xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 38efe8ef79557fb58b73d4ce033b31201f20abd0)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h>  /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H)
9d4002b98SHong Zhang #include <immintrin.h>
10d4002b98SHong Zhang 
11d4002b98SHong Zhang #if !defined(_MM_SCALE_8)
12d4002b98SHong Zhang #define _MM_SCALE_8    8
13d4002b98SHong Zhang #endif
14d4002b98SHong Zhang 
15d4002b98SHong Zhang #if defined(__AVX512F__)
16d4002b98SHong Zhang /* these do not work
17d4002b98SHong Zhang  vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
18d4002b98SHong Zhang  vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
19d4002b98SHong Zhang */
20d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
21d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
22d4002b98SHong Zhang vec_idx  = _mm256_load_si256((__m256i const*)acolidx); \
23d4002b98SHong Zhang vec_vals = _mm512_load_pd(aval); \
24d4002b98SHong Zhang vec_x    = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \
25d4002b98SHong Zhang vec_y    = _mm512_fmadd_pd(vec_x,vec_vals,vec_y);
26d4002b98SHong Zhang 
27d4002b98SHong Zhang #endif
28d4002b98SHong Zhang #endif  /* PETSC_HAVE_IMMINTRIN_H */
29d4002b98SHong Zhang 
30d4002b98SHong Zhang /*@C
31d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
32d4002b98SHong Zhang  the user should preallocate the matrix storage by setting the parameter nz
33d4002b98SHong Zhang  (or the array nnz).  By setting these parameters accurately, performance
34d4002b98SHong Zhang  during matrix assembly can be increased significantly.
35d4002b98SHong Zhang 
36d4002b98SHong Zhang  Collective on MPI_Comm
37d4002b98SHong Zhang 
38d4002b98SHong Zhang  Input Parameters:
39d4002b98SHong Zhang  +  B - The matrix
40d4002b98SHong Zhang  .  nz - number of nonzeros per row (same for all rows)
41d4002b98SHong Zhang  -  nnz - array containing the number of nonzeros in the various rows
42d4002b98SHong Zhang  (possibly different for each row) or NULL
43d4002b98SHong Zhang 
44d4002b98SHong Zhang  Notes:
45d4002b98SHong Zhang  If nnz is given then nz is ignored.
46d4002b98SHong Zhang 
47d4002b98SHong Zhang  Specify the preallocated storage with either nz or nnz (not both).
48d4002b98SHong Zhang  Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
49d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
50d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
51d4002b98SHong Zhang 
52d4002b98SHong Zhang  You can call MatGetInfo() to get information on how effective the preallocation was;
53d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
54d4002b98SHong Zhang  You can also run with the option -info and look for messages with the string
55d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
56d4002b98SHong Zhang 
57d4002b98SHong Zhang  Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix
58d4002b98SHong Zhang  entries or columns indices.
59d4002b98SHong Zhang 
60d4002b98SHong Zhang  The maximum number of nonzeos in any row should be as accuate as possible.
61d4002b98SHong Zhang  If it is underesitmated, you will get bad performance due to reallocation
62d4002b98SHong Zhang  (MatSeqXSELLReallocateSELL).
63d4002b98SHong Zhang 
64d4002b98SHong Zhang  Level: intermediate
65d4002b98SHong Zhang 
66d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo()
67d4002b98SHong Zhang 
68d4002b98SHong Zhang  @*/
69d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])
70d4002b98SHong Zhang {
71d4002b98SHong Zhang   PetscErrorCode ierr;
72d4002b98SHong Zhang 
73d4002b98SHong Zhang   PetscFunctionBegin;
74d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
75d4002b98SHong Zhang   PetscValidType(B,1);
76d4002b98SHong Zhang   ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr);
77d4002b98SHong Zhang   PetscFunctionReturn(0);
78d4002b98SHong Zhang }
79d4002b98SHong Zhang 
80d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])
81d4002b98SHong Zhang {
82d4002b98SHong Zhang   Mat_SeqSELL    *b;
83d4002b98SHong Zhang   PetscInt       i,j,totalslices;
84d4002b98SHong Zhang   PetscBool      skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE;
85d4002b98SHong Zhang   PetscErrorCode ierr;
86d4002b98SHong Zhang 
87d4002b98SHong Zhang   PetscFunctionBegin;
88d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
89d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
90d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
91d4002b98SHong Zhang     maxallocrow    = 0;
92d4002b98SHong Zhang   }
93d4002b98SHong Zhang 
94d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
95d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
96d4002b98SHong Zhang 
97d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
98d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
99d4002b98SHong Zhang   if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow);
100d4002b98SHong Zhang   if (rlen) {
101d4002b98SHong Zhang     for (i=0; i<B->rmap->n; i++) {
102d4002b98SHong Zhang       if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]);
103d4002b98SHong Zhang       if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n);
104d4002b98SHong Zhang     }
105d4002b98SHong Zhang   }
106d4002b98SHong Zhang 
107d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
108d4002b98SHong Zhang 
109d4002b98SHong Zhang   b = (Mat_SeqSELL*)B->data;
110d4002b98SHong Zhang 
111d4002b98SHong Zhang   totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */
112d4002b98SHong Zhang   b->totalslices = totalslices;
113d4002b98SHong Zhang   if (!skipallocation) {
114d4002b98SHong Zhang     if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n);
115d4002b98SHong Zhang 
116d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
117d4002b98SHong Zhang       ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr);
118d4002b98SHong Zhang       ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
119d4002b98SHong Zhang     }
120d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
121d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
122d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
123d4002b98SHong Zhang       for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow;
124d4002b98SHong Zhang     } else {
125d4002b98SHong Zhang       maxallocrow = 0;
126d4002b98SHong Zhang       b->sliidx[0] = 0;
127d4002b98SHong Zhang       for (i=1; i<totalslices; i++) {
128d4002b98SHong Zhang         b->sliidx[i] = 0;
129d4002b98SHong Zhang         for (j=0;j<8;j++) {
130d4002b98SHong Zhang           b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]);
131d4002b98SHong Zhang         }
132d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i],maxallocrow);
133d4002b98SHong Zhang         b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i];
134d4002b98SHong Zhang       }
135d4002b98SHong Zhang       /* last slice */
136d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
137d4002b98SHong Zhang       for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]);
138d4002b98SHong Zhang       maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow);
139d4002b98SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices];
140d4002b98SHong Zhang     }
141d4002b98SHong Zhang 
142d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
143d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
144d4002b98SHong Zhang     ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr);
145d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
146d4002b98SHong Zhang     ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr);
147d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
148d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
149d4002b98SHong Zhang     ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr);
150d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr);
151d4002b98SHong Zhang 
152d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
153d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
154d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
155d4002b98SHong Zhang   } else {
156d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
157d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
158d4002b98SHong Zhang   }
159d4002b98SHong Zhang 
160d4002b98SHong Zhang   b->nz               = 0;
161d4002b98SHong Zhang   b->maxallocrow      = maxallocrow;
162d4002b98SHong Zhang   b->rlenmax          = maxallocrow;
163d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
164d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
165d4002b98SHong Zhang   if (realalloc) {
166d4002b98SHong Zhang     ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
167d4002b98SHong Zhang   }
168d4002b98SHong Zhang   PetscFunctionReturn(0);
169d4002b98SHong Zhang }
170d4002b98SHong Zhang 
171d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
172d4002b98SHong Zhang {
173d4002b98SHong Zhang   Mat            B;
174d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data;
175d4002b98SHong Zhang   PetscInt       i,j,row;
176d4002b98SHong Zhang   PetscBool      isnonzero;
177d4002b98SHong Zhang   PetscErrorCode ierr;
178d4002b98SHong Zhang 
179d4002b98SHong Zhang   PetscFunctionBegin;
180d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
181d4002b98SHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
182d4002b98SHong Zhang   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
183d4002b98SHong Zhang   ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr);
184d4002b98SHong Zhang   ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
185d4002b98SHong Zhang 
186d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
187d4002b98SHong Zhang     for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
188d4002b98SHong Zhang       isnonzero = (PetscBool)((j-a->sliidx[i])/8 < a->rlen[8*i+row]);
189d4002b98SHong Zhang       if (isnonzero) {
190d4002b98SHong Zhang         ierr = MatSetValue(B,8*i+row,a->colidx[j],a->val[j],INSERT_VALUES);CHKERRQ(ierr);
191d4002b98SHong Zhang       }
192d4002b98SHong Zhang     }
193d4002b98SHong Zhang   }
194d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
195d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
197d4002b98SHong Zhang 
198d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
199d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
200d4002b98SHong Zhang   } else {
201d4002b98SHong Zhang     *newmat = B;
202d4002b98SHong Zhang   }
203d4002b98SHong Zhang   PetscFunctionReturn(0);
204d4002b98SHong Zhang }
205d4002b98SHong Zhang 
206d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
207d4002b98SHong Zhang 
208d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
209d4002b98SHong Zhang {
210d4002b98SHong Zhang   Mat               B;
211d4002b98SHong Zhang   Mat_SeqAIJ        *a=(Mat_SeqAIJ*)A->data;
212d4002b98SHong Zhang   PetscInt          *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols;
213d4002b98SHong Zhang   const PetscInt    *cols;
214d4002b98SHong Zhang   const PetscScalar *vals;
215d4002b98SHong Zhang   PetscErrorCode    ierr;
216d4002b98SHong Zhang 
217d4002b98SHong Zhang   PetscFunctionBegin;
218d4002b98SHong Zhang   if (A->rmap->bs > 1) {
219d4002b98SHong Zhang     ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr);
220d4002b98SHong Zhang     PetscFunctionReturn(0);
221d4002b98SHong Zhang   }
222d4002b98SHong Zhang   /* Can we just use ilen? */
223d4002b98SHong Zhang   ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr);
224d4002b98SHong Zhang   for (i=0; i<m; i++) {
225d4002b98SHong Zhang     rowlengths[i] = ai[i+1] - ai[i];
226d4002b98SHong Zhang   }
227d4002b98SHong Zhang 
228d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
229d4002b98SHong Zhang   ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
230d4002b98SHong Zhang   ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr);
231d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr);
232d4002b98SHong Zhang   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
233d4002b98SHong Zhang 
234d4002b98SHong Zhang   ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
235d4002b98SHong Zhang 
236d4002b98SHong Zhang   for (row=0; row<m; row++) {
237d4002b98SHong Zhang     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
238d4002b98SHong Zhang     ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
239d4002b98SHong Zhang     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
240d4002b98SHong Zhang   }
241d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
242d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
243d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
244d4002b98SHong Zhang 
245d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
246d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
247d4002b98SHong Zhang   } else {
248d4002b98SHong Zhang     *newmat = B;
249d4002b98SHong Zhang   }
250d4002b98SHong Zhang   PetscFunctionReturn(0);
251d4002b98SHong Zhang }
252d4002b98SHong Zhang 
253d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy)
254d4002b98SHong Zhang {
255d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
256d4002b98SHong Zhang   PetscScalar       *y;
257d4002b98SHong Zhang   const PetscScalar *x;
258d4002b98SHong Zhang   const MatScalar   *aval=a->val;
259d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
260d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
261d4002b98SHong Zhang   PetscInt          i,j=0;
262d4002b98SHong Zhang   PetscErrorCode    ierr;
263d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
264d4002b98SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
265d4002b98SHong Zhang   __m256i           vec_idx;
266d4002b98SHong Zhang   __mmask8          mask;
267d4002b98SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
268d4002b98SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
269d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
270d4002b98SHong Zhang   __m128d           vec_x_tmp;
271d4002b98SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
272d4002b98SHong Zhang   MatScalar         yval;
273d4002b98SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
274d4002b98SHong Zhang #else
275d4002b98SHong Zhang   PetscScalar       sum[8];
276d4002b98SHong Zhang #endif
277d4002b98SHong Zhang 
278d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
279d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
280d4002b98SHong Zhang #endif
281d4002b98SHong Zhang 
282d4002b98SHong Zhang   PetscFunctionBegin;
283d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
284d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
285d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
286d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
287d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
288d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
289d4002b98SHong Zhang 
290d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
291d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
292d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
293d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
294d4002b98SHong Zhang 
295*38efe8efSHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
296d4002b98SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
297d4002b98SHong Zhang     case 3:
298d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
299d4002b98SHong Zhang       acolidx += 8; aval += 8;
300d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
301d4002b98SHong Zhang       acolidx += 8; aval += 8;
302d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
303d4002b98SHong Zhang       acolidx += 8; aval += 8;
304d4002b98SHong Zhang       j += 3;
305d4002b98SHong Zhang       break;
306d4002b98SHong Zhang     case 2:
307d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
308d4002b98SHong Zhang       acolidx += 8; aval += 8;
309d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
310d4002b98SHong Zhang       acolidx += 8; aval += 8;
311d4002b98SHong Zhang       j += 2;
312d4002b98SHong Zhang       break;
313d4002b98SHong Zhang     case 1:
314d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
315d4002b98SHong Zhang       acolidx += 8; aval += 8;
316d4002b98SHong Zhang       j += 1;
317d4002b98SHong Zhang       break;
318d4002b98SHong Zhang     }
319d4002b98SHong Zhang     #pragma novector
320d4002b98SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
321d4002b98SHong Zhang       /*
322d4002b98SHong Zhang       vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
323d4002b98SHong Zhang       vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
324d4002b98SHong Zhang       */
325d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
326d4002b98SHong Zhang       acolidx += 8; aval += 8;
327d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
328d4002b98SHong Zhang       acolidx += 8; aval += 8;
329d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
330d4002b98SHong Zhang       acolidx += 8; aval += 8;
331d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
332d4002b98SHong Zhang       acolidx += 8; aval += 8;
333d4002b98SHong Zhang     }
334d4002b98SHong Zhang 
335d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
336d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
337d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
338d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
339d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
340d4002b98SHong Zhang       _mm512_mask_store_pd(&y[8*i],mask,vec_y);
341d4002b98SHong Zhang     } else {
342d4002b98SHong Zhang       _mm512_store_pd(&y[8*i],vec_y);
343d4002b98SHong Zhang     }
344d4002b98SHong Zhang   }
345d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
346d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
347d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
348d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
349d4002b98SHong Zhang 
350d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
351d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
352d4002b98SHong Zhang 
353d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
354d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
355d4002b98SHong Zhang       rows_left = A->rmap->n - 8*i;
356d4002b98SHong Zhang       for (r=0; r<rows_left; ++r) {
357d4002b98SHong Zhang         yval = (MatScalar)0;
358d4002b98SHong Zhang         row = 8*i + r;
359d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
360d4002b98SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]];
361d4002b98SHong Zhang         y[row] = yval;
362d4002b98SHong Zhang       }
363d4002b98SHong Zhang       break;
364d4002b98SHong Zhang     }
365d4002b98SHong Zhang 
366d4002b98SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
367d4002b98SHong Zhang     for (; j<a->sliidx[i+1]; j+=8) {
368d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
369d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
370d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
371d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
372d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
373d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
374d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
375d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
376d4002b98SHong Zhang       aval     += 4;
377d4002b98SHong Zhang 
378d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
379d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
380d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
381d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
382d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
383d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
384d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
385d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
386d4002b98SHong Zhang       aval     += 4;
387d4002b98SHong Zhang     }
388d4002b98SHong Zhang 
389d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8,     vec_y);
390d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8 + 4, vec_y2);
391d4002b98SHong Zhang   }
392d4002b98SHong Zhang 
393d4002b98SHong Zhang #else
394d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
395d4002b98SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
396d4002b98SHong Zhang 
397d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
398d4002b98SHong Zhang       sum[0] += aval[j]*x[acolidx[j]];
399d4002b98SHong Zhang       sum[1] += aval[j+1]*x[acolidx[j+1]];
400d4002b98SHong Zhang       sum[2] += aval[j+2]*x[acolidx[j+2]];
401d4002b98SHong Zhang       sum[3] += aval[j+3]*x[acolidx[j+3]];
402d4002b98SHong Zhang       sum[4] += aval[j+4]*x[acolidx[j+4]];
403d4002b98SHong Zhang       sum[5] += aval[j+5]*x[acolidx[j+5]];
404d4002b98SHong Zhang       sum[6] += aval[j+6]*x[acolidx[j+6]];
405d4002b98SHong Zhang       sum[7] += aval[j+7]*x[acolidx[j+7]];
406d4002b98SHong Zhang     }
407d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */
408d4002b98SHong Zhang       for(j=0;j<(A->rmap->n & 0x07);j++) y[8*i+j] = sum[j];
409d4002b98SHong Zhang     } else {
410d4002b98SHong Zhang       y[8*i]   = sum[0];
411d4002b98SHong Zhang       y[8*i+1] = sum[1];
412d4002b98SHong Zhang       y[8*i+2] = sum[2];
413d4002b98SHong Zhang       y[8*i+3] = sum[3];
414d4002b98SHong Zhang       y[8*i+4] = sum[4];
415d4002b98SHong Zhang       y[8*i+5] = sum[5];
416d4002b98SHong Zhang       y[8*i+6] = sum[6];
417d4002b98SHong Zhang       y[8*i+7] = sum[7];
418d4002b98SHong Zhang     }
419d4002b98SHong Zhang   }
420d4002b98SHong Zhang #endif
421d4002b98SHong Zhang 
422d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */
423d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
424d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
425d4002b98SHong Zhang   PetscFunctionReturn(0);
426d4002b98SHong Zhang }
427d4002b98SHong Zhang 
428d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
429d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)
430d4002b98SHong Zhang {
431d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
432d4002b98SHong Zhang   PetscScalar       *y,*z;
433d4002b98SHong Zhang   const PetscScalar *x;
434d4002b98SHong Zhang   const MatScalar   *aval=a->val;
435d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
436d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
437d4002b98SHong Zhang   PetscInt          i,j;
438d4002b98SHong Zhang   PetscErrorCode    ierr;
439d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)  && !defined(PETSC_USE_64BIT_INDICES)
440d4002b98SHong Zhang   __m512d           vec_x,vec_y,vec_z,vec_vals;
441d4002b98SHong Zhang   __m256i           vec_idx;
442d4002b98SHong Zhang   __mmask8          mask;
443d4002b98SHong Zhang #else
444d4002b98SHong Zhang   PetscScalar       sum[8];
445d4002b98SHong Zhang #endif
446d4002b98SHong Zhang 
447d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
448d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
449d4002b98SHong Zhang #endif
450d4002b98SHong Zhang 
451d4002b98SHong Zhang   PetscFunctionBegin;
452d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
453d4002b98SHong Zhang   ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
454d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
455d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
456d4002b98SHong Zhang     vec_y = _mm512_load_pd(&y[8*i]);
457d4002b98SHong Zhang     #pragma novector
458d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
459d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
460d4002b98SHong Zhang       acolidx += 8; aval += 8;
461d4002b98SHong Zhang     }
462d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
463d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
464d4002b98SHong Zhang       _mm512_mask_store_pd(&z[8*i],mask,vec_y);
465d4002b98SHong Zhang     } else {
466d4002b98SHong Zhang       _mm512_store_pd(&z[8*i],vec_y);
467d4002b98SHong Zhang     }
468d4002b98SHong Zhang #else
469d4002b98SHong Zhang     sum[0] = y[8*i];
470d4002b98SHong Zhang     sum[1] = y[8*i+1];
471d4002b98SHong Zhang     sum[2] = y[8*i+2];
472d4002b98SHong Zhang     sum[3] = y[8*i+3];
473d4002b98SHong Zhang     sum[4] = y[8*i+4];
474d4002b98SHong Zhang     sum[5] = y[8*i+5];
475d4002b98SHong Zhang     sum[6] = y[8*i+6];
476d4002b98SHong Zhang     sum[7] = y[8*i+7];
477d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
478d4002b98SHong Zhang       sum[0] += aval[j]*x[acolidx[j]];
479d4002b98SHong Zhang       sum[1] += aval[j+1]*x[acolidx[j+1]];
480d4002b98SHong Zhang       sum[2] += aval[j+2]*x[acolidx[j+2]];
481d4002b98SHong Zhang       sum[3] += aval[j+3]*x[acolidx[j+3]];
482d4002b98SHong Zhang       sum[4] += aval[j+4]*x[acolidx[j+4]];
483d4002b98SHong Zhang       sum[5] += aval[j+5]*x[acolidx[j+5]];
484d4002b98SHong Zhang       sum[6] += aval[j+6]*x[acolidx[j+6]];
485d4002b98SHong Zhang       sum[7] += aval[j+7]*x[acolidx[j+7]];
486d4002b98SHong Zhang     }
487d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */
488d4002b98SHong Zhang       for(j=0;j<(A->rmap->n & 0x07);j++) z[8*i+j] = sum[j];
489d4002b98SHong Zhang     } else {
490d4002b98SHong Zhang       z[8*i]   = sum[0];
491d4002b98SHong Zhang       z[8*i+1] = sum[1];
492d4002b98SHong Zhang       z[8*i+2] = sum[2];
493d4002b98SHong Zhang       z[8*i+3] = sum[3];
494d4002b98SHong Zhang       z[8*i+4] = sum[4];
495d4002b98SHong Zhang       z[8*i+5] = sum[5];
496d4002b98SHong Zhang       z[8*i+6] = sum[6];
497d4002b98SHong Zhang       z[8*i+7] = sum[7];
498d4002b98SHong Zhang     }
499d4002b98SHong Zhang #endif
500d4002b98SHong Zhang   }
501d4002b98SHong Zhang 
502d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
503d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
504d4002b98SHong Zhang   ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
505d4002b98SHong Zhang   PetscFunctionReturn(0);
506d4002b98SHong Zhang }
507d4002b98SHong Zhang 
508d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)
509d4002b98SHong Zhang {
510d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
511d4002b98SHong Zhang   PetscScalar       *y;
512d4002b98SHong Zhang   const PetscScalar *x;
513d4002b98SHong Zhang   const MatScalar   *aval=a->val;
514d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
515d4002b98SHong Zhang   PetscInt          i,j,row;
516d4002b98SHong Zhang   PetscBool         isnonzero;
517d4002b98SHong Zhang   PetscErrorCode    ierr;
518d4002b98SHong Zhang 
519d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
520d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
521d4002b98SHong Zhang #endif
522d4002b98SHong Zhang 
523d4002b98SHong Zhang   PetscFunctionBegin;
524d4002b98SHong Zhang   if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); }
525d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
526d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
527d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
528d4002b98SHong Zhang     for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
529d4002b98SHong Zhang       isnonzero = (PetscBool)((j-a->sliidx[i])/8 < a->rlen[8*i+row]);
530d4002b98SHong Zhang       if (isnonzero) y[acolidx[j]] += aval[j]*x[8*i+row];
531d4002b98SHong Zhang     }
532d4002b98SHong Zhang   }
533d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr);
534d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
535d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
536d4002b98SHong Zhang   PetscFunctionReturn(0);
537d4002b98SHong Zhang }
538d4002b98SHong Zhang 
539d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)
540d4002b98SHong Zhang {
541d4002b98SHong Zhang   PetscErrorCode ierr;
542d4002b98SHong Zhang 
543d4002b98SHong Zhang   PetscFunctionBegin;
544d4002b98SHong Zhang   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
545d4002b98SHong Zhang   ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr);
546d4002b98SHong Zhang   PetscFunctionReturn(0);
547d4002b98SHong Zhang }
548d4002b98SHong Zhang 
549d4002b98SHong Zhang /*
550d4002b98SHong Zhang      Checks for missing diagonals
551d4002b98SHong Zhang */
552d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool  *missing,PetscInt *d)
553d4002b98SHong Zhang {
554d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
555d4002b98SHong Zhang   PetscInt    *diag,i;
556d4002b98SHong Zhang 
557d4002b98SHong Zhang   PetscFunctionBegin;
558d4002b98SHong Zhang   *missing = PETSC_FALSE;
559d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
560d4002b98SHong Zhang     *missing = PETSC_TRUE;
561d4002b98SHong Zhang     if (d) *d = 0;
562d4002b98SHong Zhang     PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");
563d4002b98SHong Zhang   } else {
564d4002b98SHong Zhang     diag = a->diag;
565d4002b98SHong Zhang     for (i=0; i<A->rmap->n; i++) {
566d4002b98SHong Zhang       if (diag[i] == -1) {
567d4002b98SHong Zhang         *missing = PETSC_TRUE;
568d4002b98SHong Zhang         if (d) *d = i;
569d4002b98SHong Zhang         PetscInfo1(A,"Matrix is missing diagonal number %D\n",i);
570d4002b98SHong Zhang         break;
571d4002b98SHong Zhang       }
572d4002b98SHong Zhang     }
573d4002b98SHong Zhang   }
574d4002b98SHong Zhang   PetscFunctionReturn(0);
575d4002b98SHong Zhang }
576d4002b98SHong Zhang 
577d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
578d4002b98SHong Zhang {
579d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
580d4002b98SHong Zhang   PetscInt       i,j,m=A->rmap->n,shift;
581d4002b98SHong Zhang   PetscErrorCode ierr;
582d4002b98SHong Zhang 
583d4002b98SHong Zhang   PetscFunctionBegin;
584d4002b98SHong Zhang   if (!a->diag) {
585d4002b98SHong Zhang     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
586d4002b98SHong Zhang     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
587d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
588d4002b98SHong Zhang   }
589d4002b98SHong Zhang   for (i=0; i<m; i++) { /* loop over rows */
590d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
591d4002b98SHong Zhang     a->diag[i] = -1;
592d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
593d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
594d4002b98SHong Zhang         a->diag[i] = shift+j*8;
595d4002b98SHong Zhang         break;
596d4002b98SHong Zhang       }
597d4002b98SHong Zhang     }
598d4002b98SHong Zhang   }
599d4002b98SHong Zhang   PetscFunctionReturn(0);
600d4002b98SHong Zhang }
601d4002b98SHong Zhang 
602d4002b98SHong Zhang /*
603d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
604d4002b98SHong Zhang */
605d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)
606d4002b98SHong Zhang {
607d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*) A->data;
608d4002b98SHong Zhang   PetscInt       i,*diag,m = A->rmap->n;
609d4002b98SHong Zhang   MatScalar      *val = a->val;
610d4002b98SHong Zhang   PetscScalar    *idiag,*mdiag;
611d4002b98SHong Zhang   PetscErrorCode ierr;
612d4002b98SHong Zhang 
613d4002b98SHong Zhang   PetscFunctionBegin;
614d4002b98SHong Zhang   if (a->idiagvalid) PetscFunctionReturn(0);
615d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
616d4002b98SHong Zhang   diag = a->diag;
617d4002b98SHong Zhang   if (!a->idiag) {
618d4002b98SHong Zhang     ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr);
619d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr);
620d4002b98SHong Zhang     val  = a->val;
621d4002b98SHong Zhang   }
622d4002b98SHong Zhang   mdiag = a->mdiag;
623d4002b98SHong Zhang   idiag = a->idiag;
624d4002b98SHong Zhang 
625d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
626d4002b98SHong Zhang     for (i=0; i<m; i++) {
627d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
628d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
629d4002b98SHong Zhang         if (PetscRealPart(fshift)) {
630d4002b98SHong Zhang           ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr);
631d4002b98SHong Zhang           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
632d4002b98SHong Zhang           A->factorerror_zeropivot_value = 0.0;
633d4002b98SHong Zhang           A->factorerror_zeropivot_row   = i;
634d4002b98SHong Zhang         } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i);
635d4002b98SHong Zhang       }
636d4002b98SHong Zhang       idiag[i] = 1.0/val[diag[i]];
637d4002b98SHong Zhang     }
638d4002b98SHong Zhang     ierr = PetscLogFlops(m);CHKERRQ(ierr);
639d4002b98SHong Zhang   } else {
640d4002b98SHong Zhang     for (i=0; i<m; i++) {
641d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
642d4002b98SHong Zhang       idiag[i] = omega/(fshift + val[diag[i]]);
643d4002b98SHong Zhang     }
644d4002b98SHong Zhang     ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr);
645d4002b98SHong Zhang   }
646d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
647d4002b98SHong Zhang   PetscFunctionReturn(0);
648d4002b98SHong Zhang }
649d4002b98SHong Zhang 
650d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
651d4002b98SHong Zhang {
652d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
653d4002b98SHong Zhang   PetscErrorCode ierr;
654d4002b98SHong Zhang 
655d4002b98SHong Zhang   PetscFunctionBegin;
656d4002b98SHong Zhang   ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr);
657d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
658d4002b98SHong Zhang   PetscFunctionReturn(0);
659d4002b98SHong Zhang }
660d4002b98SHong Zhang 
661d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A)
662d4002b98SHong Zhang {
663d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
664d4002b98SHong Zhang   PetscErrorCode ierr;
665d4002b98SHong Zhang 
666d4002b98SHong Zhang   PetscFunctionBegin;
667d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
668d4002b98SHong Zhang   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz);
669d4002b98SHong Zhang #endif
670d4002b98SHong Zhang   ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr);
671d4002b98SHong Zhang   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
672d4002b98SHong Zhang   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
673d4002b98SHong Zhang   ierr = PetscFree(a->diag);CHKERRQ(ierr);
674d4002b98SHong Zhang   ierr = PetscFree(a->ibdiag);CHKERRQ(ierr);
675d4002b98SHong Zhang   ierr = PetscFree(a->rlen);CHKERRQ(ierr);
676d4002b98SHong Zhang   ierr = PetscFree(a->sliidx);CHKERRQ(ierr);
677d4002b98SHong Zhang   ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr);
678d4002b98SHong Zhang   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
679d4002b98SHong Zhang   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
680d4002b98SHong Zhang   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
681d4002b98SHong Zhang 
682d4002b98SHong Zhang   ierr = PetscFree(A->data);CHKERRQ(ierr);
683d4002b98SHong Zhang 
684d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
685d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
686d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
687d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
688d4002b98SHong Zhang #endif
689d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr);
690d4002b98SHong Zhang   PetscFunctionReturn(0);
691d4002b98SHong Zhang }
692d4002b98SHong Zhang 
693d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)
694d4002b98SHong Zhang {
695d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
696d4002b98SHong Zhang   PetscErrorCode ierr;
697d4002b98SHong Zhang 
698d4002b98SHong Zhang   PetscFunctionBegin;
699d4002b98SHong Zhang   switch (op) {
700d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
701d4002b98SHong Zhang     a->roworiented = flg;
702d4002b98SHong Zhang     break;
703d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
704d4002b98SHong Zhang     a->keepnonzeropattern = flg;
705d4002b98SHong Zhang     break;
706d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
707d4002b98SHong Zhang     a->nonew = (flg ? 0 : 1);
708d4002b98SHong Zhang     break;
709d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
710d4002b98SHong Zhang     a->nonew = (flg ? -1 : 0);
711d4002b98SHong Zhang     break;
712d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
713d4002b98SHong Zhang     a->nonew = (flg ? -2 : 0);
714d4002b98SHong Zhang     break;
715d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
716d4002b98SHong Zhang     a->nounused = (flg ? -1 : 0);
717d4002b98SHong Zhang     break;
718d4002b98SHong Zhang   case MAT_NEW_DIAGONALS:
719d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
720d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
721d4002b98SHong Zhang     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
722d4002b98SHong Zhang     break;
723d4002b98SHong Zhang   case MAT_SPD:
724d4002b98SHong Zhang   case MAT_SYMMETRIC:
725d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
726d4002b98SHong Zhang   case MAT_HERMITIAN:
727d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
728d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
729d4002b98SHong Zhang     break;
730d4002b98SHong Zhang   default:
731d4002b98SHong Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
732d4002b98SHong Zhang   }
733d4002b98SHong Zhang   PetscFunctionReturn(0);
734d4002b98SHong Zhang }
735d4002b98SHong Zhang 
736d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v)
737d4002b98SHong Zhang {
738d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
739d4002b98SHong Zhang   PetscInt       i,j,n,shift;
740d4002b98SHong Zhang   PetscScalar    *x,zero=0.0;
741d4002b98SHong Zhang   PetscErrorCode ierr;
742d4002b98SHong Zhang 
743d4002b98SHong Zhang   PetscFunctionBegin;
744d4002b98SHong Zhang   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
745d4002b98SHong Zhang   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
746d4002b98SHong Zhang 
747d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
748d4002b98SHong Zhang     PetscInt *diag=a->diag;
749d4002b98SHong Zhang     ierr = VecGetArray(v,&x);CHKERRQ(ierr);
750d4002b98SHong Zhang     for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]];
751d4002b98SHong Zhang     ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
752d4002b98SHong Zhang     PetscFunctionReturn(0);
753d4002b98SHong Zhang   }
754d4002b98SHong Zhang 
755d4002b98SHong Zhang   ierr = VecSet(v,zero);CHKERRQ(ierr);
756d4002b98SHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
757d4002b98SHong Zhang   for (i=0; i<n; i++) { /* loop over rows */
758d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
759d4002b98SHong Zhang     x[i] = 0;
760d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
761d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
762d4002b98SHong Zhang         x[i] = a->val[shift+j*8];
763d4002b98SHong Zhang         break;
764d4002b98SHong Zhang       }
765d4002b98SHong Zhang     }
766d4002b98SHong Zhang   }
767d4002b98SHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
768d4002b98SHong Zhang   PetscFunctionReturn(0);
769d4002b98SHong Zhang }
770d4002b98SHong Zhang 
771d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)
772d4002b98SHong Zhang {
773d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
774d4002b98SHong Zhang   const PetscScalar *l,*r;
775d4002b98SHong Zhang   PetscInt          i,j,m,n,row;
776d4002b98SHong Zhang   PetscErrorCode    ierr;
777d4002b98SHong Zhang 
778d4002b98SHong Zhang   PetscFunctionBegin;
779d4002b98SHong Zhang   if (ll) {
780d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
781d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
782d4002b98SHong Zhang     ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr);
783d4002b98SHong Zhang     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length");
784d4002b98SHong Zhang     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
785d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
786d4002b98SHong Zhang       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
787d4002b98SHong Zhang         a->val[j] *= l[8*i+row];
788d4002b98SHong Zhang       }
789d4002b98SHong Zhang     }
790d4002b98SHong Zhang     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
791d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
792d4002b98SHong Zhang   }
793d4002b98SHong Zhang   if (rr) {
794d4002b98SHong Zhang     ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr);
795d4002b98SHong Zhang     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length");
796d4002b98SHong Zhang     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
797d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
798d4002b98SHong Zhang       for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) {
799d4002b98SHong Zhang         a->val[j] *= r[a->colidx[j]];
800d4002b98SHong Zhang       }
801d4002b98SHong Zhang     }
802d4002b98SHong Zhang     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
803d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
804d4002b98SHong Zhang   }
805d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
806d4002b98SHong Zhang   PetscFunctionReturn(0);
807d4002b98SHong Zhang }
808d4002b98SHong Zhang 
809d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
810d4002b98SHong Zhang 
811d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
812d4002b98SHong Zhang {
813d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
814d4002b98SHong Zhang   PetscInt    *cp,i,k,low,high,t,row,col,l;
815d4002b98SHong Zhang   PetscInt    shift;
816d4002b98SHong Zhang   MatScalar   *vp;
817d4002b98SHong Zhang 
818d4002b98SHong Zhang   PetscFunctionBegin;
819d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
820d4002b98SHong Zhang     row = im[k];
821d4002b98SHong Zhang     if (row<0) continue;
822d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
823d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
824d4002b98SHong Zhang #endif
825d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
826d4002b98SHong Zhang     cp = a->colidx+shift; /* pointer to the row */
827d4002b98SHong Zhang     vp = a->val+shift; /* pointer to the row */
828d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added rows */
829d4002b98SHong Zhang       col = in[l];
830d4002b98SHong Zhang       if (col<0) continue;
831d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
832d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1);
833d4002b98SHong Zhang #endif
834d4002b98SHong Zhang       high = a->rlen[row]; low = 0; /* assume unsorted */
835d4002b98SHong Zhang       while (high-low > 5) {
836d4002b98SHong Zhang         t = (low+high)/2;
837d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
838d4002b98SHong Zhang         else low = t;
839d4002b98SHong Zhang       }
840d4002b98SHong Zhang       for (i=low; i<high; i++) {
841d4002b98SHong Zhang         if (*(cp+8*i) > col) break;
842d4002b98SHong Zhang         if (*(cp+8*i) == col) {
843d4002b98SHong Zhang           *v++ = *(vp+8*i);
844d4002b98SHong Zhang           goto finished;
845d4002b98SHong Zhang         }
846d4002b98SHong Zhang       }
847d4002b98SHong Zhang       *v++ = 0.0;
848d4002b98SHong Zhang     finished:;
849d4002b98SHong Zhang     }
850d4002b98SHong Zhang   }
851d4002b98SHong Zhang   PetscFunctionReturn(0);
852d4002b98SHong Zhang }
853d4002b98SHong Zhang 
854d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)
855d4002b98SHong Zhang {
856d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
857d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
858d4002b98SHong Zhang   const char        *name;
859d4002b98SHong Zhang   PetscViewerFormat format;
860d4002b98SHong Zhang   PetscErrorCode    ierr;
861d4002b98SHong Zhang 
862d4002b98SHong Zhang   PetscFunctionBegin;
863d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
864d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
865d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
866d4002b98SHong Zhang     /*
867d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
868d4002b98SHong Zhang       nofinalvalue = 1;
869d4002b98SHong Zhang     }
870d4002b98SHong Zhang     */
871d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
872d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr);
873d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr);
874d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
875d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
876d4002b98SHong Zhang #else
877d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
878d4002b98SHong Zhang #endif
879d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr);
880d4002b98SHong Zhang 
881d4002b98SHong Zhang     for (i=0; i<m; i++) {
882d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
883d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
884d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
885d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
886d4002b98SHong Zhang #else
887d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr);
888d4002b98SHong Zhang #endif
889d4002b98SHong Zhang       }
890d4002b98SHong Zhang     }
891d4002b98SHong Zhang     /*
892d4002b98SHong Zhang     if (nofinalvalue) {
893d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
894d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr);
895d4002b98SHong Zhang #else
896d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr);
897d4002b98SHong Zhang #endif
898d4002b98SHong Zhang     }
899d4002b98SHong Zhang     */
900d4002b98SHong Zhang     ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
901d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr);
902d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
903d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
904d4002b98SHong Zhang     PetscFunctionReturn(0);
905d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
906d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
907d4002b98SHong Zhang     for (i=0; i<m; i++) {
908d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
909d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
910d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
911d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
912d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
913d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
914d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
915d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
916d4002b98SHong Zhang         } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) {
917d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
918d4002b98SHong Zhang         }
919d4002b98SHong Zhang #else
920d4002b98SHong Zhang         if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);}
921d4002b98SHong Zhang #endif
922d4002b98SHong Zhang       }
923d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
924d4002b98SHong Zhang     }
925d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
926d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
927d4002b98SHong Zhang     PetscInt    cnt=0,jcnt;
928d4002b98SHong Zhang     PetscScalar value;
929d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
930d4002b98SHong Zhang     PetscBool   realonly=PETSC_TRUE;
931d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
932d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
933d4002b98SHong Zhang         realonly = PETSC_FALSE;
934d4002b98SHong Zhang         break;
935d4002b98SHong Zhang       }
936d4002b98SHong Zhang     }
937d4002b98SHong Zhang #endif
938d4002b98SHong Zhang 
939d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
940d4002b98SHong Zhang     for (i=0; i<m; i++) {
941d4002b98SHong Zhang       jcnt = 0;
942d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
943d4002b98SHong Zhang       for (j=0; j<A->cmap->n; j++) {
944d4002b98SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) {
945d4002b98SHong Zhang           value = a->val[cnt++];
946d4002b98SHong Zhang           jcnt++;
947d4002b98SHong Zhang         } else {
948d4002b98SHong Zhang           value = 0.0;
949d4002b98SHong Zhang         }
950d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
951d4002b98SHong Zhang         if (realonly) {
952d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr);
953d4002b98SHong Zhang         } else {
954d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr);
955d4002b98SHong Zhang         }
956d4002b98SHong Zhang #else
957d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr);
958d4002b98SHong Zhang #endif
959d4002b98SHong Zhang       }
960d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
961d4002b98SHong Zhang     }
962d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
963d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
964d4002b98SHong Zhang     PetscInt fshift=1;
965d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
966d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
967d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr);
968d4002b98SHong Zhang #else
969d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr);
970d4002b98SHong Zhang #endif
971d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr);
972d4002b98SHong Zhang     for (i=0; i<m; i++) {
973d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
974d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
975d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
976d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
977d4002b98SHong Zhang #else
978d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr);
979d4002b98SHong Zhang #endif
980d4002b98SHong Zhang       }
981d4002b98SHong Zhang     }
982d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
983d4002b98SHong Zhang   } else {
984d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
985d4002b98SHong Zhang     if (A->factortype) {
986d4002b98SHong Zhang       for (i=0; i<m; i++) {
987d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
988d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
989d4002b98SHong Zhang         /* L part */
990d4002b98SHong Zhang         for (j=shift; j<a->diag[i]; j+=8) {
991d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
992d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) {
993d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
994d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) {
995d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
996d4002b98SHong Zhang           } else {
997d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
998d4002b98SHong Zhang           }
999d4002b98SHong Zhang #else
1000d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1001d4002b98SHong Zhang #endif
1002d4002b98SHong Zhang         }
1003d4002b98SHong Zhang         /* diagonal */
1004d4002b98SHong Zhang         j = a->diag[i];
1005d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1006d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
1007d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr);
1008d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1009d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr);
1010d4002b98SHong Zhang         } else {
1011d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr);
1012d4002b98SHong Zhang         }
1013d4002b98SHong Zhang #else
1014d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr);
1015d4002b98SHong Zhang #endif
1016d4002b98SHong Zhang 
1017d4002b98SHong Zhang         /* U part */
1018d4002b98SHong Zhang         for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) {
1019d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1020d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1021d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1022d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1023d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1024d4002b98SHong Zhang           } else {
1025d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1026d4002b98SHong Zhang           }
1027d4002b98SHong Zhang #else
1028d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1029d4002b98SHong Zhang #endif
1030d4002b98SHong Zhang         }
1031d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1032d4002b98SHong Zhang       }
1033d4002b98SHong Zhang     } else {
1034d4002b98SHong Zhang       for (i=0; i<m; i++) {
1035d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1036d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1037d4002b98SHong Zhang         for (j=0; j<a->rlen[i]; j++) {
1038d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1039d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1040d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1041d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1042d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1043d4002b98SHong Zhang           } else {
1044d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1045d4002b98SHong Zhang           }
1046d4002b98SHong Zhang #else
1047d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);
1048d4002b98SHong Zhang #endif
1049d4002b98SHong Zhang         }
1050d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1051d4002b98SHong Zhang       }
1052d4002b98SHong Zhang     }
1053d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1054d4002b98SHong Zhang   }
1055d4002b98SHong Zhang   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
1056d4002b98SHong Zhang   PetscFunctionReturn(0);
1057d4002b98SHong Zhang }
1058d4002b98SHong Zhang 
1059d4002b98SHong Zhang #include <petscdraw.h>
1060d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa)
1061d4002b98SHong Zhang {
1062d4002b98SHong Zhang   Mat               A=(Mat)Aa;
1063d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1064d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1065d4002b98SHong Zhang   int               color;
1066d4002b98SHong Zhang   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1067d4002b98SHong Zhang   PetscViewer       viewer;
1068d4002b98SHong Zhang   PetscViewerFormat format;
1069d4002b98SHong Zhang   PetscErrorCode    ierr;
1070d4002b98SHong Zhang 
1071d4002b98SHong Zhang   PetscFunctionBegin;
1072d4002b98SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1073d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1074d4002b98SHong Zhang   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1075d4002b98SHong Zhang 
1076d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1077d4002b98SHong Zhang 
1078d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1079d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1080d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1081d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1082d4002b98SHong Zhang     for (i=0; i<m; i++) {
1083d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1084d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1085d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1086d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1087d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) >=  0.) continue;
1088d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1089d4002b98SHong Zhang       }
1090d4002b98SHong Zhang     }
1091d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1092d4002b98SHong Zhang     for (i=0; i<m; i++) {
1093d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1094d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1095d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1096d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1097d4002b98SHong Zhang         if (a->val[shift+8*j] !=  0.) continue;
1098d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1099d4002b98SHong Zhang       }
1100d4002b98SHong Zhang     }
1101d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1102d4002b98SHong Zhang     for (i=0; i<m; i++) {
1103d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1104d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1105d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1106d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1107d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) <=  0.) continue;
1108d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1109d4002b98SHong Zhang       }
1110d4002b98SHong Zhang     }
1111d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1112d4002b98SHong Zhang   } else {
1113d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1114d4002b98SHong Zhang     /* first determine max of all nonzero values */
1115d4002b98SHong Zhang     PetscReal minv=0.0,maxv=0.0;
1116d4002b98SHong Zhang     PetscInt  count=0;
1117d4002b98SHong Zhang     PetscDraw popup;
1118d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1119d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1120d4002b98SHong Zhang     }
1121d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1122d4002b98SHong Zhang     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
1123d4002b98SHong Zhang     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1124d4002b98SHong Zhang 
1125d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1126d4002b98SHong Zhang     for (i=0; i<m; i++) {
1127d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1128d4002b98SHong Zhang       y_l = m - i - 1.0;
1129d4002b98SHong Zhang       y_r = y_l + 1.0;
1130d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1131d4002b98SHong Zhang         x_l = a->colidx[shift+j*8];
1132d4002b98SHong Zhang         x_r = x_l + 1.0;
1133d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv);
1134d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1135d4002b98SHong Zhang         count++;
1136d4002b98SHong Zhang       }
1137d4002b98SHong Zhang     }
1138d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1139d4002b98SHong Zhang   }
1140d4002b98SHong Zhang   PetscFunctionReturn(0);
1141d4002b98SHong Zhang }
1142d4002b98SHong Zhang 
1143d4002b98SHong Zhang #include <petscdraw.h>
1144d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)
1145d4002b98SHong Zhang {
1146d4002b98SHong Zhang   PetscDraw      draw;
1147d4002b98SHong Zhang   PetscReal      xr,yr,xl,yl,h,w;
1148d4002b98SHong Zhang   PetscBool      isnull;
1149d4002b98SHong Zhang   PetscErrorCode ierr;
1150d4002b98SHong Zhang 
1151d4002b98SHong Zhang   PetscFunctionBegin;
1152d4002b98SHong Zhang   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1153d4002b98SHong Zhang   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1154d4002b98SHong Zhang   if (isnull) PetscFunctionReturn(0);
1155d4002b98SHong Zhang 
1156d4002b98SHong Zhang   xr   = A->cmap->n; yr  = A->rmap->n; h = yr/10.0; w = xr/10.0;
1157d4002b98SHong Zhang   xr  += w;          yr += h;         xl = -w;     yl = -h;
1158d4002b98SHong Zhang   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1159d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1160d4002b98SHong Zhang   ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr);
1161d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1162d4002b98SHong Zhang   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1163d4002b98SHong Zhang   PetscFunctionReturn(0);
1164d4002b98SHong Zhang }
1165d4002b98SHong Zhang 
1166d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer)
1167d4002b98SHong Zhang {
1168d4002b98SHong Zhang   PetscBool      iascii,isbinary,isdraw;
1169d4002b98SHong Zhang   PetscErrorCode ierr;
1170d4002b98SHong Zhang 
1171d4002b98SHong Zhang   PetscFunctionBegin;
1172d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1173d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1174d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1175d4002b98SHong Zhang   if (iascii) {
1176d4002b98SHong Zhang     ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr);
1177d4002b98SHong Zhang   } else if (isbinary) {
1178d4002b98SHong Zhang     /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */
1179d4002b98SHong Zhang   } else if (isdraw) {
1180d4002b98SHong Zhang     ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr);
1181d4002b98SHong Zhang   }
1182d4002b98SHong Zhang   PetscFunctionReturn(0);
1183d4002b98SHong Zhang }
1184d4002b98SHong Zhang 
1185d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)
1186d4002b98SHong Zhang {
1187d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1188d4002b98SHong Zhang   PetscInt       i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k;
1189d4002b98SHong Zhang   MatScalar      *vp;
1190d4002b98SHong Zhang   PetscErrorCode ierr;
1191d4002b98SHong Zhang 
1192d4002b98SHong Zhang   PetscFunctionBegin;
1193d4002b98SHong Zhang   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1194d4002b98SHong Zhang   /* To do: compress out the unused elements */
1195d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
1196d4002b98SHong Zhang   ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr);
1197d4002b98SHong Zhang   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr);
1198d4002b98SHong Zhang   ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr);
1199d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1200d4002b98SHong Zhang   for (i=0; i<a->totalslices; ++i) {
1201d4002b98SHong Zhang     shift = a->sliidx[i];    /* starting index of the slice */
1202d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the column indices of the slice */
1203d4002b98SHong Zhang     vp    = a->val+shift;    /* pointer to the nonzero values of the slice */
1204d4002b98SHong Zhang     for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */
1205d4002b98SHong Zhang       row  = 8*i + row_in_slice;
1206d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1207d4002b98SHong Zhang       /*
1208d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1209d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1210d4002b98SHong Zhang       */
1211d4002b98SHong Zhang       lastcol = 0;
1212d4002b98SHong Zhang       if (nrow>0) { /* nonempty row */
1213d4002b98SHong Zhang         lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */
1214d4002b98SHong Zhang       } else if (!row_in_slice) { /* first row of the currect slice is empty */
1215d4002b98SHong Zhang         for (j=1;j<8;j++) {
1216d4002b98SHong Zhang           if (a->rlen[8*i+j]) {
1217d4002b98SHong Zhang             lastcol = cp[j];
1218d4002b98SHong Zhang             break;
1219d4002b98SHong Zhang           }
1220d4002b98SHong Zhang         }
1221d4002b98SHong Zhang       } else {
1222d4002b98SHong Zhang         if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */
1223d4002b98SHong Zhang       }
1224d4002b98SHong Zhang 
1225d4002b98SHong Zhang       for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) {
1226d4002b98SHong Zhang         cp[8*k+row_in_slice] = lastcol;
1227d4002b98SHong Zhang         vp[8*k+row_in_slice] = (MatScalar)0;
1228d4002b98SHong Zhang       }
1229d4002b98SHong Zhang     }
1230d4002b98SHong Zhang   }
1231d4002b98SHong Zhang 
1232d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1233d4002b98SHong Zhang   a->reallocs      = 0;
1234d4002b98SHong Zhang 
1235d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1236d4002b98SHong Zhang   PetscFunctionReturn(0);
1237d4002b98SHong Zhang }
1238d4002b98SHong Zhang 
1239d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info)
1240d4002b98SHong Zhang {
1241d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1242d4002b98SHong Zhang 
1243d4002b98SHong Zhang   PetscFunctionBegin;
1244d4002b98SHong Zhang   info->block_size   = 1.0;
1245d4002b98SHong Zhang   info->nz_allocated = (double)a->maxallocmat;
1246d4002b98SHong Zhang   info->nz_used      = (double)a->sliidx[a->totalslices]; /* include padding zeros */
1247d4002b98SHong Zhang   info->nz_unneeded  = (double)(a->maxallocmat-a->sliidx[a->totalslices]);
1248d4002b98SHong Zhang   info->assemblies   = (double)A->num_ass;
1249d4002b98SHong Zhang   info->mallocs      = (double)A->info.mallocs;
1250d4002b98SHong Zhang   info->memory       = ((PetscObject)A)->mem;
1251d4002b98SHong Zhang   if (A->factortype) {
1252d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1253d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1254d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1255d4002b98SHong Zhang   } else {
1256d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1257d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1258d4002b98SHong Zhang     info->factor_mallocs    = 0;
1259d4002b98SHong Zhang   }
1260d4002b98SHong Zhang   PetscFunctionReturn(0);
1261d4002b98SHong Zhang }
1262d4002b98SHong Zhang 
1263d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
1264d4002b98SHong Zhang {
1265d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1266d4002b98SHong Zhang   PetscInt       shift,i,k,l,low,high,t,ii,row,col,nrow;
1267d4002b98SHong Zhang   PetscInt       *cp,nonew=a->nonew,lastcol=-1;
1268d4002b98SHong Zhang   MatScalar      *vp,value;
1269d4002b98SHong Zhang   PetscErrorCode ierr;
1270d4002b98SHong Zhang 
1271d4002b98SHong Zhang   PetscFunctionBegin;
1272d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
1273d4002b98SHong Zhang     row = im[k];
1274d4002b98SHong Zhang     if (row < 0) continue;
1275d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1276d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1277d4002b98SHong Zhang #endif
1278d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1279d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the row */
1280d4002b98SHong Zhang     vp    = a->val+shift; /* pointer to the row */
1281d4002b98SHong Zhang     nrow  = a->rlen[row];
1282d4002b98SHong Zhang     low   = 0;
1283d4002b98SHong Zhang     high  = nrow;
1284d4002b98SHong Zhang 
1285d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
1286d4002b98SHong Zhang       col = in[l];
1287d4002b98SHong Zhang       if (col<0) continue;
1288d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1289d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1);
1290d4002b98SHong Zhang #endif
1291d4002b98SHong Zhang       if (a->roworiented) {
1292d4002b98SHong Zhang         value = v[l+k*n];
1293d4002b98SHong Zhang       } else {
1294d4002b98SHong Zhang         value = v[k+l*m];
1295d4002b98SHong Zhang       }
1296d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1297d4002b98SHong Zhang 
1298d4002b98SHong Zhang       /* search in this row for the specified colmun, i indicates the column to be set */
1299d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1300d4002b98SHong Zhang       else high = nrow;
1301d4002b98SHong Zhang       lastcol = col;
1302d4002b98SHong Zhang       while (high-low > 5) {
1303d4002b98SHong Zhang         t = (low+high)/2;
1304d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1305d4002b98SHong Zhang         else low = t;
1306d4002b98SHong Zhang       }
1307d4002b98SHong Zhang       for (i=low; i<high; i++) {
1308d4002b98SHong Zhang         if (*(cp+i*8) > col) break;
1309d4002b98SHong Zhang         if (*(cp+i*8) == col) {
1310d4002b98SHong Zhang           if (is == ADD_VALUES) *(vp+i*8) += value;
1311d4002b98SHong Zhang           else *(vp+i*8) = value;
1312d4002b98SHong Zhang           low = i + 1;
1313d4002b98SHong Zhang           goto noinsert;
1314d4002b98SHong Zhang         }
1315d4002b98SHong Zhang       }
1316d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1317d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
1318d4002b98SHong Zhang       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1319d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
1320d4002b98SHong Zhang       MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar);
1321d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1322d4002b98SHong Zhang       for (ii=nrow-1; ii>=i; ii--) {
1323d4002b98SHong Zhang         *(cp+(ii+1)*8) = *(cp+ii*8);
1324d4002b98SHong Zhang         *(vp+(ii+1)*8) = *(vp+ii*8);
1325d4002b98SHong Zhang       }
1326d4002b98SHong Zhang       a->rlen[row]++;
1327d4002b98SHong Zhang       *(cp+i*8) = col;
1328d4002b98SHong Zhang       *(vp+i*8) = value;
1329d4002b98SHong Zhang       a->nz++;
1330d4002b98SHong Zhang       A->nonzerostate++;
1331d4002b98SHong Zhang       low = i+1; high++; nrow++;
1332d4002b98SHong Zhang noinsert:;
1333d4002b98SHong Zhang     }
1334d4002b98SHong Zhang     a->rlen[row] = nrow;
1335d4002b98SHong Zhang   }
1336d4002b98SHong Zhang   PetscFunctionReturn(0);
1337d4002b98SHong Zhang }
1338d4002b98SHong Zhang 
1339d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)
1340d4002b98SHong Zhang {
1341d4002b98SHong Zhang   PetscErrorCode ierr;
1342d4002b98SHong Zhang 
1343d4002b98SHong Zhang   PetscFunctionBegin;
1344d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1345d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1346d4002b98SHong Zhang     Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1347d4002b98SHong Zhang     Mat_SeqSELL *b=(Mat_SeqSELL*)B->data;
1348d4002b98SHong Zhang 
1349d4002b98SHong Zhang     if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
1350d4002b98SHong Zhang     ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1351d4002b98SHong Zhang   } else {
1352d4002b98SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1353d4002b98SHong Zhang   }
1354d4002b98SHong Zhang   PetscFunctionReturn(0);
1355d4002b98SHong Zhang }
1356d4002b98SHong Zhang 
1357d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A)
1358d4002b98SHong Zhang {
1359d4002b98SHong Zhang   PetscErrorCode ierr;
1360d4002b98SHong Zhang 
1361d4002b98SHong Zhang   PetscFunctionBegin;
1362d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr);
1363d4002b98SHong Zhang   PetscFunctionReturn(0);
1364d4002b98SHong Zhang }
1365d4002b98SHong Zhang 
1366d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[])
1367d4002b98SHong Zhang {
1368d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1369d4002b98SHong Zhang 
1370d4002b98SHong Zhang   PetscFunctionBegin;
1371d4002b98SHong Zhang   *array = a->val;
1372d4002b98SHong Zhang   PetscFunctionReturn(0);
1373d4002b98SHong Zhang }
1374d4002b98SHong Zhang 
1375d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[])
1376d4002b98SHong Zhang {
1377d4002b98SHong Zhang   PetscFunctionBegin;
1378d4002b98SHong Zhang   PetscFunctionReturn(0);
1379d4002b98SHong Zhang }
1380d4002b98SHong Zhang 
1381d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A)
1382d4002b98SHong Zhang {
1383d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1384d4002b98SHong Zhang   PetscInt    i;
1385d4002b98SHong Zhang   MatScalar   *aval=a->val;
1386d4002b98SHong Zhang 
1387d4002b98SHong Zhang   PetscFunctionBegin;
1388d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]);
1389d4002b98SHong Zhang   PetscFunctionReturn(0);
1390d4002b98SHong Zhang }
1391d4002b98SHong Zhang 
1392d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1393d4002b98SHong Zhang {
1394d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1395d4002b98SHong Zhang   PetscInt       i;
1396d4002b98SHong Zhang   MatScalar      *aval=a->val;
1397d4002b98SHong Zhang   PetscErrorCode ierr;
1398d4002b98SHong Zhang 
1399d4002b98SHong Zhang   PetscFunctionBegin;
1400d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
1401d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1402d4002b98SHong Zhang   PetscFunctionReturn(0);
1403d4002b98SHong Zhang }
1404d4002b98SHong Zhang 
1405d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha)
1406d4002b98SHong Zhang {
1407d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)inA->data;
1408d4002b98SHong Zhang   MatScalar      *aval=a->val;
1409d4002b98SHong Zhang   PetscScalar    oalpha=alpha;
1410d4002b98SHong Zhang   PetscBLASInt   one=1,size;
1411d4002b98SHong Zhang   PetscErrorCode ierr;
1412d4002b98SHong Zhang 
1413d4002b98SHong Zhang   PetscFunctionBegin;
1414d4002b98SHong Zhang   ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr);
1415d4002b98SHong Zhang   PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one));
1416d4002b98SHong Zhang   ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1417d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr);
1418d4002b98SHong Zhang   PetscFunctionReturn(0);
1419d4002b98SHong Zhang }
1420d4002b98SHong Zhang 
1421d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a)
1422d4002b98SHong Zhang {
1423d4002b98SHong Zhang   Mat_SeqSELL    *y=(Mat_SeqSELL*)Y->data;
1424d4002b98SHong Zhang   PetscErrorCode ierr;
1425d4002b98SHong Zhang 
1426d4002b98SHong Zhang   PetscFunctionBegin;
1427d4002b98SHong Zhang   if (!Y->preallocated || !y->nz) {
1428d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr);
1429d4002b98SHong Zhang   }
1430d4002b98SHong Zhang   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
1431d4002b98SHong Zhang   PetscFunctionReturn(0);
1432d4002b98SHong Zhang }
1433d4002b98SHong Zhang 
1434d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1435d4002b98SHong Zhang {
1436d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1437d4002b98SHong Zhang   PetscScalar       *x,sum,*t;
1438d4002b98SHong Zhang   const MatScalar   *idiag=0,*mdiag;
1439d4002b98SHong Zhang   const PetscScalar *b,*xb;
1440d4002b98SHong Zhang   PetscInt          n,m=A->rmap->n,i,j,shift;
1441d4002b98SHong Zhang   const PetscInt    *diag;
1442d4002b98SHong Zhang   PetscErrorCode    ierr;
1443d4002b98SHong Zhang 
1444d4002b98SHong Zhang   PetscFunctionBegin;
1445d4002b98SHong Zhang   its = its*lits;
1446d4002b98SHong Zhang 
1447d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
1448d4002b98SHong Zhang   if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);}
1449d4002b98SHong Zhang   a->fshift = fshift;
1450d4002b98SHong Zhang   a->omega  = omega;
1451d4002b98SHong Zhang 
1452d4002b98SHong Zhang   diag  = a->diag;
1453d4002b98SHong Zhang   t     = a->ssor_work;
1454d4002b98SHong Zhang   idiag = a->idiag;
1455d4002b98SHong Zhang   mdiag = a->mdiag;
1456d4002b98SHong Zhang 
1457d4002b98SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1458d4002b98SHong Zhang   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1459d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
1460d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented");
1461d4002b98SHong Zhang   if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented");
1462d4002b98SHong Zhang   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
1463d4002b98SHong Zhang 
1464d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1465d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1466d4002b98SHong Zhang       for (i=0; i<m; i++) {
1467d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1468d4002b98SHong Zhang         sum   = b[i];
1469d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1470d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1471d4002b98SHong Zhang         t[i]  = sum;
1472d4002b98SHong Zhang         x[i]  = sum*idiag[i];
1473d4002b98SHong Zhang       }
1474d4002b98SHong Zhang       xb   = t;
1475d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1476d4002b98SHong Zhang     } else xb = b;
1477d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1478d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1479d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1480d4002b98SHong Zhang         sum   = xb[i];
1481d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1482d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1483d4002b98SHong Zhang         if (xb == b) {
1484d4002b98SHong Zhang           x[i] = sum*idiag[i];
1485d4002b98SHong Zhang         } else {
1486d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1487d4002b98SHong Zhang         }
1488d4002b98SHong Zhang       }
1489d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1490d4002b98SHong Zhang     }
1491d4002b98SHong Zhang     its--;
1492d4002b98SHong Zhang   }
1493d4002b98SHong Zhang   while (its--) {
1494d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1495d4002b98SHong Zhang       for (i=0; i<m; i++) {
1496d4002b98SHong Zhang         /* lower */
1497d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1498d4002b98SHong Zhang         sum   = b[i];
1499d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1500d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1501d4002b98SHong Zhang         t[i]  = sum;             /* save application of the lower-triangular part */
1502d4002b98SHong Zhang         /* upper */
1503d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1504d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1505d4002b98SHong Zhang         x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1506d4002b98SHong Zhang       }
1507d4002b98SHong Zhang       xb   = t;
1508d4002b98SHong Zhang       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1509d4002b98SHong Zhang     } else xb = b;
1510d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1511d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1512d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1513d4002b98SHong Zhang         sum = xb[i];
1514d4002b98SHong Zhang         if (xb == b) {
1515d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1516d4002b98SHong Zhang           n     = a->rlen[i];
1517d4002b98SHong Zhang           for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1518d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i];
1519d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
1520d4002b98SHong Zhang           n     = a->rlen[i]-(diag[i]-shift)/8-1;
1521d4002b98SHong Zhang           for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1522d4002b98SHong Zhang           x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1523d4002b98SHong Zhang         }
1524d4002b98SHong Zhang       }
1525d4002b98SHong Zhang       if (xb == b) {
1526d4002b98SHong Zhang         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1527d4002b98SHong Zhang       } else {
1528d4002b98SHong Zhang         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1529d4002b98SHong Zhang       }
1530d4002b98SHong Zhang     }
1531d4002b98SHong Zhang   }
1532d4002b98SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1533d4002b98SHong Zhang   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1534d4002b98SHong Zhang   PetscFunctionReturn(0);
1535d4002b98SHong Zhang }
1536d4002b98SHong Zhang 
1537d4002b98SHong Zhang /* -------------------------------------------------------------------*/
1538d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
1539d4002b98SHong Zhang                                        0,
1540d4002b98SHong Zhang                                        0,
1541d4002b98SHong Zhang                                        MatMult_SeqSELL,
1542d4002b98SHong Zhang                                /* 4*/  MatMultAdd_SeqSELL,
1543d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1544d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1545d4002b98SHong Zhang                                        0,
1546d4002b98SHong Zhang                                        0,
1547d4002b98SHong Zhang                                        0,
1548d4002b98SHong Zhang                                /* 10*/ 0,
1549d4002b98SHong Zhang                                        0,
1550d4002b98SHong Zhang                                        0,
1551d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1552d4002b98SHong Zhang                                        0,
1553d4002b98SHong Zhang                                /* 15*/ MatGetInfo_SeqSELL,
1554d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1555d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1556d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1557d4002b98SHong Zhang                                        0,
1558d4002b98SHong Zhang                                /* 20*/ 0,
1559d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1560d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1561d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1562d4002b98SHong Zhang                                /* 24*/ 0,
1563d4002b98SHong Zhang                                        0,
1564d4002b98SHong Zhang                                        0,
1565d4002b98SHong Zhang                                        0,
1566d4002b98SHong Zhang                                        0,
1567d4002b98SHong Zhang                                /* 29*/ MatSetUp_SeqSELL,
1568d4002b98SHong Zhang                                        0,
1569d4002b98SHong Zhang                                        0,
1570d4002b98SHong Zhang                                        0,
1571d4002b98SHong Zhang                                        0,
1572d4002b98SHong Zhang                                /* 34*/ MatDuplicate_SeqSELL,
1573d4002b98SHong Zhang                                        0,
1574d4002b98SHong Zhang                                        0,
1575d4002b98SHong Zhang                                        0,
1576d4002b98SHong Zhang                                        0,
1577d4002b98SHong Zhang                                /* 39*/ 0,
1578d4002b98SHong Zhang                                        0,
1579d4002b98SHong Zhang                                        0,
1580d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1581d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1582d4002b98SHong Zhang                                /* 44*/ 0,
1583d4002b98SHong Zhang                                        MatScale_SeqSELL,
1584d4002b98SHong Zhang                                        MatShift_SeqSELL,
1585d4002b98SHong Zhang                                        0,
1586d4002b98SHong Zhang                                        0,
1587d4002b98SHong Zhang                                /* 49*/ 0,
1588d4002b98SHong Zhang                                        0,
1589d4002b98SHong Zhang                                        0,
1590d4002b98SHong Zhang                                        0,
1591d4002b98SHong Zhang                                        0,
1592d4002b98SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
1593d4002b98SHong Zhang                                        0,
1594d4002b98SHong Zhang                                        0,
1595d4002b98SHong Zhang                                        0,
1596d4002b98SHong Zhang                                        0,
1597d4002b98SHong Zhang                                /* 59*/ 0,
1598d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1599d4002b98SHong Zhang                                        MatView_SeqSELL,
1600d4002b98SHong Zhang                                        0,
1601d4002b98SHong Zhang                                        0,
1602d4002b98SHong Zhang                                /* 64*/ 0,
1603d4002b98SHong Zhang                                        0,
1604d4002b98SHong Zhang                                        0,
1605d4002b98SHong Zhang                                        0,
1606d4002b98SHong Zhang                                        0,
1607d4002b98SHong Zhang                                /* 69*/ 0,
1608d4002b98SHong Zhang                                        0,
1609d4002b98SHong Zhang                                        0,
1610d4002b98SHong Zhang                                        0,
1611d4002b98SHong Zhang                                        0,
1612d4002b98SHong Zhang                                /* 74*/ 0,
1613d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1614d4002b98SHong Zhang                                        0,
1615d4002b98SHong Zhang                                        0,
1616d4002b98SHong Zhang                                        0,
1617d4002b98SHong Zhang                                /* 79*/ 0,
1618d4002b98SHong Zhang                                        0,
1619d4002b98SHong Zhang                                        0,
1620d4002b98SHong Zhang                                        0,
1621d4002b98SHong Zhang                                        0,
1622d4002b98SHong Zhang                                /* 84*/ 0,
1623d4002b98SHong Zhang                                        0,
1624d4002b98SHong Zhang                                        0,
1625d4002b98SHong Zhang                                        0,
1626d4002b98SHong Zhang                                        0,
1627d4002b98SHong Zhang                                /* 89*/ 0,
1628d4002b98SHong Zhang                                        0,
1629d4002b98SHong Zhang                                        0,
1630d4002b98SHong Zhang                                        0,
1631d4002b98SHong Zhang                                        0,
1632d4002b98SHong Zhang                                /* 94*/ 0,
1633d4002b98SHong Zhang                                        0,
1634d4002b98SHong Zhang                                        0,
1635d4002b98SHong Zhang                                        0,
1636d4002b98SHong Zhang                                        0,
1637d4002b98SHong Zhang                                /* 99*/ 0,
1638d4002b98SHong Zhang                                        0,
1639d4002b98SHong Zhang                                        0,
1640d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1641d4002b98SHong Zhang                                        0,
1642d4002b98SHong Zhang                                /*104*/ 0,
1643d4002b98SHong Zhang                                        0,
1644d4002b98SHong Zhang                                        0,
1645d4002b98SHong Zhang                                        0,
1646d4002b98SHong Zhang                                        0,
1647d4002b98SHong Zhang                                /*109*/ 0,
1648d4002b98SHong Zhang                                        0,
1649d4002b98SHong Zhang                                        0,
1650d4002b98SHong Zhang                                        0,
1651d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1652d4002b98SHong Zhang                                /*114*/ 0,
1653d4002b98SHong Zhang                                        0,
1654d4002b98SHong Zhang                                        0,
1655d4002b98SHong Zhang                                        0,
1656d4002b98SHong Zhang                                        0,
1657d4002b98SHong Zhang                                /*119*/ 0,
1658d4002b98SHong Zhang                                        0,
1659d4002b98SHong Zhang                                        0,
1660d4002b98SHong Zhang                                        0,
1661d4002b98SHong Zhang                                        0,
1662d4002b98SHong Zhang                                /*124*/ 0,
1663d4002b98SHong Zhang                                        0,
1664d4002b98SHong Zhang                                        0,
1665d4002b98SHong Zhang                                        0,
1666d4002b98SHong Zhang                                        0,
1667d4002b98SHong Zhang                                /*129*/ 0,
1668d4002b98SHong Zhang                                        0,
1669d4002b98SHong Zhang                                        0,
1670d4002b98SHong Zhang                                        0,
1671d4002b98SHong Zhang                                        0,
1672d4002b98SHong Zhang                                /*134*/ 0,
1673d4002b98SHong Zhang                                        0,
1674d4002b98SHong Zhang                                        0,
1675d4002b98SHong Zhang                                        0,
1676d4002b98SHong Zhang                                        0,
1677d4002b98SHong Zhang                                /*139*/ 0,
1678d4002b98SHong Zhang                                        0,
1679d4002b98SHong Zhang                                        0,
1680d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1681d4002b98SHong Zhang                                        0,
1682d4002b98SHong Zhang                                 /*144*/0
1683d4002b98SHong Zhang };
1684d4002b98SHong Zhang 
1685d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1686d4002b98SHong Zhang {
1687d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1688d4002b98SHong Zhang   PetscErrorCode ierr;
1689d4002b98SHong Zhang 
1690d4002b98SHong Zhang   PetscFunctionBegin;
1691d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1692d4002b98SHong Zhang 
1693d4002b98SHong Zhang   /* allocate space for values if not already there */
1694d4002b98SHong Zhang   if (!a->saved_values) {
1695d4002b98SHong Zhang     ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr);
1696d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr);
1697d4002b98SHong Zhang   }
1698d4002b98SHong Zhang 
1699d4002b98SHong Zhang   /* copy values over */
1700d4002b98SHong Zhang   ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1701d4002b98SHong Zhang   PetscFunctionReturn(0);
1702d4002b98SHong Zhang }
1703d4002b98SHong Zhang 
1704d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1705d4002b98SHong Zhang {
1706d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1707d4002b98SHong Zhang   PetscErrorCode ierr;
1708d4002b98SHong Zhang 
1709d4002b98SHong Zhang   PetscFunctionBegin;
1710d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1711d4002b98SHong Zhang   if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
1712d4002b98SHong Zhang   /* copy values over */
1713d4002b98SHong Zhang   ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1714d4002b98SHong Zhang   PetscFunctionReturn(0);
1715d4002b98SHong Zhang }
1716d4002b98SHong Zhang 
1717d4002b98SHong Zhang /*@C
1718d4002b98SHong Zhang  MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray()
1719d4002b98SHong Zhang 
1720d4002b98SHong Zhang  Not Collective
1721d4002b98SHong Zhang 
1722d4002b98SHong Zhang  Input Parameters:
1723d4002b98SHong Zhang  .  mat - a MATSEQSELL matrix
1724d4002b98SHong Zhang  .  array - pointer to the data
1725d4002b98SHong Zhang 
1726d4002b98SHong Zhang  Level: intermediate
1727d4002b98SHong Zhang 
1728d4002b98SHong Zhang  .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90()
1729d4002b98SHong Zhang  @*/
1730d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array)
1731d4002b98SHong Zhang {
1732d4002b98SHong Zhang   PetscErrorCode ierr;
1733d4002b98SHong Zhang 
1734d4002b98SHong Zhang   PetscFunctionBegin;
1735d4002b98SHong Zhang   ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
1736d4002b98SHong Zhang   PetscFunctionReturn(0);
1737d4002b98SHong Zhang }
1738d4002b98SHong Zhang 
1739d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
1740d4002b98SHong Zhang {
1741d4002b98SHong Zhang   Mat_SeqSELL    *b;
1742d4002b98SHong Zhang   PetscMPIInt    size;
1743d4002b98SHong Zhang   PetscErrorCode ierr;
1744d4002b98SHong Zhang 
1745d4002b98SHong Zhang   PetscFunctionBegin;
1746d4002b98SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1747d4002b98SHong Zhang   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1");
1748d4002b98SHong Zhang 
1749d4002b98SHong Zhang   ierr = PetscNewLog(B,&b);CHKERRQ(ierr);
1750d4002b98SHong Zhang 
1751d4002b98SHong Zhang   B->data = (void*)b;
1752d4002b98SHong Zhang 
1753d4002b98SHong Zhang   ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1754d4002b98SHong Zhang 
1755d4002b98SHong Zhang   b->row                = 0;
1756d4002b98SHong Zhang   b->col                = 0;
1757d4002b98SHong Zhang   b->icol               = 0;
1758d4002b98SHong Zhang   b->reallocs           = 0;
1759d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
1760d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
1761d4002b98SHong Zhang   b->nonew              = 0;
1762d4002b98SHong Zhang   b->diag               = 0;
1763d4002b98SHong Zhang   b->solve_work         = 0;
1764d4002b98SHong Zhang   B->spptr              = 0;
1765d4002b98SHong Zhang   b->saved_values       = 0;
1766d4002b98SHong Zhang   b->idiag              = 0;
1767d4002b98SHong Zhang   b->mdiag              = 0;
1768d4002b98SHong Zhang   b->ssor_work          = 0;
1769d4002b98SHong Zhang   b->omega              = 1.0;
1770d4002b98SHong Zhang   b->fshift             = 0.0;
1771d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
1772d4002b98SHong Zhang   b->ibdiagvalid        = PETSC_FALSE;
1773d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
1774d4002b98SHong Zhang 
1775d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr);
1776d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr);
1777d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr);
1778d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr);
1779d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr);
1780d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr);
1781d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr);
1782d4002b98SHong Zhang   PetscFunctionReturn(0);
1783d4002b98SHong Zhang }
1784d4002b98SHong Zhang 
1785d4002b98SHong Zhang /*
1786d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
1787d4002b98SHong Zhang  */
1788d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
1789d4002b98SHong Zhang {
1790d4002b98SHong Zhang   Mat_SeqSELL    *c,*a=(Mat_SeqSELL*)A->data;
1791d4002b98SHong Zhang   PetscInt       i,m=A->rmap->n;
1792d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
1793d4002b98SHong Zhang   PetscErrorCode ierr;
1794d4002b98SHong Zhang 
1795d4002b98SHong Zhang   PetscFunctionBegin;
1796d4002b98SHong Zhang   c = (Mat_SeqSELL*)C->data;
1797d4002b98SHong Zhang 
1798d4002b98SHong Zhang   C->factortype = A->factortype;
1799d4002b98SHong Zhang   c->row        = 0;
1800d4002b98SHong Zhang   c->col        = 0;
1801d4002b98SHong Zhang   c->icol       = 0;
1802d4002b98SHong Zhang   c->reallocs   = 0;
1803d4002b98SHong Zhang 
1804d4002b98SHong Zhang   C->assembled = PETSC_TRUE;
1805d4002b98SHong Zhang 
1806d4002b98SHong Zhang   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
1807d4002b98SHong Zhang   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
1808d4002b98SHong Zhang 
1809d4002b98SHong Zhang   ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr);
1810d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
1811d4002b98SHong Zhang   ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr);
1812d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
1813d4002b98SHong Zhang 
1814d4002b98SHong Zhang   for (i=0; i<m; i++) c->rlen[i] = a->rlen[i];
1815d4002b98SHong Zhang   for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i];
1816d4002b98SHong Zhang 
1817d4002b98SHong Zhang   /* allocate the matrix space */
1818d4002b98SHong Zhang   if (mallocmatspace) {
1819d4002b98SHong Zhang     ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr);
1820d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
1821d4002b98SHong Zhang 
1822d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
1823d4002b98SHong Zhang 
1824d4002b98SHong Zhang     if (m > 0) {
1825d4002b98SHong Zhang       ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr);
1826d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
1827d4002b98SHong Zhang         ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
1828d4002b98SHong Zhang       } else {
1829d4002b98SHong Zhang         ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
1830d4002b98SHong Zhang       }
1831d4002b98SHong Zhang     }
1832d4002b98SHong Zhang   }
1833d4002b98SHong Zhang 
1834d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
1835d4002b98SHong Zhang   c->roworiented       = a->roworiented;
1836d4002b98SHong Zhang   c->nonew             = a->nonew;
1837d4002b98SHong Zhang   if (a->diag) {
1838d4002b98SHong Zhang     ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr);
1839d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
1840d4002b98SHong Zhang     for (i=0; i<m; i++) {
1841d4002b98SHong Zhang       c->diag[i] = a->diag[i];
1842d4002b98SHong Zhang     }
1843d4002b98SHong Zhang   } else c->diag = 0;
1844d4002b98SHong Zhang 
1845d4002b98SHong Zhang   c->solve_work         = 0;
1846d4002b98SHong Zhang   c->saved_values       = 0;
1847d4002b98SHong Zhang   c->idiag              = 0;
1848d4002b98SHong Zhang   c->ssor_work          = 0;
1849d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
1850d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
1851d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
1852d4002b98SHong Zhang 
1853d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
1854d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
1855d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
1856d4002b98SHong Zhang   c->nz           = a->nz;
1857d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
1858d4002b98SHong Zhang 
1859d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
1860d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
1861d4002b98SHong Zhang 
1862d4002b98SHong Zhang   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
1863d4002b98SHong Zhang   PetscFunctionReturn(0);
1864d4002b98SHong Zhang }
1865d4002b98SHong Zhang 
1866d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B)
1867d4002b98SHong Zhang {
1868d4002b98SHong Zhang   PetscErrorCode ierr;
1869d4002b98SHong Zhang 
1870d4002b98SHong Zhang   PetscFunctionBegin;
1871d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
1872d4002b98SHong Zhang   ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1873d4002b98SHong Zhang   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) {
1874d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr);
1875d4002b98SHong Zhang   }
1876d4002b98SHong Zhang   ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1877d4002b98SHong Zhang   ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
1878d4002b98SHong Zhang   PetscFunctionReturn(0);
1879d4002b98SHong Zhang }
1880d4002b98SHong Zhang 
1881d4002b98SHong Zhang /*@C
1882d4002b98SHong Zhang  MatCreateSeqSELL - Creates a sparse matrix in SELL format.
1883d4002b98SHong Zhang 
1884d4002b98SHong Zhang  Collective on MPI_Comm
1885d4002b98SHong Zhang 
1886d4002b98SHong Zhang  Input Parameters:
1887d4002b98SHong Zhang  +  comm - MPI communicator, set to PETSC_COMM_SELF
1888d4002b98SHong Zhang  .  m - number of rows
1889d4002b98SHong Zhang  .  n - number of columns
1890d4002b98SHong Zhang  .  rlenmax - maximum number of nonzeros in a row
1891d4002b98SHong Zhang  -  rlen - array containing the number of nonzeros in the various rows
1892d4002b98SHong Zhang  (possibly different for each row) or NULL
1893d4002b98SHong Zhang 
1894d4002b98SHong Zhang  Output Parameter:
1895d4002b98SHong Zhang  .  A - the matrix
1896d4002b98SHong Zhang 
1897d4002b98SHong Zhang  It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1898d4002b98SHong Zhang  MatXXXXSetPreallocation() paradgm instead of this routine directly.
1899d4002b98SHong Zhang  [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
1900d4002b98SHong Zhang 
1901d4002b98SHong Zhang  Notes:
1902d4002b98SHong Zhang  If nnz is given then nz is ignored
1903d4002b98SHong Zhang 
1904d4002b98SHong Zhang  Specify the preallocated storage with either rlenmax or rlen (not both).
1905d4002b98SHong Zhang  Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory
1906d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
1907d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
1908d4002b98SHong Zhang 
1909d4002b98SHong Zhang  Level: intermediate
1910d4002b98SHong Zhang 
1911d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays()
1912d4002b98SHong Zhang 
1913d4002b98SHong Zhang  @*/
1914d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A)
1915d4002b98SHong Zhang {
1916d4002b98SHong Zhang   PetscErrorCode ierr;
1917d4002b98SHong Zhang 
1918d4002b98SHong Zhang   PetscFunctionBegin;
1919d4002b98SHong Zhang   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1920d4002b98SHong Zhang   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
1921d4002b98SHong Zhang   ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr);
1922d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr);
1923d4002b98SHong Zhang   PetscFunctionReturn(0);
1924d4002b98SHong Zhang }
1925d4002b98SHong Zhang 
1926d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)
1927d4002b98SHong Zhang {
1928d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data;
1929d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
1930d4002b98SHong Zhang   PetscErrorCode ierr;
1931d4002b98SHong Zhang 
1932d4002b98SHong Zhang   PetscFunctionBegin;
1933d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
1934d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
1935d4002b98SHong Zhang     *flg = PETSC_FALSE;
1936d4002b98SHong Zhang     PetscFunctionReturn(0);
1937d4002b98SHong Zhang   }
1938d4002b98SHong Zhang   /* if the a->colidx are the same */
1939d4002b98SHong Zhang   ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr);
1940d4002b98SHong Zhang   if (!*flg) PetscFunctionReturn(0);
1941d4002b98SHong Zhang   /* if a->val are the same */
1942d4002b98SHong Zhang   ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr);
1943d4002b98SHong Zhang   PetscFunctionReturn(0);
1944d4002b98SHong Zhang }
1945d4002b98SHong Zhang 
1946d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
1947d4002b98SHong Zhang {
1948d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1949d4002b98SHong Zhang 
1950d4002b98SHong Zhang   PetscFunctionBegin;
1951d4002b98SHong Zhang   a->idiagvalid  = PETSC_FALSE;
1952d4002b98SHong Zhang   a->ibdiagvalid = PETSC_FALSE;
1953d4002b98SHong Zhang   PetscFunctionReturn(0);
1954d4002b98SHong Zhang }
1955d4002b98SHong Zhang 
1956d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A)
1957d4002b98SHong Zhang {
1958d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1959d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1960d4002b98SHong Zhang   PetscInt    i;
1961d4002b98SHong Zhang   PetscScalar *val = a->val;
1962d4002b98SHong Zhang 
1963d4002b98SHong Zhang   PetscFunctionBegin;
1964d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) {
1965d4002b98SHong Zhang     val[i] = PetscConj(val[i]);
1966d4002b98SHong Zhang   }
1967d4002b98SHong Zhang #else
1968d4002b98SHong Zhang   PetscFunctionBegin;
1969d4002b98SHong Zhang #endif
1970d4002b98SHong Zhang   PetscFunctionReturn(0);
1971d4002b98SHong Zhang }
1972