xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 3a7d0413a690b3ac55568f51e4c3dc23a888f57d)
1d4002b98SHong Zhang /*
2d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
3d4002b98SHong Zhang */
4d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I   "petscmat.h"  I*/
5d4002b98SHong Zhang #include <petscblaslapack.h>
6d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
7ed73aabaSBarry Smith 
8ed73aabaSBarry Smith static PetscBool  cited      = PETSC_FALSE;
99371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n"
10ed73aabaSBarry Smith                                " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n"
11ed73aabaSBarry Smith                                " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n"
12ed73aabaSBarry Smith                                " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n"
13ed73aabaSBarry Smith                                " year = 2018\n"
14ed73aabaSBarry Smith                                "}\n";
15ed73aabaSBarry Smith 
165f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
174243e2ceSHong Zhang 
18d4002b98SHong Zhang   #include <immintrin.h>
19d4002b98SHong Zhang 
20d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
21d4002b98SHong Zhang     #define _MM_SCALE_8 8
22d4002b98SHong Zhang   #endif
23d4002b98SHong Zhang 
24d4002b98SHong Zhang   #if defined(__AVX512F__)
25d4002b98SHong Zhang     /* these do not work
26d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
27d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
28d4002b98SHong Zhang   */
29d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
30d4002b98SHong Zhang       /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
31ef588d5cSRichard Tran Mills       vec_idx  = _mm256_loadu_si256((__m256i const *)acolidx); \
32ef588d5cSRichard Tran Mills       vec_vals = _mm512_loadu_pd(aval); \
33d4002b98SHong Zhang       vec_x    = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \
34a48a6482SHong Zhang       vec_y    = _mm512_fmadd_pd(vec_x, vec_vals, vec_y)
355f70456aSHong Zhang   #elif defined(__AVX2__) && defined(__FMA__)
36a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
37ef588d5cSRichard Tran Mills       vec_vals = _mm256_loadu_pd(aval); \
38ef588d5cSRichard Tran Mills       vec_idx  = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \
39a48a6482SHong Zhang       vec_x    = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \
40a48a6482SHong Zhang       vec_y    = _mm256_fmadd_pd(vec_x, vec_vals, vec_y)
41d4002b98SHong Zhang   #endif
42d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */
43d4002b98SHong Zhang 
445d83a8b1SBarry Smith /*@
45d4002b98SHong Zhang   MatSeqSELLSetPreallocation - For good matrix assembly performance
4620f4b53cSBarry Smith   the user should preallocate the matrix storage by setting the parameter `nz`
4720f4b53cSBarry Smith   (or the array `nnz`).
48d4002b98SHong Zhang 
49d083f849SBarry Smith   Collective
50d4002b98SHong Zhang 
51d4002b98SHong Zhang   Input Parameters:
5211a5261eSBarry Smith + B       - The `MATSEQSELL` matrix
5320f4b53cSBarry Smith . rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided
5420f4b53cSBarry Smith - rlen    - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL`
5567be906fSBarry Smith 
5667be906fSBarry Smith   Level: intermediate
57d4002b98SHong Zhang 
58d4002b98SHong Zhang   Notes:
5967be906fSBarry Smith   Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
6067be906fSBarry Smith   Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
6120f4b53cSBarry Smith   allocation.
62d4002b98SHong Zhang 
6311a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
64d4002b98SHong Zhang   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
6567be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
66d4002b98SHong Zhang   malloc in them to see if additional memory allocation was needed.
67d4002b98SHong Zhang 
68fe59aa6dSJacob Faibussowitsch   Developer Notes:
6967be906fSBarry Smith   Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
70d4002b98SHong Zhang   entries or columns indices.
71d4002b98SHong Zhang 
72c7ee91abSRichard Tran Mills   The maximum number of nonzeos in any row should be as accurate as possible.
73c7ee91abSRichard Tran Mills   If it is underestimated, you will get bad performance due to reallocation
7467be906fSBarry Smith   (`MatSeqXSELLReallocateSELL()`).
75d4002b98SHong Zhang 
7667be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
77d4002b98SHong Zhang  @*/
78d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[])
79d71ae5a4SJacob Faibussowitsch {
80d4002b98SHong Zhang   PetscFunctionBegin;
81d4002b98SHong Zhang   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
82d4002b98SHong Zhang   PetscValidType(B, 1);
83cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen));
843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85d4002b98SHong Zhang }
86d4002b98SHong Zhang 
87d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[])
88d71ae5a4SJacob Faibussowitsch {
89d4002b98SHong Zhang   Mat_SeqSELL *b;
90d4002b98SHong Zhang   PetscInt     i, j, totalslices;
91773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
924e58db63SHong Zhang   PetscInt rlenmax = 0;
934e58db63SHong Zhang #endif
94d4002b98SHong Zhang   PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE;
95d4002b98SHong Zhang 
96d4002b98SHong Zhang   PetscFunctionBegin;
97d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
98d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
99d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
100d4002b98SHong Zhang     maxallocrow    = 0;
101d4002b98SHong Zhang   }
102d4002b98SHong Zhang 
1039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
1049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
105d4002b98SHong Zhang 
106d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
107d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
10808401ef6SPierre Jolivet   PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow);
109d4002b98SHong Zhang   if (rlen) {
110d4002b98SHong Zhang     for (i = 0; i < B->rmap->n; i++) {
11108401ef6SPierre Jolivet       PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]);
11208401ef6SPierre Jolivet       PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n);
113d4002b98SHong Zhang     }
114d4002b98SHong Zhang   }
115d4002b98SHong Zhang 
116d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
117d4002b98SHong Zhang 
118d4002b98SHong Zhang   b = (Mat_SeqSELL *)B->data;
119d4002b98SHong Zhang 
12007e43b41SHong Zhang   if (!b->sliceheight) { /* not set yet */
121773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
12207e43b41SHong Zhang     b->sliceheight = 16;
12307e43b41SHong Zhang #else
12407e43b41SHong Zhang     b->sliceheight = 8;
12507e43b41SHong Zhang #endif
12607e43b41SHong Zhang   }
12707e43b41SHong Zhang   totalslices    = PetscCeilInt(B->rmap->n, b->sliceheight);
128d4002b98SHong Zhang   b->totalslices = totalslices;
129d4002b98SHong Zhang   if (!skipallocation) {
13007e43b41SHong Zhang     if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n));
131d4002b98SHong Zhang 
132d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
1339566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx));
134d4002b98SHong Zhang     }
135d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
136d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
137d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
138773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1394e58db63SHong Zhang       rlenmax = maxallocrow;
1404e58db63SHong Zhang       /* Pad the slice to DEVICE_MEM_ALIGN */
1414e58db63SHong Zhang       while (b->sliceheight * maxallocrow % DEVICE_MEM_ALIGN) maxallocrow++;
1424e58db63SHong Zhang #endif
14307e43b41SHong Zhang       for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow;
144d4002b98SHong Zhang     } else {
145773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1464e58db63SHong Zhang       PetscInt mul = DEVICE_MEM_ALIGN / b->sliceheight;
1474e58db63SHong Zhang #endif
148d4002b98SHong Zhang       maxallocrow  = 0;
149d4002b98SHong Zhang       b->sliidx[0] = 0;
150d4002b98SHong Zhang       for (i = 1; i < totalslices; i++) {
151d4002b98SHong Zhang         b->sliidx[i] = 0;
15207e43b41SHong Zhang         for (j = 0; j < b->sliceheight; j++) { b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]); }
153773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
154773bf0f6SHong Zhang         if (mul != 0) { /* Pad the slice to DEVICE_MEM_ALIGN if sliceheight < DEVICE_MEM_ALIGN */
1554e58db63SHong Zhang           rlenmax      = PetscMax(b->sliidx[i], rlenmax);
1564e58db63SHong Zhang           b->sliidx[i] = ((b->sliidx[i] - 1) / mul + 1) * mul;
157773bf0f6SHong Zhang         }
1584e58db63SHong Zhang #endif
159d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i], maxallocrow);
16007e43b41SHong Zhang         PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i]));
161d4002b98SHong Zhang       }
162d4002b98SHong Zhang       /* last slice */
163d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
16407e43b41SHong Zhang       for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]);
165773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
166773bf0f6SHong Zhang       if (mul != 0) {
1674e58db63SHong Zhang         rlenmax                = PetscMax(b->sliidx[i], rlenmax);
1684e58db63SHong Zhang         b->sliidx[totalslices] = ((b->sliidx[totalslices] - 1) / mul + 1) * mul;
169773bf0f6SHong Zhang       }
1704e58db63SHong Zhang #endif
171d4002b98SHong Zhang       maxallocrow            = PetscMax(b->sliidx[totalslices], maxallocrow);
17207e43b41SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices];
173d4002b98SHong Zhang     }
174d4002b98SHong Zhang 
175d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
176d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
1779566063dSJacob Faibussowitsch     PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx));
178d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
1799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx));
180d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
18107e43b41SHong Zhang     PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen));
182d4002b98SHong Zhang 
183d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
184d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
185d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
186d4002b98SHong Zhang   } else {
187d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
188d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
189d4002b98SHong Zhang   }
190d4002b98SHong Zhang 
191d4002b98SHong Zhang   b->nz          = 0;
192d4002b98SHong Zhang   b->maxallocrow = maxallocrow;
193773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1944e58db63SHong Zhang   b->rlenmax = rlenmax;
1954e58db63SHong Zhang #else
196d4002b98SHong Zhang   b->rlenmax = maxallocrow;
1974e58db63SHong Zhang #endif
198d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
199d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
2001baa6e33SBarry Smith   if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
2013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
202d4002b98SHong Zhang }
203d4002b98SHong Zhang 
204ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
205d71ae5a4SJacob Faibussowitsch {
2066108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2076108893eSStefano Zampini   PetscInt     shift;
2086108893eSStefano Zampini 
2096108893eSStefano Zampini   PetscFunctionBegin;
210aed4548fSBarry Smith   PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row);
2116108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
21207e43b41SHong Zhang   shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight);
213*3a7d0413SPierre Jolivet   if (!a->getrowcols) PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals));
2146108893eSStefano Zampini   if (idx) {
2156108893eSStefano Zampini     PetscInt j;
21607e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j];
2176108893eSStefano Zampini     *idx = a->getrowcols;
2186108893eSStefano Zampini   }
2196108893eSStefano Zampini   if (v) {
2206108893eSStefano Zampini     PetscInt j;
22107e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j];
2226108893eSStefano Zampini     *v = a->getrowvals;
2236108893eSStefano Zampini   }
2243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2256108893eSStefano Zampini }
2266108893eSStefano Zampini 
227ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
228d71ae5a4SJacob Faibussowitsch {
2296108893eSStefano Zampini   PetscFunctionBegin;
2303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2316108893eSStefano Zampini }
2326108893eSStefano Zampini 
233d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
234d71ae5a4SJacob Faibussowitsch {
235d4002b98SHong Zhang   Mat          B;
236d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
237e3f1f374SStefano Zampini   PetscInt     i;
238d4002b98SHong Zhang 
239d4002b98SHong Zhang   PetscFunctionBegin;
240ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
241ad013a7bSRichard Tran Mills     B = *newmat;
2429566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
243ad013a7bSRichard Tran Mills   } else {
2449566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2459566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2469566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQAIJ));
2479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen));
248ad013a7bSRichard Tran Mills   }
249d4002b98SHong Zhang 
250e3f1f374SStefano Zampini   for (i = 0; i < A->rmap->n; i++) {
251e108cb99SStefano Zampini     PetscInt     nz = 0, *cols = NULL;
252e108cb99SStefano Zampini     PetscScalar *vals = NULL;
253e3f1f374SStefano Zampini 
2549566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals));
2559566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES));
2569566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals));
257d4002b98SHong Zhang   }
258e3f1f374SStefano Zampini 
2599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
261d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
262d4002b98SHong Zhang 
263d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2649566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
265d4002b98SHong Zhang   } else {
266d4002b98SHong Zhang     *newmat = B;
267d4002b98SHong Zhang   }
2683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
269d4002b98SHong Zhang }
270d4002b98SHong Zhang 
271d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
272d4002b98SHong Zhang 
273d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
274d71ae5a4SJacob Faibussowitsch {
275d4002b98SHong Zhang   Mat                B;
276d4002b98SHong Zhang   Mat_SeqAIJ        *a  = (Mat_SeqAIJ *)A->data;
277d4002b98SHong Zhang   PetscInt          *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols;
278d4002b98SHong Zhang   const PetscInt    *cols;
279d4002b98SHong Zhang   const PetscScalar *vals;
280d4002b98SHong Zhang 
281d4002b98SHong Zhang   PetscFunctionBegin;
282ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
283ad013a7bSRichard Tran Mills     B = *newmat;
284ad013a7bSRichard Tran Mills   } else {
285d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) || !a->ilen) {
2869566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(m, &rowlengths));
287ad540459SPierre Jolivet       for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i];
288d5e5b2e5SBarry Smith     }
289d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) && a->ilen) {
290d5e5b2e5SBarry Smith       PetscBool eq;
2919566063dSJacob Faibussowitsch       PetscCall(PetscMemcmp(rowlengths, a->ilen, m * sizeof(PetscInt), &eq));
29228b400f6SJacob Faibussowitsch       PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect");
2939566063dSJacob Faibussowitsch       PetscCall(PetscFree(rowlengths));
294d5e5b2e5SBarry Smith       rowlengths = a->ilen;
295d5e5b2e5SBarry Smith     } else if (a->ilen) rowlengths = a->ilen;
2969566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2979566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, m, n, m, n));
2989566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQSELL));
2999566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths));
3009566063dSJacob Faibussowitsch     if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths));
301ad013a7bSRichard Tran Mills   }
302d4002b98SHong Zhang 
303d4002b98SHong Zhang   for (row = 0; row < m; row++) {
3049566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
3059566063dSJacob Faibussowitsch     PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES));
3069566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
307d4002b98SHong Zhang   }
3089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
3099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
310d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
311d4002b98SHong Zhang 
312d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
3139566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
314d4002b98SHong Zhang   } else {
315d4002b98SHong Zhang     *newmat = B;
316d4002b98SHong Zhang   }
3173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
318d4002b98SHong Zhang }
319d4002b98SHong Zhang 
320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy)
321d71ae5a4SJacob Faibussowitsch {
322d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
323d4002b98SHong Zhang   PetscScalar       *y;
324d4002b98SHong Zhang   const PetscScalar *x;
325d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
326d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
327d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
3287285fed1SHong Zhang   PetscInt           i, j;
329d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
330d4002b98SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
331d4002b98SHong Zhang   __m256i  vec_idx;
332d4002b98SHong Zhang   __mmask8 mask;
333d4002b98SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
334d4002b98SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
3355f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
336a48a6482SHong Zhang   __m128i   vec_idx;
337a48a6482SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
338a48a6482SHong Zhang   MatScalar yval;
339a48a6482SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
34021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
341d4002b98SHong Zhang   __m128d   vec_x_tmp;
342d4002b98SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
343d4002b98SHong Zhang   MatScalar yval;
344d4002b98SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
345d4002b98SHong Zhang #else
34607e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
34707e43b41SHong Zhang   PetscScalar *sum;
348d4002b98SHong Zhang #endif
349d4002b98SHong Zhang 
350d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
351d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
352d4002b98SHong Zhang #endif
353d4002b98SHong Zhang 
354d4002b98SHong Zhang   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
3569566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy, &y));
357d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
35807e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
359d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
360d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
361d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
362d4002b98SHong Zhang 
363d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
364d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
365d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
366d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
367d4002b98SHong Zhang 
368da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
369d4002b98SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
370d4002b98SHong Zhang     case 3:
371d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3729371c9d4SSatish Balay       acolidx += 8;
3739371c9d4SSatish Balay       aval += 8;
374d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3759371c9d4SSatish Balay       acolidx += 8;
3769371c9d4SSatish Balay       aval += 8;
377d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
3789371c9d4SSatish Balay       acolidx += 8;
3799371c9d4SSatish Balay       aval += 8;
380d4002b98SHong Zhang       j += 3;
381d4002b98SHong Zhang       break;
382d4002b98SHong Zhang     case 2:
383d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3849371c9d4SSatish Balay       acolidx += 8;
3859371c9d4SSatish Balay       aval += 8;
386d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3879371c9d4SSatish Balay       acolidx += 8;
3889371c9d4SSatish Balay       aval += 8;
389d4002b98SHong Zhang       j += 2;
390d4002b98SHong Zhang       break;
391d4002b98SHong Zhang     case 1:
392d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3939371c9d4SSatish Balay       acolidx += 8;
3949371c9d4SSatish Balay       aval += 8;
395d4002b98SHong Zhang       j += 1;
396d4002b98SHong Zhang       break;
397d4002b98SHong Zhang     }
398d4002b98SHong Zhang   #pragma novector
399d4002b98SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
400d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4019371c9d4SSatish Balay       acolidx += 8;
4029371c9d4SSatish Balay       aval += 8;
403d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
4049371c9d4SSatish Balay       acolidx += 8;
4059371c9d4SSatish Balay       aval += 8;
406d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
4079371c9d4SSatish Balay       acolidx += 8;
4089371c9d4SSatish Balay       aval += 8;
409d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
4109371c9d4SSatish Balay       acolidx += 8;
4119371c9d4SSatish Balay       aval += 8;
412d4002b98SHong Zhang     }
413d4002b98SHong Zhang 
414d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
415d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
416d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
417d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
418d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
419ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y);
420d4002b98SHong Zhang     } else {
421ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&y[8 * i], vec_y);
422d4002b98SHong Zhang     }
423d4002b98SHong Zhang   }
4245f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
42507e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
426a48a6482SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
427a48a6482SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
428a48a6482SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
429a48a6482SHong Zhang 
430a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
431a48a6482SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
432a48a6482SHong Zhang       rows_left = A->rmap->n - 8 * i;
433a48a6482SHong Zhang       for (r = 0; r < rows_left; ++r) {
434a48a6482SHong Zhang         yval       = (MatScalar)0;
435a48a6482SHong Zhang         row        = 8 * i + r;
436a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
437a48a6482SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
438a48a6482SHong Zhang         y[row] = yval;
439a48a6482SHong Zhang       }
440a48a6482SHong Zhang       break;
441a48a6482SHong Zhang     }
442a48a6482SHong Zhang 
443a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
444a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
445a48a6482SHong Zhang 
446a48a6482SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
447a48a6482SHong Zhang   #pragma novector
448a48a6482SHong Zhang   #pragma unroll(2)
449a48a6482SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
450a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4519371c9d4SSatish Balay       aval += 4;
4529371c9d4SSatish Balay       acolidx += 4;
453a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2);
4549371c9d4SSatish Balay       aval += 4;
4559371c9d4SSatish Balay       acolidx += 4;
456a48a6482SHong Zhang     }
457a48a6482SHong Zhang 
458ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8, vec_y);
459ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
460a48a6482SHong Zhang   }
46121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
46207e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
463d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
464d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
465d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
466d4002b98SHong Zhang 
467d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
468d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
469d4002b98SHong Zhang 
470d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
471d4002b98SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
472d4002b98SHong Zhang       rows_left = A->rmap->n - 8 * i;
473d4002b98SHong Zhang       for (r = 0; r < rows_left; ++r) {
474d4002b98SHong Zhang         yval       = (MatScalar)0;
475d4002b98SHong Zhang         row        = 8 * i + r;
476d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
477d4002b98SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
478d4002b98SHong Zhang         y[row] = yval;
479d4002b98SHong Zhang       }
480d4002b98SHong Zhang       break;
481d4002b98SHong Zhang     }
482d4002b98SHong Zhang 
483d4002b98SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
484a48a6482SHong Zhang   #pragma novector
485a48a6482SHong Zhang   #pragma unroll(2)
4867285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
487d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
488165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
489d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
490d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
491d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
492d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
493d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
494d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
495d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
496d4002b98SHong Zhang       aval += 4;
497d4002b98SHong Zhang 
498d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
499d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
500d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
501d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
502d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
503d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
504d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
505d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
506d4002b98SHong Zhang       aval += 4;
507d4002b98SHong Zhang     }
508d4002b98SHong Zhang 
509d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8, vec_y);
510d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
511d4002b98SHong Zhang   }
512d4002b98SHong Zhang #else
51307e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
514d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
51507e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
5162d1451d4SHong Zhang       sum[j] = 0.0;
51707e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
518d4002b98SHong Zhang     }
51907e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */
52007e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j];
521d4002b98SHong Zhang     } else {
52207e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j];
523d4002b98SHong Zhang     }
524d4002b98SHong Zhang   }
52507e43b41SHong Zhang   PetscCall(PetscFree(sum));
526d4002b98SHong Zhang #endif
527d4002b98SHong Zhang 
5289566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */
5299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
5309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy, &y));
5313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
532d4002b98SHong Zhang }
533d4002b98SHong Zhang 
534d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz)
536d71ae5a4SJacob Faibussowitsch {
537d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
538d4002b98SHong Zhang   PetscScalar       *y, *z;
539d4002b98SHong Zhang   const PetscScalar *x;
540d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
541d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
542d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
543d4002b98SHong Zhang   PetscInt           i, j;
544d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5457285fed1SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
546d4002b98SHong Zhang   __m256i  vec_idx;
5475ea36cfaSSatish Balay   __mmask8 mask = 0;
5487285fed1SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
5497285fed1SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
55021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5517285fed1SHong Zhang   __m128d   vec_x_tmp;
5527285fed1SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
5537285fed1SHong Zhang   MatScalar yval;
5547285fed1SHong Zhang   PetscInt  r, row, nnz_in_row;
555d4002b98SHong Zhang #else
55607e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
55707e43b41SHong Zhang   PetscScalar *sum;
558d4002b98SHong Zhang #endif
559d4002b98SHong Zhang 
560d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
561d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
562d4002b98SHong Zhang #endif
563d4002b98SHong Zhang 
564d4002b98SHong Zhang   PetscFunctionBegin;
5652d1451d4SHong Zhang   if (!a->nz) {
5662d1451d4SHong Zhang     PetscCall(VecCopy(yy, zz));
5672d1451d4SHong Zhang     PetscFunctionReturn(PETSC_SUCCESS);
5682d1451d4SHong Zhang   }
5699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
5709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayPair(yy, zz, &y, &z));
571d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
57207e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
5737285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
5747285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5757285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5767285fed1SHong Zhang 
577d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
578d4002b98SHong Zhang       mask  = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
579ef588d5cSRichard Tran Mills       vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]);
5807285fed1SHong Zhang     } else {
581ef588d5cSRichard Tran Mills       vec_y = _mm512_loadu_pd(&y[8 * i]);
5827285fed1SHong Zhang     }
5837285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5847285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5857285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5867285fed1SHong Zhang 
587da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
5887285fed1SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
5897285fed1SHong Zhang     case 3:
5907285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
5919371c9d4SSatish Balay       acolidx += 8;
5929371c9d4SSatish Balay       aval += 8;
5937285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
5949371c9d4SSatish Balay       acolidx += 8;
5959371c9d4SSatish Balay       aval += 8;
5967285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
5979371c9d4SSatish Balay       acolidx += 8;
5989371c9d4SSatish Balay       aval += 8;
5997285fed1SHong Zhang       j += 3;
6007285fed1SHong Zhang       break;
6017285fed1SHong Zhang     case 2:
6027285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6039371c9d4SSatish Balay       acolidx += 8;
6049371c9d4SSatish Balay       aval += 8;
6057285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6069371c9d4SSatish Balay       acolidx += 8;
6079371c9d4SSatish Balay       aval += 8;
6087285fed1SHong Zhang       j += 2;
6097285fed1SHong Zhang       break;
6107285fed1SHong Zhang     case 1:
6117285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6129371c9d4SSatish Balay       acolidx += 8;
6139371c9d4SSatish Balay       aval += 8;
6147285fed1SHong Zhang       j += 1;
6157285fed1SHong Zhang       break;
6167285fed1SHong Zhang     }
6177285fed1SHong Zhang   #pragma novector
6187285fed1SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
6197285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6209371c9d4SSatish Balay       acolidx += 8;
6219371c9d4SSatish Balay       aval += 8;
6227285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6239371c9d4SSatish Balay       acolidx += 8;
6249371c9d4SSatish Balay       aval += 8;
6257285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
6269371c9d4SSatish Balay       acolidx += 8;
6279371c9d4SSatish Balay       aval += 8;
6287285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
6299371c9d4SSatish Balay       acolidx += 8;
6309371c9d4SSatish Balay       aval += 8;
6317285fed1SHong Zhang     }
6327285fed1SHong Zhang 
6337285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
6347285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
6357285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
6367285fed1SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
637ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y);
638d4002b98SHong Zhang     } else {
639ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&z[8 * i], vec_y);
640d4002b98SHong Zhang     }
6417285fed1SHong Zhang   }
64221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
64307e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
6447285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
6457285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6467285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6477285fed1SHong Zhang 
6487285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
6497285fed1SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
6507285fed1SHong Zhang       for (r = 0; r < (A->rmap->n & 0x07); ++r) {
6517285fed1SHong Zhang         row        = 8 * i + r;
6527285fed1SHong Zhang         yval       = (MatScalar)0.0;
6537285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6547285fed1SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
6557285fed1SHong Zhang         z[row] = y[row] + yval;
6567285fed1SHong Zhang       }
6577285fed1SHong Zhang       break;
6587285fed1SHong Zhang     }
6597285fed1SHong Zhang 
6607285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y + 8 * i);
6617285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y + 8 * i + 4);
6627285fed1SHong Zhang 
6637285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6647285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
6657285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
666165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
6677285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6687285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
669165f9cc3SJed Brown       vec_x     = _mm256_setzero_pd();
6707285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6717285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6727285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6737285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6747285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
6757285fed1SHong Zhang       aval += 4;
6767285fed1SHong Zhang 
6777285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6787285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6797285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6807285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6817285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6827285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6837285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6847285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
6857285fed1SHong Zhang       aval += 4;
6867285fed1SHong Zhang     }
6877285fed1SHong Zhang 
6887285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8, vec_y);
6897285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8 + 4, vec_y2);
6907285fed1SHong Zhang   }
691d4002b98SHong Zhang #else
69207e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
6937285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
69407e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
6952d1451d4SHong Zhang       sum[j] = 0.0;
69607e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
697d4002b98SHong Zhang     }
69807e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
69907e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
700d4002b98SHong Zhang     } else {
70107e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
7027285fed1SHong Zhang     }
703d4002b98SHong Zhang   }
70407e43b41SHong Zhang   PetscCall(PetscFree(sum));
705d4002b98SHong Zhang #endif
706d4002b98SHong Zhang 
7079566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz));
7089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
7099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayPair(yy, zz, &y, &z));
7103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
711d4002b98SHong Zhang }
712d4002b98SHong Zhang 
713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy)
714d71ae5a4SJacob Faibussowitsch {
715d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
716d4002b98SHong Zhang   PetscScalar       *y;
717d4002b98SHong Zhang   const PetscScalar *x;
718d4002b98SHong Zhang   const MatScalar   *aval    = a->val;
719d4002b98SHong Zhang   const PetscInt    *acolidx = a->colidx;
72007e43b41SHong Zhang   PetscInt           i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight;
721d4002b98SHong Zhang 
722d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
723d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
724d4002b98SHong Zhang #endif
725d4002b98SHong Zhang 
726d4002b98SHong Zhang   PetscFunctionBegin;
727b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7289566063dSJacob Faibussowitsch     PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy));
7293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
7309fc32365SStefano Zampini   }
7319566063dSJacob Faibussowitsch   if (zz != yy) PetscCall(VecCopy(zz, yy));
7322d1451d4SHong Zhang 
7332d1451d4SHong Zhang   if (a->nz) {
7349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(xx, &x));
7359566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy, &y));
736d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
73707e43b41SHong Zhang       if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
73807e43b41SHong Zhang         for (r = 0; r < (A->rmap->n % sliceheight); ++r) {
73907e43b41SHong Zhang           row        = sliceheight * i + r;
7407285fed1SHong Zhang           nnz_in_row = a->rlen[row];
74107e43b41SHong Zhang           for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row];
7427285fed1SHong Zhang         }
7437285fed1SHong Zhang         break;
7447285fed1SHong Zhang       }
74507e43b41SHong Zhang       for (r = 0; r < sliceheight; ++r)
74607e43b41SHong Zhang         for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r];
747d4002b98SHong Zhang     }
7482d1451d4SHong Zhang     PetscCall(PetscLogFlops(2.0 * a->nz));
7499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(xx, &x));
7509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy, &y));
7512d1451d4SHong Zhang   }
7523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
753d4002b98SHong Zhang }
754d4002b98SHong Zhang 
755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy)
756d71ae5a4SJacob Faibussowitsch {
757d4002b98SHong Zhang   PetscFunctionBegin;
758b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7599566063dSJacob Faibussowitsch     PetscCall(MatMult_SeqSELL(A, xx, yy));
7609fc32365SStefano Zampini   } else {
7619566063dSJacob Faibussowitsch     PetscCall(VecSet(yy, 0.0));
7629566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy));
7639fc32365SStefano Zampini   }
7643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
765d4002b98SHong Zhang }
766d4002b98SHong Zhang 
767d4002b98SHong Zhang /*
768d4002b98SHong Zhang      Checks for missing diagonals
769d4002b98SHong Zhang */
770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A, PetscBool *missing, PetscInt *d)
771d71ae5a4SJacob Faibussowitsch {
772d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
773d4002b98SHong Zhang   PetscInt    *diag, i;
774d4002b98SHong Zhang 
775d4002b98SHong Zhang   PetscFunctionBegin;
776d4002b98SHong Zhang   *missing = PETSC_FALSE;
777f4f49eeaSPierre Jolivet   if (A->rmap->n > 0 && !a->colidx) {
778d4002b98SHong Zhang     *missing = PETSC_TRUE;
779d4002b98SHong Zhang     if (d) *d = 0;
7809566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n"));
781d4002b98SHong Zhang   } else {
782d4002b98SHong Zhang     diag = a->diag;
783d4002b98SHong Zhang     for (i = 0; i < A->rmap->n; i++) {
784d4002b98SHong Zhang       if (diag[i] == -1) {
785d4002b98SHong Zhang         *missing = PETSC_TRUE;
786d4002b98SHong Zhang         if (d) *d = i;
7879566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Matrix is missing diagonal number %" PetscInt_FMT "\n", i));
788d4002b98SHong Zhang         break;
789d4002b98SHong Zhang       }
790d4002b98SHong Zhang     }
791d4002b98SHong Zhang   }
7923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
793d4002b98SHong Zhang }
794d4002b98SHong Zhang 
795d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
796d71ae5a4SJacob Faibussowitsch {
797d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
798d4002b98SHong Zhang   PetscInt     i, j, m = A->rmap->n, shift;
799d4002b98SHong Zhang 
800d4002b98SHong Zhang   PetscFunctionBegin;
801d4002b98SHong Zhang   if (!a->diag) {
8029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &a->diag));
803d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
804d4002b98SHong Zhang   }
805d4002b98SHong Zhang   for (i = 0; i < m; i++) {                                          /* loop over rows */
80607e43b41SHong Zhang     shift      = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
807d4002b98SHong Zhang     a->diag[i] = -1;
808d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
80907e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
81007e43b41SHong Zhang         a->diag[i] = shift + a->sliceheight * j;
811d4002b98SHong Zhang         break;
812d4002b98SHong Zhang       }
813d4002b98SHong Zhang     }
814d4002b98SHong Zhang   }
8153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
816d4002b98SHong Zhang }
817d4002b98SHong Zhang 
818d4002b98SHong Zhang /*
819d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
820d4002b98SHong Zhang */
821d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift)
822d71ae5a4SJacob Faibussowitsch {
823d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
824d4002b98SHong Zhang   PetscInt     i, *diag, m = A->rmap->n;
825d4002b98SHong Zhang   MatScalar   *val = a->val;
826d4002b98SHong Zhang   PetscScalar *idiag, *mdiag;
827d4002b98SHong Zhang 
828d4002b98SHong Zhang   PetscFunctionBegin;
8293ba16761SJacob Faibussowitsch   if (a->idiagvalid) PetscFunctionReturn(PETSC_SUCCESS);
8309566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqSELL(A));
831d4002b98SHong Zhang   diag = a->diag;
832d4002b98SHong Zhang   if (!a->idiag) {
8339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work));
834d4002b98SHong Zhang     val = a->val;
835d4002b98SHong Zhang   }
836d4002b98SHong Zhang   mdiag = a->mdiag;
837d4002b98SHong Zhang   idiag = a->idiag;
838d4002b98SHong Zhang 
839d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
840d4002b98SHong Zhang     for (i = 0; i < m; i++) {
841d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
842d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
8430fdf79fbSJacob Faibussowitsch         PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i);
8449566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i));
845d4002b98SHong Zhang         A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
846d4002b98SHong Zhang         A->factorerror_zeropivot_value = 0.0;
847d4002b98SHong Zhang         A->factorerror_zeropivot_row   = i;
848d4002b98SHong Zhang       }
849d4002b98SHong Zhang       idiag[i] = 1.0 / val[diag[i]];
850d4002b98SHong Zhang     }
8519566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(m));
852d4002b98SHong Zhang   } else {
853d4002b98SHong Zhang     for (i = 0; i < m; i++) {
854d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
855d4002b98SHong Zhang       idiag[i] = omega / (fshift + val[diag[i]]);
856d4002b98SHong Zhang     }
8579566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0 * m));
858d4002b98SHong Zhang   }
859d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
8603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
861d4002b98SHong Zhang }
862d4002b98SHong Zhang 
863d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
864d71ae5a4SJacob Faibussowitsch {
865d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
866d4002b98SHong Zhang 
867d4002b98SHong Zhang   PetscFunctionBegin;
8689566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices]));
8699566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
8703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
871d4002b98SHong Zhang }
872d4002b98SHong Zhang 
873d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A)
874d71ae5a4SJacob Faibussowitsch {
875d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
876d4002b98SHong Zhang 
877d4002b98SHong Zhang   PetscFunctionBegin;
8783ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz));
8799566063dSJacob Faibussowitsch   PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx));
8809566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
8819566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
8829566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->diag));
8839566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->rlen));
8849566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sliidx));
8859566063dSJacob Faibussowitsch   PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work));
8869566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->solve_work));
8879566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
8889566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->saved_values));
8899566063dSJacob Faibussowitsch   PetscCall(PetscFree2(a->getrowcols, a->getrowvals));
8909566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->data));
891773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
89290d2215bSHong Zhang   PetscCall(PetscFree(a->chunk_slice_map));
89390d2215bSHong Zhang #endif
894d4002b98SHong Zhang 
8959566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
8969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
8979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
8989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL));
8992e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL));
9002e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL));
901b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqaij_C", NULL));
9022d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
903b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellcuda_C", NULL));
9042d1451d4SHong Zhang #endif
905773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
906773bf0f6SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellhip_C", NULL));
907773bf0f6SHong Zhang #endif
90807e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL));
90907e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL));
91007e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL));
911b921024eSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetVarSliceSize_C", NULL));
91207e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL));
9133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
914d4002b98SHong Zhang }
915d4002b98SHong Zhang 
916d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg)
917d71ae5a4SJacob Faibussowitsch {
918d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
919d4002b98SHong Zhang 
920d4002b98SHong Zhang   PetscFunctionBegin;
921d4002b98SHong Zhang   switch (op) {
922d71ae5a4SJacob Faibussowitsch   case MAT_ROW_ORIENTED:
923d71ae5a4SJacob Faibussowitsch     a->roworiented = flg;
924d71ae5a4SJacob Faibussowitsch     break;
925d71ae5a4SJacob Faibussowitsch   case MAT_KEEP_NONZERO_PATTERN:
926d71ae5a4SJacob Faibussowitsch     a->keepnonzeropattern = flg;
927d71ae5a4SJacob Faibussowitsch     break;
928d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATIONS:
929d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? 0 : 1);
930d71ae5a4SJacob Faibussowitsch     break;
931d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATION_ERR:
932d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -1 : 0);
933d71ae5a4SJacob Faibussowitsch     break;
934d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_ALLOCATION_ERR:
935d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -2 : 0);
936d71ae5a4SJacob Faibussowitsch     break;
937d71ae5a4SJacob Faibussowitsch   case MAT_UNUSED_NONZERO_LOCATION_ERR:
938d71ae5a4SJacob Faibussowitsch     a->nounused = (flg ? -1 : 0);
939d71ae5a4SJacob Faibussowitsch     break;
940d71ae5a4SJacob Faibussowitsch   default:
941888c827cSStefano Zampini     break;
942d4002b98SHong Zhang   }
9433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
944d4002b98SHong Zhang }
945d4002b98SHong Zhang 
946d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v)
947d71ae5a4SJacob Faibussowitsch {
948d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
949d4002b98SHong Zhang   PetscInt     i, j, n, shift;
950d4002b98SHong Zhang   PetscScalar *x, zero = 0.0;
951d4002b98SHong Zhang 
952d4002b98SHong Zhang   PetscFunctionBegin;
9539566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &n));
95408401ef6SPierre Jolivet   PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
955d4002b98SHong Zhang 
956d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
957d4002b98SHong Zhang     PetscInt *diag = a->diag;
9589566063dSJacob Faibussowitsch     PetscCall(VecGetArray(v, &x));
959d4002b98SHong Zhang     for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]];
9609566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(v, &x));
9613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
962d4002b98SHong Zhang   }
963d4002b98SHong Zhang 
9649566063dSJacob Faibussowitsch   PetscCall(VecSet(v, zero));
9659566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
966d4002b98SHong Zhang   for (i = 0; i < n; i++) {                                     /* loop over rows */
96707e43b41SHong Zhang     shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
968d4002b98SHong Zhang     x[i]  = 0;
969d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
97007e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
97107e43b41SHong Zhang         x[i] = a->val[shift + a->sliceheight * j];
972d4002b98SHong Zhang         break;
973d4002b98SHong Zhang       }
974d4002b98SHong Zhang     }
975d4002b98SHong Zhang   }
9769566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
9773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
978d4002b98SHong Zhang }
979d4002b98SHong Zhang 
980d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr)
981d71ae5a4SJacob Faibussowitsch {
982d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
983d4002b98SHong Zhang   const PetscScalar *l, *r;
984d4002b98SHong Zhang   PetscInt           i, j, m, n, row;
985d4002b98SHong Zhang 
986d4002b98SHong Zhang   PetscFunctionBegin;
987d4002b98SHong Zhang   if (ll) {
988d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
989d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
9909566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &m));
99108401ef6SPierre Jolivet     PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length");
9929566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(ll, &l));
993d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
99407e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
99507e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
99607e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row];
997dab86139SHong Zhang         }
998dab86139SHong Zhang       } else {
99907e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { a->val[j] *= l[a->sliceheight * i + row]; }
1000d4002b98SHong Zhang       }
1001dab86139SHong Zhang     }
10029566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(ll, &l));
10039566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1004d4002b98SHong Zhang   }
1005d4002b98SHong Zhang   if (rr) {
10069566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &n));
100708401ef6SPierre Jolivet     PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length");
10089566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(rr, &r));
1009d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
101007e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
101107e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) {
101207e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]];
1013dab86139SHong Zhang         }
1014dab86139SHong Zhang       } else {
1015ad540459SPierre Jolivet         for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]];
1016d4002b98SHong Zhang       }
1017dab86139SHong Zhang     }
10189566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(rr, &r));
10199566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1020d4002b98SHong Zhang   }
10219566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
1022773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
10232d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
10242d1451d4SHong Zhang #endif
10253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1026d4002b98SHong Zhang }
1027d4002b98SHong Zhang 
1028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
1029d71ae5a4SJacob Faibussowitsch {
1030d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1031d4002b98SHong Zhang   PetscInt    *cp, i, k, low, high, t, row, col, l;
1032d4002b98SHong Zhang   PetscInt     shift;
1033d4002b98SHong Zhang   MatScalar   *vp;
1034d4002b98SHong Zhang 
1035d4002b98SHong Zhang   PetscFunctionBegin;
103668aafef3SStefano Zampini   for (k = 0; k < m; k++) { /* loop over requested rows */
1037d4002b98SHong Zhang     row = im[k];
1038d4002b98SHong Zhang     if (row < 0) continue;
10396bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
104007e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */
1041d4002b98SHong Zhang     cp    = a->colidx + shift;                                        /* pointer to the row */
1042d4002b98SHong Zhang     vp    = a->val + shift;                                           /* pointer to the row */
104368aafef3SStefano Zampini     for (l = 0; l < n; l++) {                                         /* loop over requested columns */
1044d4002b98SHong Zhang       col = in[l];
1045d4002b98SHong Zhang       if (col < 0) continue;
10466bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
10479371c9d4SSatish Balay       high = a->rlen[row];
10489371c9d4SSatish Balay       low  = 0; /* assume unsorted */
1049d4002b98SHong Zhang       while (high - low > 5) {
1050d4002b98SHong Zhang         t = (low + high) / 2;
105107e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1052d4002b98SHong Zhang         else low = t;
1053d4002b98SHong Zhang       }
1054d4002b98SHong Zhang       for (i = low; i < high; i++) {
105507e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
105607e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
105707e43b41SHong Zhang           *v++ = *(vp + a->sliceheight * i);
1058d4002b98SHong Zhang           goto finished;
1059d4002b98SHong Zhang         }
1060d4002b98SHong Zhang       }
1061d4002b98SHong Zhang       *v++ = 0.0;
1062d4002b98SHong Zhang     finished:;
1063d4002b98SHong Zhang     }
1064d4002b98SHong Zhang   }
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1066d4002b98SHong Zhang }
1067d4002b98SHong Zhang 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer)
1069d71ae5a4SJacob Faibussowitsch {
1070d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1071d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1072d4002b98SHong Zhang   const char       *name;
1073d4002b98SHong Zhang   PetscViewerFormat format;
1074d4002b98SHong Zhang 
1075d4002b98SHong Zhang   PetscFunctionBegin;
10769566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
1077d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1078d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1079d4002b98SHong Zhang     /*
1080*3a7d0413SPierre Jolivet     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) nofinalvalue = 1;
1081d4002b98SHong Zhang     */
10829566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
10839566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n));
10849566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz));
1085d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
10869566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue));
1087d4002b98SHong Zhang #else
10889566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue));
1089d4002b98SHong Zhang #endif
10909566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n"));
1091d4002b98SHong Zhang 
1092d4002b98SHong Zhang     for (i = 0; i < m; i++) {
109307e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1094d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1095d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
109607e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1097d4002b98SHong Zhang #else
109807e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j]));
1099d4002b98SHong Zhang #endif
1100d4002b98SHong Zhang       }
1101d4002b98SHong Zhang     }
1102d4002b98SHong Zhang     /*
1103d4002b98SHong Zhang     if (nofinalvalue) {
1104d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11059566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n",m,A->cmap->n,0.,0.));
1106d4002b98SHong Zhang #else
11079566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n",m,A->cmap->n,0.0));
1108d4002b98SHong Zhang #endif
1109d4002b98SHong Zhang     }
1110d4002b98SHong Zhang     */
11119566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)A, &name));
11129566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name));
11139566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1114d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
11153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1116d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
11179566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1118d4002b98SHong Zhang     for (i = 0; i < m; i++) {
11199566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
112007e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1121d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1122d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
112307e43b41SHong Zhang         if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
112407e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
112507e43b41SHong Zhang         } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
112607e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
112707e43b41SHong Zhang         } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
112807e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1129d4002b98SHong Zhang         }
1130d4002b98SHong Zhang #else
113107e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1132d4002b98SHong Zhang #endif
1133d4002b98SHong Zhang       }
11349566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1135d4002b98SHong Zhang     }
11369566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1137d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1138d4002b98SHong Zhang     PetscInt    cnt = 0, jcnt;
1139d4002b98SHong Zhang     PetscScalar value;
1140d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1141d4002b98SHong Zhang     PetscBool realonly = PETSC_TRUE;
1142d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1143d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1144d4002b98SHong Zhang         realonly = PETSC_FALSE;
1145d4002b98SHong Zhang         break;
1146d4002b98SHong Zhang       }
1147d4002b98SHong Zhang     }
1148d4002b98SHong Zhang #endif
1149d4002b98SHong Zhang 
11509566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1151d4002b98SHong Zhang     for (i = 0; i < m; i++) {
1152d4002b98SHong Zhang       jcnt  = 0;
115307e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1154d4002b98SHong Zhang       for (j = 0; j < A->cmap->n; j++) {
115507e43b41SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) {
1156d4002b98SHong Zhang           value = a->val[cnt++];
1157d4002b98SHong Zhang           jcnt++;
1158d4002b98SHong Zhang         } else {
1159d4002b98SHong Zhang           value = 0.0;
1160d4002b98SHong Zhang         }
1161d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1162d4002b98SHong Zhang         if (realonly) {
11639566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value)));
1164d4002b98SHong Zhang         } else {
11659566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value)));
1166d4002b98SHong Zhang         }
1167d4002b98SHong Zhang #else
11689566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value));
1169d4002b98SHong Zhang #endif
1170d4002b98SHong Zhang       }
11719566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1172d4002b98SHong Zhang     }
11739566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1174d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1175d4002b98SHong Zhang     PetscInt fshift = 1;
11769566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1177d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11789566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n"));
1179d4002b98SHong Zhang #else
11809566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n"));
1181d4002b98SHong Zhang #endif
11829566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz));
1183d4002b98SHong Zhang     for (i = 0; i < m; i++) {
118407e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1185d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1186d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
118707e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1188d4002b98SHong Zhang #else
118907e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j]));
1190d4002b98SHong Zhang #endif
1191d4002b98SHong Zhang       }
1192d4002b98SHong Zhang     }
11939566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
119468aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
119568aafef3SStefano Zampini     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
119668aafef3SStefano Zampini       PetscInt row;
11979566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1]));
119807e43b41SHong Zhang       for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
119968aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
120068aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
120107e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
120268aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
120307e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j])));
120468aafef3SStefano Zampini         } else {
120507e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j])));
120668aafef3SStefano Zampini         }
120768aafef3SStefano Zampini #else
120807e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j]));
120968aafef3SStefano Zampini #endif
121068aafef3SStefano Zampini       }
121168aafef3SStefano Zampini     }
1212d4002b98SHong Zhang   } else {
12139566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1214d4002b98SHong Zhang     if (A->factortype) {
1215d4002b98SHong Zhang       for (i = 0; i < m; i++) {
121607e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12179566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1218d4002b98SHong Zhang         /* L part */
121907e43b41SHong Zhang         for (j = shift; j < a->diag[i]; j += a->sliceheight) {
1220d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
122107e43b41SHong Zhang           if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) {
12229566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
122307e43b41SHong Zhang           } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) {
12249566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1225d4002b98SHong Zhang           } else {
12269566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1227d4002b98SHong Zhang           }
1228d4002b98SHong Zhang #else
12299566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1230d4002b98SHong Zhang #endif
1231d4002b98SHong Zhang         }
1232d4002b98SHong Zhang         /* diagonal */
1233d4002b98SHong Zhang         j = a->diag[i];
1234d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1235d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
12369566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j])));
1237d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12389566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j]))));
1239d4002b98SHong Zhang         } else {
12409566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j])));
1241d4002b98SHong Zhang         }
1242d4002b98SHong Zhang #else
1243835f2295SStefano Zampini         PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1 / a->val[j])));
1244d4002b98SHong Zhang #endif
1245d4002b98SHong Zhang 
1246d4002b98SHong Zhang         /* U part */
124707e43b41SHong Zhang         for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) {
1248d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1249d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
12509566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
1251d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12529566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1253d4002b98SHong Zhang           } else {
12549566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1255d4002b98SHong Zhang           }
1256d4002b98SHong Zhang #else
12579566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1258d4002b98SHong Zhang #endif
1259d4002b98SHong Zhang         }
12609566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1261d4002b98SHong Zhang       }
1262d4002b98SHong Zhang     } else {
1263d4002b98SHong Zhang       for (i = 0; i < m; i++) {
126407e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12659566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1266d4002b98SHong Zhang         for (j = 0; j < a->rlen[i]; j++) {
1267d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1268d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
126907e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1270d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
127107e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1272d4002b98SHong Zhang           } else {
127307e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1274d4002b98SHong Zhang           }
1275d4002b98SHong Zhang #else
127607e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1277d4002b98SHong Zhang #endif
1278d4002b98SHong Zhang         }
12799566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1280d4002b98SHong Zhang       }
1281d4002b98SHong Zhang     }
12829566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1283d4002b98SHong Zhang   }
12849566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
12853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1286d4002b98SHong Zhang }
1287d4002b98SHong Zhang 
1288d4002b98SHong Zhang #include <petscdraw.h>
1289ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa)
1290d71ae5a4SJacob Faibussowitsch {
1291d4002b98SHong Zhang   Mat               A = (Mat)Aa;
1292d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1293d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1294d4002b98SHong Zhang   int               color;
1295d4002b98SHong Zhang   PetscReal         xl, yl, xr, yr, x_l, x_r, y_l, y_r;
1296d4002b98SHong Zhang   PetscViewer       viewer;
1297d4002b98SHong Zhang   PetscViewerFormat format;
1298d4002b98SHong Zhang 
1299d4002b98SHong Zhang   PetscFunctionBegin;
13009566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
13019566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
13029566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
1303d4002b98SHong Zhang 
1304d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1305d4002b98SHong Zhang 
1306d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1307d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1308d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1309d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1310d4002b98SHong Zhang     for (i = 0; i < m; i++) {
131107e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
13129371c9d4SSatish Balay       y_l   = m - i - 1.0;
13139371c9d4SSatish Balay       y_r   = y_l + 1.0;
1314d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
131507e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13169371c9d4SSatish Balay         x_r = x_l + 1.0;
131707e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue;
13189566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1319d4002b98SHong Zhang       }
1320d4002b98SHong Zhang     }
1321d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1322d4002b98SHong Zhang     for (i = 0; i < m; i++) {
132307e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13249371c9d4SSatish Balay       y_l   = m - i - 1.0;
13259371c9d4SSatish Balay       y_r   = y_l + 1.0;
1326d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
132707e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13289371c9d4SSatish Balay         x_r = x_l + 1.0;
132907e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.) continue;
13309566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1331d4002b98SHong Zhang       }
1332d4002b98SHong Zhang     }
1333d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1334d4002b98SHong Zhang     for (i = 0; i < m; i++) {
133507e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13369371c9d4SSatish Balay       y_l   = m - i - 1.0;
13379371c9d4SSatish Balay       y_r   = y_l + 1.0;
1338d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
133907e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13409371c9d4SSatish Balay         x_r = x_l + 1.0;
134107e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue;
13429566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1343d4002b98SHong Zhang       }
1344d4002b98SHong Zhang     }
1345d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1346d4002b98SHong Zhang   } else {
1347d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1348d4002b98SHong Zhang     /* first determine max of all nonzero values */
1349d4002b98SHong Zhang     PetscReal minv = 0.0, maxv = 0.0;
1350d4002b98SHong Zhang     PetscInt  count = 0;
1351d4002b98SHong Zhang     PetscDraw popup;
1352d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1353d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1354d4002b98SHong Zhang     }
1355d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
13569566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
13579566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, minv, maxv));
1358d4002b98SHong Zhang 
1359d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1360d4002b98SHong Zhang     for (i = 0; i < m; i++) {
136107e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1362d4002b98SHong Zhang       y_l   = m - i - 1.0;
1363d4002b98SHong Zhang       y_r   = y_l + 1.0;
1364d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
136507e43b41SHong Zhang         x_l   = a->colidx[shift + a->sliceheight * j];
1366d4002b98SHong Zhang         x_r   = x_l + 1.0;
1367d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv);
13689566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1369d4002b98SHong Zhang         count++;
1370d4002b98SHong Zhang       }
1371d4002b98SHong Zhang     }
1372d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1373d4002b98SHong Zhang   }
13743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1375d4002b98SHong Zhang }
1376d4002b98SHong Zhang 
1377d4002b98SHong Zhang #include <petscdraw.h>
1378ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer)
1379d71ae5a4SJacob Faibussowitsch {
1380d4002b98SHong Zhang   PetscDraw draw;
1381d4002b98SHong Zhang   PetscReal xr, yr, xl, yl, h, w;
1382d4002b98SHong Zhang   PetscBool isnull;
1383d4002b98SHong Zhang 
1384d4002b98SHong Zhang   PetscFunctionBegin;
13859566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13869566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
13873ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1388d4002b98SHong Zhang 
13899371c9d4SSatish Balay   xr = A->cmap->n;
13909371c9d4SSatish Balay   yr = A->rmap->n;
13919371c9d4SSatish Balay   h  = yr / 10.0;
13929371c9d4SSatish Balay   w  = xr / 10.0;
13939371c9d4SSatish Balay   xr += w;
13949371c9d4SSatish Balay   yr += h;
13959371c9d4SSatish Balay   xl = -w;
13969371c9d4SSatish Balay   yl = -h;
13979566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
13989566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
13999566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A));
14009566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
14019566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
14023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1403d4002b98SHong Zhang }
1404d4002b98SHong Zhang 
1405d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer)
1406d71ae5a4SJacob Faibussowitsch {
14079f196a02SMartin Diehl   PetscBool isascii, isbinary, isdraw;
1408d4002b98SHong Zhang 
1409d4002b98SHong Zhang   PetscFunctionBegin;
14109f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
14119566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
14129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
14139f196a02SMartin Diehl   if (isascii) {
14149566063dSJacob Faibussowitsch     PetscCall(MatView_SeqSELL_ASCII(A, viewer));
1415d4002b98SHong Zhang   } else if (isbinary) {
14169566063dSJacob Faibussowitsch     /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */
14171baa6e33SBarry Smith   } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer));
14183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1419d4002b98SHong Zhang }
1420d4002b98SHong Zhang 
1421d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode)
1422d71ae5a4SJacob Faibussowitsch {
1423d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1424d4002b98SHong Zhang   PetscInt     i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k;
1425d4002b98SHong Zhang   MatScalar   *vp;
1426773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
142790d2215bSHong Zhang   PetscInt totalchunks = 0;
142890d2215bSHong Zhang #endif
1429d4002b98SHong Zhang 
1430d4002b98SHong Zhang   PetscFunctionBegin;
14313ba16761SJacob Faibussowitsch   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS);
1432d4002b98SHong Zhang   /* To do: compress out the unused elements */
14339566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqSELL(A));
14349566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz));
14359566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs));
14369566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax));
14372d1451d4SHong Zhang   a->nonzerorowcnt = 0;
1438d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1439d4002b98SHong Zhang   for (i = 0; i < a->totalslices; ++i) {
1440d4002b98SHong Zhang     shift = a->sliidx[i];                                                   /* starting index of the slice */
14418e3a54c0SPierre Jolivet     cp    = PetscSafePointerPlusOffset(a->colidx, shift);                   /* pointer to the column indices of the slice */
14428e3a54c0SPierre Jolivet     vp    = PetscSafePointerPlusOffset(a->val, shift);                      /* pointer to the nonzero values of the slice */
144307e43b41SHong Zhang     for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */
144407e43b41SHong Zhang       row  = a->sliceheight * i + row_in_slice;
1445d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1446d4002b98SHong Zhang       /*
1447d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1448d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1449d4002b98SHong Zhang       */
1450d4002b98SHong Zhang       lastcol = 0;
1451d4002b98SHong Zhang       if (nrow > 0) { /* nonempty row */
14522d1451d4SHong Zhang         a->nonzerorowcnt++;
145307e43b41SHong Zhang         lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */
1454aaa8cc7dSPierre Jolivet       } else if (!row_in_slice) {                                 /* first row of the correct slice is empty */
145507e43b41SHong Zhang         for (j = 1; j < a->sliceheight; j++) {
145607e43b41SHong Zhang           if (a->rlen[a->sliceheight * i + j]) {
1457d4002b98SHong Zhang             lastcol = cp[j];
1458d4002b98SHong Zhang             break;
1459d4002b98SHong Zhang           }
1460d4002b98SHong Zhang         }
1461d4002b98SHong Zhang       } else {
1462d4002b98SHong Zhang         if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */
1463d4002b98SHong Zhang       }
1464d4002b98SHong Zhang 
146507e43b41SHong Zhang       for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) {
146607e43b41SHong Zhang         cp[a->sliceheight * k + row_in_slice] = lastcol;
146707e43b41SHong Zhang         vp[a->sliceheight * k + row_in_slice] = (MatScalar)0;
1468d4002b98SHong Zhang       }
1469d4002b98SHong Zhang     }
1470d4002b98SHong Zhang   }
1471d4002b98SHong Zhang 
1472d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1473d4002b98SHong Zhang   a->reallocs = 0;
1474d4002b98SHong Zhang 
14759566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
1476773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
147790d2215bSHong Zhang   if (!a->chunksize && a->totalslices) {
147890d2215bSHong Zhang     a->chunksize = 64;
147990d2215bSHong Zhang     while (a->chunksize < 1024 && 2 * a->chunksize <= a->sliidx[a->totalslices] / a->totalslices) a->chunksize *= 2;
148090d2215bSHong Zhang     totalchunks = 1 + (a->sliidx[a->totalslices] - 1) / a->chunksize;
148190d2215bSHong Zhang   }
148290d2215bSHong Zhang   if (totalchunks != a->totalchunks) {
148390d2215bSHong Zhang     PetscCall(PetscFree(a->chunk_slice_map));
148490d2215bSHong Zhang     PetscCall(PetscMalloc1(totalchunks, &a->chunk_slice_map));
148590d2215bSHong Zhang     a->totalchunks = totalchunks;
148690d2215bSHong Zhang   }
148790d2215bSHong Zhang   j = 0;
148890d2215bSHong Zhang   for (i = 0; i < totalchunks; i++) {
148990d2215bSHong Zhang     while (a->sliidx[j + 1] <= i * a->chunksize && j < a->totalslices) j++;
149090d2215bSHong Zhang     a->chunk_slice_map[i] = j;
149190d2215bSHong Zhang   }
149290d2215bSHong Zhang #endif
14933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1494d4002b98SHong Zhang }
1495d4002b98SHong Zhang 
1496d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info)
1497d71ae5a4SJacob Faibussowitsch {
1498d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1499d4002b98SHong Zhang 
1500d4002b98SHong Zhang   PetscFunctionBegin;
1501d4002b98SHong Zhang   info->block_size   = 1.0;
15023966268fSBarry Smith   info->nz_allocated = a->maxallocmat;
15033966268fSBarry Smith   info->nz_used      = a->sliidx[a->totalslices]; /* include padding zeros */
15043966268fSBarry Smith   info->nz_unneeded  = (a->maxallocmat - a->sliidx[a->totalslices]);
15053966268fSBarry Smith   info->assemblies   = A->num_ass;
15063966268fSBarry Smith   info->mallocs      = A->info.mallocs;
15074dfa11a4SJacob Faibussowitsch   info->memory       = 0; /* REVIEW ME */
1508d4002b98SHong Zhang   if (A->factortype) {
1509d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1510d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1511d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1512d4002b98SHong Zhang   } else {
1513d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1514d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1515d4002b98SHong Zhang     info->factor_mallocs    = 0;
1516d4002b98SHong Zhang   }
15173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1518d4002b98SHong Zhang }
1519d4002b98SHong Zhang 
1520d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
1521d71ae5a4SJacob Faibussowitsch {
1522d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1523d4002b98SHong Zhang   PetscInt     shift, i, k, l, low, high, t, ii, row, col, nrow;
1524d4002b98SHong Zhang   PetscInt    *cp, nonew = a->nonew, lastcol = -1;
1525d4002b98SHong Zhang   MatScalar   *vp, value;
1526773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15272d1451d4SHong Zhang   PetscBool inserted = PETSC_FALSE;
15284e58db63SHong Zhang   PetscInt  mul      = DEVICE_MEM_ALIGN / a->sliceheight;
15292d1451d4SHong Zhang #endif
1530d4002b98SHong Zhang 
1531d4002b98SHong Zhang   PetscFunctionBegin;
1532d4002b98SHong Zhang   for (k = 0; k < m; k++) { /* loop over added rows */
1533d4002b98SHong Zhang     row = im[k];
1534d4002b98SHong Zhang     if (row < 0) continue;
15356bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
153607e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */
1537d4002b98SHong Zhang     cp    = a->colidx + shift;                                      /* pointer to the row */
1538d4002b98SHong Zhang     vp    = a->val + shift;                                         /* pointer to the row */
1539d4002b98SHong Zhang     nrow  = a->rlen[row];
1540d4002b98SHong Zhang     low   = 0;
1541d4002b98SHong Zhang     high  = nrow;
1542d4002b98SHong Zhang 
1543d4002b98SHong Zhang     for (l = 0; l < n; l++) { /* loop over added columns */
1544d4002b98SHong Zhang       col = in[l];
1545d4002b98SHong Zhang       if (col < 0) continue;
15466bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
1547d4002b98SHong Zhang       if (a->roworiented) {
1548d4002b98SHong Zhang         value = v[l + k * n];
1549d4002b98SHong Zhang       } else {
1550d4002b98SHong Zhang         value = v[k + l * m];
1551d4002b98SHong Zhang       }
1552d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1553d4002b98SHong Zhang 
1554ed73aabaSBarry Smith       /* search in this row for the specified column, i indicates the column to be set */
1555d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1556d4002b98SHong Zhang       else high = nrow;
1557d4002b98SHong Zhang       lastcol = col;
1558d4002b98SHong Zhang       while (high - low > 5) {
1559d4002b98SHong Zhang         t = (low + high) / 2;
156007e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1561d4002b98SHong Zhang         else low = t;
1562d4002b98SHong Zhang       }
1563d4002b98SHong Zhang       for (i = low; i < high; i++) {
156407e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
156507e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
156607e43b41SHong Zhang           if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value;
156707e43b41SHong Zhang           else *(vp + a->sliceheight * i) = value;
1568773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15692d1451d4SHong Zhang           inserted = PETSC_TRUE;
15702d1451d4SHong Zhang #endif
1571d4002b98SHong Zhang           low = i + 1;
1572d4002b98SHong Zhang           goto noinsert;
1573d4002b98SHong Zhang         }
1574d4002b98SHong Zhang       }
1575d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1576d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
157708401ef6SPierre Jolivet       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
1578773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15794e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, mul);
15804e58db63SHong Zhang #else
1581d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
15824e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, 1);
15834e58db63SHong Zhang #endif
1584d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1585d4002b98SHong Zhang       for (ii = nrow - 1; ii >= i; ii--) {
158607e43b41SHong Zhang         *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii);
158707e43b41SHong Zhang         *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii);
1588d4002b98SHong Zhang       }
1589d4002b98SHong Zhang       a->rlen[row]++;
159007e43b41SHong Zhang       *(cp + a->sliceheight * i) = col;
159107e43b41SHong Zhang       *(vp + a->sliceheight * i) = value;
1592d4002b98SHong Zhang       a->nz++;
1593773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15942d1451d4SHong Zhang       inserted = PETSC_TRUE;
15952d1451d4SHong Zhang #endif
15969371c9d4SSatish Balay       low = i + 1;
15979371c9d4SSatish Balay       high++;
15989371c9d4SSatish Balay       nrow++;
1599d4002b98SHong Zhang     noinsert:;
1600d4002b98SHong Zhang     }
1601d4002b98SHong Zhang     a->rlen[row] = nrow;
1602d4002b98SHong Zhang   }
1603773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16042d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU;
16052d1451d4SHong Zhang #endif
16063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1607d4002b98SHong Zhang }
1608d4002b98SHong Zhang 
1609d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str)
1610d71ae5a4SJacob Faibussowitsch {
1611d4002b98SHong Zhang   PetscFunctionBegin;
1612d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1613d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1614d4002b98SHong Zhang     Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1615d4002b98SHong Zhang     Mat_SeqSELL *b = (Mat_SeqSELL *)B->data;
1616d4002b98SHong Zhang 
161708401ef6SPierre Jolivet     PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
16189566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices]));
1619d4002b98SHong Zhang   } else {
16209566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
1621d4002b98SHong Zhang   }
16223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1623d4002b98SHong Zhang }
1624d4002b98SHong Zhang 
1625d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A)
1626d71ae5a4SJacob Faibussowitsch {
1627d4002b98SHong Zhang   PetscFunctionBegin;
16289566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL));
16293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1630d4002b98SHong Zhang }
1631d4002b98SHong Zhang 
1632d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[])
1633d71ae5a4SJacob Faibussowitsch {
1634d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1635d4002b98SHong Zhang 
1636d4002b98SHong Zhang   PetscFunctionBegin;
1637d4002b98SHong Zhang   *array = a->val;
16383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1639d4002b98SHong Zhang }
1640d4002b98SHong Zhang 
1641d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[])
1642d71ae5a4SJacob Faibussowitsch {
1643d4002b98SHong Zhang   PetscFunctionBegin;
16443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1645d4002b98SHong Zhang }
1646d4002b98SHong Zhang 
1647d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha)
1648d71ae5a4SJacob Faibussowitsch {
1649d4002b98SHong Zhang   Mat_SeqSELL *a      = (Mat_SeqSELL *)inA->data;
1650d4002b98SHong Zhang   MatScalar   *aval   = a->val;
1651d4002b98SHong Zhang   PetscScalar  oalpha = alpha;
1652d4002b98SHong Zhang   PetscBLASInt one    = 1, size;
1653d4002b98SHong Zhang 
1654d4002b98SHong Zhang   PetscFunctionBegin;
16559566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size));
1656792fecdfSBarry Smith   PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one));
16579566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(a->nz));
16589566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(inA));
1659773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16602d1451d4SHong Zhang   if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU;
16612d1451d4SHong Zhang #endif
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663d4002b98SHong Zhang }
1664d4002b98SHong Zhang 
1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a)
1666d71ae5a4SJacob Faibussowitsch {
1667d4002b98SHong Zhang   Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data;
1668d4002b98SHong Zhang 
1669d4002b98SHong Zhang   PetscFunctionBegin;
167048a46eb9SPierre Jolivet   if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL));
16719566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
16723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1673d4002b98SHong Zhang }
1674d4002b98SHong Zhang 
1675d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1676d71ae5a4SJacob Faibussowitsch {
1677d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
1678d4002b98SHong Zhang   PetscScalar       *x, sum, *t;
1679f4259b30SLisandro Dalcin   const MatScalar   *idiag = NULL, *mdiag;
1680d4002b98SHong Zhang   const PetscScalar *b, *xb;
1681d4002b98SHong Zhang   PetscInt           n, m = A->rmap->n, i, j, shift;
1682d4002b98SHong Zhang   const PetscInt    *diag;
1683d4002b98SHong Zhang 
1684d4002b98SHong Zhang   PetscFunctionBegin;
1685d4002b98SHong Zhang   its = its * lits;
1686d4002b98SHong Zhang 
1687d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
16889566063dSJacob Faibussowitsch   if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A, omega, fshift));
1689d4002b98SHong Zhang   a->fshift = fshift;
1690d4002b98SHong Zhang   a->omega  = omega;
1691d4002b98SHong Zhang 
1692d4002b98SHong Zhang   diag  = a->diag;
1693d4002b98SHong Zhang   t     = a->ssor_work;
1694d4002b98SHong Zhang   idiag = a->idiag;
1695d4002b98SHong Zhang   mdiag = a->mdiag;
1696d4002b98SHong Zhang 
16979566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx, &x));
16989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb, &b));
1699d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
170008401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented");
170108401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented");
1702aed4548fSBarry Smith   PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat");
1703d4002b98SHong Zhang 
1704d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1705d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1706d4002b98SHong Zhang       for (i = 0; i < m; i++) {
170707e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1708d4002b98SHong Zhang         sum   = b[i];
170907e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
171007e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1711d4002b98SHong Zhang         t[i] = sum;
1712d4002b98SHong Zhang         x[i] = sum * idiag[i];
1713d4002b98SHong Zhang       }
1714d4002b98SHong Zhang       xb = t;
17159566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz));
1716d4002b98SHong Zhang     } else xb = b;
1717d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1718d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
171907e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1720d4002b98SHong Zhang         sum   = xb[i];
172107e43b41SHong Zhang         n     = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
172207e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1723d4002b98SHong Zhang         if (xb == b) {
1724d4002b98SHong Zhang           x[i] = sum * idiag[i];
1725d4002b98SHong Zhang         } else {
1726d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1727d4002b98SHong Zhang         }
1728d4002b98SHong Zhang       }
17299566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1730d4002b98SHong Zhang     }
1731d4002b98SHong Zhang     its--;
1732d4002b98SHong Zhang   }
1733d4002b98SHong Zhang   while (its--) {
1734d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1735d4002b98SHong Zhang       for (i = 0; i < m; i++) {
1736d4002b98SHong Zhang         /* lower */
173707e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1738d4002b98SHong Zhang         sum   = b[i];
173907e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
174007e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1741d4002b98SHong Zhang         t[i] = sum; /* save application of the lower-triangular part */
1742d4002b98SHong Zhang         /* upper */
174307e43b41SHong Zhang         n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
174407e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1745d4002b98SHong Zhang         x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1746d4002b98SHong Zhang       }
1747d4002b98SHong Zhang       xb = t;
17489566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * a->nz));
1749d4002b98SHong Zhang     } else xb = b;
1750d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1751d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
175207e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1753d4002b98SHong Zhang         sum   = xb[i];
1754d4002b98SHong Zhang         if (xb == b) {
1755d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1756d4002b98SHong Zhang           n = a->rlen[i];
175707e43b41SHong Zhang           for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1758d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i];
1759d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
176007e43b41SHong Zhang           n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
176107e43b41SHong Zhang           for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1762d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1763d4002b98SHong Zhang         }
1764d4002b98SHong Zhang       }
1765d4002b98SHong Zhang       if (xb == b) {
17669566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * a->nz));
1767d4002b98SHong Zhang       } else {
17689566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1769d4002b98SHong Zhang       }
1770d4002b98SHong Zhang     }
1771d4002b98SHong Zhang   }
17729566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx, &x));
17739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb, &b));
17743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1775d4002b98SHong Zhang }
1776d4002b98SHong Zhang 
1777d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17786108893eSStefano Zampini                                        MatGetRow_SeqSELL,
17796108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1780d4002b98SHong Zhang                                        MatMult_SeqSELL,
1781d4002b98SHong Zhang                                        /* 4*/ MatMultAdd_SeqSELL,
1782d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1783d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1784f4259b30SLisandro Dalcin                                        NULL,
1785f4259b30SLisandro Dalcin                                        NULL,
1786f4259b30SLisandro Dalcin                                        NULL,
1787f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1788f4259b30SLisandro Dalcin                                        NULL,
1789f4259b30SLisandro Dalcin                                        NULL,
1790d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1791f4259b30SLisandro Dalcin                                        NULL,
1792d4002b98SHong Zhang                                        /* 15*/ MatGetInfo_SeqSELL,
1793d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1794d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1795d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        /* 20*/ NULL,
1798d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1799d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1800d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1801f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1802f4259b30SLisandro Dalcin                                        NULL,
1803f4259b30SLisandro Dalcin                                        NULL,
1804f4259b30SLisandro Dalcin                                        NULL,
1805f4259b30SLisandro Dalcin                                        NULL,
1806d4002b98SHong Zhang                                        /* 29*/ MatSetUp_SeqSELL,
1807f4259b30SLisandro Dalcin                                        NULL,
1808f4259b30SLisandro Dalcin                                        NULL,
1809f4259b30SLisandro Dalcin                                        NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811d4002b98SHong Zhang                                        /* 34*/ MatDuplicate_SeqSELL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814f4259b30SLisandro Dalcin                                        NULL,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        /* 39*/ NULL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1820d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1821f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1822d4002b98SHong Zhang                                        MatScale_SeqSELL,
1823d4002b98SHong Zhang                                        MatShift_SeqSELL,
1824f4259b30SLisandro Dalcin                                        NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1827f4259b30SLisandro Dalcin                                        NULL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831d4002b98SHong Zhang                                        /* 54*/ MatFDColoringCreate_SeqXAIJ,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        /* 59*/ NULL,
1837d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1838d4002b98SHong Zhang                                        MatView_SeqSELL,
1839f4259b30SLisandro Dalcin                                        NULL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844f4259b30SLisandro Dalcin                                        NULL,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        /* 69*/ NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
18498bb0f5c6SPierre Jolivet                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
18528bb0f5c6SPierre Jolivet                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
1860f4259b30SLisandro Dalcin                                        NULL,
1861f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
18708bb0f5c6SPierre Jolivet                                        MatConjugate_SeqSELL,
1871f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
18808bb0f5c6SPierre Jolivet                                        NULL,
18818bb0f5c6SPierre Jolivet                                        /*104*/ MatMissingDiagonal_SeqSELL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
18908bb0f5c6SPierre Jolivet                                        NULL,
1891f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
19068bb0f5c6SPierre Jolivet                                        /*129*/ MatFDColoringSetUp_SeqXAIJ,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
1913f4259b30SLisandro Dalcin                                        NULL,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        /*139*/ NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
191903db1824SAlex Lindsay                                        NULL,
1920dec0b466SHong Zhang                                        NULL};
1921d4002b98SHong Zhang 
1922ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1923d71ae5a4SJacob Faibussowitsch {
1924d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1925d4002b98SHong Zhang 
1926d4002b98SHong Zhang   PetscFunctionBegin;
192728b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1928d4002b98SHong Zhang 
1929d4002b98SHong Zhang   /* allocate space for values if not already there */
1930aa624791SPierre Jolivet   if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values));
1931d4002b98SHong Zhang 
1932d4002b98SHong Zhang   /* copy values over */
19339566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices]));
19343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1935d4002b98SHong Zhang }
1936d4002b98SHong Zhang 
1937ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1938d71ae5a4SJacob Faibussowitsch {
1939d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1940d4002b98SHong Zhang 
1941d4002b98SHong Zhang   PetscFunctionBegin;
194228b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
194328b400f6SJacob Faibussowitsch   PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");
19449566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices]));
19453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1946d4002b98SHong Zhang }
1947d4002b98SHong Zhang 
1948ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio)
194907e43b41SHong Zhang {
195007e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
195107e43b41SHong Zhang 
195207e43b41SHong Zhang   PetscFunctionBegin;
195307e43b41SHong Zhang   if (a->totalslices && a->sliidx[a->totalslices]) {
195407e43b41SHong Zhang     *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices];
195507e43b41SHong Zhang   } else {
195607e43b41SHong Zhang     *ratio = 0.0;
195707e43b41SHong Zhang   }
195807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
195907e43b41SHong Zhang }
196007e43b41SHong Zhang 
1961ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth)
196207e43b41SHong Zhang {
196307e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
196407e43b41SHong Zhang   PetscInt     i, current_slicewidth;
196507e43b41SHong Zhang 
196607e43b41SHong Zhang   PetscFunctionBegin;
196707e43b41SHong Zhang   *slicewidth = 0;
196807e43b41SHong Zhang   for (i = 0; i < a->totalslices; i++) {
196907e43b41SHong Zhang     current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight;
197007e43b41SHong Zhang     if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth;
197107e43b41SHong Zhang   }
197207e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
197307e43b41SHong Zhang }
197407e43b41SHong Zhang 
1975ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth)
197607e43b41SHong Zhang {
197707e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
197807e43b41SHong Zhang 
197907e43b41SHong Zhang   PetscFunctionBegin;
198007e43b41SHong Zhang   *slicewidth = 0;
198107e43b41SHong Zhang   if (a->totalslices) { *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices; }
198207e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
198307e43b41SHong Zhang }
198407e43b41SHong Zhang 
1985ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetVarSliceSize_SeqSELL(Mat mat, PetscReal *variance)
1986b921024eSHong Zhang {
1987b921024eSHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1988b921024eSHong Zhang   PetscReal    mean;
1989b921024eSHong Zhang   PetscInt     i, totalslices = a->totalslices, *sliidx = a->sliidx;
1990b921024eSHong Zhang 
1991b921024eSHong Zhang   PetscFunctionBegin;
1992b921024eSHong Zhang   *variance = 0;
1993b921024eSHong Zhang   if (totalslices) {
1994b921024eSHong Zhang     mean = (PetscReal)sliidx[totalslices] / totalslices;
1995b921024eSHong Zhang     for (i = 1; i <= totalslices; i++) { *variance += ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) * ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) / totalslices; }
1996b921024eSHong Zhang   }
1997b921024eSHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
1998b921024eSHong Zhang }
1999b921024eSHong Zhang 
2000ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight)
200107e43b41SHong Zhang {
200207e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
200307e43b41SHong Zhang 
200407e43b41SHong Zhang   PetscFunctionBegin;
200507e43b41SHong Zhang   if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS);
200607e43b41SHong Zhang   PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight);
200707e43b41SHong Zhang   a->sliceheight = sliceheight;
2008773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
2009773bf0f6SHong Zhang   PetscCheck(PetscMax(DEVICE_MEM_ALIGN, sliceheight) % PetscMin(DEVICE_MEM_ALIGN, sliceheight) == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "The slice height is not compatible with DEVICE_MEM_ALIGN (one must be divisible by the other) %" PetscInt_FMT, sliceheight);
20104e58db63SHong Zhang #endif
201107e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
201207e43b41SHong Zhang }
201307e43b41SHong Zhang 
2014cc4c1da9SBarry Smith /*@
201507e43b41SHong Zhang   MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix.
201607e43b41SHong Zhang 
201707e43b41SHong Zhang   Not Collective
201807e43b41SHong Zhang 
201907e43b41SHong Zhang   Input Parameter:
202007e43b41SHong Zhang . A - a MATSEQSELL matrix
202107e43b41SHong Zhang 
202207e43b41SHong Zhang   Output Parameter:
202307e43b41SHong Zhang . ratio - ratio of number of padded zeros to number of allocated elements
202407e43b41SHong Zhang 
202507e43b41SHong Zhang   Level: intermediate
20262920cce0SJacob Faibussowitsch 
20272920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()`
202807e43b41SHong Zhang @*/
202907e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio)
203007e43b41SHong Zhang {
203107e43b41SHong Zhang   PetscFunctionBegin;
203207e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio));
203307e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
203407e43b41SHong Zhang }
203507e43b41SHong Zhang 
2036cc4c1da9SBarry Smith /*@
203707e43b41SHong Zhang   MatSeqSELLGetMaxSliceWidth - returns the maximum slice width.
203807e43b41SHong Zhang 
203907e43b41SHong Zhang   Not Collective
204007e43b41SHong Zhang 
204107e43b41SHong Zhang   Input Parameter:
204207e43b41SHong Zhang . A - a MATSEQSELL matrix
204307e43b41SHong Zhang 
204407e43b41SHong Zhang   Output Parameter:
204507e43b41SHong Zhang . slicewidth - maximum slice width
204607e43b41SHong Zhang 
204707e43b41SHong Zhang   Level: intermediate
20482920cce0SJacob Faibussowitsch 
20492920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()`
205007e43b41SHong Zhang @*/
205107e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth)
205207e43b41SHong Zhang {
205307e43b41SHong Zhang   PetscFunctionBegin;
205407e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth));
205507e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
205607e43b41SHong Zhang }
205707e43b41SHong Zhang 
2058cc4c1da9SBarry Smith /*@
205907e43b41SHong Zhang   MatSeqSELLGetAvgSliceWidth - returns the average slice width.
206007e43b41SHong Zhang 
206107e43b41SHong Zhang   Not Collective
206207e43b41SHong Zhang 
206307e43b41SHong Zhang   Input Parameter:
206407e43b41SHong Zhang . A - a MATSEQSELL matrix
206507e43b41SHong Zhang 
206607e43b41SHong Zhang   Output Parameter:
206707e43b41SHong Zhang . slicewidth - average slice width
206807e43b41SHong Zhang 
206907e43b41SHong Zhang   Level: intermediate
20702920cce0SJacob Faibussowitsch 
20712920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetMaxSliceWidth()`
207207e43b41SHong Zhang @*/
207307e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth)
207407e43b41SHong Zhang {
207507e43b41SHong Zhang   PetscFunctionBegin;
207607e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth));
207707e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
207807e43b41SHong Zhang }
207907e43b41SHong Zhang 
2080cc4c1da9SBarry Smith /*@
208107e43b41SHong Zhang   MatSeqSELLSetSliceHeight - sets the slice height.
208207e43b41SHong Zhang 
208307e43b41SHong Zhang   Not Collective
208407e43b41SHong Zhang 
208507e43b41SHong Zhang   Input Parameters:
208607e43b41SHong Zhang + A           - a MATSEQSELL matrix
208707e43b41SHong Zhang - sliceheight - slice height
208807e43b41SHong Zhang 
208907e43b41SHong Zhang   Notes:
209007e43b41SHong Zhang   You cannot change the slice height once it have been set.
209107e43b41SHong Zhang 
209207e43b41SHong Zhang   The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called.
209307e43b41SHong Zhang 
209407e43b41SHong Zhang   Level: intermediate
20952920cce0SJacob Faibussowitsch 
20962920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetVarSliceSize()`
209707e43b41SHong Zhang @*/
209807e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight)
209907e43b41SHong Zhang {
210007e43b41SHong Zhang   PetscFunctionBegin;
210107e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight));
210207e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
210307e43b41SHong Zhang }
210407e43b41SHong Zhang 
2105cc4c1da9SBarry Smith /*@
210607e43b41SHong Zhang   MatSeqSELLGetVarSliceSize - returns the variance of the slice size.
210707e43b41SHong Zhang 
210807e43b41SHong Zhang   Not Collective
210907e43b41SHong Zhang 
211007e43b41SHong Zhang   Input Parameter:
211107e43b41SHong Zhang . A - a MATSEQSELL matrix
211207e43b41SHong Zhang 
211307e43b41SHong Zhang   Output Parameter:
211407e43b41SHong Zhang . variance - variance of the slice size
211507e43b41SHong Zhang 
211607e43b41SHong Zhang   Level: intermediate
21172920cce0SJacob Faibussowitsch 
21182920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLSetSliceHeight()`
211907e43b41SHong Zhang @*/
212007e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance)
212107e43b41SHong Zhang {
212207e43b41SHong Zhang   PetscFunctionBegin;
212307e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance));
212407e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
212507e43b41SHong Zhang }
212607e43b41SHong Zhang 
21272d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
21282d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat);
21292d1451d4SHong Zhang #endif
2130773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
2131773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLHIP(Mat);
2132773bf0f6SHong Zhang #endif
21332d1451d4SHong Zhang 
2134d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
2135d71ae5a4SJacob Faibussowitsch {
2136d4002b98SHong Zhang   Mat_SeqSELL *b;
2137d4002b98SHong Zhang   PetscMPIInt  size;
2138d4002b98SHong Zhang 
2139d4002b98SHong Zhang   PetscFunctionBegin;
21409566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(citation, &cited));
21419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
214208401ef6SPierre Jolivet   PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1");
2143d4002b98SHong Zhang 
21444dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2145d4002b98SHong Zhang 
2146d4002b98SHong Zhang   B->data   = (void *)b;
2147aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2148d4002b98SHong Zhang 
2149f4259b30SLisandro Dalcin   b->row                = NULL;
2150f4259b30SLisandro Dalcin   b->col                = NULL;
2151f4259b30SLisandro Dalcin   b->icol               = NULL;
2152d4002b98SHong Zhang   b->reallocs           = 0;
2153d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
2154d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
2155d4002b98SHong Zhang   b->nonew              = 0;
2156f4259b30SLisandro Dalcin   b->diag               = NULL;
2157f4259b30SLisandro Dalcin   b->solve_work         = NULL;
2158f4259b30SLisandro Dalcin   B->spptr              = NULL;
2159f4259b30SLisandro Dalcin   b->saved_values       = NULL;
2160f4259b30SLisandro Dalcin   b->idiag              = NULL;
2161f4259b30SLisandro Dalcin   b->mdiag              = NULL;
2162f4259b30SLisandro Dalcin   b->ssor_work          = NULL;
2163d4002b98SHong Zhang   b->omega              = 1.0;
2164d4002b98SHong Zhang   b->fshift             = 0.0;
2165d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
2166d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
216707e43b41SHong Zhang   b->sliceheight        = 0;
2168d4002b98SHong Zhang 
21699566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL));
21709566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL));
21719566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL));
21729566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL));
21739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL));
21749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL));
2175b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqaij_C", MatConvert_SeqSELL_SeqAIJ));
21762d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
2177b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellcuda_C", MatConvert_SeqSELL_SeqSELLCUDA));
21782d1451d4SHong Zhang #endif
2179773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
2180773bf0f6SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellhip_C", MatConvert_SeqSELL_SeqSELLHIP));
2181773bf0f6SHong Zhang #endif
218207e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL));
218307e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL));
218407e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL));
2185b921024eSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetVarSliceSize_C", MatSeqSELLGetVarSliceSize_SeqSELL));
218607e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL));
218707e43b41SHong Zhang 
218807e43b41SHong Zhang   PetscObjectOptionsBegin((PetscObject)B);
218907e43b41SHong Zhang   {
219007e43b41SHong Zhang     PetscInt  newsh = -1;
219107e43b41SHong Zhang     PetscBool flg;
2192773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
219390d2215bSHong Zhang     PetscInt chunksize = 0;
219490d2215bSHong Zhang #endif
219507e43b41SHong Zhang 
219607e43b41SHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg));
2197*3a7d0413SPierre Jolivet     if (flg) PetscCall(MatSeqSELLSetSliceHeight(B, newsh));
2198773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
2199773bf0f6SHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_chunk_size", "Set the chunksize for load-balanced CUDA/HIP kernels. Choices include 64,128,256,512,1024", NULL, chunksize, &chunksize, &flg));
220090d2215bSHong Zhang     if (flg) {
220190d2215bSHong Zhang       PetscCheck(chunksize >= 64 && chunksize <= 1024 && chunksize % 64 == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "chunksize must be a number in {64,128,256,512,1024}: value %" PetscInt_FMT, chunksize);
220290d2215bSHong Zhang       b->chunksize = chunksize;
220390d2215bSHong Zhang     }
220490d2215bSHong Zhang #endif
220507e43b41SHong Zhang   }
220607e43b41SHong Zhang   PetscOptionsEnd();
22073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2208d4002b98SHong Zhang }
2209d4002b98SHong Zhang 
2210d4002b98SHong Zhang /*
2211d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
2212d4002b98SHong Zhang  */
2213ba38deedSJacob Faibussowitsch static PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace)
2214d71ae5a4SJacob Faibussowitsch {
2215ed73aabaSBarry Smith   Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data;
2216d4002b98SHong Zhang   PetscInt     i, m                           = A->rmap->n;
2217d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2218d4002b98SHong Zhang 
2219d4002b98SHong Zhang   PetscFunctionBegin;
2220d4002b98SHong Zhang   C->factortype = A->factortype;
2221f4259b30SLisandro Dalcin   c->row        = NULL;
2222f4259b30SLisandro Dalcin   c->col        = NULL;
2223f4259b30SLisandro Dalcin   c->icol       = NULL;
2224d4002b98SHong Zhang   c->reallocs   = 0;
2225d4002b98SHong Zhang   C->assembled  = PETSC_TRUE;
2226d4002b98SHong Zhang 
22279566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
22289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
2229d4002b98SHong Zhang 
2230773bf0f6SHong Zhang   c->sliceheight = a->sliceheight;
2231773bf0f6SHong Zhang   PetscCall(PetscMalloc1(c->sliceheight * totalslices, &c->rlen));
22329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx));
2233d4002b98SHong Zhang 
2234d4002b98SHong Zhang   for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i];
2235d4002b98SHong Zhang   for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i];
2236d4002b98SHong Zhang 
2237d4002b98SHong Zhang   /* allocate the matrix space */
2238d4002b98SHong Zhang   if (mallocmatspace) {
22399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx));
2240d4002b98SHong Zhang 
2241d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2242d4002b98SHong Zhang 
2243d4002b98SHong Zhang     if (m > 0) {
22449566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat));
2245d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
22469566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat));
2247d4002b98SHong Zhang       } else {
22489566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(c->val, a->maxallocmat));
2249d4002b98SHong Zhang       }
2250d4002b98SHong Zhang     }
2251d4002b98SHong Zhang   }
2252d4002b98SHong Zhang 
2253d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
2254d4002b98SHong Zhang   c->roworiented       = a->roworiented;
2255d4002b98SHong Zhang   c->nonew             = a->nonew;
2256d4002b98SHong Zhang   if (a->diag) {
22579566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &c->diag));
2258ad540459SPierre Jolivet     for (i = 0; i < m; i++) c->diag[i] = a->diag[i];
2259f4259b30SLisandro Dalcin   } else c->diag = NULL;
2260d4002b98SHong Zhang 
2261f4259b30SLisandro Dalcin   c->solve_work         = NULL;
2262f4259b30SLisandro Dalcin   c->saved_values       = NULL;
2263f4259b30SLisandro Dalcin   c->idiag              = NULL;
2264f4259b30SLisandro Dalcin   c->ssor_work          = NULL;
2265d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2266d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2267d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2268d4002b98SHong Zhang 
2269d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2270d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2271d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2272d4002b98SHong Zhang   c->nz           = a->nz;
2273d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2274d4002b98SHong Zhang 
2275d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2276d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2277d4002b98SHong Zhang 
22789566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
22793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2280d4002b98SHong Zhang }
2281d4002b98SHong Zhang 
2282d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B)
2283d71ae5a4SJacob Faibussowitsch {
2284d4002b98SHong Zhang   PetscFunctionBegin;
22859566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
22869566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
228748a46eb9SPierre Jolivet   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A));
22889566063dSJacob Faibussowitsch   PetscCall(MatSetType(*B, ((PetscObject)A)->type_name));
22899566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE));
22903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2291d4002b98SHong Zhang }
2292d4002b98SHong Zhang 
2293ed73aabaSBarry Smith /*MC
2294ed73aabaSBarry Smith    MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices,
22951d27aa22SBarry Smith    based on the sliced Ellpack format, {cite}`zhangellpack2018`
2296ed73aabaSBarry Smith 
229720f4b53cSBarry Smith    Options Database Key:
229811a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()`
2299ed73aabaSBarry Smith 
2300ed73aabaSBarry Smith    Level: beginner
2301ed73aabaSBarry Smith 
230294764886SPierre Jolivet .seealso: `Mat`, `MatCreateSeqSELL()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
2303ed73aabaSBarry Smith M*/
2304ed73aabaSBarry Smith 
2305ed73aabaSBarry Smith /*MC
23061d27aa22SBarry Smith    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices, {cite}`zhangellpack2018`
2307ed73aabaSBarry Smith 
230811a5261eSBarry Smith    This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator,
230911a5261eSBarry Smith    and `MATMPISELL` otherwise.  As a result, for single process communicators,
231011a5261eSBarry Smith   `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported
2311ed73aabaSBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
2312ed73aabaSBarry Smith   the above preallocation routines for simplicity.
2313ed73aabaSBarry Smith 
231420f4b53cSBarry Smith    Options Database Key:
2315ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
2316ed73aabaSBarry Smith 
2317ed73aabaSBarry Smith   Level: beginner
2318ed73aabaSBarry Smith 
2319ed73aabaSBarry Smith   Notes:
23207de69702SBarry Smith   This format is only supported for real scalars, double precision, and 32-bit indices (the defaults).
2321ed73aabaSBarry Smith 
2322ed73aabaSBarry Smith   It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of
2323ed73aabaSBarry Smith   non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement.
2324ed73aabaSBarry Smith 
2325ed73aabaSBarry Smith   Developer Notes:
2326ed73aabaSBarry Smith   On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance.
2327ed73aabaSBarry Smith 
2328ed73aabaSBarry Smith   The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8
2329ed73aabaSBarry Smith .vb
2330ed73aabaSBarry Smith                             (2 0  3 4)
2331ed73aabaSBarry Smith    Consider the matrix A =  (5 0  6 0)
2332ed73aabaSBarry Smith                             (0 0  7 8)
2333ed73aabaSBarry Smith                             (0 0  9 9)
2334ed73aabaSBarry Smith 
2335ed73aabaSBarry Smith    symbolically the Ellpack format can be written as
2336ed73aabaSBarry Smith 
2337ed73aabaSBarry Smith         (2 3 4 |)           (0 2 3 |)
2338ed73aabaSBarry Smith    v =  (5 6 0 |)  colidx = (0 2 2 |)
2339ed73aabaSBarry Smith         --------            ---------
2340ed73aabaSBarry Smith         (7 8 |)             (2 3 |)
2341ed73aabaSBarry Smith         (9 9 |)             (2 3 |)
2342ed73aabaSBarry Smith 
2343ed73aabaSBarry Smith     The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case).
2344ed73aabaSBarry Smith     Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and
2345ed73aabaSBarry Smith     zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice.
2346ed73aabaSBarry Smith 
2347ed73aabaSBarry Smith     The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9)  and for colidx is (0 0 2 2 3 2 2 2 3 3)
2348ed73aabaSBarry Smith 
2349ed73aabaSBarry Smith .ve
2350ed73aabaSBarry Smith 
23511d27aa22SBarry Smith     See `MatMult_SeqSELL()` for how this format is used with the SIMD operations to achieve high performance.
2352ed73aabaSBarry Smith 
235394764886SPierre Jolivet .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSELL()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
2354ed73aabaSBarry Smith M*/
2355ed73aabaSBarry Smith 
23565d83a8b1SBarry Smith /*@
235711a5261eSBarry Smith   MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format.
2358d4002b98SHong Zhang 
23592ef1f0ffSBarry Smith   Collective
2360d4002b98SHong Zhang 
2361d4002b98SHong Zhang   Input Parameters:
236211a5261eSBarry Smith + comm    - MPI communicator, set to `PETSC_COMM_SELF`
2363d4002b98SHong Zhang . m       - number of rows
2364d4002b98SHong Zhang . n       - number of columns
236520f4b53cSBarry Smith . rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided
236620f4b53cSBarry Smith - rlen    - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL
2367d4002b98SHong Zhang 
2368d4002b98SHong Zhang   Output Parameter:
2369d4002b98SHong Zhang . A - the matrix
2370d4002b98SHong Zhang 
237120f4b53cSBarry Smith   Level: intermediate
237220f4b53cSBarry Smith 
237320f4b53cSBarry Smith   Notes:
237411a5261eSBarry Smith   It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2375f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
237611a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`]
2377d4002b98SHong Zhang 
237820f4b53cSBarry Smith   Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
237920f4b53cSBarry Smith   Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
238020f4b53cSBarry Smith   allocation.
2381d4002b98SHong Zhang 
2382fe59aa6dSJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATMPISELL`
2383d4002b98SHong Zhang  @*/
238420f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A)
2385d71ae5a4SJacob Faibussowitsch {
2386d4002b98SHong Zhang   PetscFunctionBegin;
23879566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
23889566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, m, n));
23899566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A, MATSEQSELL));
239020f4b53cSBarry Smith   PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen));
23913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2392d4002b98SHong Zhang }
2393d4002b98SHong Zhang 
2394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg)
2395d71ae5a4SJacob Faibussowitsch {
2396d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data;
2397d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2398d4002b98SHong Zhang 
2399d4002b98SHong Zhang   PetscFunctionBegin;
2400d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2401d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2402d4002b98SHong Zhang     *flg = PETSC_FALSE;
24033ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2404d4002b98SHong Zhang   }
2405d4002b98SHong Zhang   /* if the a->colidx are the same */
24069566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg));
24073ba16761SJacob Faibussowitsch   if (!*flg) PetscFunctionReturn(PETSC_SUCCESS);
2408d4002b98SHong Zhang   /* if a->val are the same */
24099566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg));
24103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2411d4002b98SHong Zhang }
2412d4002b98SHong Zhang 
2413d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2414d71ae5a4SJacob Faibussowitsch {
2415d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2416d4002b98SHong Zhang 
2417d4002b98SHong Zhang   PetscFunctionBegin;
2418d4002b98SHong Zhang   a->idiagvalid = PETSC_FALSE;
24193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2420d4002b98SHong Zhang }
2421d4002b98SHong Zhang 
2422d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A)
2423d71ae5a4SJacob Faibussowitsch {
2424d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2425d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2426d4002b98SHong Zhang   PetscInt     i;
2427d4002b98SHong Zhang   PetscScalar *val = a->val;
2428d4002b98SHong Zhang 
2429d4002b98SHong Zhang   PetscFunctionBegin;
24302d1451d4SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) { val[i] = PetscConj(val[i]); }
2431773bf0f6SHong Zhang   #if defined(PETSC_HAVE_CUPM)
24322d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
24332d1451d4SHong Zhang   #endif
2434d4002b98SHong Zhang #else
2435d4002b98SHong Zhang   PetscFunctionBegin;
2436d4002b98SHong Zhang #endif
24373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2438d4002b98SHong Zhang }
2439