xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 68aafef34f4f37251d20f2f7b9dc5fe912d64cb5)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h>  /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H)
9d4002b98SHong Zhang   #include <immintrin.h>
10d4002b98SHong Zhang 
11d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
12d4002b98SHong Zhang   #define _MM_SCALE_8    8
13d4002b98SHong Zhang   #endif
14d4002b98SHong Zhang 
15d4002b98SHong Zhang   #if defined(__AVX512F__)
16d4002b98SHong Zhang   /* these do not work
17d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
18d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
19d4002b98SHong Zhang   */
20d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
21d4002b98SHong Zhang     /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
22d4002b98SHong Zhang     vec_idx  = _mm256_load_si256((__m256i const*)acolidx); \
23d4002b98SHong Zhang     vec_vals = _mm512_load_pd(aval); \
24d4002b98SHong Zhang     vec_x    = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \
25a48a6482SHong Zhang     vec_y    = _mm512_fmadd_pd(vec_x,vec_vals,vec_y)
26a48a6482SHong Zhang   #elif defined(__AVX2__)
27a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
28a48a6482SHong Zhang     vec_vals = _mm256_load_pd(aval); \
29a48a6482SHong Zhang     vec_idx  =  _mm_load_si128((__m128i const*)acolidx); /* SSE2 */ \
30a48a6482SHong Zhang     vec_x    = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \
31a48a6482SHong Zhang     vec_y    = _mm256_fmadd_pd(vec_x,vec_vals,vec_y)
32d4002b98SHong Zhang   #endif
33d4002b98SHong Zhang #endif  /* PETSC_HAVE_IMMINTRIN_H */
34d4002b98SHong Zhang 
35d4002b98SHong Zhang /*@C
36d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
37d4002b98SHong Zhang  the user should preallocate the matrix storage by setting the parameter nz
38d4002b98SHong Zhang  (or the array nnz).  By setting these parameters accurately, performance
39d4002b98SHong Zhang  during matrix assembly can be increased significantly.
40d4002b98SHong Zhang 
41d4002b98SHong Zhang  Collective on MPI_Comm
42d4002b98SHong Zhang 
43d4002b98SHong Zhang  Input Parameters:
44d4002b98SHong Zhang  +  B - The matrix
45d4002b98SHong Zhang  .  nz - number of nonzeros per row (same for all rows)
46d4002b98SHong Zhang  -  nnz - array containing the number of nonzeros in the various rows
47d4002b98SHong Zhang  (possibly different for each row) or NULL
48d4002b98SHong Zhang 
49d4002b98SHong Zhang  Notes:
50d4002b98SHong Zhang  If nnz is given then nz is ignored.
51d4002b98SHong Zhang 
52d4002b98SHong Zhang  Specify the preallocated storage with either nz or nnz (not both).
53d4002b98SHong Zhang  Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
54d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
55d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
56d4002b98SHong Zhang 
57d4002b98SHong Zhang  You can call MatGetInfo() to get information on how effective the preallocation was;
58d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
59d4002b98SHong Zhang  You can also run with the option -info and look for messages with the string
60d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
61d4002b98SHong Zhang 
62d4002b98SHong Zhang  Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix
63d4002b98SHong Zhang  entries or columns indices.
64d4002b98SHong Zhang 
65d4002b98SHong Zhang  The maximum number of nonzeos in any row should be as accuate as possible.
66d4002b98SHong Zhang  If it is underesitmated, you will get bad performance due to reallocation
67d4002b98SHong Zhang  (MatSeqXSELLReallocateSELL).
68d4002b98SHong Zhang 
69d4002b98SHong Zhang  Level: intermediate
70d4002b98SHong Zhang 
71d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo()
72d4002b98SHong Zhang 
73d4002b98SHong Zhang  @*/
74d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])
75d4002b98SHong Zhang {
76d4002b98SHong Zhang   PetscErrorCode ierr;
77d4002b98SHong Zhang 
78d4002b98SHong Zhang   PetscFunctionBegin;
79d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
80d4002b98SHong Zhang   PetscValidType(B,1);
81d4002b98SHong Zhang   ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr);
82d4002b98SHong Zhang   PetscFunctionReturn(0);
83d4002b98SHong Zhang }
84d4002b98SHong Zhang 
85d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])
86d4002b98SHong Zhang {
87d4002b98SHong Zhang   Mat_SeqSELL    *b;
88d4002b98SHong Zhang   PetscInt       i,j,totalslices;
89d4002b98SHong Zhang   PetscBool      skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE;
90d4002b98SHong Zhang   PetscErrorCode ierr;
91d4002b98SHong Zhang 
92d4002b98SHong Zhang   PetscFunctionBegin;
93d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
94d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
95d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
96d4002b98SHong Zhang     maxallocrow    = 0;
97d4002b98SHong Zhang   }
98d4002b98SHong Zhang 
99d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
100d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
101d4002b98SHong Zhang 
102d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
103d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
104d4002b98SHong Zhang   if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow);
105d4002b98SHong Zhang   if (rlen) {
106d4002b98SHong Zhang     for (i=0; i<B->rmap->n; i++) {
107d4002b98SHong Zhang       if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]);
108d4002b98SHong Zhang       if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n);
109d4002b98SHong Zhang     }
110d4002b98SHong Zhang   }
111d4002b98SHong Zhang 
112d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
113d4002b98SHong Zhang 
114d4002b98SHong Zhang   b = (Mat_SeqSELL*)B->data;
115d4002b98SHong Zhang 
116d4002b98SHong Zhang   totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */
117d4002b98SHong Zhang   b->totalslices = totalslices;
118d4002b98SHong Zhang   if (!skipallocation) {
119d4002b98SHong Zhang     if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n);
120d4002b98SHong Zhang 
121d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
122d4002b98SHong Zhang       ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr);
123d4002b98SHong Zhang       ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
124d4002b98SHong Zhang     }
125d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
126d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
127d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
128d4002b98SHong Zhang       for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow;
129d4002b98SHong Zhang     } else {
130d4002b98SHong Zhang       maxallocrow = 0;
131d4002b98SHong Zhang       b->sliidx[0] = 0;
132d4002b98SHong Zhang       for (i=1; i<totalslices; i++) {
133d4002b98SHong Zhang         b->sliidx[i] = 0;
134d4002b98SHong Zhang         for (j=0;j<8;j++) {
135d4002b98SHong Zhang           b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]);
136d4002b98SHong Zhang         }
137d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i],maxallocrow);
138d4002b98SHong Zhang         b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i];
139d4002b98SHong Zhang       }
140d4002b98SHong Zhang       /* last slice */
141d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
142d4002b98SHong Zhang       for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]);
143d4002b98SHong Zhang       maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow);
144d4002b98SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices];
145d4002b98SHong Zhang     }
146d4002b98SHong Zhang 
147d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
148d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
149d4002b98SHong Zhang     ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr);
150d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
151d4002b98SHong Zhang     ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr);
152d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
153d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
154d4002b98SHong Zhang     ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr);
155d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr);
156d4002b98SHong Zhang 
157d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
158d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
159d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
160d4002b98SHong Zhang   } else {
161d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
162d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
163d4002b98SHong Zhang   }
164d4002b98SHong Zhang 
165d4002b98SHong Zhang   b->nz               = 0;
166d4002b98SHong Zhang   b->maxallocrow      = maxallocrow;
167d4002b98SHong Zhang   b->rlenmax          = maxallocrow;
168d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
169d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
170d4002b98SHong Zhang   if (realalloc) {
171d4002b98SHong Zhang     ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
172d4002b98SHong Zhang   }
173d4002b98SHong Zhang   PetscFunctionReturn(0);
174d4002b98SHong Zhang }
175d4002b98SHong Zhang 
1766108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1776108893eSStefano Zampini {
1786108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL*)A->data;
1796108893eSStefano Zampini   PetscInt    shift;
1806108893eSStefano Zampini 
1816108893eSStefano Zampini   PetscFunctionBegin;
1826108893eSStefano Zampini   if (row < 0 || row >= A->rmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range",row);
1836108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
1846108893eSStefano Zampini   shift = a->sliidx[row>>3]+(row&0x07);
1856108893eSStefano Zampini   if (!a->getrowcols) {
1866108893eSStefano Zampini     PetscErrorCode ierr;
1876108893eSStefano Zampini 
1886108893eSStefano Zampini     ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr);
1896108893eSStefano Zampini   }
1906108893eSStefano Zampini   if (idx) {
1916108893eSStefano Zampini     PetscInt j;
1926108893eSStefano Zampini     for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j];
1936108893eSStefano Zampini     *idx = a->getrowcols;
1946108893eSStefano Zampini   }
1956108893eSStefano Zampini   if (v) {
1966108893eSStefano Zampini     PetscInt j;
1976108893eSStefano Zampini     for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j];
1986108893eSStefano Zampini     *v = a->getrowvals;
1996108893eSStefano Zampini   }
2006108893eSStefano Zampini   PetscFunctionReturn(0);
2016108893eSStefano Zampini }
2026108893eSStefano Zampini 
2036108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
2046108893eSStefano Zampini {
2056108893eSStefano Zampini   PetscFunctionBegin;
2066108893eSStefano Zampini   PetscFunctionReturn(0);
2076108893eSStefano Zampini }
2086108893eSStefano Zampini 
209d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
210d4002b98SHong Zhang {
211d4002b98SHong Zhang   Mat            B;
212d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
213e3f1f374SStefano Zampini   PetscInt       i;
214d4002b98SHong Zhang   PetscErrorCode ierr;
215d4002b98SHong Zhang 
216d4002b98SHong Zhang   PetscFunctionBegin;
217ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
218ad013a7bSRichard Tran Mills     B    = *newmat;
219e3f1f374SStefano Zampini     ierr = MatZeroEntries(B);CHKERRQ(ierr);
220ad013a7bSRichard Tran Mills   } else {
221d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
222d4002b98SHong Zhang     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
223d4002b98SHong Zhang     ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
224d4002b98SHong Zhang     ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr);
225ad013a7bSRichard Tran Mills   }
226d4002b98SHong Zhang 
227e3f1f374SStefano Zampini   for (i=0; i<A->rmap->n; i++) {
228e3f1f374SStefano Zampini     PetscInt    nz,*cols;
229e3f1f374SStefano Zampini     PetscScalar *vals;
230e3f1f374SStefano Zampini 
231e3f1f374SStefano Zampini     ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr);
232e3f1f374SStefano Zampini     ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
233e3f1f374SStefano Zampini     ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr);
234d4002b98SHong Zhang   }
235e3f1f374SStefano Zampini 
236d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
237d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
238d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
239d4002b98SHong Zhang 
240d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
241d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
242d4002b98SHong Zhang   } else {
243d4002b98SHong Zhang     *newmat = B;
244d4002b98SHong Zhang   }
245d4002b98SHong Zhang   PetscFunctionReturn(0);
246d4002b98SHong Zhang }
247d4002b98SHong Zhang 
248d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
249d4002b98SHong Zhang 
250d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
251d4002b98SHong Zhang {
252d4002b98SHong Zhang   Mat               B;
253d4002b98SHong Zhang   Mat_SeqAIJ        *a=(Mat_SeqAIJ*)A->data;
254d4002b98SHong Zhang   PetscInt          *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols;
255d4002b98SHong Zhang   const PetscInt    *cols;
256d4002b98SHong Zhang   const PetscScalar *vals;
257d4002b98SHong Zhang   PetscErrorCode    ierr;
258d4002b98SHong Zhang 
259d4002b98SHong Zhang   PetscFunctionBegin;
260d4002b98SHong Zhang   if (A->rmap->bs > 1) {
261d4002b98SHong Zhang     ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr);
262d4002b98SHong Zhang     PetscFunctionReturn(0);
263d4002b98SHong Zhang   }
264ad013a7bSRichard Tran Mills 
265ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
266ad013a7bSRichard Tran Mills     B = *newmat;
267ad013a7bSRichard Tran Mills   } else {
268d4002b98SHong Zhang     /* Can we just use ilen? */
269d4002b98SHong Zhang     ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr);
270d4002b98SHong Zhang     for (i=0; i<m; i++) {
271d4002b98SHong Zhang       rowlengths[i] = ai[i+1] - ai[i];
272d4002b98SHong Zhang     }
273d4002b98SHong Zhang 
274d4002b98SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
275d4002b98SHong Zhang     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
276d4002b98SHong Zhang     ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr);
277d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr);
278d4002b98SHong Zhang     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
279ad013a7bSRichard Tran Mills   }
280d4002b98SHong Zhang 
281d4002b98SHong Zhang   for (row=0; row<m; row++) {
282d4002b98SHong Zhang     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
283d4002b98SHong Zhang     ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
284d4002b98SHong Zhang     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
285d4002b98SHong Zhang   }
286d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
287d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
288d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
289d4002b98SHong Zhang 
290d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
291d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
292d4002b98SHong Zhang   } else {
293d4002b98SHong Zhang     *newmat = B;
294d4002b98SHong Zhang   }
295d4002b98SHong Zhang   PetscFunctionReturn(0);
296d4002b98SHong Zhang }
297d4002b98SHong Zhang 
298d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy)
299d4002b98SHong Zhang {
300d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
301d4002b98SHong Zhang   PetscScalar       *y;
302d4002b98SHong Zhang   const PetscScalar *x;
303d4002b98SHong Zhang   const MatScalar   *aval=a->val;
304d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
305d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
3067285fed1SHong Zhang   PetscInt          i,j;
307d4002b98SHong Zhang   PetscErrorCode    ierr;
308d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
309d4002b98SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
310d4002b98SHong Zhang   __m256i           vec_idx;
311d4002b98SHong Zhang   __mmask8          mask;
312d4002b98SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
313d4002b98SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
314a48a6482SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
315a48a6482SHong Zhang   __m128i           vec_idx;
316a48a6482SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
317a48a6482SHong Zhang   MatScalar         yval;
318a48a6482SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
319d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
320d4002b98SHong Zhang   __m128d           vec_x_tmp;
321d4002b98SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
322d4002b98SHong Zhang   MatScalar         yval;
323d4002b98SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
324d4002b98SHong Zhang #else
325d4002b98SHong Zhang   PetscScalar       sum[8];
326d4002b98SHong Zhang #endif
327d4002b98SHong Zhang 
328d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
329d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
330d4002b98SHong Zhang #endif
331d4002b98SHong Zhang 
332d4002b98SHong Zhang   PetscFunctionBegin;
333d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
334d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
335d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
336d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
337d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
338d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
339d4002b98SHong Zhang 
340d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
341d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
342d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
343d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
344d4002b98SHong Zhang 
34538efe8efSHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
346d4002b98SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
347d4002b98SHong Zhang     case 3:
348d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
349d4002b98SHong Zhang       acolidx += 8; aval += 8;
350d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
351d4002b98SHong Zhang       acolidx += 8; aval += 8;
352d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
353d4002b98SHong Zhang       acolidx += 8; aval += 8;
354d4002b98SHong Zhang       j += 3;
355d4002b98SHong Zhang       break;
356d4002b98SHong Zhang     case 2:
357d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
358d4002b98SHong Zhang       acolidx += 8; aval += 8;
359d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
360d4002b98SHong Zhang       acolidx += 8; aval += 8;
361d4002b98SHong Zhang       j += 2;
362d4002b98SHong Zhang       break;
363d4002b98SHong Zhang     case 1:
364d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
365d4002b98SHong Zhang       acolidx += 8; aval += 8;
366d4002b98SHong Zhang       j += 1;
367d4002b98SHong Zhang       break;
368d4002b98SHong Zhang     }
369d4002b98SHong Zhang     #pragma novector
370d4002b98SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
371d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
372d4002b98SHong Zhang       acolidx += 8; aval += 8;
373d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
374d4002b98SHong Zhang       acolidx += 8; aval += 8;
375d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
376d4002b98SHong Zhang       acolidx += 8; aval += 8;
377d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
378d4002b98SHong Zhang       acolidx += 8; aval += 8;
379d4002b98SHong Zhang     }
380d4002b98SHong Zhang 
381d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
382d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
383d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
384d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
385d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
386d4002b98SHong Zhang       _mm512_mask_store_pd(&y[8*i],mask,vec_y);
387d4002b98SHong Zhang     } else {
388d4002b98SHong Zhang       _mm512_store_pd(&y[8*i],vec_y);
389d4002b98SHong Zhang     }
390d4002b98SHong Zhang   }
391a48a6482SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
392a48a6482SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
393a48a6482SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
394a48a6482SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
395a48a6482SHong Zhang 
396a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
397a48a6482SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
398a48a6482SHong Zhang       rows_left = A->rmap->n - 8*i;
399a48a6482SHong Zhang       for (r=0; r<rows_left; ++r) {
400a48a6482SHong Zhang         yval = (MatScalar)0;
401a48a6482SHong Zhang         row = 8*i + r;
402a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
403a48a6482SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
404a48a6482SHong Zhang         y[row] = yval;
405a48a6482SHong Zhang       }
406a48a6482SHong Zhang       break;
407a48a6482SHong Zhang     }
408a48a6482SHong Zhang 
409a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
410a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
411a48a6482SHong Zhang 
412a48a6482SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
413a48a6482SHong Zhang     #pragma novector
414a48a6482SHong Zhang     #pragma unroll(2)
415a48a6482SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
416a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
417a48a6482SHong Zhang       aval += 4; acolidx += 4;
418a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2);
419a48a6482SHong Zhang       aval += 4; acolidx += 4;
420a48a6482SHong Zhang     }
421a48a6482SHong Zhang 
422a48a6482SHong Zhang     _mm256_store_pd(y+i*8,vec_y);
423a48a6482SHong Zhang     _mm256_store_pd(y+i*8+4,vec_y2);
424a48a6482SHong Zhang   }
425d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
426d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
427d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
428d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
429d4002b98SHong Zhang 
430d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
431d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
432d4002b98SHong Zhang 
433d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
434d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
435d4002b98SHong Zhang       rows_left = A->rmap->n - 8*i;
436d4002b98SHong Zhang       for (r=0; r<rows_left; ++r) {
437d4002b98SHong Zhang         yval = (MatScalar)0;
438d4002b98SHong Zhang         row = 8*i + r;
439d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
440d4002b98SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]];
441d4002b98SHong Zhang         y[row] = yval;
442d4002b98SHong Zhang       }
443d4002b98SHong Zhang       break;
444d4002b98SHong Zhang     }
445d4002b98SHong Zhang 
446d4002b98SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
447a48a6482SHong Zhang     #pragma novector
448a48a6482SHong Zhang     #pragma unroll(2)
4497285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
450d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
451d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
452d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
453d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
454d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
455d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
456d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
457d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
458d4002b98SHong Zhang       aval     += 4;
459d4002b98SHong Zhang 
460d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
461d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
462d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
463d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
464d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
465d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
466d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
467d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
468d4002b98SHong Zhang       aval     += 4;
469d4002b98SHong Zhang     }
470d4002b98SHong Zhang 
471d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8,     vec_y);
472d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8 + 4, vec_y2);
473d4002b98SHong Zhang   }
474d4002b98SHong Zhang #else
475d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
476d4002b98SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
477d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
478d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
479d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
480d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
481d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
482d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
483d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
484d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
485d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
486d4002b98SHong Zhang     }
487d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */
488d4002b98SHong Zhang       for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j];
489d4002b98SHong Zhang     } else {
4907285fed1SHong Zhang       for(j=0; j<8; j++) y[8*i+j] = sum[j];
491d4002b98SHong Zhang     }
492d4002b98SHong Zhang   }
493d4002b98SHong Zhang #endif
494d4002b98SHong Zhang 
495d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */
496d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
497d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
498d4002b98SHong Zhang   PetscFunctionReturn(0);
499d4002b98SHong Zhang }
500d4002b98SHong Zhang 
501d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
502d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)
503d4002b98SHong Zhang {
504d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
505d4002b98SHong Zhang   PetscScalar       *y,*z;
506d4002b98SHong Zhang   const PetscScalar *x;
507d4002b98SHong Zhang   const MatScalar   *aval=a->val;
508d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
509d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
510d4002b98SHong Zhang   PetscInt          i,j;
511d4002b98SHong Zhang   PetscErrorCode    ierr;
512d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5137285fed1SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
514d4002b98SHong Zhang   __m256i           vec_idx;
515d4002b98SHong Zhang   __mmask8          mask;
5167285fed1SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
5177285fed1SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
5187285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
5197285fed1SHong Zhang   __m128d           vec_x_tmp;
5207285fed1SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
5217285fed1SHong Zhang   MatScalar         yval;
5227285fed1SHong Zhang   PetscInt          r,row,nnz_in_row;
523d4002b98SHong Zhang #else
524d4002b98SHong Zhang   PetscScalar       sum[8];
525d4002b98SHong Zhang #endif
526d4002b98SHong Zhang 
527d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
528d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
529d4002b98SHong Zhang #endif
530d4002b98SHong Zhang 
531d4002b98SHong Zhang   PetscFunctionBegin;
532d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
533d4002b98SHong Zhang   ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
534d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5357285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
5367285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5377285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5387285fed1SHong Zhang 
539d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
540d4002b98SHong Zhang       mask   = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
5417285fed1SHong Zhang       vec_y  = _mm512_mask_load_pd(vec_y,mask,&y[8*i]);
5427285fed1SHong Zhang     } else {
5437285fed1SHong Zhang       vec_y  = _mm512_load_pd(&y[8*i]);
5447285fed1SHong Zhang     }
5457285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5467285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5477285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5487285fed1SHong Zhang 
5497285fed1SHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
5507285fed1SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
5517285fed1SHong Zhang     case 3:
5527285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5537285fed1SHong Zhang       acolidx += 8; aval += 8;
5547285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5557285fed1SHong Zhang       acolidx += 8; aval += 8;
5567285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
5577285fed1SHong Zhang       acolidx += 8; aval += 8;
5587285fed1SHong Zhang       j += 3;
5597285fed1SHong Zhang       break;
5607285fed1SHong Zhang     case 2:
5617285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5627285fed1SHong Zhang       acolidx += 8; aval += 8;
5637285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5647285fed1SHong Zhang       acolidx += 8; aval += 8;
5657285fed1SHong Zhang       j += 2;
5667285fed1SHong Zhang       break;
5677285fed1SHong Zhang     case 1:
5687285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5697285fed1SHong Zhang       acolidx += 8; aval += 8;
5707285fed1SHong Zhang       j += 1;
5717285fed1SHong Zhang       break;
5727285fed1SHong Zhang     }
5737285fed1SHong Zhang     #pragma novector
5747285fed1SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
5757285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
5767285fed1SHong Zhang       acolidx += 8; aval += 8;
5777285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
5787285fed1SHong Zhang       acolidx += 8; aval += 8;
5797285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
5807285fed1SHong Zhang       acolidx += 8; aval += 8;
5817285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
5827285fed1SHong Zhang       acolidx += 8; aval += 8;
5837285fed1SHong Zhang     }
5847285fed1SHong Zhang 
5857285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
5867285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
5877285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
5887285fed1SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
589d4002b98SHong Zhang       _mm512_mask_store_pd(&z[8*i],mask,vec_y);
590d4002b98SHong Zhang     } else {
591d4002b98SHong Zhang       _mm512_store_pd(&z[8*i],vec_y);
592d4002b98SHong Zhang     }
5937285fed1SHong Zhang   }
5947285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
5957285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
5967285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5977285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
5987285fed1SHong Zhang 
5997285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
6007285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6017285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
6027285fed1SHong Zhang         row        = 8*i + r;
6037285fed1SHong Zhang         yval       = (MatScalar)0.0;
6047285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6057285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
6067285fed1SHong Zhang         z[row] = y[row] + yval;
6077285fed1SHong Zhang       }
6087285fed1SHong Zhang       break;
6097285fed1SHong Zhang     }
6107285fed1SHong Zhang 
6117285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y+8*i);
6127285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y+8*i+4);
6137285fed1SHong Zhang 
6147285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6157285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
6167285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6177285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6187285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6197285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
6207285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6217285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6227285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
6237285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
6247285fed1SHong Zhang       aval     += 4;
6257285fed1SHong Zhang 
6267285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6277285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6287285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6297285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
6307285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6317285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6327285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
6337285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
6347285fed1SHong Zhang       aval     += 4;
6357285fed1SHong Zhang     }
6367285fed1SHong Zhang 
6377285fed1SHong Zhang     _mm256_storeu_pd(z+i*8,vec_y);
6387285fed1SHong Zhang     _mm256_storeu_pd(z+i*8+4,vec_y2);
6397285fed1SHong Zhang   }
640d4002b98SHong Zhang #else
6417285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
6427285fed1SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
643d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
644d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
645d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
646d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
647d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
648d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
649d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
650d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
651d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
652d4002b98SHong Zhang     }
6537285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6547285fed1SHong Zhang       for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j];
655d4002b98SHong Zhang     } else {
6567285fed1SHong Zhang       for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j];
6577285fed1SHong Zhang     }
658d4002b98SHong Zhang   }
659d4002b98SHong Zhang #endif
660d4002b98SHong Zhang 
661d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
662d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
663d4002b98SHong Zhang   ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
664d4002b98SHong Zhang   PetscFunctionReturn(0);
665d4002b98SHong Zhang }
666d4002b98SHong Zhang 
667d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)
668d4002b98SHong Zhang {
669d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
670d4002b98SHong Zhang   PetscScalar       *y;
671d4002b98SHong Zhang   const PetscScalar *x;
672d4002b98SHong Zhang   const MatScalar   *aval=a->val;
673d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
6747285fed1SHong Zhang   PetscInt          i,j,r,row,nnz_in_row,totalslices=a->totalslices;
675d4002b98SHong Zhang   PetscErrorCode    ierr;
676d4002b98SHong Zhang 
677d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
678d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
679d4002b98SHong Zhang #endif
680d4002b98SHong Zhang 
681d4002b98SHong Zhang   PetscFunctionBegin;
682d4002b98SHong Zhang   if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); }
683d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
684d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
685d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
6867285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
6877285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
6887285fed1SHong Zhang         row        = 8*i + r;
6897285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6907285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row];
6917285fed1SHong Zhang       }
6927285fed1SHong Zhang       break;
6937285fed1SHong Zhang     }
6947285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
6957285fed1SHong Zhang       y[acolidx[j]]   += aval[j] * x[8*i];
6967285fed1SHong Zhang       y[acolidx[j+1]] += aval[j+1] * x[8*i+1];
6977285fed1SHong Zhang       y[acolidx[j+2]] += aval[j+2] * x[8*i+2];
6987285fed1SHong Zhang       y[acolidx[j+3]] += aval[j+3] * x[8*i+3];
6997285fed1SHong Zhang       y[acolidx[j+4]] += aval[j+4] * x[8*i+4];
7007285fed1SHong Zhang       y[acolidx[j+5]] += aval[j+5] * x[8*i+5];
7017285fed1SHong Zhang       y[acolidx[j+6]] += aval[j+6] * x[8*i+6];
7027285fed1SHong Zhang       y[acolidx[j+7]] += aval[j+7] * x[8*i+7];
703d4002b98SHong Zhang     }
704d4002b98SHong Zhang   }
705d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr);
706d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
707d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
708d4002b98SHong Zhang   PetscFunctionReturn(0);
709d4002b98SHong Zhang }
710d4002b98SHong Zhang 
711d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)
712d4002b98SHong Zhang {
713d4002b98SHong Zhang   PetscErrorCode ierr;
714d4002b98SHong Zhang 
715d4002b98SHong Zhang   PetscFunctionBegin;
716d4002b98SHong Zhang   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
717d4002b98SHong Zhang   ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr);
718d4002b98SHong Zhang   PetscFunctionReturn(0);
719d4002b98SHong Zhang }
720d4002b98SHong Zhang 
721d4002b98SHong Zhang /*
722d4002b98SHong Zhang      Checks for missing diagonals
723d4002b98SHong Zhang */
724d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool  *missing,PetscInt *d)
725d4002b98SHong Zhang {
726d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
727d4002b98SHong Zhang   PetscInt    *diag,i;
728d4002b98SHong Zhang 
729d4002b98SHong Zhang   PetscFunctionBegin;
730d4002b98SHong Zhang   *missing = PETSC_FALSE;
731d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
732d4002b98SHong Zhang     *missing = PETSC_TRUE;
733d4002b98SHong Zhang     if (d) *d = 0;
734d4002b98SHong Zhang     PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");
735d4002b98SHong Zhang   } else {
736d4002b98SHong Zhang     diag = a->diag;
737d4002b98SHong Zhang     for (i=0; i<A->rmap->n; i++) {
738d4002b98SHong Zhang       if (diag[i] == -1) {
739d4002b98SHong Zhang         *missing = PETSC_TRUE;
740d4002b98SHong Zhang         if (d) *d = i;
741d4002b98SHong Zhang         PetscInfo1(A,"Matrix is missing diagonal number %D\n",i);
742d4002b98SHong Zhang         break;
743d4002b98SHong Zhang       }
744d4002b98SHong Zhang     }
745d4002b98SHong Zhang   }
746d4002b98SHong Zhang   PetscFunctionReturn(0);
747d4002b98SHong Zhang }
748d4002b98SHong Zhang 
749d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
750d4002b98SHong Zhang {
751d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
752d4002b98SHong Zhang   PetscInt       i,j,m=A->rmap->n,shift;
753d4002b98SHong Zhang   PetscErrorCode ierr;
754d4002b98SHong Zhang 
755d4002b98SHong Zhang   PetscFunctionBegin;
756d4002b98SHong Zhang   if (!a->diag) {
757d4002b98SHong Zhang     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
758d4002b98SHong Zhang     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
759d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
760d4002b98SHong Zhang   }
761d4002b98SHong Zhang   for (i=0; i<m; i++) { /* loop over rows */
762d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
763d4002b98SHong Zhang     a->diag[i] = -1;
764d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
765d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
766d4002b98SHong Zhang         a->diag[i] = shift+j*8;
767d4002b98SHong Zhang         break;
768d4002b98SHong Zhang       }
769d4002b98SHong Zhang     }
770d4002b98SHong Zhang   }
771d4002b98SHong Zhang   PetscFunctionReturn(0);
772d4002b98SHong Zhang }
773d4002b98SHong Zhang 
774d4002b98SHong Zhang /*
775d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
776d4002b98SHong Zhang */
777d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)
778d4002b98SHong Zhang {
779d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*) A->data;
780d4002b98SHong Zhang   PetscInt       i,*diag,m = A->rmap->n;
781d4002b98SHong Zhang   MatScalar      *val = a->val;
782d4002b98SHong Zhang   PetscScalar    *idiag,*mdiag;
783d4002b98SHong Zhang   PetscErrorCode ierr;
784d4002b98SHong Zhang 
785d4002b98SHong Zhang   PetscFunctionBegin;
786d4002b98SHong Zhang   if (a->idiagvalid) PetscFunctionReturn(0);
787d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
788d4002b98SHong Zhang   diag = a->diag;
789d4002b98SHong Zhang   if (!a->idiag) {
790d4002b98SHong Zhang     ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr);
791d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr);
792d4002b98SHong Zhang     val  = a->val;
793d4002b98SHong Zhang   }
794d4002b98SHong Zhang   mdiag = a->mdiag;
795d4002b98SHong Zhang   idiag = a->idiag;
796d4002b98SHong Zhang 
797d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
798d4002b98SHong Zhang     for (i=0; i<m; i++) {
799d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
800d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
801d4002b98SHong Zhang         if (PetscRealPart(fshift)) {
802d4002b98SHong Zhang           ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr);
803d4002b98SHong Zhang           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
804d4002b98SHong Zhang           A->factorerror_zeropivot_value = 0.0;
805d4002b98SHong Zhang           A->factorerror_zeropivot_row   = i;
806d4002b98SHong Zhang         } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i);
807d4002b98SHong Zhang       }
808d4002b98SHong Zhang       idiag[i] = 1.0/val[diag[i]];
809d4002b98SHong Zhang     }
810d4002b98SHong Zhang     ierr = PetscLogFlops(m);CHKERRQ(ierr);
811d4002b98SHong Zhang   } else {
812d4002b98SHong Zhang     for (i=0; i<m; i++) {
813d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
814d4002b98SHong Zhang       idiag[i] = omega/(fshift + val[diag[i]]);
815d4002b98SHong Zhang     }
816d4002b98SHong Zhang     ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr);
817d4002b98SHong Zhang   }
818d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
819d4002b98SHong Zhang   PetscFunctionReturn(0);
820d4002b98SHong Zhang }
821d4002b98SHong Zhang 
822d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
823d4002b98SHong Zhang {
824d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
825d4002b98SHong Zhang   PetscErrorCode ierr;
826d4002b98SHong Zhang 
827d4002b98SHong Zhang   PetscFunctionBegin;
828d4002b98SHong Zhang   ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr);
829d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
830d4002b98SHong Zhang   PetscFunctionReturn(0);
831d4002b98SHong Zhang }
832d4002b98SHong Zhang 
833d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A)
834d4002b98SHong Zhang {
835d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
836d4002b98SHong Zhang   PetscErrorCode ierr;
837d4002b98SHong Zhang 
838d4002b98SHong Zhang   PetscFunctionBegin;
839d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
840d4002b98SHong Zhang   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz);
841d4002b98SHong Zhang #endif
842d4002b98SHong Zhang   ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr);
843d4002b98SHong Zhang   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
844d4002b98SHong Zhang   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
845d4002b98SHong Zhang   ierr = PetscFree(a->diag);CHKERRQ(ierr);
846d4002b98SHong Zhang   ierr = PetscFree(a->ibdiag);CHKERRQ(ierr);
847d4002b98SHong Zhang   ierr = PetscFree(a->rlen);CHKERRQ(ierr);
848d4002b98SHong Zhang   ierr = PetscFree(a->sliidx);CHKERRQ(ierr);
849d4002b98SHong Zhang   ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr);
850d4002b98SHong Zhang   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
851d4002b98SHong Zhang   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
852d4002b98SHong Zhang   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
8536108893eSStefano Zampini   ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr);
854d4002b98SHong Zhang 
855d4002b98SHong Zhang   ierr = PetscFree(A->data);CHKERRQ(ierr);
856d4002b98SHong Zhang 
857d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
858d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
859d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
860d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
861d4002b98SHong Zhang #endif
862d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr);
863d4002b98SHong Zhang   PetscFunctionReturn(0);
864d4002b98SHong Zhang }
865d4002b98SHong Zhang 
866d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)
867d4002b98SHong Zhang {
868d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
869d4002b98SHong Zhang   PetscErrorCode ierr;
870d4002b98SHong Zhang 
871d4002b98SHong Zhang   PetscFunctionBegin;
872d4002b98SHong Zhang   switch (op) {
873d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
874d4002b98SHong Zhang     a->roworiented = flg;
875d4002b98SHong Zhang     break;
876d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
877d4002b98SHong Zhang     a->keepnonzeropattern = flg;
878d4002b98SHong Zhang     break;
879d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
880d4002b98SHong Zhang     a->nonew = (flg ? 0 : 1);
881d4002b98SHong Zhang     break;
882d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
883d4002b98SHong Zhang     a->nonew = (flg ? -1 : 0);
884d4002b98SHong Zhang     break;
885d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
886d4002b98SHong Zhang     a->nonew = (flg ? -2 : 0);
887d4002b98SHong Zhang     break;
888d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
889d4002b98SHong Zhang     a->nounused = (flg ? -1 : 0);
890d4002b98SHong Zhang     break;
891d4002b98SHong Zhang   case MAT_NEW_DIAGONALS:
892d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
893d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
894d4002b98SHong Zhang     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
895d4002b98SHong Zhang     break;
896d4002b98SHong Zhang   case MAT_SPD:
897d4002b98SHong Zhang   case MAT_SYMMETRIC:
898d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
899d4002b98SHong Zhang   case MAT_HERMITIAN:
900d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
901d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
902d4002b98SHong Zhang     break;
903d4002b98SHong Zhang   default:
904d4002b98SHong Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
905d4002b98SHong Zhang   }
906d4002b98SHong Zhang   PetscFunctionReturn(0);
907d4002b98SHong Zhang }
908d4002b98SHong Zhang 
909d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v)
910d4002b98SHong Zhang {
911d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
912d4002b98SHong Zhang   PetscInt       i,j,n,shift;
913d4002b98SHong Zhang   PetscScalar    *x,zero=0.0;
914d4002b98SHong Zhang   PetscErrorCode ierr;
915d4002b98SHong Zhang 
916d4002b98SHong Zhang   PetscFunctionBegin;
917d4002b98SHong Zhang   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
918d4002b98SHong Zhang   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
919d4002b98SHong Zhang 
920d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
921d4002b98SHong Zhang     PetscInt *diag=a->diag;
922d4002b98SHong Zhang     ierr = VecGetArray(v,&x);CHKERRQ(ierr);
923d4002b98SHong Zhang     for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]];
924d4002b98SHong Zhang     ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
925d4002b98SHong Zhang     PetscFunctionReturn(0);
926d4002b98SHong Zhang   }
927d4002b98SHong Zhang 
928d4002b98SHong Zhang   ierr = VecSet(v,zero);CHKERRQ(ierr);
929d4002b98SHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
930d4002b98SHong Zhang   for (i=0; i<n; i++) { /* loop over rows */
931d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
932d4002b98SHong Zhang     x[i] = 0;
933d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
934d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
935d4002b98SHong Zhang         x[i] = a->val[shift+j*8];
936d4002b98SHong Zhang         break;
937d4002b98SHong Zhang       }
938d4002b98SHong Zhang     }
939d4002b98SHong Zhang   }
940d4002b98SHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
941d4002b98SHong Zhang   PetscFunctionReturn(0);
942d4002b98SHong Zhang }
943d4002b98SHong Zhang 
944d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)
945d4002b98SHong Zhang {
946d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
947d4002b98SHong Zhang   const PetscScalar *l,*r;
948d4002b98SHong Zhang   PetscInt          i,j,m,n,row;
949d4002b98SHong Zhang   PetscErrorCode    ierr;
950d4002b98SHong Zhang 
951d4002b98SHong Zhang   PetscFunctionBegin;
952d4002b98SHong Zhang   if (ll) {
953d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
954d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
955d4002b98SHong Zhang     ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr);
956d4002b98SHong Zhang     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length");
957d4002b98SHong Zhang     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
958d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
959d4002b98SHong Zhang       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
960d4002b98SHong Zhang         a->val[j] *= l[8*i+row];
961d4002b98SHong Zhang       }
962d4002b98SHong Zhang     }
963d4002b98SHong Zhang     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
964d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
965d4002b98SHong Zhang   }
966d4002b98SHong Zhang   if (rr) {
967d4002b98SHong Zhang     ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr);
968d4002b98SHong Zhang     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length");
969d4002b98SHong Zhang     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
970d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
971d4002b98SHong Zhang       for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) {
972d4002b98SHong Zhang         a->val[j] *= r[a->colidx[j]];
973d4002b98SHong Zhang       }
974d4002b98SHong Zhang     }
975d4002b98SHong Zhang     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
976d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
977d4002b98SHong Zhang   }
978d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
979d4002b98SHong Zhang   PetscFunctionReturn(0);
980d4002b98SHong Zhang }
981d4002b98SHong Zhang 
982d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
983d4002b98SHong Zhang 
984d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
985d4002b98SHong Zhang {
986d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
987d4002b98SHong Zhang   PetscInt    *cp,i,k,low,high,t,row,col,l;
988d4002b98SHong Zhang   PetscInt    shift;
989d4002b98SHong Zhang   MatScalar   *vp;
990d4002b98SHong Zhang 
991d4002b98SHong Zhang   PetscFunctionBegin;
992*68aafef3SStefano Zampini   for (k=0; k<m; k++) { /* loop over requested rows */
993d4002b98SHong Zhang     row = im[k];
994d4002b98SHong Zhang     if (row<0) continue;
995d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
996d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
997d4002b98SHong Zhang #endif
998d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
999d4002b98SHong Zhang     cp = a->colidx+shift; /* pointer to the row */
1000d4002b98SHong Zhang     vp = a->val+shift; /* pointer to the row */
1001*68aafef3SStefano Zampini     for (l=0; l<n; l++) { /* loop over requested columns */
1002d4002b98SHong Zhang       col = in[l];
1003d4002b98SHong Zhang       if (col<0) continue;
1004d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1005d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1);
1006d4002b98SHong Zhang #endif
1007d4002b98SHong Zhang       high = a->rlen[row]; low = 0; /* assume unsorted */
1008d4002b98SHong Zhang       while (high-low > 5) {
1009d4002b98SHong Zhang         t = (low+high)/2;
1010d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1011d4002b98SHong Zhang         else low = t;
1012d4002b98SHong Zhang       }
1013d4002b98SHong Zhang       for (i=low; i<high; i++) {
1014d4002b98SHong Zhang         if (*(cp+8*i) > col) break;
1015d4002b98SHong Zhang         if (*(cp+8*i) == col) {
1016d4002b98SHong Zhang           *v++ = *(vp+8*i);
1017d4002b98SHong Zhang           goto finished;
1018d4002b98SHong Zhang         }
1019d4002b98SHong Zhang       }
1020d4002b98SHong Zhang       *v++ = 0.0;
1021d4002b98SHong Zhang     finished:;
1022d4002b98SHong Zhang     }
1023d4002b98SHong Zhang   }
1024d4002b98SHong Zhang   PetscFunctionReturn(0);
1025d4002b98SHong Zhang }
1026d4002b98SHong Zhang 
1027d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)
1028d4002b98SHong Zhang {
1029d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1030d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1031d4002b98SHong Zhang   const char        *name;
1032d4002b98SHong Zhang   PetscViewerFormat format;
1033d4002b98SHong Zhang   PetscErrorCode    ierr;
1034d4002b98SHong Zhang 
1035d4002b98SHong Zhang   PetscFunctionBegin;
1036d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1037d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1038d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1039d4002b98SHong Zhang     /*
1040d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
1041d4002b98SHong Zhang       nofinalvalue = 1;
1042d4002b98SHong Zhang     }
1043d4002b98SHong Zhang     */
1044d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1045d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr);
1046d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr);
1047d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1048d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
1049d4002b98SHong Zhang #else
1050d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
1051d4002b98SHong Zhang #endif
1052d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr);
1053d4002b98SHong Zhang 
1054d4002b98SHong Zhang     for (i=0; i<m; i++) {
1055d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1056d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1057d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1058d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1059d4002b98SHong Zhang #else
1060d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1061d4002b98SHong Zhang #endif
1062d4002b98SHong Zhang       }
1063d4002b98SHong Zhang     }
1064d4002b98SHong Zhang     /*
1065d4002b98SHong Zhang     if (nofinalvalue) {
1066d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1067d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr);
1068d4002b98SHong Zhang #else
1069d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr);
1070d4002b98SHong Zhang #endif
1071d4002b98SHong Zhang     }
1072d4002b98SHong Zhang     */
1073d4002b98SHong Zhang     ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1074d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr);
1075d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1076d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
1077d4002b98SHong Zhang     PetscFunctionReturn(0);
1078d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1079d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1080d4002b98SHong Zhang     for (i=0; i<m; i++) {
1081d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1082d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1083d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1084d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1085d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1086d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1087d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1088d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1089d4002b98SHong Zhang         } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) {
1090d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1091d4002b98SHong Zhang         }
1092d4002b98SHong Zhang #else
1093d4002b98SHong Zhang         if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);}
1094d4002b98SHong Zhang #endif
1095d4002b98SHong Zhang       }
1096d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1097d4002b98SHong Zhang     }
1098d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1099d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1100d4002b98SHong Zhang     PetscInt    cnt=0,jcnt;
1101d4002b98SHong Zhang     PetscScalar value;
1102d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1103d4002b98SHong Zhang     PetscBool   realonly=PETSC_TRUE;
1104d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1105d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1106d4002b98SHong Zhang         realonly = PETSC_FALSE;
1107d4002b98SHong Zhang         break;
1108d4002b98SHong Zhang       }
1109d4002b98SHong Zhang     }
1110d4002b98SHong Zhang #endif
1111d4002b98SHong Zhang 
1112d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1113d4002b98SHong Zhang     for (i=0; i<m; i++) {
1114d4002b98SHong Zhang       jcnt = 0;
1115d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1116d4002b98SHong Zhang       for (j=0; j<A->cmap->n; j++) {
1117d4002b98SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) {
1118d4002b98SHong Zhang           value = a->val[cnt++];
1119d4002b98SHong Zhang           jcnt++;
1120d4002b98SHong Zhang         } else {
1121d4002b98SHong Zhang           value = 0.0;
1122d4002b98SHong Zhang         }
1123d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1124d4002b98SHong Zhang         if (realonly) {
1125d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr);
1126d4002b98SHong Zhang         } else {
1127d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr);
1128d4002b98SHong Zhang         }
1129d4002b98SHong Zhang #else
1130d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr);
1131d4002b98SHong Zhang #endif
1132d4002b98SHong Zhang       }
1133d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1134d4002b98SHong Zhang     }
1135d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1136d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1137d4002b98SHong Zhang     PetscInt fshift=1;
1138d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1139d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1140d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr);
1141d4002b98SHong Zhang #else
1142d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr);
1143d4002b98SHong Zhang #endif
1144d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr);
1145d4002b98SHong Zhang     for (i=0; i<m; i++) {
1146d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1147d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1148d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1149d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1150d4002b98SHong Zhang #else
1151d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1152d4002b98SHong Zhang #endif
1153d4002b98SHong Zhang       }
1154d4002b98SHong Zhang     }
1155d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1156*68aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
1157*68aafef3SStefano Zampini     for (i=0; i<a->totalslices; i++) { /* loop over slices */
1158*68aafef3SStefano Zampini       PetscInt row;
1159*68aafef3SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"slice %D: %D %D\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr);
1160*68aafef3SStefano Zampini       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
1161*68aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1162*68aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
1163*68aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1164*68aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1165*68aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1166*68aafef3SStefano Zampini         } else {
1167*68aafef3SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1168*68aafef3SStefano Zampini         }
1169*68aafef3SStefano Zampini #else
1170*68aafef3SStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,"  %D %D %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1171*68aafef3SStefano Zampini #endif
1172*68aafef3SStefano Zampini       }
1173*68aafef3SStefano Zampini     }
1174d4002b98SHong Zhang   } else {
1175d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1176d4002b98SHong Zhang     if (A->factortype) {
1177d4002b98SHong Zhang       for (i=0; i<m; i++) {
1178d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1179d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1180d4002b98SHong Zhang         /* L part */
1181d4002b98SHong Zhang         for (j=shift; j<a->diag[i]; j+=8) {
1182d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1183d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) {
1184d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1185d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) {
1186d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1187d4002b98SHong Zhang           } else {
1188d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1189d4002b98SHong Zhang           }
1190d4002b98SHong Zhang #else
1191d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1192d4002b98SHong Zhang #endif
1193d4002b98SHong Zhang         }
1194d4002b98SHong Zhang         /* diagonal */
1195d4002b98SHong Zhang         j = a->diag[i];
1196d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1197d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
1198d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr);
1199d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1200d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr);
1201d4002b98SHong Zhang         } else {
1202d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr);
1203d4002b98SHong Zhang         }
1204d4002b98SHong Zhang #else
1205d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr);
1206d4002b98SHong Zhang #endif
1207d4002b98SHong Zhang 
1208d4002b98SHong Zhang         /* U part */
1209d4002b98SHong Zhang         for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) {
1210d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1211d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1212d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1213d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1214d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1215d4002b98SHong Zhang           } else {
1216d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1217d4002b98SHong Zhang           }
1218d4002b98SHong Zhang #else
1219d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1220d4002b98SHong Zhang #endif
1221d4002b98SHong Zhang         }
1222d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1223d4002b98SHong Zhang       }
1224d4002b98SHong Zhang     } else {
1225d4002b98SHong Zhang       for (i=0; i<m; i++) {
1226d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1227d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1228d4002b98SHong Zhang         for (j=0; j<a->rlen[i]; j++) {
1229d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1230d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1231d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1232d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1233d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1234d4002b98SHong Zhang           } else {
1235d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1236d4002b98SHong Zhang           }
1237d4002b98SHong Zhang #else
1238d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);
1239d4002b98SHong Zhang #endif
1240d4002b98SHong Zhang         }
1241d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1242d4002b98SHong Zhang       }
1243d4002b98SHong Zhang     }
1244d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1245d4002b98SHong Zhang   }
1246d4002b98SHong Zhang   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
1247d4002b98SHong Zhang   PetscFunctionReturn(0);
1248d4002b98SHong Zhang }
1249d4002b98SHong Zhang 
1250d4002b98SHong Zhang #include <petscdraw.h>
1251d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa)
1252d4002b98SHong Zhang {
1253d4002b98SHong Zhang   Mat               A=(Mat)Aa;
1254d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1255d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1256d4002b98SHong Zhang   int               color;
1257d4002b98SHong Zhang   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1258d4002b98SHong Zhang   PetscViewer       viewer;
1259d4002b98SHong Zhang   PetscViewerFormat format;
1260d4002b98SHong Zhang   PetscErrorCode    ierr;
1261d4002b98SHong Zhang 
1262d4002b98SHong Zhang   PetscFunctionBegin;
1263d4002b98SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1264d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1265d4002b98SHong Zhang   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1266d4002b98SHong Zhang 
1267d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1268d4002b98SHong Zhang 
1269d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1270d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1271d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1272d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1273d4002b98SHong Zhang     for (i=0; i<m; i++) {
1274d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1275d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1276d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1277d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1278d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) >=  0.) continue;
1279d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1280d4002b98SHong Zhang       }
1281d4002b98SHong Zhang     }
1282d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1283d4002b98SHong Zhang     for (i=0; i<m; i++) {
1284d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1285d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1286d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1287d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1288d4002b98SHong Zhang         if (a->val[shift+8*j] !=  0.) continue;
1289d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1290d4002b98SHong Zhang       }
1291d4002b98SHong Zhang     }
1292d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1293d4002b98SHong Zhang     for (i=0; i<m; i++) {
1294d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1295d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1296d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1297d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1298d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) <=  0.) continue;
1299d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1300d4002b98SHong Zhang       }
1301d4002b98SHong Zhang     }
1302d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1303d4002b98SHong Zhang   } else {
1304d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1305d4002b98SHong Zhang     /* first determine max of all nonzero values */
1306d4002b98SHong Zhang     PetscReal minv=0.0,maxv=0.0;
1307d4002b98SHong Zhang     PetscInt  count=0;
1308d4002b98SHong Zhang     PetscDraw popup;
1309d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1310d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1311d4002b98SHong Zhang     }
1312d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1313d4002b98SHong Zhang     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
1314d4002b98SHong Zhang     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1315d4002b98SHong Zhang 
1316d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1317d4002b98SHong Zhang     for (i=0; i<m; i++) {
1318d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1319d4002b98SHong Zhang       y_l = m - i - 1.0;
1320d4002b98SHong Zhang       y_r = y_l + 1.0;
1321d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1322d4002b98SHong Zhang         x_l = a->colidx[shift+j*8];
1323d4002b98SHong Zhang         x_r = x_l + 1.0;
1324d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv);
1325d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1326d4002b98SHong Zhang         count++;
1327d4002b98SHong Zhang       }
1328d4002b98SHong Zhang     }
1329d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1330d4002b98SHong Zhang   }
1331d4002b98SHong Zhang   PetscFunctionReturn(0);
1332d4002b98SHong Zhang }
1333d4002b98SHong Zhang 
1334d4002b98SHong Zhang #include <petscdraw.h>
1335d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)
1336d4002b98SHong Zhang {
1337d4002b98SHong Zhang   PetscDraw      draw;
1338d4002b98SHong Zhang   PetscReal      xr,yr,xl,yl,h,w;
1339d4002b98SHong Zhang   PetscBool      isnull;
1340d4002b98SHong Zhang   PetscErrorCode ierr;
1341d4002b98SHong Zhang 
1342d4002b98SHong Zhang   PetscFunctionBegin;
1343d4002b98SHong Zhang   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1344d4002b98SHong Zhang   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1345d4002b98SHong Zhang   if (isnull) PetscFunctionReturn(0);
1346d4002b98SHong Zhang 
1347d4002b98SHong Zhang   xr   = A->cmap->n; yr  = A->rmap->n; h = yr/10.0; w = xr/10.0;
1348d4002b98SHong Zhang   xr  += w;          yr += h;         xl = -w;     yl = -h;
1349d4002b98SHong Zhang   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1350d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1351d4002b98SHong Zhang   ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr);
1352d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1353d4002b98SHong Zhang   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1354d4002b98SHong Zhang   PetscFunctionReturn(0);
1355d4002b98SHong Zhang }
1356d4002b98SHong Zhang 
1357d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer)
1358d4002b98SHong Zhang {
1359d4002b98SHong Zhang   PetscBool      iascii,isbinary,isdraw;
1360d4002b98SHong Zhang   PetscErrorCode ierr;
1361d4002b98SHong Zhang 
1362d4002b98SHong Zhang   PetscFunctionBegin;
1363d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1364d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1365d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1366d4002b98SHong Zhang   if (iascii) {
1367d4002b98SHong Zhang     ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr);
1368d4002b98SHong Zhang   } else if (isbinary) {
1369d4002b98SHong Zhang     /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */
1370d4002b98SHong Zhang   } else if (isdraw) {
1371d4002b98SHong Zhang     ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr);
1372d4002b98SHong Zhang   }
1373d4002b98SHong Zhang   PetscFunctionReturn(0);
1374d4002b98SHong Zhang }
1375d4002b98SHong Zhang 
1376d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)
1377d4002b98SHong Zhang {
1378d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1379d4002b98SHong Zhang   PetscInt       i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k;
1380d4002b98SHong Zhang   MatScalar      *vp;
1381d4002b98SHong Zhang   PetscErrorCode ierr;
1382d4002b98SHong Zhang 
1383d4002b98SHong Zhang   PetscFunctionBegin;
1384d4002b98SHong Zhang   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1385d4002b98SHong Zhang   /* To do: compress out the unused elements */
1386d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
1387d4002b98SHong Zhang   ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr);
1388d4002b98SHong Zhang   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr);
1389d4002b98SHong Zhang   ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr);
1390d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1391d4002b98SHong Zhang   for (i=0; i<a->totalslices; ++i) {
1392d4002b98SHong Zhang     shift = a->sliidx[i];    /* starting index of the slice */
1393d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the column indices of the slice */
1394d4002b98SHong Zhang     vp    = a->val+shift;    /* pointer to the nonzero values of the slice */
1395d4002b98SHong Zhang     for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */
1396d4002b98SHong Zhang       row  = 8*i + row_in_slice;
1397d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1398d4002b98SHong Zhang       /*
1399d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1400d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1401d4002b98SHong Zhang       */
1402d4002b98SHong Zhang       lastcol = 0;
1403d4002b98SHong Zhang       if (nrow>0) { /* nonempty row */
1404d4002b98SHong Zhang         lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */
1405d4002b98SHong Zhang       } else if (!row_in_slice) { /* first row of the currect slice is empty */
1406d4002b98SHong Zhang         for (j=1;j<8;j++) {
1407d4002b98SHong Zhang           if (a->rlen[8*i+j]) {
1408d4002b98SHong Zhang             lastcol = cp[j];
1409d4002b98SHong Zhang             break;
1410d4002b98SHong Zhang           }
1411d4002b98SHong Zhang         }
1412d4002b98SHong Zhang       } else {
1413d4002b98SHong Zhang         if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */
1414d4002b98SHong Zhang       }
1415d4002b98SHong Zhang 
1416d4002b98SHong Zhang       for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) {
1417d4002b98SHong Zhang         cp[8*k+row_in_slice] = lastcol;
1418d4002b98SHong Zhang         vp[8*k+row_in_slice] = (MatScalar)0;
1419d4002b98SHong Zhang       }
1420d4002b98SHong Zhang     }
1421d4002b98SHong Zhang   }
1422d4002b98SHong Zhang 
1423d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1424d4002b98SHong Zhang   a->reallocs      = 0;
1425d4002b98SHong Zhang 
1426d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1427d4002b98SHong Zhang   PetscFunctionReturn(0);
1428d4002b98SHong Zhang }
1429d4002b98SHong Zhang 
1430d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info)
1431d4002b98SHong Zhang {
1432d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1433d4002b98SHong Zhang 
1434d4002b98SHong Zhang   PetscFunctionBegin;
1435d4002b98SHong Zhang   info->block_size   = 1.0;
1436d4002b98SHong Zhang   info->nz_allocated = (double)a->maxallocmat;
1437d4002b98SHong Zhang   info->nz_used      = (double)a->sliidx[a->totalslices]; /* include padding zeros */
1438d4002b98SHong Zhang   info->nz_unneeded  = (double)(a->maxallocmat-a->sliidx[a->totalslices]);
1439d4002b98SHong Zhang   info->assemblies   = (double)A->num_ass;
1440d4002b98SHong Zhang   info->mallocs      = (double)A->info.mallocs;
1441d4002b98SHong Zhang   info->memory       = ((PetscObject)A)->mem;
1442d4002b98SHong Zhang   if (A->factortype) {
1443d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1444d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1445d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1446d4002b98SHong Zhang   } else {
1447d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1448d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1449d4002b98SHong Zhang     info->factor_mallocs    = 0;
1450d4002b98SHong Zhang   }
1451d4002b98SHong Zhang   PetscFunctionReturn(0);
1452d4002b98SHong Zhang }
1453d4002b98SHong Zhang 
1454d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
1455d4002b98SHong Zhang {
1456d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1457d4002b98SHong Zhang   PetscInt       shift,i,k,l,low,high,t,ii,row,col,nrow;
1458d4002b98SHong Zhang   PetscInt       *cp,nonew=a->nonew,lastcol=-1;
1459d4002b98SHong Zhang   MatScalar      *vp,value;
1460d4002b98SHong Zhang   PetscErrorCode ierr;
1461d4002b98SHong Zhang 
1462d4002b98SHong Zhang   PetscFunctionBegin;
1463d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
1464d4002b98SHong Zhang     row = im[k];
1465d4002b98SHong Zhang     if (row < 0) continue;
1466d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1467d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1468d4002b98SHong Zhang #endif
1469d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1470d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the row */
1471d4002b98SHong Zhang     vp    = a->val+shift; /* pointer to the row */
1472d4002b98SHong Zhang     nrow  = a->rlen[row];
1473d4002b98SHong Zhang     low   = 0;
1474d4002b98SHong Zhang     high  = nrow;
1475d4002b98SHong Zhang 
1476d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
1477d4002b98SHong Zhang       col = in[l];
1478d4002b98SHong Zhang       if (col<0) continue;
1479d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1480d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1);
1481d4002b98SHong Zhang #endif
1482d4002b98SHong Zhang       if (a->roworiented) {
1483d4002b98SHong Zhang         value = v[l+k*n];
1484d4002b98SHong Zhang       } else {
1485d4002b98SHong Zhang         value = v[k+l*m];
1486d4002b98SHong Zhang       }
1487d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1488d4002b98SHong Zhang 
1489d4002b98SHong Zhang       /* search in this row for the specified colmun, i indicates the column to be set */
1490d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1491d4002b98SHong Zhang       else high = nrow;
1492d4002b98SHong Zhang       lastcol = col;
1493d4002b98SHong Zhang       while (high-low > 5) {
1494d4002b98SHong Zhang         t = (low+high)/2;
1495d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1496d4002b98SHong Zhang         else low = t;
1497d4002b98SHong Zhang       }
1498d4002b98SHong Zhang       for (i=low; i<high; i++) {
1499d4002b98SHong Zhang         if (*(cp+i*8) > col) break;
1500d4002b98SHong Zhang         if (*(cp+i*8) == col) {
1501d4002b98SHong Zhang           if (is == ADD_VALUES) *(vp+i*8) += value;
1502d4002b98SHong Zhang           else *(vp+i*8) = value;
1503d4002b98SHong Zhang           low = i + 1;
1504d4002b98SHong Zhang           goto noinsert;
1505d4002b98SHong Zhang         }
1506d4002b98SHong Zhang       }
1507d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1508d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
1509d4002b98SHong Zhang       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1510d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
1511d4002b98SHong Zhang       MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar);
1512d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1513d4002b98SHong Zhang       for (ii=nrow-1; ii>=i; ii--) {
1514d4002b98SHong Zhang         *(cp+(ii+1)*8) = *(cp+ii*8);
1515d4002b98SHong Zhang         *(vp+(ii+1)*8) = *(vp+ii*8);
1516d4002b98SHong Zhang       }
1517d4002b98SHong Zhang       a->rlen[row]++;
1518d4002b98SHong Zhang       *(cp+i*8) = col;
1519d4002b98SHong Zhang       *(vp+i*8) = value;
1520d4002b98SHong Zhang       a->nz++;
1521d4002b98SHong Zhang       A->nonzerostate++;
1522d4002b98SHong Zhang       low = i+1; high++; nrow++;
1523d4002b98SHong Zhang noinsert:;
1524d4002b98SHong Zhang     }
1525d4002b98SHong Zhang     a->rlen[row] = nrow;
1526d4002b98SHong Zhang   }
1527d4002b98SHong Zhang   PetscFunctionReturn(0);
1528d4002b98SHong Zhang }
1529d4002b98SHong Zhang 
1530d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)
1531d4002b98SHong Zhang {
1532d4002b98SHong Zhang   PetscErrorCode ierr;
1533d4002b98SHong Zhang 
1534d4002b98SHong Zhang   PetscFunctionBegin;
1535d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1536d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1537d4002b98SHong Zhang     Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1538d4002b98SHong Zhang     Mat_SeqSELL *b=(Mat_SeqSELL*)B->data;
1539d4002b98SHong Zhang 
1540d4002b98SHong Zhang     if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
1541d4002b98SHong Zhang     ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1542d4002b98SHong Zhang   } else {
1543d4002b98SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1544d4002b98SHong Zhang   }
1545d4002b98SHong Zhang   PetscFunctionReturn(0);
1546d4002b98SHong Zhang }
1547d4002b98SHong Zhang 
1548d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A)
1549d4002b98SHong Zhang {
1550d4002b98SHong Zhang   PetscErrorCode ierr;
1551d4002b98SHong Zhang 
1552d4002b98SHong Zhang   PetscFunctionBegin;
1553d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr);
1554d4002b98SHong Zhang   PetscFunctionReturn(0);
1555d4002b98SHong Zhang }
1556d4002b98SHong Zhang 
1557d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[])
1558d4002b98SHong Zhang {
1559d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1560d4002b98SHong Zhang 
1561d4002b98SHong Zhang   PetscFunctionBegin;
1562d4002b98SHong Zhang   *array = a->val;
1563d4002b98SHong Zhang   PetscFunctionReturn(0);
1564d4002b98SHong Zhang }
1565d4002b98SHong Zhang 
1566d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[])
1567d4002b98SHong Zhang {
1568d4002b98SHong Zhang   PetscFunctionBegin;
1569d4002b98SHong Zhang   PetscFunctionReturn(0);
1570d4002b98SHong Zhang }
1571d4002b98SHong Zhang 
1572d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A)
1573d4002b98SHong Zhang {
1574d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1575d4002b98SHong Zhang   PetscInt    i;
1576d4002b98SHong Zhang   MatScalar   *aval=a->val;
1577d4002b98SHong Zhang 
1578d4002b98SHong Zhang   PetscFunctionBegin;
1579d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]);
1580d4002b98SHong Zhang   PetscFunctionReturn(0);
1581d4002b98SHong Zhang }
1582d4002b98SHong Zhang 
1583d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1584d4002b98SHong Zhang {
1585d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1586d4002b98SHong Zhang   PetscInt       i;
1587d4002b98SHong Zhang   MatScalar      *aval=a->val;
1588d4002b98SHong Zhang   PetscErrorCode ierr;
1589d4002b98SHong Zhang 
1590d4002b98SHong Zhang   PetscFunctionBegin;
1591d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
1592d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1593d4002b98SHong Zhang   PetscFunctionReturn(0);
1594d4002b98SHong Zhang }
1595d4002b98SHong Zhang 
1596d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha)
1597d4002b98SHong Zhang {
1598d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)inA->data;
1599d4002b98SHong Zhang   MatScalar      *aval=a->val;
1600d4002b98SHong Zhang   PetscScalar    oalpha=alpha;
1601d4002b98SHong Zhang   PetscBLASInt   one=1,size;
1602d4002b98SHong Zhang   PetscErrorCode ierr;
1603d4002b98SHong Zhang 
1604d4002b98SHong Zhang   PetscFunctionBegin;
1605d4002b98SHong Zhang   ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr);
1606d4002b98SHong Zhang   PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one));
1607d4002b98SHong Zhang   ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1608d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr);
1609d4002b98SHong Zhang   PetscFunctionReturn(0);
1610d4002b98SHong Zhang }
1611d4002b98SHong Zhang 
1612d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a)
1613d4002b98SHong Zhang {
1614d4002b98SHong Zhang   Mat_SeqSELL    *y=(Mat_SeqSELL*)Y->data;
1615d4002b98SHong Zhang   PetscErrorCode ierr;
1616d4002b98SHong Zhang 
1617d4002b98SHong Zhang   PetscFunctionBegin;
1618d4002b98SHong Zhang   if (!Y->preallocated || !y->nz) {
1619d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr);
1620d4002b98SHong Zhang   }
1621d4002b98SHong Zhang   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
1622d4002b98SHong Zhang   PetscFunctionReturn(0);
1623d4002b98SHong Zhang }
1624d4002b98SHong Zhang 
1625d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1626d4002b98SHong Zhang {
1627d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1628d4002b98SHong Zhang   PetscScalar       *x,sum,*t;
1629d4002b98SHong Zhang   const MatScalar   *idiag=0,*mdiag;
1630d4002b98SHong Zhang   const PetscScalar *b,*xb;
1631d4002b98SHong Zhang   PetscInt          n,m=A->rmap->n,i,j,shift;
1632d4002b98SHong Zhang   const PetscInt    *diag;
1633d4002b98SHong Zhang   PetscErrorCode    ierr;
1634d4002b98SHong Zhang 
1635d4002b98SHong Zhang   PetscFunctionBegin;
1636d4002b98SHong Zhang   its = its*lits;
1637d4002b98SHong Zhang 
1638d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
1639d4002b98SHong Zhang   if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);}
1640d4002b98SHong Zhang   a->fshift = fshift;
1641d4002b98SHong Zhang   a->omega  = omega;
1642d4002b98SHong Zhang 
1643d4002b98SHong Zhang   diag  = a->diag;
1644d4002b98SHong Zhang   t     = a->ssor_work;
1645d4002b98SHong Zhang   idiag = a->idiag;
1646d4002b98SHong Zhang   mdiag = a->mdiag;
1647d4002b98SHong Zhang 
1648d4002b98SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1649d4002b98SHong Zhang   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1650d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
1651d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented");
1652d4002b98SHong Zhang   if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented");
1653d4002b98SHong Zhang   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
1654d4002b98SHong Zhang 
1655d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1656d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1657d4002b98SHong Zhang       for (i=0; i<m; i++) {
1658d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1659d4002b98SHong Zhang         sum   = b[i];
1660d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1661d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1662d4002b98SHong Zhang         t[i]  = sum;
1663d4002b98SHong Zhang         x[i]  = sum*idiag[i];
1664d4002b98SHong Zhang       }
1665d4002b98SHong Zhang       xb   = t;
1666d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1667d4002b98SHong Zhang     } else xb = b;
1668d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1669d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1670d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1671d4002b98SHong Zhang         sum   = xb[i];
1672d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1673d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1674d4002b98SHong Zhang         if (xb == b) {
1675d4002b98SHong Zhang           x[i] = sum*idiag[i];
1676d4002b98SHong Zhang         } else {
1677d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1678d4002b98SHong Zhang         }
1679d4002b98SHong Zhang       }
1680d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1681d4002b98SHong Zhang     }
1682d4002b98SHong Zhang     its--;
1683d4002b98SHong Zhang   }
1684d4002b98SHong Zhang   while (its--) {
1685d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1686d4002b98SHong Zhang       for (i=0; i<m; i++) {
1687d4002b98SHong Zhang         /* lower */
1688d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1689d4002b98SHong Zhang         sum   = b[i];
1690d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1691d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1692d4002b98SHong Zhang         t[i]  = sum;             /* save application of the lower-triangular part */
1693d4002b98SHong Zhang         /* upper */
1694d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1695d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1696d4002b98SHong Zhang         x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1697d4002b98SHong Zhang       }
1698d4002b98SHong Zhang       xb   = t;
1699d4002b98SHong Zhang       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1700d4002b98SHong Zhang     } else xb = b;
1701d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1702d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1703d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1704d4002b98SHong Zhang         sum = xb[i];
1705d4002b98SHong Zhang         if (xb == b) {
1706d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1707d4002b98SHong Zhang           n     = a->rlen[i];
1708d4002b98SHong Zhang           for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1709d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i];
1710d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
1711d4002b98SHong Zhang           n     = a->rlen[i]-(diag[i]-shift)/8-1;
1712d4002b98SHong Zhang           for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1713d4002b98SHong Zhang           x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1714d4002b98SHong Zhang         }
1715d4002b98SHong Zhang       }
1716d4002b98SHong Zhang       if (xb == b) {
1717d4002b98SHong Zhang         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1718d4002b98SHong Zhang       } else {
1719d4002b98SHong Zhang         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1720d4002b98SHong Zhang       }
1721d4002b98SHong Zhang     }
1722d4002b98SHong Zhang   }
1723d4002b98SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1724d4002b98SHong Zhang   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1725d4002b98SHong Zhang   PetscFunctionReturn(0);
1726d4002b98SHong Zhang }
1727d4002b98SHong Zhang 
1728d4002b98SHong Zhang /* -------------------------------------------------------------------*/
1729d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17306108893eSStefano Zampini                                        MatGetRow_SeqSELL,
17316108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1732d4002b98SHong Zhang                                        MatMult_SeqSELL,
1733d4002b98SHong Zhang                                /* 4*/  MatMultAdd_SeqSELL,
1734d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1735d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1736d4002b98SHong Zhang                                        0,
1737d4002b98SHong Zhang                                        0,
1738d4002b98SHong Zhang                                        0,
1739d4002b98SHong Zhang                                /* 10*/ 0,
1740d4002b98SHong Zhang                                        0,
1741d4002b98SHong Zhang                                        0,
1742d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1743d4002b98SHong Zhang                                        0,
1744d4002b98SHong Zhang                                /* 15*/ MatGetInfo_SeqSELL,
1745d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1746d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1747d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1748d4002b98SHong Zhang                                        0,
1749d4002b98SHong Zhang                                /* 20*/ 0,
1750d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1751d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1752d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1753d4002b98SHong Zhang                                /* 24*/ 0,
1754d4002b98SHong Zhang                                        0,
1755d4002b98SHong Zhang                                        0,
1756d4002b98SHong Zhang                                        0,
1757d4002b98SHong Zhang                                        0,
1758d4002b98SHong Zhang                                /* 29*/ MatSetUp_SeqSELL,
1759d4002b98SHong Zhang                                        0,
1760d4002b98SHong Zhang                                        0,
1761d4002b98SHong Zhang                                        0,
1762d4002b98SHong Zhang                                        0,
1763d4002b98SHong Zhang                                /* 34*/ MatDuplicate_SeqSELL,
1764d4002b98SHong Zhang                                        0,
1765d4002b98SHong Zhang                                        0,
1766d4002b98SHong Zhang                                        0,
1767d4002b98SHong Zhang                                        0,
1768d4002b98SHong Zhang                                /* 39*/ 0,
1769d4002b98SHong Zhang                                        0,
1770d4002b98SHong Zhang                                        0,
1771d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1772d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1773d4002b98SHong Zhang                                /* 44*/ 0,
1774d4002b98SHong Zhang                                        MatScale_SeqSELL,
1775d4002b98SHong Zhang                                        MatShift_SeqSELL,
1776d4002b98SHong Zhang                                        0,
1777d4002b98SHong Zhang                                        0,
1778d4002b98SHong Zhang                                /* 49*/ 0,
1779d4002b98SHong Zhang                                        0,
1780d4002b98SHong Zhang                                        0,
1781d4002b98SHong Zhang                                        0,
1782d4002b98SHong Zhang                                        0,
1783d4002b98SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
1784d4002b98SHong Zhang                                        0,
1785d4002b98SHong Zhang                                        0,
1786d4002b98SHong Zhang                                        0,
1787d4002b98SHong Zhang                                        0,
1788d4002b98SHong Zhang                                /* 59*/ 0,
1789d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1790d4002b98SHong Zhang                                        MatView_SeqSELL,
1791d4002b98SHong Zhang                                        0,
1792d4002b98SHong Zhang                                        0,
1793d4002b98SHong Zhang                                /* 64*/ 0,
1794d4002b98SHong Zhang                                        0,
1795d4002b98SHong Zhang                                        0,
1796d4002b98SHong Zhang                                        0,
1797d4002b98SHong Zhang                                        0,
1798d4002b98SHong Zhang                                /* 69*/ 0,
1799d4002b98SHong Zhang                                        0,
1800d4002b98SHong Zhang                                        0,
1801d4002b98SHong Zhang                                        0,
1802d4002b98SHong Zhang                                        0,
1803d4002b98SHong Zhang                                /* 74*/ 0,
1804d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1805d4002b98SHong Zhang                                        0,
1806d4002b98SHong Zhang                                        0,
1807d4002b98SHong Zhang                                        0,
1808d4002b98SHong Zhang                                /* 79*/ 0,
1809d4002b98SHong Zhang                                        0,
1810d4002b98SHong Zhang                                        0,
1811d4002b98SHong Zhang                                        0,
1812d4002b98SHong Zhang                                        0,
1813d4002b98SHong Zhang                                /* 84*/ 0,
1814d4002b98SHong Zhang                                        0,
1815d4002b98SHong Zhang                                        0,
1816d4002b98SHong Zhang                                        0,
1817d4002b98SHong Zhang                                        0,
1818d4002b98SHong Zhang                                /* 89*/ 0,
1819d4002b98SHong Zhang                                        0,
1820d4002b98SHong Zhang                                        0,
1821d4002b98SHong Zhang                                        0,
1822d4002b98SHong Zhang                                        0,
1823d4002b98SHong Zhang                                /* 94*/ 0,
1824d4002b98SHong Zhang                                        0,
1825d4002b98SHong Zhang                                        0,
1826d4002b98SHong Zhang                                        0,
1827d4002b98SHong Zhang                                        0,
1828d4002b98SHong Zhang                                /* 99*/ 0,
1829d4002b98SHong Zhang                                        0,
1830d4002b98SHong Zhang                                        0,
1831d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1832d4002b98SHong Zhang                                        0,
1833d4002b98SHong Zhang                                /*104*/ 0,
1834d4002b98SHong Zhang                                        0,
1835d4002b98SHong Zhang                                        0,
1836d4002b98SHong Zhang                                        0,
1837d4002b98SHong Zhang                                        0,
1838d4002b98SHong Zhang                                /*109*/ 0,
1839d4002b98SHong Zhang                                        0,
1840d4002b98SHong Zhang                                        0,
1841d4002b98SHong Zhang                                        0,
1842d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1843d4002b98SHong Zhang                                /*114*/ 0,
1844d4002b98SHong Zhang                                        0,
1845d4002b98SHong Zhang                                        0,
1846d4002b98SHong Zhang                                        0,
1847d4002b98SHong Zhang                                        0,
1848d4002b98SHong Zhang                                /*119*/ 0,
1849d4002b98SHong Zhang                                        0,
1850d4002b98SHong Zhang                                        0,
1851d4002b98SHong Zhang                                        0,
1852d4002b98SHong Zhang                                        0,
1853d4002b98SHong Zhang                                /*124*/ 0,
1854d4002b98SHong Zhang                                        0,
1855d4002b98SHong Zhang                                        0,
1856d4002b98SHong Zhang                                        0,
1857d4002b98SHong Zhang                                        0,
1858d4002b98SHong Zhang                                /*129*/ 0,
1859d4002b98SHong Zhang                                        0,
1860d4002b98SHong Zhang                                        0,
1861d4002b98SHong Zhang                                        0,
1862d4002b98SHong Zhang                                        0,
1863d4002b98SHong Zhang                                /*134*/ 0,
1864d4002b98SHong Zhang                                        0,
1865d4002b98SHong Zhang                                        0,
1866d4002b98SHong Zhang                                        0,
1867d4002b98SHong Zhang                                        0,
1868d4002b98SHong Zhang                                /*139*/ 0,
1869d4002b98SHong Zhang                                        0,
1870d4002b98SHong Zhang                                        0,
1871d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1872d4002b98SHong Zhang                                        0,
1873d4002b98SHong Zhang                                 /*144*/0
1874d4002b98SHong Zhang };
1875d4002b98SHong Zhang 
1876d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1877d4002b98SHong Zhang {
1878d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1879d4002b98SHong Zhang   PetscErrorCode ierr;
1880d4002b98SHong Zhang 
1881d4002b98SHong Zhang   PetscFunctionBegin;
1882d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1883d4002b98SHong Zhang 
1884d4002b98SHong Zhang   /* allocate space for values if not already there */
1885d4002b98SHong Zhang   if (!a->saved_values) {
1886d4002b98SHong Zhang     ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr);
1887d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr);
1888d4002b98SHong Zhang   }
1889d4002b98SHong Zhang 
1890d4002b98SHong Zhang   /* copy values over */
1891d4002b98SHong Zhang   ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1892d4002b98SHong Zhang   PetscFunctionReturn(0);
1893d4002b98SHong Zhang }
1894d4002b98SHong Zhang 
1895d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1896d4002b98SHong Zhang {
1897d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1898d4002b98SHong Zhang   PetscErrorCode ierr;
1899d4002b98SHong Zhang 
1900d4002b98SHong Zhang   PetscFunctionBegin;
1901d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1902d4002b98SHong Zhang   if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
1903d4002b98SHong Zhang   /* copy values over */
1904d4002b98SHong Zhang   ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1905d4002b98SHong Zhang   PetscFunctionReturn(0);
1906d4002b98SHong Zhang }
1907d4002b98SHong Zhang 
1908d4002b98SHong Zhang /*@C
1909d4002b98SHong Zhang  MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray()
1910d4002b98SHong Zhang 
1911d4002b98SHong Zhang  Not Collective
1912d4002b98SHong Zhang 
1913d4002b98SHong Zhang  Input Parameters:
1914d4002b98SHong Zhang  .  mat - a MATSEQSELL matrix
1915d4002b98SHong Zhang  .  array - pointer to the data
1916d4002b98SHong Zhang 
1917d4002b98SHong Zhang  Level: intermediate
1918d4002b98SHong Zhang 
1919d4002b98SHong Zhang  .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90()
1920d4002b98SHong Zhang  @*/
1921d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array)
1922d4002b98SHong Zhang {
1923d4002b98SHong Zhang   PetscErrorCode ierr;
1924d4002b98SHong Zhang 
1925d4002b98SHong Zhang   PetscFunctionBegin;
1926d4002b98SHong Zhang   ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
1927d4002b98SHong Zhang   PetscFunctionReturn(0);
1928d4002b98SHong Zhang }
1929d4002b98SHong Zhang 
1930d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
1931d4002b98SHong Zhang {
1932d4002b98SHong Zhang   Mat_SeqSELL    *b;
1933d4002b98SHong Zhang   PetscMPIInt    size;
1934d4002b98SHong Zhang   PetscErrorCode ierr;
1935d4002b98SHong Zhang 
1936d4002b98SHong Zhang   PetscFunctionBegin;
1937d4002b98SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1938d4002b98SHong Zhang   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1");
1939d4002b98SHong Zhang 
1940d4002b98SHong Zhang   ierr = PetscNewLog(B,&b);CHKERRQ(ierr);
1941d4002b98SHong Zhang 
1942d4002b98SHong Zhang   B->data = (void*)b;
1943d4002b98SHong Zhang 
1944d4002b98SHong Zhang   ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1945d4002b98SHong Zhang 
1946d4002b98SHong Zhang   b->row                = 0;
1947d4002b98SHong Zhang   b->col                = 0;
1948d4002b98SHong Zhang   b->icol               = 0;
1949d4002b98SHong Zhang   b->reallocs           = 0;
1950d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
1951d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
1952d4002b98SHong Zhang   b->nonew              = 0;
1953d4002b98SHong Zhang   b->diag               = 0;
1954d4002b98SHong Zhang   b->solve_work         = 0;
1955d4002b98SHong Zhang   B->spptr              = 0;
1956d4002b98SHong Zhang   b->saved_values       = 0;
1957d4002b98SHong Zhang   b->idiag              = 0;
1958d4002b98SHong Zhang   b->mdiag              = 0;
1959d4002b98SHong Zhang   b->ssor_work          = 0;
1960d4002b98SHong Zhang   b->omega              = 1.0;
1961d4002b98SHong Zhang   b->fshift             = 0.0;
1962d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
1963d4002b98SHong Zhang   b->ibdiagvalid        = PETSC_FALSE;
1964d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
1965d4002b98SHong Zhang 
1966d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr);
1967d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr);
1968d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr);
1969d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr);
1970d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr);
1971d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr);
1972d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr);
1973d4002b98SHong Zhang   PetscFunctionReturn(0);
1974d4002b98SHong Zhang }
1975d4002b98SHong Zhang 
1976d4002b98SHong Zhang /*
1977d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
1978d4002b98SHong Zhang  */
1979d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
1980d4002b98SHong Zhang {
1981d4002b98SHong Zhang   Mat_SeqSELL    *c,*a=(Mat_SeqSELL*)A->data;
1982d4002b98SHong Zhang   PetscInt       i,m=A->rmap->n;
1983d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
1984d4002b98SHong Zhang   PetscErrorCode ierr;
1985d4002b98SHong Zhang 
1986d4002b98SHong Zhang   PetscFunctionBegin;
1987d4002b98SHong Zhang   c = (Mat_SeqSELL*)C->data;
1988d4002b98SHong Zhang 
1989d4002b98SHong Zhang   C->factortype = A->factortype;
1990d4002b98SHong Zhang   c->row        = 0;
1991d4002b98SHong Zhang   c->col        = 0;
1992d4002b98SHong Zhang   c->icol       = 0;
1993d4002b98SHong Zhang   c->reallocs   = 0;
1994d4002b98SHong Zhang 
1995d4002b98SHong Zhang   C->assembled = PETSC_TRUE;
1996d4002b98SHong Zhang 
1997d4002b98SHong Zhang   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
1998d4002b98SHong Zhang   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
1999d4002b98SHong Zhang 
2000d4002b98SHong Zhang   ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr);
2001d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
2002d4002b98SHong Zhang   ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr);
2003d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
2004d4002b98SHong Zhang 
2005d4002b98SHong Zhang   for (i=0; i<m; i++) c->rlen[i] = a->rlen[i];
2006d4002b98SHong Zhang   for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i];
2007d4002b98SHong Zhang 
2008d4002b98SHong Zhang   /* allocate the matrix space */
2009d4002b98SHong Zhang   if (mallocmatspace) {
2010d4002b98SHong Zhang     ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr);
2011d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2012d4002b98SHong Zhang 
2013d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2014d4002b98SHong Zhang 
2015d4002b98SHong Zhang     if (m > 0) {
2016d4002b98SHong Zhang       ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr);
2017d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
2018d4002b98SHong Zhang         ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
2019d4002b98SHong Zhang       } else {
2020d4002b98SHong Zhang         ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
2021d4002b98SHong Zhang       }
2022d4002b98SHong Zhang     }
2023d4002b98SHong Zhang   }
2024d4002b98SHong Zhang 
2025d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
2026d4002b98SHong Zhang   c->roworiented       = a->roworiented;
2027d4002b98SHong Zhang   c->nonew             = a->nonew;
2028d4002b98SHong Zhang   if (a->diag) {
2029d4002b98SHong Zhang     ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr);
2030d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
2031d4002b98SHong Zhang     for (i=0; i<m; i++) {
2032d4002b98SHong Zhang       c->diag[i] = a->diag[i];
2033d4002b98SHong Zhang     }
2034d4002b98SHong Zhang   } else c->diag = 0;
2035d4002b98SHong Zhang 
2036d4002b98SHong Zhang   c->solve_work         = 0;
2037d4002b98SHong Zhang   c->saved_values       = 0;
2038d4002b98SHong Zhang   c->idiag              = 0;
2039d4002b98SHong Zhang   c->ssor_work          = 0;
2040d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2041d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2042d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2043d4002b98SHong Zhang 
2044d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2045d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2046d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2047d4002b98SHong Zhang   c->nz           = a->nz;
2048d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2049d4002b98SHong Zhang 
2050d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2051d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2052d4002b98SHong Zhang 
2053d4002b98SHong Zhang   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
2054d4002b98SHong Zhang   PetscFunctionReturn(0);
2055d4002b98SHong Zhang }
2056d4002b98SHong Zhang 
2057d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B)
2058d4002b98SHong Zhang {
2059d4002b98SHong Zhang   PetscErrorCode ierr;
2060d4002b98SHong Zhang 
2061d4002b98SHong Zhang   PetscFunctionBegin;
2062d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
2063d4002b98SHong Zhang   ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
2064d4002b98SHong Zhang   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) {
2065d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr);
2066d4002b98SHong Zhang   }
2067d4002b98SHong Zhang   ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr);
2068d4002b98SHong Zhang   ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
2069d4002b98SHong Zhang   PetscFunctionReturn(0);
2070d4002b98SHong Zhang }
2071d4002b98SHong Zhang 
2072d4002b98SHong Zhang /*@C
2073d4002b98SHong Zhang  MatCreateSeqSELL - Creates a sparse matrix in SELL format.
2074d4002b98SHong Zhang 
2075d4002b98SHong Zhang  Collective on MPI_Comm
2076d4002b98SHong Zhang 
2077d4002b98SHong Zhang  Input Parameters:
2078d4002b98SHong Zhang  +  comm - MPI communicator, set to PETSC_COMM_SELF
2079d4002b98SHong Zhang  .  m - number of rows
2080d4002b98SHong Zhang  .  n - number of columns
2081d4002b98SHong Zhang  .  rlenmax - maximum number of nonzeros in a row
2082d4002b98SHong Zhang  -  rlen - array containing the number of nonzeros in the various rows
2083d4002b98SHong Zhang  (possibly different for each row) or NULL
2084d4002b98SHong Zhang 
2085d4002b98SHong Zhang  Output Parameter:
2086d4002b98SHong Zhang  .  A - the matrix
2087d4002b98SHong Zhang 
2088d4002b98SHong Zhang  It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2089d4002b98SHong Zhang  MatXXXXSetPreallocation() paradgm instead of this routine directly.
2090d4002b98SHong Zhang  [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
2091d4002b98SHong Zhang 
2092d4002b98SHong Zhang  Notes:
2093d4002b98SHong Zhang  If nnz is given then nz is ignored
2094d4002b98SHong Zhang 
2095d4002b98SHong Zhang  Specify the preallocated storage with either rlenmax or rlen (not both).
2096d4002b98SHong Zhang  Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory
2097d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
2098d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
2099d4002b98SHong Zhang 
2100d4002b98SHong Zhang  Level: intermediate
2101d4002b98SHong Zhang 
2102d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays()
2103d4002b98SHong Zhang 
2104d4002b98SHong Zhang  @*/
2105d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A)
2106d4002b98SHong Zhang {
2107d4002b98SHong Zhang   PetscErrorCode ierr;
2108d4002b98SHong Zhang 
2109d4002b98SHong Zhang   PetscFunctionBegin;
2110d4002b98SHong Zhang   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2111d4002b98SHong Zhang   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2112d4002b98SHong Zhang   ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr);
2113d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr);
2114d4002b98SHong Zhang   PetscFunctionReturn(0);
2115d4002b98SHong Zhang }
2116d4002b98SHong Zhang 
2117d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)
2118d4002b98SHong Zhang {
2119d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data;
2120d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
2121d4002b98SHong Zhang   PetscErrorCode ierr;
2122d4002b98SHong Zhang 
2123d4002b98SHong Zhang   PetscFunctionBegin;
2124d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2125d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2126d4002b98SHong Zhang     *flg = PETSC_FALSE;
2127d4002b98SHong Zhang     PetscFunctionReturn(0);
2128d4002b98SHong Zhang   }
2129d4002b98SHong Zhang   /* if the a->colidx are the same */
2130d4002b98SHong Zhang   ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr);
2131d4002b98SHong Zhang   if (!*flg) PetscFunctionReturn(0);
2132d4002b98SHong Zhang   /* if a->val are the same */
2133d4002b98SHong Zhang   ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr);
2134d4002b98SHong Zhang   PetscFunctionReturn(0);
2135d4002b98SHong Zhang }
2136d4002b98SHong Zhang 
2137d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2138d4002b98SHong Zhang {
2139d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2140d4002b98SHong Zhang 
2141d4002b98SHong Zhang   PetscFunctionBegin;
2142d4002b98SHong Zhang   a->idiagvalid  = PETSC_FALSE;
2143d4002b98SHong Zhang   a->ibdiagvalid = PETSC_FALSE;
2144d4002b98SHong Zhang   PetscFunctionReturn(0);
2145d4002b98SHong Zhang }
2146d4002b98SHong Zhang 
2147d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A)
2148d4002b98SHong Zhang {
2149d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2150d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2151d4002b98SHong Zhang   PetscInt    i;
2152d4002b98SHong Zhang   PetscScalar *val = a->val;
2153d4002b98SHong Zhang 
2154d4002b98SHong Zhang   PetscFunctionBegin;
2155d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) {
2156d4002b98SHong Zhang     val[i] = PetscConj(val[i]);
2157d4002b98SHong Zhang   }
2158d4002b98SHong Zhang #else
2159d4002b98SHong Zhang   PetscFunctionBegin;
2160d4002b98SHong Zhang #endif
2161d4002b98SHong Zhang   PetscFunctionReturn(0);
2162d4002b98SHong Zhang }
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