xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 4e58db63d9a16e1e6d7a6b59b385108b2e578961)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
8ed73aabaSBarry Smith 
9ed73aabaSBarry Smith static PetscBool  cited      = PETSC_FALSE;
109371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n"
11ed73aabaSBarry Smith                                " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n"
12ed73aabaSBarry Smith                                " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n"
13ed73aabaSBarry Smith                                " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n"
14ed73aabaSBarry Smith                                " year = 2018\n"
15ed73aabaSBarry Smith                                "}\n";
16ed73aabaSBarry Smith 
175f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
184243e2ceSHong Zhang 
19d4002b98SHong Zhang   #include <immintrin.h>
20d4002b98SHong Zhang 
21d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
22d4002b98SHong Zhang     #define _MM_SCALE_8 8
23d4002b98SHong Zhang   #endif
24d4002b98SHong Zhang 
25d4002b98SHong Zhang   #if defined(__AVX512F__)
26d4002b98SHong Zhang     /* these do not work
27d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
28d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
29d4002b98SHong Zhang   */
30d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
31d4002b98SHong Zhang       /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
32ef588d5cSRichard Tran Mills       vec_idx  = _mm256_loadu_si256((__m256i const *)acolidx); \
33ef588d5cSRichard Tran Mills       vec_vals = _mm512_loadu_pd(aval); \
34d4002b98SHong Zhang       vec_x    = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \
35a48a6482SHong Zhang       vec_y    = _mm512_fmadd_pd(vec_x, vec_vals, vec_y)
365f70456aSHong Zhang   #elif defined(__AVX2__) && defined(__FMA__)
37a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
38ef588d5cSRichard Tran Mills       vec_vals = _mm256_loadu_pd(aval); \
39ef588d5cSRichard Tran Mills       vec_idx  = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \
40a48a6482SHong Zhang       vec_x    = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \
41a48a6482SHong Zhang       vec_y    = _mm256_fmadd_pd(vec_x, vec_vals, vec_y)
42d4002b98SHong Zhang   #endif
43d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */
44d4002b98SHong Zhang 
45d4002b98SHong Zhang /*@C
46d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
4720f4b53cSBarry Smith  the user should preallocate the matrix storage by setting the parameter `nz`
4820f4b53cSBarry Smith  (or the array `nnz`).
49d4002b98SHong Zhang 
50d083f849SBarry Smith  Collective
51d4002b98SHong Zhang 
52d4002b98SHong Zhang  Input Parameters:
5311a5261eSBarry Smith +  B - The `MATSEQSELL` matrix
5420f4b53cSBarry Smith .  rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided
5520f4b53cSBarry Smith -  rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL`
5667be906fSBarry Smith 
5767be906fSBarry Smith  Level: intermediate
58d4002b98SHong Zhang 
59d4002b98SHong Zhang  Notes:
6067be906fSBarry Smith  Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
6167be906fSBarry Smith  Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
6220f4b53cSBarry Smith  allocation.
63d4002b98SHong Zhang 
6411a5261eSBarry Smith  You can call `MatGetInfo()` to get information on how effective the preallocation was;
65d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
6667be906fSBarry Smith  You can also run with the option `-info` and look for messages with the string
67d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
68d4002b98SHong Zhang 
6927430b45SBarry Smith  Developer Note:
7067be906fSBarry Smith  Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
71d4002b98SHong Zhang  entries or columns indices.
72d4002b98SHong Zhang 
73c7ee91abSRichard Tran Mills  The maximum number of nonzeos in any row should be as accurate as possible.
74c7ee91abSRichard Tran Mills  If it is underestimated, you will get bad performance due to reallocation
7567be906fSBarry Smith  (`MatSeqXSELLReallocateSELL()`).
76d4002b98SHong Zhang 
7767be906fSBarry Smith  .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
78d4002b98SHong Zhang  @*/
79d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[])
80d71ae5a4SJacob Faibussowitsch {
81d4002b98SHong Zhang   PetscFunctionBegin;
82d4002b98SHong Zhang   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
83d4002b98SHong Zhang   PetscValidType(B, 1);
84cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen));
853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86d4002b98SHong Zhang }
87d4002b98SHong Zhang 
88d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[])
89d71ae5a4SJacob Faibussowitsch {
90d4002b98SHong Zhang   Mat_SeqSELL *b;
91d4002b98SHong Zhang   PetscInt     i, j, totalslices;
92*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
93*4e58db63SHong Zhang   PetscInt rlenmax = 0;
94*4e58db63SHong Zhang #endif
95d4002b98SHong Zhang   PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE;
96d4002b98SHong Zhang 
97d4002b98SHong Zhang   PetscFunctionBegin;
98d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
99d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
100d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
101d4002b98SHong Zhang     maxallocrow    = 0;
102d4002b98SHong Zhang   }
103d4002b98SHong Zhang 
1049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
1059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
106d4002b98SHong Zhang 
107d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
108d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
10908401ef6SPierre Jolivet   PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow);
110d4002b98SHong Zhang   if (rlen) {
111d4002b98SHong Zhang     for (i = 0; i < B->rmap->n; i++) {
11208401ef6SPierre Jolivet       PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]);
11308401ef6SPierre Jolivet       PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n);
114d4002b98SHong Zhang     }
115d4002b98SHong Zhang   }
116d4002b98SHong Zhang 
117d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
118d4002b98SHong Zhang 
119d4002b98SHong Zhang   b = (Mat_SeqSELL *)B->data;
120d4002b98SHong Zhang 
12107e43b41SHong Zhang   if (!b->sliceheight) { /* not set yet */
12207e43b41SHong Zhang #if defined(PETSC_HAVE_CUDA)
12307e43b41SHong Zhang     b->sliceheight = 16;
12407e43b41SHong Zhang #else
12507e43b41SHong Zhang     b->sliceheight = 8;
12607e43b41SHong Zhang #endif
12707e43b41SHong Zhang   }
12807e43b41SHong Zhang   totalslices    = PetscCeilInt(B->rmap->n, b->sliceheight);
129d4002b98SHong Zhang   b->totalslices = totalslices;
130d4002b98SHong Zhang   if (!skipallocation) {
13107e43b41SHong Zhang     if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n));
132d4002b98SHong Zhang 
133d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
1349566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx));
135d4002b98SHong Zhang     }
136d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
137d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
138d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
139*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
140*4e58db63SHong Zhang       rlenmax = maxallocrow;
141*4e58db63SHong Zhang       /* Pad the slice to DEVICE_MEM_ALIGN */
142*4e58db63SHong Zhang       while (b->sliceheight * maxallocrow % DEVICE_MEM_ALIGN) maxallocrow++;
143*4e58db63SHong Zhang #endif
14407e43b41SHong Zhang       for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow;
145d4002b98SHong Zhang     } else {
146*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
147*4e58db63SHong Zhang       PetscInt mul = DEVICE_MEM_ALIGN / b->sliceheight;
148*4e58db63SHong Zhang #endif
149d4002b98SHong Zhang       maxallocrow  = 0;
150d4002b98SHong Zhang       b->sliidx[0] = 0;
151d4002b98SHong Zhang       for (i = 1; i < totalslices; i++) {
152d4002b98SHong Zhang         b->sliidx[i] = 0;
15307e43b41SHong Zhang         for (j = 0; j < b->sliceheight; j++) { b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]); }
154*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
155*4e58db63SHong Zhang         rlenmax = PetscMax(b->sliidx[i], rlenmax);
156*4e58db63SHong Zhang         /* Pad the slice to DEVICE_MEM_ALIGN */
157*4e58db63SHong Zhang         b->sliidx[i] = ((b->sliidx[i] - 1) / mul + 1) * mul;
158*4e58db63SHong Zhang #endif
159d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i], maxallocrow);
16007e43b41SHong Zhang         PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i]));
161d4002b98SHong Zhang       }
162d4002b98SHong Zhang       /* last slice */
163d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
16407e43b41SHong Zhang       for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]);
165*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
166*4e58db63SHong Zhang       rlenmax                = PetscMax(b->sliidx[i], rlenmax);
167*4e58db63SHong Zhang       b->sliidx[totalslices] = ((b->sliidx[totalslices] - 1) / mul + 1) * mul;
168*4e58db63SHong Zhang #endif
169d4002b98SHong Zhang       maxallocrow            = PetscMax(b->sliidx[totalslices], maxallocrow);
17007e43b41SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices];
171d4002b98SHong Zhang     }
172d4002b98SHong Zhang 
173d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
174d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
1759566063dSJacob Faibussowitsch     PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx));
176d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
1779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx));
178d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
17907e43b41SHong Zhang     PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen));
180d4002b98SHong Zhang 
181d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
182d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
183d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
184d4002b98SHong Zhang   } else {
185d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
186d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
187d4002b98SHong Zhang   }
188d4002b98SHong Zhang 
189d4002b98SHong Zhang   b->nz          = 0;
190d4002b98SHong Zhang   b->maxallocrow = maxallocrow;
191*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
192*4e58db63SHong Zhang   b->rlenmax = rlenmax;
193*4e58db63SHong Zhang #else
194d4002b98SHong Zhang   b->rlenmax = maxallocrow;
195*4e58db63SHong Zhang #endif
196d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
197d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
1981baa6e33SBarry Smith   if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
200d4002b98SHong Zhang }
201d4002b98SHong Zhang 
202d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
203d71ae5a4SJacob Faibussowitsch {
2046108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2056108893eSStefano Zampini   PetscInt     shift;
2066108893eSStefano Zampini 
2076108893eSStefano Zampini   PetscFunctionBegin;
208aed4548fSBarry Smith   PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row);
2096108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
21007e43b41SHong Zhang   shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight);
2112d1451d4SHong Zhang   if (!a->getrowcols) { PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals)); }
2126108893eSStefano Zampini   if (idx) {
2136108893eSStefano Zampini     PetscInt j;
21407e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j];
2156108893eSStefano Zampini     *idx = a->getrowcols;
2166108893eSStefano Zampini   }
2176108893eSStefano Zampini   if (v) {
2186108893eSStefano Zampini     PetscInt j;
21907e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j];
2206108893eSStefano Zampini     *v = a->getrowvals;
2216108893eSStefano Zampini   }
2223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2236108893eSStefano Zampini }
2246108893eSStefano Zampini 
225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
226d71ae5a4SJacob Faibussowitsch {
2276108893eSStefano Zampini   PetscFunctionBegin;
2283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2296108893eSStefano Zampini }
2306108893eSStefano Zampini 
231d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
232d71ae5a4SJacob Faibussowitsch {
233d4002b98SHong Zhang   Mat          B;
234d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
235e3f1f374SStefano Zampini   PetscInt     i;
236d4002b98SHong Zhang 
237d4002b98SHong Zhang   PetscFunctionBegin;
238ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
239ad013a7bSRichard Tran Mills     B = *newmat;
2409566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
241ad013a7bSRichard Tran Mills   } else {
2429566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2439566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2449566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQAIJ));
2459566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen));
246ad013a7bSRichard Tran Mills   }
247d4002b98SHong Zhang 
248e3f1f374SStefano Zampini   for (i = 0; i < A->rmap->n; i++) {
249e108cb99SStefano Zampini     PetscInt     nz = 0, *cols = NULL;
250e108cb99SStefano Zampini     PetscScalar *vals = NULL;
251e3f1f374SStefano Zampini 
2529566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals));
2539566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES));
2549566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals));
255d4002b98SHong Zhang   }
256e3f1f374SStefano Zampini 
2579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
259d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
260d4002b98SHong Zhang 
261d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2629566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
263d4002b98SHong Zhang   } else {
264d4002b98SHong Zhang     *newmat = B;
265d4002b98SHong Zhang   }
2663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
267d4002b98SHong Zhang }
268d4002b98SHong Zhang 
269d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
270d4002b98SHong Zhang 
271d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
272d71ae5a4SJacob Faibussowitsch {
273d4002b98SHong Zhang   Mat                B;
274d4002b98SHong Zhang   Mat_SeqAIJ        *a  = (Mat_SeqAIJ *)A->data;
275d4002b98SHong Zhang   PetscInt          *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols;
276d4002b98SHong Zhang   const PetscInt    *cols;
277d4002b98SHong Zhang   const PetscScalar *vals;
278d4002b98SHong Zhang 
279d4002b98SHong Zhang   PetscFunctionBegin;
280ad013a7bSRichard Tran Mills 
281ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
282ad013a7bSRichard Tran Mills     B = *newmat;
283ad013a7bSRichard Tran Mills   } else {
284d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) || !a->ilen) {
2859566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(m, &rowlengths));
286ad540459SPierre Jolivet       for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i];
287d5e5b2e5SBarry Smith     }
288d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) && a->ilen) {
289d5e5b2e5SBarry Smith       PetscBool eq;
2909566063dSJacob Faibussowitsch       PetscCall(PetscMemcmp(rowlengths, a->ilen, m * sizeof(PetscInt), &eq));
29128b400f6SJacob Faibussowitsch       PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect");
2929566063dSJacob Faibussowitsch       PetscCall(PetscFree(rowlengths));
293d5e5b2e5SBarry Smith       rowlengths = a->ilen;
294d5e5b2e5SBarry Smith     } else if (a->ilen) rowlengths = a->ilen;
2959566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2969566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, m, n, m, n));
2979566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQSELL));
2989566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths));
2999566063dSJacob Faibussowitsch     if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths));
300ad013a7bSRichard Tran Mills   }
301d4002b98SHong Zhang 
302d4002b98SHong Zhang   for (row = 0; row < m; row++) {
3039566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
3049566063dSJacob Faibussowitsch     PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES));
3059566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
306d4002b98SHong Zhang   }
3079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
3089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
309d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
310d4002b98SHong Zhang 
311d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
3129566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
313d4002b98SHong Zhang   } else {
314d4002b98SHong Zhang     *newmat = B;
315d4002b98SHong Zhang   }
3163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
317d4002b98SHong Zhang }
318d4002b98SHong Zhang 
319d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy)
320d71ae5a4SJacob Faibussowitsch {
321d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
322d4002b98SHong Zhang   PetscScalar       *y;
323d4002b98SHong Zhang   const PetscScalar *x;
324d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
325d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
326d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
3277285fed1SHong Zhang   PetscInt           i, j;
328d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
329d4002b98SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
330d4002b98SHong Zhang   __m256i  vec_idx;
331d4002b98SHong Zhang   __mmask8 mask;
332d4002b98SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
333d4002b98SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
3345f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
335a48a6482SHong Zhang   __m128i   vec_idx;
336a48a6482SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
337a48a6482SHong Zhang   MatScalar yval;
338a48a6482SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
33921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
340d4002b98SHong Zhang   __m128d   vec_x_tmp;
341d4002b98SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
342d4002b98SHong Zhang   MatScalar yval;
343d4002b98SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
344d4002b98SHong Zhang #else
34507e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
34607e43b41SHong Zhang   PetscScalar *sum;
347d4002b98SHong Zhang #endif
348d4002b98SHong Zhang 
349d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
350d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
351d4002b98SHong Zhang #endif
352d4002b98SHong Zhang 
353d4002b98SHong Zhang   PetscFunctionBegin;
3549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
3559566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy, &y));
356d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
35707e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
358d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
359d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
360d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
361d4002b98SHong Zhang 
362d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
363d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
364d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
365d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
366d4002b98SHong Zhang 
367da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
368d4002b98SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
369d4002b98SHong Zhang     case 3:
370d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3719371c9d4SSatish Balay       acolidx += 8;
3729371c9d4SSatish Balay       aval += 8;
373d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3749371c9d4SSatish Balay       acolidx += 8;
3759371c9d4SSatish Balay       aval += 8;
376d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
3779371c9d4SSatish Balay       acolidx += 8;
3789371c9d4SSatish Balay       aval += 8;
379d4002b98SHong Zhang       j += 3;
380d4002b98SHong Zhang       break;
381d4002b98SHong Zhang     case 2:
382d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3839371c9d4SSatish Balay       acolidx += 8;
3849371c9d4SSatish Balay       aval += 8;
385d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3869371c9d4SSatish Balay       acolidx += 8;
3879371c9d4SSatish Balay       aval += 8;
388d4002b98SHong Zhang       j += 2;
389d4002b98SHong Zhang       break;
390d4002b98SHong Zhang     case 1:
391d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3929371c9d4SSatish Balay       acolidx += 8;
3939371c9d4SSatish Balay       aval += 8;
394d4002b98SHong Zhang       j += 1;
395d4002b98SHong Zhang       break;
396d4002b98SHong Zhang     }
397d4002b98SHong Zhang   #pragma novector
398d4002b98SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
399d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4009371c9d4SSatish Balay       acolidx += 8;
4019371c9d4SSatish Balay       aval += 8;
402d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
4039371c9d4SSatish Balay       acolidx += 8;
4049371c9d4SSatish Balay       aval += 8;
405d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
4069371c9d4SSatish Balay       acolidx += 8;
4079371c9d4SSatish Balay       aval += 8;
408d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
4099371c9d4SSatish Balay       acolidx += 8;
4109371c9d4SSatish Balay       aval += 8;
411d4002b98SHong Zhang     }
412d4002b98SHong Zhang 
413d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
414d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
415d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
416d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
417d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
418ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y);
419d4002b98SHong Zhang     } else {
420ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&y[8 * i], vec_y);
421d4002b98SHong Zhang     }
422d4002b98SHong Zhang   }
4235f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
42407e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
425a48a6482SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
426a48a6482SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
427a48a6482SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
428a48a6482SHong Zhang 
429a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
430a48a6482SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
431a48a6482SHong Zhang       rows_left = A->rmap->n - 8 * i;
432a48a6482SHong Zhang       for (r = 0; r < rows_left; ++r) {
433a48a6482SHong Zhang         yval       = (MatScalar)0;
434a48a6482SHong Zhang         row        = 8 * i + r;
435a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
436a48a6482SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
437a48a6482SHong Zhang         y[row] = yval;
438a48a6482SHong Zhang       }
439a48a6482SHong Zhang       break;
440a48a6482SHong Zhang     }
441a48a6482SHong Zhang 
442a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
443a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
444a48a6482SHong Zhang 
445a48a6482SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
446a48a6482SHong Zhang   #pragma novector
447a48a6482SHong Zhang   #pragma unroll(2)
448a48a6482SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
449a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4509371c9d4SSatish Balay       aval += 4;
4519371c9d4SSatish Balay       acolidx += 4;
452a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2);
4539371c9d4SSatish Balay       aval += 4;
4549371c9d4SSatish Balay       acolidx += 4;
455a48a6482SHong Zhang     }
456a48a6482SHong Zhang 
457ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8, vec_y);
458ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
459a48a6482SHong Zhang   }
46021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
46107e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
462d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
463d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
464d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
465d4002b98SHong Zhang 
466d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
467d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
468d4002b98SHong Zhang 
469d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
470d4002b98SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
471d4002b98SHong Zhang       rows_left = A->rmap->n - 8 * i;
472d4002b98SHong Zhang       for (r = 0; r < rows_left; ++r) {
473d4002b98SHong Zhang         yval       = (MatScalar)0;
474d4002b98SHong Zhang         row        = 8 * i + r;
475d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
476d4002b98SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
477d4002b98SHong Zhang         y[row] = yval;
478d4002b98SHong Zhang       }
479d4002b98SHong Zhang       break;
480d4002b98SHong Zhang     }
481d4002b98SHong Zhang 
482d4002b98SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
483a48a6482SHong Zhang   #pragma novector
484a48a6482SHong Zhang   #pragma unroll(2)
4857285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
486d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
487165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
488d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
489d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
490d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
491d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
492d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
493d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
494d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
495d4002b98SHong Zhang       aval += 4;
496d4002b98SHong Zhang 
497d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
498d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
499d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
500d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
501d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
502d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
503d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
504d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
505d4002b98SHong Zhang       aval += 4;
506d4002b98SHong Zhang     }
507d4002b98SHong Zhang 
508d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8, vec_y);
509d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
510d4002b98SHong Zhang   }
511d4002b98SHong Zhang #else
51207e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
513d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
51407e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
5152d1451d4SHong Zhang       sum[j] = 0.0;
51607e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
517d4002b98SHong Zhang     }
51807e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */
51907e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j];
520d4002b98SHong Zhang     } else {
52107e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j];
522d4002b98SHong Zhang     }
523d4002b98SHong Zhang   }
52407e43b41SHong Zhang   PetscCall(PetscFree(sum));
525d4002b98SHong Zhang #endif
526d4002b98SHong Zhang 
5279566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */
5289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
5299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy, &y));
5303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
531d4002b98SHong Zhang }
532d4002b98SHong Zhang 
533d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz)
535d71ae5a4SJacob Faibussowitsch {
536d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
537d4002b98SHong Zhang   PetscScalar       *y, *z;
538d4002b98SHong Zhang   const PetscScalar *x;
539d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
540d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
541d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
542d4002b98SHong Zhang   PetscInt           i, j;
543d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5447285fed1SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
545d4002b98SHong Zhang   __m256i  vec_idx;
546d4002b98SHong Zhang   __mmask8 mask;
5477285fed1SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
5487285fed1SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
54921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5507285fed1SHong Zhang   __m128d   vec_x_tmp;
5517285fed1SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
5527285fed1SHong Zhang   MatScalar yval;
5537285fed1SHong Zhang   PetscInt  r, row, nnz_in_row;
554d4002b98SHong Zhang #else
55507e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
55607e43b41SHong Zhang   PetscScalar *sum;
557d4002b98SHong Zhang #endif
558d4002b98SHong Zhang 
559d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
560d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
561d4002b98SHong Zhang #endif
562d4002b98SHong Zhang 
563d4002b98SHong Zhang   PetscFunctionBegin;
5642d1451d4SHong Zhang   if (!a->nz) {
5652d1451d4SHong Zhang     PetscCall(VecCopy(yy, zz));
5662d1451d4SHong Zhang     PetscFunctionReturn(PETSC_SUCCESS);
5672d1451d4SHong Zhang   }
5689566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
5699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayPair(yy, zz, &y, &z));
570d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
57107e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
5727285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
5737285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5747285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5757285fed1SHong Zhang 
576d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
577d4002b98SHong Zhang       mask  = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
578ef588d5cSRichard Tran Mills       vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]);
5797285fed1SHong Zhang     } else {
580ef588d5cSRichard Tran Mills       vec_y = _mm512_loadu_pd(&y[8 * i]);
5817285fed1SHong Zhang     }
5827285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5837285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5847285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5857285fed1SHong Zhang 
586da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
5877285fed1SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
5887285fed1SHong Zhang     case 3:
5897285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
5909371c9d4SSatish Balay       acolidx += 8;
5919371c9d4SSatish Balay       aval += 8;
5927285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
5939371c9d4SSatish Balay       acolidx += 8;
5949371c9d4SSatish Balay       aval += 8;
5957285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
5969371c9d4SSatish Balay       acolidx += 8;
5979371c9d4SSatish Balay       aval += 8;
5987285fed1SHong Zhang       j += 3;
5997285fed1SHong Zhang       break;
6007285fed1SHong Zhang     case 2:
6017285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6029371c9d4SSatish Balay       acolidx += 8;
6039371c9d4SSatish Balay       aval += 8;
6047285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6059371c9d4SSatish Balay       acolidx += 8;
6069371c9d4SSatish Balay       aval += 8;
6077285fed1SHong Zhang       j += 2;
6087285fed1SHong Zhang       break;
6097285fed1SHong Zhang     case 1:
6107285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6119371c9d4SSatish Balay       acolidx += 8;
6129371c9d4SSatish Balay       aval += 8;
6137285fed1SHong Zhang       j += 1;
6147285fed1SHong Zhang       break;
6157285fed1SHong Zhang     }
6167285fed1SHong Zhang   #pragma novector
6177285fed1SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
6187285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6199371c9d4SSatish Balay       acolidx += 8;
6209371c9d4SSatish Balay       aval += 8;
6217285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6229371c9d4SSatish Balay       acolidx += 8;
6239371c9d4SSatish Balay       aval += 8;
6247285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
6259371c9d4SSatish Balay       acolidx += 8;
6269371c9d4SSatish Balay       aval += 8;
6277285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
6289371c9d4SSatish Balay       acolidx += 8;
6299371c9d4SSatish Balay       aval += 8;
6307285fed1SHong Zhang     }
6317285fed1SHong Zhang 
6327285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
6337285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
6347285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
6357285fed1SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
636ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y);
637d4002b98SHong Zhang     } else {
638ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&z[8 * i], vec_y);
639d4002b98SHong Zhang     }
6407285fed1SHong Zhang   }
64121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
64207e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
6437285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
6447285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6457285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6467285fed1SHong Zhang 
6477285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
6487285fed1SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
6497285fed1SHong Zhang       for (r = 0; r < (A->rmap->n & 0x07); ++r) {
6507285fed1SHong Zhang         row        = 8 * i + r;
6517285fed1SHong Zhang         yval       = (MatScalar)0.0;
6527285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6537285fed1SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
6547285fed1SHong Zhang         z[row] = y[row] + yval;
6557285fed1SHong Zhang       }
6567285fed1SHong Zhang       break;
6577285fed1SHong Zhang     }
6587285fed1SHong Zhang 
6597285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y + 8 * i);
6607285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y + 8 * i + 4);
6617285fed1SHong Zhang 
6627285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6637285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
6647285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
665165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
6667285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6677285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
668165f9cc3SJed Brown       vec_x     = _mm256_setzero_pd();
6697285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6707285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6717285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6727285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6737285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
6747285fed1SHong Zhang       aval += 4;
6757285fed1SHong Zhang 
6767285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6777285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6787285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6797285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6807285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6817285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6827285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6837285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
6847285fed1SHong Zhang       aval += 4;
6857285fed1SHong Zhang     }
6867285fed1SHong Zhang 
6877285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8, vec_y);
6887285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8 + 4, vec_y2);
6897285fed1SHong Zhang   }
690d4002b98SHong Zhang #else
69107e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
6927285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
69307e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
6942d1451d4SHong Zhang       sum[j] = 0.0;
69507e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
696d4002b98SHong Zhang     }
69707e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
69807e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
699d4002b98SHong Zhang     } else {
70007e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
7017285fed1SHong Zhang     }
702d4002b98SHong Zhang   }
70307e43b41SHong Zhang   PetscCall(PetscFree(sum));
704d4002b98SHong Zhang #endif
705d4002b98SHong Zhang 
7069566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz));
7079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
7089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayPair(yy, zz, &y, &z));
7093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
710d4002b98SHong Zhang }
711d4002b98SHong Zhang 
712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy)
713d71ae5a4SJacob Faibussowitsch {
714d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
715d4002b98SHong Zhang   PetscScalar       *y;
716d4002b98SHong Zhang   const PetscScalar *x;
717d4002b98SHong Zhang   const MatScalar   *aval    = a->val;
718d4002b98SHong Zhang   const PetscInt    *acolidx = a->colidx;
71907e43b41SHong Zhang   PetscInt           i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight;
720d4002b98SHong Zhang 
721d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
722d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
723d4002b98SHong Zhang #endif
724d4002b98SHong Zhang 
725d4002b98SHong Zhang   PetscFunctionBegin;
726b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7279566063dSJacob Faibussowitsch     PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy));
7283ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
7299fc32365SStefano Zampini   }
7309566063dSJacob Faibussowitsch   if (zz != yy) PetscCall(VecCopy(zz, yy));
7312d1451d4SHong Zhang 
7322d1451d4SHong Zhang   if (a->nz) {
7339566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(xx, &x));
7349566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy, &y));
735d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
73607e43b41SHong Zhang       if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
73707e43b41SHong Zhang         for (r = 0; r < (A->rmap->n % sliceheight); ++r) {
73807e43b41SHong Zhang           row        = sliceheight * i + r;
7397285fed1SHong Zhang           nnz_in_row = a->rlen[row];
74007e43b41SHong Zhang           for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row];
7417285fed1SHong Zhang         }
7427285fed1SHong Zhang         break;
7437285fed1SHong Zhang       }
74407e43b41SHong Zhang       for (r = 0; r < sliceheight; ++r)
74507e43b41SHong Zhang         for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r];
746d4002b98SHong Zhang     }
7472d1451d4SHong Zhang     PetscCall(PetscLogFlops(2.0 * a->nz));
7489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(xx, &x));
7499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy, &y));
7502d1451d4SHong Zhang   }
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
752d4002b98SHong Zhang }
753d4002b98SHong Zhang 
754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy)
755d71ae5a4SJacob Faibussowitsch {
756d4002b98SHong Zhang   PetscFunctionBegin;
757b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7589566063dSJacob Faibussowitsch     PetscCall(MatMult_SeqSELL(A, xx, yy));
7599fc32365SStefano Zampini   } else {
7609566063dSJacob Faibussowitsch     PetscCall(VecSet(yy, 0.0));
7619566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy));
7629fc32365SStefano Zampini   }
7633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
764d4002b98SHong Zhang }
765d4002b98SHong Zhang 
766d4002b98SHong Zhang /*
767d4002b98SHong Zhang      Checks for missing diagonals
768d4002b98SHong Zhang */
769d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A, PetscBool *missing, PetscInt *d)
770d71ae5a4SJacob Faibussowitsch {
771d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
772d4002b98SHong Zhang   PetscInt    *diag, i;
773d4002b98SHong Zhang 
774d4002b98SHong Zhang   PetscFunctionBegin;
775d4002b98SHong Zhang   *missing = PETSC_FALSE;
776d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
777d4002b98SHong Zhang     *missing = PETSC_TRUE;
778d4002b98SHong Zhang     if (d) *d = 0;
7799566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n"));
780d4002b98SHong Zhang   } else {
781d4002b98SHong Zhang     diag = a->diag;
782d4002b98SHong Zhang     for (i = 0; i < A->rmap->n; i++) {
783d4002b98SHong Zhang       if (diag[i] == -1) {
784d4002b98SHong Zhang         *missing = PETSC_TRUE;
785d4002b98SHong Zhang         if (d) *d = i;
7869566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Matrix is missing diagonal number %" PetscInt_FMT "\n", i));
787d4002b98SHong Zhang         break;
788d4002b98SHong Zhang       }
789d4002b98SHong Zhang     }
790d4002b98SHong Zhang   }
7913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
792d4002b98SHong Zhang }
793d4002b98SHong Zhang 
794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
795d71ae5a4SJacob Faibussowitsch {
796d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
797d4002b98SHong Zhang   PetscInt     i, j, m = A->rmap->n, shift;
798d4002b98SHong Zhang 
799d4002b98SHong Zhang   PetscFunctionBegin;
800d4002b98SHong Zhang   if (!a->diag) {
8019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &a->diag));
802d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
803d4002b98SHong Zhang   }
804d4002b98SHong Zhang   for (i = 0; i < m; i++) {                                          /* loop over rows */
80507e43b41SHong Zhang     shift      = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
806d4002b98SHong Zhang     a->diag[i] = -1;
807d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
80807e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
80907e43b41SHong Zhang         a->diag[i] = shift + a->sliceheight * j;
810d4002b98SHong Zhang         break;
811d4002b98SHong Zhang       }
812d4002b98SHong Zhang     }
813d4002b98SHong Zhang   }
8143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
815d4002b98SHong Zhang }
816d4002b98SHong Zhang 
817d4002b98SHong Zhang /*
818d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
819d4002b98SHong Zhang */
820d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift)
821d71ae5a4SJacob Faibussowitsch {
822d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
823d4002b98SHong Zhang   PetscInt     i, *diag, m = A->rmap->n;
824d4002b98SHong Zhang   MatScalar   *val = a->val;
825d4002b98SHong Zhang   PetscScalar *idiag, *mdiag;
826d4002b98SHong Zhang 
827d4002b98SHong Zhang   PetscFunctionBegin;
8283ba16761SJacob Faibussowitsch   if (a->idiagvalid) PetscFunctionReturn(PETSC_SUCCESS);
8299566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqSELL(A));
830d4002b98SHong Zhang   diag = a->diag;
831d4002b98SHong Zhang   if (!a->idiag) {
8329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work));
833d4002b98SHong Zhang     val = a->val;
834d4002b98SHong Zhang   }
835d4002b98SHong Zhang   mdiag = a->mdiag;
836d4002b98SHong Zhang   idiag = a->idiag;
837d4002b98SHong Zhang 
838d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
839d4002b98SHong Zhang     for (i = 0; i < m; i++) {
840d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
841d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
8420fdf79fbSJacob Faibussowitsch         PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i);
8439566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i));
844d4002b98SHong Zhang         A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
845d4002b98SHong Zhang         A->factorerror_zeropivot_value = 0.0;
846d4002b98SHong Zhang         A->factorerror_zeropivot_row   = i;
847d4002b98SHong Zhang       }
848d4002b98SHong Zhang       idiag[i] = 1.0 / val[diag[i]];
849d4002b98SHong Zhang     }
8509566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(m));
851d4002b98SHong Zhang   } else {
852d4002b98SHong Zhang     for (i = 0; i < m; i++) {
853d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
854d4002b98SHong Zhang       idiag[i] = omega / (fshift + val[diag[i]]);
855d4002b98SHong Zhang     }
8569566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0 * m));
857d4002b98SHong Zhang   }
858d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
8593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
860d4002b98SHong Zhang }
861d4002b98SHong Zhang 
862d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
863d71ae5a4SJacob Faibussowitsch {
864d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
865d4002b98SHong Zhang 
866d4002b98SHong Zhang   PetscFunctionBegin;
8679566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices]));
8689566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
8693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
870d4002b98SHong Zhang }
871d4002b98SHong Zhang 
872d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A)
873d71ae5a4SJacob Faibussowitsch {
874d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
875d4002b98SHong Zhang 
876d4002b98SHong Zhang   PetscFunctionBegin;
877d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
8783ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz));
879d4002b98SHong Zhang #endif
8809566063dSJacob Faibussowitsch   PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx));
8819566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
8829566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
8839566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->diag));
8849566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->rlen));
8859566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sliidx));
8869566063dSJacob Faibussowitsch   PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work));
8879566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->solve_work));
8889566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
8899566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->saved_values));
8909566063dSJacob Faibussowitsch   PetscCall(PetscFree2(a->getrowcols, a->getrowvals));
8919566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->data));
892d4002b98SHong Zhang 
8939566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
8949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
8959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
8969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL));
8972e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL));
8982e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL));
8992d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_SeqSELL_SeqAIJ_C", NULL));
9002d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
9012d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_SeqSELL_SeqSELLCUDA_C", NULL));
9022d1451d4SHong Zhang #endif
90307e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL));
90407e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL));
90507e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL));
90607e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL));
9073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
908d4002b98SHong Zhang }
909d4002b98SHong Zhang 
910d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg)
911d71ae5a4SJacob Faibussowitsch {
912d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
913d4002b98SHong Zhang 
914d4002b98SHong Zhang   PetscFunctionBegin;
915d4002b98SHong Zhang   switch (op) {
916d71ae5a4SJacob Faibussowitsch   case MAT_ROW_ORIENTED:
917d71ae5a4SJacob Faibussowitsch     a->roworiented = flg;
918d71ae5a4SJacob Faibussowitsch     break;
919d71ae5a4SJacob Faibussowitsch   case MAT_KEEP_NONZERO_PATTERN:
920d71ae5a4SJacob Faibussowitsch     a->keepnonzeropattern = flg;
921d71ae5a4SJacob Faibussowitsch     break;
922d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATIONS:
923d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? 0 : 1);
924d71ae5a4SJacob Faibussowitsch     break;
925d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATION_ERR:
926d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -1 : 0);
927d71ae5a4SJacob Faibussowitsch     break;
928d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_ALLOCATION_ERR:
929d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -2 : 0);
930d71ae5a4SJacob Faibussowitsch     break;
931d71ae5a4SJacob Faibussowitsch   case MAT_UNUSED_NONZERO_LOCATION_ERR:
932d71ae5a4SJacob Faibussowitsch     a->nounused = (flg ? -1 : 0);
933d71ae5a4SJacob Faibussowitsch     break;
9348c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
935d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
936d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
937d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
938d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
939d71ae5a4SJacob Faibussowitsch     break;
940d4002b98SHong Zhang   case MAT_SPD:
941d4002b98SHong Zhang   case MAT_SYMMETRIC:
942d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
943d4002b98SHong Zhang   case MAT_HERMITIAN:
944d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
945b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
946b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
947d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
948d4002b98SHong Zhang     break;
949d71ae5a4SJacob Faibussowitsch   default:
950d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
951d4002b98SHong Zhang   }
9523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
953d4002b98SHong Zhang }
954d4002b98SHong Zhang 
955d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v)
956d71ae5a4SJacob Faibussowitsch {
957d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
958d4002b98SHong Zhang   PetscInt     i, j, n, shift;
959d4002b98SHong Zhang   PetscScalar *x, zero = 0.0;
960d4002b98SHong Zhang 
961d4002b98SHong Zhang   PetscFunctionBegin;
9629566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &n));
96308401ef6SPierre Jolivet   PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
964d4002b98SHong Zhang 
965d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
966d4002b98SHong Zhang     PetscInt *diag = a->diag;
9679566063dSJacob Faibussowitsch     PetscCall(VecGetArray(v, &x));
968d4002b98SHong Zhang     for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]];
9699566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(v, &x));
9703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
971d4002b98SHong Zhang   }
972d4002b98SHong Zhang 
9739566063dSJacob Faibussowitsch   PetscCall(VecSet(v, zero));
9749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
975d4002b98SHong Zhang   for (i = 0; i < n; i++) {                                     /* loop over rows */
97607e43b41SHong Zhang     shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
977d4002b98SHong Zhang     x[i]  = 0;
978d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
97907e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
98007e43b41SHong Zhang         x[i] = a->val[shift + a->sliceheight * j];
981d4002b98SHong Zhang         break;
982d4002b98SHong Zhang       }
983d4002b98SHong Zhang     }
984d4002b98SHong Zhang   }
9859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
9863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987d4002b98SHong Zhang }
988d4002b98SHong Zhang 
989d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr)
990d71ae5a4SJacob Faibussowitsch {
991d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
992d4002b98SHong Zhang   const PetscScalar *l, *r;
993d4002b98SHong Zhang   PetscInt           i, j, m, n, row;
994d4002b98SHong Zhang 
995d4002b98SHong Zhang   PetscFunctionBegin;
996d4002b98SHong Zhang   if (ll) {
997d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
998d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
9999566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &m));
100008401ef6SPierre Jolivet     PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length");
10019566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(ll, &l));
1002d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
100307e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
100407e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
100507e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row];
1006dab86139SHong Zhang         }
1007dab86139SHong Zhang       } else {
100807e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { a->val[j] *= l[a->sliceheight * i + row]; }
1009d4002b98SHong Zhang       }
1010dab86139SHong Zhang     }
10119566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(ll, &l));
10129566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1013d4002b98SHong Zhang   }
1014d4002b98SHong Zhang   if (rr) {
10159566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &n));
101608401ef6SPierre Jolivet     PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length");
10179566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(rr, &r));
1018d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
101907e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
102007e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) {
102107e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]];
1022dab86139SHong Zhang         }
1023dab86139SHong Zhang       } else {
1024ad540459SPierre Jolivet         for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]];
1025d4002b98SHong Zhang       }
1026dab86139SHong Zhang     }
10279566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(rr, &r));
10289566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1029d4002b98SHong Zhang   }
10309566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
10312d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
10322d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
10332d1451d4SHong Zhang #endif
10343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1035d4002b98SHong Zhang }
1036d4002b98SHong Zhang 
1037d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
1038d71ae5a4SJacob Faibussowitsch {
1039d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1040d4002b98SHong Zhang   PetscInt    *cp, i, k, low, high, t, row, col, l;
1041d4002b98SHong Zhang   PetscInt     shift;
1042d4002b98SHong Zhang   MatScalar   *vp;
1043d4002b98SHong Zhang 
1044d4002b98SHong Zhang   PetscFunctionBegin;
104568aafef3SStefano Zampini   for (k = 0; k < m; k++) { /* loop over requested rows */
1046d4002b98SHong Zhang     row = im[k];
1047d4002b98SHong Zhang     if (row < 0) continue;
10486bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
104907e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */
1050d4002b98SHong Zhang     cp    = a->colidx + shift;                                        /* pointer to the row */
1051d4002b98SHong Zhang     vp    = a->val + shift;                                           /* pointer to the row */
105268aafef3SStefano Zampini     for (l = 0; l < n; l++) {                                         /* loop over requested columns */
1053d4002b98SHong Zhang       col = in[l];
1054d4002b98SHong Zhang       if (col < 0) continue;
10556bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
10569371c9d4SSatish Balay       high = a->rlen[row];
10579371c9d4SSatish Balay       low  = 0; /* assume unsorted */
1058d4002b98SHong Zhang       while (high - low > 5) {
1059d4002b98SHong Zhang         t = (low + high) / 2;
106007e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1061d4002b98SHong Zhang         else low = t;
1062d4002b98SHong Zhang       }
1063d4002b98SHong Zhang       for (i = low; i < high; i++) {
106407e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
106507e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
106607e43b41SHong Zhang           *v++ = *(vp + a->sliceheight * i);
1067d4002b98SHong Zhang           goto finished;
1068d4002b98SHong Zhang         }
1069d4002b98SHong Zhang       }
1070d4002b98SHong Zhang       *v++ = 0.0;
1071d4002b98SHong Zhang     finished:;
1072d4002b98SHong Zhang     }
1073d4002b98SHong Zhang   }
10743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1075d4002b98SHong Zhang }
1076d4002b98SHong Zhang 
1077d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer)
1078d71ae5a4SJacob Faibussowitsch {
1079d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1080d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1081d4002b98SHong Zhang   const char       *name;
1082d4002b98SHong Zhang   PetscViewerFormat format;
1083d4002b98SHong Zhang 
1084d4002b98SHong Zhang   PetscFunctionBegin;
10859566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
1086d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1087d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1088d4002b98SHong Zhang     /*
1089d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
1090d4002b98SHong Zhang       nofinalvalue = 1;
1091d4002b98SHong Zhang     }
1092d4002b98SHong Zhang     */
10939566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
10949566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n));
10959566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz));
1096d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
10979566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue));
1098d4002b98SHong Zhang #else
10999566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue));
1100d4002b98SHong Zhang #endif
11019566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n"));
1102d4002b98SHong Zhang 
1103d4002b98SHong Zhang     for (i = 0; i < m; i++) {
110407e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1105d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1106d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
110707e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1108d4002b98SHong Zhang #else
110907e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j]));
1110d4002b98SHong Zhang #endif
1111d4002b98SHong Zhang       }
1112d4002b98SHong Zhang     }
1113d4002b98SHong Zhang     /*
1114d4002b98SHong Zhang     if (nofinalvalue) {
1115d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11169566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n",m,A->cmap->n,0.,0.));
1117d4002b98SHong Zhang #else
11189566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n",m,A->cmap->n,0.0));
1119d4002b98SHong Zhang #endif
1120d4002b98SHong Zhang     }
1121d4002b98SHong Zhang     */
11229566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)A, &name));
11239566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name));
11249566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1125d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
11263ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1127d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
11289566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1129d4002b98SHong Zhang     for (i = 0; i < m; i++) {
11309566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
113107e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1132d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1133d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
113407e43b41SHong Zhang         if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
113507e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
113607e43b41SHong Zhang         } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
113707e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
113807e43b41SHong Zhang         } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
113907e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1140d4002b98SHong Zhang         }
1141d4002b98SHong Zhang #else
114207e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1143d4002b98SHong Zhang #endif
1144d4002b98SHong Zhang       }
11459566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1146d4002b98SHong Zhang     }
11479566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1148d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1149d4002b98SHong Zhang     PetscInt    cnt = 0, jcnt;
1150d4002b98SHong Zhang     PetscScalar value;
1151d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1152d4002b98SHong Zhang     PetscBool realonly = PETSC_TRUE;
1153d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1154d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1155d4002b98SHong Zhang         realonly = PETSC_FALSE;
1156d4002b98SHong Zhang         break;
1157d4002b98SHong Zhang       }
1158d4002b98SHong Zhang     }
1159d4002b98SHong Zhang #endif
1160d4002b98SHong Zhang 
11619566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1162d4002b98SHong Zhang     for (i = 0; i < m; i++) {
1163d4002b98SHong Zhang       jcnt  = 0;
116407e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1165d4002b98SHong Zhang       for (j = 0; j < A->cmap->n; j++) {
116607e43b41SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) {
1167d4002b98SHong Zhang           value = a->val[cnt++];
1168d4002b98SHong Zhang           jcnt++;
1169d4002b98SHong Zhang         } else {
1170d4002b98SHong Zhang           value = 0.0;
1171d4002b98SHong Zhang         }
1172d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1173d4002b98SHong Zhang         if (realonly) {
11749566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value)));
1175d4002b98SHong Zhang         } else {
11769566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value)));
1177d4002b98SHong Zhang         }
1178d4002b98SHong Zhang #else
11799566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value));
1180d4002b98SHong Zhang #endif
1181d4002b98SHong Zhang       }
11829566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1183d4002b98SHong Zhang     }
11849566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1185d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1186d4002b98SHong Zhang     PetscInt fshift = 1;
11879566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1188d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11899566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n"));
1190d4002b98SHong Zhang #else
11919566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n"));
1192d4002b98SHong Zhang #endif
11939566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz));
1194d4002b98SHong Zhang     for (i = 0; i < m; i++) {
119507e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1196d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1197d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
119807e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1199d4002b98SHong Zhang #else
120007e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j]));
1201d4002b98SHong Zhang #endif
1202d4002b98SHong Zhang       }
1203d4002b98SHong Zhang     }
12049566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
120568aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
120668aafef3SStefano Zampini     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
120768aafef3SStefano Zampini       PetscInt row;
12089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1]));
120907e43b41SHong Zhang       for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
121068aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
121168aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
121207e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
121368aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
121407e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j])));
121568aafef3SStefano Zampini         } else {
121607e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j])));
121768aafef3SStefano Zampini         }
121868aafef3SStefano Zampini #else
121907e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j]));
122068aafef3SStefano Zampini #endif
122168aafef3SStefano Zampini       }
122268aafef3SStefano Zampini     }
1223d4002b98SHong Zhang   } else {
12249566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1225d4002b98SHong Zhang     if (A->factortype) {
1226d4002b98SHong Zhang       for (i = 0; i < m; i++) {
122707e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12289566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1229d4002b98SHong Zhang         /* L part */
123007e43b41SHong Zhang         for (j = shift; j < a->diag[i]; j += a->sliceheight) {
1231d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
123207e43b41SHong Zhang           if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) {
12339566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
123407e43b41SHong Zhang           } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) {
12359566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1236d4002b98SHong Zhang           } else {
12379566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1238d4002b98SHong Zhang           }
1239d4002b98SHong Zhang #else
12409566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1241d4002b98SHong Zhang #endif
1242d4002b98SHong Zhang         }
1243d4002b98SHong Zhang         /* diagonal */
1244d4002b98SHong Zhang         j = a->diag[i];
1245d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1246d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
12479566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j])));
1248d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12499566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j]))));
1250d4002b98SHong Zhang         } else {
12519566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j])));
1252d4002b98SHong Zhang         }
1253d4002b98SHong Zhang #else
12549566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1.0 / a->val[j])));
1255d4002b98SHong Zhang #endif
1256d4002b98SHong Zhang 
1257d4002b98SHong Zhang         /* U part */
125807e43b41SHong Zhang         for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) {
1259d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1260d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
12619566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
1262d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12639566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1264d4002b98SHong Zhang           } else {
12659566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1266d4002b98SHong Zhang           }
1267d4002b98SHong Zhang #else
12689566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1269d4002b98SHong Zhang #endif
1270d4002b98SHong Zhang         }
12719566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1272d4002b98SHong Zhang       }
1273d4002b98SHong Zhang     } else {
1274d4002b98SHong Zhang       for (i = 0; i < m; i++) {
127507e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12769566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1277d4002b98SHong Zhang         for (j = 0; j < a->rlen[i]; j++) {
1278d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1279d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
128007e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1281d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
128207e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1283d4002b98SHong Zhang           } else {
128407e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1285d4002b98SHong Zhang           }
1286d4002b98SHong Zhang #else
128707e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1288d4002b98SHong Zhang #endif
1289d4002b98SHong Zhang         }
12909566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1291d4002b98SHong Zhang       }
1292d4002b98SHong Zhang     }
12939566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1294d4002b98SHong Zhang   }
12959566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
12963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1297d4002b98SHong Zhang }
1298d4002b98SHong Zhang 
1299d4002b98SHong Zhang #include <petscdraw.h>
1300d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa)
1301d71ae5a4SJacob Faibussowitsch {
1302d4002b98SHong Zhang   Mat               A = (Mat)Aa;
1303d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1304d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1305d4002b98SHong Zhang   int               color;
1306d4002b98SHong Zhang   PetscReal         xl, yl, xr, yr, x_l, x_r, y_l, y_r;
1307d4002b98SHong Zhang   PetscViewer       viewer;
1308d4002b98SHong Zhang   PetscViewerFormat format;
1309d4002b98SHong Zhang 
1310d4002b98SHong Zhang   PetscFunctionBegin;
13119566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
13129566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
13139566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
1314d4002b98SHong Zhang 
1315d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1316d4002b98SHong Zhang 
1317d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1318d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1319d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1320d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1321d4002b98SHong Zhang     for (i = 0; i < m; i++) {
132207e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
13239371c9d4SSatish Balay       y_l   = m - i - 1.0;
13249371c9d4SSatish Balay       y_r   = y_l + 1.0;
1325d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
132607e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13279371c9d4SSatish Balay         x_r = x_l + 1.0;
132807e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue;
13299566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1330d4002b98SHong Zhang       }
1331d4002b98SHong Zhang     }
1332d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1333d4002b98SHong Zhang     for (i = 0; i < m; i++) {
133407e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13359371c9d4SSatish Balay       y_l   = m - i - 1.0;
13369371c9d4SSatish Balay       y_r   = y_l + 1.0;
1337d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
133807e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13399371c9d4SSatish Balay         x_r = x_l + 1.0;
134007e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.) continue;
13419566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1342d4002b98SHong Zhang       }
1343d4002b98SHong Zhang     }
1344d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1345d4002b98SHong Zhang     for (i = 0; i < m; i++) {
134607e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13479371c9d4SSatish Balay       y_l   = m - i - 1.0;
13489371c9d4SSatish Balay       y_r   = y_l + 1.0;
1349d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
135007e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13519371c9d4SSatish Balay         x_r = x_l + 1.0;
135207e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue;
13539566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1354d4002b98SHong Zhang       }
1355d4002b98SHong Zhang     }
1356d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1357d4002b98SHong Zhang   } else {
1358d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1359d4002b98SHong Zhang     /* first determine max of all nonzero values */
1360d4002b98SHong Zhang     PetscReal minv = 0.0, maxv = 0.0;
1361d4002b98SHong Zhang     PetscInt  count = 0;
1362d4002b98SHong Zhang     PetscDraw popup;
1363d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1364d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1365d4002b98SHong Zhang     }
1366d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
13679566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
13689566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, minv, maxv));
1369d4002b98SHong Zhang 
1370d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1371d4002b98SHong Zhang     for (i = 0; i < m; i++) {
137207e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1373d4002b98SHong Zhang       y_l   = m - i - 1.0;
1374d4002b98SHong Zhang       y_r   = y_l + 1.0;
1375d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
137607e43b41SHong Zhang         x_l   = a->colidx[shift + a->sliceheight * j];
1377d4002b98SHong Zhang         x_r   = x_l + 1.0;
1378d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv);
13799566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1380d4002b98SHong Zhang         count++;
1381d4002b98SHong Zhang       }
1382d4002b98SHong Zhang     }
1383d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1384d4002b98SHong Zhang   }
13853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1386d4002b98SHong Zhang }
1387d4002b98SHong Zhang 
1388d4002b98SHong Zhang #include <petscdraw.h>
1389d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer)
1390d71ae5a4SJacob Faibussowitsch {
1391d4002b98SHong Zhang   PetscDraw draw;
1392d4002b98SHong Zhang   PetscReal xr, yr, xl, yl, h, w;
1393d4002b98SHong Zhang   PetscBool isnull;
1394d4002b98SHong Zhang 
1395d4002b98SHong Zhang   PetscFunctionBegin;
13969566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13979566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
13983ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1399d4002b98SHong Zhang 
14009371c9d4SSatish Balay   xr = A->cmap->n;
14019371c9d4SSatish Balay   yr = A->rmap->n;
14029371c9d4SSatish Balay   h  = yr / 10.0;
14039371c9d4SSatish Balay   w  = xr / 10.0;
14049371c9d4SSatish Balay   xr += w;
14059371c9d4SSatish Balay   yr += h;
14069371c9d4SSatish Balay   xl = -w;
14079371c9d4SSatish Balay   yl = -h;
14089566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
14099566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
14109566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A));
14119566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
14129566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
14133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1414d4002b98SHong Zhang }
1415d4002b98SHong Zhang 
1416d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer)
1417d71ae5a4SJacob Faibussowitsch {
1418d4002b98SHong Zhang   PetscBool iascii, isbinary, isdraw;
1419d4002b98SHong Zhang 
1420d4002b98SHong Zhang   PetscFunctionBegin;
14219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
14229566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
14239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
1424d4002b98SHong Zhang   if (iascii) {
14259566063dSJacob Faibussowitsch     PetscCall(MatView_SeqSELL_ASCII(A, viewer));
1426d4002b98SHong Zhang   } else if (isbinary) {
14279566063dSJacob Faibussowitsch     /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */
14281baa6e33SBarry Smith   } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer));
14293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1430d4002b98SHong Zhang }
1431d4002b98SHong Zhang 
1432d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode)
1433d71ae5a4SJacob Faibussowitsch {
1434d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1435d4002b98SHong Zhang   PetscInt     i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k;
1436d4002b98SHong Zhang   MatScalar   *vp;
1437d4002b98SHong Zhang 
1438d4002b98SHong Zhang   PetscFunctionBegin;
14393ba16761SJacob Faibussowitsch   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS);
1440d4002b98SHong Zhang   /* To do: compress out the unused elements */
14419566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqSELL(A));
14429566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz));
14439566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs));
14449566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax));
14452d1451d4SHong Zhang   a->nonzerorowcnt = 0;
1446d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1447d4002b98SHong Zhang   for (i = 0; i < a->totalslices; ++i) {
1448d4002b98SHong Zhang     shift = a->sliidx[i];                                                   /* starting index of the slice */
1449d4002b98SHong Zhang     cp    = a->colidx + shift;                                              /* pointer to the column indices of the slice */
1450d4002b98SHong Zhang     vp    = a->val + shift;                                                 /* pointer to the nonzero values of the slice */
145107e43b41SHong Zhang     for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */
145207e43b41SHong Zhang       row  = a->sliceheight * i + row_in_slice;
1453d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1454d4002b98SHong Zhang       /*
1455d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1456d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1457d4002b98SHong Zhang       */
1458d4002b98SHong Zhang       lastcol = 0;
1459d4002b98SHong Zhang       if (nrow > 0) { /* nonempty row */
14602d1451d4SHong Zhang         a->nonzerorowcnt++;
146107e43b41SHong Zhang         lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */
1462aaa8cc7dSPierre Jolivet       } else if (!row_in_slice) {                                 /* first row of the correct slice is empty */
146307e43b41SHong Zhang         for (j = 1; j < a->sliceheight; j++) {
146407e43b41SHong Zhang           if (a->rlen[a->sliceheight * i + j]) {
1465d4002b98SHong Zhang             lastcol = cp[j];
1466d4002b98SHong Zhang             break;
1467d4002b98SHong Zhang           }
1468d4002b98SHong Zhang         }
1469d4002b98SHong Zhang       } else {
1470d4002b98SHong Zhang         if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */
1471d4002b98SHong Zhang       }
1472d4002b98SHong Zhang 
147307e43b41SHong Zhang       for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) {
147407e43b41SHong Zhang         cp[a->sliceheight * k + row_in_slice] = lastcol;
147507e43b41SHong Zhang         vp[a->sliceheight * k + row_in_slice] = (MatScalar)0;
1476d4002b98SHong Zhang       }
1477d4002b98SHong Zhang     }
1478d4002b98SHong Zhang   }
1479d4002b98SHong Zhang 
1480d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1481d4002b98SHong Zhang   a->reallocs = 0;
1482d4002b98SHong Zhang 
14839566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
14843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1485d4002b98SHong Zhang }
1486d4002b98SHong Zhang 
1487d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info)
1488d71ae5a4SJacob Faibussowitsch {
1489d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1490d4002b98SHong Zhang 
1491d4002b98SHong Zhang   PetscFunctionBegin;
1492d4002b98SHong Zhang   info->block_size   = 1.0;
14933966268fSBarry Smith   info->nz_allocated = a->maxallocmat;
14943966268fSBarry Smith   info->nz_used      = a->sliidx[a->totalslices]; /* include padding zeros */
14953966268fSBarry Smith   info->nz_unneeded  = (a->maxallocmat - a->sliidx[a->totalslices]);
14963966268fSBarry Smith   info->assemblies   = A->num_ass;
14973966268fSBarry Smith   info->mallocs      = A->info.mallocs;
14984dfa11a4SJacob Faibussowitsch   info->memory       = 0; /* REVIEW ME */
1499d4002b98SHong Zhang   if (A->factortype) {
1500d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1501d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1502d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1503d4002b98SHong Zhang   } else {
1504d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1505d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1506d4002b98SHong Zhang     info->factor_mallocs    = 0;
1507d4002b98SHong Zhang   }
15083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1509d4002b98SHong Zhang }
1510d4002b98SHong Zhang 
1511d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
1512d71ae5a4SJacob Faibussowitsch {
1513d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1514d4002b98SHong Zhang   PetscInt     shift, i, k, l, low, high, t, ii, row, col, nrow;
1515d4002b98SHong Zhang   PetscInt    *cp, nonew = a->nonew, lastcol = -1;
1516d4002b98SHong Zhang   MatScalar   *vp, value;
15172d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
15182d1451d4SHong Zhang   PetscBool inserted = PETSC_FALSE;
1519*4e58db63SHong Zhang   PetscInt  mul      = DEVICE_MEM_ALIGN / a->sliceheight;
15202d1451d4SHong Zhang #endif
1521d4002b98SHong Zhang 
1522d4002b98SHong Zhang   PetscFunctionBegin;
1523d4002b98SHong Zhang   for (k = 0; k < m; k++) { /* loop over added rows */
1524d4002b98SHong Zhang     row = im[k];
1525d4002b98SHong Zhang     if (row < 0) continue;
15266bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
152707e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */
1528d4002b98SHong Zhang     cp    = a->colidx + shift;                                      /* pointer to the row */
1529d4002b98SHong Zhang     vp    = a->val + shift;                                         /* pointer to the row */
1530d4002b98SHong Zhang     nrow  = a->rlen[row];
1531d4002b98SHong Zhang     low   = 0;
1532d4002b98SHong Zhang     high  = nrow;
1533d4002b98SHong Zhang 
1534d4002b98SHong Zhang     for (l = 0; l < n; l++) { /* loop over added columns */
1535d4002b98SHong Zhang       col = in[l];
1536d4002b98SHong Zhang       if (col < 0) continue;
15376bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
1538d4002b98SHong Zhang       if (a->roworiented) {
1539d4002b98SHong Zhang         value = v[l + k * n];
1540d4002b98SHong Zhang       } else {
1541d4002b98SHong Zhang         value = v[k + l * m];
1542d4002b98SHong Zhang       }
1543d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1544d4002b98SHong Zhang 
1545ed73aabaSBarry Smith       /* search in this row for the specified column, i indicates the column to be set */
1546d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1547d4002b98SHong Zhang       else high = nrow;
1548d4002b98SHong Zhang       lastcol = col;
1549d4002b98SHong Zhang       while (high - low > 5) {
1550d4002b98SHong Zhang         t = (low + high) / 2;
155107e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1552d4002b98SHong Zhang         else low = t;
1553d4002b98SHong Zhang       }
1554d4002b98SHong Zhang       for (i = low; i < high; i++) {
155507e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
155607e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
155707e43b41SHong Zhang           if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value;
155807e43b41SHong Zhang           else *(vp + a->sliceheight * i) = value;
15592d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
15602d1451d4SHong Zhang           inserted = PETSC_TRUE;
15612d1451d4SHong Zhang #endif
1562d4002b98SHong Zhang           low = i + 1;
1563d4002b98SHong Zhang           goto noinsert;
1564d4002b98SHong Zhang         }
1565d4002b98SHong Zhang       }
1566d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1567d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
156808401ef6SPierre Jolivet       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
1569*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
1570*4e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, mul);
1571*4e58db63SHong Zhang #else
1572d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
1573*4e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, 1);
1574*4e58db63SHong Zhang #endif
1575d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1576d4002b98SHong Zhang       for (ii = nrow - 1; ii >= i; ii--) {
157707e43b41SHong Zhang         *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii);
157807e43b41SHong Zhang         *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii);
1579d4002b98SHong Zhang       }
1580d4002b98SHong Zhang       a->rlen[row]++;
158107e43b41SHong Zhang       *(cp + a->sliceheight * i) = col;
158207e43b41SHong Zhang       *(vp + a->sliceheight * i) = value;
1583d4002b98SHong Zhang       a->nz++;
1584d4002b98SHong Zhang       A->nonzerostate++;
15852d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
15862d1451d4SHong Zhang       inserted = PETSC_TRUE;
15872d1451d4SHong Zhang #endif
15889371c9d4SSatish Balay       low = i + 1;
15899371c9d4SSatish Balay       high++;
15909371c9d4SSatish Balay       nrow++;
1591d4002b98SHong Zhang     noinsert:;
1592d4002b98SHong Zhang     }
1593d4002b98SHong Zhang     a->rlen[row] = nrow;
1594d4002b98SHong Zhang   }
15952d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
15962d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU;
15972d1451d4SHong Zhang #endif
15983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1599d4002b98SHong Zhang }
1600d4002b98SHong Zhang 
1601d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str)
1602d71ae5a4SJacob Faibussowitsch {
1603d4002b98SHong Zhang   PetscFunctionBegin;
1604d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1605d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1606d4002b98SHong Zhang     Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1607d4002b98SHong Zhang     Mat_SeqSELL *b = (Mat_SeqSELL *)B->data;
1608d4002b98SHong Zhang 
160908401ef6SPierre Jolivet     PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
16109566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices]));
1611d4002b98SHong Zhang   } else {
16129566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
1613d4002b98SHong Zhang   }
16143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1615d4002b98SHong Zhang }
1616d4002b98SHong Zhang 
1617d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A)
1618d71ae5a4SJacob Faibussowitsch {
1619d4002b98SHong Zhang   PetscFunctionBegin;
16209566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL));
16213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1622d4002b98SHong Zhang }
1623d4002b98SHong Zhang 
1624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[])
1625d71ae5a4SJacob Faibussowitsch {
1626d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1627d4002b98SHong Zhang 
1628d4002b98SHong Zhang   PetscFunctionBegin;
1629d4002b98SHong Zhang   *array = a->val;
16303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1631d4002b98SHong Zhang }
1632d4002b98SHong Zhang 
1633d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[])
1634d71ae5a4SJacob Faibussowitsch {
1635d4002b98SHong Zhang   PetscFunctionBegin;
16363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1637d4002b98SHong Zhang }
1638d4002b98SHong Zhang 
1639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_SeqSELL(Mat A)
1640d71ae5a4SJacob Faibussowitsch {
1641d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1642d4002b98SHong Zhang   PetscInt     i;
1643d4002b98SHong Zhang   MatScalar   *aval = a->val;
1644d4002b98SHong Zhang 
1645d4002b98SHong Zhang   PetscFunctionBegin;
1646d4002b98SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscRealPart(aval[i]);
16472d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16482d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
16492d1451d4SHong Zhang #endif
16503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1651d4002b98SHong Zhang }
1652d4002b98SHong Zhang 
1653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1654d71ae5a4SJacob Faibussowitsch {
1655d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1656d4002b98SHong Zhang   PetscInt     i;
1657d4002b98SHong Zhang   MatScalar   *aval = a->val;
1658d4002b98SHong Zhang 
1659d4002b98SHong Zhang   PetscFunctionBegin;
1660d4002b98SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
16619566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
16622d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16632d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
16642d1451d4SHong Zhang #endif
16653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1666d4002b98SHong Zhang }
1667d4002b98SHong Zhang 
1668d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha)
1669d71ae5a4SJacob Faibussowitsch {
1670d4002b98SHong Zhang   Mat_SeqSELL *a      = (Mat_SeqSELL *)inA->data;
1671d4002b98SHong Zhang   MatScalar   *aval   = a->val;
1672d4002b98SHong Zhang   PetscScalar  oalpha = alpha;
1673d4002b98SHong Zhang   PetscBLASInt one    = 1, size;
1674d4002b98SHong Zhang 
1675d4002b98SHong Zhang   PetscFunctionBegin;
16769566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size));
1677792fecdfSBarry Smith   PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one));
16789566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(a->nz));
16799566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(inA));
16802d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16812d1451d4SHong Zhang   if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU;
16822d1451d4SHong Zhang #endif
16833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1684d4002b98SHong Zhang }
1685d4002b98SHong Zhang 
1686d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a)
1687d71ae5a4SJacob Faibussowitsch {
1688d4002b98SHong Zhang   Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data;
1689d4002b98SHong Zhang 
1690d4002b98SHong Zhang   PetscFunctionBegin;
169148a46eb9SPierre Jolivet   if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL));
16929566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
16933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1694d4002b98SHong Zhang }
1695d4002b98SHong Zhang 
1696d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1697d71ae5a4SJacob Faibussowitsch {
1698d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
1699d4002b98SHong Zhang   PetscScalar       *x, sum, *t;
1700f4259b30SLisandro Dalcin   const MatScalar   *idiag = NULL, *mdiag;
1701d4002b98SHong Zhang   const PetscScalar *b, *xb;
1702d4002b98SHong Zhang   PetscInt           n, m = A->rmap->n, i, j, shift;
1703d4002b98SHong Zhang   const PetscInt    *diag;
1704d4002b98SHong Zhang 
1705d4002b98SHong Zhang   PetscFunctionBegin;
1706d4002b98SHong Zhang   its = its * lits;
1707d4002b98SHong Zhang 
1708d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
17099566063dSJacob Faibussowitsch   if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A, omega, fshift));
1710d4002b98SHong Zhang   a->fshift = fshift;
1711d4002b98SHong Zhang   a->omega  = omega;
1712d4002b98SHong Zhang 
1713d4002b98SHong Zhang   diag  = a->diag;
1714d4002b98SHong Zhang   t     = a->ssor_work;
1715d4002b98SHong Zhang   idiag = a->idiag;
1716d4002b98SHong Zhang   mdiag = a->mdiag;
1717d4002b98SHong Zhang 
17189566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx, &x));
17199566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb, &b));
1720d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
172108401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented");
172208401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented");
1723aed4548fSBarry Smith   PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat");
1724d4002b98SHong Zhang 
1725d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1726d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1727d4002b98SHong Zhang       for (i = 0; i < m; i++) {
172807e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1729d4002b98SHong Zhang         sum   = b[i];
173007e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
173107e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1732d4002b98SHong Zhang         t[i] = sum;
1733d4002b98SHong Zhang         x[i] = sum * idiag[i];
1734d4002b98SHong Zhang       }
1735d4002b98SHong Zhang       xb = t;
17369566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz));
1737d4002b98SHong Zhang     } else xb = b;
1738d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1739d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
174007e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1741d4002b98SHong Zhang         sum   = xb[i];
174207e43b41SHong Zhang         n     = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
174307e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1744d4002b98SHong Zhang         if (xb == b) {
1745d4002b98SHong Zhang           x[i] = sum * idiag[i];
1746d4002b98SHong Zhang         } else {
1747d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1748d4002b98SHong Zhang         }
1749d4002b98SHong Zhang       }
17509566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1751d4002b98SHong Zhang     }
1752d4002b98SHong Zhang     its--;
1753d4002b98SHong Zhang   }
1754d4002b98SHong Zhang   while (its--) {
1755d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1756d4002b98SHong Zhang       for (i = 0; i < m; i++) {
1757d4002b98SHong Zhang         /* lower */
175807e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1759d4002b98SHong Zhang         sum   = b[i];
176007e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
176107e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1762d4002b98SHong Zhang         t[i] = sum; /* save application of the lower-triangular part */
1763d4002b98SHong Zhang         /* upper */
176407e43b41SHong Zhang         n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
176507e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1766d4002b98SHong Zhang         x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1767d4002b98SHong Zhang       }
1768d4002b98SHong Zhang       xb = t;
17699566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * a->nz));
1770d4002b98SHong Zhang     } else xb = b;
1771d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1772d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
177307e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1774d4002b98SHong Zhang         sum   = xb[i];
1775d4002b98SHong Zhang         if (xb == b) {
1776d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1777d4002b98SHong Zhang           n = a->rlen[i];
177807e43b41SHong Zhang           for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1779d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i];
1780d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
178107e43b41SHong Zhang           n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
178207e43b41SHong Zhang           for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1783d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1784d4002b98SHong Zhang         }
1785d4002b98SHong Zhang       }
1786d4002b98SHong Zhang       if (xb == b) {
17879566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * a->nz));
1788d4002b98SHong Zhang       } else {
17899566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1790d4002b98SHong Zhang       }
1791d4002b98SHong Zhang     }
1792d4002b98SHong Zhang   }
17939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx, &x));
17949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb, &b));
17953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1796d4002b98SHong Zhang }
1797d4002b98SHong Zhang 
1798d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17996108893eSStefano Zampini                                        MatGetRow_SeqSELL,
18006108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1801d4002b98SHong Zhang                                        MatMult_SeqSELL,
1802d4002b98SHong Zhang                                        /* 4*/ MatMultAdd_SeqSELL,
1803d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1804d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1805f4259b30SLisandro Dalcin                                        NULL,
1806f4259b30SLisandro Dalcin                                        NULL,
1807f4259b30SLisandro Dalcin                                        NULL,
1808f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1809f4259b30SLisandro Dalcin                                        NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813d4002b98SHong Zhang                                        /* 15*/ MatGetInfo_SeqSELL,
1814d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1815d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1816d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        /* 20*/ NULL,
1819d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1820d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1821d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1822f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                        NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827d4002b98SHong Zhang                                        /* 29*/ MatSetUp_SeqSELL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        NULL,
1832d4002b98SHong Zhang                                        /* 34*/ MatDuplicate_SeqSELL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        /* 39*/ NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839f4259b30SLisandro Dalcin                                        NULL,
1840d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1841d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1842f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1843d4002b98SHong Zhang                                        MatScale_SeqSELL,
1844d4002b98SHong Zhang                                        MatShift_SeqSELL,
1845f4259b30SLisandro Dalcin                                        NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852d4002b98SHong Zhang                                        /* 54*/ MatFDColoringCreate_SeqXAIJ,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        /* 59*/ NULL,
1858d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1859d4002b98SHong Zhang                                        MatView_SeqSELL,
1860f4259b30SLisandro Dalcin                                        NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        /* 69*/ NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1873d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1874f4259b30SLisandro Dalcin                                        NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        /*104*/ NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1912f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1913f4259b30SLisandro Dalcin                                        NULL,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
1917f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
1919f4259b30SLisandro Dalcin                                        NULL,
1920f4259b30SLisandro Dalcin                                        NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1923f4259b30SLisandro Dalcin                                        NULL,
1924f4259b30SLisandro Dalcin                                        NULL,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1928f4259b30SLisandro Dalcin                                        NULL,
1929f4259b30SLisandro Dalcin                                        NULL,
1930f4259b30SLisandro Dalcin                                        NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1933f4259b30SLisandro Dalcin                                        NULL,
1934f4259b30SLisandro Dalcin                                        NULL,
1935f4259b30SLisandro Dalcin                                        NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        /*139*/ NULL,
1938f4259b30SLisandro Dalcin                                        NULL,
1939f4259b30SLisandro Dalcin                                        NULL,
1940d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1941f4259b30SLisandro Dalcin                                        NULL,
1942d70f29a3SPierre Jolivet                                        /*144*/ NULL,
1943d70f29a3SPierre Jolivet                                        NULL,
1944d70f29a3SPierre Jolivet                                        NULL,
194599a7f59eSMark Adams                                        NULL,
194699a7f59eSMark Adams                                        NULL,
19477fb60732SBarry Smith                                        NULL,
1948dec0b466SHong Zhang                                        /*150*/ NULL,
1949dec0b466SHong Zhang                                        NULL};
1950d4002b98SHong Zhang 
1951d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1952d71ae5a4SJacob Faibussowitsch {
1953d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1954d4002b98SHong Zhang 
1955d4002b98SHong Zhang   PetscFunctionBegin;
195628b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1957d4002b98SHong Zhang 
1958d4002b98SHong Zhang   /* allocate space for values if not already there */
1959aa624791SPierre Jolivet   if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values));
1960d4002b98SHong Zhang 
1961d4002b98SHong Zhang   /* copy values over */
19629566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices]));
19633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1964d4002b98SHong Zhang }
1965d4002b98SHong Zhang 
1966d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1967d71ae5a4SJacob Faibussowitsch {
1968d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1969d4002b98SHong Zhang 
1970d4002b98SHong Zhang   PetscFunctionBegin;
197128b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
197228b400f6SJacob Faibussowitsch   PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");
19739566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices]));
19743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1975d4002b98SHong Zhang }
1976d4002b98SHong Zhang 
197707e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio)
197807e43b41SHong Zhang {
197907e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
198007e43b41SHong Zhang 
198107e43b41SHong Zhang   PetscFunctionBegin;
198207e43b41SHong Zhang   if (a->totalslices && a->sliidx[a->totalslices]) {
198307e43b41SHong Zhang     *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices];
198407e43b41SHong Zhang   } else {
198507e43b41SHong Zhang     *ratio = 0.0;
198607e43b41SHong Zhang   }
198707e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
198807e43b41SHong Zhang }
198907e43b41SHong Zhang 
199007e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth)
199107e43b41SHong Zhang {
199207e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
199307e43b41SHong Zhang   PetscInt     i, current_slicewidth;
199407e43b41SHong Zhang 
199507e43b41SHong Zhang   PetscFunctionBegin;
199607e43b41SHong Zhang   *slicewidth = 0;
199707e43b41SHong Zhang   for (i = 0; i < a->totalslices; i++) {
199807e43b41SHong Zhang     current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight;
199907e43b41SHong Zhang     if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth;
200007e43b41SHong Zhang   }
200107e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
200207e43b41SHong Zhang }
200307e43b41SHong Zhang 
200407e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth)
200507e43b41SHong Zhang {
200607e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
200707e43b41SHong Zhang 
200807e43b41SHong Zhang   PetscFunctionBegin;
200907e43b41SHong Zhang   *slicewidth = 0;
201007e43b41SHong Zhang   if (a->totalslices) { *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices; }
201107e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
201207e43b41SHong Zhang }
201307e43b41SHong Zhang 
201407e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight)
201507e43b41SHong Zhang {
201607e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
201707e43b41SHong Zhang 
201807e43b41SHong Zhang   PetscFunctionBegin;
201907e43b41SHong Zhang   if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS);
202007e43b41SHong Zhang   PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight);
202107e43b41SHong Zhang   a->sliceheight = sliceheight;
2022*4e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
2023*4e58db63SHong Zhang   PetscCheck(DEVICE_MEM_ALIGN % sliceheight == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "DEVICE_MEM_ALIGN is not divisible by the slice height %" PetscInt_FMT, sliceheight);
2024*4e58db63SHong Zhang #endif
202507e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
202607e43b41SHong Zhang }
202707e43b41SHong Zhang 
2028d4002b98SHong Zhang /*@C
202911a5261eSBarry Smith   MatSeqSELLRestoreArray - returns access to the array where the data for a `MATSEQSELL` matrix is stored obtained by `MatSeqSELLGetArray()`
2030d4002b98SHong Zhang 
2031d4002b98SHong Zhang   Not Collective
2032d4002b98SHong Zhang 
2033d4002b98SHong Zhang   Input Parameters:
203407e43b41SHong Zhang +  A - a `MATSEQSELL` matrix
203520f4b53cSBarry Smith -  array - pointer to the data
2036d4002b98SHong Zhang 
2037d4002b98SHong Zhang   Level: intermediate
2038d4002b98SHong Zhang 
203967be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()`
2040d4002b98SHong Zhang @*/
2041d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray(Mat A, PetscScalar **array)
2042d71ae5a4SJacob Faibussowitsch {
2043d4002b98SHong Zhang   PetscFunctionBegin;
2044cac4c232SBarry Smith   PetscUseMethod(A, "MatSeqSELLRestoreArray_C", (Mat, PetscScalar **), (A, array));
20453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2046d4002b98SHong Zhang }
2047d4002b98SHong Zhang 
204807e43b41SHong Zhang /*@C
204907e43b41SHong Zhang   MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix.
205007e43b41SHong Zhang 
205107e43b41SHong Zhang   Not Collective
205207e43b41SHong Zhang 
205307e43b41SHong Zhang   Input Parameter:
205407e43b41SHong Zhang .  A - a MATSEQSELL matrix
205507e43b41SHong Zhang 
205607e43b41SHong Zhang   Output Parameter:
205707e43b41SHong Zhang .  ratio - ratio of number of padded zeros to number of allocated elements
205807e43b41SHong Zhang 
205907e43b41SHong Zhang   Level: intermediate
206007e43b41SHong Zhang @*/
206107e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio)
206207e43b41SHong Zhang {
206307e43b41SHong Zhang   PetscFunctionBegin;
206407e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio));
206507e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
206607e43b41SHong Zhang }
206707e43b41SHong Zhang 
206807e43b41SHong Zhang /*@C
206907e43b41SHong Zhang   MatSeqSELLGetMaxSliceWidth - returns the maximum slice width.
207007e43b41SHong Zhang 
207107e43b41SHong Zhang   Not Collective
207207e43b41SHong Zhang 
207307e43b41SHong Zhang   Input Parameter:
207407e43b41SHong Zhang .  A - a MATSEQSELL matrix
207507e43b41SHong Zhang 
207607e43b41SHong Zhang   Output Parameter:
207707e43b41SHong Zhang .  slicewidth - maximum slice width
207807e43b41SHong Zhang 
207907e43b41SHong Zhang  Level: intermediate
208007e43b41SHong Zhang @*/
208107e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth)
208207e43b41SHong Zhang {
208307e43b41SHong Zhang   PetscFunctionBegin;
208407e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth));
208507e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
208607e43b41SHong Zhang }
208707e43b41SHong Zhang 
208807e43b41SHong Zhang /*@C
208907e43b41SHong Zhang   MatSeqSELLGetAvgSliceWidth - returns the average slice width.
209007e43b41SHong Zhang 
209107e43b41SHong Zhang   Not Collective
209207e43b41SHong Zhang 
209307e43b41SHong Zhang   Input Parameter:
209407e43b41SHong Zhang .  A - a MATSEQSELL matrix
209507e43b41SHong Zhang 
209607e43b41SHong Zhang   Output Parameter:
209707e43b41SHong Zhang .  slicewidth - average slice width
209807e43b41SHong Zhang 
209907e43b41SHong Zhang   Level: intermediate
210007e43b41SHong Zhang @*/
210107e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth)
210207e43b41SHong Zhang {
210307e43b41SHong Zhang   PetscFunctionBegin;
210407e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth));
210507e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
210607e43b41SHong Zhang }
210707e43b41SHong Zhang 
210807e43b41SHong Zhang /*@C
210907e43b41SHong Zhang   MatSeqSELLSetSliceHeight - sets the slice height.
211007e43b41SHong Zhang 
211107e43b41SHong Zhang   Not Collective
211207e43b41SHong Zhang 
211307e43b41SHong Zhang   Input Parameters:
211407e43b41SHong Zhang +  A - a MATSEQSELL matrix
211507e43b41SHong Zhang -  sliceheight - slice height
211607e43b41SHong Zhang 
211707e43b41SHong Zhang   Notes:
211807e43b41SHong Zhang   You cannot change the slice height once it have been set.
211907e43b41SHong Zhang 
212007e43b41SHong Zhang   The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called.
212107e43b41SHong Zhang 
212207e43b41SHong Zhang   Level: intermediate
212307e43b41SHong Zhang @*/
212407e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight)
212507e43b41SHong Zhang {
212607e43b41SHong Zhang   PetscFunctionBegin;
212707e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight));
212807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
212907e43b41SHong Zhang }
213007e43b41SHong Zhang 
213107e43b41SHong Zhang /*@C
213207e43b41SHong Zhang   MatSeqSELLGetVarSliceSize - returns the variance of the slice size.
213307e43b41SHong Zhang 
213407e43b41SHong Zhang   Not Collective
213507e43b41SHong Zhang 
213607e43b41SHong Zhang   Input Parameter:
213707e43b41SHong Zhang .  A - a MATSEQSELL matrix
213807e43b41SHong Zhang 
213907e43b41SHong Zhang   Output Parameter:
214007e43b41SHong Zhang .  variance - variance of the slice size
214107e43b41SHong Zhang 
214207e43b41SHong Zhang   Level: intermediate
214307e43b41SHong Zhang @*/
214407e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance)
214507e43b41SHong Zhang {
214607e43b41SHong Zhang   PetscFunctionBegin;
214707e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance));
214807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
214907e43b41SHong Zhang }
215007e43b41SHong Zhang 
21512d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
21522d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat);
21532d1451d4SHong Zhang #endif
21542d1451d4SHong Zhang 
2155d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
2156d71ae5a4SJacob Faibussowitsch {
2157d4002b98SHong Zhang   Mat_SeqSELL *b;
2158d4002b98SHong Zhang   PetscMPIInt  size;
2159d4002b98SHong Zhang 
2160d4002b98SHong Zhang   PetscFunctionBegin;
21619566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(citation, &cited));
21629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
216308401ef6SPierre Jolivet   PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1");
2164d4002b98SHong Zhang 
21654dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2166d4002b98SHong Zhang 
2167d4002b98SHong Zhang   B->data = (void *)b;
2168d4002b98SHong Zhang 
21699566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps)));
2170d4002b98SHong Zhang 
2171f4259b30SLisandro Dalcin   b->row                = NULL;
2172f4259b30SLisandro Dalcin   b->col                = NULL;
2173f4259b30SLisandro Dalcin   b->icol               = NULL;
2174d4002b98SHong Zhang   b->reallocs           = 0;
2175d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
2176d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
2177d4002b98SHong Zhang   b->nonew              = 0;
2178f4259b30SLisandro Dalcin   b->diag               = NULL;
2179f4259b30SLisandro Dalcin   b->solve_work         = NULL;
2180f4259b30SLisandro Dalcin   B->spptr              = NULL;
2181f4259b30SLisandro Dalcin   b->saved_values       = NULL;
2182f4259b30SLisandro Dalcin   b->idiag              = NULL;
2183f4259b30SLisandro Dalcin   b->mdiag              = NULL;
2184f4259b30SLisandro Dalcin   b->ssor_work          = NULL;
2185d4002b98SHong Zhang   b->omega              = 1.0;
2186d4002b98SHong Zhang   b->fshift             = 0.0;
2187d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
2188d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
218907e43b41SHong Zhang   b->sliceheight        = 0;
2190d4002b98SHong Zhang 
21919566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL));
21929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL));
21939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL));
21949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL));
21959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL));
21969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL));
21972d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_SeqSELL_SeqAIJ_C", MatConvert_SeqSELL_SeqAIJ));
21982d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
21992d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_SeqSELL_SeqSELLCUDA_C", MatConvert_SeqSELL_SeqSELLCUDA));
22002d1451d4SHong Zhang #endif
220107e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL));
220207e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL));
220307e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL));
220407e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL));
220507e43b41SHong Zhang 
220607e43b41SHong Zhang   PetscObjectOptionsBegin((PetscObject)B);
220707e43b41SHong Zhang   {
220807e43b41SHong Zhang     PetscInt  newsh = -1;
220907e43b41SHong Zhang     PetscBool flg;
221007e43b41SHong Zhang 
221107e43b41SHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg));
221207e43b41SHong Zhang     if (flg) { PetscCall(MatSeqSELLSetSliceHeight(B, newsh)); }
221307e43b41SHong Zhang   }
221407e43b41SHong Zhang   PetscOptionsEnd();
22153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2216d4002b98SHong Zhang }
2217d4002b98SHong Zhang 
2218d4002b98SHong Zhang /*
2219d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
2220d4002b98SHong Zhang  */
2221d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace)
2222d71ae5a4SJacob Faibussowitsch {
2223ed73aabaSBarry Smith   Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data;
2224d4002b98SHong Zhang   PetscInt     i, m                           = A->rmap->n;
2225d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2226d4002b98SHong Zhang 
2227d4002b98SHong Zhang   PetscFunctionBegin;
2228d4002b98SHong Zhang   C->factortype = A->factortype;
2229f4259b30SLisandro Dalcin   c->row        = NULL;
2230f4259b30SLisandro Dalcin   c->col        = NULL;
2231f4259b30SLisandro Dalcin   c->icol       = NULL;
2232d4002b98SHong Zhang   c->reallocs   = 0;
2233d4002b98SHong Zhang   C->assembled  = PETSC_TRUE;
2234d4002b98SHong Zhang 
22359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
22369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
2237d4002b98SHong Zhang 
223807e43b41SHong Zhang   PetscCall(PetscMalloc1(a->sliceheight * totalslices, &c->rlen));
22399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx));
2240d4002b98SHong Zhang 
2241d4002b98SHong Zhang   for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i];
2242d4002b98SHong Zhang   for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i];
2243d4002b98SHong Zhang 
2244d4002b98SHong Zhang   /* allocate the matrix space */
2245d4002b98SHong Zhang   if (mallocmatspace) {
22469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx));
2247d4002b98SHong Zhang 
2248d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2249d4002b98SHong Zhang 
2250d4002b98SHong Zhang     if (m > 0) {
22519566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat));
2252d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
22539566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat));
2254d4002b98SHong Zhang       } else {
22559566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(c->val, a->maxallocmat));
2256d4002b98SHong Zhang       }
2257d4002b98SHong Zhang     }
2258d4002b98SHong Zhang   }
2259d4002b98SHong Zhang 
2260d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
2261d4002b98SHong Zhang   c->roworiented       = a->roworiented;
2262d4002b98SHong Zhang   c->nonew             = a->nonew;
2263d4002b98SHong Zhang   if (a->diag) {
22649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &c->diag));
2265ad540459SPierre Jolivet     for (i = 0; i < m; i++) c->diag[i] = a->diag[i];
2266f4259b30SLisandro Dalcin   } else c->diag = NULL;
2267d4002b98SHong Zhang 
2268f4259b30SLisandro Dalcin   c->solve_work         = NULL;
2269f4259b30SLisandro Dalcin   c->saved_values       = NULL;
2270f4259b30SLisandro Dalcin   c->idiag              = NULL;
2271f4259b30SLisandro Dalcin   c->ssor_work          = NULL;
2272d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2273d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2274d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2275d4002b98SHong Zhang 
2276d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2277d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2278d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2279d4002b98SHong Zhang   c->nz           = a->nz;
2280d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2281d4002b98SHong Zhang 
2282d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2283d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2284d4002b98SHong Zhang 
22859566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
22863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2287d4002b98SHong Zhang }
2288d4002b98SHong Zhang 
2289d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B)
2290d71ae5a4SJacob Faibussowitsch {
2291d4002b98SHong Zhang   PetscFunctionBegin;
22929566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
22939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
229448a46eb9SPierre Jolivet   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A));
22959566063dSJacob Faibussowitsch   PetscCall(MatSetType(*B, ((PetscObject)A)->type_name));
22969566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE));
22973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2298d4002b98SHong Zhang }
2299d4002b98SHong Zhang 
2300ed73aabaSBarry Smith /*MC
2301ed73aabaSBarry Smith    MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices,
2302ed73aabaSBarry Smith    based on the sliced Ellpack format
2303ed73aabaSBarry Smith 
230420f4b53cSBarry Smith    Options Database Key:
230511a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()`
2306ed73aabaSBarry Smith 
2307ed73aabaSBarry Smith    Level: beginner
2308ed73aabaSBarry Smith 
230967be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
2310ed73aabaSBarry Smith M*/
2311ed73aabaSBarry Smith 
2312ed73aabaSBarry Smith /*MC
2313ed73aabaSBarry Smith    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices.
2314ed73aabaSBarry Smith 
231511a5261eSBarry Smith    This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator,
231611a5261eSBarry Smith    and `MATMPISELL` otherwise.  As a result, for single process communicators,
231711a5261eSBarry Smith   `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported
2318ed73aabaSBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
2319ed73aabaSBarry Smith   the above preallocation routines for simplicity.
2320ed73aabaSBarry Smith 
232120f4b53cSBarry Smith    Options Database Key:
2322ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
2323ed73aabaSBarry Smith 
2324ed73aabaSBarry Smith   Level: beginner
2325ed73aabaSBarry Smith 
2326ed73aabaSBarry Smith   Notes:
2327ed73aabaSBarry Smith    This format is only supported for real scalars, double precision, and 32 bit indices (the defaults).
2328ed73aabaSBarry Smith 
2329ed73aabaSBarry Smith    It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of
2330ed73aabaSBarry Smith    non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement.
2331ed73aabaSBarry Smith 
2332ed73aabaSBarry Smith   Developer Notes:
2333ed73aabaSBarry Smith    On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance.
2334ed73aabaSBarry Smith 
2335ed73aabaSBarry Smith    The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8
2336ed73aabaSBarry Smith .vb
2337ed73aabaSBarry Smith                             (2 0  3 4)
2338ed73aabaSBarry Smith    Consider the matrix A =  (5 0  6 0)
2339ed73aabaSBarry Smith                             (0 0  7 8)
2340ed73aabaSBarry Smith                             (0 0  9 9)
2341ed73aabaSBarry Smith 
2342ed73aabaSBarry Smith    symbolically the Ellpack format can be written as
2343ed73aabaSBarry Smith 
2344ed73aabaSBarry Smith         (2 3 4 |)           (0 2 3 |)
2345ed73aabaSBarry Smith    v =  (5 6 0 |)  colidx = (0 2 2 |)
2346ed73aabaSBarry Smith         --------            ---------
2347ed73aabaSBarry Smith         (7 8 |)             (2 3 |)
2348ed73aabaSBarry Smith         (9 9 |)             (2 3 |)
2349ed73aabaSBarry Smith 
2350ed73aabaSBarry Smith     The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case).
2351ed73aabaSBarry Smith     Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and
2352ed73aabaSBarry Smith     zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice.
2353ed73aabaSBarry Smith 
2354ed73aabaSBarry Smith     The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9)  and for colidx is (0 0 2 2 3 2 2 2 3 3)
2355ed73aabaSBarry Smith 
2356ed73aabaSBarry Smith .ve
2357ed73aabaSBarry Smith 
2358ed73aabaSBarry Smith       See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance.
2359ed73aabaSBarry Smith 
2360ed73aabaSBarry Smith  References:
2361606c0280SSatish Balay . * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512},
2362ed73aabaSBarry Smith    Proceedings of the 47th International Conference on Parallel Processing, 2018.
2363ed73aabaSBarry Smith 
236467be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
2365ed73aabaSBarry Smith M*/
2366ed73aabaSBarry Smith 
2367d4002b98SHong Zhang /*@C
236811a5261eSBarry Smith        MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format.
2369d4002b98SHong Zhang 
23702ef1f0ffSBarry Smith  Collective
2371d4002b98SHong Zhang 
2372d4002b98SHong Zhang  Input Parameters:
237311a5261eSBarry Smith +  comm - MPI communicator, set to `PETSC_COMM_SELF`
2374d4002b98SHong Zhang .  m - number of rows
2375d4002b98SHong Zhang .  n - number of columns
237620f4b53cSBarry Smith .  rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided
237720f4b53cSBarry Smith -  rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL
2378d4002b98SHong Zhang 
2379d4002b98SHong Zhang  Output Parameter:
2380d4002b98SHong Zhang .  A - the matrix
2381d4002b98SHong Zhang 
238220f4b53cSBarry Smith  Level: intermediate
238320f4b53cSBarry Smith 
238420f4b53cSBarry Smith  Notes:
238511a5261eSBarry Smith  It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2386f6f02116SRichard Tran Mills  MatXXXXSetPreallocation() paradigm instead of this routine directly.
238711a5261eSBarry Smith  [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`]
2388d4002b98SHong Zhang 
238920f4b53cSBarry Smith  Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
239020f4b53cSBarry Smith  Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
239120f4b53cSBarry Smith  allocation.
2392d4002b98SHong Zhang 
239367be906fSBarry Smith  .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL`
2394d4002b98SHong Zhang  @*/
239520f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A)
2396d71ae5a4SJacob Faibussowitsch {
2397d4002b98SHong Zhang   PetscFunctionBegin;
23989566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
23999566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, m, n));
24009566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A, MATSEQSELL));
240120f4b53cSBarry Smith   PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen));
24023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2403d4002b98SHong Zhang }
2404d4002b98SHong Zhang 
2405d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg)
2406d71ae5a4SJacob Faibussowitsch {
2407d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data;
2408d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2409d4002b98SHong Zhang 
2410d4002b98SHong Zhang   PetscFunctionBegin;
2411d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2412d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2413d4002b98SHong Zhang     *flg = PETSC_FALSE;
24143ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2415d4002b98SHong Zhang   }
2416d4002b98SHong Zhang   /* if the a->colidx are the same */
24179566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg));
24183ba16761SJacob Faibussowitsch   if (!*flg) PetscFunctionReturn(PETSC_SUCCESS);
2419d4002b98SHong Zhang   /* if a->val are the same */
24209566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg));
24213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2422d4002b98SHong Zhang }
2423d4002b98SHong Zhang 
2424d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2425d71ae5a4SJacob Faibussowitsch {
2426d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2427d4002b98SHong Zhang 
2428d4002b98SHong Zhang   PetscFunctionBegin;
2429d4002b98SHong Zhang   a->idiagvalid = PETSC_FALSE;
24303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2431d4002b98SHong Zhang }
2432d4002b98SHong Zhang 
2433d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A)
2434d71ae5a4SJacob Faibussowitsch {
2435d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2436d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2437d4002b98SHong Zhang   PetscInt     i;
2438d4002b98SHong Zhang   PetscScalar *val = a->val;
2439d4002b98SHong Zhang 
2440d4002b98SHong Zhang   PetscFunctionBegin;
24412d1451d4SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) { val[i] = PetscConj(val[i]); }
24422d1451d4SHong Zhang   #if defined(PETSC_HAVE_CUDA)
24432d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
24442d1451d4SHong Zhang   #endif
2445d4002b98SHong Zhang #else
2446d4002b98SHong Zhang   PetscFunctionBegin;
2447d4002b98SHong Zhang #endif
24483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2449d4002b98SHong Zhang }
2450