1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) 9d4002b98SHong Zhang #include <immintrin.h> 10d4002b98SHong Zhang 11d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 12d4002b98SHong Zhang #define _MM_SCALE_8 8 13d4002b98SHong Zhang #endif 14d4002b98SHong Zhang 15d4002b98SHong Zhang #if defined(__AVX512F__) 16d4002b98SHong Zhang /* these do not work 17d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 18d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 19d4002b98SHong Zhang */ 20d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 21d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 22d4002b98SHong Zhang vec_idx = _mm256_load_si256((__m256i const*)acolidx); \ 23d4002b98SHong Zhang vec_vals = _mm512_load_pd(aval); \ 24d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 25d4002b98SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y); 26d4002b98SHong Zhang 27d4002b98SHong Zhang #endif 28d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 29d4002b98SHong Zhang 30d4002b98SHong Zhang /*@C 31d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 32d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 33d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 34d4002b98SHong Zhang during matrix assembly can be increased significantly. 35d4002b98SHong Zhang 36d4002b98SHong Zhang Collective on MPI_Comm 37d4002b98SHong Zhang 38d4002b98SHong Zhang Input Parameters: 39d4002b98SHong Zhang + B - The matrix 40d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 41d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 42d4002b98SHong Zhang (possibly different for each row) or NULL 43d4002b98SHong Zhang 44d4002b98SHong Zhang Notes: 45d4002b98SHong Zhang If nnz is given then nz is ignored. 46d4002b98SHong Zhang 47d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 48d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 49d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 50d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 51d4002b98SHong Zhang 52d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 53d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 54d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 55d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 56d4002b98SHong Zhang 57d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 58d4002b98SHong Zhang entries or columns indices. 59d4002b98SHong Zhang 60d4002b98SHong Zhang The maximum number of nonzeos in any row should be as accuate as possible. 61d4002b98SHong Zhang If it is underesitmated, you will get bad performance due to reallocation 62d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 63d4002b98SHong Zhang 64d4002b98SHong Zhang Level: intermediate 65d4002b98SHong Zhang 66d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 67d4002b98SHong Zhang 68d4002b98SHong Zhang @*/ 69d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 70d4002b98SHong Zhang { 71d4002b98SHong Zhang PetscErrorCode ierr; 72d4002b98SHong Zhang 73d4002b98SHong Zhang PetscFunctionBegin; 74d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 75d4002b98SHong Zhang PetscValidType(B,1); 76d4002b98SHong Zhang ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr); 77d4002b98SHong Zhang PetscFunctionReturn(0); 78d4002b98SHong Zhang } 79d4002b98SHong Zhang 80d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 81d4002b98SHong Zhang { 82d4002b98SHong Zhang Mat_SeqSELL *b; 83d4002b98SHong Zhang PetscInt i,j,totalslices; 84d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 85d4002b98SHong Zhang PetscErrorCode ierr; 86d4002b98SHong Zhang 87d4002b98SHong Zhang PetscFunctionBegin; 88d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 89d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 90d4002b98SHong Zhang skipallocation = PETSC_TRUE; 91d4002b98SHong Zhang maxallocrow = 0; 92d4002b98SHong Zhang } 93d4002b98SHong Zhang 94d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 95d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 96d4002b98SHong Zhang 97d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 98d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 99d4002b98SHong Zhang if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow); 100d4002b98SHong Zhang if (rlen) { 101d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 102d4002b98SHong Zhang if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]); 103d4002b98SHong Zhang if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n); 104d4002b98SHong Zhang } 105d4002b98SHong Zhang } 106d4002b98SHong Zhang 107d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 108d4002b98SHong Zhang 109d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 110d4002b98SHong Zhang 111d4002b98SHong Zhang totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */ 112d4002b98SHong Zhang b->totalslices = totalslices; 113d4002b98SHong Zhang if (!skipallocation) { 114d4002b98SHong Zhang if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n); 115d4002b98SHong Zhang 116d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 117d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr); 118d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 119d4002b98SHong Zhang } 120d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 121d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 122d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 123d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 124d4002b98SHong Zhang } else { 125d4002b98SHong Zhang maxallocrow = 0; 126d4002b98SHong Zhang b->sliidx[0] = 0; 127d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 128d4002b98SHong Zhang b->sliidx[i] = 0; 129d4002b98SHong Zhang for (j=0;j<8;j++) { 130d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 131d4002b98SHong Zhang } 132d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 133d4002b98SHong Zhang b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i]; 134d4002b98SHong Zhang } 135d4002b98SHong Zhang /* last slice */ 136d4002b98SHong Zhang b->sliidx[totalslices] = 0; 137d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 138d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 139d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 140d4002b98SHong Zhang } 141d4002b98SHong Zhang 142d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 143d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 144d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr); 145d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 146d4002b98SHong Zhang ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr); 147d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 148d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 149d4002b98SHong Zhang ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr); 150d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr); 151d4002b98SHong Zhang 152d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 153d4002b98SHong Zhang b->free_val = PETSC_TRUE; 154d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 155d4002b98SHong Zhang } else { 156d4002b98SHong Zhang b->free_val = PETSC_FALSE; 157d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 158d4002b98SHong Zhang } 159d4002b98SHong Zhang 160d4002b98SHong Zhang b->nz = 0; 161d4002b98SHong Zhang b->maxallocrow = maxallocrow; 162d4002b98SHong Zhang b->rlenmax = maxallocrow; 163d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 164d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 165d4002b98SHong Zhang if (realalloc) { 166d4002b98SHong Zhang ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 167d4002b98SHong Zhang } 168d4002b98SHong Zhang PetscFunctionReturn(0); 169d4002b98SHong Zhang } 170d4002b98SHong Zhang 171d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 172d4002b98SHong Zhang { 173d4002b98SHong Zhang Mat B; 174d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 175d4002b98SHong Zhang PetscInt i,j,row; 176d4002b98SHong Zhang PetscBool isnonzero; 177d4002b98SHong Zhang PetscErrorCode ierr; 178d4002b98SHong Zhang 179d4002b98SHong Zhang PetscFunctionBegin; 180d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 181d4002b98SHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 182d4002b98SHong Zhang ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 183d4002b98SHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr); 184d4002b98SHong Zhang ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 185d4002b98SHong Zhang 186d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 187d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 188d4002b98SHong Zhang isnonzero = (PetscBool)((j-a->sliidx[i])/8 < a->rlen[8*i+row]); 189d4002b98SHong Zhang if (isnonzero) { 190d4002b98SHong Zhang ierr = MatSetValue(B,8*i+row,a->colidx[j],a->val[j],INSERT_VALUES);CHKERRQ(ierr); 191d4002b98SHong Zhang } 192d4002b98SHong Zhang } 193d4002b98SHong Zhang } 194d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 195d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 197d4002b98SHong Zhang 198d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 199d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 200d4002b98SHong Zhang } else { 201d4002b98SHong Zhang *newmat = B; 202d4002b98SHong Zhang } 203d4002b98SHong Zhang PetscFunctionReturn(0); 204d4002b98SHong Zhang } 205d4002b98SHong Zhang 206d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 207d4002b98SHong Zhang 208d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 209d4002b98SHong Zhang { 210d4002b98SHong Zhang Mat B; 211d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 212d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 213d4002b98SHong Zhang const PetscInt *cols; 214d4002b98SHong Zhang const PetscScalar *vals; 215d4002b98SHong Zhang PetscErrorCode ierr; 216d4002b98SHong Zhang 217d4002b98SHong Zhang PetscFunctionBegin; 218d4002b98SHong Zhang if (A->rmap->bs > 1) { 219d4002b98SHong Zhang ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr); 220d4002b98SHong Zhang PetscFunctionReturn(0); 221d4002b98SHong Zhang } 222d4002b98SHong Zhang /* Can we just use ilen? */ 223d4002b98SHong Zhang ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr); 224d4002b98SHong Zhang for (i=0; i<m; i++) { 225d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 226d4002b98SHong Zhang } 227d4002b98SHong Zhang 228d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 229d4002b98SHong Zhang ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 230d4002b98SHong Zhang ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr); 231d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr); 232d4002b98SHong Zhang ierr = PetscFree(rowlengths);CHKERRQ(ierr); 233d4002b98SHong Zhang 234d4002b98SHong Zhang ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 235d4002b98SHong Zhang 236d4002b98SHong Zhang for (row=0; row<m; row++) { 237d4002b98SHong Zhang ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 238d4002b98SHong Zhang ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 239d4002b98SHong Zhang ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 240d4002b98SHong Zhang } 241d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 242d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 243d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 244d4002b98SHong Zhang 245d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 246d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 247d4002b98SHong Zhang } else { 248d4002b98SHong Zhang *newmat = B; 249d4002b98SHong Zhang } 250d4002b98SHong Zhang PetscFunctionReturn(0); 251d4002b98SHong Zhang } 252d4002b98SHong Zhang 253d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 254d4002b98SHong Zhang { 255d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 256d4002b98SHong Zhang PetscScalar *y; 257d4002b98SHong Zhang const PetscScalar *x; 258d4002b98SHong Zhang const MatScalar *aval=a->val; 259d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 260d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 261*7285fed1SHong Zhang PetscInt i,j; 262d4002b98SHong Zhang PetscErrorCode ierr; 263d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 264d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 265d4002b98SHong Zhang __m256i vec_idx; 266d4002b98SHong Zhang __mmask8 mask; 267d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 268d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 269d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 270d4002b98SHong Zhang __m128d vec_x_tmp; 271d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 272d4002b98SHong Zhang MatScalar yval; 273d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 274d4002b98SHong Zhang #else 275d4002b98SHong Zhang PetscScalar sum[8]; 276d4002b98SHong Zhang #endif 277d4002b98SHong Zhang 278d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 279d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 280d4002b98SHong Zhang #endif 281d4002b98SHong Zhang 282d4002b98SHong Zhang PetscFunctionBegin; 283d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 284d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 285d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 286d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 287d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 288d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 289d4002b98SHong Zhang 290d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 291d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 292d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 293d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 294d4002b98SHong Zhang 29538efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 296d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 297d4002b98SHong Zhang case 3: 298d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 299d4002b98SHong Zhang acolidx += 8; aval += 8; 300d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 301d4002b98SHong Zhang acolidx += 8; aval += 8; 302d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 303d4002b98SHong Zhang acolidx += 8; aval += 8; 304d4002b98SHong Zhang j += 3; 305d4002b98SHong Zhang break; 306d4002b98SHong Zhang case 2: 307d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 308d4002b98SHong Zhang acolidx += 8; aval += 8; 309d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 310d4002b98SHong Zhang acolidx += 8; aval += 8; 311d4002b98SHong Zhang j += 2; 312d4002b98SHong Zhang break; 313d4002b98SHong Zhang case 1: 314d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 315d4002b98SHong Zhang acolidx += 8; aval += 8; 316d4002b98SHong Zhang j += 1; 317d4002b98SHong Zhang break; 318d4002b98SHong Zhang } 319d4002b98SHong Zhang #pragma novector 320d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 321d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 322d4002b98SHong Zhang acolidx += 8; aval += 8; 323d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 324d4002b98SHong Zhang acolidx += 8; aval += 8; 325d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 326d4002b98SHong Zhang acolidx += 8; aval += 8; 327d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 328d4002b98SHong Zhang acolidx += 8; aval += 8; 329d4002b98SHong Zhang } 330d4002b98SHong Zhang 331d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 332d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 333d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 334d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 335d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 336d4002b98SHong Zhang _mm512_mask_store_pd(&y[8*i],mask,vec_y); 337d4002b98SHong Zhang } else { 338d4002b98SHong Zhang _mm512_store_pd(&y[8*i],vec_y); 339d4002b98SHong Zhang } 340d4002b98SHong Zhang } 341d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 342d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 343d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 344d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 345d4002b98SHong Zhang 346d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 347d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 348d4002b98SHong Zhang 349d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 350d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 351d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 352d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 353d4002b98SHong Zhang yval = (MatScalar)0; 354d4002b98SHong Zhang row = 8*i + r; 355d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 356d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 357d4002b98SHong Zhang y[row] = yval; 358d4002b98SHong Zhang } 359d4002b98SHong Zhang break; 360d4002b98SHong Zhang } 361d4002b98SHong Zhang 362d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 363*7285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 364d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 365d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 366d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 367d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 368d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 369d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 370d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 371d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 372d4002b98SHong Zhang aval += 4; 373d4002b98SHong Zhang 374d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 375d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 376d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 377d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 378d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 379d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 380d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 381d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 382d4002b98SHong Zhang aval += 4; 383d4002b98SHong Zhang } 384d4002b98SHong Zhang 385d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 386d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 387d4002b98SHong Zhang } 388d4002b98SHong Zhang #else 389d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 390d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 391d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 392d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 393d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 394d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 395d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 396d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 397d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 398d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 399d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 400d4002b98SHong Zhang } 401d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 402d4002b98SHong Zhang for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 403d4002b98SHong Zhang } else { 404*7285fed1SHong Zhang for(j=0; j<8; j++) y[8*i+j] = sum[j]; 405d4002b98SHong Zhang } 406d4002b98SHong Zhang } 407d4002b98SHong Zhang #endif 408d4002b98SHong Zhang 409d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */ 410d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 411d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 412d4002b98SHong Zhang PetscFunctionReturn(0); 413d4002b98SHong Zhang } 414d4002b98SHong Zhang 415d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 416d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 417d4002b98SHong Zhang { 418d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 419d4002b98SHong Zhang PetscScalar *y,*z; 420d4002b98SHong Zhang const PetscScalar *x; 421d4002b98SHong Zhang const MatScalar *aval=a->val; 422d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 423d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 424d4002b98SHong Zhang PetscInt i,j; 425d4002b98SHong Zhang PetscErrorCode ierr; 426d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 427*7285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 428d4002b98SHong Zhang __m256i vec_idx; 429d4002b98SHong Zhang __mmask8 mask; 430*7285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 431*7285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 432*7285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 433*7285fed1SHong Zhang __m128d vec_x_tmp; 434*7285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 435*7285fed1SHong Zhang MatScalar yval; 436*7285fed1SHong Zhang PetscInt r,row,nnz_in_row; 437d4002b98SHong Zhang #else 438d4002b98SHong Zhang PetscScalar sum[8]; 439d4002b98SHong Zhang #endif 440d4002b98SHong Zhang 441d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 442d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 443d4002b98SHong Zhang #endif 444d4002b98SHong Zhang 445d4002b98SHong Zhang PetscFunctionBegin; 446d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 447d4002b98SHong Zhang ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 448d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 449*7285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 450*7285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 451*7285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 452*7285fed1SHong Zhang 453d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 454d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 455*7285fed1SHong Zhang vec_y = _mm512_mask_load_pd(vec_y,mask,&y[8*i]); 456*7285fed1SHong Zhang } else { 457*7285fed1SHong Zhang vec_y = _mm512_load_pd(&y[8*i]); 458*7285fed1SHong Zhang } 459*7285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 460*7285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 461*7285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 462*7285fed1SHong Zhang 463*7285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 464*7285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 465*7285fed1SHong Zhang case 3: 466*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 467*7285fed1SHong Zhang acolidx += 8; aval += 8; 468*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 469*7285fed1SHong Zhang acolidx += 8; aval += 8; 470*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 471*7285fed1SHong Zhang acolidx += 8; aval += 8; 472*7285fed1SHong Zhang j += 3; 473*7285fed1SHong Zhang break; 474*7285fed1SHong Zhang case 2: 475*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 476*7285fed1SHong Zhang acolidx += 8; aval += 8; 477*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 478*7285fed1SHong Zhang acolidx += 8; aval += 8; 479*7285fed1SHong Zhang j += 2; 480*7285fed1SHong Zhang break; 481*7285fed1SHong Zhang case 1: 482*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 483*7285fed1SHong Zhang acolidx += 8; aval += 8; 484*7285fed1SHong Zhang j += 1; 485*7285fed1SHong Zhang break; 486*7285fed1SHong Zhang } 487*7285fed1SHong Zhang #pragma novector 488*7285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 489*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 490*7285fed1SHong Zhang acolidx += 8; aval += 8; 491*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 492*7285fed1SHong Zhang acolidx += 8; aval += 8; 493*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 494*7285fed1SHong Zhang acolidx += 8; aval += 8; 495*7285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 496*7285fed1SHong Zhang acolidx += 8; aval += 8; 497*7285fed1SHong Zhang } 498*7285fed1SHong Zhang 499*7285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 500*7285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 501*7285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 502*7285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 503d4002b98SHong Zhang _mm512_mask_store_pd(&z[8*i],mask,vec_y); 504d4002b98SHong Zhang } else { 505d4002b98SHong Zhang _mm512_store_pd(&z[8*i],vec_y); 506d4002b98SHong Zhang } 507*7285fed1SHong Zhang } 508*7285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) 509*7285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 510*7285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 511*7285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 512*7285fed1SHong Zhang 513*7285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 514*7285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 515*7285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 516*7285fed1SHong Zhang row = 8*i + r; 517*7285fed1SHong Zhang yval = (MatScalar)0.0; 518*7285fed1SHong Zhang nnz_in_row = a->rlen[row]; 519*7285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 520*7285fed1SHong Zhang z[row] = y[row] + yval; 521*7285fed1SHong Zhang } 522*7285fed1SHong Zhang break; 523*7285fed1SHong Zhang } 524*7285fed1SHong Zhang 525*7285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 526*7285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 527*7285fed1SHong Zhang 528*7285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 529*7285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 530*7285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 531*7285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 532*7285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 533*7285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 534*7285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 535*7285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 536*7285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 537*7285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 538*7285fed1SHong Zhang aval += 4; 539*7285fed1SHong Zhang 540*7285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 541*7285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 542*7285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 543*7285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 544*7285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 545*7285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 546*7285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 547*7285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 548*7285fed1SHong Zhang aval += 4; 549*7285fed1SHong Zhang } 550*7285fed1SHong Zhang 551*7285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 552*7285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 553*7285fed1SHong Zhang } 554d4002b98SHong Zhang #else 555*7285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 556*7285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 557d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 558d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 559d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 560d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 561d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 562d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 563d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 564d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 565d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 566d4002b98SHong Zhang } 567*7285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 568*7285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 569d4002b98SHong Zhang } else { 570*7285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 571*7285fed1SHong Zhang } 572d4002b98SHong Zhang } 573d4002b98SHong Zhang #endif 574d4002b98SHong Zhang 575d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 576d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 577d4002b98SHong Zhang ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 578d4002b98SHong Zhang PetscFunctionReturn(0); 579d4002b98SHong Zhang } 580d4002b98SHong Zhang 581d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 582d4002b98SHong Zhang { 583d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 584d4002b98SHong Zhang PetscScalar *y; 585d4002b98SHong Zhang const PetscScalar *x; 586d4002b98SHong Zhang const MatScalar *aval=a->val; 587d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 588*7285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 589d4002b98SHong Zhang PetscErrorCode ierr; 590d4002b98SHong Zhang 591d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 592d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 593d4002b98SHong Zhang #endif 594d4002b98SHong Zhang 595d4002b98SHong Zhang PetscFunctionBegin; 596d4002b98SHong Zhang if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); } 597d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 598d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 599d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 600*7285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 601*7285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 602*7285fed1SHong Zhang row = 8*i + r; 603*7285fed1SHong Zhang nnz_in_row = a->rlen[row]; 604*7285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 605*7285fed1SHong Zhang } 606*7285fed1SHong Zhang break; 607*7285fed1SHong Zhang } 608*7285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 609*7285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 610*7285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 611*7285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 612*7285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 613*7285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 614*7285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 615*7285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 616*7285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 617d4002b98SHong Zhang } 618d4002b98SHong Zhang } 619d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr); 620d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 621d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 622d4002b98SHong Zhang PetscFunctionReturn(0); 623d4002b98SHong Zhang } 624d4002b98SHong Zhang 625d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 626d4002b98SHong Zhang { 627d4002b98SHong Zhang PetscErrorCode ierr; 628d4002b98SHong Zhang 629d4002b98SHong Zhang PetscFunctionBegin; 630d4002b98SHong Zhang ierr = VecSet(yy,0.0);CHKERRQ(ierr); 631d4002b98SHong Zhang ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr); 632d4002b98SHong Zhang PetscFunctionReturn(0); 633d4002b98SHong Zhang } 634d4002b98SHong Zhang 635d4002b98SHong Zhang /* 636d4002b98SHong Zhang Checks for missing diagonals 637d4002b98SHong Zhang */ 638d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 639d4002b98SHong Zhang { 640d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 641d4002b98SHong Zhang PetscInt *diag,i; 642d4002b98SHong Zhang 643d4002b98SHong Zhang PetscFunctionBegin; 644d4002b98SHong Zhang *missing = PETSC_FALSE; 645d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 646d4002b98SHong Zhang *missing = PETSC_TRUE; 647d4002b98SHong Zhang if (d) *d = 0; 648d4002b98SHong Zhang PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n"); 649d4002b98SHong Zhang } else { 650d4002b98SHong Zhang diag = a->diag; 651d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 652d4002b98SHong Zhang if (diag[i] == -1) { 653d4002b98SHong Zhang *missing = PETSC_TRUE; 654d4002b98SHong Zhang if (d) *d = i; 655d4002b98SHong Zhang PetscInfo1(A,"Matrix is missing diagonal number %D\n",i); 656d4002b98SHong Zhang break; 657d4002b98SHong Zhang } 658d4002b98SHong Zhang } 659d4002b98SHong Zhang } 660d4002b98SHong Zhang PetscFunctionReturn(0); 661d4002b98SHong Zhang } 662d4002b98SHong Zhang 663d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 664d4002b98SHong Zhang { 665d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 666d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 667d4002b98SHong Zhang PetscErrorCode ierr; 668d4002b98SHong Zhang 669d4002b98SHong Zhang PetscFunctionBegin; 670d4002b98SHong Zhang if (!a->diag) { 671d4002b98SHong Zhang ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 672d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 673d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 674d4002b98SHong Zhang } 675d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 676d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 677d4002b98SHong Zhang a->diag[i] = -1; 678d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 679d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 680d4002b98SHong Zhang a->diag[i] = shift+j*8; 681d4002b98SHong Zhang break; 682d4002b98SHong Zhang } 683d4002b98SHong Zhang } 684d4002b98SHong Zhang } 685d4002b98SHong Zhang PetscFunctionReturn(0); 686d4002b98SHong Zhang } 687d4002b98SHong Zhang 688d4002b98SHong Zhang /* 689d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 690d4002b98SHong Zhang */ 691d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 692d4002b98SHong Zhang { 693d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 694d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 695d4002b98SHong Zhang MatScalar *val = a->val; 696d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 697d4002b98SHong Zhang PetscErrorCode ierr; 698d4002b98SHong Zhang 699d4002b98SHong Zhang PetscFunctionBegin; 700d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 701d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 702d4002b98SHong Zhang diag = a->diag; 703d4002b98SHong Zhang if (!a->idiag) { 704d4002b98SHong Zhang ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr); 705d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr); 706d4002b98SHong Zhang val = a->val; 707d4002b98SHong Zhang } 708d4002b98SHong Zhang mdiag = a->mdiag; 709d4002b98SHong Zhang idiag = a->idiag; 710d4002b98SHong Zhang 711d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 712d4002b98SHong Zhang for (i=0; i<m; i++) { 713d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 714d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 715d4002b98SHong Zhang if (PetscRealPart(fshift)) { 716d4002b98SHong Zhang ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr); 717d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 718d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 719d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 720d4002b98SHong Zhang } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i); 721d4002b98SHong Zhang } 722d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 723d4002b98SHong Zhang } 724d4002b98SHong Zhang ierr = PetscLogFlops(m);CHKERRQ(ierr); 725d4002b98SHong Zhang } else { 726d4002b98SHong Zhang for (i=0; i<m; i++) { 727d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 728d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 729d4002b98SHong Zhang } 730d4002b98SHong Zhang ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr); 731d4002b98SHong Zhang } 732d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 733d4002b98SHong Zhang PetscFunctionReturn(0); 734d4002b98SHong Zhang } 735d4002b98SHong Zhang 736d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 737d4002b98SHong Zhang { 738d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 739d4002b98SHong Zhang PetscErrorCode ierr; 740d4002b98SHong Zhang 741d4002b98SHong Zhang PetscFunctionBegin; 742d4002b98SHong Zhang ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr); 743d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 744d4002b98SHong Zhang PetscFunctionReturn(0); 745d4002b98SHong Zhang } 746d4002b98SHong Zhang 747d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 748d4002b98SHong Zhang { 749d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 750d4002b98SHong Zhang PetscErrorCode ierr; 751d4002b98SHong Zhang 752d4002b98SHong Zhang PetscFunctionBegin; 753d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 754d4002b98SHong Zhang PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz); 755d4002b98SHong Zhang #endif 756d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr); 757d4002b98SHong Zhang ierr = ISDestroy(&a->row);CHKERRQ(ierr); 758d4002b98SHong Zhang ierr = ISDestroy(&a->col);CHKERRQ(ierr); 759d4002b98SHong Zhang ierr = PetscFree(a->diag);CHKERRQ(ierr); 760d4002b98SHong Zhang ierr = PetscFree(a->ibdiag);CHKERRQ(ierr); 761d4002b98SHong Zhang ierr = PetscFree(a->rlen);CHKERRQ(ierr); 762d4002b98SHong Zhang ierr = PetscFree(a->sliidx);CHKERRQ(ierr); 763d4002b98SHong Zhang ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr); 764d4002b98SHong Zhang ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 765d4002b98SHong Zhang ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 766d4002b98SHong Zhang ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 767d4002b98SHong Zhang 768d4002b98SHong Zhang ierr = PetscFree(A->data);CHKERRQ(ierr); 769d4002b98SHong Zhang 770d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 771d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 772d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 773d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 774d4002b98SHong Zhang #endif 775d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr); 776d4002b98SHong Zhang PetscFunctionReturn(0); 777d4002b98SHong Zhang } 778d4002b98SHong Zhang 779d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 780d4002b98SHong Zhang { 781d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 782d4002b98SHong Zhang PetscErrorCode ierr; 783d4002b98SHong Zhang 784d4002b98SHong Zhang PetscFunctionBegin; 785d4002b98SHong Zhang switch (op) { 786d4002b98SHong Zhang case MAT_ROW_ORIENTED: 787d4002b98SHong Zhang a->roworiented = flg; 788d4002b98SHong Zhang break; 789d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 790d4002b98SHong Zhang a->keepnonzeropattern = flg; 791d4002b98SHong Zhang break; 792d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 793d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 794d4002b98SHong Zhang break; 795d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 796d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 797d4002b98SHong Zhang break; 798d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 799d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 800d4002b98SHong Zhang break; 801d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 802d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 803d4002b98SHong Zhang break; 804d4002b98SHong Zhang case MAT_NEW_DIAGONALS: 805d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 806d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 807d4002b98SHong Zhang ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 808d4002b98SHong Zhang break; 809d4002b98SHong Zhang case MAT_SPD: 810d4002b98SHong Zhang case MAT_SYMMETRIC: 811d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 812d4002b98SHong Zhang case MAT_HERMITIAN: 813d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 814d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 815d4002b98SHong Zhang break; 816d4002b98SHong Zhang default: 817d4002b98SHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 818d4002b98SHong Zhang } 819d4002b98SHong Zhang PetscFunctionReturn(0); 820d4002b98SHong Zhang } 821d4002b98SHong Zhang 822d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 823d4002b98SHong Zhang { 824d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 825d4002b98SHong Zhang PetscInt i,j,n,shift; 826d4002b98SHong Zhang PetscScalar *x,zero=0.0; 827d4002b98SHong Zhang PetscErrorCode ierr; 828d4002b98SHong Zhang 829d4002b98SHong Zhang PetscFunctionBegin; 830d4002b98SHong Zhang ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 831d4002b98SHong Zhang if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 832d4002b98SHong Zhang 833d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 834d4002b98SHong Zhang PetscInt *diag=a->diag; 835d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 836d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 837d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 838d4002b98SHong Zhang PetscFunctionReturn(0); 839d4002b98SHong Zhang } 840d4002b98SHong Zhang 841d4002b98SHong Zhang ierr = VecSet(v,zero);CHKERRQ(ierr); 842d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 843d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 844d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 845d4002b98SHong Zhang x[i] = 0; 846d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 847d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 848d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 849d4002b98SHong Zhang break; 850d4002b98SHong Zhang } 851d4002b98SHong Zhang } 852d4002b98SHong Zhang } 853d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 854d4002b98SHong Zhang PetscFunctionReturn(0); 855d4002b98SHong Zhang } 856d4002b98SHong Zhang 857d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 858d4002b98SHong Zhang { 859d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 860d4002b98SHong Zhang const PetscScalar *l,*r; 861d4002b98SHong Zhang PetscInt i,j,m,n,row; 862d4002b98SHong Zhang PetscErrorCode ierr; 863d4002b98SHong Zhang 864d4002b98SHong Zhang PetscFunctionBegin; 865d4002b98SHong Zhang if (ll) { 866d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 867d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 868d4002b98SHong Zhang ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr); 869d4002b98SHong Zhang if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 870d4002b98SHong Zhang ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 871d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 872d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 873d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 874d4002b98SHong Zhang } 875d4002b98SHong Zhang } 876d4002b98SHong Zhang ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 877d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 878d4002b98SHong Zhang } 879d4002b98SHong Zhang if (rr) { 880d4002b98SHong Zhang ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr); 881d4002b98SHong Zhang if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 882d4002b98SHong Zhang ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 883d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 884d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 885d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 886d4002b98SHong Zhang } 887d4002b98SHong Zhang } 888d4002b98SHong Zhang ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 889d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 890d4002b98SHong Zhang } 891d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 892d4002b98SHong Zhang PetscFunctionReturn(0); 893d4002b98SHong Zhang } 894d4002b98SHong Zhang 895d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 896d4002b98SHong Zhang 897d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 898d4002b98SHong Zhang { 899d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 900d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 901d4002b98SHong Zhang PetscInt shift; 902d4002b98SHong Zhang MatScalar *vp; 903d4002b98SHong Zhang 904d4002b98SHong Zhang PetscFunctionBegin; 905d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 906d4002b98SHong Zhang row = im[k]; 907d4002b98SHong Zhang if (row<0) continue; 908d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 909d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 910d4002b98SHong Zhang #endif 911d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 912d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 913d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 914d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added rows */ 915d4002b98SHong Zhang col = in[l]; 916d4002b98SHong Zhang if (col<0) continue; 917d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 918d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1); 919d4002b98SHong Zhang #endif 920d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 921d4002b98SHong Zhang while (high-low > 5) { 922d4002b98SHong Zhang t = (low+high)/2; 923d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 924d4002b98SHong Zhang else low = t; 925d4002b98SHong Zhang } 926d4002b98SHong Zhang for (i=low; i<high; i++) { 927d4002b98SHong Zhang if (*(cp+8*i) > col) break; 928d4002b98SHong Zhang if (*(cp+8*i) == col) { 929d4002b98SHong Zhang *v++ = *(vp+8*i); 930d4002b98SHong Zhang goto finished; 931d4002b98SHong Zhang } 932d4002b98SHong Zhang } 933d4002b98SHong Zhang *v++ = 0.0; 934d4002b98SHong Zhang finished:; 935d4002b98SHong Zhang } 936d4002b98SHong Zhang } 937d4002b98SHong Zhang PetscFunctionReturn(0); 938d4002b98SHong Zhang } 939d4002b98SHong Zhang 940d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 941d4002b98SHong Zhang { 942d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 943d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 944d4002b98SHong Zhang const char *name; 945d4002b98SHong Zhang PetscViewerFormat format; 946d4002b98SHong Zhang PetscErrorCode ierr; 947d4002b98SHong Zhang 948d4002b98SHong Zhang PetscFunctionBegin; 949d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 950d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 951d4002b98SHong Zhang PetscInt nofinalvalue = 0; 952d4002b98SHong Zhang /* 953d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 954d4002b98SHong Zhang nofinalvalue = 1; 955d4002b98SHong Zhang } 956d4002b98SHong Zhang */ 957d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 958d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr); 959d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr); 960d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 961d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 962d4002b98SHong Zhang #else 963d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 964d4002b98SHong Zhang #endif 965d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr); 966d4002b98SHong Zhang 967d4002b98SHong Zhang for (i=0; i<m; i++) { 968d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 969d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 970d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 971d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 972d4002b98SHong Zhang #else 973d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr); 974d4002b98SHong Zhang #endif 975d4002b98SHong Zhang } 976d4002b98SHong Zhang } 977d4002b98SHong Zhang /* 978d4002b98SHong Zhang if (nofinalvalue) { 979d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 980d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr); 981d4002b98SHong Zhang #else 982d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr); 983d4002b98SHong Zhang #endif 984d4002b98SHong Zhang } 985d4002b98SHong Zhang */ 986d4002b98SHong Zhang ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 987d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr); 988d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 989d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 990d4002b98SHong Zhang PetscFunctionReturn(0); 991d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 992d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 993d4002b98SHong Zhang for (i=0; i<m; i++) { 994d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 995d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 996d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 997d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 998d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 999d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1000d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1001d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1002d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1003d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1004d4002b98SHong Zhang } 1005d4002b98SHong Zhang #else 1006d4002b98SHong Zhang if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);} 1007d4002b98SHong Zhang #endif 1008d4002b98SHong Zhang } 1009d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1010d4002b98SHong Zhang } 1011d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1012d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1013d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1014d4002b98SHong Zhang PetscScalar value; 1015d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1016d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1017d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1018d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1019d4002b98SHong Zhang realonly = PETSC_FALSE; 1020d4002b98SHong Zhang break; 1021d4002b98SHong Zhang } 1022d4002b98SHong Zhang } 1023d4002b98SHong Zhang #endif 1024d4002b98SHong Zhang 1025d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1026d4002b98SHong Zhang for (i=0; i<m; i++) { 1027d4002b98SHong Zhang jcnt = 0; 1028d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1029d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1030d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1031d4002b98SHong Zhang value = a->val[cnt++]; 1032d4002b98SHong Zhang jcnt++; 1033d4002b98SHong Zhang } else { 1034d4002b98SHong Zhang value = 0.0; 1035d4002b98SHong Zhang } 1036d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1037d4002b98SHong Zhang if (realonly) { 1038d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr); 1039d4002b98SHong Zhang } else { 1040d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr); 1041d4002b98SHong Zhang } 1042d4002b98SHong Zhang #else 1043d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr); 1044d4002b98SHong Zhang #endif 1045d4002b98SHong Zhang } 1046d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1047d4002b98SHong Zhang } 1048d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1049d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1050d4002b98SHong Zhang PetscInt fshift=1; 1051d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1052d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1053d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr); 1054d4002b98SHong Zhang #else 1055d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr); 1056d4002b98SHong Zhang #endif 1057d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr); 1058d4002b98SHong Zhang for (i=0; i<m; i++) { 1059d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1060d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1061d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1062d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1063d4002b98SHong Zhang #else 1064d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1065d4002b98SHong Zhang #endif 1066d4002b98SHong Zhang } 1067d4002b98SHong Zhang } 1068d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1069d4002b98SHong Zhang } else { 1070d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1071d4002b98SHong Zhang if (A->factortype) { 1072d4002b98SHong Zhang for (i=0; i<m; i++) { 1073d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1074d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1075d4002b98SHong Zhang /* L part */ 1076d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1077d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1078d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1079d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1080d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1081d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1082d4002b98SHong Zhang } else { 1083d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1084d4002b98SHong Zhang } 1085d4002b98SHong Zhang #else 1086d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1087d4002b98SHong Zhang #endif 1088d4002b98SHong Zhang } 1089d4002b98SHong Zhang /* diagonal */ 1090d4002b98SHong Zhang j = a->diag[i]; 1091d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1092d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1093d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr); 1094d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1095d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr); 1096d4002b98SHong Zhang } else { 1097d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr); 1098d4002b98SHong Zhang } 1099d4002b98SHong Zhang #else 1100d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr); 1101d4002b98SHong Zhang #endif 1102d4002b98SHong Zhang 1103d4002b98SHong Zhang /* U part */ 1104d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1105d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1106d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1107d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1108d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1109d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1110d4002b98SHong Zhang } else { 1111d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1112d4002b98SHong Zhang } 1113d4002b98SHong Zhang #else 1114d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1115d4002b98SHong Zhang #endif 1116d4002b98SHong Zhang } 1117d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1118d4002b98SHong Zhang } 1119d4002b98SHong Zhang } else { 1120d4002b98SHong Zhang for (i=0; i<m; i++) { 1121d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1122d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1123d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1124d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1125d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1126d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1127d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1128d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1129d4002b98SHong Zhang } else { 1130d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1131d4002b98SHong Zhang } 1132d4002b98SHong Zhang #else 1133d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr); 1134d4002b98SHong Zhang #endif 1135d4002b98SHong Zhang } 1136d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1137d4002b98SHong Zhang } 1138d4002b98SHong Zhang } 1139d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1140d4002b98SHong Zhang } 1141d4002b98SHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1142d4002b98SHong Zhang PetscFunctionReturn(0); 1143d4002b98SHong Zhang } 1144d4002b98SHong Zhang 1145d4002b98SHong Zhang #include <petscdraw.h> 1146d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1147d4002b98SHong Zhang { 1148d4002b98SHong Zhang Mat A=(Mat)Aa; 1149d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1150d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1151d4002b98SHong Zhang int color; 1152d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1153d4002b98SHong Zhang PetscViewer viewer; 1154d4002b98SHong Zhang PetscViewerFormat format; 1155d4002b98SHong Zhang PetscErrorCode ierr; 1156d4002b98SHong Zhang 1157d4002b98SHong Zhang PetscFunctionBegin; 1158d4002b98SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1159d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1160d4002b98SHong Zhang ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1161d4002b98SHong Zhang 1162d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1163d4002b98SHong Zhang 1164d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1165d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1166d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1167d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1168d4002b98SHong Zhang for (i=0; i<m; i++) { 1169d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1170d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1171d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1172d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1173d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1174d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1175d4002b98SHong Zhang } 1176d4002b98SHong Zhang } 1177d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1178d4002b98SHong Zhang for (i=0; i<m; i++) { 1179d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1180d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1181d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1182d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1183d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1184d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1185d4002b98SHong Zhang } 1186d4002b98SHong Zhang } 1187d4002b98SHong Zhang color = PETSC_DRAW_RED; 1188d4002b98SHong Zhang for (i=0; i<m; i++) { 1189d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1190d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1191d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1192d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1193d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1194d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1195d4002b98SHong Zhang } 1196d4002b98SHong Zhang } 1197d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1198d4002b98SHong Zhang } else { 1199d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1200d4002b98SHong Zhang /* first determine max of all nonzero values */ 1201d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1202d4002b98SHong Zhang PetscInt count=0; 1203d4002b98SHong Zhang PetscDraw popup; 1204d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1205d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1206d4002b98SHong Zhang } 1207d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1208d4002b98SHong Zhang ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1209d4002b98SHong Zhang ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1210d4002b98SHong Zhang 1211d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1212d4002b98SHong Zhang for (i=0; i<m; i++) { 1213d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1214d4002b98SHong Zhang y_l = m - i - 1.0; 1215d4002b98SHong Zhang y_r = y_l + 1.0; 1216d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1217d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1218d4002b98SHong Zhang x_r = x_l + 1.0; 1219d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1220d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1221d4002b98SHong Zhang count++; 1222d4002b98SHong Zhang } 1223d4002b98SHong Zhang } 1224d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1225d4002b98SHong Zhang } 1226d4002b98SHong Zhang PetscFunctionReturn(0); 1227d4002b98SHong Zhang } 1228d4002b98SHong Zhang 1229d4002b98SHong Zhang #include <petscdraw.h> 1230d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1231d4002b98SHong Zhang { 1232d4002b98SHong Zhang PetscDraw draw; 1233d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1234d4002b98SHong Zhang PetscBool isnull; 1235d4002b98SHong Zhang PetscErrorCode ierr; 1236d4002b98SHong Zhang 1237d4002b98SHong Zhang PetscFunctionBegin; 1238d4002b98SHong Zhang ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1239d4002b98SHong Zhang ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1240d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1241d4002b98SHong Zhang 1242d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1243d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1244d4002b98SHong Zhang ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1245d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1246d4002b98SHong Zhang ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr); 1247d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1248d4002b98SHong Zhang ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1249d4002b98SHong Zhang PetscFunctionReturn(0); 1250d4002b98SHong Zhang } 1251d4002b98SHong Zhang 1252d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1253d4002b98SHong Zhang { 1254d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1255d4002b98SHong Zhang PetscErrorCode ierr; 1256d4002b98SHong Zhang 1257d4002b98SHong Zhang PetscFunctionBegin; 1258d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1259d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1260d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1261d4002b98SHong Zhang if (iascii) { 1262d4002b98SHong Zhang ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr); 1263d4002b98SHong Zhang } else if (isbinary) { 1264d4002b98SHong Zhang /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */ 1265d4002b98SHong Zhang } else if (isdraw) { 1266d4002b98SHong Zhang ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr); 1267d4002b98SHong Zhang } 1268d4002b98SHong Zhang PetscFunctionReturn(0); 1269d4002b98SHong Zhang } 1270d4002b98SHong Zhang 1271d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1272d4002b98SHong Zhang { 1273d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1274d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1275d4002b98SHong Zhang MatScalar *vp; 1276d4002b98SHong Zhang PetscErrorCode ierr; 1277d4002b98SHong Zhang 1278d4002b98SHong Zhang PetscFunctionBegin; 1279d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1280d4002b98SHong Zhang /* To do: compress out the unused elements */ 1281d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 1282d4002b98SHong Zhang ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr); 1283d4002b98SHong Zhang ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr); 1284d4002b98SHong Zhang ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr); 1285d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1286d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1287d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1288d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1289d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1290d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1291d4002b98SHong Zhang row = 8*i + row_in_slice; 1292d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1293d4002b98SHong Zhang /* 1294d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1295d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1296d4002b98SHong Zhang */ 1297d4002b98SHong Zhang lastcol = 0; 1298d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1299d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1300d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1301d4002b98SHong Zhang for (j=1;j<8;j++) { 1302d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1303d4002b98SHong Zhang lastcol = cp[j]; 1304d4002b98SHong Zhang break; 1305d4002b98SHong Zhang } 1306d4002b98SHong Zhang } 1307d4002b98SHong Zhang } else { 1308d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1309d4002b98SHong Zhang } 1310d4002b98SHong Zhang 1311d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1312d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1313d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1314d4002b98SHong Zhang } 1315d4002b98SHong Zhang } 1316d4002b98SHong Zhang } 1317d4002b98SHong Zhang 1318d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1319d4002b98SHong Zhang a->reallocs = 0; 1320d4002b98SHong Zhang 1321d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1322d4002b98SHong Zhang PetscFunctionReturn(0); 1323d4002b98SHong Zhang } 1324d4002b98SHong Zhang 1325d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1326d4002b98SHong Zhang { 1327d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1328d4002b98SHong Zhang 1329d4002b98SHong Zhang PetscFunctionBegin; 1330d4002b98SHong Zhang info->block_size = 1.0; 1331d4002b98SHong Zhang info->nz_allocated = (double)a->maxallocmat; 1332d4002b98SHong Zhang info->nz_used = (double)a->sliidx[a->totalslices]; /* include padding zeros */ 1333d4002b98SHong Zhang info->nz_unneeded = (double)(a->maxallocmat-a->sliidx[a->totalslices]); 1334d4002b98SHong Zhang info->assemblies = (double)A->num_ass; 1335d4002b98SHong Zhang info->mallocs = (double)A->info.mallocs; 1336d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1337d4002b98SHong Zhang if (A->factortype) { 1338d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1339d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1340d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1341d4002b98SHong Zhang } else { 1342d4002b98SHong Zhang info->fill_ratio_given = 0; 1343d4002b98SHong Zhang info->fill_ratio_needed = 0; 1344d4002b98SHong Zhang info->factor_mallocs = 0; 1345d4002b98SHong Zhang } 1346d4002b98SHong Zhang PetscFunctionReturn(0); 1347d4002b98SHong Zhang } 1348d4002b98SHong Zhang 1349d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1350d4002b98SHong Zhang { 1351d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1352d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1353d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1354d4002b98SHong Zhang MatScalar *vp,value; 1355d4002b98SHong Zhang PetscErrorCode ierr; 1356d4002b98SHong Zhang 1357d4002b98SHong Zhang PetscFunctionBegin; 1358d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1359d4002b98SHong Zhang row = im[k]; 1360d4002b98SHong Zhang if (row < 0) continue; 1361d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1362d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 1363d4002b98SHong Zhang #endif 1364d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1365d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1366d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1367d4002b98SHong Zhang nrow = a->rlen[row]; 1368d4002b98SHong Zhang low = 0; 1369d4002b98SHong Zhang high = nrow; 1370d4002b98SHong Zhang 1371d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1372d4002b98SHong Zhang col = in[l]; 1373d4002b98SHong Zhang if (col<0) continue; 1374d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1375d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1); 1376d4002b98SHong Zhang #endif 1377d4002b98SHong Zhang if (a->roworiented) { 1378d4002b98SHong Zhang value = v[l+k*n]; 1379d4002b98SHong Zhang } else { 1380d4002b98SHong Zhang value = v[k+l*m]; 1381d4002b98SHong Zhang } 1382d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1383d4002b98SHong Zhang 1384d4002b98SHong Zhang /* search in this row for the specified colmun, i indicates the column to be set */ 1385d4002b98SHong Zhang if (col <= lastcol) low = 0; 1386d4002b98SHong Zhang else high = nrow; 1387d4002b98SHong Zhang lastcol = col; 1388d4002b98SHong Zhang while (high-low > 5) { 1389d4002b98SHong Zhang t = (low+high)/2; 1390d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1391d4002b98SHong Zhang else low = t; 1392d4002b98SHong Zhang } 1393d4002b98SHong Zhang for (i=low; i<high; i++) { 1394d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1395d4002b98SHong Zhang if (*(cp+i*8) == col) { 1396d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1397d4002b98SHong Zhang else *(vp+i*8) = value; 1398d4002b98SHong Zhang low = i + 1; 1399d4002b98SHong Zhang goto noinsert; 1400d4002b98SHong Zhang } 1401d4002b98SHong Zhang } 1402d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1403d4002b98SHong Zhang if (nonew == 1) goto noinsert; 1404d4002b98SHong Zhang if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1405d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1406d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1407d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1408d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1409d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1410d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1411d4002b98SHong Zhang } 1412d4002b98SHong Zhang a->rlen[row]++; 1413d4002b98SHong Zhang *(cp+i*8) = col; 1414d4002b98SHong Zhang *(vp+i*8) = value; 1415d4002b98SHong Zhang a->nz++; 1416d4002b98SHong Zhang A->nonzerostate++; 1417d4002b98SHong Zhang low = i+1; high++; nrow++; 1418d4002b98SHong Zhang noinsert:; 1419d4002b98SHong Zhang } 1420d4002b98SHong Zhang a->rlen[row] = nrow; 1421d4002b98SHong Zhang } 1422d4002b98SHong Zhang PetscFunctionReturn(0); 1423d4002b98SHong Zhang } 1424d4002b98SHong Zhang 1425d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1426d4002b98SHong Zhang { 1427d4002b98SHong Zhang PetscErrorCode ierr; 1428d4002b98SHong Zhang 1429d4002b98SHong Zhang PetscFunctionBegin; 1430d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1431d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1432d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1433d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1434d4002b98SHong Zhang 1435d4002b98SHong Zhang if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1436d4002b98SHong Zhang ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1437d4002b98SHong Zhang } else { 1438d4002b98SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1439d4002b98SHong Zhang } 1440d4002b98SHong Zhang PetscFunctionReturn(0); 1441d4002b98SHong Zhang } 1442d4002b98SHong Zhang 1443d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1444d4002b98SHong Zhang { 1445d4002b98SHong Zhang PetscErrorCode ierr; 1446d4002b98SHong Zhang 1447d4002b98SHong Zhang PetscFunctionBegin; 1448d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr); 1449d4002b98SHong Zhang PetscFunctionReturn(0); 1450d4002b98SHong Zhang } 1451d4002b98SHong Zhang 1452d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1453d4002b98SHong Zhang { 1454d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1455d4002b98SHong Zhang 1456d4002b98SHong Zhang PetscFunctionBegin; 1457d4002b98SHong Zhang *array = a->val; 1458d4002b98SHong Zhang PetscFunctionReturn(0); 1459d4002b98SHong Zhang } 1460d4002b98SHong Zhang 1461d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1462d4002b98SHong Zhang { 1463d4002b98SHong Zhang PetscFunctionBegin; 1464d4002b98SHong Zhang PetscFunctionReturn(0); 1465d4002b98SHong Zhang } 1466d4002b98SHong Zhang 1467d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1468d4002b98SHong Zhang { 1469d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1470d4002b98SHong Zhang PetscInt i; 1471d4002b98SHong Zhang MatScalar *aval=a->val; 1472d4002b98SHong Zhang 1473d4002b98SHong Zhang PetscFunctionBegin; 1474d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1475d4002b98SHong Zhang PetscFunctionReturn(0); 1476d4002b98SHong Zhang } 1477d4002b98SHong Zhang 1478d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1479d4002b98SHong Zhang { 1480d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1481d4002b98SHong Zhang PetscInt i; 1482d4002b98SHong Zhang MatScalar *aval=a->val; 1483d4002b98SHong Zhang PetscErrorCode ierr; 1484d4002b98SHong Zhang 1485d4002b98SHong Zhang PetscFunctionBegin; 1486d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1487d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1488d4002b98SHong Zhang PetscFunctionReturn(0); 1489d4002b98SHong Zhang } 1490d4002b98SHong Zhang 1491d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1492d4002b98SHong Zhang { 1493d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1494d4002b98SHong Zhang MatScalar *aval=a->val; 1495d4002b98SHong Zhang PetscScalar oalpha=alpha; 1496d4002b98SHong Zhang PetscBLASInt one=1,size; 1497d4002b98SHong Zhang PetscErrorCode ierr; 1498d4002b98SHong Zhang 1499d4002b98SHong Zhang PetscFunctionBegin; 1500d4002b98SHong Zhang ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr); 1501d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1502d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1503d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr); 1504d4002b98SHong Zhang PetscFunctionReturn(0); 1505d4002b98SHong Zhang } 1506d4002b98SHong Zhang 1507d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1508d4002b98SHong Zhang { 1509d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1510d4002b98SHong Zhang PetscErrorCode ierr; 1511d4002b98SHong Zhang 1512d4002b98SHong Zhang PetscFunctionBegin; 1513d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1514d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr); 1515d4002b98SHong Zhang } 1516d4002b98SHong Zhang ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1517d4002b98SHong Zhang PetscFunctionReturn(0); 1518d4002b98SHong Zhang } 1519d4002b98SHong Zhang 1520d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1521d4002b98SHong Zhang { 1522d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1523d4002b98SHong Zhang PetscScalar *x,sum,*t; 1524d4002b98SHong Zhang const MatScalar *idiag=0,*mdiag; 1525d4002b98SHong Zhang const PetscScalar *b,*xb; 1526d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1527d4002b98SHong Zhang const PetscInt *diag; 1528d4002b98SHong Zhang PetscErrorCode ierr; 1529d4002b98SHong Zhang 1530d4002b98SHong Zhang PetscFunctionBegin; 1531d4002b98SHong Zhang its = its*lits; 1532d4002b98SHong Zhang 1533d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1534d4002b98SHong Zhang if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);} 1535d4002b98SHong Zhang a->fshift = fshift; 1536d4002b98SHong Zhang a->omega = omega; 1537d4002b98SHong Zhang 1538d4002b98SHong Zhang diag = a->diag; 1539d4002b98SHong Zhang t = a->ssor_work; 1540d4002b98SHong Zhang idiag = a->idiag; 1541d4002b98SHong Zhang mdiag = a->mdiag; 1542d4002b98SHong Zhang 1543d4002b98SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1544d4002b98SHong Zhang ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1545d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 1546d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 1547d4002b98SHong Zhang if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1548d4002b98SHong Zhang if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1549d4002b98SHong Zhang 1550d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1551d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1552d4002b98SHong Zhang for (i=0; i<m; i++) { 1553d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1554d4002b98SHong Zhang sum = b[i]; 1555d4002b98SHong Zhang n = (diag[i]-shift)/8; 1556d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1557d4002b98SHong Zhang t[i] = sum; 1558d4002b98SHong Zhang x[i] = sum*idiag[i]; 1559d4002b98SHong Zhang } 1560d4002b98SHong Zhang xb = t; 1561d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1562d4002b98SHong Zhang } else xb = b; 1563d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1564d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1565d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1566d4002b98SHong Zhang sum = xb[i]; 1567d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1568d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1569d4002b98SHong Zhang if (xb == b) { 1570d4002b98SHong Zhang x[i] = sum*idiag[i]; 1571d4002b98SHong Zhang } else { 1572d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1573d4002b98SHong Zhang } 1574d4002b98SHong Zhang } 1575d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1576d4002b98SHong Zhang } 1577d4002b98SHong Zhang its--; 1578d4002b98SHong Zhang } 1579d4002b98SHong Zhang while (its--) { 1580d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1581d4002b98SHong Zhang for (i=0; i<m; i++) { 1582d4002b98SHong Zhang /* lower */ 1583d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1584d4002b98SHong Zhang sum = b[i]; 1585d4002b98SHong Zhang n = (diag[i]-shift)/8; 1586d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1587d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1588d4002b98SHong Zhang /* upper */ 1589d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1590d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1591d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1592d4002b98SHong Zhang } 1593d4002b98SHong Zhang xb = t; 1594d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1595d4002b98SHong Zhang } else xb = b; 1596d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1597d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1598d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1599d4002b98SHong Zhang sum = xb[i]; 1600d4002b98SHong Zhang if (xb == b) { 1601d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1602d4002b98SHong Zhang n = a->rlen[i]; 1603d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1604d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1605d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1606d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1607d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1608d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1609d4002b98SHong Zhang } 1610d4002b98SHong Zhang } 1611d4002b98SHong Zhang if (xb == b) { 1612d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1613d4002b98SHong Zhang } else { 1614d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1615d4002b98SHong Zhang } 1616d4002b98SHong Zhang } 1617d4002b98SHong Zhang } 1618d4002b98SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1619d4002b98SHong Zhang ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 1620d4002b98SHong Zhang PetscFunctionReturn(0); 1621d4002b98SHong Zhang } 1622d4002b98SHong Zhang 1623d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1624d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 1625d4002b98SHong Zhang 0, 1626d4002b98SHong Zhang 0, 1627d4002b98SHong Zhang MatMult_SeqSELL, 1628d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1629d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1630d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1631d4002b98SHong Zhang 0, 1632d4002b98SHong Zhang 0, 1633d4002b98SHong Zhang 0, 1634d4002b98SHong Zhang /* 10*/ 0, 1635d4002b98SHong Zhang 0, 1636d4002b98SHong Zhang 0, 1637d4002b98SHong Zhang MatSOR_SeqSELL, 1638d4002b98SHong Zhang 0, 1639d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1640d4002b98SHong Zhang MatEqual_SeqSELL, 1641d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1642d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1643d4002b98SHong Zhang 0, 1644d4002b98SHong Zhang /* 20*/ 0, 1645d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1646d4002b98SHong Zhang MatSetOption_SeqSELL, 1647d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1648d4002b98SHong Zhang /* 24*/ 0, 1649d4002b98SHong Zhang 0, 1650d4002b98SHong Zhang 0, 1651d4002b98SHong Zhang 0, 1652d4002b98SHong Zhang 0, 1653d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1654d4002b98SHong Zhang 0, 1655d4002b98SHong Zhang 0, 1656d4002b98SHong Zhang 0, 1657d4002b98SHong Zhang 0, 1658d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1659d4002b98SHong Zhang 0, 1660d4002b98SHong Zhang 0, 1661d4002b98SHong Zhang 0, 1662d4002b98SHong Zhang 0, 1663d4002b98SHong Zhang /* 39*/ 0, 1664d4002b98SHong Zhang 0, 1665d4002b98SHong Zhang 0, 1666d4002b98SHong Zhang MatGetValues_SeqSELL, 1667d4002b98SHong Zhang MatCopy_SeqSELL, 1668d4002b98SHong Zhang /* 44*/ 0, 1669d4002b98SHong Zhang MatScale_SeqSELL, 1670d4002b98SHong Zhang MatShift_SeqSELL, 1671d4002b98SHong Zhang 0, 1672d4002b98SHong Zhang 0, 1673d4002b98SHong Zhang /* 49*/ 0, 1674d4002b98SHong Zhang 0, 1675d4002b98SHong Zhang 0, 1676d4002b98SHong Zhang 0, 1677d4002b98SHong Zhang 0, 1678d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1679d4002b98SHong Zhang 0, 1680d4002b98SHong Zhang 0, 1681d4002b98SHong Zhang 0, 1682d4002b98SHong Zhang 0, 1683d4002b98SHong Zhang /* 59*/ 0, 1684d4002b98SHong Zhang MatDestroy_SeqSELL, 1685d4002b98SHong Zhang MatView_SeqSELL, 1686d4002b98SHong Zhang 0, 1687d4002b98SHong Zhang 0, 1688d4002b98SHong Zhang /* 64*/ 0, 1689d4002b98SHong Zhang 0, 1690d4002b98SHong Zhang 0, 1691d4002b98SHong Zhang 0, 1692d4002b98SHong Zhang 0, 1693d4002b98SHong Zhang /* 69*/ 0, 1694d4002b98SHong Zhang 0, 1695d4002b98SHong Zhang 0, 1696d4002b98SHong Zhang 0, 1697d4002b98SHong Zhang 0, 1698d4002b98SHong Zhang /* 74*/ 0, 1699d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1700d4002b98SHong Zhang 0, 1701d4002b98SHong Zhang 0, 1702d4002b98SHong Zhang 0, 1703d4002b98SHong Zhang /* 79*/ 0, 1704d4002b98SHong Zhang 0, 1705d4002b98SHong Zhang 0, 1706d4002b98SHong Zhang 0, 1707d4002b98SHong Zhang 0, 1708d4002b98SHong Zhang /* 84*/ 0, 1709d4002b98SHong Zhang 0, 1710d4002b98SHong Zhang 0, 1711d4002b98SHong Zhang 0, 1712d4002b98SHong Zhang 0, 1713d4002b98SHong Zhang /* 89*/ 0, 1714d4002b98SHong Zhang 0, 1715d4002b98SHong Zhang 0, 1716d4002b98SHong Zhang 0, 1717d4002b98SHong Zhang 0, 1718d4002b98SHong Zhang /* 94*/ 0, 1719d4002b98SHong Zhang 0, 1720d4002b98SHong Zhang 0, 1721d4002b98SHong Zhang 0, 1722d4002b98SHong Zhang 0, 1723d4002b98SHong Zhang /* 99*/ 0, 1724d4002b98SHong Zhang 0, 1725d4002b98SHong Zhang 0, 1726d4002b98SHong Zhang MatConjugate_SeqSELL, 1727d4002b98SHong Zhang 0, 1728d4002b98SHong Zhang /*104*/ 0, 1729d4002b98SHong Zhang 0, 1730d4002b98SHong Zhang 0, 1731d4002b98SHong Zhang 0, 1732d4002b98SHong Zhang 0, 1733d4002b98SHong Zhang /*109*/ 0, 1734d4002b98SHong Zhang 0, 1735d4002b98SHong Zhang 0, 1736d4002b98SHong Zhang 0, 1737d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1738d4002b98SHong Zhang /*114*/ 0, 1739d4002b98SHong Zhang 0, 1740d4002b98SHong Zhang 0, 1741d4002b98SHong Zhang 0, 1742d4002b98SHong Zhang 0, 1743d4002b98SHong Zhang /*119*/ 0, 1744d4002b98SHong Zhang 0, 1745d4002b98SHong Zhang 0, 1746d4002b98SHong Zhang 0, 1747d4002b98SHong Zhang 0, 1748d4002b98SHong Zhang /*124*/ 0, 1749d4002b98SHong Zhang 0, 1750d4002b98SHong Zhang 0, 1751d4002b98SHong Zhang 0, 1752d4002b98SHong Zhang 0, 1753d4002b98SHong Zhang /*129*/ 0, 1754d4002b98SHong Zhang 0, 1755d4002b98SHong Zhang 0, 1756d4002b98SHong Zhang 0, 1757d4002b98SHong Zhang 0, 1758d4002b98SHong Zhang /*134*/ 0, 1759d4002b98SHong Zhang 0, 1760d4002b98SHong Zhang 0, 1761d4002b98SHong Zhang 0, 1762d4002b98SHong Zhang 0, 1763d4002b98SHong Zhang /*139*/ 0, 1764d4002b98SHong Zhang 0, 1765d4002b98SHong Zhang 0, 1766d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1767d4002b98SHong Zhang 0, 1768d4002b98SHong Zhang /*144*/0 1769d4002b98SHong Zhang }; 1770d4002b98SHong Zhang 1771d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1772d4002b98SHong Zhang { 1773d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1774d4002b98SHong Zhang PetscErrorCode ierr; 1775d4002b98SHong Zhang 1776d4002b98SHong Zhang PetscFunctionBegin; 1777d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1778d4002b98SHong Zhang 1779d4002b98SHong Zhang /* allocate space for values if not already there */ 1780d4002b98SHong Zhang if (!a->saved_values) { 1781d4002b98SHong Zhang ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr); 1782d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr); 1783d4002b98SHong Zhang } 1784d4002b98SHong Zhang 1785d4002b98SHong Zhang /* copy values over */ 1786d4002b98SHong Zhang ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1787d4002b98SHong Zhang PetscFunctionReturn(0); 1788d4002b98SHong Zhang } 1789d4002b98SHong Zhang 1790d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1791d4002b98SHong Zhang { 1792d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1793d4002b98SHong Zhang PetscErrorCode ierr; 1794d4002b98SHong Zhang 1795d4002b98SHong Zhang PetscFunctionBegin; 1796d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1797d4002b98SHong Zhang if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1798d4002b98SHong Zhang /* copy values over */ 1799d4002b98SHong Zhang ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1800d4002b98SHong Zhang PetscFunctionReturn(0); 1801d4002b98SHong Zhang } 1802d4002b98SHong Zhang 1803d4002b98SHong Zhang /*@C 1804d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1805d4002b98SHong Zhang 1806d4002b98SHong Zhang Not Collective 1807d4002b98SHong Zhang 1808d4002b98SHong Zhang Input Parameters: 1809d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1810d4002b98SHong Zhang . array - pointer to the data 1811d4002b98SHong Zhang 1812d4002b98SHong Zhang Level: intermediate 1813d4002b98SHong Zhang 1814d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1815d4002b98SHong Zhang @*/ 1816d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1817d4002b98SHong Zhang { 1818d4002b98SHong Zhang PetscErrorCode ierr; 1819d4002b98SHong Zhang 1820d4002b98SHong Zhang PetscFunctionBegin; 1821d4002b98SHong Zhang ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 1822d4002b98SHong Zhang PetscFunctionReturn(0); 1823d4002b98SHong Zhang } 1824d4002b98SHong Zhang 1825d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1826d4002b98SHong Zhang { 1827d4002b98SHong Zhang Mat_SeqSELL *b; 1828d4002b98SHong Zhang PetscMPIInt size; 1829d4002b98SHong Zhang PetscErrorCode ierr; 1830d4002b98SHong Zhang 1831d4002b98SHong Zhang PetscFunctionBegin; 1832d4002b98SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1833d4002b98SHong Zhang if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1834d4002b98SHong Zhang 1835d4002b98SHong Zhang ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1836d4002b98SHong Zhang 1837d4002b98SHong Zhang B->data = (void*)b; 1838d4002b98SHong Zhang 1839d4002b98SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1840d4002b98SHong Zhang 1841d4002b98SHong Zhang b->row = 0; 1842d4002b98SHong Zhang b->col = 0; 1843d4002b98SHong Zhang b->icol = 0; 1844d4002b98SHong Zhang b->reallocs = 0; 1845d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1846d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1847d4002b98SHong Zhang b->nonew = 0; 1848d4002b98SHong Zhang b->diag = 0; 1849d4002b98SHong Zhang b->solve_work = 0; 1850d4002b98SHong Zhang B->spptr = 0; 1851d4002b98SHong Zhang b->saved_values = 0; 1852d4002b98SHong Zhang b->idiag = 0; 1853d4002b98SHong Zhang b->mdiag = 0; 1854d4002b98SHong Zhang b->ssor_work = 0; 1855d4002b98SHong Zhang b->omega = 1.0; 1856d4002b98SHong Zhang b->fshift = 0.0; 1857d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1858d4002b98SHong Zhang b->ibdiagvalid = PETSC_FALSE; 1859d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1860d4002b98SHong Zhang 1861d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr); 1862d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr); 1863d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr); 1864d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr); 1865d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr); 1866d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr); 1867d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr); 1868d4002b98SHong Zhang PetscFunctionReturn(0); 1869d4002b98SHong Zhang } 1870d4002b98SHong Zhang 1871d4002b98SHong Zhang /* 1872d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1873d4002b98SHong Zhang */ 1874d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1875d4002b98SHong Zhang { 1876d4002b98SHong Zhang Mat_SeqSELL *c,*a=(Mat_SeqSELL*)A->data; 1877d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1878d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1879d4002b98SHong Zhang PetscErrorCode ierr; 1880d4002b98SHong Zhang 1881d4002b98SHong Zhang PetscFunctionBegin; 1882d4002b98SHong Zhang c = (Mat_SeqSELL*)C->data; 1883d4002b98SHong Zhang 1884d4002b98SHong Zhang C->factortype = A->factortype; 1885d4002b98SHong Zhang c->row = 0; 1886d4002b98SHong Zhang c->col = 0; 1887d4002b98SHong Zhang c->icol = 0; 1888d4002b98SHong Zhang c->reallocs = 0; 1889d4002b98SHong Zhang 1890d4002b98SHong Zhang C->assembled = PETSC_TRUE; 1891d4002b98SHong Zhang 1892d4002b98SHong Zhang ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 1893d4002b98SHong Zhang ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 1894d4002b98SHong Zhang 1895d4002b98SHong Zhang ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr); 1896d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 1897d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr); 1898d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 1899d4002b98SHong Zhang 1900d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 1901d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 1902d4002b98SHong Zhang 1903d4002b98SHong Zhang /* allocate the matrix space */ 1904d4002b98SHong Zhang if (mallocmatspace) { 1905d4002b98SHong Zhang ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr); 1906d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 1907d4002b98SHong Zhang 1908d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 1909d4002b98SHong Zhang 1910d4002b98SHong Zhang if (m > 0) { 1911d4002b98SHong Zhang ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr); 1912d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 1913d4002b98SHong Zhang ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 1914d4002b98SHong Zhang } else { 1915d4002b98SHong Zhang ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 1916d4002b98SHong Zhang } 1917d4002b98SHong Zhang } 1918d4002b98SHong Zhang } 1919d4002b98SHong Zhang 1920d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 1921d4002b98SHong Zhang c->roworiented = a->roworiented; 1922d4002b98SHong Zhang c->nonew = a->nonew; 1923d4002b98SHong Zhang if (a->diag) { 1924d4002b98SHong Zhang ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr); 1925d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 1926d4002b98SHong Zhang for (i=0; i<m; i++) { 1927d4002b98SHong Zhang c->diag[i] = a->diag[i]; 1928d4002b98SHong Zhang } 1929d4002b98SHong Zhang } else c->diag = 0; 1930d4002b98SHong Zhang 1931d4002b98SHong Zhang c->solve_work = 0; 1932d4002b98SHong Zhang c->saved_values = 0; 1933d4002b98SHong Zhang c->idiag = 0; 1934d4002b98SHong Zhang c->ssor_work = 0; 1935d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 1936d4002b98SHong Zhang c->free_val = PETSC_TRUE; 1937d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 1938d4002b98SHong Zhang 1939d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 1940d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 1941d4002b98SHong Zhang c->rlenmax = a->rlenmax; 1942d4002b98SHong Zhang c->nz = a->nz; 1943d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 1944d4002b98SHong Zhang 1945d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 1946d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 1947d4002b98SHong Zhang 1948d4002b98SHong Zhang ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 1949d4002b98SHong Zhang PetscFunctionReturn(0); 1950d4002b98SHong Zhang } 1951d4002b98SHong Zhang 1952d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 1953d4002b98SHong Zhang { 1954d4002b98SHong Zhang PetscErrorCode ierr; 1955d4002b98SHong Zhang 1956d4002b98SHong Zhang PetscFunctionBegin; 1957d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 1958d4002b98SHong Zhang ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1959d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 1960d4002b98SHong Zhang ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr); 1961d4002b98SHong Zhang } 1962d4002b98SHong Zhang ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1963d4002b98SHong Zhang ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 1964d4002b98SHong Zhang PetscFunctionReturn(0); 1965d4002b98SHong Zhang } 1966d4002b98SHong Zhang 1967d4002b98SHong Zhang /*@C 1968d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 1969d4002b98SHong Zhang 1970d4002b98SHong Zhang Collective on MPI_Comm 1971d4002b98SHong Zhang 1972d4002b98SHong Zhang Input Parameters: 1973d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 1974d4002b98SHong Zhang . m - number of rows 1975d4002b98SHong Zhang . n - number of columns 1976d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 1977d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 1978d4002b98SHong Zhang (possibly different for each row) or NULL 1979d4002b98SHong Zhang 1980d4002b98SHong Zhang Output Parameter: 1981d4002b98SHong Zhang . A - the matrix 1982d4002b98SHong Zhang 1983d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1984d4002b98SHong Zhang MatXXXXSetPreallocation() paradgm instead of this routine directly. 1985d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 1986d4002b98SHong Zhang 1987d4002b98SHong Zhang Notes: 1988d4002b98SHong Zhang If nnz is given then nz is ignored 1989d4002b98SHong Zhang 1990d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 1991d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 1992d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 1993d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 1994d4002b98SHong Zhang 1995d4002b98SHong Zhang Level: intermediate 1996d4002b98SHong Zhang 1997d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays() 1998d4002b98SHong Zhang 1999d4002b98SHong Zhang @*/ 2000d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2001d4002b98SHong Zhang { 2002d4002b98SHong Zhang PetscErrorCode ierr; 2003d4002b98SHong Zhang 2004d4002b98SHong Zhang PetscFunctionBegin; 2005d4002b98SHong Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 2006d4002b98SHong Zhang ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2007d4002b98SHong Zhang ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr); 2008d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr); 2009d4002b98SHong Zhang PetscFunctionReturn(0); 2010d4002b98SHong Zhang } 2011d4002b98SHong Zhang 2012d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2013d4002b98SHong Zhang { 2014d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2015d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2016d4002b98SHong Zhang PetscErrorCode ierr; 2017d4002b98SHong Zhang 2018d4002b98SHong Zhang PetscFunctionBegin; 2019d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2020d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2021d4002b98SHong Zhang *flg = PETSC_FALSE; 2022d4002b98SHong Zhang PetscFunctionReturn(0); 2023d4002b98SHong Zhang } 2024d4002b98SHong Zhang /* if the a->colidx are the same */ 2025d4002b98SHong Zhang ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr); 2026d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2027d4002b98SHong Zhang /* if a->val are the same */ 2028d4002b98SHong Zhang ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr); 2029d4002b98SHong Zhang PetscFunctionReturn(0); 2030d4002b98SHong Zhang } 2031d4002b98SHong Zhang 2032d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2033d4002b98SHong Zhang { 2034d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2035d4002b98SHong Zhang 2036d4002b98SHong Zhang PetscFunctionBegin; 2037d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2038d4002b98SHong Zhang a->ibdiagvalid = PETSC_FALSE; 2039d4002b98SHong Zhang PetscFunctionReturn(0); 2040d4002b98SHong Zhang } 2041d4002b98SHong Zhang 2042d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2043d4002b98SHong Zhang { 2044d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2045d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2046d4002b98SHong Zhang PetscInt i; 2047d4002b98SHong Zhang PetscScalar *val = a->val; 2048d4002b98SHong Zhang 2049d4002b98SHong Zhang PetscFunctionBegin; 2050d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2051d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2052d4002b98SHong Zhang } 2053d4002b98SHong Zhang #else 2054d4002b98SHong Zhang PetscFunctionBegin; 2055d4002b98SHong Zhang #endif 2056d4002b98SHong Zhang PetscFunctionReturn(0); 2057d4002b98SHong Zhang } 2058