xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 7285fed1bca141d12bef6892cdaaa08da852c832)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h>  /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
8d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H)
9d4002b98SHong Zhang #include <immintrin.h>
10d4002b98SHong Zhang 
11d4002b98SHong Zhang #if !defined(_MM_SCALE_8)
12d4002b98SHong Zhang #define _MM_SCALE_8    8
13d4002b98SHong Zhang #endif
14d4002b98SHong Zhang 
15d4002b98SHong Zhang #if defined(__AVX512F__)
16d4002b98SHong Zhang /* these do not work
17d4002b98SHong Zhang  vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
18d4002b98SHong Zhang  vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
19d4002b98SHong Zhang */
20d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \
21d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
22d4002b98SHong Zhang vec_idx  = _mm256_load_si256((__m256i const*)acolidx); \
23d4002b98SHong Zhang vec_vals = _mm512_load_pd(aval); \
24d4002b98SHong Zhang vec_x    = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \
25d4002b98SHong Zhang vec_y    = _mm512_fmadd_pd(vec_x,vec_vals,vec_y);
26d4002b98SHong Zhang 
27d4002b98SHong Zhang #endif
28d4002b98SHong Zhang #endif  /* PETSC_HAVE_IMMINTRIN_H */
29d4002b98SHong Zhang 
30d4002b98SHong Zhang /*@C
31d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
32d4002b98SHong Zhang  the user should preallocate the matrix storage by setting the parameter nz
33d4002b98SHong Zhang  (or the array nnz).  By setting these parameters accurately, performance
34d4002b98SHong Zhang  during matrix assembly can be increased significantly.
35d4002b98SHong Zhang 
36d4002b98SHong Zhang  Collective on MPI_Comm
37d4002b98SHong Zhang 
38d4002b98SHong Zhang  Input Parameters:
39d4002b98SHong Zhang  +  B - The matrix
40d4002b98SHong Zhang  .  nz - number of nonzeros per row (same for all rows)
41d4002b98SHong Zhang  -  nnz - array containing the number of nonzeros in the various rows
42d4002b98SHong Zhang  (possibly different for each row) or NULL
43d4002b98SHong Zhang 
44d4002b98SHong Zhang  Notes:
45d4002b98SHong Zhang  If nnz is given then nz is ignored.
46d4002b98SHong Zhang 
47d4002b98SHong Zhang  Specify the preallocated storage with either nz or nnz (not both).
48d4002b98SHong Zhang  Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
49d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
50d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
51d4002b98SHong Zhang 
52d4002b98SHong Zhang  You can call MatGetInfo() to get information on how effective the preallocation was;
53d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
54d4002b98SHong Zhang  You can also run with the option -info and look for messages with the string
55d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
56d4002b98SHong Zhang 
57d4002b98SHong Zhang  Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix
58d4002b98SHong Zhang  entries or columns indices.
59d4002b98SHong Zhang 
60d4002b98SHong Zhang  The maximum number of nonzeos in any row should be as accuate as possible.
61d4002b98SHong Zhang  If it is underesitmated, you will get bad performance due to reallocation
62d4002b98SHong Zhang  (MatSeqXSELLReallocateSELL).
63d4002b98SHong Zhang 
64d4002b98SHong Zhang  Level: intermediate
65d4002b98SHong Zhang 
66d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo()
67d4002b98SHong Zhang 
68d4002b98SHong Zhang  @*/
69d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])
70d4002b98SHong Zhang {
71d4002b98SHong Zhang   PetscErrorCode ierr;
72d4002b98SHong Zhang 
73d4002b98SHong Zhang   PetscFunctionBegin;
74d4002b98SHong Zhang   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
75d4002b98SHong Zhang   PetscValidType(B,1);
76d4002b98SHong Zhang   ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr);
77d4002b98SHong Zhang   PetscFunctionReturn(0);
78d4002b98SHong Zhang }
79d4002b98SHong Zhang 
80d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])
81d4002b98SHong Zhang {
82d4002b98SHong Zhang   Mat_SeqSELL    *b;
83d4002b98SHong Zhang   PetscInt       i,j,totalslices;
84d4002b98SHong Zhang   PetscBool      skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE;
85d4002b98SHong Zhang   PetscErrorCode ierr;
86d4002b98SHong Zhang 
87d4002b98SHong Zhang   PetscFunctionBegin;
88d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
89d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
90d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
91d4002b98SHong Zhang     maxallocrow    = 0;
92d4002b98SHong Zhang   }
93d4002b98SHong Zhang 
94d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
95d4002b98SHong Zhang   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
96d4002b98SHong Zhang 
97d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
98d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
99d4002b98SHong Zhang   if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow);
100d4002b98SHong Zhang   if (rlen) {
101d4002b98SHong Zhang     for (i=0; i<B->rmap->n; i++) {
102d4002b98SHong Zhang       if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]);
103d4002b98SHong Zhang       if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n);
104d4002b98SHong Zhang     }
105d4002b98SHong Zhang   }
106d4002b98SHong Zhang 
107d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
108d4002b98SHong Zhang 
109d4002b98SHong Zhang   b = (Mat_SeqSELL*)B->data;
110d4002b98SHong Zhang 
111d4002b98SHong Zhang   totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */
112d4002b98SHong Zhang   b->totalslices = totalslices;
113d4002b98SHong Zhang   if (!skipallocation) {
114d4002b98SHong Zhang     if (B->rmap->n & 0x07) PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n);
115d4002b98SHong Zhang 
116d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
117d4002b98SHong Zhang       ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr);
118d4002b98SHong Zhang       ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
119d4002b98SHong Zhang     }
120d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
121d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
122d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
123d4002b98SHong Zhang       for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow;
124d4002b98SHong Zhang     } else {
125d4002b98SHong Zhang       maxallocrow = 0;
126d4002b98SHong Zhang       b->sliidx[0] = 0;
127d4002b98SHong Zhang       for (i=1; i<totalslices; i++) {
128d4002b98SHong Zhang         b->sliidx[i] = 0;
129d4002b98SHong Zhang         for (j=0;j<8;j++) {
130d4002b98SHong Zhang           b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]);
131d4002b98SHong Zhang         }
132d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i],maxallocrow);
133d4002b98SHong Zhang         b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i];
134d4002b98SHong Zhang       }
135d4002b98SHong Zhang       /* last slice */
136d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
137d4002b98SHong Zhang       for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]);
138d4002b98SHong Zhang       maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow);
139d4002b98SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices];
140d4002b98SHong Zhang     }
141d4002b98SHong Zhang 
142d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
143d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
144d4002b98SHong Zhang     ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr);
145d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
146d4002b98SHong Zhang     ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr);
147d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
148d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
149d4002b98SHong Zhang     ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr);
150d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr);
151d4002b98SHong Zhang 
152d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
153d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
154d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
155d4002b98SHong Zhang   } else {
156d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
157d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
158d4002b98SHong Zhang   }
159d4002b98SHong Zhang 
160d4002b98SHong Zhang   b->nz               = 0;
161d4002b98SHong Zhang   b->maxallocrow      = maxallocrow;
162d4002b98SHong Zhang   b->rlenmax          = maxallocrow;
163d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
164d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
165d4002b98SHong Zhang   if (realalloc) {
166d4002b98SHong Zhang     ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
167d4002b98SHong Zhang   }
168d4002b98SHong Zhang   PetscFunctionReturn(0);
169d4002b98SHong Zhang }
170d4002b98SHong Zhang 
171d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
172d4002b98SHong Zhang {
173d4002b98SHong Zhang   Mat            B;
174d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data;
175d4002b98SHong Zhang   PetscInt       i,j,row;
176d4002b98SHong Zhang   PetscBool      isnonzero;
177d4002b98SHong Zhang   PetscErrorCode ierr;
178d4002b98SHong Zhang 
179d4002b98SHong Zhang   PetscFunctionBegin;
180d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
181d4002b98SHong Zhang   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
182d4002b98SHong Zhang   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
183d4002b98SHong Zhang   ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr);
184d4002b98SHong Zhang   ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
185d4002b98SHong Zhang 
186d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
187d4002b98SHong Zhang     for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
188d4002b98SHong Zhang       isnonzero = (PetscBool)((j-a->sliidx[i])/8 < a->rlen[8*i+row]);
189d4002b98SHong Zhang       if (isnonzero) {
190d4002b98SHong Zhang         ierr = MatSetValue(B,8*i+row,a->colidx[j],a->val[j],INSERT_VALUES);CHKERRQ(ierr);
191d4002b98SHong Zhang       }
192d4002b98SHong Zhang     }
193d4002b98SHong Zhang   }
194d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
195d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
197d4002b98SHong Zhang 
198d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
199d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
200d4002b98SHong Zhang   } else {
201d4002b98SHong Zhang     *newmat = B;
202d4002b98SHong Zhang   }
203d4002b98SHong Zhang   PetscFunctionReturn(0);
204d4002b98SHong Zhang }
205d4002b98SHong Zhang 
206d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
207d4002b98SHong Zhang 
208d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
209d4002b98SHong Zhang {
210d4002b98SHong Zhang   Mat               B;
211d4002b98SHong Zhang   Mat_SeqAIJ        *a=(Mat_SeqAIJ*)A->data;
212d4002b98SHong Zhang   PetscInt          *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols;
213d4002b98SHong Zhang   const PetscInt    *cols;
214d4002b98SHong Zhang   const PetscScalar *vals;
215d4002b98SHong Zhang   PetscErrorCode    ierr;
216d4002b98SHong Zhang 
217d4002b98SHong Zhang   PetscFunctionBegin;
218d4002b98SHong Zhang   if (A->rmap->bs > 1) {
219d4002b98SHong Zhang     ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr);
220d4002b98SHong Zhang     PetscFunctionReturn(0);
221d4002b98SHong Zhang   }
222d4002b98SHong Zhang   /* Can we just use ilen? */
223d4002b98SHong Zhang   ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr);
224d4002b98SHong Zhang   for (i=0; i<m; i++) {
225d4002b98SHong Zhang     rowlengths[i] = ai[i+1] - ai[i];
226d4002b98SHong Zhang   }
227d4002b98SHong Zhang 
228d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
229d4002b98SHong Zhang   ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
230d4002b98SHong Zhang   ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr);
231d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr);
232d4002b98SHong Zhang   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
233d4002b98SHong Zhang 
234d4002b98SHong Zhang   ierr = MatSetOption(B,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
235d4002b98SHong Zhang 
236d4002b98SHong Zhang   for (row=0; row<m; row++) {
237d4002b98SHong Zhang     ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
238d4002b98SHong Zhang     ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
239d4002b98SHong Zhang     ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr);
240d4002b98SHong Zhang   }
241d4002b98SHong Zhang   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
242d4002b98SHong Zhang   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
243d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
244d4002b98SHong Zhang 
245d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
246d4002b98SHong Zhang     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
247d4002b98SHong Zhang   } else {
248d4002b98SHong Zhang     *newmat = B;
249d4002b98SHong Zhang   }
250d4002b98SHong Zhang   PetscFunctionReturn(0);
251d4002b98SHong Zhang }
252d4002b98SHong Zhang 
253d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy)
254d4002b98SHong Zhang {
255d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
256d4002b98SHong Zhang   PetscScalar       *y;
257d4002b98SHong Zhang   const PetscScalar *x;
258d4002b98SHong Zhang   const MatScalar   *aval=a->val;
259d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
260d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
261*7285fed1SHong Zhang   PetscInt          i,j;
262d4002b98SHong Zhang   PetscErrorCode    ierr;
263d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
264d4002b98SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
265d4002b98SHong Zhang   __m256i           vec_idx;
266d4002b98SHong Zhang   __mmask8          mask;
267d4002b98SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
268d4002b98SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
269d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
270d4002b98SHong Zhang   __m128d           vec_x_tmp;
271d4002b98SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
272d4002b98SHong Zhang   MatScalar         yval;
273d4002b98SHong Zhang   PetscInt          r,rows_left,row,nnz_in_row;
274d4002b98SHong Zhang #else
275d4002b98SHong Zhang   PetscScalar       sum[8];
276d4002b98SHong Zhang #endif
277d4002b98SHong Zhang 
278d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
279d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
280d4002b98SHong Zhang #endif
281d4002b98SHong Zhang 
282d4002b98SHong Zhang   PetscFunctionBegin;
283d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
284d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
285d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
286d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
287d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
288d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
289d4002b98SHong Zhang 
290d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
291d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
292d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
293d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
294d4002b98SHong Zhang 
29538efe8efSHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
296d4002b98SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
297d4002b98SHong Zhang     case 3:
298d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
299d4002b98SHong Zhang       acolidx += 8; aval += 8;
300d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
301d4002b98SHong Zhang       acolidx += 8; aval += 8;
302d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
303d4002b98SHong Zhang       acolidx += 8; aval += 8;
304d4002b98SHong Zhang       j += 3;
305d4002b98SHong Zhang       break;
306d4002b98SHong Zhang     case 2:
307d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
308d4002b98SHong Zhang       acolidx += 8; aval += 8;
309d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
310d4002b98SHong Zhang       acolidx += 8; aval += 8;
311d4002b98SHong Zhang       j += 2;
312d4002b98SHong Zhang       break;
313d4002b98SHong Zhang     case 1:
314d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
315d4002b98SHong Zhang       acolidx += 8; aval += 8;
316d4002b98SHong Zhang       j += 1;
317d4002b98SHong Zhang       break;
318d4002b98SHong Zhang     }
319d4002b98SHong Zhang     #pragma novector
320d4002b98SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
321d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
322d4002b98SHong Zhang       acolidx += 8; aval += 8;
323d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
324d4002b98SHong Zhang       acolidx += 8; aval += 8;
325d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
326d4002b98SHong Zhang       acolidx += 8; aval += 8;
327d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
328d4002b98SHong Zhang       acolidx += 8; aval += 8;
329d4002b98SHong Zhang     }
330d4002b98SHong Zhang 
331d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
332d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
333d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
334d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
335d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
336d4002b98SHong Zhang       _mm512_mask_store_pd(&y[8*i],mask,vec_y);
337d4002b98SHong Zhang     } else {
338d4002b98SHong Zhang       _mm512_store_pd(&y[8*i],vec_y);
339d4002b98SHong Zhang     }
340d4002b98SHong Zhang   }
341d4002b98SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
342d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
343d4002b98SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
344d4002b98SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
345d4002b98SHong Zhang 
346d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
347d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
348d4002b98SHong Zhang 
349d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
350d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
351d4002b98SHong Zhang       rows_left = A->rmap->n - 8*i;
352d4002b98SHong Zhang       for (r=0; r<rows_left; ++r) {
353d4002b98SHong Zhang         yval = (MatScalar)0;
354d4002b98SHong Zhang         row = 8*i + r;
355d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
356d4002b98SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]];
357d4002b98SHong Zhang         y[row] = yval;
358d4002b98SHong Zhang       }
359d4002b98SHong Zhang       break;
360d4002b98SHong Zhang     }
361d4002b98SHong Zhang 
362d4002b98SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
363*7285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
364d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
365d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
366d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
367d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
368d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
369d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
370d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
371d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
372d4002b98SHong Zhang       aval     += 4;
373d4002b98SHong Zhang 
374d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
375d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
376d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
377d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
378d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
379d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
380d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
381d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
382d4002b98SHong Zhang       aval     += 4;
383d4002b98SHong Zhang     }
384d4002b98SHong Zhang 
385d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8,     vec_y);
386d4002b98SHong Zhang     _mm256_storeu_pd(y + i*8 + 4, vec_y2);
387d4002b98SHong Zhang   }
388d4002b98SHong Zhang #else
389d4002b98SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
390d4002b98SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
391d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
392d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
393d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
394d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
395d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
396d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
397d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
398d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
399d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
400d4002b98SHong Zhang     }
401d4002b98SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */
402d4002b98SHong Zhang       for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j];
403d4002b98SHong Zhang     } else {
404*7285fed1SHong Zhang       for(j=0; j<8; j++) y[8*i+j] = sum[j];
405d4002b98SHong Zhang     }
406d4002b98SHong Zhang   }
407d4002b98SHong Zhang #endif
408d4002b98SHong Zhang 
409d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */
410d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
411d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
412d4002b98SHong Zhang   PetscFunctionReturn(0);
413d4002b98SHong Zhang }
414d4002b98SHong Zhang 
415d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
416d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)
417d4002b98SHong Zhang {
418d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
419d4002b98SHong Zhang   PetscScalar       *y,*z;
420d4002b98SHong Zhang   const PetscScalar *x;
421d4002b98SHong Zhang   const MatScalar   *aval=a->val;
422d4002b98SHong Zhang   PetscInt          totalslices=a->totalslices;
423d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
424d4002b98SHong Zhang   PetscInt          i,j;
425d4002b98SHong Zhang   PetscErrorCode    ierr;
426d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
427*7285fed1SHong Zhang   __m512d           vec_x,vec_y,vec_vals;
428d4002b98SHong Zhang   __m256i           vec_idx;
429d4002b98SHong Zhang   __mmask8          mask;
430*7285fed1SHong Zhang   __m512d           vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4;
431*7285fed1SHong Zhang   __m256i           vec_idx2,vec_idx3,vec_idx4;
432*7285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
433*7285fed1SHong Zhang   __m128d           vec_x_tmp;
434*7285fed1SHong Zhang   __m256d           vec_x,vec_y,vec_y2,vec_vals;
435*7285fed1SHong Zhang   MatScalar         yval;
436*7285fed1SHong Zhang   PetscInt          r,row,nnz_in_row;
437d4002b98SHong Zhang #else
438d4002b98SHong Zhang   PetscScalar       sum[8];
439d4002b98SHong Zhang #endif
440d4002b98SHong Zhang 
441d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
442d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
443d4002b98SHong Zhang #endif
444d4002b98SHong Zhang 
445d4002b98SHong Zhang   PetscFunctionBegin;
446d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
447d4002b98SHong Zhang   ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
448d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
449*7285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
450*7285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
451*7285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
452*7285fed1SHong Zhang 
453d4002b98SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
454d4002b98SHong Zhang       mask   = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07)));
455*7285fed1SHong Zhang       vec_y  = _mm512_mask_load_pd(vec_y,mask,&y[8*i]);
456*7285fed1SHong Zhang     } else {
457*7285fed1SHong Zhang       vec_y  = _mm512_load_pd(&y[8*i]);
458*7285fed1SHong Zhang     }
459*7285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
460*7285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
461*7285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
462*7285fed1SHong Zhang 
463*7285fed1SHong Zhang     j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */
464*7285fed1SHong Zhang     switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) {
465*7285fed1SHong Zhang     case 3:
466*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
467*7285fed1SHong Zhang       acolidx += 8; aval += 8;
468*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
469*7285fed1SHong Zhang       acolidx += 8; aval += 8;
470*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
471*7285fed1SHong Zhang       acolidx += 8; aval += 8;
472*7285fed1SHong Zhang       j += 3;
473*7285fed1SHong Zhang       break;
474*7285fed1SHong Zhang     case 2:
475*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
476*7285fed1SHong Zhang       acolidx += 8; aval += 8;
477*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
478*7285fed1SHong Zhang       acolidx += 8; aval += 8;
479*7285fed1SHong Zhang       j += 2;
480*7285fed1SHong Zhang       break;
481*7285fed1SHong Zhang     case 1:
482*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
483*7285fed1SHong Zhang       acolidx += 8; aval += 8;
484*7285fed1SHong Zhang       j += 1;
485*7285fed1SHong Zhang       break;
486*7285fed1SHong Zhang     }
487*7285fed1SHong Zhang     #pragma novector
488*7285fed1SHong Zhang     for (; j<(a->sliidx[i+1]>>3); j+=4) {
489*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y);
490*7285fed1SHong Zhang       acolidx += 8; aval += 8;
491*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2);
492*7285fed1SHong Zhang       acolidx += 8; aval += 8;
493*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3);
494*7285fed1SHong Zhang       acolidx += 8; aval += 8;
495*7285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4);
496*7285fed1SHong Zhang       acolidx += 8; aval += 8;
497*7285fed1SHong Zhang     }
498*7285fed1SHong Zhang 
499*7285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y2);
500*7285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y3);
501*7285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y,vec_y4);
502*7285fed1SHong Zhang     if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
503d4002b98SHong Zhang       _mm512_mask_store_pd(&z[8*i],mask,vec_y);
504d4002b98SHong Zhang     } else {
505d4002b98SHong Zhang       _mm512_store_pd(&z[8*i],vec_y);
506d4002b98SHong Zhang     }
507*7285fed1SHong Zhang   }
508*7285fed1SHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX)
509*7285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over full slices */
510*7285fed1SHong Zhang     PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
511*7285fed1SHong Zhang     PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0);
512*7285fed1SHong Zhang 
513*7285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
514*7285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
515*7285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
516*7285fed1SHong Zhang         row        = 8*i + r;
517*7285fed1SHong Zhang         yval       = (MatScalar)0.0;
518*7285fed1SHong Zhang         nnz_in_row = a->rlen[row];
519*7285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]];
520*7285fed1SHong Zhang         z[row] = y[row] + yval;
521*7285fed1SHong Zhang       }
522*7285fed1SHong Zhang       break;
523*7285fed1SHong Zhang     }
524*7285fed1SHong Zhang 
525*7285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y+8*i);
526*7285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y+8*i+4);
527*7285fed1SHong Zhang 
528*7285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
529*7285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
530*7285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
531*7285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
532*7285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
533*7285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
534*7285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
535*7285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
536*7285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
537*7285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y);
538*7285fed1SHong Zhang       aval     += 4;
539*7285fed1SHong Zhang 
540*7285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
541*7285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
542*7285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
543*7285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,0);
544*7285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
545*7285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
546*7285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x,vec_x_tmp,1);
547*7285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2);
548*7285fed1SHong Zhang       aval     += 4;
549*7285fed1SHong Zhang     }
550*7285fed1SHong Zhang 
551*7285fed1SHong Zhang     _mm256_storeu_pd(z+i*8,vec_y);
552*7285fed1SHong Zhang     _mm256_storeu_pd(z+i*8+4,vec_y2);
553*7285fed1SHong Zhang   }
554d4002b98SHong Zhang #else
555*7285fed1SHong Zhang   for (i=0; i<totalslices; i++) { /* loop over slices */
556*7285fed1SHong Zhang     for (j=0; j<8; j++) sum[j] = 0.0;
557d4002b98SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
558d4002b98SHong Zhang       sum[0] += aval[j] * x[acolidx[j]];
559d4002b98SHong Zhang       sum[1] += aval[j+1] * x[acolidx[j+1]];
560d4002b98SHong Zhang       sum[2] += aval[j+2] * x[acolidx[j+2]];
561d4002b98SHong Zhang       sum[3] += aval[j+3] * x[acolidx[j+3]];
562d4002b98SHong Zhang       sum[4] += aval[j+4] * x[acolidx[j+4]];
563d4002b98SHong Zhang       sum[5] += aval[j+5] * x[acolidx[j+5]];
564d4002b98SHong Zhang       sum[6] += aval[j+6] * x[acolidx[j+6]];
565d4002b98SHong Zhang       sum[7] += aval[j+7] * x[acolidx[j+7]];
566d4002b98SHong Zhang     }
567*7285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
568*7285fed1SHong Zhang       for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j];
569d4002b98SHong Zhang     } else {
570*7285fed1SHong Zhang       for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j];
571*7285fed1SHong Zhang     }
572d4002b98SHong Zhang   }
573d4002b98SHong Zhang #endif
574d4002b98SHong Zhang 
575d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
576d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
577d4002b98SHong Zhang   ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr);
578d4002b98SHong Zhang   PetscFunctionReturn(0);
579d4002b98SHong Zhang }
580d4002b98SHong Zhang 
581d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)
582d4002b98SHong Zhang {
583d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
584d4002b98SHong Zhang   PetscScalar       *y;
585d4002b98SHong Zhang   const PetscScalar *x;
586d4002b98SHong Zhang   const MatScalar   *aval=a->val;
587d4002b98SHong Zhang   const PetscInt    *acolidx=a->colidx;
588*7285fed1SHong Zhang   PetscInt          i,j,r,row,nnz_in_row,totalslices=a->totalslices;
589d4002b98SHong Zhang   PetscErrorCode    ierr;
590d4002b98SHong Zhang 
591d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
592d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval)
593d4002b98SHong Zhang #endif
594d4002b98SHong Zhang 
595d4002b98SHong Zhang   PetscFunctionBegin;
596d4002b98SHong Zhang   if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); }
597d4002b98SHong Zhang   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
598d4002b98SHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
599d4002b98SHong Zhang   for (i=0; i<a->totalslices; i++) { /* loop over slices */
600*7285fed1SHong Zhang     if (i == totalslices-1 && (A->rmap->n & 0x07)) {
601*7285fed1SHong Zhang       for (r=0; r<(A->rmap->n & 0x07); ++r) {
602*7285fed1SHong Zhang         row        = 8*i + r;
603*7285fed1SHong Zhang         nnz_in_row = a->rlen[row];
604*7285fed1SHong Zhang         for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row];
605*7285fed1SHong Zhang       }
606*7285fed1SHong Zhang       break;
607*7285fed1SHong Zhang     }
608*7285fed1SHong Zhang     for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) {
609*7285fed1SHong Zhang       y[acolidx[j]]   += aval[j] * x[8*i];
610*7285fed1SHong Zhang       y[acolidx[j+1]] += aval[j+1] * x[8*i+1];
611*7285fed1SHong Zhang       y[acolidx[j+2]] += aval[j+2] * x[8*i+2];
612*7285fed1SHong Zhang       y[acolidx[j+3]] += aval[j+3] * x[8*i+3];
613*7285fed1SHong Zhang       y[acolidx[j+4]] += aval[j+4] * x[8*i+4];
614*7285fed1SHong Zhang       y[acolidx[j+5]] += aval[j+5] * x[8*i+5];
615*7285fed1SHong Zhang       y[acolidx[j+6]] += aval[j+6] * x[8*i+6];
616*7285fed1SHong Zhang       y[acolidx[j+7]] += aval[j+7] * x[8*i+7];
617d4002b98SHong Zhang     }
618d4002b98SHong Zhang   }
619d4002b98SHong Zhang   ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr);
620d4002b98SHong Zhang   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
621d4002b98SHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
622d4002b98SHong Zhang   PetscFunctionReturn(0);
623d4002b98SHong Zhang }
624d4002b98SHong Zhang 
625d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)
626d4002b98SHong Zhang {
627d4002b98SHong Zhang   PetscErrorCode ierr;
628d4002b98SHong Zhang 
629d4002b98SHong Zhang   PetscFunctionBegin;
630d4002b98SHong Zhang   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
631d4002b98SHong Zhang   ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr);
632d4002b98SHong Zhang   PetscFunctionReturn(0);
633d4002b98SHong Zhang }
634d4002b98SHong Zhang 
635d4002b98SHong Zhang /*
636d4002b98SHong Zhang      Checks for missing diagonals
637d4002b98SHong Zhang */
638d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool  *missing,PetscInt *d)
639d4002b98SHong Zhang {
640d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
641d4002b98SHong Zhang   PetscInt    *diag,i;
642d4002b98SHong Zhang 
643d4002b98SHong Zhang   PetscFunctionBegin;
644d4002b98SHong Zhang   *missing = PETSC_FALSE;
645d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
646d4002b98SHong Zhang     *missing = PETSC_TRUE;
647d4002b98SHong Zhang     if (d) *d = 0;
648d4002b98SHong Zhang     PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");
649d4002b98SHong Zhang   } else {
650d4002b98SHong Zhang     diag = a->diag;
651d4002b98SHong Zhang     for (i=0; i<A->rmap->n; i++) {
652d4002b98SHong Zhang       if (diag[i] == -1) {
653d4002b98SHong Zhang         *missing = PETSC_TRUE;
654d4002b98SHong Zhang         if (d) *d = i;
655d4002b98SHong Zhang         PetscInfo1(A,"Matrix is missing diagonal number %D\n",i);
656d4002b98SHong Zhang         break;
657d4002b98SHong Zhang       }
658d4002b98SHong Zhang     }
659d4002b98SHong Zhang   }
660d4002b98SHong Zhang   PetscFunctionReturn(0);
661d4002b98SHong Zhang }
662d4002b98SHong Zhang 
663d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
664d4002b98SHong Zhang {
665d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
666d4002b98SHong Zhang   PetscInt       i,j,m=A->rmap->n,shift;
667d4002b98SHong Zhang   PetscErrorCode ierr;
668d4002b98SHong Zhang 
669d4002b98SHong Zhang   PetscFunctionBegin;
670d4002b98SHong Zhang   if (!a->diag) {
671d4002b98SHong Zhang     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
672d4002b98SHong Zhang     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
673d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
674d4002b98SHong Zhang   }
675d4002b98SHong Zhang   for (i=0; i<m; i++) { /* loop over rows */
676d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
677d4002b98SHong Zhang     a->diag[i] = -1;
678d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
679d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
680d4002b98SHong Zhang         a->diag[i] = shift+j*8;
681d4002b98SHong Zhang         break;
682d4002b98SHong Zhang       }
683d4002b98SHong Zhang     }
684d4002b98SHong Zhang   }
685d4002b98SHong Zhang   PetscFunctionReturn(0);
686d4002b98SHong Zhang }
687d4002b98SHong Zhang 
688d4002b98SHong Zhang /*
689d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
690d4002b98SHong Zhang */
691d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)
692d4002b98SHong Zhang {
693d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*) A->data;
694d4002b98SHong Zhang   PetscInt       i,*diag,m = A->rmap->n;
695d4002b98SHong Zhang   MatScalar      *val = a->val;
696d4002b98SHong Zhang   PetscScalar    *idiag,*mdiag;
697d4002b98SHong Zhang   PetscErrorCode ierr;
698d4002b98SHong Zhang 
699d4002b98SHong Zhang   PetscFunctionBegin;
700d4002b98SHong Zhang   if (a->idiagvalid) PetscFunctionReturn(0);
701d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
702d4002b98SHong Zhang   diag = a->diag;
703d4002b98SHong Zhang   if (!a->idiag) {
704d4002b98SHong Zhang     ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr);
705d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr);
706d4002b98SHong Zhang     val  = a->val;
707d4002b98SHong Zhang   }
708d4002b98SHong Zhang   mdiag = a->mdiag;
709d4002b98SHong Zhang   idiag = a->idiag;
710d4002b98SHong Zhang 
711d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
712d4002b98SHong Zhang     for (i=0; i<m; i++) {
713d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
714d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
715d4002b98SHong Zhang         if (PetscRealPart(fshift)) {
716d4002b98SHong Zhang           ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr);
717d4002b98SHong Zhang           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
718d4002b98SHong Zhang           A->factorerror_zeropivot_value = 0.0;
719d4002b98SHong Zhang           A->factorerror_zeropivot_row   = i;
720d4002b98SHong Zhang         } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i);
721d4002b98SHong Zhang       }
722d4002b98SHong Zhang       idiag[i] = 1.0/val[diag[i]];
723d4002b98SHong Zhang     }
724d4002b98SHong Zhang     ierr = PetscLogFlops(m);CHKERRQ(ierr);
725d4002b98SHong Zhang   } else {
726d4002b98SHong Zhang     for (i=0; i<m; i++) {
727d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
728d4002b98SHong Zhang       idiag[i] = omega/(fshift + val[diag[i]]);
729d4002b98SHong Zhang     }
730d4002b98SHong Zhang     ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr);
731d4002b98SHong Zhang   }
732d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
733d4002b98SHong Zhang   PetscFunctionReturn(0);
734d4002b98SHong Zhang }
735d4002b98SHong Zhang 
736d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
737d4002b98SHong Zhang {
738d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
739d4002b98SHong Zhang   PetscErrorCode ierr;
740d4002b98SHong Zhang 
741d4002b98SHong Zhang   PetscFunctionBegin;
742d4002b98SHong Zhang   ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr);
743d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
744d4002b98SHong Zhang   PetscFunctionReturn(0);
745d4002b98SHong Zhang }
746d4002b98SHong Zhang 
747d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A)
748d4002b98SHong Zhang {
749d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
750d4002b98SHong Zhang   PetscErrorCode ierr;
751d4002b98SHong Zhang 
752d4002b98SHong Zhang   PetscFunctionBegin;
753d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
754d4002b98SHong Zhang   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz);
755d4002b98SHong Zhang #endif
756d4002b98SHong Zhang   ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr);
757d4002b98SHong Zhang   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
758d4002b98SHong Zhang   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
759d4002b98SHong Zhang   ierr = PetscFree(a->diag);CHKERRQ(ierr);
760d4002b98SHong Zhang   ierr = PetscFree(a->ibdiag);CHKERRQ(ierr);
761d4002b98SHong Zhang   ierr = PetscFree(a->rlen);CHKERRQ(ierr);
762d4002b98SHong Zhang   ierr = PetscFree(a->sliidx);CHKERRQ(ierr);
763d4002b98SHong Zhang   ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr);
764d4002b98SHong Zhang   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
765d4002b98SHong Zhang   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
766d4002b98SHong Zhang   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
767d4002b98SHong Zhang 
768d4002b98SHong Zhang   ierr = PetscFree(A->data);CHKERRQ(ierr);
769d4002b98SHong Zhang 
770d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
771d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
772d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
773d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
774d4002b98SHong Zhang #endif
775d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr);
776d4002b98SHong Zhang   PetscFunctionReturn(0);
777d4002b98SHong Zhang }
778d4002b98SHong Zhang 
779d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)
780d4002b98SHong Zhang {
781d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
782d4002b98SHong Zhang   PetscErrorCode ierr;
783d4002b98SHong Zhang 
784d4002b98SHong Zhang   PetscFunctionBegin;
785d4002b98SHong Zhang   switch (op) {
786d4002b98SHong Zhang   case MAT_ROW_ORIENTED:
787d4002b98SHong Zhang     a->roworiented = flg;
788d4002b98SHong Zhang     break;
789d4002b98SHong Zhang   case MAT_KEEP_NONZERO_PATTERN:
790d4002b98SHong Zhang     a->keepnonzeropattern = flg;
791d4002b98SHong Zhang     break;
792d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATIONS:
793d4002b98SHong Zhang     a->nonew = (flg ? 0 : 1);
794d4002b98SHong Zhang     break;
795d4002b98SHong Zhang   case MAT_NEW_NONZERO_LOCATION_ERR:
796d4002b98SHong Zhang     a->nonew = (flg ? -1 : 0);
797d4002b98SHong Zhang     break;
798d4002b98SHong Zhang   case MAT_NEW_NONZERO_ALLOCATION_ERR:
799d4002b98SHong Zhang     a->nonew = (flg ? -2 : 0);
800d4002b98SHong Zhang     break;
801d4002b98SHong Zhang   case MAT_UNUSED_NONZERO_LOCATION_ERR:
802d4002b98SHong Zhang     a->nounused = (flg ? -1 : 0);
803d4002b98SHong Zhang     break;
804d4002b98SHong Zhang   case MAT_NEW_DIAGONALS:
805d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
806d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
807d4002b98SHong Zhang     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
808d4002b98SHong Zhang     break;
809d4002b98SHong Zhang   case MAT_SPD:
810d4002b98SHong Zhang   case MAT_SYMMETRIC:
811d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
812d4002b98SHong Zhang   case MAT_HERMITIAN:
813d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
814d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
815d4002b98SHong Zhang     break;
816d4002b98SHong Zhang   default:
817d4002b98SHong Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
818d4002b98SHong Zhang   }
819d4002b98SHong Zhang   PetscFunctionReturn(0);
820d4002b98SHong Zhang }
821d4002b98SHong Zhang 
822d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v)
823d4002b98SHong Zhang {
824d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
825d4002b98SHong Zhang   PetscInt       i,j,n,shift;
826d4002b98SHong Zhang   PetscScalar    *x,zero=0.0;
827d4002b98SHong Zhang   PetscErrorCode ierr;
828d4002b98SHong Zhang 
829d4002b98SHong Zhang   PetscFunctionBegin;
830d4002b98SHong Zhang   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
831d4002b98SHong Zhang   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
832d4002b98SHong Zhang 
833d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
834d4002b98SHong Zhang     PetscInt *diag=a->diag;
835d4002b98SHong Zhang     ierr = VecGetArray(v,&x);CHKERRQ(ierr);
836d4002b98SHong Zhang     for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]];
837d4002b98SHong Zhang     ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
838d4002b98SHong Zhang     PetscFunctionReturn(0);
839d4002b98SHong Zhang   }
840d4002b98SHong Zhang 
841d4002b98SHong Zhang   ierr = VecSet(v,zero);CHKERRQ(ierr);
842d4002b98SHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
843d4002b98SHong Zhang   for (i=0; i<n; i++) { /* loop over rows */
844d4002b98SHong Zhang     shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
845d4002b98SHong Zhang     x[i] = 0;
846d4002b98SHong Zhang     for (j=0; j<a->rlen[i]; j++) {
847d4002b98SHong Zhang       if (a->colidx[shift+j*8] == i) {
848d4002b98SHong Zhang         x[i] = a->val[shift+j*8];
849d4002b98SHong Zhang         break;
850d4002b98SHong Zhang       }
851d4002b98SHong Zhang     }
852d4002b98SHong Zhang   }
853d4002b98SHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
854d4002b98SHong Zhang   PetscFunctionReturn(0);
855d4002b98SHong Zhang }
856d4002b98SHong Zhang 
857d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)
858d4002b98SHong Zhang {
859d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
860d4002b98SHong Zhang   const PetscScalar *l,*r;
861d4002b98SHong Zhang   PetscInt          i,j,m,n,row;
862d4002b98SHong Zhang   PetscErrorCode    ierr;
863d4002b98SHong Zhang 
864d4002b98SHong Zhang   PetscFunctionBegin;
865d4002b98SHong Zhang   if (ll) {
866d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
867d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
868d4002b98SHong Zhang     ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr);
869d4002b98SHong Zhang     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length");
870d4002b98SHong Zhang     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
871d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
872d4002b98SHong Zhang       for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) {
873d4002b98SHong Zhang         a->val[j] *= l[8*i+row];
874d4002b98SHong Zhang       }
875d4002b98SHong Zhang     }
876d4002b98SHong Zhang     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
877d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
878d4002b98SHong Zhang   }
879d4002b98SHong Zhang   if (rr) {
880d4002b98SHong Zhang     ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr);
881d4002b98SHong Zhang     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length");
882d4002b98SHong Zhang     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
883d4002b98SHong Zhang     for (i=0; i<a->totalslices; i++) { /* loop over slices */
884d4002b98SHong Zhang       for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) {
885d4002b98SHong Zhang         a->val[j] *= r[a->colidx[j]];
886d4002b98SHong Zhang       }
887d4002b98SHong Zhang     }
888d4002b98SHong Zhang     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
889d4002b98SHong Zhang     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
890d4002b98SHong Zhang   }
891d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
892d4002b98SHong Zhang   PetscFunctionReturn(0);
893d4002b98SHong Zhang }
894d4002b98SHong Zhang 
895d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
896d4002b98SHong Zhang 
897d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
898d4002b98SHong Zhang {
899d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
900d4002b98SHong Zhang   PetscInt    *cp,i,k,low,high,t,row,col,l;
901d4002b98SHong Zhang   PetscInt    shift;
902d4002b98SHong Zhang   MatScalar   *vp;
903d4002b98SHong Zhang 
904d4002b98SHong Zhang   PetscFunctionBegin;
905d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
906d4002b98SHong Zhang     row = im[k];
907d4002b98SHong Zhang     if (row<0) continue;
908d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
909d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
910d4002b98SHong Zhang #endif
911d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
912d4002b98SHong Zhang     cp = a->colidx+shift; /* pointer to the row */
913d4002b98SHong Zhang     vp = a->val+shift; /* pointer to the row */
914d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added rows */
915d4002b98SHong Zhang       col = in[l];
916d4002b98SHong Zhang       if (col<0) continue;
917d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
918d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1);
919d4002b98SHong Zhang #endif
920d4002b98SHong Zhang       high = a->rlen[row]; low = 0; /* assume unsorted */
921d4002b98SHong Zhang       while (high-low > 5) {
922d4002b98SHong Zhang         t = (low+high)/2;
923d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
924d4002b98SHong Zhang         else low = t;
925d4002b98SHong Zhang       }
926d4002b98SHong Zhang       for (i=low; i<high; i++) {
927d4002b98SHong Zhang         if (*(cp+8*i) > col) break;
928d4002b98SHong Zhang         if (*(cp+8*i) == col) {
929d4002b98SHong Zhang           *v++ = *(vp+8*i);
930d4002b98SHong Zhang           goto finished;
931d4002b98SHong Zhang         }
932d4002b98SHong Zhang       }
933d4002b98SHong Zhang       *v++ = 0.0;
934d4002b98SHong Zhang     finished:;
935d4002b98SHong Zhang     }
936d4002b98SHong Zhang   }
937d4002b98SHong Zhang   PetscFunctionReturn(0);
938d4002b98SHong Zhang }
939d4002b98SHong Zhang 
940d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)
941d4002b98SHong Zhang {
942d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
943d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
944d4002b98SHong Zhang   const char        *name;
945d4002b98SHong Zhang   PetscViewerFormat format;
946d4002b98SHong Zhang   PetscErrorCode    ierr;
947d4002b98SHong Zhang 
948d4002b98SHong Zhang   PetscFunctionBegin;
949d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
950d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
951d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
952d4002b98SHong Zhang     /*
953d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
954d4002b98SHong Zhang       nofinalvalue = 1;
955d4002b98SHong Zhang     }
956d4002b98SHong Zhang     */
957d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
958d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr);
959d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr);
960d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
961d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
962d4002b98SHong Zhang #else
963d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr);
964d4002b98SHong Zhang #endif
965d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr);
966d4002b98SHong Zhang 
967d4002b98SHong Zhang     for (i=0; i<m; i++) {
968d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
969d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
970d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
971d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
972d4002b98SHong Zhang #else
973d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr);
974d4002b98SHong Zhang #endif
975d4002b98SHong Zhang       }
976d4002b98SHong Zhang     }
977d4002b98SHong Zhang     /*
978d4002b98SHong Zhang     if (nofinalvalue) {
979d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
980d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr);
981d4002b98SHong Zhang #else
982d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"%D %D  %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr);
983d4002b98SHong Zhang #endif
984d4002b98SHong Zhang     }
985d4002b98SHong Zhang     */
986d4002b98SHong Zhang     ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
987d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr);
988d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
989d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
990d4002b98SHong Zhang     PetscFunctionReturn(0);
991d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
992d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
993d4002b98SHong Zhang     for (i=0; i<m; i++) {
994d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
995d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
996d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
997d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
998d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
999d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1000d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) {
1001d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1002d4002b98SHong Zhang         } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) {
1003d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1004d4002b98SHong Zhang         }
1005d4002b98SHong Zhang #else
1006d4002b98SHong Zhang         if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);}
1007d4002b98SHong Zhang #endif
1008d4002b98SHong Zhang       }
1009d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1010d4002b98SHong Zhang     }
1011d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1012d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1013d4002b98SHong Zhang     PetscInt    cnt=0,jcnt;
1014d4002b98SHong Zhang     PetscScalar value;
1015d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1016d4002b98SHong Zhang     PetscBool   realonly=PETSC_TRUE;
1017d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1018d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1019d4002b98SHong Zhang         realonly = PETSC_FALSE;
1020d4002b98SHong Zhang         break;
1021d4002b98SHong Zhang       }
1022d4002b98SHong Zhang     }
1023d4002b98SHong Zhang #endif
1024d4002b98SHong Zhang 
1025d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1026d4002b98SHong Zhang     for (i=0; i<m; i++) {
1027d4002b98SHong Zhang       jcnt = 0;
1028d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1029d4002b98SHong Zhang       for (j=0; j<A->cmap->n; j++) {
1030d4002b98SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) {
1031d4002b98SHong Zhang           value = a->val[cnt++];
1032d4002b98SHong Zhang           jcnt++;
1033d4002b98SHong Zhang         } else {
1034d4002b98SHong Zhang           value = 0.0;
1035d4002b98SHong Zhang         }
1036d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1037d4002b98SHong Zhang         if (realonly) {
1038d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr);
1039d4002b98SHong Zhang         } else {
1040d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr);
1041d4002b98SHong Zhang         }
1042d4002b98SHong Zhang #else
1043d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr);
1044d4002b98SHong Zhang #endif
1045d4002b98SHong Zhang       }
1046d4002b98SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1047d4002b98SHong Zhang     }
1048d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1049d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1050d4002b98SHong Zhang     PetscInt fshift=1;
1051d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1052d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1053d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr);
1054d4002b98SHong Zhang #else
1055d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr);
1056d4002b98SHong Zhang #endif
1057d4002b98SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr);
1058d4002b98SHong Zhang     for (i=0; i<m; i++) {
1059d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1060d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1061d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1062d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1063d4002b98SHong Zhang #else
1064d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr);
1065d4002b98SHong Zhang #endif
1066d4002b98SHong Zhang       }
1067d4002b98SHong Zhang     }
1068d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1069d4002b98SHong Zhang   } else {
1070d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1071d4002b98SHong Zhang     if (A->factortype) {
1072d4002b98SHong Zhang       for (i=0; i<m; i++) {
1073d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1074d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1075d4002b98SHong Zhang         /* L part */
1076d4002b98SHong Zhang         for (j=shift; j<a->diag[i]; j+=8) {
1077d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1078d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) {
1079d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1080d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) {
1081d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1082d4002b98SHong Zhang           } else {
1083d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1084d4002b98SHong Zhang           }
1085d4002b98SHong Zhang #else
1086d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1087d4002b98SHong Zhang #endif
1088d4002b98SHong Zhang         }
1089d4002b98SHong Zhang         /* diagonal */
1090d4002b98SHong Zhang         j = a->diag[i];
1091d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1092d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
1093d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr);
1094d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1095d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr);
1096d4002b98SHong Zhang         } else {
1097d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr);
1098d4002b98SHong Zhang         }
1099d4002b98SHong Zhang #else
1100d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr);
1101d4002b98SHong Zhang #endif
1102d4002b98SHong Zhang 
1103d4002b98SHong Zhang         /* U part */
1104d4002b98SHong Zhang         for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) {
1105d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1106d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1107d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr);
1108d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1109d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr);
1110d4002b98SHong Zhang           } else {
1111d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr);
1112d4002b98SHong Zhang           }
1113d4002b98SHong Zhang #else
1114d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr);
1115d4002b98SHong Zhang #endif
1116d4002b98SHong Zhang         }
1117d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1118d4002b98SHong Zhang       }
1119d4002b98SHong Zhang     } else {
1120d4002b98SHong Zhang       for (i=0; i<m; i++) {
1121d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07);
1122d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1123d4002b98SHong Zhang         for (j=0; j<a->rlen[i]; j++) {
1124d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1125d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
1126d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1127d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
1128d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr);
1129d4002b98SHong Zhang           } else {
1130d4002b98SHong Zhang             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr);
1131d4002b98SHong Zhang           }
1132d4002b98SHong Zhang #else
1133d4002b98SHong Zhang           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);
1134d4002b98SHong Zhang #endif
1135d4002b98SHong Zhang         }
1136d4002b98SHong Zhang         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1137d4002b98SHong Zhang       }
1138d4002b98SHong Zhang     }
1139d4002b98SHong Zhang     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1140d4002b98SHong Zhang   }
1141d4002b98SHong Zhang   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
1142d4002b98SHong Zhang   PetscFunctionReturn(0);
1143d4002b98SHong Zhang }
1144d4002b98SHong Zhang 
1145d4002b98SHong Zhang #include <petscdraw.h>
1146d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa)
1147d4002b98SHong Zhang {
1148d4002b98SHong Zhang   Mat               A=(Mat)Aa;
1149d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1150d4002b98SHong Zhang   PetscInt          i,j,m=A->rmap->n,shift;
1151d4002b98SHong Zhang   int               color;
1152d4002b98SHong Zhang   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1153d4002b98SHong Zhang   PetscViewer       viewer;
1154d4002b98SHong Zhang   PetscViewerFormat format;
1155d4002b98SHong Zhang   PetscErrorCode    ierr;
1156d4002b98SHong Zhang 
1157d4002b98SHong Zhang   PetscFunctionBegin;
1158d4002b98SHong Zhang   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1159d4002b98SHong Zhang   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1160d4002b98SHong Zhang   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1161d4002b98SHong Zhang 
1162d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1163d4002b98SHong Zhang 
1164d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1165d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1166d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1167d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1168d4002b98SHong Zhang     for (i=0; i<m; i++) {
1169d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1170d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1171d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1172d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1173d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) >=  0.) continue;
1174d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1175d4002b98SHong Zhang       }
1176d4002b98SHong Zhang     }
1177d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1178d4002b98SHong Zhang     for (i=0; i<m; i++) {
1179d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1180d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1181d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1182d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1183d4002b98SHong Zhang         if (a->val[shift+8*j] !=  0.) continue;
1184d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1185d4002b98SHong Zhang       }
1186d4002b98SHong Zhang     }
1187d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1188d4002b98SHong Zhang     for (i=0; i<m; i++) {
1189d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1190d4002b98SHong Zhang       y_l = m - i - 1.0; y_r = y_l + 1.0;
1191d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1192d4002b98SHong Zhang         x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0;
1193d4002b98SHong Zhang         if (PetscRealPart(a->val[shift+8*j]) <=  0.) continue;
1194d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1195d4002b98SHong Zhang       }
1196d4002b98SHong Zhang     }
1197d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1198d4002b98SHong Zhang   } else {
1199d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1200d4002b98SHong Zhang     /* first determine max of all nonzero values */
1201d4002b98SHong Zhang     PetscReal minv=0.0,maxv=0.0;
1202d4002b98SHong Zhang     PetscInt  count=0;
1203d4002b98SHong Zhang     PetscDraw popup;
1204d4002b98SHong Zhang     for (i=0; i<a->sliidx[a->totalslices]; i++) {
1205d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1206d4002b98SHong Zhang     }
1207d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1208d4002b98SHong Zhang     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
1209d4002b98SHong Zhang     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1210d4002b98SHong Zhang 
1211d4002b98SHong Zhang     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1212d4002b98SHong Zhang     for (i=0; i<m; i++) {
1213d4002b98SHong Zhang       shift = a->sliidx[i>>3]+(i&0x07);
1214d4002b98SHong Zhang       y_l = m - i - 1.0;
1215d4002b98SHong Zhang       y_r = y_l + 1.0;
1216d4002b98SHong Zhang       for (j=0; j<a->rlen[i]; j++) {
1217d4002b98SHong Zhang         x_l = a->colidx[shift+j*8];
1218d4002b98SHong Zhang         x_r = x_l + 1.0;
1219d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv);
1220d4002b98SHong Zhang         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1221d4002b98SHong Zhang         count++;
1222d4002b98SHong Zhang       }
1223d4002b98SHong Zhang     }
1224d4002b98SHong Zhang     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1225d4002b98SHong Zhang   }
1226d4002b98SHong Zhang   PetscFunctionReturn(0);
1227d4002b98SHong Zhang }
1228d4002b98SHong Zhang 
1229d4002b98SHong Zhang #include <petscdraw.h>
1230d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)
1231d4002b98SHong Zhang {
1232d4002b98SHong Zhang   PetscDraw      draw;
1233d4002b98SHong Zhang   PetscReal      xr,yr,xl,yl,h,w;
1234d4002b98SHong Zhang   PetscBool      isnull;
1235d4002b98SHong Zhang   PetscErrorCode ierr;
1236d4002b98SHong Zhang 
1237d4002b98SHong Zhang   PetscFunctionBegin;
1238d4002b98SHong Zhang   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1239d4002b98SHong Zhang   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1240d4002b98SHong Zhang   if (isnull) PetscFunctionReturn(0);
1241d4002b98SHong Zhang 
1242d4002b98SHong Zhang   xr   = A->cmap->n; yr  = A->rmap->n; h = yr/10.0; w = xr/10.0;
1243d4002b98SHong Zhang   xr  += w;          yr += h;         xl = -w;     yl = -h;
1244d4002b98SHong Zhang   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1245d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1246d4002b98SHong Zhang   ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr);
1247d4002b98SHong Zhang   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1248d4002b98SHong Zhang   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1249d4002b98SHong Zhang   PetscFunctionReturn(0);
1250d4002b98SHong Zhang }
1251d4002b98SHong Zhang 
1252d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer)
1253d4002b98SHong Zhang {
1254d4002b98SHong Zhang   PetscBool      iascii,isbinary,isdraw;
1255d4002b98SHong Zhang   PetscErrorCode ierr;
1256d4002b98SHong Zhang 
1257d4002b98SHong Zhang   PetscFunctionBegin;
1258d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1259d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1260d4002b98SHong Zhang   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1261d4002b98SHong Zhang   if (iascii) {
1262d4002b98SHong Zhang     ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr);
1263d4002b98SHong Zhang   } else if (isbinary) {
1264d4002b98SHong Zhang     /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */
1265d4002b98SHong Zhang   } else if (isdraw) {
1266d4002b98SHong Zhang     ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr);
1267d4002b98SHong Zhang   }
1268d4002b98SHong Zhang   PetscFunctionReturn(0);
1269d4002b98SHong Zhang }
1270d4002b98SHong Zhang 
1271d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)
1272d4002b98SHong Zhang {
1273d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1274d4002b98SHong Zhang   PetscInt       i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k;
1275d4002b98SHong Zhang   MatScalar      *vp;
1276d4002b98SHong Zhang   PetscErrorCode ierr;
1277d4002b98SHong Zhang 
1278d4002b98SHong Zhang   PetscFunctionBegin;
1279d4002b98SHong Zhang   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1280d4002b98SHong Zhang   /* To do: compress out the unused elements */
1281d4002b98SHong Zhang   ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr);
1282d4002b98SHong Zhang   ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr);
1283d4002b98SHong Zhang   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr);
1284d4002b98SHong Zhang   ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr);
1285d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1286d4002b98SHong Zhang   for (i=0; i<a->totalslices; ++i) {
1287d4002b98SHong Zhang     shift = a->sliidx[i];    /* starting index of the slice */
1288d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the column indices of the slice */
1289d4002b98SHong Zhang     vp    = a->val+shift;    /* pointer to the nonzero values of the slice */
1290d4002b98SHong Zhang     for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */
1291d4002b98SHong Zhang       row  = 8*i + row_in_slice;
1292d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1293d4002b98SHong Zhang       /*
1294d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1295d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1296d4002b98SHong Zhang       */
1297d4002b98SHong Zhang       lastcol = 0;
1298d4002b98SHong Zhang       if (nrow>0) { /* nonempty row */
1299d4002b98SHong Zhang         lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */
1300d4002b98SHong Zhang       } else if (!row_in_slice) { /* first row of the currect slice is empty */
1301d4002b98SHong Zhang         for (j=1;j<8;j++) {
1302d4002b98SHong Zhang           if (a->rlen[8*i+j]) {
1303d4002b98SHong Zhang             lastcol = cp[j];
1304d4002b98SHong Zhang             break;
1305d4002b98SHong Zhang           }
1306d4002b98SHong Zhang         }
1307d4002b98SHong Zhang       } else {
1308d4002b98SHong Zhang         if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */
1309d4002b98SHong Zhang       }
1310d4002b98SHong Zhang 
1311d4002b98SHong Zhang       for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) {
1312d4002b98SHong Zhang         cp[8*k+row_in_slice] = lastcol;
1313d4002b98SHong Zhang         vp[8*k+row_in_slice] = (MatScalar)0;
1314d4002b98SHong Zhang       }
1315d4002b98SHong Zhang     }
1316d4002b98SHong Zhang   }
1317d4002b98SHong Zhang 
1318d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1319d4002b98SHong Zhang   a->reallocs      = 0;
1320d4002b98SHong Zhang 
1321d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1322d4002b98SHong Zhang   PetscFunctionReturn(0);
1323d4002b98SHong Zhang }
1324d4002b98SHong Zhang 
1325d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info)
1326d4002b98SHong Zhang {
1327d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1328d4002b98SHong Zhang 
1329d4002b98SHong Zhang   PetscFunctionBegin;
1330d4002b98SHong Zhang   info->block_size   = 1.0;
1331d4002b98SHong Zhang   info->nz_allocated = (double)a->maxallocmat;
1332d4002b98SHong Zhang   info->nz_used      = (double)a->sliidx[a->totalslices]; /* include padding zeros */
1333d4002b98SHong Zhang   info->nz_unneeded  = (double)(a->maxallocmat-a->sliidx[a->totalslices]);
1334d4002b98SHong Zhang   info->assemblies   = (double)A->num_ass;
1335d4002b98SHong Zhang   info->mallocs      = (double)A->info.mallocs;
1336d4002b98SHong Zhang   info->memory       = ((PetscObject)A)->mem;
1337d4002b98SHong Zhang   if (A->factortype) {
1338d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1339d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1340d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1341d4002b98SHong Zhang   } else {
1342d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1343d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1344d4002b98SHong Zhang     info->factor_mallocs    = 0;
1345d4002b98SHong Zhang   }
1346d4002b98SHong Zhang   PetscFunctionReturn(0);
1347d4002b98SHong Zhang }
1348d4002b98SHong Zhang 
1349d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
1350d4002b98SHong Zhang {
1351d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1352d4002b98SHong Zhang   PetscInt       shift,i,k,l,low,high,t,ii,row,col,nrow;
1353d4002b98SHong Zhang   PetscInt       *cp,nonew=a->nonew,lastcol=-1;
1354d4002b98SHong Zhang   MatScalar      *vp,value;
1355d4002b98SHong Zhang   PetscErrorCode ierr;
1356d4002b98SHong Zhang 
1357d4002b98SHong Zhang   PetscFunctionBegin;
1358d4002b98SHong Zhang   for (k=0; k<m; k++) { /* loop over added rows */
1359d4002b98SHong Zhang     row = im[k];
1360d4002b98SHong Zhang     if (row < 0) continue;
1361d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1362d4002b98SHong Zhang     if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1);
1363d4002b98SHong Zhang #endif
1364d4002b98SHong Zhang     shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */
1365d4002b98SHong Zhang     cp    = a->colidx+shift; /* pointer to the row */
1366d4002b98SHong Zhang     vp    = a->val+shift; /* pointer to the row */
1367d4002b98SHong Zhang     nrow  = a->rlen[row];
1368d4002b98SHong Zhang     low   = 0;
1369d4002b98SHong Zhang     high  = nrow;
1370d4002b98SHong Zhang 
1371d4002b98SHong Zhang     for (l=0; l<n; l++) { /* loop over added columns */
1372d4002b98SHong Zhang       col = in[l];
1373d4002b98SHong Zhang       if (col<0) continue;
1374d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG)
1375d4002b98SHong Zhang       if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1);
1376d4002b98SHong Zhang #endif
1377d4002b98SHong Zhang       if (a->roworiented) {
1378d4002b98SHong Zhang         value = v[l+k*n];
1379d4002b98SHong Zhang       } else {
1380d4002b98SHong Zhang         value = v[k+l*m];
1381d4002b98SHong Zhang       }
1382d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1383d4002b98SHong Zhang 
1384d4002b98SHong Zhang       /* search in this row for the specified colmun, i indicates the column to be set */
1385d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1386d4002b98SHong Zhang       else high = nrow;
1387d4002b98SHong Zhang       lastcol = col;
1388d4002b98SHong Zhang       while (high-low > 5) {
1389d4002b98SHong Zhang         t = (low+high)/2;
1390d4002b98SHong Zhang         if (*(cp+t*8) > col) high = t;
1391d4002b98SHong Zhang         else low = t;
1392d4002b98SHong Zhang       }
1393d4002b98SHong Zhang       for (i=low; i<high; i++) {
1394d4002b98SHong Zhang         if (*(cp+i*8) > col) break;
1395d4002b98SHong Zhang         if (*(cp+i*8) == col) {
1396d4002b98SHong Zhang           if (is == ADD_VALUES) *(vp+i*8) += value;
1397d4002b98SHong Zhang           else *(vp+i*8) = value;
1398d4002b98SHong Zhang           low = i + 1;
1399d4002b98SHong Zhang           goto noinsert;
1400d4002b98SHong Zhang         }
1401d4002b98SHong Zhang       }
1402d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1403d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
1404d4002b98SHong Zhang       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1405d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
1406d4002b98SHong Zhang       MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar);
1407d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1408d4002b98SHong Zhang       for (ii=nrow-1; ii>=i; ii--) {
1409d4002b98SHong Zhang         *(cp+(ii+1)*8) = *(cp+ii*8);
1410d4002b98SHong Zhang         *(vp+(ii+1)*8) = *(vp+ii*8);
1411d4002b98SHong Zhang       }
1412d4002b98SHong Zhang       a->rlen[row]++;
1413d4002b98SHong Zhang       *(cp+i*8) = col;
1414d4002b98SHong Zhang       *(vp+i*8) = value;
1415d4002b98SHong Zhang       a->nz++;
1416d4002b98SHong Zhang       A->nonzerostate++;
1417d4002b98SHong Zhang       low = i+1; high++; nrow++;
1418d4002b98SHong Zhang noinsert:;
1419d4002b98SHong Zhang     }
1420d4002b98SHong Zhang     a->rlen[row] = nrow;
1421d4002b98SHong Zhang   }
1422d4002b98SHong Zhang   PetscFunctionReturn(0);
1423d4002b98SHong Zhang }
1424d4002b98SHong Zhang 
1425d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)
1426d4002b98SHong Zhang {
1427d4002b98SHong Zhang   PetscErrorCode ierr;
1428d4002b98SHong Zhang 
1429d4002b98SHong Zhang   PetscFunctionBegin;
1430d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1431d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1432d4002b98SHong Zhang     Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1433d4002b98SHong Zhang     Mat_SeqSELL *b=(Mat_SeqSELL*)B->data;
1434d4002b98SHong Zhang 
1435d4002b98SHong Zhang     if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
1436d4002b98SHong Zhang     ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1437d4002b98SHong Zhang   } else {
1438d4002b98SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1439d4002b98SHong Zhang   }
1440d4002b98SHong Zhang   PetscFunctionReturn(0);
1441d4002b98SHong Zhang }
1442d4002b98SHong Zhang 
1443d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A)
1444d4002b98SHong Zhang {
1445d4002b98SHong Zhang   PetscErrorCode ierr;
1446d4002b98SHong Zhang 
1447d4002b98SHong Zhang   PetscFunctionBegin;
1448d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr);
1449d4002b98SHong Zhang   PetscFunctionReturn(0);
1450d4002b98SHong Zhang }
1451d4002b98SHong Zhang 
1452d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[])
1453d4002b98SHong Zhang {
1454d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1455d4002b98SHong Zhang 
1456d4002b98SHong Zhang   PetscFunctionBegin;
1457d4002b98SHong Zhang   *array = a->val;
1458d4002b98SHong Zhang   PetscFunctionReturn(0);
1459d4002b98SHong Zhang }
1460d4002b98SHong Zhang 
1461d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[])
1462d4002b98SHong Zhang {
1463d4002b98SHong Zhang   PetscFunctionBegin;
1464d4002b98SHong Zhang   PetscFunctionReturn(0);
1465d4002b98SHong Zhang }
1466d4002b98SHong Zhang 
1467d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A)
1468d4002b98SHong Zhang {
1469d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
1470d4002b98SHong Zhang   PetscInt    i;
1471d4002b98SHong Zhang   MatScalar   *aval=a->val;
1472d4002b98SHong Zhang 
1473d4002b98SHong Zhang   PetscFunctionBegin;
1474d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]);
1475d4002b98SHong Zhang   PetscFunctionReturn(0);
1476d4002b98SHong Zhang }
1477d4002b98SHong Zhang 
1478d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1479d4002b98SHong Zhang {
1480d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)A->data;
1481d4002b98SHong Zhang   PetscInt       i;
1482d4002b98SHong Zhang   MatScalar      *aval=a->val;
1483d4002b98SHong Zhang   PetscErrorCode ierr;
1484d4002b98SHong Zhang 
1485d4002b98SHong Zhang   PetscFunctionBegin;
1486d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
1487d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr);
1488d4002b98SHong Zhang   PetscFunctionReturn(0);
1489d4002b98SHong Zhang }
1490d4002b98SHong Zhang 
1491d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha)
1492d4002b98SHong Zhang {
1493d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)inA->data;
1494d4002b98SHong Zhang   MatScalar      *aval=a->val;
1495d4002b98SHong Zhang   PetscScalar    oalpha=alpha;
1496d4002b98SHong Zhang   PetscBLASInt   one=1,size;
1497d4002b98SHong Zhang   PetscErrorCode ierr;
1498d4002b98SHong Zhang 
1499d4002b98SHong Zhang   PetscFunctionBegin;
1500d4002b98SHong Zhang   ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr);
1501d4002b98SHong Zhang   PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one));
1502d4002b98SHong Zhang   ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1503d4002b98SHong Zhang   ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr);
1504d4002b98SHong Zhang   PetscFunctionReturn(0);
1505d4002b98SHong Zhang }
1506d4002b98SHong Zhang 
1507d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a)
1508d4002b98SHong Zhang {
1509d4002b98SHong Zhang   Mat_SeqSELL    *y=(Mat_SeqSELL*)Y->data;
1510d4002b98SHong Zhang   PetscErrorCode ierr;
1511d4002b98SHong Zhang 
1512d4002b98SHong Zhang   PetscFunctionBegin;
1513d4002b98SHong Zhang   if (!Y->preallocated || !y->nz) {
1514d4002b98SHong Zhang     ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr);
1515d4002b98SHong Zhang   }
1516d4002b98SHong Zhang   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
1517d4002b98SHong Zhang   PetscFunctionReturn(0);
1518d4002b98SHong Zhang }
1519d4002b98SHong Zhang 
1520d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1521d4002b98SHong Zhang {
1522d4002b98SHong Zhang   Mat_SeqSELL       *a=(Mat_SeqSELL*)A->data;
1523d4002b98SHong Zhang   PetscScalar       *x,sum,*t;
1524d4002b98SHong Zhang   const MatScalar   *idiag=0,*mdiag;
1525d4002b98SHong Zhang   const PetscScalar *b,*xb;
1526d4002b98SHong Zhang   PetscInt          n,m=A->rmap->n,i,j,shift;
1527d4002b98SHong Zhang   const PetscInt    *diag;
1528d4002b98SHong Zhang   PetscErrorCode    ierr;
1529d4002b98SHong Zhang 
1530d4002b98SHong Zhang   PetscFunctionBegin;
1531d4002b98SHong Zhang   its = its*lits;
1532d4002b98SHong Zhang 
1533d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
1534d4002b98SHong Zhang   if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);}
1535d4002b98SHong Zhang   a->fshift = fshift;
1536d4002b98SHong Zhang   a->omega  = omega;
1537d4002b98SHong Zhang 
1538d4002b98SHong Zhang   diag  = a->diag;
1539d4002b98SHong Zhang   t     = a->ssor_work;
1540d4002b98SHong Zhang   idiag = a->idiag;
1541d4002b98SHong Zhang   mdiag = a->mdiag;
1542d4002b98SHong Zhang 
1543d4002b98SHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1544d4002b98SHong Zhang   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
1545d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
1546d4002b98SHong Zhang   if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented");
1547d4002b98SHong Zhang   if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented");
1548d4002b98SHong Zhang   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
1549d4002b98SHong Zhang 
1550d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1551d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1552d4002b98SHong Zhang       for (i=0; i<m; i++) {
1553d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1554d4002b98SHong Zhang         sum   = b[i];
1555d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1556d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1557d4002b98SHong Zhang         t[i]  = sum;
1558d4002b98SHong Zhang         x[i]  = sum*idiag[i];
1559d4002b98SHong Zhang       }
1560d4002b98SHong Zhang       xb   = t;
1561d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1562d4002b98SHong Zhang     } else xb = b;
1563d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1564d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1565d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1566d4002b98SHong Zhang         sum   = xb[i];
1567d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1568d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1569d4002b98SHong Zhang         if (xb == b) {
1570d4002b98SHong Zhang           x[i] = sum*idiag[i];
1571d4002b98SHong Zhang         } else {
1572d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1573d4002b98SHong Zhang         }
1574d4002b98SHong Zhang       }
1575d4002b98SHong Zhang       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1576d4002b98SHong Zhang     }
1577d4002b98SHong Zhang     its--;
1578d4002b98SHong Zhang   }
1579d4002b98SHong Zhang   while (its--) {
1580d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1581d4002b98SHong Zhang       for (i=0; i<m; i++) {
1582d4002b98SHong Zhang         /* lower */
1583d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1584d4002b98SHong Zhang         sum   = b[i];
1585d4002b98SHong Zhang         n     = (diag[i]-shift)/8;
1586d4002b98SHong Zhang         for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1587d4002b98SHong Zhang         t[i]  = sum;             /* save application of the lower-triangular part */
1588d4002b98SHong Zhang         /* upper */
1589d4002b98SHong Zhang         n     = a->rlen[i]-(diag[i]-shift)/8-1;
1590d4002b98SHong Zhang         for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1591d4002b98SHong Zhang         x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1592d4002b98SHong Zhang       }
1593d4002b98SHong Zhang       xb   = t;
1594d4002b98SHong Zhang       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1595d4002b98SHong Zhang     } else xb = b;
1596d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1597d4002b98SHong Zhang       for (i=m-1; i>=0; i--) {
1598d4002b98SHong Zhang         shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */
1599d4002b98SHong Zhang         sum = xb[i];
1600d4002b98SHong Zhang         if (xb == b) {
1601d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1602d4002b98SHong Zhang           n     = a->rlen[i];
1603d4002b98SHong Zhang           for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]];
1604d4002b98SHong Zhang           x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i];
1605d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
1606d4002b98SHong Zhang           n     = a->rlen[i]-(diag[i]-shift)/8-1;
1607d4002b98SHong Zhang           for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]];
1608d4002b98SHong Zhang           x[i]  = (1.-omega)*x[i]+sum*idiag[i];  /* omega in idiag */
1609d4002b98SHong Zhang         }
1610d4002b98SHong Zhang       }
1611d4002b98SHong Zhang       if (xb == b) {
1612d4002b98SHong Zhang         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
1613d4002b98SHong Zhang       } else {
1614d4002b98SHong Zhang         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */
1615d4002b98SHong Zhang       }
1616d4002b98SHong Zhang     }
1617d4002b98SHong Zhang   }
1618d4002b98SHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1619d4002b98SHong Zhang   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1620d4002b98SHong Zhang   PetscFunctionReturn(0);
1621d4002b98SHong Zhang }
1622d4002b98SHong Zhang 
1623d4002b98SHong Zhang /* -------------------------------------------------------------------*/
1624d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
1625d4002b98SHong Zhang                                        0,
1626d4002b98SHong Zhang                                        0,
1627d4002b98SHong Zhang                                        MatMult_SeqSELL,
1628d4002b98SHong Zhang                                /* 4*/  MatMultAdd_SeqSELL,
1629d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1630d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1631d4002b98SHong Zhang                                        0,
1632d4002b98SHong Zhang                                        0,
1633d4002b98SHong Zhang                                        0,
1634d4002b98SHong Zhang                                /* 10*/ 0,
1635d4002b98SHong Zhang                                        0,
1636d4002b98SHong Zhang                                        0,
1637d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1638d4002b98SHong Zhang                                        0,
1639d4002b98SHong Zhang                                /* 15*/ MatGetInfo_SeqSELL,
1640d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1641d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1642d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1643d4002b98SHong Zhang                                        0,
1644d4002b98SHong Zhang                                /* 20*/ 0,
1645d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1646d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1647d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1648d4002b98SHong Zhang                                /* 24*/ 0,
1649d4002b98SHong Zhang                                        0,
1650d4002b98SHong Zhang                                        0,
1651d4002b98SHong Zhang                                        0,
1652d4002b98SHong Zhang                                        0,
1653d4002b98SHong Zhang                                /* 29*/ MatSetUp_SeqSELL,
1654d4002b98SHong Zhang                                        0,
1655d4002b98SHong Zhang                                        0,
1656d4002b98SHong Zhang                                        0,
1657d4002b98SHong Zhang                                        0,
1658d4002b98SHong Zhang                                /* 34*/ MatDuplicate_SeqSELL,
1659d4002b98SHong Zhang                                        0,
1660d4002b98SHong Zhang                                        0,
1661d4002b98SHong Zhang                                        0,
1662d4002b98SHong Zhang                                        0,
1663d4002b98SHong Zhang                                /* 39*/ 0,
1664d4002b98SHong Zhang                                        0,
1665d4002b98SHong Zhang                                        0,
1666d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1667d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1668d4002b98SHong Zhang                                /* 44*/ 0,
1669d4002b98SHong Zhang                                        MatScale_SeqSELL,
1670d4002b98SHong Zhang                                        MatShift_SeqSELL,
1671d4002b98SHong Zhang                                        0,
1672d4002b98SHong Zhang                                        0,
1673d4002b98SHong Zhang                                /* 49*/ 0,
1674d4002b98SHong Zhang                                        0,
1675d4002b98SHong Zhang                                        0,
1676d4002b98SHong Zhang                                        0,
1677d4002b98SHong Zhang                                        0,
1678d4002b98SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
1679d4002b98SHong Zhang                                        0,
1680d4002b98SHong Zhang                                        0,
1681d4002b98SHong Zhang                                        0,
1682d4002b98SHong Zhang                                        0,
1683d4002b98SHong Zhang                                /* 59*/ 0,
1684d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1685d4002b98SHong Zhang                                        MatView_SeqSELL,
1686d4002b98SHong Zhang                                        0,
1687d4002b98SHong Zhang                                        0,
1688d4002b98SHong Zhang                                /* 64*/ 0,
1689d4002b98SHong Zhang                                        0,
1690d4002b98SHong Zhang                                        0,
1691d4002b98SHong Zhang                                        0,
1692d4002b98SHong Zhang                                        0,
1693d4002b98SHong Zhang                                /* 69*/ 0,
1694d4002b98SHong Zhang                                        0,
1695d4002b98SHong Zhang                                        0,
1696d4002b98SHong Zhang                                        0,
1697d4002b98SHong Zhang                                        0,
1698d4002b98SHong Zhang                                /* 74*/ 0,
1699d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1700d4002b98SHong Zhang                                        0,
1701d4002b98SHong Zhang                                        0,
1702d4002b98SHong Zhang                                        0,
1703d4002b98SHong Zhang                                /* 79*/ 0,
1704d4002b98SHong Zhang                                        0,
1705d4002b98SHong Zhang                                        0,
1706d4002b98SHong Zhang                                        0,
1707d4002b98SHong Zhang                                        0,
1708d4002b98SHong Zhang                                /* 84*/ 0,
1709d4002b98SHong Zhang                                        0,
1710d4002b98SHong Zhang                                        0,
1711d4002b98SHong Zhang                                        0,
1712d4002b98SHong Zhang                                        0,
1713d4002b98SHong Zhang                                /* 89*/ 0,
1714d4002b98SHong Zhang                                        0,
1715d4002b98SHong Zhang                                        0,
1716d4002b98SHong Zhang                                        0,
1717d4002b98SHong Zhang                                        0,
1718d4002b98SHong Zhang                                /* 94*/ 0,
1719d4002b98SHong Zhang                                        0,
1720d4002b98SHong Zhang                                        0,
1721d4002b98SHong Zhang                                        0,
1722d4002b98SHong Zhang                                        0,
1723d4002b98SHong Zhang                                /* 99*/ 0,
1724d4002b98SHong Zhang                                        0,
1725d4002b98SHong Zhang                                        0,
1726d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1727d4002b98SHong Zhang                                        0,
1728d4002b98SHong Zhang                                /*104*/ 0,
1729d4002b98SHong Zhang                                        0,
1730d4002b98SHong Zhang                                        0,
1731d4002b98SHong Zhang                                        0,
1732d4002b98SHong Zhang                                        0,
1733d4002b98SHong Zhang                                /*109*/ 0,
1734d4002b98SHong Zhang                                        0,
1735d4002b98SHong Zhang                                        0,
1736d4002b98SHong Zhang                                        0,
1737d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1738d4002b98SHong Zhang                                /*114*/ 0,
1739d4002b98SHong Zhang                                        0,
1740d4002b98SHong Zhang                                        0,
1741d4002b98SHong Zhang                                        0,
1742d4002b98SHong Zhang                                        0,
1743d4002b98SHong Zhang                                /*119*/ 0,
1744d4002b98SHong Zhang                                        0,
1745d4002b98SHong Zhang                                        0,
1746d4002b98SHong Zhang                                        0,
1747d4002b98SHong Zhang                                        0,
1748d4002b98SHong Zhang                                /*124*/ 0,
1749d4002b98SHong Zhang                                        0,
1750d4002b98SHong Zhang                                        0,
1751d4002b98SHong Zhang                                        0,
1752d4002b98SHong Zhang                                        0,
1753d4002b98SHong Zhang                                /*129*/ 0,
1754d4002b98SHong Zhang                                        0,
1755d4002b98SHong Zhang                                        0,
1756d4002b98SHong Zhang                                        0,
1757d4002b98SHong Zhang                                        0,
1758d4002b98SHong Zhang                                /*134*/ 0,
1759d4002b98SHong Zhang                                        0,
1760d4002b98SHong Zhang                                        0,
1761d4002b98SHong Zhang                                        0,
1762d4002b98SHong Zhang                                        0,
1763d4002b98SHong Zhang                                /*139*/ 0,
1764d4002b98SHong Zhang                                        0,
1765d4002b98SHong Zhang                                        0,
1766d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1767d4002b98SHong Zhang                                        0,
1768d4002b98SHong Zhang                                 /*144*/0
1769d4002b98SHong Zhang };
1770d4002b98SHong Zhang 
1771d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1772d4002b98SHong Zhang {
1773d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1774d4002b98SHong Zhang   PetscErrorCode ierr;
1775d4002b98SHong Zhang 
1776d4002b98SHong Zhang   PetscFunctionBegin;
1777d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1778d4002b98SHong Zhang 
1779d4002b98SHong Zhang   /* allocate space for values if not already there */
1780d4002b98SHong Zhang   if (!a->saved_values) {
1781d4002b98SHong Zhang     ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr);
1782d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr);
1783d4002b98SHong Zhang   }
1784d4002b98SHong Zhang 
1785d4002b98SHong Zhang   /* copy values over */
1786d4002b98SHong Zhang   ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1787d4002b98SHong Zhang   PetscFunctionReturn(0);
1788d4002b98SHong Zhang }
1789d4002b98SHong Zhang 
1790d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1791d4002b98SHong Zhang {
1792d4002b98SHong Zhang   Mat_SeqSELL    *a=(Mat_SeqSELL*)mat->data;
1793d4002b98SHong Zhang   PetscErrorCode ierr;
1794d4002b98SHong Zhang 
1795d4002b98SHong Zhang   PetscFunctionBegin;
1796d4002b98SHong Zhang   if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1797d4002b98SHong Zhang   if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
1798d4002b98SHong Zhang   /* copy values over */
1799d4002b98SHong Zhang   ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr);
1800d4002b98SHong Zhang   PetscFunctionReturn(0);
1801d4002b98SHong Zhang }
1802d4002b98SHong Zhang 
1803d4002b98SHong Zhang /*@C
1804d4002b98SHong Zhang  MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray()
1805d4002b98SHong Zhang 
1806d4002b98SHong Zhang  Not Collective
1807d4002b98SHong Zhang 
1808d4002b98SHong Zhang  Input Parameters:
1809d4002b98SHong Zhang  .  mat - a MATSEQSELL matrix
1810d4002b98SHong Zhang  .  array - pointer to the data
1811d4002b98SHong Zhang 
1812d4002b98SHong Zhang  Level: intermediate
1813d4002b98SHong Zhang 
1814d4002b98SHong Zhang  .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90()
1815d4002b98SHong Zhang  @*/
1816d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array)
1817d4002b98SHong Zhang {
1818d4002b98SHong Zhang   PetscErrorCode ierr;
1819d4002b98SHong Zhang 
1820d4002b98SHong Zhang   PetscFunctionBegin;
1821d4002b98SHong Zhang   ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
1822d4002b98SHong Zhang   PetscFunctionReturn(0);
1823d4002b98SHong Zhang }
1824d4002b98SHong Zhang 
1825d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
1826d4002b98SHong Zhang {
1827d4002b98SHong Zhang   Mat_SeqSELL    *b;
1828d4002b98SHong Zhang   PetscMPIInt    size;
1829d4002b98SHong Zhang   PetscErrorCode ierr;
1830d4002b98SHong Zhang 
1831d4002b98SHong Zhang   PetscFunctionBegin;
1832d4002b98SHong Zhang   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
1833d4002b98SHong Zhang   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1");
1834d4002b98SHong Zhang 
1835d4002b98SHong Zhang   ierr = PetscNewLog(B,&b);CHKERRQ(ierr);
1836d4002b98SHong Zhang 
1837d4002b98SHong Zhang   B->data = (void*)b;
1838d4002b98SHong Zhang 
1839d4002b98SHong Zhang   ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1840d4002b98SHong Zhang 
1841d4002b98SHong Zhang   b->row                = 0;
1842d4002b98SHong Zhang   b->col                = 0;
1843d4002b98SHong Zhang   b->icol               = 0;
1844d4002b98SHong Zhang   b->reallocs           = 0;
1845d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
1846d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
1847d4002b98SHong Zhang   b->nonew              = 0;
1848d4002b98SHong Zhang   b->diag               = 0;
1849d4002b98SHong Zhang   b->solve_work         = 0;
1850d4002b98SHong Zhang   B->spptr              = 0;
1851d4002b98SHong Zhang   b->saved_values       = 0;
1852d4002b98SHong Zhang   b->idiag              = 0;
1853d4002b98SHong Zhang   b->mdiag              = 0;
1854d4002b98SHong Zhang   b->ssor_work          = 0;
1855d4002b98SHong Zhang   b->omega              = 1.0;
1856d4002b98SHong Zhang   b->fshift             = 0.0;
1857d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
1858d4002b98SHong Zhang   b->ibdiagvalid        = PETSC_FALSE;
1859d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
1860d4002b98SHong Zhang 
1861d4002b98SHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr);
1862d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr);
1863d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr);
1864d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr);
1865d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr);
1866d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr);
1867d4002b98SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr);
1868d4002b98SHong Zhang   PetscFunctionReturn(0);
1869d4002b98SHong Zhang }
1870d4002b98SHong Zhang 
1871d4002b98SHong Zhang /*
1872d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
1873d4002b98SHong Zhang  */
1874d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
1875d4002b98SHong Zhang {
1876d4002b98SHong Zhang   Mat_SeqSELL    *c,*a=(Mat_SeqSELL*)A->data;
1877d4002b98SHong Zhang   PetscInt       i,m=A->rmap->n;
1878d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
1879d4002b98SHong Zhang   PetscErrorCode ierr;
1880d4002b98SHong Zhang 
1881d4002b98SHong Zhang   PetscFunctionBegin;
1882d4002b98SHong Zhang   c = (Mat_SeqSELL*)C->data;
1883d4002b98SHong Zhang 
1884d4002b98SHong Zhang   C->factortype = A->factortype;
1885d4002b98SHong Zhang   c->row        = 0;
1886d4002b98SHong Zhang   c->col        = 0;
1887d4002b98SHong Zhang   c->icol       = 0;
1888d4002b98SHong Zhang   c->reallocs   = 0;
1889d4002b98SHong Zhang 
1890d4002b98SHong Zhang   C->assembled = PETSC_TRUE;
1891d4002b98SHong Zhang 
1892d4002b98SHong Zhang   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
1893d4002b98SHong Zhang   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
1894d4002b98SHong Zhang 
1895d4002b98SHong Zhang   ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr);
1896d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
1897d4002b98SHong Zhang   ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr);
1898d4002b98SHong Zhang   ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr);
1899d4002b98SHong Zhang 
1900d4002b98SHong Zhang   for (i=0; i<m; i++) c->rlen[i] = a->rlen[i];
1901d4002b98SHong Zhang   for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i];
1902d4002b98SHong Zhang 
1903d4002b98SHong Zhang   /* allocate the matrix space */
1904d4002b98SHong Zhang   if (mallocmatspace) {
1905d4002b98SHong Zhang     ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr);
1906d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
1907d4002b98SHong Zhang 
1908d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
1909d4002b98SHong Zhang 
1910d4002b98SHong Zhang     if (m > 0) {
1911d4002b98SHong Zhang       ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr);
1912d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
1913d4002b98SHong Zhang         ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
1914d4002b98SHong Zhang       } else {
1915d4002b98SHong Zhang         ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr);
1916d4002b98SHong Zhang       }
1917d4002b98SHong Zhang     }
1918d4002b98SHong Zhang   }
1919d4002b98SHong Zhang 
1920d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
1921d4002b98SHong Zhang   c->roworiented       = a->roworiented;
1922d4002b98SHong Zhang   c->nonew             = a->nonew;
1923d4002b98SHong Zhang   if (a->diag) {
1924d4002b98SHong Zhang     ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr);
1925d4002b98SHong Zhang     ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr);
1926d4002b98SHong Zhang     for (i=0; i<m; i++) {
1927d4002b98SHong Zhang       c->diag[i] = a->diag[i];
1928d4002b98SHong Zhang     }
1929d4002b98SHong Zhang   } else c->diag = 0;
1930d4002b98SHong Zhang 
1931d4002b98SHong Zhang   c->solve_work         = 0;
1932d4002b98SHong Zhang   c->saved_values       = 0;
1933d4002b98SHong Zhang   c->idiag              = 0;
1934d4002b98SHong Zhang   c->ssor_work          = 0;
1935d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
1936d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
1937d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
1938d4002b98SHong Zhang 
1939d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
1940d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
1941d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
1942d4002b98SHong Zhang   c->nz           = a->nz;
1943d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
1944d4002b98SHong Zhang 
1945d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
1946d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
1947d4002b98SHong Zhang 
1948d4002b98SHong Zhang   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
1949d4002b98SHong Zhang   PetscFunctionReturn(0);
1950d4002b98SHong Zhang }
1951d4002b98SHong Zhang 
1952d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B)
1953d4002b98SHong Zhang {
1954d4002b98SHong Zhang   PetscErrorCode ierr;
1955d4002b98SHong Zhang 
1956d4002b98SHong Zhang   PetscFunctionBegin;
1957d4002b98SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
1958d4002b98SHong Zhang   ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1959d4002b98SHong Zhang   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) {
1960d4002b98SHong Zhang     ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr);
1961d4002b98SHong Zhang   }
1962d4002b98SHong Zhang   ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1963d4002b98SHong Zhang   ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
1964d4002b98SHong Zhang   PetscFunctionReturn(0);
1965d4002b98SHong Zhang }
1966d4002b98SHong Zhang 
1967d4002b98SHong Zhang /*@C
1968d4002b98SHong Zhang  MatCreateSeqSELL - Creates a sparse matrix in SELL format.
1969d4002b98SHong Zhang 
1970d4002b98SHong Zhang  Collective on MPI_Comm
1971d4002b98SHong Zhang 
1972d4002b98SHong Zhang  Input Parameters:
1973d4002b98SHong Zhang  +  comm - MPI communicator, set to PETSC_COMM_SELF
1974d4002b98SHong Zhang  .  m - number of rows
1975d4002b98SHong Zhang  .  n - number of columns
1976d4002b98SHong Zhang  .  rlenmax - maximum number of nonzeros in a row
1977d4002b98SHong Zhang  -  rlen - array containing the number of nonzeros in the various rows
1978d4002b98SHong Zhang  (possibly different for each row) or NULL
1979d4002b98SHong Zhang 
1980d4002b98SHong Zhang  Output Parameter:
1981d4002b98SHong Zhang  .  A - the matrix
1982d4002b98SHong Zhang 
1983d4002b98SHong Zhang  It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
1984d4002b98SHong Zhang  MatXXXXSetPreallocation() paradgm instead of this routine directly.
1985d4002b98SHong Zhang  [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation]
1986d4002b98SHong Zhang 
1987d4002b98SHong Zhang  Notes:
1988d4002b98SHong Zhang  If nnz is given then nz is ignored
1989d4002b98SHong Zhang 
1990d4002b98SHong Zhang  Specify the preallocated storage with either rlenmax or rlen (not both).
1991d4002b98SHong Zhang  Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory
1992d4002b98SHong Zhang  allocation.  For large problems you MUST preallocate memory or you
1993d4002b98SHong Zhang  will get TERRIBLE performance, see the users' manual chapter on matrices.
1994d4002b98SHong Zhang 
1995d4002b98SHong Zhang  Level: intermediate
1996d4002b98SHong Zhang 
1997d4002b98SHong Zhang  .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays()
1998d4002b98SHong Zhang 
1999d4002b98SHong Zhang  @*/
2000d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A)
2001d4002b98SHong Zhang {
2002d4002b98SHong Zhang   PetscErrorCode ierr;
2003d4002b98SHong Zhang 
2004d4002b98SHong Zhang   PetscFunctionBegin;
2005d4002b98SHong Zhang   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2006d4002b98SHong Zhang   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2007d4002b98SHong Zhang   ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr);
2008d4002b98SHong Zhang   ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr);
2009d4002b98SHong Zhang   PetscFunctionReturn(0);
2010d4002b98SHong Zhang }
2011d4002b98SHong Zhang 
2012d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)
2013d4002b98SHong Zhang {
2014d4002b98SHong Zhang   Mat_SeqSELL     *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data;
2015d4002b98SHong Zhang   PetscInt       totalslices=a->totalslices;
2016d4002b98SHong Zhang   PetscErrorCode ierr;
2017d4002b98SHong Zhang 
2018d4002b98SHong Zhang   PetscFunctionBegin;
2019d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2020d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2021d4002b98SHong Zhang     *flg = PETSC_FALSE;
2022d4002b98SHong Zhang     PetscFunctionReturn(0);
2023d4002b98SHong Zhang   }
2024d4002b98SHong Zhang   /* if the a->colidx are the same */
2025d4002b98SHong Zhang   ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr);
2026d4002b98SHong Zhang   if (!*flg) PetscFunctionReturn(0);
2027d4002b98SHong Zhang   /* if a->val are the same */
2028d4002b98SHong Zhang   ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr);
2029d4002b98SHong Zhang   PetscFunctionReturn(0);
2030d4002b98SHong Zhang }
2031d4002b98SHong Zhang 
2032d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2033d4002b98SHong Zhang {
2034d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2035d4002b98SHong Zhang 
2036d4002b98SHong Zhang   PetscFunctionBegin;
2037d4002b98SHong Zhang   a->idiagvalid  = PETSC_FALSE;
2038d4002b98SHong Zhang   a->ibdiagvalid = PETSC_FALSE;
2039d4002b98SHong Zhang   PetscFunctionReturn(0);
2040d4002b98SHong Zhang }
2041d4002b98SHong Zhang 
2042d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A)
2043d4002b98SHong Zhang {
2044d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2045d4002b98SHong Zhang   Mat_SeqSELL *a=(Mat_SeqSELL*)A->data;
2046d4002b98SHong Zhang   PetscInt    i;
2047d4002b98SHong Zhang   PetscScalar *val = a->val;
2048d4002b98SHong Zhang 
2049d4002b98SHong Zhang   PetscFunctionBegin;
2050d4002b98SHong Zhang   for (i=0; i<a->sliidx[a->totalslices]; i++) {
2051d4002b98SHong Zhang     val[i] = PetscConj(val[i]);
2052d4002b98SHong Zhang   }
2053d4002b98SHong Zhang #else
2054d4002b98SHong Zhang   PetscFunctionBegin;
2055d4002b98SHong Zhang #endif
2056d4002b98SHong Zhang   PetscFunctionReturn(0);
2057d4002b98SHong Zhang }
2058