30SLisandro Dalcin NULL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin /* 64*/ NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin /* 69*/ NULL, 1795f4259b30SLisandro Dalcin NULL, 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin /* 74*/ NULL, 1800d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin /* 79*/ NULL, 1805f4259b30SLisandro Dalcin NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin /* 84*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 89*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 94*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin /* 99*/ NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827d4002b98SHong Zhang MatConjugate_SeqSELL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin /*104*/ NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin /*109*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1839f4259b30SLisandro Dalcin /*114*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin /*119*/ NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin /*124*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin /*129*/ NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin /*134*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin /*139*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1868f4259b30SLisandro Dalcin NULL, 1869d70f29a3SPierre Jolivet /*144*/ NULL, 1870d70f29a3SPierre Jolivet NULL, 1871d70f29a3SPierre Jolivet NULL, 1872d70f29a3SPierre Jolivet NULL 1873d4002b98SHong Zhang }; 1874d4002b98SHong Zhang 1875d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1876d4002b98SHong Zhang { 1877d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1878d4002b98SHong Zhang 1879d4002b98SHong Zhang PetscFunctionBegin; 188028b400f6SJacob Faibussowitsch PetscCheck(a->nonew,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1881d4002b98SHong Zhang 1882d4002b98SHong Zhang /* allocate space for values if not already there */ 1883d4002b98SHong Zhang if (!a->saved_values) { 18849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values)); 18859566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar))); 1886d4002b98SHong Zhang } 1887d4002b98SHong Zhang 1888d4002b98SHong Zhang /* copy values over */ 18899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->saved_values,a->val,a->sliidx[a->totalslices])); 1890d4002b98SHong Zhang PetscFunctionReturn(0); 1891d4002b98SHong Zhang } 1892d4002b98SHong Zhang 1893d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1894d4002b98SHong Zhang { 1895d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1896d4002b98SHong Zhang 1897d4002b98SHong Zhang PetscFunctionBegin; 189828b400f6SJacob Faibussowitsch PetscCheck(a->nonew,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 189928b400f6SJacob Faibussowitsch PetscCheck(a->saved_values,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 19009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->val,a->saved_values,a->sliidx[a->totalslices])); 1901d4002b98SHong Zhang PetscFunctionReturn(0); 1902d4002b98SHong Zhang } 1903d4002b98SHong Zhang 1904d4002b98SHong Zhang /*@C 1905d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1906d4002b98SHong Zhang 1907d4002b98SHong Zhang Not Collective 1908d4002b98SHong Zhang 1909d4002b98SHong Zhang Input Parameters: 1910d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1911d4002b98SHong Zhang . array - pointer to the data 1912d4002b98SHong Zhang 1913d4002b98SHong Zhang Level: intermediate 1914d4002b98SHong Zhang 1915db781477SPatrick Sanan .seealso: `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()` 1916d4002b98SHong Zhang @*/ 1917d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1918d4002b98SHong Zhang { 1919d4002b98SHong Zhang PetscFunctionBegin; 1920cac4c232SBarry Smith PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array)); 1921d4002b98SHong Zhang PetscFunctionReturn(0); 1922d4002b98SHong Zhang } 1923d4002b98SHong Zhang 1924d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1925d4002b98SHong Zhang { 1926d4002b98SHong Zhang Mat_SeqSELL *b; 1927d4002b98SHong Zhang PetscMPIInt size; 1928d4002b98SHong Zhang 1929d4002b98SHong Zhang PetscFunctionBegin; 19309566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(citation,&cited)); 19319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 193208401ef6SPierre Jolivet PetscCheck(size <= 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1933d4002b98SHong Zhang 19349566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 1935d4002b98SHong Zhang 1936d4002b98SHong Zhang B->data = (void*)b; 1937d4002b98SHong Zhang 19389566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 1939d4002b98SHong Zhang 1940f4259b30SLisandro Dalcin b->row = NULL; 1941f4259b30SLisandro Dalcin b->col = NULL; 1942f4259b30SLisandro Dalcin b->icol = NULL; 1943d4002b98SHong Zhang b->reallocs = 0; 1944d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1945d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1946d4002b98SHong Zhang b->nonew = 0; 1947f4259b30SLisandro Dalcin b->diag = NULL; 1948f4259b30SLisandro Dalcin b->solve_work = NULL; 1949f4259b30SLisandro Dalcin B->spptr = NULL; 1950f4259b30SLisandro Dalcin b->saved_values = NULL; 1951f4259b30SLisandro Dalcin b->idiag = NULL; 1952f4259b30SLisandro Dalcin b->mdiag = NULL; 1953f4259b30SLisandro Dalcin b->ssor_work = NULL; 1954d4002b98SHong Zhang b->omega = 1.0; 1955d4002b98SHong Zhang b->fshift = 0.0; 1956d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1957d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1958d4002b98SHong Zhang 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL)); 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL)); 19619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL)); 19629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL)); 19639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL)); 19649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL)); 19659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ)); 1966d4002b98SHong Zhang PetscFunctionReturn(0); 1967d4002b98SHong Zhang } 1968d4002b98SHong Zhang 1969d4002b98SHong Zhang /* 1970d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1971d4002b98SHong Zhang */ 1972d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1973d4002b98SHong Zhang { 1974ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL*)C->data,*a = (Mat_SeqSELL*)A->data; 1975d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1976d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1977d4002b98SHong Zhang 1978d4002b98SHong Zhang PetscFunctionBegin; 1979d4002b98SHong Zhang C->factortype = A->factortype; 1980f4259b30SLisandro Dalcin c->row = NULL; 1981f4259b30SLisandro Dalcin c->col = NULL; 1982f4259b30SLisandro Dalcin c->icol = NULL; 1983d4002b98SHong Zhang c->reallocs = 0; 1984d4002b98SHong Zhang C->assembled = PETSC_TRUE; 1985d4002b98SHong Zhang 19869566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&C->rmap)); 19879566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&C->cmap)); 1988d4002b98SHong Zhang 19899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(8*totalslices,&c->rlen)); 19909566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt))); 19919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices+1,&c->sliidx)); 19929566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt))); 1993d4002b98SHong Zhang 1994d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 1995d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 1996d4002b98SHong Zhang 1997d4002b98SHong Zhang /* allocate the matrix space */ 1998d4002b98SHong Zhang if (mallocmatspace) { 19999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx)); 20009566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)))); 2001d4002b98SHong Zhang 2002d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2003d4002b98SHong Zhang 2004d4002b98SHong Zhang if (m > 0) { 20059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->colidx,a->colidx,a->maxallocmat)); 2006d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 20079566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->val,a->val,a->maxallocmat)); 2008d4002b98SHong Zhang } else { 20099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->val,a->maxallocmat)); 2010d4002b98SHong Zhang } 2011d4002b98SHong Zhang } 2012d4002b98SHong Zhang } 2013d4002b98SHong Zhang 2014d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2015d4002b98SHong Zhang c->roworiented = a->roworiented; 2016d4002b98SHong Zhang c->nonew = a->nonew; 2017d4002b98SHong Zhang if (a->diag) { 20189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&c->diag)); 20199566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt))); 2020d4002b98SHong Zhang for (i=0; i<m; i++) { 2021d4002b98SHong Zhang c->diag[i] = a->diag[i]; 2022d4002b98SHong Zhang } 2023f4259b30SLisandro Dalcin } else c->diag = NULL; 2024d4002b98SHong Zhang 2025f4259b30SLisandro Dalcin c->solve_work = NULL; 2026f4259b30SLisandro Dalcin c->saved_values = NULL; 2027f4259b30SLisandro Dalcin c->idiag = NULL; 2028f4259b30SLisandro Dalcin c->ssor_work = NULL; 2029d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2030d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2031d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2032d4002b98SHong Zhang 2033d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2034d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2035d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2036d4002b98SHong Zhang c->nz = a->nz; 2037d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2038d4002b98SHong Zhang 2039d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2040d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2041d4002b98SHong Zhang 20429566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist)); 2043d4002b98SHong Zhang PetscFunctionReturn(0); 2044d4002b98SHong Zhang } 2045d4002b98SHong Zhang 2046d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 2047d4002b98SHong Zhang { 2048d4002b98SHong Zhang PetscFunctionBegin; 20499566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),B)); 20509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n)); 2051d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 20529566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(*B,A,A)); 2053d4002b98SHong Zhang } 20549566063dSJacob Faibussowitsch PetscCall(MatSetType(*B,((PetscObject)A)->type_name)); 20559566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE)); 2056d4002b98SHong Zhang PetscFunctionReturn(0); 2057d4002b98SHong Zhang } 2058d4002b98SHong Zhang 2059ed73aabaSBarry Smith /*MC 2060ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices, 2061ed73aabaSBarry Smith based on the sliced Ellpack format 2062ed73aabaSBarry Smith 2063ed73aabaSBarry Smith Options Database Keys: 2064ed73aabaSBarry Smith . -mat_type seqsell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 2065ed73aabaSBarry Smith 2066ed73aabaSBarry Smith Level: beginner 2067ed73aabaSBarry Smith 2068db781477SPatrick Sanan .seealso: `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 2069ed73aabaSBarry Smith M*/ 2070ed73aabaSBarry Smith 2071ed73aabaSBarry Smith /*MC 2072ed73aabaSBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 2073ed73aabaSBarry Smith 2074ed73aabaSBarry Smith This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 2075ed73aabaSBarry Smith and MATMPISELL otherwise. As a result, for single process communicators, 2076ed73aabaSBarry Smith MatSeqSELLSetPreallocation() is supported, and similarly MatMPISELLSetPreallocation() is supported 2077ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 2078ed73aabaSBarry Smith the above preallocation routines for simplicity. 2079ed73aabaSBarry Smith 2080ed73aabaSBarry Smith Options Database Keys: 2081ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 2082ed73aabaSBarry Smith 2083ed73aabaSBarry Smith Level: beginner 2084ed73aabaSBarry Smith 2085ed73aabaSBarry Smith Notes: 2086ed73aabaSBarry Smith This format is only supported for real scalars, double precision, and 32 bit indices (the defaults). 2087ed73aabaSBarry Smith 2088ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of 2089ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement. 2090ed73aabaSBarry Smith 2091ed73aabaSBarry Smith Developer Notes: 2092ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance. 2093ed73aabaSBarry Smith 2094ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8 2095ed73aabaSBarry Smith .vb 2096ed73aabaSBarry Smith (2 0 3 4) 2097ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0) 2098ed73aabaSBarry Smith (0 0 7 8) 2099ed73aabaSBarry Smith (0 0 9 9) 2100ed73aabaSBarry Smith 2101ed73aabaSBarry Smith symbolically the Ellpack format can be written as 2102ed73aabaSBarry Smith 2103ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |) 2104ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |) 2105ed73aabaSBarry Smith -------- --------- 2106ed73aabaSBarry Smith (7 8 |) (2 3 |) 2107ed73aabaSBarry Smith (9 9 |) (2 3 |) 2108ed73aabaSBarry Smith 2109ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case). 2110ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and 2111ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice. 2112ed73aabaSBarry Smith 2113ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3) 2114ed73aabaSBarry Smith 2115ed73aabaSBarry Smith .ve 2116ed73aabaSBarry Smith 2117ed73aabaSBarry Smith See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance. 2118ed73aabaSBarry Smith 2119ed73aabaSBarry Smith References: 2120606c0280SSatish Balay . * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}, 2121ed73aabaSBarry Smith Proceedings of the 47th International Conference on Parallel Processing, 2018. 2122ed73aabaSBarry Smith 2123db781477SPatrick Sanan .seealso: `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ` 2124ed73aabaSBarry Smith M*/ 2125ed73aabaSBarry Smith 2126d4002b98SHong Zhang /*@C 2127d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 2128d4002b98SHong Zhang 2129ed73aabaSBarry Smith Collective on comm 2130d4002b98SHong Zhang 2131d4002b98SHong Zhang Input Parameters: 2132d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2133d4002b98SHong Zhang . m - number of rows 2134d4002b98SHong Zhang . n - number of columns 2135d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2136d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2137d4002b98SHong Zhang (possibly different for each row) or NULL 2138d4002b98SHong Zhang 2139d4002b98SHong Zhang Output Parameter: 2140d4002b98SHong Zhang . A - the matrix 2141d4002b98SHong Zhang 2142d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2143f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2144d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 2145d4002b98SHong Zhang 2146d4002b98SHong Zhang Notes: 2147d4002b98SHong Zhang If nnz is given then nz is ignored 2148d4002b98SHong Zhang 2149d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2150d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2151d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2152d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2153d4002b98SHong Zhang 2154d4002b98SHong Zhang Level: intermediate 2155d4002b98SHong Zhang 2156db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL` 2157d4002b98SHong Zhang 2158d4002b98SHong Zhang @*/ 2159d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2160d4002b98SHong Zhang { 2161d4002b98SHong Zhang PetscFunctionBegin; 21629566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 21639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,m,n)); 21649566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQSELL)); 21659566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen)); 2166d4002b98SHong Zhang PetscFunctionReturn(0); 2167d4002b98SHong Zhang } 2168d4002b98SHong Zhang 2169d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2170d4002b98SHong Zhang { 2171d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2172d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2173d4002b98SHong Zhang 2174d4002b98SHong Zhang PetscFunctionBegin; 2175d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2176d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2177d4002b98SHong Zhang *flg = PETSC_FALSE; 2178d4002b98SHong Zhang PetscFunctionReturn(0); 2179d4002b98SHong Zhang } 2180d4002b98SHong Zhang /* if the a->colidx are the same */ 21819566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->colidx,b->colidx,a->sliidx[totalslices],flg)); 2182d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2183d4002b98SHong Zhang /* if a->val are the same */ 21849566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->val,b->val,a->sliidx[totalslices],flg)); 2185d4002b98SHong Zhang PetscFunctionReturn(0); 2186d4002b98SHong Zhang } 2187d4002b98SHong Zhang 2188d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2189d4002b98SHong Zhang { 2190d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2191d4002b98SHong Zhang 2192d4002b98SHong Zhang PetscFunctionBegin; 2193d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2194d4002b98SHong Zhang PetscFunctionReturn(0); 2195d4002b98SHong Zhang } 2196d4002b98SHong Zhang 2197d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2198d4002b98SHong Zhang { 2199d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2200d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2201d4002b98SHong Zhang PetscInt i; 2202d4002b98SHong Zhang PetscScalar *val = a->val; 2203d4002b98SHong Zhang 2204d4002b98SHong Zhang PetscFunctionBegin; 2205d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2206d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2207d4002b98SHong Zhang } 2208d4002b98SHong Zhang #else 2209d4002b98SHong Zhang PetscFunctionBegin; 2210d4002b98SHong Zhang #endif 2211d4002b98SHong Zhang PetscFunctionReturn(0); 2212d4002b98SHong Zhang } 2213