1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8ed73aabaSBarry Smith 9ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE; 10ed73aabaSBarry Smith static const char citation[] = 11ed73aabaSBarry Smith "@inproceedings{ZhangELLPACK2018,\n" 12ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n" 13ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n" 14ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n" 15ed73aabaSBarry Smith " year = 2018\n" 16ed73aabaSBarry Smith "}\n"; 17ed73aabaSBarry Smith 185f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 194243e2ceSHong Zhang 20d4002b98SHong Zhang #include <immintrin.h> 21d4002b98SHong Zhang 22d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 23d4002b98SHong Zhang #define _MM_SCALE_8 8 24d4002b98SHong Zhang #endif 25d4002b98SHong Zhang 26d4002b98SHong Zhang #if defined(__AVX512F__) 27d4002b98SHong Zhang /* these do not work 28d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 29d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 30d4002b98SHong Zhang */ 31d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 32d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 33ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const*)acolidx); \ 34ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 35d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 36a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y) 375f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 38a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 39ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 40ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const*)acolidx); /* SSE2 */ \ 41a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \ 42a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x,vec_vals,vec_y) 43d4002b98SHong Zhang #endif 44d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 45d4002b98SHong Zhang 46d4002b98SHong Zhang /*@C 47d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 48d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 49d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 50d4002b98SHong Zhang during matrix assembly can be increased significantly. 51d4002b98SHong Zhang 52d083f849SBarry Smith Collective 53d4002b98SHong Zhang 54d4002b98SHong Zhang Input Parameters: 55d4002b98SHong Zhang + B - The matrix 56d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 57d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 58d4002b98SHong Zhang (possibly different for each row) or NULL 59d4002b98SHong Zhang 60d4002b98SHong Zhang Notes: 61d4002b98SHong Zhang If nnz is given then nz is ignored. 62d4002b98SHong Zhang 63d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 64d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 65d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 66d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 67d4002b98SHong Zhang 68d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 69d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 70d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 71d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 72d4002b98SHong Zhang 73d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 74d4002b98SHong Zhang entries or columns indices. 75d4002b98SHong Zhang 76c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 77c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 78d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 79d4002b98SHong Zhang 80d4002b98SHong Zhang Level: intermediate 81d4002b98SHong Zhang 82d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 83d4002b98SHong Zhang 84d4002b98SHong Zhang @*/ 85d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 86d4002b98SHong Zhang { 87d4002b98SHong Zhang PetscFunctionBegin; 88d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 89d4002b98SHong Zhang PetscValidType(B,1); 90*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen))); 91d4002b98SHong Zhang PetscFunctionReturn(0); 92d4002b98SHong Zhang } 93d4002b98SHong Zhang 94d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 95d4002b98SHong Zhang { 96d4002b98SHong Zhang Mat_SeqSELL *b; 97d4002b98SHong Zhang PetscInt i,j,totalslices; 98d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 99d4002b98SHong Zhang 100d4002b98SHong Zhang PetscFunctionBegin; 101d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 102d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 103d4002b98SHong Zhang skipallocation = PETSC_TRUE; 104d4002b98SHong Zhang maxallocrow = 0; 105d4002b98SHong Zhang } 106d4002b98SHong Zhang 107*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(B->rmap)); 108*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(B->cmap)); 109d4002b98SHong Zhang 110d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 111d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 1122c71b3e2SJacob Faibussowitsch PetscCheckFalse(maxallocrow < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %" PetscInt_FMT,maxallocrow); 113d4002b98SHong Zhang if (rlen) { 114d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 1152c71b3e2SJacob Faibussowitsch PetscCheckFalse(rlen[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,rlen[i]); 1162c71b3e2SJacob Faibussowitsch PetscCheckFalse(rlen[i] > B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT,i,rlen[i],B->cmap->n); 117d4002b98SHong Zhang } 118d4002b98SHong Zhang } 119d4002b98SHong Zhang 120d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 121d4002b98SHong Zhang 122d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 123d4002b98SHong Zhang 124faa75363SBarry Smith totalslices = PetscCeilInt(B->rmap->n,8); 125d4002b98SHong Zhang b->totalslices = totalslices; 126d4002b98SHong Zhang if (!skipallocation) { 127*5f80ce2aSJacob Faibussowitsch if (B->rmap->n & 0x07) CHKERRQ(PetscInfo(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %" PetscInt_FMT ")\n",B->rmap->n)); 128d4002b98SHong Zhang 129d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 130*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(totalslices+1,&b->sliidx)); 131*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt))); 132d4002b98SHong Zhang } 133d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 134d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 135d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 136d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 137d4002b98SHong Zhang } else { 138d4002b98SHong Zhang maxallocrow = 0; 139d4002b98SHong Zhang b->sliidx[0] = 0; 140d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 141d4002b98SHong Zhang b->sliidx[i] = 0; 142d4002b98SHong Zhang for (j=0;j<8;j++) { 143d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 144d4002b98SHong Zhang } 145d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 146*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscIntSumError(b->sliidx[i-1],8*b->sliidx[i],&b->sliidx[i])); 147d4002b98SHong Zhang } 148d4002b98SHong Zhang /* last slice */ 149d4002b98SHong Zhang b->sliidx[totalslices] = 0; 150d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 151d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 152d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 153d4002b98SHong Zhang } 154d4002b98SHong Zhang 155d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 156d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 157*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqXSELLFreeSELL(B,&b->val,&b->colidx)); 158d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 159*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx)); 160*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)))); 161d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 162*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscCalloc1(8*totalslices,&b->rlen)); 163*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt))); 164d4002b98SHong Zhang 165d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 166d4002b98SHong Zhang b->free_val = PETSC_TRUE; 167d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 168d4002b98SHong Zhang } else { 169d4002b98SHong Zhang b->free_val = PETSC_FALSE; 170d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 171d4002b98SHong Zhang } 172d4002b98SHong Zhang 173d4002b98SHong Zhang b->nz = 0; 174d4002b98SHong Zhang b->maxallocrow = maxallocrow; 175d4002b98SHong Zhang b->rlenmax = maxallocrow; 176d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 177d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 178d4002b98SHong Zhang if (realalloc) { 179*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE)); 180d4002b98SHong Zhang } 181d4002b98SHong Zhang PetscFunctionReturn(0); 182d4002b98SHong Zhang } 183d4002b98SHong Zhang 1846108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1856108893eSStefano Zampini { 1866108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL*)A->data; 1876108893eSStefano Zampini PetscInt shift; 1886108893eSStefano Zampini 1896108893eSStefano Zampini PetscFunctionBegin; 1902c71b3e2SJacob Faibussowitsch PetscCheckFalse(row < 0 || row >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range",row); 1916108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1926108893eSStefano Zampini shift = a->sliidx[row>>3]+(row&0x07); 1936108893eSStefano Zampini if (!a->getrowcols) { 1946108893eSStefano Zampini 195*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals)); 1966108893eSStefano Zampini } 1976108893eSStefano Zampini if (idx) { 1986108893eSStefano Zampini PetscInt j; 1996108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j]; 2006108893eSStefano Zampini *idx = a->getrowcols; 2016108893eSStefano Zampini } 2026108893eSStefano Zampini if (v) { 2036108893eSStefano Zampini PetscInt j; 2046108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j]; 2056108893eSStefano Zampini *v = a->getrowvals; 2066108893eSStefano Zampini } 2076108893eSStefano Zampini PetscFunctionReturn(0); 2086108893eSStefano Zampini } 2096108893eSStefano Zampini 2106108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 2116108893eSStefano Zampini { 2126108893eSStefano Zampini PetscFunctionBegin; 2136108893eSStefano Zampini PetscFunctionReturn(0); 2146108893eSStefano Zampini } 2156108893eSStefano Zampini 216d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 217d4002b98SHong Zhang { 218d4002b98SHong Zhang Mat B; 219d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 220e3f1f374SStefano Zampini PetscInt i; 221d4002b98SHong Zhang 222d4002b98SHong Zhang PetscFunctionBegin; 223ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 224ad013a7bSRichard Tran Mills B = *newmat; 225*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatZeroEntries(B)); 226ad013a7bSRichard Tran Mills } else { 227*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A),&B)); 228*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 229*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(B,MATSEQAIJ)); 230*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqAIJSetPreallocation(B,0,a->rlen)); 231ad013a7bSRichard Tran Mills } 232d4002b98SHong Zhang 233e3f1f374SStefano Zampini for (i=0; i<A->rmap->n; i++) { 234e108cb99SStefano Zampini PetscInt nz = 0,*cols = NULL; 235e108cb99SStefano Zampini PetscScalar *vals = NULL; 236e3f1f374SStefano Zampini 237*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetRow_SeqSELL(A,i,&nz,&cols,&vals)); 238*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES)); 239*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals)); 240d4002b98SHong Zhang } 241e3f1f374SStefano Zampini 242*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 243*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 244d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 245d4002b98SHong Zhang 246d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 247*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatHeaderReplace(A,&B)); 248d4002b98SHong Zhang } else { 249d4002b98SHong Zhang *newmat = B; 250d4002b98SHong Zhang } 251d4002b98SHong Zhang PetscFunctionReturn(0); 252d4002b98SHong Zhang } 253d4002b98SHong Zhang 254d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 255d4002b98SHong Zhang 256d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 257d4002b98SHong Zhang { 258d4002b98SHong Zhang Mat B; 259d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 260d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 261d4002b98SHong Zhang const PetscInt *cols; 262d4002b98SHong Zhang const PetscScalar *vals; 263d4002b98SHong Zhang 264d4002b98SHong Zhang PetscFunctionBegin; 265ad013a7bSRichard Tran Mills 266ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 267ad013a7bSRichard Tran Mills B = *newmat; 268ad013a7bSRichard Tran Mills } else { 269d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 270*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(m,&rowlengths)); 271d4002b98SHong Zhang for (i=0; i<m; i++) { 272d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 273d4002b98SHong Zhang } 274d5e5b2e5SBarry Smith } 275d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 276d5e5b2e5SBarry Smith PetscBool eq; 277*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMemcmp(rowlengths,a->ilen,m*sizeof(PetscInt),&eq)); 2782c71b3e2SJacob Faibussowitsch PetscCheckFalse(!eq,PETSC_COMM_SELF,PETSC_ERR_PLIB,"SeqAIJ ilen array incorrect"); 279*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(rowlengths)); 280d5e5b2e5SBarry Smith rowlengths = a->ilen; 281d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 282*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A),&B)); 283*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(B,m,n,m,n)); 284*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(B,MATSEQSELL)); 285*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLSetPreallocation(B,0,rowlengths)); 286*5f80ce2aSJacob Faibussowitsch if (rowlengths != a->ilen) CHKERRQ(PetscFree(rowlengths)); 287ad013a7bSRichard Tran Mills } 288d4002b98SHong Zhang 289d4002b98SHong Zhang for (row=0; row<m; row++) { 290*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals)); 291*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues_SeqSELL(B,1,&row,ncols,cols,vals,INSERT_VALUES)); 292*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatRestoreRow_SeqAIJ(A,row,&ncols,(PetscInt**)&cols,(PetscScalar**)&vals)); 293d4002b98SHong Zhang } 294*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 295*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 296d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 297d4002b98SHong Zhang 298d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 299*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatHeaderReplace(A,&B)); 300d4002b98SHong Zhang } else { 301d4002b98SHong Zhang *newmat = B; 302d4002b98SHong Zhang } 303d4002b98SHong Zhang PetscFunctionReturn(0); 304d4002b98SHong Zhang } 305d4002b98SHong Zhang 306d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 307d4002b98SHong Zhang { 308d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 309d4002b98SHong Zhang PetscScalar *y; 310d4002b98SHong Zhang const PetscScalar *x; 311d4002b98SHong Zhang const MatScalar *aval=a->val; 312d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 313d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 3147285fed1SHong Zhang PetscInt i,j; 315d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 316d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 317d4002b98SHong Zhang __m256i vec_idx; 318d4002b98SHong Zhang __mmask8 mask; 319d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 320d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 3215f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 322a48a6482SHong Zhang __m128i vec_idx; 323a48a6482SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 324a48a6482SHong Zhang MatScalar yval; 325a48a6482SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 32621cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 327d4002b98SHong Zhang __m128d vec_x_tmp; 328d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 329d4002b98SHong Zhang MatScalar yval; 330d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 331d4002b98SHong Zhang #else 332d4002b98SHong Zhang PetscScalar sum[8]; 333d4002b98SHong Zhang #endif 334d4002b98SHong Zhang 335d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 336d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 337d4002b98SHong Zhang #endif 338d4002b98SHong Zhang 339d4002b98SHong Zhang PetscFunctionBegin; 340*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(xx,&x)); 341*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(yy,&y)); 342d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 343d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 344d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 345d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 346d4002b98SHong Zhang 347d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 348d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 349d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 350d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 351d4002b98SHong Zhang 35238efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 353d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 354d4002b98SHong Zhang case 3: 355d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 356d4002b98SHong Zhang acolidx += 8; aval += 8; 357d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 358d4002b98SHong Zhang acolidx += 8; aval += 8; 359d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 360d4002b98SHong Zhang acolidx += 8; aval += 8; 361d4002b98SHong Zhang j += 3; 362d4002b98SHong Zhang break; 363d4002b98SHong Zhang case 2: 364d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 365d4002b98SHong Zhang acolidx += 8; aval += 8; 366d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 367d4002b98SHong Zhang acolidx += 8; aval += 8; 368d4002b98SHong Zhang j += 2; 369d4002b98SHong Zhang break; 370d4002b98SHong Zhang case 1: 371d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 372d4002b98SHong Zhang acolidx += 8; aval += 8; 373d4002b98SHong Zhang j += 1; 374d4002b98SHong Zhang break; 375d4002b98SHong Zhang } 376d4002b98SHong Zhang #pragma novector 377d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 378d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 379d4002b98SHong Zhang acolidx += 8; aval += 8; 380d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 381d4002b98SHong Zhang acolidx += 8; aval += 8; 382d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 383d4002b98SHong Zhang acolidx += 8; aval += 8; 384d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 385d4002b98SHong Zhang acolidx += 8; aval += 8; 386d4002b98SHong Zhang } 387d4002b98SHong Zhang 388d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 389d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 390d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 391d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 392d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 393ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8*i],mask,vec_y); 394d4002b98SHong Zhang } else { 395ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8*i],vec_y); 396d4002b98SHong Zhang } 397d4002b98SHong Zhang } 3985f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 399a48a6482SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 400a48a6482SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 401a48a6482SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 402a48a6482SHong Zhang 403a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 404a48a6482SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 405a48a6482SHong Zhang rows_left = A->rmap->n - 8*i; 406a48a6482SHong Zhang for (r=0; r<rows_left; ++r) { 407a48a6482SHong Zhang yval = (MatScalar)0; 408a48a6482SHong Zhang row = 8*i + r; 409a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 410a48a6482SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 411a48a6482SHong Zhang y[row] = yval; 412a48a6482SHong Zhang } 413a48a6482SHong Zhang break; 414a48a6482SHong Zhang } 415a48a6482SHong Zhang 416a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 417a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 418a48a6482SHong Zhang 419a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 420a48a6482SHong Zhang #pragma novector 421a48a6482SHong Zhang #pragma unroll(2) 422a48a6482SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 423a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 424a48a6482SHong Zhang aval += 4; acolidx += 4; 425a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2); 426a48a6482SHong Zhang aval += 4; acolidx += 4; 427a48a6482SHong Zhang } 428a48a6482SHong Zhang 429ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8,vec_y); 430ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8+4,vec_y2); 431a48a6482SHong Zhang } 43221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 433d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 434d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 435d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 436d4002b98SHong Zhang 437d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 438d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 439d4002b98SHong Zhang 440d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 441d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 442d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 443d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 444d4002b98SHong Zhang yval = (MatScalar)0; 445d4002b98SHong Zhang row = 8*i + r; 446d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 447d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 448d4002b98SHong Zhang y[row] = yval; 449d4002b98SHong Zhang } 450d4002b98SHong Zhang break; 451d4002b98SHong Zhang } 452d4002b98SHong Zhang 453d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 454a48a6482SHong Zhang #pragma novector 455a48a6482SHong Zhang #pragma unroll(2) 4567285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 457d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 458d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 459d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 460d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 461d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 462d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 463d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 464d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 465d4002b98SHong Zhang aval += 4; 466d4002b98SHong Zhang 467d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 468d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 469d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 470d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 471d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 472d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 473d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 474d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 475d4002b98SHong Zhang aval += 4; 476d4002b98SHong Zhang } 477d4002b98SHong Zhang 478d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 479d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 480d4002b98SHong Zhang } 481d4002b98SHong Zhang #else 482d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 483d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 484d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 485d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 486d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 487d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 488d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 489d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 490d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 491d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 492d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 493d4002b98SHong Zhang } 494d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 495d4002b98SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 496d4002b98SHong Zhang } else { 4977285fed1SHong Zhang for (j=0; j<8; j++) y[8*i+j] = sum[j]; 498d4002b98SHong Zhang } 499d4002b98SHong Zhang } 500d4002b98SHong Zhang #endif 501d4002b98SHong Zhang 502*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*a->nz-a->nonzerorowcnt)); /* theoretical minimal FLOPs */ 503*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(xx,&x)); 504*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(yy,&y)); 505d4002b98SHong Zhang PetscFunctionReturn(0); 506d4002b98SHong Zhang } 507d4002b98SHong Zhang 508d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 509d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 510d4002b98SHong Zhang { 511d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 512d4002b98SHong Zhang PetscScalar *y,*z; 513d4002b98SHong Zhang const PetscScalar *x; 514d4002b98SHong Zhang const MatScalar *aval=a->val; 515d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 516d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 517d4002b98SHong Zhang PetscInt i,j; 518d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5197285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 520d4002b98SHong Zhang __m256i vec_idx; 521d4002b98SHong Zhang __mmask8 mask; 5227285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 5237285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 52421cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5257285fed1SHong Zhang __m128d vec_x_tmp; 5267285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 5277285fed1SHong Zhang MatScalar yval; 5287285fed1SHong Zhang PetscInt r,row,nnz_in_row; 529d4002b98SHong Zhang #else 530d4002b98SHong Zhang PetscScalar sum[8]; 531d4002b98SHong Zhang #endif 532d4002b98SHong Zhang 533d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 534d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 535d4002b98SHong Zhang #endif 536d4002b98SHong Zhang 537d4002b98SHong Zhang PetscFunctionBegin; 538*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(xx,&x)); 539*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayPair(yy,zz,&y,&z)); 540d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5417285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5427285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5437285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5447285fed1SHong Zhang 545d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 546d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 547ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y,mask,&y[8*i]); 5487285fed1SHong Zhang } else { 549ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8*i]); 5507285fed1SHong Zhang } 5517285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5527285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5537285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5547285fed1SHong Zhang 5557285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5567285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 5577285fed1SHong Zhang case 3: 5587285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5597285fed1SHong Zhang acolidx += 8; aval += 8; 5607285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5617285fed1SHong Zhang acolidx += 8; aval += 8; 5627285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5637285fed1SHong Zhang acolidx += 8; aval += 8; 5647285fed1SHong Zhang j += 3; 5657285fed1SHong Zhang break; 5667285fed1SHong Zhang case 2: 5677285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5687285fed1SHong Zhang acolidx += 8; aval += 8; 5697285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5707285fed1SHong Zhang acolidx += 8; aval += 8; 5717285fed1SHong Zhang j += 2; 5727285fed1SHong Zhang break; 5737285fed1SHong Zhang case 1: 5747285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5757285fed1SHong Zhang acolidx += 8; aval += 8; 5767285fed1SHong Zhang j += 1; 5777285fed1SHong Zhang break; 5787285fed1SHong Zhang } 5797285fed1SHong Zhang #pragma novector 5807285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 5817285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5827285fed1SHong Zhang acolidx += 8; aval += 8; 5837285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5847285fed1SHong Zhang acolidx += 8; aval += 8; 5857285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5867285fed1SHong Zhang acolidx += 8; aval += 8; 5877285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5887285fed1SHong Zhang acolidx += 8; aval += 8; 5897285fed1SHong Zhang } 5907285fed1SHong Zhang 5917285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 5927285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 5937285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 5947285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 595ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8*i],mask,vec_y); 596d4002b98SHong Zhang } else { 597ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8*i],vec_y); 598d4002b98SHong Zhang } 5997285fed1SHong Zhang } 60021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 6017285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 6027285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6037285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 6047285fed1SHong Zhang 6057285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6067285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6077285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6087285fed1SHong Zhang row = 8*i + r; 6097285fed1SHong Zhang yval = (MatScalar)0.0; 6107285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6117285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 6127285fed1SHong Zhang z[row] = y[row] + yval; 6137285fed1SHong Zhang } 6147285fed1SHong Zhang break; 6157285fed1SHong Zhang } 6167285fed1SHong Zhang 6177285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 6187285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 6197285fed1SHong Zhang 6207285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6217285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6227285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6237285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6247285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6257285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6267285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6277285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6287285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6297285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 6307285fed1SHong Zhang aval += 4; 6317285fed1SHong Zhang 6327285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6337285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6347285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6357285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6367285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6377285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6387285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6397285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 6407285fed1SHong Zhang aval += 4; 6417285fed1SHong Zhang } 6427285fed1SHong Zhang 6437285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 6447285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 6457285fed1SHong Zhang } 646d4002b98SHong Zhang #else 6477285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 6487285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 649d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 650d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 651d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 652d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 653d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 654d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 655d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 656d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 657d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 658d4002b98SHong Zhang } 6597285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6607285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 661d4002b98SHong Zhang } else { 6627285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 6637285fed1SHong Zhang } 664d4002b98SHong Zhang } 665d4002b98SHong Zhang #endif 666d4002b98SHong Zhang 667*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*a->nz)); 668*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(xx,&x)); 669*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayPair(yy,zz,&y,&z)); 670d4002b98SHong Zhang PetscFunctionReturn(0); 671d4002b98SHong Zhang } 672d4002b98SHong Zhang 673d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 674d4002b98SHong Zhang { 675d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 676d4002b98SHong Zhang PetscScalar *y; 677d4002b98SHong Zhang const PetscScalar *x; 678d4002b98SHong Zhang const MatScalar *aval=a->val; 679d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 6807285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 681d4002b98SHong Zhang 682d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 683d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 684d4002b98SHong Zhang #endif 685d4002b98SHong Zhang 686d4002b98SHong Zhang PetscFunctionBegin; 6879fc32365SStefano Zampini if (A->symmetric) { 688*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatMultAdd_SeqSELL(A,xx,zz,yy)); 6899fc32365SStefano Zampini PetscFunctionReturn(0); 6909fc32365SStefano Zampini } 691*5f80ce2aSJacob Faibussowitsch if (zz != yy) CHKERRQ(VecCopy(zz,yy)); 692*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(xx,&x)); 693*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(yy,&y)); 694d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 6957285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6967285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6977285fed1SHong Zhang row = 8*i + r; 6987285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6997285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 7007285fed1SHong Zhang } 7017285fed1SHong Zhang break; 7027285fed1SHong Zhang } 7037285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 7047285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 7057285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 7067285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 7077285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 7087285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 7097285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 7107285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 7117285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 712d4002b98SHong Zhang } 713d4002b98SHong Zhang } 714*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*a->sliidx[a->totalslices])); 715*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(xx,&x)); 716*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(yy,&y)); 717d4002b98SHong Zhang PetscFunctionReturn(0); 718d4002b98SHong Zhang } 719d4002b98SHong Zhang 720d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 721d4002b98SHong Zhang { 722d4002b98SHong Zhang PetscFunctionBegin; 7239fc32365SStefano Zampini if (A->symmetric) { 724*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatMult_SeqSELL(A,xx,yy)); 7259fc32365SStefano Zampini } else { 726*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSet(yy,0.0)); 727*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatMultTransposeAdd_SeqSELL(A,xx,yy,yy)); 7289fc32365SStefano Zampini } 729d4002b98SHong Zhang PetscFunctionReturn(0); 730d4002b98SHong Zhang } 731d4002b98SHong Zhang 732d4002b98SHong Zhang /* 733d4002b98SHong Zhang Checks for missing diagonals 734d4002b98SHong Zhang */ 735d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 736d4002b98SHong Zhang { 737d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 738d4002b98SHong Zhang PetscInt *diag,i; 739d4002b98SHong Zhang 740d4002b98SHong Zhang PetscFunctionBegin; 741d4002b98SHong Zhang *missing = PETSC_FALSE; 742d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 743d4002b98SHong Zhang *missing = PETSC_TRUE; 744d4002b98SHong Zhang if (d) *d = 0; 745*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n")); 746d4002b98SHong Zhang } else { 747d4002b98SHong Zhang diag = a->diag; 748d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 749d4002b98SHong Zhang if (diag[i] == -1) { 750d4002b98SHong Zhang *missing = PETSC_TRUE; 751d4002b98SHong Zhang if (d) *d = i; 752*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Matrix is missing diagonal number %" PetscInt_FMT "\n",i)); 753d4002b98SHong Zhang break; 754d4002b98SHong Zhang } 755d4002b98SHong Zhang } 756d4002b98SHong Zhang } 757d4002b98SHong Zhang PetscFunctionReturn(0); 758d4002b98SHong Zhang } 759d4002b98SHong Zhang 760d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 761d4002b98SHong Zhang { 762d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 763d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 764d4002b98SHong Zhang 765d4002b98SHong Zhang PetscFunctionBegin; 766d4002b98SHong Zhang if (!a->diag) { 767*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(m,&a->diag)); 768*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt))); 769d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 770d4002b98SHong Zhang } 771d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 772d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 773d4002b98SHong Zhang a->diag[i] = -1; 774d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 775d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 776d4002b98SHong Zhang a->diag[i] = shift+j*8; 777d4002b98SHong Zhang break; 778d4002b98SHong Zhang } 779d4002b98SHong Zhang } 780d4002b98SHong Zhang } 781d4002b98SHong Zhang PetscFunctionReturn(0); 782d4002b98SHong Zhang } 783d4002b98SHong Zhang 784d4002b98SHong Zhang /* 785d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 786d4002b98SHong Zhang */ 787d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 788d4002b98SHong Zhang { 789d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 790d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 791d4002b98SHong Zhang MatScalar *val = a->val; 792d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 793d4002b98SHong Zhang 794d4002b98SHong Zhang PetscFunctionBegin; 795d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 796*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatMarkDiagonal_SeqSELL(A)); 797d4002b98SHong Zhang diag = a->diag; 798d4002b98SHong Zhang if (!a->idiag) { 799*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work)); 800*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar))); 801d4002b98SHong Zhang val = a->val; 802d4002b98SHong Zhang } 803d4002b98SHong Zhang mdiag = a->mdiag; 804d4002b98SHong Zhang idiag = a->idiag; 805d4002b98SHong Zhang 806d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 807d4002b98SHong Zhang for (i=0; i<m; i++) { 808d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 809d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 810d4002b98SHong Zhang if (PetscRealPart(fshift)) { 811*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Zero diagonal on row %" PetscInt_FMT "\n",i)); 812d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 813d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 814d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 81598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %" PetscInt_FMT,i); 816d4002b98SHong Zhang } 817d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 818d4002b98SHong Zhang } 819*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(m)); 820d4002b98SHong Zhang } else { 821d4002b98SHong Zhang for (i=0; i<m; i++) { 822d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 823d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 824d4002b98SHong Zhang } 825*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*m)); 826d4002b98SHong Zhang } 827d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 828d4002b98SHong Zhang PetscFunctionReturn(0); 829d4002b98SHong Zhang } 830d4002b98SHong Zhang 831d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 832d4002b98SHong Zhang { 833d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 834d4002b98SHong Zhang 835d4002b98SHong Zhang PetscFunctionBegin; 836*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArrayzero(a->val,a->sliidx[a->totalslices])); 837*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLInvalidateDiagonal(A)); 838d4002b98SHong Zhang PetscFunctionReturn(0); 839d4002b98SHong Zhang } 840d4002b98SHong Zhang 841d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 842d4002b98SHong Zhang { 843d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 844d4002b98SHong Zhang 845d4002b98SHong Zhang PetscFunctionBegin; 846d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 847c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->n,A->cmap->n,a->nz); 848d4002b98SHong Zhang #endif 849*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqXSELLFreeSELL(A,&a->val,&a->colidx)); 850*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&a->row)); 851*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&a->col)); 852*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(a->diag)); 853*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(a->rlen)); 854*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(a->sliidx)); 855*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree3(a->idiag,a->mdiag,a->ssor_work)); 856*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(a->solve_work)); 857*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&a->icol)); 858*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(a->saved_values)); 859*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(a->getrowcols,a->getrowvals)); 860d4002b98SHong Zhang 861*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(A->data)); 862d4002b98SHong Zhang 863*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectChangeTypeName((PetscObject)A,NULL)); 864*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL)); 865*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL)); 866*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL)); 867d4002b98SHong Zhang PetscFunctionReturn(0); 868d4002b98SHong Zhang } 869d4002b98SHong Zhang 870d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 871d4002b98SHong Zhang { 872d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 873d4002b98SHong Zhang 874d4002b98SHong Zhang PetscFunctionBegin; 875d4002b98SHong Zhang switch (op) { 876d4002b98SHong Zhang case MAT_ROW_ORIENTED: 877d4002b98SHong Zhang a->roworiented = flg; 878d4002b98SHong Zhang break; 879d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 880d4002b98SHong Zhang a->keepnonzeropattern = flg; 881d4002b98SHong Zhang break; 882d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 883d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 884d4002b98SHong Zhang break; 885d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 886d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 887d4002b98SHong Zhang break; 888d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 889d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 890d4002b98SHong Zhang break; 891d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 892d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 893d4002b98SHong Zhang break; 8948c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 895d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 896d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 897071fcb05SBarry Smith case MAT_SORTED_FULL: 898*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 899d4002b98SHong Zhang break; 900d4002b98SHong Zhang case MAT_SPD: 901d4002b98SHong Zhang case MAT_SYMMETRIC: 902d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 903d4002b98SHong Zhang case MAT_HERMITIAN: 904d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 905d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 906d4002b98SHong Zhang break; 907d4002b98SHong Zhang default: 90898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 909d4002b98SHong Zhang } 910d4002b98SHong Zhang PetscFunctionReturn(0); 911d4002b98SHong Zhang } 912d4002b98SHong Zhang 913d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 914d4002b98SHong Zhang { 915d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 916d4002b98SHong Zhang PetscInt i,j,n,shift; 917d4002b98SHong Zhang PetscScalar *x,zero=0.0; 918d4002b98SHong Zhang 919d4002b98SHong Zhang PetscFunctionBegin; 920*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(v,&n)); 9212c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 922d4002b98SHong Zhang 923d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 924d4002b98SHong Zhang PetscInt *diag=a->diag; 925*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(v,&x)); 926d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 927*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(v,&x)); 928d4002b98SHong Zhang PetscFunctionReturn(0); 929d4002b98SHong Zhang } 930d4002b98SHong Zhang 931*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSet(v,zero)); 932*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(v,&x)); 933d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 934d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 935d4002b98SHong Zhang x[i] = 0; 936d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 937d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 938d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 939d4002b98SHong Zhang break; 940d4002b98SHong Zhang } 941d4002b98SHong Zhang } 942d4002b98SHong Zhang } 943*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(v,&x)); 944d4002b98SHong Zhang PetscFunctionReturn(0); 945d4002b98SHong Zhang } 946d4002b98SHong Zhang 947d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 948d4002b98SHong Zhang { 949d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 950d4002b98SHong Zhang const PetscScalar *l,*r; 951d4002b98SHong Zhang PetscInt i,j,m,n,row; 952d4002b98SHong Zhang 953d4002b98SHong Zhang PetscFunctionBegin; 954d4002b98SHong Zhang if (ll) { 955d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 956d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 957*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(ll,&m)); 9582c71b3e2SJacob Faibussowitsch PetscCheckFalse(m != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 959*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(ll,&l)); 960d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 961dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 962dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 963dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= l[8*i+row]; 964dab86139SHong Zhang } 965dab86139SHong Zhang } else { 966d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 967d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 968d4002b98SHong Zhang } 969d4002b98SHong Zhang } 970dab86139SHong Zhang } 971*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(ll,&l)); 972*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(a->nz)); 973d4002b98SHong Zhang } 974d4002b98SHong Zhang if (rr) { 975*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(rr,&n)); 9762c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 977*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(rr,&r)); 978d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 979dab86139SHong Zhang if (i == a->totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 980dab86139SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 981dab86139SHong Zhang if (row < (A->rmap->n & 0x07)) a->val[j] *= r[a->colidx[j]]; 982dab86139SHong Zhang } 983dab86139SHong Zhang } else { 984d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 985d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 986d4002b98SHong Zhang } 987d4002b98SHong Zhang } 988dab86139SHong Zhang } 989*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(rr,&r)); 990*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(a->nz)); 991d4002b98SHong Zhang } 992*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLInvalidateDiagonal(A)); 993d4002b98SHong Zhang PetscFunctionReturn(0); 994d4002b98SHong Zhang } 995d4002b98SHong Zhang 996d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 997d4002b98SHong Zhang { 998d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 999d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 1000d4002b98SHong Zhang PetscInt shift; 1001d4002b98SHong Zhang MatScalar *vp; 1002d4002b98SHong Zhang 1003d4002b98SHong Zhang PetscFunctionBegin; 100468aafef3SStefano Zampini for (k=0; k<m; k++) { /* loop over requested rows */ 1005d4002b98SHong Zhang row = im[k]; 1006d4002b98SHong Zhang if (row<0) continue; 10076bdcaf15SBarry Smith PetscCheck(row < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1008d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1009d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1010d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 101168aafef3SStefano Zampini for (l=0; l<n; l++) { /* loop over requested columns */ 1012d4002b98SHong Zhang col = in[l]; 1013d4002b98SHong Zhang if (col<0) continue; 10146bdcaf15SBarry Smith PetscCheck(col < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1015d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 1016d4002b98SHong Zhang while (high-low > 5) { 1017d4002b98SHong Zhang t = (low+high)/2; 1018d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1019d4002b98SHong Zhang else low = t; 1020d4002b98SHong Zhang } 1021d4002b98SHong Zhang for (i=low; i<high; i++) { 1022d4002b98SHong Zhang if (*(cp+8*i) > col) break; 1023d4002b98SHong Zhang if (*(cp+8*i) == col) { 1024d4002b98SHong Zhang *v++ = *(vp+8*i); 1025d4002b98SHong Zhang goto finished; 1026d4002b98SHong Zhang } 1027d4002b98SHong Zhang } 1028d4002b98SHong Zhang *v++ = 0.0; 1029d4002b98SHong Zhang finished:; 1030d4002b98SHong Zhang } 1031d4002b98SHong Zhang } 1032d4002b98SHong Zhang PetscFunctionReturn(0); 1033d4002b98SHong Zhang } 1034d4002b98SHong Zhang 1035d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 1036d4002b98SHong Zhang { 1037d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1038d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1039d4002b98SHong Zhang const char *name; 1040d4002b98SHong Zhang PetscViewerFormat format; 1041d4002b98SHong Zhang 1042d4002b98SHong Zhang PetscFunctionBegin; 1043*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerGetFormat(viewer,&format)); 1044d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1045d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1046d4002b98SHong Zhang /* 1047d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1048d4002b98SHong Zhang nofinalvalue = 1; 1049d4002b98SHong Zhang } 1050d4002b98SHong Zhang */ 1051*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1052*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n",m,A->cmap->n)); 1053*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %" PetscInt_FMT " \n",a->nz)); 1054d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1055*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",4);\n",a->nz+nofinalvalue)); 1056d4002b98SHong Zhang #else 1057*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"zzz = zeros(%" PetscInt_FMT ",3);\n",a->nz+nofinalvalue)); 1058d4002b98SHong Zhang #endif 1059*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"zzz = [\n")); 1060d4002b98SHong Zhang 1061d4002b98SHong Zhang for (i=0; i<m; i++) { 1062d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1063d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1064d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1065*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1066d4002b98SHong Zhang #else 1067*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j])); 1068d4002b98SHong Zhang #endif 1069d4002b98SHong Zhang } 1070d4002b98SHong Zhang } 1071d4002b98SHong Zhang /* 1072d4002b98SHong Zhang if (nofinalvalue) { 1073d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1074*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.)); 1075d4002b98SHong Zhang #else 1076*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0)); 1077d4002b98SHong Zhang #endif 1078d4002b98SHong Zhang } 1079d4002b98SHong Zhang */ 1080*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetName((PetscObject)A,&name)); 1081*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name)); 1082*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1083d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1084d4002b98SHong Zhang PetscFunctionReturn(0); 1085d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1086*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1087d4002b98SHong Zhang for (i=0; i<m; i++) { 1088*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1089d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1090d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1091d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1092d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1093*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1094d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1095*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]))); 1096d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1097*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]))); 1098d4002b98SHong Zhang } 1099d4002b98SHong Zhang #else 1100*5f80ce2aSJacob Faibussowitsch if (a->val[shift+8*j] != 0.0) CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j])); 1101d4002b98SHong Zhang #endif 1102d4002b98SHong Zhang } 1103*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"\n")); 1104d4002b98SHong Zhang } 1105*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1106d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1107d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1108d4002b98SHong Zhang PetscScalar value; 1109d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1110d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1111d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1112d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1113d4002b98SHong Zhang realonly = PETSC_FALSE; 1114d4002b98SHong Zhang break; 1115d4002b98SHong Zhang } 1116d4002b98SHong Zhang } 1117d4002b98SHong Zhang #endif 1118d4002b98SHong Zhang 1119*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1120d4002b98SHong Zhang for (i=0; i<m; i++) { 1121d4002b98SHong Zhang jcnt = 0; 1122d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1123d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1124d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1125d4002b98SHong Zhang value = a->val[cnt++]; 1126d4002b98SHong Zhang jcnt++; 1127d4002b98SHong Zhang } else { 1128d4002b98SHong Zhang value = 0.0; 1129d4002b98SHong Zhang } 1130d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1131d4002b98SHong Zhang if (realonly) { 1132*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value))); 1133d4002b98SHong Zhang } else { 1134*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value))); 1135d4002b98SHong Zhang } 1136d4002b98SHong Zhang #else 1137*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value)); 1138d4002b98SHong Zhang #endif 1139d4002b98SHong Zhang } 1140*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"\n")); 1141d4002b98SHong Zhang } 1142*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1143d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1144d4002b98SHong Zhang PetscInt fshift=1; 1145*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1146d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1147*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n")); 1148d4002b98SHong Zhang #else 1149*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n")); 1150d4002b98SHong Zhang #endif 1151*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz)); 1152d4002b98SHong Zhang for (i=0; i<m; i++) { 1153d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1154d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1155d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1156*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1157d4002b98SHong Zhang #else 1158*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j])); 1159d4002b98SHong Zhang #endif 1160d4002b98SHong Zhang } 1161d4002b98SHong Zhang } 1162*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 116368aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 116468aafef3SStefano Zampini for (i=0; i<a->totalslices; i++) { /* loop over slices */ 116568aafef3SStefano Zampini PetscInt row; 1166*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n",i,a->sliidx[i],a->sliidx[i+1])); 116768aafef3SStefano Zampini for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 116868aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 116968aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 1170*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]))); 117168aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1172*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]))); 117368aafef3SStefano Zampini } else { 1174*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]))); 117568aafef3SStefano Zampini } 117668aafef3SStefano Zampini #else 1177*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," %" PetscInt_FMT " %" PetscInt_FMT " %g\n",8*i+row,a->colidx[j],(double)a->val[j])); 117868aafef3SStefano Zampini #endif 117968aafef3SStefano Zampini } 118068aafef3SStefano Zampini } 1181d4002b98SHong Zhang } else { 1182*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1183d4002b98SHong Zhang if (A->factortype) { 1184d4002b98SHong Zhang for (i=0; i<m; i++) { 1185d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1186*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1187d4002b98SHong Zhang /* L part */ 1188d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1189d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1190d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1191*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]))); 1192d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1193*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])))); 1194d4002b98SHong Zhang } else { 1195*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]))); 1196d4002b98SHong Zhang } 1197d4002b98SHong Zhang #else 1198*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j])); 1199d4002b98SHong Zhang #endif 1200d4002b98SHong Zhang } 1201d4002b98SHong Zhang /* diagonal */ 1202d4002b98SHong Zhang j = a->diag[i]; 1203d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1204d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1205*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]))); 1206d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1207*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])))); 1208d4002b98SHong Zhang } else { 1209*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]))); 1210d4002b98SHong Zhang } 1211d4002b98SHong Zhang #else 1212*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)(1.0/a->val[j]))); 1213d4002b98SHong Zhang #endif 1214d4002b98SHong Zhang 1215d4002b98SHong Zhang /* U part */ 1216d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1217d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1218d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1219*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]))); 1220d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1221*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])))); 1222d4002b98SHong Zhang } else { 1223*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]))); 1224d4002b98SHong Zhang } 1225d4002b98SHong Zhang #else 1226*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[j],(double)a->val[j])); 1227d4002b98SHong Zhang #endif 1228d4002b98SHong Zhang } 1229*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"\n")); 1230d4002b98SHong Zhang } 1231d4002b98SHong Zhang } else { 1232d4002b98SHong Zhang for (i=0; i<m; i++) { 1233d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1234*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i)); 1235d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1236d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1237d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1238*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]))); 1239d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1240*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]))); 1241d4002b98SHong Zhang } else { 1242*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]))); 1243d4002b98SHong Zhang } 1244d4002b98SHong Zhang #else 1245*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j])); 1246d4002b98SHong Zhang #endif 1247d4002b98SHong Zhang } 1248*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"\n")); 1249d4002b98SHong Zhang } 1250d4002b98SHong Zhang } 1251*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1252d4002b98SHong Zhang } 1253*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerFlush(viewer)); 1254d4002b98SHong Zhang PetscFunctionReturn(0); 1255d4002b98SHong Zhang } 1256d4002b98SHong Zhang 1257d4002b98SHong Zhang #include <petscdraw.h> 1258d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1259d4002b98SHong Zhang { 1260d4002b98SHong Zhang Mat A=(Mat)Aa; 1261d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1262d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1263d4002b98SHong Zhang int color; 1264d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1265d4002b98SHong Zhang PetscViewer viewer; 1266d4002b98SHong Zhang PetscViewerFormat format; 1267d4002b98SHong Zhang PetscErrorCode ierr; 1268d4002b98SHong Zhang 1269d4002b98SHong Zhang PetscFunctionBegin; 1270*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer)); 1271*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerGetFormat(viewer,&format)); 1272*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr)); 1273d4002b98SHong Zhang 1274d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1275d4002b98SHong Zhang 1276d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1277d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1278d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1279d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1280d4002b98SHong Zhang for (i=0; i<m; i++) { 1281d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1282d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1283d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1284d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1285d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1286*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1287d4002b98SHong Zhang } 1288d4002b98SHong Zhang } 1289d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1290d4002b98SHong Zhang for (i=0; i<m; i++) { 1291d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1292d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1293d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1294d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1295d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1296*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1297d4002b98SHong Zhang } 1298d4002b98SHong Zhang } 1299d4002b98SHong Zhang color = PETSC_DRAW_RED; 1300d4002b98SHong Zhang for (i=0; i<m; i++) { 1301d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1302d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1303d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1304d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1305d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1306*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1307d4002b98SHong Zhang } 1308d4002b98SHong Zhang } 1309d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1310d4002b98SHong Zhang } else { 1311d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1312d4002b98SHong Zhang /* first determine max of all nonzero values */ 1313d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1314d4002b98SHong Zhang PetscInt count=0; 1315d4002b98SHong Zhang PetscDraw popup; 1316d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1317d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1318d4002b98SHong Zhang } 1319d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1320*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawGetPopup(draw,&popup)); 1321*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawScalePopup(popup,minv,maxv)); 1322d4002b98SHong Zhang 1323d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1324d4002b98SHong Zhang for (i=0; i<m; i++) { 1325d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1326d4002b98SHong Zhang y_l = m - i - 1.0; 1327d4002b98SHong Zhang y_r = y_l + 1.0; 1328d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1329d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1330d4002b98SHong Zhang x_r = x_l + 1.0; 1331d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1332*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color)); 1333d4002b98SHong Zhang count++; 1334d4002b98SHong Zhang } 1335d4002b98SHong Zhang } 1336d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1337d4002b98SHong Zhang } 1338d4002b98SHong Zhang PetscFunctionReturn(0); 1339d4002b98SHong Zhang } 1340d4002b98SHong Zhang 1341d4002b98SHong Zhang #include <petscdraw.h> 1342d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1343d4002b98SHong Zhang { 1344d4002b98SHong Zhang PetscDraw draw; 1345d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1346d4002b98SHong Zhang PetscBool isnull; 1347d4002b98SHong Zhang 1348d4002b98SHong Zhang PetscFunctionBegin; 1349*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerDrawGetDraw(viewer,0,&draw)); 1350*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawIsNull(draw,&isnull)); 1351d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1352d4002b98SHong Zhang 1353d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1354d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1355*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawSetCoordinates(draw,xl,yl,xr,yr)); 1356*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer)); 1357*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A)); 1358*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL)); 1359*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawSave(draw)); 1360d4002b98SHong Zhang PetscFunctionReturn(0); 1361d4002b98SHong Zhang } 1362d4002b98SHong Zhang 1363d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1364d4002b98SHong Zhang { 1365d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1366d4002b98SHong Zhang 1367d4002b98SHong Zhang PetscFunctionBegin; 1368*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 1369*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 1370*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 1371d4002b98SHong Zhang if (iascii) { 1372*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatView_SeqSELL_ASCII(A,viewer)); 1373d4002b98SHong Zhang } else if (isbinary) { 1374*5f80ce2aSJacob Faibussowitsch /* CHKERRQ(MatView_SeqSELL_Binary(A,viewer)); */ 1375d4002b98SHong Zhang } else if (isdraw) { 1376*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatView_SeqSELL_Draw(A,viewer)); 1377d4002b98SHong Zhang } 1378d4002b98SHong Zhang PetscFunctionReturn(0); 1379d4002b98SHong Zhang } 1380d4002b98SHong Zhang 1381d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1382d4002b98SHong Zhang { 1383d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1384d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1385d4002b98SHong Zhang MatScalar *vp; 1386d4002b98SHong Zhang 1387d4002b98SHong Zhang PetscFunctionBegin; 1388d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1389d4002b98SHong Zhang /* To do: compress out the unused elements */ 1390*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatMarkDiagonal_SeqSELL(A)); 1391*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz)); 1392*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n",a->reallocs)); 1393*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Maximum nonzeros in any row is %" PetscInt_FMT "\n",a->rlenmax)); 1394d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1395d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1396d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1397d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1398d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1399d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1400d4002b98SHong Zhang row = 8*i + row_in_slice; 1401d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1402d4002b98SHong Zhang /* 1403d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1404d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1405d4002b98SHong Zhang */ 1406d4002b98SHong Zhang lastcol = 0; 1407d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1408d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1409d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1410d4002b98SHong Zhang for (j=1;j<8;j++) { 1411d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1412d4002b98SHong Zhang lastcol = cp[j]; 1413d4002b98SHong Zhang break; 1414d4002b98SHong Zhang } 1415d4002b98SHong Zhang } 1416d4002b98SHong Zhang } else { 1417d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1418d4002b98SHong Zhang } 1419d4002b98SHong Zhang 1420d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1421d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1422d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1423d4002b98SHong Zhang } 1424d4002b98SHong Zhang } 1425d4002b98SHong Zhang } 1426d4002b98SHong Zhang 1427d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1428d4002b98SHong Zhang a->reallocs = 0; 1429d4002b98SHong Zhang 1430*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLInvalidateDiagonal(A)); 1431d4002b98SHong Zhang PetscFunctionReturn(0); 1432d4002b98SHong Zhang } 1433d4002b98SHong Zhang 1434d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1435d4002b98SHong Zhang { 1436d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1437d4002b98SHong Zhang 1438d4002b98SHong Zhang PetscFunctionBegin; 1439d4002b98SHong Zhang info->block_size = 1.0; 14403966268fSBarry Smith info->nz_allocated = a->maxallocmat; 14413966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 14423966268fSBarry Smith info->nz_unneeded = (a->maxallocmat-a->sliidx[a->totalslices]); 14433966268fSBarry Smith info->assemblies = A->num_ass; 14443966268fSBarry Smith info->mallocs = A->info.mallocs; 1445d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1446d4002b98SHong Zhang if (A->factortype) { 1447d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1448d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1449d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1450d4002b98SHong Zhang } else { 1451d4002b98SHong Zhang info->fill_ratio_given = 0; 1452d4002b98SHong Zhang info->fill_ratio_needed = 0; 1453d4002b98SHong Zhang info->factor_mallocs = 0; 1454d4002b98SHong Zhang } 1455d4002b98SHong Zhang PetscFunctionReturn(0); 1456d4002b98SHong Zhang } 1457d4002b98SHong Zhang 1458d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1459d4002b98SHong Zhang { 1460d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1461d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1462d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1463d4002b98SHong Zhang MatScalar *vp,value; 1464d4002b98SHong Zhang 1465d4002b98SHong Zhang PetscFunctionBegin; 1466d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1467d4002b98SHong Zhang row = im[k]; 1468d4002b98SHong Zhang if (row < 0) continue; 14696bdcaf15SBarry Smith PetscCheck(row < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->n-1); 1470d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1471d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1472d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1473d4002b98SHong Zhang nrow = a->rlen[row]; 1474d4002b98SHong Zhang low = 0; 1475d4002b98SHong Zhang high = nrow; 1476d4002b98SHong Zhang 1477d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1478d4002b98SHong Zhang col = in[l]; 1479d4002b98SHong Zhang if (col<0) continue; 14806bdcaf15SBarry Smith PetscCheck(col < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT,col,A->cmap->n-1); 1481d4002b98SHong Zhang if (a->roworiented) { 1482d4002b98SHong Zhang value = v[l+k*n]; 1483d4002b98SHong Zhang } else { 1484d4002b98SHong Zhang value = v[k+l*m]; 1485d4002b98SHong Zhang } 1486d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1487d4002b98SHong Zhang 1488ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */ 1489d4002b98SHong Zhang if (col <= lastcol) low = 0; 1490d4002b98SHong Zhang else high = nrow; 1491d4002b98SHong Zhang lastcol = col; 1492d4002b98SHong Zhang while (high-low > 5) { 1493d4002b98SHong Zhang t = (low+high)/2; 1494d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1495d4002b98SHong Zhang else low = t; 1496d4002b98SHong Zhang } 1497d4002b98SHong Zhang for (i=low; i<high; i++) { 1498d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1499d4002b98SHong Zhang if (*(cp+i*8) == col) { 1500d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1501d4002b98SHong Zhang else *(vp+i*8) = value; 1502d4002b98SHong Zhang low = i + 1; 1503d4002b98SHong Zhang goto noinsert; 1504d4002b98SHong Zhang } 1505d4002b98SHong Zhang } 1506d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1507d4002b98SHong Zhang if (nonew == 1) goto noinsert; 15082c71b3e2SJacob Faibussowitsch PetscCheckFalse(nonew == -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1509d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1510d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1511d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1512d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1513d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1514d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1515d4002b98SHong Zhang } 1516d4002b98SHong Zhang a->rlen[row]++; 1517d4002b98SHong Zhang *(cp+i*8) = col; 1518d4002b98SHong Zhang *(vp+i*8) = value; 1519d4002b98SHong Zhang a->nz++; 1520d4002b98SHong Zhang A->nonzerostate++; 1521d4002b98SHong Zhang low = i+1; high++; nrow++; 1522d4002b98SHong Zhang noinsert:; 1523d4002b98SHong Zhang } 1524d4002b98SHong Zhang a->rlen[row] = nrow; 1525d4002b98SHong Zhang } 1526d4002b98SHong Zhang PetscFunctionReturn(0); 1527d4002b98SHong Zhang } 1528d4002b98SHong Zhang 1529d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1530d4002b98SHong Zhang { 1531d4002b98SHong Zhang PetscFunctionBegin; 1532d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1533d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1534d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1535d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1536d4002b98SHong Zhang 15372c71b3e2SJacob Faibussowitsch PetscCheckFalse(a->sliidx[a->totalslices] != b->sliidx[b->totalslices],PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1538*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycpy(b->val,a->val,a->sliidx[a->totalslices])); 1539d4002b98SHong Zhang } else { 1540*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCopy_Basic(A,B,str)); 1541d4002b98SHong Zhang } 1542d4002b98SHong Zhang PetscFunctionReturn(0); 1543d4002b98SHong Zhang } 1544d4002b98SHong Zhang 1545d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1546d4002b98SHong Zhang { 1547d4002b98SHong Zhang PetscFunctionBegin; 1548*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,NULL)); 1549d4002b98SHong Zhang PetscFunctionReturn(0); 1550d4002b98SHong Zhang } 1551d4002b98SHong Zhang 1552d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1553d4002b98SHong Zhang { 1554d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1555d4002b98SHong Zhang 1556d4002b98SHong Zhang PetscFunctionBegin; 1557d4002b98SHong Zhang *array = a->val; 1558d4002b98SHong Zhang PetscFunctionReturn(0); 1559d4002b98SHong Zhang } 1560d4002b98SHong Zhang 1561d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1562d4002b98SHong Zhang { 1563d4002b98SHong Zhang PetscFunctionBegin; 1564d4002b98SHong Zhang PetscFunctionReturn(0); 1565d4002b98SHong Zhang } 1566d4002b98SHong Zhang 1567d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1568d4002b98SHong Zhang { 1569d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1570d4002b98SHong Zhang PetscInt i; 1571d4002b98SHong Zhang MatScalar *aval=a->val; 1572d4002b98SHong Zhang 1573d4002b98SHong Zhang PetscFunctionBegin; 1574d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1575d4002b98SHong Zhang PetscFunctionReturn(0); 1576d4002b98SHong Zhang } 1577d4002b98SHong Zhang 1578d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1579d4002b98SHong Zhang { 1580d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1581d4002b98SHong Zhang PetscInt i; 1582d4002b98SHong Zhang MatScalar *aval=a->val; 1583d4002b98SHong Zhang 1584d4002b98SHong Zhang PetscFunctionBegin; 1585d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1586*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLInvalidateDiagonal(A)); 1587d4002b98SHong Zhang PetscFunctionReturn(0); 1588d4002b98SHong Zhang } 1589d4002b98SHong Zhang 1590d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1591d4002b98SHong Zhang { 1592d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1593d4002b98SHong Zhang MatScalar *aval=a->val; 1594d4002b98SHong Zhang PetscScalar oalpha=alpha; 1595d4002b98SHong Zhang PetscBLASInt one=1,size; 1596d4002b98SHong Zhang 1597d4002b98SHong Zhang PetscFunctionBegin; 1598*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(a->sliidx[a->totalslices],&size)); 1599d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1600*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(a->nz)); 1601*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLInvalidateDiagonal(inA)); 1602d4002b98SHong Zhang PetscFunctionReturn(0); 1603d4002b98SHong Zhang } 1604d4002b98SHong Zhang 1605d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1606d4002b98SHong Zhang { 1607d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1608d4002b98SHong Zhang 1609d4002b98SHong Zhang PetscFunctionBegin; 1610d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1611*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLSetPreallocation(Y,1,NULL)); 1612d4002b98SHong Zhang } 1613*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatShift_Basic(Y,a)); 1614d4002b98SHong Zhang PetscFunctionReturn(0); 1615d4002b98SHong Zhang } 1616d4002b98SHong Zhang 1617d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1618d4002b98SHong Zhang { 1619d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1620d4002b98SHong Zhang PetscScalar *x,sum,*t; 1621f4259b30SLisandro Dalcin const MatScalar *idiag=NULL,*mdiag; 1622d4002b98SHong Zhang const PetscScalar *b,*xb; 1623d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1624d4002b98SHong Zhang const PetscInt *diag; 1625d4002b98SHong Zhang 1626d4002b98SHong Zhang PetscFunctionBegin; 1627d4002b98SHong Zhang its = its*lits; 1628d4002b98SHong Zhang 1629d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1630*5f80ce2aSJacob Faibussowitsch if (!a->idiagvalid) CHKERRQ(MatInvertDiagonal_SeqSELL(A,omega,fshift)); 1631d4002b98SHong Zhang a->fshift = fshift; 1632d4002b98SHong Zhang a->omega = omega; 1633d4002b98SHong Zhang 1634d4002b98SHong Zhang diag = a->diag; 1635d4002b98SHong Zhang t = a->ssor_work; 1636d4002b98SHong Zhang idiag = a->idiag; 1637d4002b98SHong Zhang mdiag = a->mdiag; 1638d4002b98SHong Zhang 1639*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(xx,&x)); 1640*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(bb,&b)); 1641d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 16422c71b3e2SJacob Faibussowitsch PetscCheckFalse(flag == SOR_APPLY_UPPER,PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 16432c71b3e2SJacob Faibussowitsch PetscCheckFalse(flag == SOR_APPLY_LOWER,PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 16442c71b3e2SJacob Faibussowitsch PetscCheckFalse(flag & SOR_EISENSTAT,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1645d4002b98SHong Zhang 1646d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1647d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1648d4002b98SHong Zhang for (i=0; i<m; i++) { 1649d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1650d4002b98SHong Zhang sum = b[i]; 1651d4002b98SHong Zhang n = (diag[i]-shift)/8; 1652d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1653d4002b98SHong Zhang t[i] = sum; 1654d4002b98SHong Zhang x[i] = sum*idiag[i]; 1655d4002b98SHong Zhang } 1656d4002b98SHong Zhang xb = t; 1657*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(a->nz)); 1658d4002b98SHong Zhang } else xb = b; 1659d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1660d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1661d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1662d4002b98SHong Zhang sum = xb[i]; 1663d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1664d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1665d4002b98SHong Zhang if (xb == b) { 1666d4002b98SHong Zhang x[i] = sum*idiag[i]; 1667d4002b98SHong Zhang } else { 1668d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1669d4002b98SHong Zhang } 1670d4002b98SHong Zhang } 1671*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1672d4002b98SHong Zhang } 1673d4002b98SHong Zhang its--; 1674d4002b98SHong Zhang } 1675d4002b98SHong Zhang while (its--) { 1676d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1677d4002b98SHong Zhang for (i=0; i<m; i++) { 1678d4002b98SHong Zhang /* lower */ 1679d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1680d4002b98SHong Zhang sum = b[i]; 1681d4002b98SHong Zhang n = (diag[i]-shift)/8; 1682d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1683d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1684d4002b98SHong Zhang /* upper */ 1685d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1686d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1687d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1688d4002b98SHong Zhang } 1689d4002b98SHong Zhang xb = t; 1690*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*a->nz)); 1691d4002b98SHong Zhang } else xb = b; 1692d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1693d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1694d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1695d4002b98SHong Zhang sum = xb[i]; 1696d4002b98SHong Zhang if (xb == b) { 1697d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1698d4002b98SHong Zhang n = a->rlen[i]; 1699d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1700d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1701d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1702d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1703d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1704d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1705d4002b98SHong Zhang } 1706d4002b98SHong Zhang } 1707d4002b98SHong Zhang if (xb == b) { 1708*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*a->nz)); 1709d4002b98SHong Zhang } else { 1710*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1711d4002b98SHong Zhang } 1712d4002b98SHong Zhang } 1713d4002b98SHong Zhang } 1714*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(xx,&x)); 1715*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(bb,&b)); 1716d4002b98SHong Zhang PetscFunctionReturn(0); 1717d4002b98SHong Zhang } 1718d4002b98SHong Zhang 1719d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1720d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17216108893eSStefano Zampini MatGetRow_SeqSELL, 17226108893eSStefano Zampini MatRestoreRow_SeqSELL, 1723d4002b98SHong Zhang MatMult_SeqSELL, 1724d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1725d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1726d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1727f4259b30SLisandro Dalcin NULL, 1728f4259b30SLisandro Dalcin NULL, 1729f4259b30SLisandro Dalcin NULL, 1730f4259b30SLisandro Dalcin /* 10*/ NULL, 1731f4259b30SLisandro Dalcin NULL, 1732f4259b30SLisandro Dalcin NULL, 1733d4002b98SHong Zhang MatSOR_SeqSELL, 1734f4259b30SLisandro Dalcin NULL, 1735d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1736d4002b98SHong Zhang MatEqual_SeqSELL, 1737d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1738d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1739f4259b30SLisandro Dalcin NULL, 1740f4259b30SLisandro Dalcin /* 20*/ NULL, 1741d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1742d4002b98SHong Zhang MatSetOption_SeqSELL, 1743d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1744f4259b30SLisandro Dalcin /* 24*/ NULL, 1745f4259b30SLisandro Dalcin NULL, 1746f4259b30SLisandro Dalcin NULL, 1747f4259b30SLisandro Dalcin NULL, 1748f4259b30SLisandro Dalcin NULL, 1749d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1750f4259b30SLisandro Dalcin NULL, 1751f4259b30SLisandro Dalcin NULL, 1752f4259b30SLisandro Dalcin NULL, 1753f4259b30SLisandro Dalcin NULL, 1754d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1755f4259b30SLisandro Dalcin NULL, 1756f4259b30SLisandro Dalcin NULL, 1757f4259b30SLisandro Dalcin NULL, 1758f4259b30SLisandro Dalcin NULL, 1759f4259b30SLisandro Dalcin /* 39*/ NULL, 1760f4259b30SLisandro Dalcin NULL, 1761f4259b30SLisandro Dalcin NULL, 1762d4002b98SHong Zhang MatGetValues_SeqSELL, 1763d4002b98SHong Zhang MatCopy_SeqSELL, 1764f4259b30SLisandro Dalcin /* 44*/ NULL, 1765d4002b98SHong Zhang MatScale_SeqSELL, 1766d4002b98SHong Zhang MatShift_SeqSELL, 1767f4259b30SLisandro Dalcin NULL, 1768f4259b30SLisandro Dalcin NULL, 1769f4259b30SLisandro Dalcin /* 49*/ NULL, 1770f4259b30SLisandro Dalcin NULL, 1771f4259b30SLisandro Dalcin NULL, 1772f4259b30SLisandro Dalcin NULL, 1773f4259b30SLisandro Dalcin NULL, 1774d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1775f4259b30SLisandro Dalcin NULL, 1776f4259b30SLisandro Dalcin NULL, 1777f4259b30SLisandro Dalcin NULL, 1778f4259b30SLisandro Dalcin NULL, 1779f4259b30SLisandro Dalcin /* 59*/ NULL, 1780d4002b98SHong Zhang MatDestroy_SeqSELL, 1781d4002b98SHong Zhang MatView_SeqSELL, 1782f4259b30SLisandro Dalcin NULL, 1783f4259b30SLisandro Dalcin NULL, 1784f4259b30SLisandro Dalcin /* 64*/ NULL, 1785f4259b30SLisandro Dalcin NULL, 1786f4259b30SLisandro Dalcin NULL, 1787f4259b30SLisandro Dalcin NULL, 1788f4259b30SLisandro Dalcin NULL, 1789f4259b30SLisandro Dalcin /* 69*/ NULL, 1790f4259b30SLisandro Dalcin NULL, 1791f4259b30SLisandro Dalcin NULL, 1792f4259b30SLisandro Dalcin NULL, 1793f4259b30SLisandro Dalcin NULL, 1794f4259b30SLisandro Dalcin /* 74*/ NULL, 1795d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1796f4259b30SLisandro Dalcin NULL, 1797f4259b30SLisandro Dalcin NULL, 1798f4259b30SLisandro Dalcin NULL, 1799f4259b30SLisandro Dalcin /* 79*/ NULL, 1800f4259b30SLisandro Dalcin NULL, 1801f4259b30SLisandro Dalcin NULL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin /* 84*/ NULL, 1805f4259b30SLisandro Dalcin NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808f4259b30SLisandro Dalcin NULL, 1809f4259b30SLisandro Dalcin /* 89*/ NULL, 1810f4259b30SLisandro Dalcin NULL, 1811f4259b30SLisandro Dalcin NULL, 1812f4259b30SLisandro Dalcin NULL, 1813f4259b30SLisandro Dalcin NULL, 1814f4259b30SLisandro Dalcin /* 94*/ NULL, 1815f4259b30SLisandro Dalcin NULL, 1816f4259b30SLisandro Dalcin NULL, 1817f4259b30SLisandro Dalcin NULL, 1818f4259b30SLisandro Dalcin NULL, 1819f4259b30SLisandro Dalcin /* 99*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822d4002b98SHong Zhang MatConjugate_SeqSELL, 1823f4259b30SLisandro Dalcin NULL, 1824f4259b30SLisandro Dalcin /*104*/ NULL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829f4259b30SLisandro Dalcin /*109*/ NULL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1834f4259b30SLisandro Dalcin /*114*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837f4259b30SLisandro Dalcin NULL, 1838f4259b30SLisandro Dalcin NULL, 1839f4259b30SLisandro Dalcin /*119*/ NULL, 1840f4259b30SLisandro Dalcin NULL, 1841f4259b30SLisandro Dalcin NULL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin /*124*/ NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849f4259b30SLisandro Dalcin /*129*/ NULL, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin /*134*/ NULL, 1855f4259b30SLisandro Dalcin NULL, 1856f4259b30SLisandro Dalcin NULL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin /*139*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1863f4259b30SLisandro Dalcin NULL, 1864d70f29a3SPierre Jolivet /*144*/ NULL, 1865d70f29a3SPierre Jolivet NULL, 1866d70f29a3SPierre Jolivet NULL, 1867d70f29a3SPierre Jolivet NULL 1868d4002b98SHong Zhang }; 1869d4002b98SHong Zhang 1870d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1871d4002b98SHong Zhang { 1872d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1873d4002b98SHong Zhang 1874d4002b98SHong Zhang PetscFunctionBegin; 18752c71b3e2SJacob Faibussowitsch PetscCheckFalse(!a->nonew,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1876d4002b98SHong Zhang 1877d4002b98SHong Zhang /* allocate space for values if not already there */ 1878d4002b98SHong Zhang if (!a->saved_values) { 1879*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values)); 1880*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar))); 1881d4002b98SHong Zhang } 1882d4002b98SHong Zhang 1883d4002b98SHong Zhang /* copy values over */ 1884*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycpy(a->saved_values,a->val,a->sliidx[a->totalslices])); 1885d4002b98SHong Zhang PetscFunctionReturn(0); 1886d4002b98SHong Zhang } 1887d4002b98SHong Zhang 1888d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1889d4002b98SHong Zhang { 1890d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1891d4002b98SHong Zhang 1892d4002b98SHong Zhang PetscFunctionBegin; 18932c71b3e2SJacob Faibussowitsch PetscCheckFalse(!a->nonew,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 18942c71b3e2SJacob Faibussowitsch PetscCheckFalse(!a->saved_values,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1895*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycpy(a->val,a->saved_values,a->sliidx[a->totalslices])); 1896d4002b98SHong Zhang PetscFunctionReturn(0); 1897d4002b98SHong Zhang } 1898d4002b98SHong Zhang 1899d4002b98SHong Zhang /*@C 1900d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1901d4002b98SHong Zhang 1902d4002b98SHong Zhang Not Collective 1903d4002b98SHong Zhang 1904d4002b98SHong Zhang Input Parameters: 1905d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1906d4002b98SHong Zhang . array - pointer to the data 1907d4002b98SHong Zhang 1908d4002b98SHong Zhang Level: intermediate 1909d4002b98SHong Zhang 1910d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1911d4002b98SHong Zhang @*/ 1912d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1913d4002b98SHong Zhang { 1914d4002b98SHong Zhang PetscFunctionBegin; 1915*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array))); 1916d4002b98SHong Zhang PetscFunctionReturn(0); 1917d4002b98SHong Zhang } 1918d4002b98SHong Zhang 1919d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1920d4002b98SHong Zhang { 1921d4002b98SHong Zhang Mat_SeqSELL *b; 1922d4002b98SHong Zhang PetscMPIInt size; 1923d4002b98SHong Zhang 1924d4002b98SHong Zhang PetscFunctionBegin; 1925*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscCitationsRegister(citation,&cited)); 1926*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 19272c71b3e2SJacob Faibussowitsch PetscCheckFalse(size > 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1928d4002b98SHong Zhang 1929*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscNewLog(B,&b)); 1930d4002b98SHong Zhang 1931d4002b98SHong Zhang B->data = (void*)b; 1932d4002b98SHong Zhang 1933*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 1934d4002b98SHong Zhang 1935f4259b30SLisandro Dalcin b->row = NULL; 1936f4259b30SLisandro Dalcin b->col = NULL; 1937f4259b30SLisandro Dalcin b->icol = NULL; 1938d4002b98SHong Zhang b->reallocs = 0; 1939d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1940d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1941d4002b98SHong Zhang b->nonew = 0; 1942f4259b30SLisandro Dalcin b->diag = NULL; 1943f4259b30SLisandro Dalcin b->solve_work = NULL; 1944f4259b30SLisandro Dalcin B->spptr = NULL; 1945f4259b30SLisandro Dalcin b->saved_values = NULL; 1946f4259b30SLisandro Dalcin b->idiag = NULL; 1947f4259b30SLisandro Dalcin b->mdiag = NULL; 1948f4259b30SLisandro Dalcin b->ssor_work = NULL; 1949d4002b98SHong Zhang b->omega = 1.0; 1950d4002b98SHong Zhang b->fshift = 0.0; 1951d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1952d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1953d4002b98SHong Zhang 1954*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL)); 1955*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL)); 1956*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL)); 1957*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL)); 1958*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL)); 1959*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL)); 1960*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ)); 1961d4002b98SHong Zhang PetscFunctionReturn(0); 1962d4002b98SHong Zhang } 1963d4002b98SHong Zhang 1964d4002b98SHong Zhang /* 1965d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1966d4002b98SHong Zhang */ 1967d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1968d4002b98SHong Zhang { 1969ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL*)C->data,*a = (Mat_SeqSELL*)A->data; 1970d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1971d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1972d4002b98SHong Zhang 1973d4002b98SHong Zhang PetscFunctionBegin; 1974d4002b98SHong Zhang C->factortype = A->factortype; 1975f4259b30SLisandro Dalcin c->row = NULL; 1976f4259b30SLisandro Dalcin c->col = NULL; 1977f4259b30SLisandro Dalcin c->icol = NULL; 1978d4002b98SHong Zhang c->reallocs = 0; 1979d4002b98SHong Zhang C->assembled = PETSC_TRUE; 1980d4002b98SHong Zhang 1981*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutReference(A->rmap,&C->rmap)); 1982*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutReference(A->cmap,&C->cmap)); 1983d4002b98SHong Zhang 1984*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(8*totalslices,&c->rlen)); 1985*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt))); 1986*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(totalslices+1,&c->sliidx)); 1987*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt))); 1988d4002b98SHong Zhang 1989d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 1990d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 1991d4002b98SHong Zhang 1992d4002b98SHong Zhang /* allocate the matrix space */ 1993d4002b98SHong Zhang if (mallocmatspace) { 1994*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx)); 1995*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)))); 1996d4002b98SHong Zhang 1997d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 1998d4002b98SHong Zhang 1999d4002b98SHong Zhang if (m > 0) { 2000*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycpy(c->colidx,a->colidx,a->maxallocmat)); 2001d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 2002*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycpy(c->val,a->val,a->maxallocmat)); 2003d4002b98SHong Zhang } else { 2004*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArrayzero(c->val,a->maxallocmat)); 2005d4002b98SHong Zhang } 2006d4002b98SHong Zhang } 2007d4002b98SHong Zhang } 2008d4002b98SHong Zhang 2009d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2010d4002b98SHong Zhang c->roworiented = a->roworiented; 2011d4002b98SHong Zhang c->nonew = a->nonew; 2012d4002b98SHong Zhang if (a->diag) { 2013*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(m,&c->diag)); 2014*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt))); 2015d4002b98SHong Zhang for (i=0; i<m; i++) { 2016d4002b98SHong Zhang c->diag[i] = a->diag[i]; 2017d4002b98SHong Zhang } 2018f4259b30SLisandro Dalcin } else c->diag = NULL; 2019d4002b98SHong Zhang 2020f4259b30SLisandro Dalcin c->solve_work = NULL; 2021f4259b30SLisandro Dalcin c->saved_values = NULL; 2022f4259b30SLisandro Dalcin c->idiag = NULL; 2023f4259b30SLisandro Dalcin c->ssor_work = NULL; 2024d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2025d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2026d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2027d4002b98SHong Zhang 2028d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2029d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2030d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2031d4002b98SHong Zhang c->nz = a->nz; 2032d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2033d4002b98SHong Zhang 2034d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2035d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2036d4002b98SHong Zhang 2037*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist)); 2038d4002b98SHong Zhang PetscFunctionReturn(0); 2039d4002b98SHong Zhang } 2040d4002b98SHong Zhang 2041d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 2042d4002b98SHong Zhang { 2043d4002b98SHong Zhang PetscFunctionBegin; 2044*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A),B)); 2045*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n)); 2046d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 2047*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetBlockSizesFromMats(*B,A,A)); 2048d4002b98SHong Zhang } 2049*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(*B,((PetscObject)A)->type_name)); 2050*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE)); 2051d4002b98SHong Zhang PetscFunctionReturn(0); 2052d4002b98SHong Zhang } 2053d4002b98SHong Zhang 2054ed73aabaSBarry Smith /*MC 2055ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices, 2056ed73aabaSBarry Smith based on the sliced Ellpack format 2057ed73aabaSBarry Smith 2058ed73aabaSBarry Smith Options Database Keys: 2059ed73aabaSBarry Smith . -mat_type seqsell - sets the matrix type to "seqsell" during a call to MatSetFromOptions() 2060ed73aabaSBarry Smith 2061ed73aabaSBarry Smith Level: beginner 2062ed73aabaSBarry Smith 2063ed73aabaSBarry Smith .seealso: MatCreateSeqSell(), MATSELL, MATMPISELL, MATSEQAIJ, MATAIJ, MATMPIAIJ 2064ed73aabaSBarry Smith M*/ 2065ed73aabaSBarry Smith 2066ed73aabaSBarry Smith /*MC 2067ed73aabaSBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices. 2068ed73aabaSBarry Smith 2069ed73aabaSBarry Smith This matrix type is identical to MATSEQSELL when constructed with a single process communicator, 2070ed73aabaSBarry Smith and MATMPISELL otherwise. As a result, for single process communicators, 2071ed73aabaSBarry Smith MatSeqSELLSetPreallocation() is supported, and similarly MatMPISELLSetPreallocation() is supported 2072ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 2073ed73aabaSBarry Smith the above preallocation routines for simplicity. 2074ed73aabaSBarry Smith 2075ed73aabaSBarry Smith Options Database Keys: 2076ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 2077ed73aabaSBarry Smith 2078ed73aabaSBarry Smith Level: beginner 2079ed73aabaSBarry Smith 2080ed73aabaSBarry Smith Notes: 2081ed73aabaSBarry Smith This format is only supported for real scalars, double precision, and 32 bit indices (the defaults). 2082ed73aabaSBarry Smith 2083ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of 2084ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement. 2085ed73aabaSBarry Smith 2086ed73aabaSBarry Smith Developer Notes: 2087ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance. 2088ed73aabaSBarry Smith 2089ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8 2090ed73aabaSBarry Smith .vb 2091ed73aabaSBarry Smith (2 0 3 4) 2092ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0) 2093ed73aabaSBarry Smith (0 0 7 8) 2094ed73aabaSBarry Smith (0 0 9 9) 2095ed73aabaSBarry Smith 2096ed73aabaSBarry Smith symbolically the Ellpack format can be written as 2097ed73aabaSBarry Smith 2098ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |) 2099ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |) 2100ed73aabaSBarry Smith -------- --------- 2101ed73aabaSBarry Smith (7 8 |) (2 3 |) 2102ed73aabaSBarry Smith (9 9 |) (2 3 |) 2103ed73aabaSBarry Smith 2104ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case). 2105ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and 2106ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice. 2107ed73aabaSBarry Smith 2108ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3) 2109ed73aabaSBarry Smith 2110ed73aabaSBarry Smith .ve 2111ed73aabaSBarry Smith 2112ed73aabaSBarry Smith See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance. 2113ed73aabaSBarry Smith 2114ed73aabaSBarry Smith References: 2115606c0280SSatish Balay . * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}, 2116ed73aabaSBarry Smith Proceedings of the 47th International Conference on Parallel Processing, 2018. 2117ed73aabaSBarry Smith 2118ed73aabaSBarry Smith .seealso: MatCreateSeqSELL(), MatCreateSeqAIJ(), MatCreateSell(), MATSEQSELL, MATMPISELL, MATSEQAIJ, MATMPIAIJ, MATAIJ 2119ed73aabaSBarry Smith M*/ 2120ed73aabaSBarry Smith 2121d4002b98SHong Zhang /*@C 2122d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 2123d4002b98SHong Zhang 2124ed73aabaSBarry Smith Collective on comm 2125d4002b98SHong Zhang 2126d4002b98SHong Zhang Input Parameters: 2127d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2128d4002b98SHong Zhang . m - number of rows 2129d4002b98SHong Zhang . n - number of columns 2130d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2131d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2132d4002b98SHong Zhang (possibly different for each row) or NULL 2133d4002b98SHong Zhang 2134d4002b98SHong Zhang Output Parameter: 2135d4002b98SHong Zhang . A - the matrix 2136d4002b98SHong Zhang 2137d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2138f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 2139d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 2140d4002b98SHong Zhang 2141d4002b98SHong Zhang Notes: 2142d4002b98SHong Zhang If nnz is given then nz is ignored 2143d4002b98SHong Zhang 2144d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2145d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2146d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2147d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2148d4002b98SHong Zhang 2149d4002b98SHong Zhang Level: intermediate 2150d4002b98SHong Zhang 2151ed73aabaSBarry Smith .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatSeqSELLSetPreallocation(), MATSELL, MATSEQSELL, MATMPISELL 2152d4002b98SHong Zhang 2153d4002b98SHong Zhang @*/ 2154d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2155d4002b98SHong Zhang { 2156d4002b98SHong Zhang PetscFunctionBegin; 2157*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(comm,A)); 2158*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(*A,m,n,m,n)); 2159*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(*A,MATSEQSELL)); 2160*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen)); 2161d4002b98SHong Zhang PetscFunctionReturn(0); 2162d4002b98SHong Zhang } 2163d4002b98SHong Zhang 2164d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2165d4002b98SHong Zhang { 2166d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2167d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2168d4002b98SHong Zhang 2169d4002b98SHong Zhang PetscFunctionBegin; 2170d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2171d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2172d4002b98SHong Zhang *flg = PETSC_FALSE; 2173d4002b98SHong Zhang PetscFunctionReturn(0); 2174d4002b98SHong Zhang } 2175d4002b98SHong Zhang /* if the a->colidx are the same */ 2176*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycmp(a->colidx,b->colidx,a->sliidx[totalslices],flg)); 2177d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2178d4002b98SHong Zhang /* if a->val are the same */ 2179*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscArraycmp(a->val,b->val,a->sliidx[totalslices],flg)); 2180d4002b98SHong Zhang PetscFunctionReturn(0); 2181d4002b98SHong Zhang } 2182d4002b98SHong Zhang 2183d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2184d4002b98SHong Zhang { 2185d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2186d4002b98SHong Zhang 2187d4002b98SHong Zhang PetscFunctionBegin; 2188d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2189d4002b98SHong Zhang PetscFunctionReturn(0); 2190d4002b98SHong Zhang } 2191d4002b98SHong Zhang 2192d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2193d4002b98SHong Zhang { 2194d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2195d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2196d4002b98SHong Zhang PetscInt i; 2197d4002b98SHong Zhang PetscScalar *val = a->val; 2198d4002b98SHong Zhang 2199d4002b98SHong Zhang PetscFunctionBegin; 2200d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2201d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2202d4002b98SHong Zhang } 2203d4002b98SHong Zhang #else 2204d4002b98SHong Zhang PetscFunctionBegin; 2205d4002b98SHong Zhang #endif 2206d4002b98SHong Zhang PetscFunctionReturn(0); 2207d4002b98SHong Zhang } 2208