1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) 9d4002b98SHong Zhang #include <immintrin.h> 10d4002b98SHong Zhang 11d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 12d4002b98SHong Zhang #define _MM_SCALE_8 8 13d4002b98SHong Zhang #endif 14d4002b98SHong Zhang 15d4002b98SHong Zhang #if defined(__AVX512F__) 16d4002b98SHong Zhang /* these do not work 17d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 18d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 19d4002b98SHong Zhang */ 20d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 21d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 22d4002b98SHong Zhang vec_idx = _mm256_load_si256((__m256i const*)acolidx); \ 23d4002b98SHong Zhang vec_vals = _mm512_load_pd(aval); \ 24d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 25a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y) 26a48a6482SHong Zhang #elif defined(__AVX2__) 27a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 28a48a6482SHong Zhang vec_vals = _mm256_load_pd(aval); \ 29a48a6482SHong Zhang vec_idx = _mm_load_si128((__m128i const*)acolidx); /* SSE2 */ \ 30a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \ 31a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x,vec_vals,vec_y) 32d4002b98SHong Zhang #endif 33d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 34d4002b98SHong Zhang 35d4002b98SHong Zhang /*@C 36d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 37d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 38d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 39d4002b98SHong Zhang during matrix assembly can be increased significantly. 40d4002b98SHong Zhang 41d4002b98SHong Zhang Collective on MPI_Comm 42d4002b98SHong Zhang 43d4002b98SHong Zhang Input Parameters: 44d4002b98SHong Zhang + B - The matrix 45d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 46d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 47d4002b98SHong Zhang (possibly different for each row) or NULL 48d4002b98SHong Zhang 49d4002b98SHong Zhang Notes: 50d4002b98SHong Zhang If nnz is given then nz is ignored. 51d4002b98SHong Zhang 52d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 53d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 54d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 55d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 56d4002b98SHong Zhang 57d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 58d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 59d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 60d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 61d4002b98SHong Zhang 62d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 63d4002b98SHong Zhang entries or columns indices. 64d4002b98SHong Zhang 65d4002b98SHong Zhang The maximum number of nonzeos in any row should be as accuate as possible. 66d4002b98SHong Zhang If it is underesitmated, you will get bad performance due to reallocation 67d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 68d4002b98SHong Zhang 69d4002b98SHong Zhang Level: intermediate 70d4002b98SHong Zhang 71d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 72d4002b98SHong Zhang 73d4002b98SHong Zhang @*/ 74d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 75d4002b98SHong Zhang { 76d4002b98SHong Zhang PetscErrorCode ierr; 77d4002b98SHong Zhang 78d4002b98SHong Zhang PetscFunctionBegin; 79d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 80d4002b98SHong Zhang PetscValidType(B,1); 81d4002b98SHong Zhang ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr); 82d4002b98SHong Zhang PetscFunctionReturn(0); 83d4002b98SHong Zhang } 84d4002b98SHong Zhang 85d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 86d4002b98SHong Zhang { 87d4002b98SHong Zhang Mat_SeqSELL *b; 88d4002b98SHong Zhang PetscInt i,j,totalslices; 89d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 90d4002b98SHong Zhang PetscErrorCode ierr; 91d4002b98SHong Zhang 92d4002b98SHong Zhang PetscFunctionBegin; 93d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 94d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 95d4002b98SHong Zhang skipallocation = PETSC_TRUE; 96d4002b98SHong Zhang maxallocrow = 0; 97d4002b98SHong Zhang } 98d4002b98SHong Zhang 99d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 100d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 101d4002b98SHong Zhang 102d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 103d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 104d4002b98SHong Zhang if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow); 105d4002b98SHong Zhang if (rlen) { 106d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 107d4002b98SHong Zhang if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]); 108d4002b98SHong Zhang if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n); 109d4002b98SHong Zhang } 110d4002b98SHong Zhang } 111d4002b98SHong Zhang 112d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 113d4002b98SHong Zhang 114d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 115d4002b98SHong Zhang 116d4002b98SHong Zhang totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */ 117d4002b98SHong Zhang b->totalslices = totalslices; 118d4002b98SHong Zhang if (!skipallocation) { 119d4002b98SHong Zhang if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n); 120d4002b98SHong Zhang 121d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 122d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr); 123d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 124d4002b98SHong Zhang } 125d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 126d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 127d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 128d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 129d4002b98SHong Zhang } else { 130d4002b98SHong Zhang maxallocrow = 0; 131d4002b98SHong Zhang b->sliidx[0] = 0; 132d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 133d4002b98SHong Zhang b->sliidx[i] = 0; 134d4002b98SHong Zhang for (j=0;j<8;j++) { 135d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 136d4002b98SHong Zhang } 137d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 138d4002b98SHong Zhang b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i]; 139d4002b98SHong Zhang } 140d4002b98SHong Zhang /* last slice */ 141d4002b98SHong Zhang b->sliidx[totalslices] = 0; 142d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 143d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 144d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 145d4002b98SHong Zhang } 146d4002b98SHong Zhang 147d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 148d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 149d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr); 150d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 151d4002b98SHong Zhang ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr); 152d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 153d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 154d4002b98SHong Zhang ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr); 155d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr); 156d4002b98SHong Zhang 157d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 158d4002b98SHong Zhang b->free_val = PETSC_TRUE; 159d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 160d4002b98SHong Zhang } else { 161d4002b98SHong Zhang b->free_val = PETSC_FALSE; 162d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 163d4002b98SHong Zhang } 164d4002b98SHong Zhang 165d4002b98SHong Zhang b->nz = 0; 166d4002b98SHong Zhang b->maxallocrow = maxallocrow; 167d4002b98SHong Zhang b->rlenmax = maxallocrow; 168d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 169d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 170d4002b98SHong Zhang if (realalloc) { 171d4002b98SHong Zhang ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 172d4002b98SHong Zhang } 173d4002b98SHong Zhang PetscFunctionReturn(0); 174d4002b98SHong Zhang } 175d4002b98SHong Zhang 1766108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1776108893eSStefano Zampini { 1786108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL*)A->data; 1796108893eSStefano Zampini PetscInt shift; 1806108893eSStefano Zampini 1816108893eSStefano Zampini PetscFunctionBegin; 1826108893eSStefano Zampini if (row < 0 || row >= A->rmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range",row); 1836108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1846108893eSStefano Zampini shift = a->sliidx[row>>3]+(row&0x07); 1856108893eSStefano Zampini if (!a->getrowcols) { 1866108893eSStefano Zampini PetscErrorCode ierr; 1876108893eSStefano Zampini 1886108893eSStefano Zampini ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr); 1896108893eSStefano Zampini } 1906108893eSStefano Zampini if (idx) { 1916108893eSStefano Zampini PetscInt j; 1926108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j]; 1936108893eSStefano Zampini *idx = a->getrowcols; 1946108893eSStefano Zampini } 1956108893eSStefano Zampini if (v) { 1966108893eSStefano Zampini PetscInt j; 1976108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j]; 1986108893eSStefano Zampini *v = a->getrowvals; 1996108893eSStefano Zampini } 2006108893eSStefano Zampini PetscFunctionReturn(0); 2016108893eSStefano Zampini } 2026108893eSStefano Zampini 2036108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 2046108893eSStefano Zampini { 2056108893eSStefano Zampini PetscFunctionBegin; 2066108893eSStefano Zampini PetscFunctionReturn(0); 2076108893eSStefano Zampini } 2086108893eSStefano Zampini 209d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 210d4002b98SHong Zhang { 211d4002b98SHong Zhang Mat B; 212d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 213e3f1f374SStefano Zampini PetscInt i; 214d4002b98SHong Zhang PetscErrorCode ierr; 215d4002b98SHong Zhang 216d4002b98SHong Zhang PetscFunctionBegin; 217ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 218ad013a7bSRichard Tran Mills B = *newmat; 219e3f1f374SStefano Zampini ierr = MatZeroEntries(B);CHKERRQ(ierr); 220ad013a7bSRichard Tran Mills } else { 221d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 222d4002b98SHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 223d4002b98SHong Zhang ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 224d4002b98SHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr); 225ad013a7bSRichard Tran Mills } 226d4002b98SHong Zhang 227e3f1f374SStefano Zampini for (i=0; i<A->rmap->n; i++) { 228e3f1f374SStefano Zampini PetscInt nz,*cols; 229e3f1f374SStefano Zampini PetscScalar *vals; 230e3f1f374SStefano Zampini 231e3f1f374SStefano Zampini ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 232e3f1f374SStefano Zampini ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 233e3f1f374SStefano Zampini ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 234d4002b98SHong Zhang } 235e3f1f374SStefano Zampini 236d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 237d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 239d4002b98SHong Zhang 240d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 241d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 242d4002b98SHong Zhang } else { 243d4002b98SHong Zhang *newmat = B; 244d4002b98SHong Zhang } 245d4002b98SHong Zhang PetscFunctionReturn(0); 246d4002b98SHong Zhang } 247d4002b98SHong Zhang 248d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 249d4002b98SHong Zhang 250d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 251d4002b98SHong Zhang { 252d4002b98SHong Zhang Mat B; 253d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 254d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 255d4002b98SHong Zhang const PetscInt *cols; 256d4002b98SHong Zhang const PetscScalar *vals; 257d4002b98SHong Zhang PetscErrorCode ierr; 258d4002b98SHong Zhang 259d4002b98SHong Zhang PetscFunctionBegin; 260d4002b98SHong Zhang if (A->rmap->bs > 1) { 261d4002b98SHong Zhang ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr); 262d4002b98SHong Zhang PetscFunctionReturn(0); 263d4002b98SHong Zhang } 264ad013a7bSRichard Tran Mills 265ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 266ad013a7bSRichard Tran Mills B = *newmat; 267ad013a7bSRichard Tran Mills } else { 268d4002b98SHong Zhang /* Can we just use ilen? */ 269d4002b98SHong Zhang ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr); 270d4002b98SHong Zhang for (i=0; i<m; i++) { 271d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 272d4002b98SHong Zhang } 273d4002b98SHong Zhang 274d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 275d4002b98SHong Zhang ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 276d4002b98SHong Zhang ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr); 277d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr); 278d4002b98SHong Zhang ierr = PetscFree(rowlengths);CHKERRQ(ierr); 279ad013a7bSRichard Tran Mills } 280d4002b98SHong Zhang 281d4002b98SHong Zhang for (row=0; row<m; row++) { 282d4002b98SHong Zhang ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 283d4002b98SHong Zhang ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 284d4002b98SHong Zhang ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 285d4002b98SHong Zhang } 286d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 287d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 288d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 289d4002b98SHong Zhang 290d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 291d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 292d4002b98SHong Zhang } else { 293d4002b98SHong Zhang *newmat = B; 294d4002b98SHong Zhang } 295d4002b98SHong Zhang PetscFunctionReturn(0); 296d4002b98SHong Zhang } 297d4002b98SHong Zhang 298d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 299d4002b98SHong Zhang { 300d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 301d4002b98SHong Zhang PetscScalar *y; 302d4002b98SHong Zhang const PetscScalar *x; 303d4002b98SHong Zhang const MatScalar *aval=a->val; 304d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 305d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 3067285fed1SHong Zhang PetscInt i,j; 307d4002b98SHong Zhang PetscErrorCode ierr; 308d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 309d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 310d4002b98SHong Zhang __m256i vec_idx; 311d4002b98SHong Zhang __mmask8 mask; 312d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 313d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 314a48a6482SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 315a48a6482SHong Zhang __m128i vec_idx; 316a48a6482SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 317a48a6482SHong Zhang MatScalar yval; 318a48a6482SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 319d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 320d4002b98SHong Zhang __m128d vec_x_tmp; 321d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 322d4002b98SHong Zhang MatScalar yval; 323d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 324d4002b98SHong Zhang #else 325d4002b98SHong Zhang PetscScalar sum[8]; 326d4002b98SHong Zhang #endif 327d4002b98SHong Zhang 328d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 329d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 330d4002b98SHong Zhang #endif 331d4002b98SHong Zhang 332d4002b98SHong Zhang PetscFunctionBegin; 333d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 334d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 335d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 336d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 337d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 338d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 339d4002b98SHong Zhang 340d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 341d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 342d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 343d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 344d4002b98SHong Zhang 34538efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 346d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 347d4002b98SHong Zhang case 3: 348d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 349d4002b98SHong Zhang acolidx += 8; aval += 8; 350d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 351d4002b98SHong Zhang acolidx += 8; aval += 8; 352d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 353d4002b98SHong Zhang acolidx += 8; aval += 8; 354d4002b98SHong Zhang j += 3; 355d4002b98SHong Zhang break; 356d4002b98SHong Zhang case 2: 357d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 358d4002b98SHong Zhang acolidx += 8; aval += 8; 359d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 360d4002b98SHong Zhang acolidx += 8; aval += 8; 361d4002b98SHong Zhang j += 2; 362d4002b98SHong Zhang break; 363d4002b98SHong Zhang case 1: 364d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 365d4002b98SHong Zhang acolidx += 8; aval += 8; 366d4002b98SHong Zhang j += 1; 367d4002b98SHong Zhang break; 368d4002b98SHong Zhang } 369d4002b98SHong Zhang #pragma novector 370d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 371d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 372d4002b98SHong Zhang acolidx += 8; aval += 8; 373d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 374d4002b98SHong Zhang acolidx += 8; aval += 8; 375d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 376d4002b98SHong Zhang acolidx += 8; aval += 8; 377d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 378d4002b98SHong Zhang acolidx += 8; aval += 8; 379d4002b98SHong Zhang } 380d4002b98SHong Zhang 381d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 382d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 383d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 384d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 385d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 386d4002b98SHong Zhang _mm512_mask_store_pd(&y[8*i],mask,vec_y); 387d4002b98SHong Zhang } else { 388d4002b98SHong Zhang _mm512_store_pd(&y[8*i],vec_y); 389d4002b98SHong Zhang } 390d4002b98SHong Zhang } 391a48a6482SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 392a48a6482SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 393a48a6482SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 394a48a6482SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 395a48a6482SHong Zhang 396a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 397a48a6482SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 398a48a6482SHong Zhang rows_left = A->rmap->n - 8*i; 399a48a6482SHong Zhang for (r=0; r<rows_left; ++r) { 400a48a6482SHong Zhang yval = (MatScalar)0; 401a48a6482SHong Zhang row = 8*i + r; 402a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 403a48a6482SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 404a48a6482SHong Zhang y[row] = yval; 405a48a6482SHong Zhang } 406a48a6482SHong Zhang break; 407a48a6482SHong Zhang } 408a48a6482SHong Zhang 409a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 410a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 411a48a6482SHong Zhang 412a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 413a48a6482SHong Zhang #pragma novector 414a48a6482SHong Zhang #pragma unroll(2) 415a48a6482SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 416a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 417a48a6482SHong Zhang aval += 4; acolidx += 4; 418a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2); 419a48a6482SHong Zhang aval += 4; acolidx += 4; 420a48a6482SHong Zhang } 421a48a6482SHong Zhang 422a48a6482SHong Zhang _mm256_store_pd(y+i*8,vec_y); 423a48a6482SHong Zhang _mm256_store_pd(y+i*8+4,vec_y2); 424a48a6482SHong Zhang } 425d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 426d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 427d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 428d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 429d4002b98SHong Zhang 430d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 431d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 432d4002b98SHong Zhang 433d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 434d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 435d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 436d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 437d4002b98SHong Zhang yval = (MatScalar)0; 438d4002b98SHong Zhang row = 8*i + r; 439d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 440d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 441d4002b98SHong Zhang y[row] = yval; 442d4002b98SHong Zhang } 443d4002b98SHong Zhang break; 444d4002b98SHong Zhang } 445d4002b98SHong Zhang 446d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 447a48a6482SHong Zhang #pragma novector 448a48a6482SHong Zhang #pragma unroll(2) 4497285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 450d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 451d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 452d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 453d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 454d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 455d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 456d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 457d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 458d4002b98SHong Zhang aval += 4; 459d4002b98SHong Zhang 460d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 461d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 462d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 463d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 464d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 465d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 466d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 467d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 468d4002b98SHong Zhang aval += 4; 469d4002b98SHong Zhang } 470d4002b98SHong Zhang 471d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 472d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 473d4002b98SHong Zhang } 474d4002b98SHong Zhang #else 475d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 476d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 477d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 478d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 479d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 480d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 481d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 482d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 483d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 484d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 485d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 486d4002b98SHong Zhang } 487d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 488d4002b98SHong Zhang for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 489d4002b98SHong Zhang } else { 4907285fed1SHong Zhang for(j=0; j<8; j++) y[8*i+j] = sum[j]; 491d4002b98SHong Zhang } 492d4002b98SHong Zhang } 493d4002b98SHong Zhang #endif 494d4002b98SHong Zhang 495d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */ 496d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 497d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 498d4002b98SHong Zhang PetscFunctionReturn(0); 499d4002b98SHong Zhang } 500d4002b98SHong Zhang 501d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 502d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 503d4002b98SHong Zhang { 504d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 505d4002b98SHong Zhang PetscScalar *y,*z; 506d4002b98SHong Zhang const PetscScalar *x; 507d4002b98SHong Zhang const MatScalar *aval=a->val; 508d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 509d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 510d4002b98SHong Zhang PetscInt i,j; 511d4002b98SHong Zhang PetscErrorCode ierr; 512d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5137285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 514d4002b98SHong Zhang __m256i vec_idx; 515d4002b98SHong Zhang __mmask8 mask; 5167285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 5177285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 5187285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 5197285fed1SHong Zhang __m128d vec_x_tmp; 5207285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 5217285fed1SHong Zhang MatScalar yval; 5227285fed1SHong Zhang PetscInt r,row,nnz_in_row; 523d4002b98SHong Zhang #else 524d4002b98SHong Zhang PetscScalar sum[8]; 525d4002b98SHong Zhang #endif 526d4002b98SHong Zhang 527d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 528d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 529d4002b98SHong Zhang #endif 530d4002b98SHong Zhang 531d4002b98SHong Zhang PetscFunctionBegin; 532d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 533d4002b98SHong Zhang ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 534d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5357285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5367285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5377285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5387285fed1SHong Zhang 539d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 540d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 5417285fed1SHong Zhang vec_y = _mm512_mask_load_pd(vec_y,mask,&y[8*i]); 5427285fed1SHong Zhang } else { 5437285fed1SHong Zhang vec_y = _mm512_load_pd(&y[8*i]); 5447285fed1SHong Zhang } 5457285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5467285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5477285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5487285fed1SHong Zhang 5497285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5507285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 5517285fed1SHong Zhang case 3: 5527285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5537285fed1SHong Zhang acolidx += 8; aval += 8; 5547285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5557285fed1SHong Zhang acolidx += 8; aval += 8; 5567285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5577285fed1SHong Zhang acolidx += 8; aval += 8; 5587285fed1SHong Zhang j += 3; 5597285fed1SHong Zhang break; 5607285fed1SHong Zhang case 2: 5617285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5627285fed1SHong Zhang acolidx += 8; aval += 8; 5637285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5647285fed1SHong Zhang acolidx += 8; aval += 8; 5657285fed1SHong Zhang j += 2; 5667285fed1SHong Zhang break; 5677285fed1SHong Zhang case 1: 5687285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5697285fed1SHong Zhang acolidx += 8; aval += 8; 5707285fed1SHong Zhang j += 1; 5717285fed1SHong Zhang break; 5727285fed1SHong Zhang } 5737285fed1SHong Zhang #pragma novector 5747285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 5757285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5767285fed1SHong Zhang acolidx += 8; aval += 8; 5777285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5787285fed1SHong Zhang acolidx += 8; aval += 8; 5797285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5807285fed1SHong Zhang acolidx += 8; aval += 8; 5817285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5827285fed1SHong Zhang acolidx += 8; aval += 8; 5837285fed1SHong Zhang } 5847285fed1SHong Zhang 5857285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 5867285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 5877285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 5887285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 589d4002b98SHong Zhang _mm512_mask_store_pd(&z[8*i],mask,vec_y); 590d4002b98SHong Zhang } else { 591d4002b98SHong Zhang _mm512_store_pd(&z[8*i],vec_y); 592d4002b98SHong Zhang } 5937285fed1SHong Zhang } 5947285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 5957285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 5967285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5977285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5987285fed1SHong Zhang 5997285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6007285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6017285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6027285fed1SHong Zhang row = 8*i + r; 6037285fed1SHong Zhang yval = (MatScalar)0.0; 6047285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6057285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 6067285fed1SHong Zhang z[row] = y[row] + yval; 6077285fed1SHong Zhang } 6087285fed1SHong Zhang break; 6097285fed1SHong Zhang } 6107285fed1SHong Zhang 6117285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 6127285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 6137285fed1SHong Zhang 6147285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6157285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6167285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6177285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6187285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6197285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6207285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6217285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6227285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6237285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 6247285fed1SHong Zhang aval += 4; 6257285fed1SHong Zhang 6267285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6277285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6287285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6297285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6307285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6317285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6327285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6337285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 6347285fed1SHong Zhang aval += 4; 6357285fed1SHong Zhang } 6367285fed1SHong Zhang 6377285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 6387285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 6397285fed1SHong Zhang } 640d4002b98SHong Zhang #else 6417285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 6427285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 643d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 644d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 645d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 646d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 647d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 648d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 649d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 650d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 651d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 652d4002b98SHong Zhang } 6537285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6547285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 655d4002b98SHong Zhang } else { 6567285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 6577285fed1SHong Zhang } 658d4002b98SHong Zhang } 659d4002b98SHong Zhang #endif 660d4002b98SHong Zhang 661d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 662d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 663d4002b98SHong Zhang ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 664d4002b98SHong Zhang PetscFunctionReturn(0); 665d4002b98SHong Zhang } 666d4002b98SHong Zhang 667d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 668d4002b98SHong Zhang { 669d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 670d4002b98SHong Zhang PetscScalar *y; 671d4002b98SHong Zhang const PetscScalar *x; 672d4002b98SHong Zhang const MatScalar *aval=a->val; 673d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 6747285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 675d4002b98SHong Zhang PetscErrorCode ierr; 676d4002b98SHong Zhang 677d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 678d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 679d4002b98SHong Zhang #endif 680d4002b98SHong Zhang 681d4002b98SHong Zhang PetscFunctionBegin; 682d4002b98SHong Zhang if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); } 683d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 684d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 685d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 6867285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6877285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6887285fed1SHong Zhang row = 8*i + r; 6897285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6907285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 6917285fed1SHong Zhang } 6927285fed1SHong Zhang break; 6937285fed1SHong Zhang } 6947285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6957285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 6967285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 6977285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 6987285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 6997285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 7007285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 7017285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 7027285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 703d4002b98SHong Zhang } 704d4002b98SHong Zhang } 705d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr); 706d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 707d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 708d4002b98SHong Zhang PetscFunctionReturn(0); 709d4002b98SHong Zhang } 710d4002b98SHong Zhang 711d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 712d4002b98SHong Zhang { 713d4002b98SHong Zhang PetscErrorCode ierr; 714d4002b98SHong Zhang 715d4002b98SHong Zhang PetscFunctionBegin; 716d4002b98SHong Zhang ierr = VecSet(yy,0.0);CHKERRQ(ierr); 717d4002b98SHong Zhang ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr); 718d4002b98SHong Zhang PetscFunctionReturn(0); 719d4002b98SHong Zhang } 720d4002b98SHong Zhang 721d4002b98SHong Zhang /* 722d4002b98SHong Zhang Checks for missing diagonals 723d4002b98SHong Zhang */ 724d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 725d4002b98SHong Zhang { 726d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 727d4002b98SHong Zhang PetscInt *diag,i; 728d4002b98SHong Zhang 729d4002b98SHong Zhang PetscFunctionBegin; 730d4002b98SHong Zhang *missing = PETSC_FALSE; 731d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 732d4002b98SHong Zhang *missing = PETSC_TRUE; 733d4002b98SHong Zhang if (d) *d = 0; 734d4002b98SHong Zhang PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n"); 735d4002b98SHong Zhang } else { 736d4002b98SHong Zhang diag = a->diag; 737d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 738d4002b98SHong Zhang if (diag[i] == -1) { 739d4002b98SHong Zhang *missing = PETSC_TRUE; 740d4002b98SHong Zhang if (d) *d = i; 741d4002b98SHong Zhang PetscInfo1(A,"Matrix is missing diagonal number %D\n",i); 742d4002b98SHong Zhang break; 743d4002b98SHong Zhang } 744d4002b98SHong Zhang } 745d4002b98SHong Zhang } 746d4002b98SHong Zhang PetscFunctionReturn(0); 747d4002b98SHong Zhang } 748d4002b98SHong Zhang 749d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 750d4002b98SHong Zhang { 751d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 752d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 753d4002b98SHong Zhang PetscErrorCode ierr; 754d4002b98SHong Zhang 755d4002b98SHong Zhang PetscFunctionBegin; 756d4002b98SHong Zhang if (!a->diag) { 757d4002b98SHong Zhang ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 758d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 759d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 760d4002b98SHong Zhang } 761d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 762d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 763d4002b98SHong Zhang a->diag[i] = -1; 764d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 765d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 766d4002b98SHong Zhang a->diag[i] = shift+j*8; 767d4002b98SHong Zhang break; 768d4002b98SHong Zhang } 769d4002b98SHong Zhang } 770d4002b98SHong Zhang } 771d4002b98SHong Zhang PetscFunctionReturn(0); 772d4002b98SHong Zhang } 773d4002b98SHong Zhang 774d4002b98SHong Zhang /* 775d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 776d4002b98SHong Zhang */ 777d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 778d4002b98SHong Zhang { 779d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 780d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 781d4002b98SHong Zhang MatScalar *val = a->val; 782d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 783d4002b98SHong Zhang PetscErrorCode ierr; 784d4002b98SHong Zhang 785d4002b98SHong Zhang PetscFunctionBegin; 786d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 787d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 788d4002b98SHong Zhang diag = a->diag; 789d4002b98SHong Zhang if (!a->idiag) { 790d4002b98SHong Zhang ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr); 791d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr); 792d4002b98SHong Zhang val = a->val; 793d4002b98SHong Zhang } 794d4002b98SHong Zhang mdiag = a->mdiag; 795d4002b98SHong Zhang idiag = a->idiag; 796d4002b98SHong Zhang 797d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 798d4002b98SHong Zhang for (i=0; i<m; i++) { 799d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 800d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 801d4002b98SHong Zhang if (PetscRealPart(fshift)) { 802d4002b98SHong Zhang ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr); 803d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 804d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 805d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 806d4002b98SHong Zhang } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i); 807d4002b98SHong Zhang } 808d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 809d4002b98SHong Zhang } 810d4002b98SHong Zhang ierr = PetscLogFlops(m);CHKERRQ(ierr); 811d4002b98SHong Zhang } else { 812d4002b98SHong Zhang for (i=0; i<m; i++) { 813d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 814d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 815d4002b98SHong Zhang } 816d4002b98SHong Zhang ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr); 817d4002b98SHong Zhang } 818d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 819d4002b98SHong Zhang PetscFunctionReturn(0); 820d4002b98SHong Zhang } 821d4002b98SHong Zhang 822d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 823d4002b98SHong Zhang { 824d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 825d4002b98SHong Zhang PetscErrorCode ierr; 826d4002b98SHong Zhang 827d4002b98SHong Zhang PetscFunctionBegin; 828d4002b98SHong Zhang ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr); 829d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 830d4002b98SHong Zhang PetscFunctionReturn(0); 831d4002b98SHong Zhang } 832d4002b98SHong Zhang 833d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 834d4002b98SHong Zhang { 835d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 836d4002b98SHong Zhang PetscErrorCode ierr; 837d4002b98SHong Zhang 838d4002b98SHong Zhang PetscFunctionBegin; 839d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 840d4002b98SHong Zhang PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz); 841d4002b98SHong Zhang #endif 842d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr); 843d4002b98SHong Zhang ierr = ISDestroy(&a->row);CHKERRQ(ierr); 844d4002b98SHong Zhang ierr = ISDestroy(&a->col);CHKERRQ(ierr); 845d4002b98SHong Zhang ierr = PetscFree(a->diag);CHKERRQ(ierr); 846d4002b98SHong Zhang ierr = PetscFree(a->ibdiag);CHKERRQ(ierr); 847d4002b98SHong Zhang ierr = PetscFree(a->rlen);CHKERRQ(ierr); 848d4002b98SHong Zhang ierr = PetscFree(a->sliidx);CHKERRQ(ierr); 849d4002b98SHong Zhang ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr); 850d4002b98SHong Zhang ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 851d4002b98SHong Zhang ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 852d4002b98SHong Zhang ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 8536108893eSStefano Zampini ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr); 854d4002b98SHong Zhang 855d4002b98SHong Zhang ierr = PetscFree(A->data);CHKERRQ(ierr); 856d4002b98SHong Zhang 857d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 858d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 859d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 860d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 861d4002b98SHong Zhang #endif 862d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr); 863d4002b98SHong Zhang PetscFunctionReturn(0); 864d4002b98SHong Zhang } 865d4002b98SHong Zhang 866d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 867d4002b98SHong Zhang { 868d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 869d4002b98SHong Zhang PetscErrorCode ierr; 870d4002b98SHong Zhang 871d4002b98SHong Zhang PetscFunctionBegin; 872d4002b98SHong Zhang switch (op) { 873d4002b98SHong Zhang case MAT_ROW_ORIENTED: 874d4002b98SHong Zhang a->roworiented = flg; 875d4002b98SHong Zhang break; 876d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 877d4002b98SHong Zhang a->keepnonzeropattern = flg; 878d4002b98SHong Zhang break; 879d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 880d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 881d4002b98SHong Zhang break; 882d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 883d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 884d4002b98SHong Zhang break; 885d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 886d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 887d4002b98SHong Zhang break; 888d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 889d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 890d4002b98SHong Zhang break; 891d4002b98SHong Zhang case MAT_NEW_DIAGONALS: 892d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 893d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 894d4002b98SHong Zhang ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 895d4002b98SHong Zhang break; 896d4002b98SHong Zhang case MAT_SPD: 897d4002b98SHong Zhang case MAT_SYMMETRIC: 898d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 899d4002b98SHong Zhang case MAT_HERMITIAN: 900d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 901d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 902d4002b98SHong Zhang break; 903d4002b98SHong Zhang default: 904d4002b98SHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 905d4002b98SHong Zhang } 906d4002b98SHong Zhang PetscFunctionReturn(0); 907d4002b98SHong Zhang } 908d4002b98SHong Zhang 909d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 910d4002b98SHong Zhang { 911d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 912d4002b98SHong Zhang PetscInt i,j,n,shift; 913d4002b98SHong Zhang PetscScalar *x,zero=0.0; 914d4002b98SHong Zhang PetscErrorCode ierr; 915d4002b98SHong Zhang 916d4002b98SHong Zhang PetscFunctionBegin; 917d4002b98SHong Zhang ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 918d4002b98SHong Zhang if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 919d4002b98SHong Zhang 920d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 921d4002b98SHong Zhang PetscInt *diag=a->diag; 922d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 923d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 924d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 925d4002b98SHong Zhang PetscFunctionReturn(0); 926d4002b98SHong Zhang } 927d4002b98SHong Zhang 928d4002b98SHong Zhang ierr = VecSet(v,zero);CHKERRQ(ierr); 929d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 930d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 931d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 932d4002b98SHong Zhang x[i] = 0; 933d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 934d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 935d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 936d4002b98SHong Zhang break; 937d4002b98SHong Zhang } 938d4002b98SHong Zhang } 939d4002b98SHong Zhang } 940d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 941d4002b98SHong Zhang PetscFunctionReturn(0); 942d4002b98SHong Zhang } 943d4002b98SHong Zhang 944d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 945d4002b98SHong Zhang { 946d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 947d4002b98SHong Zhang const PetscScalar *l,*r; 948d4002b98SHong Zhang PetscInt i,j,m,n,row; 949d4002b98SHong Zhang PetscErrorCode ierr; 950d4002b98SHong Zhang 951d4002b98SHong Zhang PetscFunctionBegin; 952d4002b98SHong Zhang if (ll) { 953d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 954d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 955d4002b98SHong Zhang ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr); 956d4002b98SHong Zhang if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 957d4002b98SHong Zhang ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 958d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 959d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 960d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 961d4002b98SHong Zhang } 962d4002b98SHong Zhang } 963d4002b98SHong Zhang ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 964d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 965d4002b98SHong Zhang } 966d4002b98SHong Zhang if (rr) { 967d4002b98SHong Zhang ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr); 968d4002b98SHong Zhang if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 969d4002b98SHong Zhang ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 970d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 971d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 972d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 973d4002b98SHong Zhang } 974d4002b98SHong Zhang } 975d4002b98SHong Zhang ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 976d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 977d4002b98SHong Zhang } 978d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 979d4002b98SHong Zhang PetscFunctionReturn(0); 980d4002b98SHong Zhang } 981d4002b98SHong Zhang 982d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 983d4002b98SHong Zhang 984d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 985d4002b98SHong Zhang { 986d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 987d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 988d4002b98SHong Zhang PetscInt shift; 989d4002b98SHong Zhang MatScalar *vp; 990d4002b98SHong Zhang 991d4002b98SHong Zhang PetscFunctionBegin; 992*68aafef3SStefano Zampini for (k=0; k<m; k++) { /* loop over requested rows */ 993d4002b98SHong Zhang row = im[k]; 994d4002b98SHong Zhang if (row<0) continue; 995d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 996d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 997d4002b98SHong Zhang #endif 998d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 999d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1000d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1001*68aafef3SStefano Zampini for (l=0; l<n; l++) { /* loop over requested columns */ 1002d4002b98SHong Zhang col = in[l]; 1003d4002b98SHong Zhang if (col<0) continue; 1004d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1005d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1); 1006d4002b98SHong Zhang #endif 1007d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 1008d4002b98SHong Zhang while (high-low > 5) { 1009d4002b98SHong Zhang t = (low+high)/2; 1010d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1011d4002b98SHong Zhang else low = t; 1012d4002b98SHong Zhang } 1013d4002b98SHong Zhang for (i=low; i<high; i++) { 1014d4002b98SHong Zhang if (*(cp+8*i) > col) break; 1015d4002b98SHong Zhang if (*(cp+8*i) == col) { 1016d4002b98SHong Zhang *v++ = *(vp+8*i); 1017d4002b98SHong Zhang goto finished; 1018d4002b98SHong Zhang } 1019d4002b98SHong Zhang } 1020d4002b98SHong Zhang *v++ = 0.0; 1021d4002b98SHong Zhang finished:; 1022d4002b98SHong Zhang } 1023d4002b98SHong Zhang } 1024d4002b98SHong Zhang PetscFunctionReturn(0); 1025d4002b98SHong Zhang } 1026d4002b98SHong Zhang 1027d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 1028d4002b98SHong Zhang { 1029d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1030d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1031d4002b98SHong Zhang const char *name; 1032d4002b98SHong Zhang PetscViewerFormat format; 1033d4002b98SHong Zhang PetscErrorCode ierr; 1034d4002b98SHong Zhang 1035d4002b98SHong Zhang PetscFunctionBegin; 1036d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1037d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1038d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1039d4002b98SHong Zhang /* 1040d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1041d4002b98SHong Zhang nofinalvalue = 1; 1042d4002b98SHong Zhang } 1043d4002b98SHong Zhang */ 1044d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1045d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr); 1046d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr); 1047d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1048d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1049d4002b98SHong Zhang #else 1050d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1051d4002b98SHong Zhang #endif 1052d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr); 1053d4002b98SHong Zhang 1054d4002b98SHong Zhang for (i=0; i<m; i++) { 1055d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1056d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1057d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1058d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1059d4002b98SHong Zhang #else 1060d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1061d4002b98SHong Zhang #endif 1062d4002b98SHong Zhang } 1063d4002b98SHong Zhang } 1064d4002b98SHong Zhang /* 1065d4002b98SHong Zhang if (nofinalvalue) { 1066d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1067d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr); 1068d4002b98SHong Zhang #else 1069d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr); 1070d4002b98SHong Zhang #endif 1071d4002b98SHong Zhang } 1072d4002b98SHong Zhang */ 1073d4002b98SHong Zhang ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 1074d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr); 1075d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1076d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1077d4002b98SHong Zhang PetscFunctionReturn(0); 1078d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1079d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1080d4002b98SHong Zhang for (i=0; i<m; i++) { 1081d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1082d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1083d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1084d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1085d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1086d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1087d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1088d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1089d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1090d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1091d4002b98SHong Zhang } 1092d4002b98SHong Zhang #else 1093d4002b98SHong Zhang if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);} 1094d4002b98SHong Zhang #endif 1095d4002b98SHong Zhang } 1096d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1097d4002b98SHong Zhang } 1098d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1099d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1100d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1101d4002b98SHong Zhang PetscScalar value; 1102d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1103d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1104d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1105d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1106d4002b98SHong Zhang realonly = PETSC_FALSE; 1107d4002b98SHong Zhang break; 1108d4002b98SHong Zhang } 1109d4002b98SHong Zhang } 1110d4002b98SHong Zhang #endif 1111d4002b98SHong Zhang 1112d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1113d4002b98SHong Zhang for (i=0; i<m; i++) { 1114d4002b98SHong Zhang jcnt = 0; 1115d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1116d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1117d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1118d4002b98SHong Zhang value = a->val[cnt++]; 1119d4002b98SHong Zhang jcnt++; 1120d4002b98SHong Zhang } else { 1121d4002b98SHong Zhang value = 0.0; 1122d4002b98SHong Zhang } 1123d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1124d4002b98SHong Zhang if (realonly) { 1125d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr); 1126d4002b98SHong Zhang } else { 1127d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr); 1128d4002b98SHong Zhang } 1129d4002b98SHong Zhang #else 1130d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr); 1131d4002b98SHong Zhang #endif 1132d4002b98SHong Zhang } 1133d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1134d4002b98SHong Zhang } 1135d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1136d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1137d4002b98SHong Zhang PetscInt fshift=1; 1138d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1139d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1140d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr); 1141d4002b98SHong Zhang #else 1142d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr); 1143d4002b98SHong Zhang #endif 1144d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr); 1145d4002b98SHong Zhang for (i=0; i<m; i++) { 1146d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1147d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1148d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1149d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1150d4002b98SHong Zhang #else 1151d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1152d4002b98SHong Zhang #endif 1153d4002b98SHong Zhang } 1154d4002b98SHong Zhang } 1155d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1156*68aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 1157*68aafef3SStefano Zampini for (i=0; i<a->totalslices; i++) { /* loop over slices */ 1158*68aafef3SStefano Zampini PetscInt row; 1159*68aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"slice %D: %D %D\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr); 1160*68aafef3SStefano Zampini for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 1161*68aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1162*68aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 1163*68aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1164*68aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1165*68aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1166*68aafef3SStefano Zampini } else { 1167*68aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1168*68aafef3SStefano Zampini } 1169*68aafef3SStefano Zampini #else 1170*68aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1171*68aafef3SStefano Zampini #endif 1172*68aafef3SStefano Zampini } 1173*68aafef3SStefano Zampini } 1174d4002b98SHong Zhang } else { 1175d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1176d4002b98SHong Zhang if (A->factortype) { 1177d4002b98SHong Zhang for (i=0; i<m; i++) { 1178d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1179d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1180d4002b98SHong Zhang /* L part */ 1181d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1182d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1183d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1184d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1185d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1186d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1187d4002b98SHong Zhang } else { 1188d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1189d4002b98SHong Zhang } 1190d4002b98SHong Zhang #else 1191d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1192d4002b98SHong Zhang #endif 1193d4002b98SHong Zhang } 1194d4002b98SHong Zhang /* diagonal */ 1195d4002b98SHong Zhang j = a->diag[i]; 1196d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1197d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1198d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr); 1199d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1200d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr); 1201d4002b98SHong Zhang } else { 1202d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr); 1203d4002b98SHong Zhang } 1204d4002b98SHong Zhang #else 1205d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr); 1206d4002b98SHong Zhang #endif 1207d4002b98SHong Zhang 1208d4002b98SHong Zhang /* U part */ 1209d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1210d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1211d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1212d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1213d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1214d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1215d4002b98SHong Zhang } else { 1216d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1217d4002b98SHong Zhang } 1218d4002b98SHong Zhang #else 1219d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1220d4002b98SHong Zhang #endif 1221d4002b98SHong Zhang } 1222d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1223d4002b98SHong Zhang } 1224d4002b98SHong Zhang } else { 1225d4002b98SHong Zhang for (i=0; i<m; i++) { 1226d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1227d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1228d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1229d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1230d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1231d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1232d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1233d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1234d4002b98SHong Zhang } else { 1235d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1236d4002b98SHong Zhang } 1237d4002b98SHong Zhang #else 1238d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr); 1239d4002b98SHong Zhang #endif 1240d4002b98SHong Zhang } 1241d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1242d4002b98SHong Zhang } 1243d4002b98SHong Zhang } 1244d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1245d4002b98SHong Zhang } 1246d4002b98SHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1247d4002b98SHong Zhang PetscFunctionReturn(0); 1248d4002b98SHong Zhang } 1249d4002b98SHong Zhang 1250d4002b98SHong Zhang #include <petscdraw.h> 1251d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1252d4002b98SHong Zhang { 1253d4002b98SHong Zhang Mat A=(Mat)Aa; 1254d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1255d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1256d4002b98SHong Zhang int color; 1257d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1258d4002b98SHong Zhang PetscViewer viewer; 1259d4002b98SHong Zhang PetscViewerFormat format; 1260d4002b98SHong Zhang PetscErrorCode ierr; 1261d4002b98SHong Zhang 1262d4002b98SHong Zhang PetscFunctionBegin; 1263d4002b98SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1264d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1265d4002b98SHong Zhang ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1266d4002b98SHong Zhang 1267d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1268d4002b98SHong Zhang 1269d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1270d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1271d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1272d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1273d4002b98SHong Zhang for (i=0; i<m; i++) { 1274d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1275d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1276d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1277d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1278d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1279d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1280d4002b98SHong Zhang } 1281d4002b98SHong Zhang } 1282d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1283d4002b98SHong Zhang for (i=0; i<m; i++) { 1284d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1285d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1286d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1287d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1288d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1289d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1290d4002b98SHong Zhang } 1291d4002b98SHong Zhang } 1292d4002b98SHong Zhang color = PETSC_DRAW_RED; 1293d4002b98SHong Zhang for (i=0; i<m; i++) { 1294d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1295d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1296d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1297d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1298d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1299d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1300d4002b98SHong Zhang } 1301d4002b98SHong Zhang } 1302d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1303d4002b98SHong Zhang } else { 1304d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1305d4002b98SHong Zhang /* first determine max of all nonzero values */ 1306d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1307d4002b98SHong Zhang PetscInt count=0; 1308d4002b98SHong Zhang PetscDraw popup; 1309d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1310d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1311d4002b98SHong Zhang } 1312d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1313d4002b98SHong Zhang ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1314d4002b98SHong Zhang ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1315d4002b98SHong Zhang 1316d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1317d4002b98SHong Zhang for (i=0; i<m; i++) { 1318d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1319d4002b98SHong Zhang y_l = m - i - 1.0; 1320d4002b98SHong Zhang y_r = y_l + 1.0; 1321d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1322d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1323d4002b98SHong Zhang x_r = x_l + 1.0; 1324d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1325d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1326d4002b98SHong Zhang count++; 1327d4002b98SHong Zhang } 1328d4002b98SHong Zhang } 1329d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1330d4002b98SHong Zhang } 1331d4002b98SHong Zhang PetscFunctionReturn(0); 1332d4002b98SHong Zhang } 1333d4002b98SHong Zhang 1334d4002b98SHong Zhang #include <petscdraw.h> 1335d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1336d4002b98SHong Zhang { 1337d4002b98SHong Zhang PetscDraw draw; 1338d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1339d4002b98SHong Zhang PetscBool isnull; 1340d4002b98SHong Zhang PetscErrorCode ierr; 1341d4002b98SHong Zhang 1342d4002b98SHong Zhang PetscFunctionBegin; 1343d4002b98SHong Zhang ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1344d4002b98SHong Zhang ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1345d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1346d4002b98SHong Zhang 1347d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1348d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1349d4002b98SHong Zhang ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1350d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1351d4002b98SHong Zhang ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr); 1352d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1353d4002b98SHong Zhang ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1354d4002b98SHong Zhang PetscFunctionReturn(0); 1355d4002b98SHong Zhang } 1356d4002b98SHong Zhang 1357d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1358d4002b98SHong Zhang { 1359d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1360d4002b98SHong Zhang PetscErrorCode ierr; 1361d4002b98SHong Zhang 1362d4002b98SHong Zhang PetscFunctionBegin; 1363d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1364d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1365d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1366d4002b98SHong Zhang if (iascii) { 1367d4002b98SHong Zhang ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr); 1368d4002b98SHong Zhang } else if (isbinary) { 1369d4002b98SHong Zhang /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */ 1370d4002b98SHong Zhang } else if (isdraw) { 1371d4002b98SHong Zhang ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr); 1372d4002b98SHong Zhang } 1373d4002b98SHong Zhang PetscFunctionReturn(0); 1374d4002b98SHong Zhang } 1375d4002b98SHong Zhang 1376d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1377d4002b98SHong Zhang { 1378d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1379d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1380d4002b98SHong Zhang MatScalar *vp; 1381d4002b98SHong Zhang PetscErrorCode ierr; 1382d4002b98SHong Zhang 1383d4002b98SHong Zhang PetscFunctionBegin; 1384d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1385d4002b98SHong Zhang /* To do: compress out the unused elements */ 1386d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 1387d4002b98SHong Zhang ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr); 1388d4002b98SHong Zhang ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr); 1389d4002b98SHong Zhang ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr); 1390d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1391d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1392d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1393d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1394d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1395d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1396d4002b98SHong Zhang row = 8*i + row_in_slice; 1397d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1398d4002b98SHong Zhang /* 1399d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1400d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1401d4002b98SHong Zhang */ 1402d4002b98SHong Zhang lastcol = 0; 1403d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1404d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1405d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1406d4002b98SHong Zhang for (j=1;j<8;j++) { 1407d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1408d4002b98SHong Zhang lastcol = cp[j]; 1409d4002b98SHong Zhang break; 1410d4002b98SHong Zhang } 1411d4002b98SHong Zhang } 1412d4002b98SHong Zhang } else { 1413d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1414d4002b98SHong Zhang } 1415d4002b98SHong Zhang 1416d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1417d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1418d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1419d4002b98SHong Zhang } 1420d4002b98SHong Zhang } 1421d4002b98SHong Zhang } 1422d4002b98SHong Zhang 1423d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1424d4002b98SHong Zhang a->reallocs = 0; 1425d4002b98SHong Zhang 1426d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1427d4002b98SHong Zhang PetscFunctionReturn(0); 1428d4002b98SHong Zhang } 1429d4002b98SHong Zhang 1430d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1431d4002b98SHong Zhang { 1432d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1433d4002b98SHong Zhang 1434d4002b98SHong Zhang PetscFunctionBegin; 1435d4002b98SHong Zhang info->block_size = 1.0; 1436d4002b98SHong Zhang info->nz_allocated = (double)a->maxallocmat; 1437d4002b98SHong Zhang info->nz_used = (double)a->sliidx[a->totalslices]; /* include padding zeros */ 1438d4002b98SHong Zhang info->nz_unneeded = (double)(a->maxallocmat-a->sliidx[a->totalslices]); 1439d4002b98SHong Zhang info->assemblies = (double)A->num_ass; 1440d4002b98SHong Zhang info->mallocs = (double)A->info.mallocs; 1441d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1442d4002b98SHong Zhang if (A->factortype) { 1443d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1444d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1445d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1446d4002b98SHong Zhang } else { 1447d4002b98SHong Zhang info->fill_ratio_given = 0; 1448d4002b98SHong Zhang info->fill_ratio_needed = 0; 1449d4002b98SHong Zhang info->factor_mallocs = 0; 1450d4002b98SHong Zhang } 1451d4002b98SHong Zhang PetscFunctionReturn(0); 1452d4002b98SHong Zhang } 1453d4002b98SHong Zhang 1454d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1455d4002b98SHong Zhang { 1456d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1457d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1458d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1459d4002b98SHong Zhang MatScalar *vp,value; 1460d4002b98SHong Zhang PetscErrorCode ierr; 1461d4002b98SHong Zhang 1462d4002b98SHong Zhang PetscFunctionBegin; 1463d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1464d4002b98SHong Zhang row = im[k]; 1465d4002b98SHong Zhang if (row < 0) continue; 1466d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1467d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 1468d4002b98SHong Zhang #endif 1469d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1470d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1471d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1472d4002b98SHong Zhang nrow = a->rlen[row]; 1473d4002b98SHong Zhang low = 0; 1474d4002b98SHong Zhang high = nrow; 1475d4002b98SHong Zhang 1476d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1477d4002b98SHong Zhang col = in[l]; 1478d4002b98SHong Zhang if (col<0) continue; 1479d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1480d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1); 1481d4002b98SHong Zhang #endif 1482d4002b98SHong Zhang if (a->roworiented) { 1483d4002b98SHong Zhang value = v[l+k*n]; 1484d4002b98SHong Zhang } else { 1485d4002b98SHong Zhang value = v[k+l*m]; 1486d4002b98SHong Zhang } 1487d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1488d4002b98SHong Zhang 1489d4002b98SHong Zhang /* search in this row for the specified colmun, i indicates the column to be set */ 1490d4002b98SHong Zhang if (col <= lastcol) low = 0; 1491d4002b98SHong Zhang else high = nrow; 1492d4002b98SHong Zhang lastcol = col; 1493d4002b98SHong Zhang while (high-low > 5) { 1494d4002b98SHong Zhang t = (low+high)/2; 1495d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1496d4002b98SHong Zhang else low = t; 1497d4002b98SHong Zhang } 1498d4002b98SHong Zhang for (i=low; i<high; i++) { 1499d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1500d4002b98SHong Zhang if (*(cp+i*8) == col) { 1501d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1502d4002b98SHong Zhang else *(vp+i*8) = value; 1503d4002b98SHong Zhang low = i + 1; 1504d4002b98SHong Zhang goto noinsert; 1505d4002b98SHong Zhang } 1506d4002b98SHong Zhang } 1507d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1508d4002b98SHong Zhang if (nonew == 1) goto noinsert; 1509d4002b98SHong Zhang if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1510d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1511d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1512d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1513d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1514d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1515d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1516d4002b98SHong Zhang } 1517d4002b98SHong Zhang a->rlen[row]++; 1518d4002b98SHong Zhang *(cp+i*8) = col; 1519d4002b98SHong Zhang *(vp+i*8) = value; 1520d4002b98SHong Zhang a->nz++; 1521d4002b98SHong Zhang A->nonzerostate++; 1522d4002b98SHong Zhang low = i+1; high++; nrow++; 1523d4002b98SHong Zhang noinsert:; 1524d4002b98SHong Zhang } 1525d4002b98SHong Zhang a->rlen[row] = nrow; 1526d4002b98SHong Zhang } 1527d4002b98SHong Zhang PetscFunctionReturn(0); 1528d4002b98SHong Zhang } 1529d4002b98SHong Zhang 1530d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1531d4002b98SHong Zhang { 1532d4002b98SHong Zhang PetscErrorCode ierr; 1533d4002b98SHong Zhang 1534d4002b98SHong Zhang PetscFunctionBegin; 1535d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1536d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1537d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1538d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1539d4002b98SHong Zhang 1540d4002b98SHong Zhang if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1541d4002b98SHong Zhang ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1542d4002b98SHong Zhang } else { 1543d4002b98SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1544d4002b98SHong Zhang } 1545d4002b98SHong Zhang PetscFunctionReturn(0); 1546d4002b98SHong Zhang } 1547d4002b98SHong Zhang 1548d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1549d4002b98SHong Zhang { 1550d4002b98SHong Zhang PetscErrorCode ierr; 1551d4002b98SHong Zhang 1552d4002b98SHong Zhang PetscFunctionBegin; 1553d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr); 1554d4002b98SHong Zhang PetscFunctionReturn(0); 1555d4002b98SHong Zhang } 1556d4002b98SHong Zhang 1557d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1558d4002b98SHong Zhang { 1559d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1560d4002b98SHong Zhang 1561d4002b98SHong Zhang PetscFunctionBegin; 1562d4002b98SHong Zhang *array = a->val; 1563d4002b98SHong Zhang PetscFunctionReturn(0); 1564d4002b98SHong Zhang } 1565d4002b98SHong Zhang 1566d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1567d4002b98SHong Zhang { 1568d4002b98SHong Zhang PetscFunctionBegin; 1569d4002b98SHong Zhang PetscFunctionReturn(0); 1570d4002b98SHong Zhang } 1571d4002b98SHong Zhang 1572d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1573d4002b98SHong Zhang { 1574d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1575d4002b98SHong Zhang PetscInt i; 1576d4002b98SHong Zhang MatScalar *aval=a->val; 1577d4002b98SHong Zhang 1578d4002b98SHong Zhang PetscFunctionBegin; 1579d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1580d4002b98SHong Zhang PetscFunctionReturn(0); 1581d4002b98SHong Zhang } 1582d4002b98SHong Zhang 1583d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1584d4002b98SHong Zhang { 1585d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1586d4002b98SHong Zhang PetscInt i; 1587d4002b98SHong Zhang MatScalar *aval=a->val; 1588d4002b98SHong Zhang PetscErrorCode ierr; 1589d4002b98SHong Zhang 1590d4002b98SHong Zhang PetscFunctionBegin; 1591d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1592d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1593d4002b98SHong Zhang PetscFunctionReturn(0); 1594d4002b98SHong Zhang } 1595d4002b98SHong Zhang 1596d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1597d4002b98SHong Zhang { 1598d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1599d4002b98SHong Zhang MatScalar *aval=a->val; 1600d4002b98SHong Zhang PetscScalar oalpha=alpha; 1601d4002b98SHong Zhang PetscBLASInt one=1,size; 1602d4002b98SHong Zhang PetscErrorCode ierr; 1603d4002b98SHong Zhang 1604d4002b98SHong Zhang PetscFunctionBegin; 1605d4002b98SHong Zhang ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr); 1606d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1607d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1608d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr); 1609d4002b98SHong Zhang PetscFunctionReturn(0); 1610d4002b98SHong Zhang } 1611d4002b98SHong Zhang 1612d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1613d4002b98SHong Zhang { 1614d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1615d4002b98SHong Zhang PetscErrorCode ierr; 1616d4002b98SHong Zhang 1617d4002b98SHong Zhang PetscFunctionBegin; 1618d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1619d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr); 1620d4002b98SHong Zhang } 1621d4002b98SHong Zhang ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1622d4002b98SHong Zhang PetscFunctionReturn(0); 1623d4002b98SHong Zhang } 1624d4002b98SHong Zhang 1625d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1626d4002b98SHong Zhang { 1627d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1628d4002b98SHong Zhang PetscScalar *x,sum,*t; 1629d4002b98SHong Zhang const MatScalar *idiag=0,*mdiag; 1630d4002b98SHong Zhang const PetscScalar *b,*xb; 1631d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1632d4002b98SHong Zhang const PetscInt *diag; 1633d4002b98SHong Zhang PetscErrorCode ierr; 1634d4002b98SHong Zhang 1635d4002b98SHong Zhang PetscFunctionBegin; 1636d4002b98SHong Zhang its = its*lits; 1637d4002b98SHong Zhang 1638d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1639d4002b98SHong Zhang if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);} 1640d4002b98SHong Zhang a->fshift = fshift; 1641d4002b98SHong Zhang a->omega = omega; 1642d4002b98SHong Zhang 1643d4002b98SHong Zhang diag = a->diag; 1644d4002b98SHong Zhang t = a->ssor_work; 1645d4002b98SHong Zhang idiag = a->idiag; 1646d4002b98SHong Zhang mdiag = a->mdiag; 1647d4002b98SHong Zhang 1648d4002b98SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1649d4002b98SHong Zhang ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1650d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 1651d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 1652d4002b98SHong Zhang if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1653d4002b98SHong Zhang if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1654d4002b98SHong Zhang 1655d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1656d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1657d4002b98SHong Zhang for (i=0; i<m; i++) { 1658d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1659d4002b98SHong Zhang sum = b[i]; 1660d4002b98SHong Zhang n = (diag[i]-shift)/8; 1661d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1662d4002b98SHong Zhang t[i] = sum; 1663d4002b98SHong Zhang x[i] = sum*idiag[i]; 1664d4002b98SHong Zhang } 1665d4002b98SHong Zhang xb = t; 1666d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1667d4002b98SHong Zhang } else xb = b; 1668d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1669d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1670d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1671d4002b98SHong Zhang sum = xb[i]; 1672d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1673d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1674d4002b98SHong Zhang if (xb == b) { 1675d4002b98SHong Zhang x[i] = sum*idiag[i]; 1676d4002b98SHong Zhang } else { 1677d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1678d4002b98SHong Zhang } 1679d4002b98SHong Zhang } 1680d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1681d4002b98SHong Zhang } 1682d4002b98SHong Zhang its--; 1683d4002b98SHong Zhang } 1684d4002b98SHong Zhang while (its--) { 1685d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1686d4002b98SHong Zhang for (i=0; i<m; i++) { 1687d4002b98SHong Zhang /* lower */ 1688d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1689d4002b98SHong Zhang sum = b[i]; 1690d4002b98SHong Zhang n = (diag[i]-shift)/8; 1691d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1692d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1693d4002b98SHong Zhang /* upper */ 1694d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1695d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1696d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1697d4002b98SHong Zhang } 1698d4002b98SHong Zhang xb = t; 1699d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1700d4002b98SHong Zhang } else xb = b; 1701d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1702d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1703d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1704d4002b98SHong Zhang sum = xb[i]; 1705d4002b98SHong Zhang if (xb == b) { 1706d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1707d4002b98SHong Zhang n = a->rlen[i]; 1708d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1709d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1710d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1711d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1712d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1713d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1714d4002b98SHong Zhang } 1715d4002b98SHong Zhang } 1716d4002b98SHong Zhang if (xb == b) { 1717d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1718d4002b98SHong Zhang } else { 1719d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1720d4002b98SHong Zhang } 1721d4002b98SHong Zhang } 1722d4002b98SHong Zhang } 1723d4002b98SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1724d4002b98SHong Zhang ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 1725d4002b98SHong Zhang PetscFunctionReturn(0); 1726d4002b98SHong Zhang } 1727d4002b98SHong Zhang 1728d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1729d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17306108893eSStefano Zampini MatGetRow_SeqSELL, 17316108893eSStefano Zampini MatRestoreRow_SeqSELL, 1732d4002b98SHong Zhang MatMult_SeqSELL, 1733d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1734d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1735d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1736d4002b98SHong Zhang 0, 1737d4002b98SHong Zhang 0, 1738d4002b98SHong Zhang 0, 1739d4002b98SHong Zhang /* 10*/ 0, 1740d4002b98SHong Zhang 0, 1741d4002b98SHong Zhang 0, 1742d4002b98SHong Zhang MatSOR_SeqSELL, 1743d4002b98SHong Zhang 0, 1744d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1745d4002b98SHong Zhang MatEqual_SeqSELL, 1746d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1747d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1748d4002b98SHong Zhang 0, 1749d4002b98SHong Zhang /* 20*/ 0, 1750d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1751d4002b98SHong Zhang MatSetOption_SeqSELL, 1752d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1753d4002b98SHong Zhang /* 24*/ 0, 1754d4002b98SHong Zhang 0, 1755d4002b98SHong Zhang 0, 1756d4002b98SHong Zhang 0, 1757d4002b98SHong Zhang 0, 1758d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1759d4002b98SHong Zhang 0, 1760d4002b98SHong Zhang 0, 1761d4002b98SHong Zhang 0, 1762d4002b98SHong Zhang 0, 1763d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1764d4002b98SHong Zhang 0, 1765d4002b98SHong Zhang 0, 1766d4002b98SHong Zhang 0, 1767d4002b98SHong Zhang 0, 1768d4002b98SHong Zhang /* 39*/ 0, 1769d4002b98SHong Zhang 0, 1770d4002b98SHong Zhang 0, 1771d4002b98SHong Zhang MatGetValues_SeqSELL, 1772d4002b98SHong Zhang MatCopy_SeqSELL, 1773d4002b98SHong Zhang /* 44*/ 0, 1774d4002b98SHong Zhang MatScale_SeqSELL, 1775d4002b98SHong Zhang MatShift_SeqSELL, 1776d4002b98SHong Zhang 0, 1777d4002b98SHong Zhang 0, 1778d4002b98SHong Zhang /* 49*/ 0, 1779d4002b98SHong Zhang 0, 1780d4002b98SHong Zhang 0, 1781d4002b98SHong Zhang 0, 1782d4002b98SHong Zhang 0, 1783d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1784d4002b98SHong Zhang 0, 1785d4002b98SHong Zhang 0, 1786d4002b98SHong Zhang 0, 1787d4002b98SHong Zhang 0, 1788d4002b98SHong Zhang /* 59*/ 0, 1789d4002b98SHong Zhang MatDestroy_SeqSELL, 1790d4002b98SHong Zhang MatView_SeqSELL, 1791d4002b98SHong Zhang 0, 1792d4002b98SHong Zhang 0, 1793d4002b98SHong Zhang /* 64*/ 0, 1794d4002b98SHong Zhang 0, 1795d4002b98SHong Zhang 0, 1796d4002b98SHong Zhang 0, 1797d4002b98SHong Zhang 0, 1798d4002b98SHong Zhang /* 69*/ 0, 1799d4002b98SHong Zhang 0, 1800d4002b98SHong Zhang 0, 1801d4002b98SHong Zhang 0, 1802d4002b98SHong Zhang 0, 1803d4002b98SHong Zhang /* 74*/ 0, 1804d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1805d4002b98SHong Zhang 0, 1806d4002b98SHong Zhang 0, 1807d4002b98SHong Zhang 0, 1808d4002b98SHong Zhang /* 79*/ 0, 1809d4002b98SHong Zhang 0, 1810d4002b98SHong Zhang 0, 1811d4002b98SHong Zhang 0, 1812d4002b98SHong Zhang 0, 1813d4002b98SHong Zhang /* 84*/ 0, 1814d4002b98SHong Zhang 0, 1815d4002b98SHong Zhang 0, 1816d4002b98SHong Zhang 0, 1817d4002b98SHong Zhang 0, 1818d4002b98SHong Zhang /* 89*/ 0, 1819d4002b98SHong Zhang 0, 1820d4002b98SHong Zhang 0, 1821d4002b98SHong Zhang 0, 1822d4002b98SHong Zhang 0, 1823d4002b98SHong Zhang /* 94*/ 0, 1824d4002b98SHong Zhang 0, 1825d4002b98SHong Zhang 0, 1826d4002b98SHong Zhang 0, 1827d4002b98SHong Zhang 0, 1828d4002b98SHong Zhang /* 99*/ 0, 1829d4002b98SHong Zhang 0, 1830d4002b98SHong Zhang 0, 1831d4002b98SHong Zhang MatConjugate_SeqSELL, 1832d4002b98SHong Zhang 0, 1833d4002b98SHong Zhang /*104*/ 0, 1834d4002b98SHong Zhang 0, 1835d4002b98SHong Zhang 0, 1836d4002b98SHong Zhang 0, 1837d4002b98SHong Zhang 0, 1838d4002b98SHong Zhang /*109*/ 0, 1839d4002b98SHong Zhang 0, 1840d4002b98SHong Zhang 0, 1841d4002b98SHong Zhang 0, 1842d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1843d4002b98SHong Zhang /*114*/ 0, 1844d4002b98SHong Zhang 0, 1845d4002b98SHong Zhang 0, 1846d4002b98SHong Zhang 0, 1847d4002b98SHong Zhang 0, 1848d4002b98SHong Zhang /*119*/ 0, 1849d4002b98SHong Zhang 0, 1850d4002b98SHong Zhang 0, 1851d4002b98SHong Zhang 0, 1852d4002b98SHong Zhang 0, 1853d4002b98SHong Zhang /*124*/ 0, 1854d4002b98SHong Zhang 0, 1855d4002b98SHong Zhang 0, 1856d4002b98SHong Zhang 0, 1857d4002b98SHong Zhang 0, 1858d4002b98SHong Zhang /*129*/ 0, 1859d4002b98SHong Zhang 0, 1860d4002b98SHong Zhang 0, 1861d4002b98SHong Zhang 0, 1862d4002b98SHong Zhang 0, 1863d4002b98SHong Zhang /*134*/ 0, 1864d4002b98SHong Zhang 0, 1865d4002b98SHong Zhang 0, 1866d4002b98SHong Zhang 0, 1867d4002b98SHong Zhang 0, 1868d4002b98SHong Zhang /*139*/ 0, 1869d4002b98SHong Zhang 0, 1870d4002b98SHong Zhang 0, 1871d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1872d4002b98SHong Zhang 0, 1873d4002b98SHong Zhang /*144*/0 1874d4002b98SHong Zhang }; 1875d4002b98SHong Zhang 1876d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1877d4002b98SHong Zhang { 1878d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1879d4002b98SHong Zhang PetscErrorCode ierr; 1880d4002b98SHong Zhang 1881d4002b98SHong Zhang PetscFunctionBegin; 1882d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1883d4002b98SHong Zhang 1884d4002b98SHong Zhang /* allocate space for values if not already there */ 1885d4002b98SHong Zhang if (!a->saved_values) { 1886d4002b98SHong Zhang ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr); 1887d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr); 1888d4002b98SHong Zhang } 1889d4002b98SHong Zhang 1890d4002b98SHong Zhang /* copy values over */ 1891d4002b98SHong Zhang ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1892d4002b98SHong Zhang PetscFunctionReturn(0); 1893d4002b98SHong Zhang } 1894d4002b98SHong Zhang 1895d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1896d4002b98SHong Zhang { 1897d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1898d4002b98SHong Zhang PetscErrorCode ierr; 1899d4002b98SHong Zhang 1900d4002b98SHong Zhang PetscFunctionBegin; 1901d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1902d4002b98SHong Zhang if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1903d4002b98SHong Zhang /* copy values over */ 1904d4002b98SHong Zhang ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1905d4002b98SHong Zhang PetscFunctionReturn(0); 1906d4002b98SHong Zhang } 1907d4002b98SHong Zhang 1908d4002b98SHong Zhang /*@C 1909d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1910d4002b98SHong Zhang 1911d4002b98SHong Zhang Not Collective 1912d4002b98SHong Zhang 1913d4002b98SHong Zhang Input Parameters: 1914d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1915d4002b98SHong Zhang . array - pointer to the data 1916d4002b98SHong Zhang 1917d4002b98SHong Zhang Level: intermediate 1918d4002b98SHong Zhang 1919d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1920d4002b98SHong Zhang @*/ 1921d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1922d4002b98SHong Zhang { 1923d4002b98SHong Zhang PetscErrorCode ierr; 1924d4002b98SHong Zhang 1925d4002b98SHong Zhang PetscFunctionBegin; 1926d4002b98SHong Zhang ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 1927d4002b98SHong Zhang PetscFunctionReturn(0); 1928d4002b98SHong Zhang } 1929d4002b98SHong Zhang 1930d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1931d4002b98SHong Zhang { 1932d4002b98SHong Zhang Mat_SeqSELL *b; 1933d4002b98SHong Zhang PetscMPIInt size; 1934d4002b98SHong Zhang PetscErrorCode ierr; 1935d4002b98SHong Zhang 1936d4002b98SHong Zhang PetscFunctionBegin; 1937d4002b98SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1938d4002b98SHong Zhang if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1939d4002b98SHong Zhang 1940d4002b98SHong Zhang ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1941d4002b98SHong Zhang 1942d4002b98SHong Zhang B->data = (void*)b; 1943d4002b98SHong Zhang 1944d4002b98SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1945d4002b98SHong Zhang 1946d4002b98SHong Zhang b->row = 0; 1947d4002b98SHong Zhang b->col = 0; 1948d4002b98SHong Zhang b->icol = 0; 1949d4002b98SHong Zhang b->reallocs = 0; 1950d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1951d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1952d4002b98SHong Zhang b->nonew = 0; 1953d4002b98SHong Zhang b->diag = 0; 1954d4002b98SHong Zhang b->solve_work = 0; 1955d4002b98SHong Zhang B->spptr = 0; 1956d4002b98SHong Zhang b->saved_values = 0; 1957d4002b98SHong Zhang b->idiag = 0; 1958d4002b98SHong Zhang b->mdiag = 0; 1959d4002b98SHong Zhang b->ssor_work = 0; 1960d4002b98SHong Zhang b->omega = 1.0; 1961d4002b98SHong Zhang b->fshift = 0.0; 1962d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1963d4002b98SHong Zhang b->ibdiagvalid = PETSC_FALSE; 1964d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1965d4002b98SHong Zhang 1966d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr); 1967d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr); 1968d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr); 1969d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr); 1970d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr); 1971d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr); 1972d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr); 1973d4002b98SHong Zhang PetscFunctionReturn(0); 1974d4002b98SHong Zhang } 1975d4002b98SHong Zhang 1976d4002b98SHong Zhang /* 1977d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1978d4002b98SHong Zhang */ 1979d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1980d4002b98SHong Zhang { 1981d4002b98SHong Zhang Mat_SeqSELL *c,*a=(Mat_SeqSELL*)A->data; 1982d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1983d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1984d4002b98SHong Zhang PetscErrorCode ierr; 1985d4002b98SHong Zhang 1986d4002b98SHong Zhang PetscFunctionBegin; 1987d4002b98SHong Zhang c = (Mat_SeqSELL*)C->data; 1988d4002b98SHong Zhang 1989d4002b98SHong Zhang C->factortype = A->factortype; 1990d4002b98SHong Zhang c->row = 0; 1991d4002b98SHong Zhang c->col = 0; 1992d4002b98SHong Zhang c->icol = 0; 1993d4002b98SHong Zhang c->reallocs = 0; 1994d4002b98SHong Zhang 1995d4002b98SHong Zhang C->assembled = PETSC_TRUE; 1996d4002b98SHong Zhang 1997d4002b98SHong Zhang ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 1998d4002b98SHong Zhang ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 1999d4002b98SHong Zhang 2000d4002b98SHong Zhang ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr); 2001d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2002d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr); 2003d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 2004d4002b98SHong Zhang 2005d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 2006d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 2007d4002b98SHong Zhang 2008d4002b98SHong Zhang /* allocate the matrix space */ 2009d4002b98SHong Zhang if (mallocmatspace) { 2010d4002b98SHong Zhang ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr); 2011d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2012d4002b98SHong Zhang 2013d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2014d4002b98SHong Zhang 2015d4002b98SHong Zhang if (m > 0) { 2016d4002b98SHong Zhang ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr); 2017d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 2018d4002b98SHong Zhang ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 2019d4002b98SHong Zhang } else { 2020d4002b98SHong Zhang ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 2021d4002b98SHong Zhang } 2022d4002b98SHong Zhang } 2023d4002b98SHong Zhang } 2024d4002b98SHong Zhang 2025d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2026d4002b98SHong Zhang c->roworiented = a->roworiented; 2027d4002b98SHong Zhang c->nonew = a->nonew; 2028d4002b98SHong Zhang if (a->diag) { 2029d4002b98SHong Zhang ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr); 2030d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2031d4002b98SHong Zhang for (i=0; i<m; i++) { 2032d4002b98SHong Zhang c->diag[i] = a->diag[i]; 2033d4002b98SHong Zhang } 2034d4002b98SHong Zhang } else c->diag = 0; 2035d4002b98SHong Zhang 2036d4002b98SHong Zhang c->solve_work = 0; 2037d4002b98SHong Zhang c->saved_values = 0; 2038d4002b98SHong Zhang c->idiag = 0; 2039d4002b98SHong Zhang c->ssor_work = 0; 2040d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2041d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2042d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2043d4002b98SHong Zhang 2044d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2045d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2046d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2047d4002b98SHong Zhang c->nz = a->nz; 2048d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2049d4002b98SHong Zhang 2050d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2051d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2052d4002b98SHong Zhang 2053d4002b98SHong Zhang ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 2054d4002b98SHong Zhang PetscFunctionReturn(0); 2055d4002b98SHong Zhang } 2056d4002b98SHong Zhang 2057d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 2058d4002b98SHong Zhang { 2059d4002b98SHong Zhang PetscErrorCode ierr; 2060d4002b98SHong Zhang 2061d4002b98SHong Zhang PetscFunctionBegin; 2062d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 2063d4002b98SHong Zhang ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 2064d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 2065d4002b98SHong Zhang ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr); 2066d4002b98SHong Zhang } 2067d4002b98SHong Zhang ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr); 2068d4002b98SHong Zhang ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 2069d4002b98SHong Zhang PetscFunctionReturn(0); 2070d4002b98SHong Zhang } 2071d4002b98SHong Zhang 2072d4002b98SHong Zhang /*@C 2073d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 2074d4002b98SHong Zhang 2075d4002b98SHong Zhang Collective on MPI_Comm 2076d4002b98SHong Zhang 2077d4002b98SHong Zhang Input Parameters: 2078d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2079d4002b98SHong Zhang . m - number of rows 2080d4002b98SHong Zhang . n - number of columns 2081d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2082d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2083d4002b98SHong Zhang (possibly different for each row) or NULL 2084d4002b98SHong Zhang 2085d4002b98SHong Zhang Output Parameter: 2086d4002b98SHong Zhang . A - the matrix 2087d4002b98SHong Zhang 2088d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2089d4002b98SHong Zhang MatXXXXSetPreallocation() paradgm instead of this routine directly. 2090d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 2091d4002b98SHong Zhang 2092d4002b98SHong Zhang Notes: 2093d4002b98SHong Zhang If nnz is given then nz is ignored 2094d4002b98SHong Zhang 2095d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2096d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2097d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2098d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2099d4002b98SHong Zhang 2100d4002b98SHong Zhang Level: intermediate 2101d4002b98SHong Zhang 2102d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays() 2103d4002b98SHong Zhang 2104d4002b98SHong Zhang @*/ 2105d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2106d4002b98SHong Zhang { 2107d4002b98SHong Zhang PetscErrorCode ierr; 2108d4002b98SHong Zhang 2109d4002b98SHong Zhang PetscFunctionBegin; 2110d4002b98SHong Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 2111d4002b98SHong Zhang ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2112d4002b98SHong Zhang ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr); 2113d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr); 2114d4002b98SHong Zhang PetscFunctionReturn(0); 2115d4002b98SHong Zhang } 2116d4002b98SHong Zhang 2117d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2118d4002b98SHong Zhang { 2119d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2120d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2121d4002b98SHong Zhang PetscErrorCode ierr; 2122d4002b98SHong Zhang 2123d4002b98SHong Zhang PetscFunctionBegin; 2124d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2125d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2126d4002b98SHong Zhang *flg = PETSC_FALSE; 2127d4002b98SHong Zhang PetscFunctionReturn(0); 2128d4002b98SHong Zhang } 2129d4002b98SHong Zhang /* if the a->colidx are the same */ 2130d4002b98SHong Zhang ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr); 2131d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2132d4002b98SHong Zhang /* if a->val are the same */ 2133d4002b98SHong Zhang ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr); 2134d4002b98SHong Zhang PetscFunctionReturn(0); 2135d4002b98SHong Zhang } 2136d4002b98SHong Zhang 2137d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2138d4002b98SHong Zhang { 2139d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2140d4002b98SHong Zhang 2141d4002b98SHong Zhang PetscFunctionBegin; 2142d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2143d4002b98SHong Zhang a->ibdiagvalid = PETSC_FALSE; 2144d4002b98SHong Zhang PetscFunctionReturn(0); 2145d4002b98SHong Zhang } 2146d4002b98SHong Zhang 2147d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2148d4002b98SHong Zhang { 2149d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2150d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2151d4002b98SHong Zhang PetscInt i; 2152d4002b98SHong Zhang PetscScalar *val = a->val; 2153d4002b98SHong Zhang 2154d4002b98SHong Zhang PetscFunctionBegin; 2155d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2156d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2157d4002b98SHong Zhang } 2158d4002b98SHong Zhang #else 2159d4002b98SHong Zhang PetscFunctionBegin; 2160d4002b98SHong Zhang #endif 2161d4002b98SHong Zhang PetscFunctionReturn(0); 2162d4002b98SHong Zhang } 2163