1d4002b98SHong Zhang /* 2d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 3d4002b98SHong Zhang */ 4d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 5d4002b98SHong Zhang #include <petscblaslapack.h> 6d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 7ed73aabaSBarry Smith 8ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE; 99371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n" 10ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n" 11ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n" 12ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n" 13ed73aabaSBarry Smith " year = 2018\n" 14ed73aabaSBarry Smith "}\n"; 15ed73aabaSBarry Smith 165f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 174243e2ceSHong Zhang 18d4002b98SHong Zhang #include <immintrin.h> 19d4002b98SHong Zhang 20d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 21d4002b98SHong Zhang #define _MM_SCALE_8 8 22d4002b98SHong Zhang #endif 23d4002b98SHong Zhang 24d4002b98SHong Zhang #if defined(__AVX512F__) 25d4002b98SHong Zhang /* these do not work 26d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 27d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 28d4002b98SHong Zhang */ 29d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \ 30d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 31ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const *)acolidx); \ 32ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 33d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \ 34a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x, vec_vals, vec_y) 355f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 36a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \ 37ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 38ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \ 39a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \ 40a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x, vec_vals, vec_y) 41d4002b98SHong Zhang #endif 42d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 43d4002b98SHong Zhang 44d4002b98SHong Zhang /*@C 45d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 4620f4b53cSBarry Smith the user should preallocate the matrix storage by setting the parameter `nz` 4720f4b53cSBarry Smith (or the array `nnz`). 48d4002b98SHong Zhang 49d083f849SBarry Smith Collective 50d4002b98SHong Zhang 51d4002b98SHong Zhang Input Parameters: 5211a5261eSBarry Smith + B - The `MATSEQSELL` matrix 5320f4b53cSBarry Smith . rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided 5420f4b53cSBarry Smith - rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL` 5567be906fSBarry Smith 5667be906fSBarry Smith Level: intermediate 57d4002b98SHong Zhang 58d4002b98SHong Zhang Notes: 5967be906fSBarry Smith Specify the preallocated storage with either `rlenmax` or `rlen` (not both). 6067be906fSBarry Smith Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory 6120f4b53cSBarry Smith allocation. 62d4002b98SHong Zhang 6311a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 64d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 6567be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 66d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 67d4002b98SHong Zhang 68fe59aa6dSJacob Faibussowitsch Developer Notes: 6967be906fSBarry Smith Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix 70d4002b98SHong Zhang entries or columns indices. 71d4002b98SHong Zhang 72c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible. 73c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation 7467be906fSBarry Smith (`MatSeqXSELLReallocateSELL()`). 75d4002b98SHong Zhang 7667be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()` 77d4002b98SHong Zhang @*/ 78d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[]) 79d71ae5a4SJacob Faibussowitsch { 80d4002b98SHong Zhang PetscFunctionBegin; 81d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 82d4002b98SHong Zhang PetscValidType(B, 1); 83cac4c232SBarry Smith PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen)); 843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85d4002b98SHong Zhang } 86d4002b98SHong Zhang 87d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[]) 88d71ae5a4SJacob Faibussowitsch { 89d4002b98SHong Zhang Mat_SeqSELL *b; 90d4002b98SHong Zhang PetscInt i, j, totalslices; 91*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 924e58db63SHong Zhang PetscInt rlenmax = 0; 934e58db63SHong Zhang #endif 94d4002b98SHong Zhang PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE; 95d4002b98SHong Zhang 96d4002b98SHong Zhang PetscFunctionBegin; 97d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 98d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 99d4002b98SHong Zhang skipallocation = PETSC_TRUE; 100d4002b98SHong Zhang maxallocrow = 0; 101d4002b98SHong Zhang } 102d4002b98SHong Zhang 1039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 1049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 105d4002b98SHong Zhang 106d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 107d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 10808401ef6SPierre Jolivet PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow); 109d4002b98SHong Zhang if (rlen) { 110d4002b98SHong Zhang for (i = 0; i < B->rmap->n; i++) { 11108401ef6SPierre Jolivet PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]); 11208401ef6SPierre Jolivet PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n); 113d4002b98SHong Zhang } 114d4002b98SHong Zhang } 115d4002b98SHong Zhang 116d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 117d4002b98SHong Zhang 118d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data; 119d4002b98SHong Zhang 12007e43b41SHong Zhang if (!b->sliceheight) { /* not set yet */ 121*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 12207e43b41SHong Zhang b->sliceheight = 16; 12307e43b41SHong Zhang #else 12407e43b41SHong Zhang b->sliceheight = 8; 12507e43b41SHong Zhang #endif 12607e43b41SHong Zhang } 12707e43b41SHong Zhang totalslices = PetscCeilInt(B->rmap->n, b->sliceheight); 128d4002b98SHong Zhang b->totalslices = totalslices; 129d4002b98SHong Zhang if (!skipallocation) { 13007e43b41SHong Zhang if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n)); 131d4002b98SHong Zhang 132d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 1339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx)); 134d4002b98SHong Zhang } 135d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 136d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 137d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 138*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 1394e58db63SHong Zhang rlenmax = maxallocrow; 1404e58db63SHong Zhang /* Pad the slice to DEVICE_MEM_ALIGN */ 1414e58db63SHong Zhang while (b->sliceheight * maxallocrow % DEVICE_MEM_ALIGN) maxallocrow++; 1424e58db63SHong Zhang #endif 14307e43b41SHong Zhang for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow; 144d4002b98SHong Zhang } else { 145*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 1464e58db63SHong Zhang PetscInt mul = DEVICE_MEM_ALIGN / b->sliceheight; 1474e58db63SHong Zhang #endif 148d4002b98SHong Zhang maxallocrow = 0; 149d4002b98SHong Zhang b->sliidx[0] = 0; 150d4002b98SHong Zhang for (i = 1; i < totalslices; i++) { 151d4002b98SHong Zhang b->sliidx[i] = 0; 15207e43b41SHong Zhang for (j = 0; j < b->sliceheight; j++) { b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]); } 153*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 154*773bf0f6SHong Zhang if (mul != 0) { /* Pad the slice to DEVICE_MEM_ALIGN if sliceheight < DEVICE_MEM_ALIGN */ 1554e58db63SHong Zhang rlenmax = PetscMax(b->sliidx[i], rlenmax); 1564e58db63SHong Zhang b->sliidx[i] = ((b->sliidx[i] - 1) / mul + 1) * mul; 157*773bf0f6SHong Zhang } 1584e58db63SHong Zhang #endif 159d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i], maxallocrow); 16007e43b41SHong Zhang PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i])); 161d4002b98SHong Zhang } 162d4002b98SHong Zhang /* last slice */ 163d4002b98SHong Zhang b->sliidx[totalslices] = 0; 16407e43b41SHong Zhang for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]); 165*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 166*773bf0f6SHong Zhang if (mul != 0) { 1674e58db63SHong Zhang rlenmax = PetscMax(b->sliidx[i], rlenmax); 1684e58db63SHong Zhang b->sliidx[totalslices] = ((b->sliidx[totalslices] - 1) / mul + 1) * mul; 169*773bf0f6SHong Zhang } 1704e58db63SHong Zhang #endif 171d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices], maxallocrow); 17207e43b41SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices]; 173d4002b98SHong Zhang } 174d4002b98SHong Zhang 175d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 176d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 1779566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx)); 178d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 1799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx)); 180d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 18107e43b41SHong Zhang PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen)); 182d4002b98SHong Zhang 183d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 184d4002b98SHong Zhang b->free_val = PETSC_TRUE; 185d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 186d4002b98SHong Zhang } else { 187d4002b98SHong Zhang b->free_val = PETSC_FALSE; 188d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 189d4002b98SHong Zhang } 190d4002b98SHong Zhang 191d4002b98SHong Zhang b->nz = 0; 192d4002b98SHong Zhang b->maxallocrow = maxallocrow; 193*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 1944e58db63SHong Zhang b->rlenmax = rlenmax; 1954e58db63SHong Zhang #else 196d4002b98SHong Zhang b->rlenmax = maxallocrow; 1974e58db63SHong Zhang #endif 198d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 199d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 2001baa6e33SBarry Smith if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 2013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 202d4002b98SHong Zhang } 203d4002b98SHong Zhang 204ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 205d71ae5a4SJacob Faibussowitsch { 2066108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2076108893eSStefano Zampini PetscInt shift; 2086108893eSStefano Zampini 2096108893eSStefano Zampini PetscFunctionBegin; 210aed4548fSBarry Smith PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row); 2116108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 21207e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); 2132d1451d4SHong Zhang if (!a->getrowcols) { PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals)); } 2146108893eSStefano Zampini if (idx) { 2156108893eSStefano Zampini PetscInt j; 21607e43b41SHong Zhang for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j]; 2176108893eSStefano Zampini *idx = a->getrowcols; 2186108893eSStefano Zampini } 2196108893eSStefano Zampini if (v) { 2206108893eSStefano Zampini PetscInt j; 22107e43b41SHong Zhang for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j]; 2226108893eSStefano Zampini *v = a->getrowvals; 2236108893eSStefano Zampini } 2243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2256108893eSStefano Zampini } 2266108893eSStefano Zampini 227ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 228d71ae5a4SJacob Faibussowitsch { 2296108893eSStefano Zampini PetscFunctionBegin; 2303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2316108893eSStefano Zampini } 2326108893eSStefano Zampini 233d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 234d71ae5a4SJacob Faibussowitsch { 235d4002b98SHong Zhang Mat B; 236d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 237e3f1f374SStefano Zampini PetscInt i; 238d4002b98SHong Zhang 239d4002b98SHong Zhang PetscFunctionBegin; 240ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 241ad013a7bSRichard Tran Mills B = *newmat; 2429566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 243ad013a7bSRichard Tran Mills } else { 2449566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 2469566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 2479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen)); 248ad013a7bSRichard Tran Mills } 249d4002b98SHong Zhang 250e3f1f374SStefano Zampini for (i = 0; i < A->rmap->n; i++) { 251e108cb99SStefano Zampini PetscInt nz = 0, *cols = NULL; 252e108cb99SStefano Zampini PetscScalar *vals = NULL; 253e3f1f374SStefano Zampini 2549566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals)); 2559566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES)); 2569566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals)); 257d4002b98SHong Zhang } 258e3f1f374SStefano Zampini 2599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 2609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 261d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 262d4002b98SHong Zhang 263d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 2649566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 265d4002b98SHong Zhang } else { 266d4002b98SHong Zhang *newmat = B; 267d4002b98SHong Zhang } 2683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 269d4002b98SHong Zhang } 270d4002b98SHong Zhang 271d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 272d4002b98SHong Zhang 273d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 274d71ae5a4SJacob Faibussowitsch { 275d4002b98SHong Zhang Mat B; 276d4002b98SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 277d4002b98SHong Zhang PetscInt *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols; 278d4002b98SHong Zhang const PetscInt *cols; 279d4002b98SHong Zhang const PetscScalar *vals; 280d4002b98SHong Zhang 281d4002b98SHong Zhang PetscFunctionBegin; 282ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 283ad013a7bSRichard Tran Mills B = *newmat; 284ad013a7bSRichard Tran Mills } else { 285d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) { 2869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlengths)); 287ad540459SPierre Jolivet for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i]; 288d5e5b2e5SBarry Smith } 289d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) { 290d5e5b2e5SBarry Smith PetscBool eq; 2919566063dSJacob Faibussowitsch PetscCall(PetscMemcmp(rowlengths, a->ilen, m * sizeof(PetscInt), &eq)); 29228b400f6SJacob Faibussowitsch PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect"); 2939566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlengths)); 294d5e5b2e5SBarry Smith rowlengths = a->ilen; 295d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen; 2969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 2979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, n, m, n)); 2989566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQSELL)); 2999566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths)); 3009566063dSJacob Faibussowitsch if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths)); 301ad013a7bSRichard Tran Mills } 302d4002b98SHong Zhang 303d4002b98SHong Zhang for (row = 0; row < m; row++) { 3049566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals)); 3059566063dSJacob Faibussowitsch PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES)); 3069566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals)); 307d4002b98SHong Zhang } 3089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 3099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 310d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 311d4002b98SHong Zhang 312d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 3139566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 314d4002b98SHong Zhang } else { 315d4002b98SHong Zhang *newmat = B; 316d4002b98SHong Zhang } 3173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 318d4002b98SHong Zhang } 319d4002b98SHong Zhang 320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy) 321d71ae5a4SJacob Faibussowitsch { 322d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 323d4002b98SHong Zhang PetscScalar *y; 324d4002b98SHong Zhang const PetscScalar *x; 325d4002b98SHong Zhang const MatScalar *aval = a->val; 326d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 327d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 3287285fed1SHong Zhang PetscInt i, j; 329d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 330d4002b98SHong Zhang __m512d vec_x, vec_y, vec_vals; 331d4002b98SHong Zhang __m256i vec_idx; 332d4002b98SHong Zhang __mmask8 mask; 333d4002b98SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4; 334d4002b98SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4; 3355f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 336a48a6482SHong Zhang __m128i vec_idx; 337a48a6482SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 338a48a6482SHong Zhang MatScalar yval; 339a48a6482SHong Zhang PetscInt r, rows_left, row, nnz_in_row; 34021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 341d4002b98SHong Zhang __m128d vec_x_tmp; 342d4002b98SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 343d4002b98SHong Zhang MatScalar yval; 344d4002b98SHong Zhang PetscInt r, rows_left, row, nnz_in_row; 345d4002b98SHong Zhang #else 34607e43b41SHong Zhang PetscInt k, sliceheight = a->sliceheight; 34707e43b41SHong Zhang PetscScalar *sum; 348d4002b98SHong Zhang #endif 349d4002b98SHong Zhang 350d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 351d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 352d4002b98SHong Zhang #endif 353d4002b98SHong Zhang 354d4002b98SHong Zhang PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 3569566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 357d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 35807e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 359d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 360d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 361d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 362d4002b98SHong Zhang 363d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 364d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 365d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 366d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 367d4002b98SHong Zhang 368da81f932SPierre Jolivet j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */ 369d4002b98SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) { 370d4002b98SHong Zhang case 3: 371d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3729371c9d4SSatish Balay acolidx += 8; 3739371c9d4SSatish Balay aval += 8; 374d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3759371c9d4SSatish Balay acolidx += 8; 3769371c9d4SSatish Balay aval += 8; 377d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 3789371c9d4SSatish Balay acolidx += 8; 3799371c9d4SSatish Balay aval += 8; 380d4002b98SHong Zhang j += 3; 381d4002b98SHong Zhang break; 382d4002b98SHong Zhang case 2: 383d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3849371c9d4SSatish Balay acolidx += 8; 3859371c9d4SSatish Balay aval += 8; 386d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 3879371c9d4SSatish Balay acolidx += 8; 3889371c9d4SSatish Balay aval += 8; 389d4002b98SHong Zhang j += 2; 390d4002b98SHong Zhang break; 391d4002b98SHong Zhang case 1: 392d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 3939371c9d4SSatish Balay acolidx += 8; 3949371c9d4SSatish Balay aval += 8; 395d4002b98SHong Zhang j += 1; 396d4002b98SHong Zhang break; 397d4002b98SHong Zhang } 398d4002b98SHong Zhang #pragma novector 399d4002b98SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) { 400d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 4019371c9d4SSatish Balay acolidx += 8; 4029371c9d4SSatish Balay aval += 8; 403d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 4049371c9d4SSatish Balay acolidx += 8; 4059371c9d4SSatish Balay aval += 8; 406d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 4079371c9d4SSatish Balay acolidx += 8; 4089371c9d4SSatish Balay aval += 8; 409d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4); 4109371c9d4SSatish Balay acolidx += 8; 4119371c9d4SSatish Balay aval += 8; 412d4002b98SHong Zhang } 413d4002b98SHong Zhang 414d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2); 415d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3); 416d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4); 417d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 418d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07))); 419ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y); 420d4002b98SHong Zhang } else { 421ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8 * i], vec_y); 422d4002b98SHong Zhang } 423d4002b98SHong Zhang } 4245f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 42507e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 426a48a6482SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 427a48a6482SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 428a48a6482SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 429a48a6482SHong Zhang 430a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 431a48a6482SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 432a48a6482SHong Zhang rows_left = A->rmap->n - 8 * i; 433a48a6482SHong Zhang for (r = 0; r < rows_left; ++r) { 434a48a6482SHong Zhang yval = (MatScalar)0; 435a48a6482SHong Zhang row = 8 * i + r; 436a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 437a48a6482SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 438a48a6482SHong Zhang y[row] = yval; 439a48a6482SHong Zhang } 440a48a6482SHong Zhang break; 441a48a6482SHong Zhang } 442a48a6482SHong Zhang 443a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 444a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 445a48a6482SHong Zhang 446a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 447a48a6482SHong Zhang #pragma novector 448a48a6482SHong Zhang #pragma unroll(2) 449a48a6482SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 450a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 4519371c9d4SSatish Balay aval += 4; 4529371c9d4SSatish Balay acolidx += 4; 453a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2); 4549371c9d4SSatish Balay aval += 4; 4559371c9d4SSatish Balay acolidx += 4; 456a48a6482SHong Zhang } 457a48a6482SHong Zhang 458ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8, vec_y); 459ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8 + 4, vec_y2); 460a48a6482SHong Zhang } 46121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 46207e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 463d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 464d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 465d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 466d4002b98SHong Zhang 467d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 468d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 469d4002b98SHong Zhang 470d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 471d4002b98SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 472d4002b98SHong Zhang rows_left = A->rmap->n - 8 * i; 473d4002b98SHong Zhang for (r = 0; r < rows_left; ++r) { 474d4002b98SHong Zhang yval = (MatScalar)0; 475d4002b98SHong Zhang row = 8 * i + r; 476d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 477d4002b98SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 478d4002b98SHong Zhang y[row] = yval; 479d4002b98SHong Zhang } 480d4002b98SHong Zhang break; 481d4002b98SHong Zhang } 482d4002b98SHong Zhang 483d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 484a48a6482SHong Zhang #pragma novector 485a48a6482SHong Zhang #pragma unroll(2) 4867285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 487d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 488165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 489d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 490d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 491d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 492d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 493d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 494d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 495d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y); 496d4002b98SHong Zhang aval += 4; 497d4002b98SHong Zhang 498d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 499d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 500d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 501d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 502d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 503d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 504d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 505d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2); 506d4002b98SHong Zhang aval += 4; 507d4002b98SHong Zhang } 508d4002b98SHong Zhang 509d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8, vec_y); 510d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8 + 4, vec_y2); 511d4002b98SHong Zhang } 512d4002b98SHong Zhang #else 51307e43b41SHong Zhang PetscCall(PetscMalloc1(sliceheight, &sum)); 514d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 51507e43b41SHong Zhang for (j = 0; j < sliceheight; j++) { 5162d1451d4SHong Zhang sum[j] = 0.0; 51707e43b41SHong Zhang for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]]; 518d4002b98SHong Zhang } 51907e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */ 52007e43b41SHong Zhang for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j]; 521d4002b98SHong Zhang } else { 52207e43b41SHong Zhang for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j]; 523d4002b98SHong Zhang } 524d4002b98SHong Zhang } 52507e43b41SHong Zhang PetscCall(PetscFree(sum)); 526d4002b98SHong Zhang #endif 527d4002b98SHong Zhang 5289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */ 5299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 5309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 5313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 532d4002b98SHong Zhang } 533d4002b98SHong Zhang 534d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz) 536d71ae5a4SJacob Faibussowitsch { 537d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 538d4002b98SHong Zhang PetscScalar *y, *z; 539d4002b98SHong Zhang const PetscScalar *x; 540d4002b98SHong Zhang const MatScalar *aval = a->val; 541d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 542d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 543d4002b98SHong Zhang PetscInt i, j; 544d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5457285fed1SHong Zhang __m512d vec_x, vec_y, vec_vals; 546d4002b98SHong Zhang __m256i vec_idx; 5475ea36cfaSSatish Balay __mmask8 mask = 0; 5487285fed1SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4; 5497285fed1SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4; 55021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5517285fed1SHong Zhang __m128d vec_x_tmp; 5527285fed1SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals; 5537285fed1SHong Zhang MatScalar yval; 5547285fed1SHong Zhang PetscInt r, row, nnz_in_row; 555d4002b98SHong Zhang #else 55607e43b41SHong Zhang PetscInt k, sliceheight = a->sliceheight; 55707e43b41SHong Zhang PetscScalar *sum; 558d4002b98SHong Zhang #endif 559d4002b98SHong Zhang 560d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 561d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 562d4002b98SHong Zhang #endif 563d4002b98SHong Zhang 564d4002b98SHong Zhang PetscFunctionBegin; 5652d1451d4SHong Zhang if (!a->nz) { 5662d1451d4SHong Zhang PetscCall(VecCopy(yy, zz)); 5672d1451d4SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 5682d1451d4SHong Zhang } 5699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 5709566063dSJacob Faibussowitsch PetscCall(VecGetArrayPair(yy, zz, &y, &z)); 571d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 57207e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 5737285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 5747285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 5757285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 5767285fed1SHong Zhang 577d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 578d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07))); 579ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]); 5807285fed1SHong Zhang } else { 581ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8 * i]); 5827285fed1SHong Zhang } 5837285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5847285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5857285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5867285fed1SHong Zhang 587da81f932SPierre Jolivet j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */ 5887285fed1SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) { 5897285fed1SHong Zhang case 3: 5907285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 5919371c9d4SSatish Balay acolidx += 8; 5929371c9d4SSatish Balay aval += 8; 5937285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 5949371c9d4SSatish Balay acolidx += 8; 5959371c9d4SSatish Balay aval += 8; 5967285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 5979371c9d4SSatish Balay acolidx += 8; 5989371c9d4SSatish Balay aval += 8; 5997285fed1SHong Zhang j += 3; 6007285fed1SHong Zhang break; 6017285fed1SHong Zhang case 2: 6027285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 6039371c9d4SSatish Balay acolidx += 8; 6049371c9d4SSatish Balay aval += 8; 6057285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 6069371c9d4SSatish Balay acolidx += 8; 6079371c9d4SSatish Balay aval += 8; 6087285fed1SHong Zhang j += 2; 6097285fed1SHong Zhang break; 6107285fed1SHong Zhang case 1: 6117285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 6129371c9d4SSatish Balay acolidx += 8; 6139371c9d4SSatish Balay aval += 8; 6147285fed1SHong Zhang j += 1; 6157285fed1SHong Zhang break; 6167285fed1SHong Zhang } 6177285fed1SHong Zhang #pragma novector 6187285fed1SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) { 6197285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y); 6209371c9d4SSatish Balay acolidx += 8; 6219371c9d4SSatish Balay aval += 8; 6227285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2); 6239371c9d4SSatish Balay acolidx += 8; 6249371c9d4SSatish Balay aval += 8; 6257285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3); 6269371c9d4SSatish Balay acolidx += 8; 6279371c9d4SSatish Balay aval += 8; 6287285fed1SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4); 6299371c9d4SSatish Balay acolidx += 8; 6309371c9d4SSatish Balay aval += 8; 6317285fed1SHong Zhang } 6327285fed1SHong Zhang 6337285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2); 6347285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3); 6357285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4); 6367285fed1SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 637ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y); 638d4002b98SHong Zhang } else { 639ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8 * i], vec_y); 640d4002b98SHong Zhang } 6417285fed1SHong Zhang } 64221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 64307e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight); 6447285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */ 6457285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 6467285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0); 6477285fed1SHong Zhang 6487285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6497285fed1SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) { 6507285fed1SHong Zhang for (r = 0; r < (A->rmap->n & 0x07); ++r) { 6517285fed1SHong Zhang row = 8 * i + r; 6527285fed1SHong Zhang yval = (MatScalar)0.0; 6537285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6547285fed1SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]]; 6557285fed1SHong Zhang z[row] = y[row] + yval; 6567285fed1SHong Zhang } 6577285fed1SHong Zhang break; 6587285fed1SHong Zhang } 6597285fed1SHong Zhang 6607285fed1SHong Zhang vec_y = _mm256_loadu_pd(y + 8 * i); 6617285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y + 8 * i + 4); 6627285fed1SHong Zhang 6637285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6647285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) { 6657285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 666165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd(); 6677285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6687285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 669165f9cc3SJed Brown vec_x = _mm256_setzero_pd(); 6707285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 6717285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6727285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6737285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 6747285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y); 6757285fed1SHong Zhang aval += 4; 6767285fed1SHong Zhang 6777285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6787285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6797285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6807285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0); 6817285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6827285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6837285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1); 6847285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2); 6857285fed1SHong Zhang aval += 4; 6867285fed1SHong Zhang } 6877285fed1SHong Zhang 6887285fed1SHong Zhang _mm256_storeu_pd(z + i * 8, vec_y); 6897285fed1SHong Zhang _mm256_storeu_pd(z + i * 8 + 4, vec_y2); 6907285fed1SHong Zhang } 691d4002b98SHong Zhang #else 69207e43b41SHong Zhang PetscCall(PetscMalloc1(sliceheight, &sum)); 6937285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */ 69407e43b41SHong Zhang for (j = 0; j < sliceheight; j++) { 6952d1451d4SHong Zhang sum[j] = 0.0; 69607e43b41SHong Zhang for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]]; 697d4002b98SHong Zhang } 69807e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { 69907e43b41SHong Zhang for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j]; 700d4002b98SHong Zhang } else { 70107e43b41SHong Zhang for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j]; 7027285fed1SHong Zhang } 703d4002b98SHong Zhang } 70407e43b41SHong Zhang PetscCall(PetscFree(sum)); 705d4002b98SHong Zhang #endif 706d4002b98SHong Zhang 7079566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 7089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 7099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayPair(yy, zz, &y, &z)); 7103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 711d4002b98SHong Zhang } 712d4002b98SHong Zhang 713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy) 714d71ae5a4SJacob Faibussowitsch { 715d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 716d4002b98SHong Zhang PetscScalar *y; 717d4002b98SHong Zhang const PetscScalar *x; 718d4002b98SHong Zhang const MatScalar *aval = a->val; 719d4002b98SHong Zhang const PetscInt *acolidx = a->colidx; 72007e43b41SHong Zhang PetscInt i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight; 721d4002b98SHong Zhang 722d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 723d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval) 724d4002b98SHong Zhang #endif 725d4002b98SHong Zhang 726d4002b98SHong Zhang PetscFunctionBegin; 727b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) { 7289566063dSJacob Faibussowitsch PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy)); 7293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7309fc32365SStefano Zampini } 7319566063dSJacob Faibussowitsch if (zz != yy) PetscCall(VecCopy(zz, yy)); 7322d1451d4SHong Zhang 7332d1451d4SHong Zhang if (a->nz) { 7349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x)); 7359566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y)); 736d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 73707e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { 73807e43b41SHong Zhang for (r = 0; r < (A->rmap->n % sliceheight); ++r) { 73907e43b41SHong Zhang row = sliceheight * i + r; 7407285fed1SHong Zhang nnz_in_row = a->rlen[row]; 74107e43b41SHong Zhang for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row]; 7427285fed1SHong Zhang } 7437285fed1SHong Zhang break; 7447285fed1SHong Zhang } 74507e43b41SHong Zhang for (r = 0; r < sliceheight; ++r) 74607e43b41SHong Zhang for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r]; 747d4002b98SHong Zhang } 7482d1451d4SHong Zhang PetscCall(PetscLogFlops(2.0 * a->nz)); 7499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x)); 7509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y)); 7512d1451d4SHong Zhang } 7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 753d4002b98SHong Zhang } 754d4002b98SHong Zhang 755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy) 756d71ae5a4SJacob Faibussowitsch { 757d4002b98SHong Zhang PetscFunctionBegin; 758b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) { 7599566063dSJacob Faibussowitsch PetscCall(MatMult_SeqSELL(A, xx, yy)); 7609fc32365SStefano Zampini } else { 7619566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 7629566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy)); 7639fc32365SStefano Zampini } 7643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 765d4002b98SHong Zhang } 766d4002b98SHong Zhang 767d4002b98SHong Zhang /* 768d4002b98SHong Zhang Checks for missing diagonals 769d4002b98SHong Zhang */ 770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A, PetscBool *missing, PetscInt *d) 771d71ae5a4SJacob Faibussowitsch { 772d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 773d4002b98SHong Zhang PetscInt *diag, i; 774d4002b98SHong Zhang 775d4002b98SHong Zhang PetscFunctionBegin; 776d4002b98SHong Zhang *missing = PETSC_FALSE; 777f4f49eeaSPierre Jolivet if (A->rmap->n > 0 && !a->colidx) { 778d4002b98SHong Zhang *missing = PETSC_TRUE; 779d4002b98SHong Zhang if (d) *d = 0; 7809566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n")); 781d4002b98SHong Zhang } else { 782d4002b98SHong Zhang diag = a->diag; 783d4002b98SHong Zhang for (i = 0; i < A->rmap->n; i++) { 784d4002b98SHong Zhang if (diag[i] == -1) { 785d4002b98SHong Zhang *missing = PETSC_TRUE; 786d4002b98SHong Zhang if (d) *d = i; 7879566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix is missing diagonal number %" PetscInt_FMT "\n", i)); 788d4002b98SHong Zhang break; 789d4002b98SHong Zhang } 790d4002b98SHong Zhang } 791d4002b98SHong Zhang } 7923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 793d4002b98SHong Zhang } 794d4002b98SHong Zhang 795d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 796d71ae5a4SJacob Faibussowitsch { 797d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 798d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 799d4002b98SHong Zhang 800d4002b98SHong Zhang PetscFunctionBegin; 801d4002b98SHong Zhang if (!a->diag) { 8029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &a->diag)); 803d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 804d4002b98SHong Zhang } 805d4002b98SHong Zhang for (i = 0; i < m; i++) { /* loop over rows */ 80607e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 807d4002b98SHong Zhang a->diag[i] = -1; 808d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 80907e43b41SHong Zhang if (a->colidx[shift + a->sliceheight * j] == i) { 81007e43b41SHong Zhang a->diag[i] = shift + a->sliceheight * j; 811d4002b98SHong Zhang break; 812d4002b98SHong Zhang } 813d4002b98SHong Zhang } 814d4002b98SHong Zhang } 8153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 816d4002b98SHong Zhang } 817d4002b98SHong Zhang 818d4002b98SHong Zhang /* 819d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 820d4002b98SHong Zhang */ 821d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift) 822d71ae5a4SJacob Faibussowitsch { 823d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 824d4002b98SHong Zhang PetscInt i, *diag, m = A->rmap->n; 825d4002b98SHong Zhang MatScalar *val = a->val; 826d4002b98SHong Zhang PetscScalar *idiag, *mdiag; 827d4002b98SHong Zhang 828d4002b98SHong Zhang PetscFunctionBegin; 8293ba16761SJacob Faibussowitsch if (a->idiagvalid) PetscFunctionReturn(PETSC_SUCCESS); 8309566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 831d4002b98SHong Zhang diag = a->diag; 832d4002b98SHong Zhang if (!a->idiag) { 8339566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work)); 834d4002b98SHong Zhang val = a->val; 835d4002b98SHong Zhang } 836d4002b98SHong Zhang mdiag = a->mdiag; 837d4002b98SHong Zhang idiag = a->idiag; 838d4002b98SHong Zhang 839d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 840d4002b98SHong Zhang for (i = 0; i < m; i++) { 841d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 842d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 8430fdf79fbSJacob Faibussowitsch PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i); 8449566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i)); 845d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 846d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 847d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 848d4002b98SHong Zhang } 849d4002b98SHong Zhang idiag[i] = 1.0 / val[diag[i]]; 850d4002b98SHong Zhang } 8519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(m)); 852d4002b98SHong Zhang } else { 853d4002b98SHong Zhang for (i = 0; i < m; i++) { 854d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 855d4002b98SHong Zhang idiag[i] = omega / (fshift + val[diag[i]]); 856d4002b98SHong Zhang } 8579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * m)); 858d4002b98SHong Zhang } 859d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 861d4002b98SHong Zhang } 862d4002b98SHong Zhang 863d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 864d71ae5a4SJacob Faibussowitsch { 865d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 866d4002b98SHong Zhang 867d4002b98SHong Zhang PetscFunctionBegin; 8689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices])); 8699566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 8703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 871d4002b98SHong Zhang } 872d4002b98SHong Zhang 873d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A) 874d71ae5a4SJacob Faibussowitsch { 875d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 876d4002b98SHong Zhang 877d4002b98SHong Zhang PetscFunctionBegin; 8783ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz)); 8799566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx)); 8809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 8819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 8829566063dSJacob Faibussowitsch PetscCall(PetscFree(a->diag)); 8839566063dSJacob Faibussowitsch PetscCall(PetscFree(a->rlen)); 8849566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sliidx)); 8859566063dSJacob Faibussowitsch PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work)); 8869566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 8879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 8889566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 8899566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->getrowcols, a->getrowvals)); 8909566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 891*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 89290d2215bSHong Zhang PetscCall(PetscFree(a->chunk_slice_map)); 89390d2215bSHong Zhang #endif 894d4002b98SHong Zhang 8959566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL)); 8969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL)); 8979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL)); 8989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL)); 8992e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL)); 9002e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL)); 901b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqaij_C", NULL)); 9022d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 903b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellcuda_C", NULL)); 9042d1451d4SHong Zhang #endif 905*773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP) 906*773bf0f6SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellhip_C", NULL)); 907*773bf0f6SHong Zhang #endif 90807e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL)); 90907e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL)); 91007e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL)); 911b921024eSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetVarSliceSize_C", NULL)); 91207e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL)); 9133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 914d4002b98SHong Zhang } 915d4002b98SHong Zhang 916d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg) 917d71ae5a4SJacob Faibussowitsch { 918d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 919d4002b98SHong Zhang 920d4002b98SHong Zhang PetscFunctionBegin; 921d4002b98SHong Zhang switch (op) { 922d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED: 923d71ae5a4SJacob Faibussowitsch a->roworiented = flg; 924d71ae5a4SJacob Faibussowitsch break; 925d71ae5a4SJacob Faibussowitsch case MAT_KEEP_NONZERO_PATTERN: 926d71ae5a4SJacob Faibussowitsch a->keepnonzeropattern = flg; 927d71ae5a4SJacob Faibussowitsch break; 928d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATIONS: 929d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? 0 : 1); 930d71ae5a4SJacob Faibussowitsch break; 931d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATION_ERR: 932d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -1 : 0); 933d71ae5a4SJacob Faibussowitsch break; 934d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_ALLOCATION_ERR: 935d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -2 : 0); 936d71ae5a4SJacob Faibussowitsch break; 937d71ae5a4SJacob Faibussowitsch case MAT_UNUSED_NONZERO_LOCATION_ERR: 938d71ae5a4SJacob Faibussowitsch a->nounused = (flg ? -1 : 0); 939d71ae5a4SJacob Faibussowitsch break; 9408c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 941d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 942d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 943d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 944d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 945d71ae5a4SJacob Faibussowitsch break; 946d4002b98SHong Zhang case MAT_SPD: 947d4002b98SHong Zhang case MAT_SYMMETRIC: 948d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 949d4002b98SHong Zhang case MAT_HERMITIAN: 950d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 951b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 952b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 953d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 954d4002b98SHong Zhang break; 955d71ae5a4SJacob Faibussowitsch default: 956d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 957d4002b98SHong Zhang } 9583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 959d4002b98SHong Zhang } 960d4002b98SHong Zhang 961d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v) 962d71ae5a4SJacob Faibussowitsch { 963d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 964d4002b98SHong Zhang PetscInt i, j, n, shift; 965d4002b98SHong Zhang PetscScalar *x, zero = 0.0; 966d4002b98SHong Zhang 967d4002b98SHong Zhang PetscFunctionBegin; 9689566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n)); 96908401ef6SPierre Jolivet PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 970d4002b98SHong Zhang 971d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 972d4002b98SHong Zhang PetscInt *diag = a->diag; 9739566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 974d4002b98SHong Zhang for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]]; 9759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 9763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 977d4002b98SHong Zhang } 978d4002b98SHong Zhang 9799566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 9809566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 981d4002b98SHong Zhang for (i = 0; i < n; i++) { /* loop over rows */ 98207e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 983d4002b98SHong Zhang x[i] = 0; 984d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 98507e43b41SHong Zhang if (a->colidx[shift + a->sliceheight * j] == i) { 98607e43b41SHong Zhang x[i] = a->val[shift + a->sliceheight * j]; 987d4002b98SHong Zhang break; 988d4002b98SHong Zhang } 989d4002b98SHong Zhang } 990d4002b98SHong Zhang } 9919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 993d4002b98SHong Zhang } 994d4002b98SHong Zhang 995d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr) 996d71ae5a4SJacob Faibussowitsch { 997d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 998d4002b98SHong Zhang const PetscScalar *l, *r; 999d4002b98SHong Zhang PetscInt i, j, m, n, row; 1000d4002b98SHong Zhang 1001d4002b98SHong Zhang PetscFunctionBegin; 1002d4002b98SHong Zhang if (ll) { 1003d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 1004d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 10059566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &m)); 100608401ef6SPierre Jolivet PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length"); 10079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 1008d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 100907e43b41SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */ 101007e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { 101107e43b41SHong Zhang if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row]; 1012dab86139SHong Zhang } 1013dab86139SHong Zhang } else { 101407e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { a->val[j] *= l[a->sliceheight * i + row]; } 1015d4002b98SHong Zhang } 1016dab86139SHong Zhang } 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 10189566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1019d4002b98SHong Zhang } 1020d4002b98SHong Zhang if (rr) { 10219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &n)); 102208401ef6SPierre Jolivet PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length"); 10239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &r)); 1024d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 102507e43b41SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */ 102607e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) { 102707e43b41SHong Zhang if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]]; 1028dab86139SHong Zhang } 1029dab86139SHong Zhang } else { 1030ad540459SPierre Jolivet for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]]; 1031d4002b98SHong Zhang } 1032dab86139SHong Zhang } 10339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &r)); 10349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1035d4002b98SHong Zhang } 10369566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1037*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 10382d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU; 10392d1451d4SHong Zhang #endif 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1041d4002b98SHong Zhang } 1042d4002b98SHong Zhang 1043d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[]) 1044d71ae5a4SJacob Faibussowitsch { 1045d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1046d4002b98SHong Zhang PetscInt *cp, i, k, low, high, t, row, col, l; 1047d4002b98SHong Zhang PetscInt shift; 1048d4002b98SHong Zhang MatScalar *vp; 1049d4002b98SHong Zhang 1050d4002b98SHong Zhang PetscFunctionBegin; 105168aafef3SStefano Zampini for (k = 0; k < m; k++) { /* loop over requested rows */ 1052d4002b98SHong Zhang row = im[k]; 1053d4002b98SHong Zhang if (row < 0) continue; 10546bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1); 105507e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */ 1056d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */ 1057d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */ 105868aafef3SStefano Zampini for (l = 0; l < n; l++) { /* loop over requested columns */ 1059d4002b98SHong Zhang col = in[l]; 1060d4002b98SHong Zhang if (col < 0) continue; 10616bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1); 10629371c9d4SSatish Balay high = a->rlen[row]; 10639371c9d4SSatish Balay low = 0; /* assume unsorted */ 1064d4002b98SHong Zhang while (high - low > 5) { 1065d4002b98SHong Zhang t = (low + high) / 2; 106607e43b41SHong Zhang if (*(cp + a->sliceheight * t) > col) high = t; 1067d4002b98SHong Zhang else low = t; 1068d4002b98SHong Zhang } 1069d4002b98SHong Zhang for (i = low; i < high; i++) { 107007e43b41SHong Zhang if (*(cp + a->sliceheight * i) > col) break; 107107e43b41SHong Zhang if (*(cp + a->sliceheight * i) == col) { 107207e43b41SHong Zhang *v++ = *(vp + a->sliceheight * i); 1073d4002b98SHong Zhang goto finished; 1074d4002b98SHong Zhang } 1075d4002b98SHong Zhang } 1076d4002b98SHong Zhang *v++ = 0.0; 1077d4002b98SHong Zhang finished:; 1078d4002b98SHong Zhang } 1079d4002b98SHong Zhang } 10803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1081d4002b98SHong Zhang } 1082d4002b98SHong Zhang 1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer) 1084d71ae5a4SJacob Faibussowitsch { 1085d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1086d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 1087d4002b98SHong Zhang const char *name; 1088d4002b98SHong Zhang PetscViewerFormat format; 1089d4002b98SHong Zhang 1090d4002b98SHong Zhang PetscFunctionBegin; 10919566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1092d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1093d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1094d4002b98SHong Zhang /* 1095d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1096d4002b98SHong Zhang nofinalvalue = 1; 1097d4002b98SHong Zhang } 1098d4002b98SHong Zhang */ 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 11009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n)); 11019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz)); 1102d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue)); 1104d4002b98SHong Zhang #else 11059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue)); 1106d4002b98SHong Zhang #endif 11079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n")); 1108d4002b98SHong Zhang 1109d4002b98SHong Zhang for (i = 0; i < m; i++) { 111007e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1111d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1112d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 111307e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1114d4002b98SHong Zhang #else 111507e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j])); 1116d4002b98SHong Zhang #endif 1117d4002b98SHong Zhang } 1118d4002b98SHong Zhang } 1119d4002b98SHong Zhang /* 1120d4002b98SHong Zhang if (nofinalvalue) { 1121d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.)); 1123d4002b98SHong Zhang #else 11249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0)); 1125d4002b98SHong Zhang #endif 1126d4002b98SHong Zhang } 1127d4002b98SHong Zhang */ 11289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &name)); 11299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name)); 11309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1131d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1133d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 11349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1135d4002b98SHong Zhang for (i = 0; i < m; i++) { 11369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 113707e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1138d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1139d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 114007e43b41SHong Zhang if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) { 114107e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 114207e43b41SHong Zhang } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) { 114307e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 114407e43b41SHong Zhang } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) { 114507e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]))); 1146d4002b98SHong Zhang } 1147d4002b98SHong Zhang #else 114807e43b41SHong Zhang if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j])); 1149d4002b98SHong Zhang #endif 1150d4002b98SHong Zhang } 11519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1152d4002b98SHong Zhang } 11539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1154d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1155d4002b98SHong Zhang PetscInt cnt = 0, jcnt; 1156d4002b98SHong Zhang PetscScalar value; 1157d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1158d4002b98SHong Zhang PetscBool realonly = PETSC_TRUE; 1159d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { 1160d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1161d4002b98SHong Zhang realonly = PETSC_FALSE; 1162d4002b98SHong Zhang break; 1163d4002b98SHong Zhang } 1164d4002b98SHong Zhang } 1165d4002b98SHong Zhang #endif 1166d4002b98SHong Zhang 11679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1168d4002b98SHong Zhang for (i = 0; i < m; i++) { 1169d4002b98SHong Zhang jcnt = 0; 117007e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1171d4002b98SHong Zhang for (j = 0; j < A->cmap->n; j++) { 117207e43b41SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) { 1173d4002b98SHong Zhang value = a->val[cnt++]; 1174d4002b98SHong Zhang jcnt++; 1175d4002b98SHong Zhang } else { 1176d4002b98SHong Zhang value = 0.0; 1177d4002b98SHong Zhang } 1178d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1179d4002b98SHong Zhang if (realonly) { 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value))); 1181d4002b98SHong Zhang } else { 11829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value))); 1183d4002b98SHong Zhang } 1184d4002b98SHong Zhang #else 11859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value)); 1186d4002b98SHong Zhang #endif 1187d4002b98SHong Zhang } 11889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1189d4002b98SHong Zhang } 11909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1191d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1192d4002b98SHong Zhang PetscInt fshift = 1; 11939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1194d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 11959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n")); 1196d4002b98SHong Zhang #else 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n")); 1198d4002b98SHong Zhang #endif 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz)); 1200d4002b98SHong Zhang for (i = 0; i < m; i++) { 120107e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1202d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1203d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 120407e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1205d4002b98SHong Zhang #else 120607e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j])); 1207d4002b98SHong Zhang #endif 1208d4002b98SHong Zhang } 1209d4002b98SHong Zhang } 12109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 121168aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 121268aafef3SStefano Zampini for (i = 0; i < a->totalslices; i++) { /* loop over slices */ 121368aafef3SStefano Zampini PetscInt row; 12149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1])); 121507e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { 121668aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 121768aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 121807e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 121968aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 122007e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j]))); 122168aafef3SStefano Zampini } else { 122207e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]))); 122368aafef3SStefano Zampini } 122468aafef3SStefano Zampini #else 122507e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j])); 122668aafef3SStefano Zampini #endif 122768aafef3SStefano Zampini } 122868aafef3SStefano Zampini } 1229d4002b98SHong Zhang } else { 12309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1231d4002b98SHong Zhang if (A->factortype) { 1232d4002b98SHong Zhang for (i = 0; i < m; i++) { 123307e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1235d4002b98SHong Zhang /* L part */ 123607e43b41SHong Zhang for (j = shift; j < a->diag[i]; j += a->sliceheight) { 1237d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 123807e43b41SHong Zhang if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) { 12399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 124007e43b41SHong Zhang } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) { 12419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j])))); 1242d4002b98SHong Zhang } else { 12439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j]))); 1244d4002b98SHong Zhang } 1245d4002b98SHong Zhang #else 12469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j])); 1247d4002b98SHong Zhang #endif 1248d4002b98SHong Zhang } 1249d4002b98SHong Zhang /* diagonal */ 1250d4002b98SHong Zhang j = a->diag[i]; 1251d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1252d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j]))); 1254d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12559566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j])))); 1256d4002b98SHong Zhang } else { 12579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]))); 1258d4002b98SHong Zhang } 1259d4002b98SHong Zhang #else 12609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1.0 / a->val[j]))); 1261d4002b98SHong Zhang #endif 1262d4002b98SHong Zhang 1263d4002b98SHong Zhang /* U part */ 126407e43b41SHong Zhang for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) { 1265d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1266d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 12679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j]))); 1268d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 12699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j])))); 1270d4002b98SHong Zhang } else { 12719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j]))); 1272d4002b98SHong Zhang } 1273d4002b98SHong Zhang #else 12749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j])); 1275d4002b98SHong Zhang #endif 1276d4002b98SHong Zhang } 12779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1278d4002b98SHong Zhang } 1279d4002b98SHong Zhang } else { 1280d4002b98SHong Zhang for (i = 0; i < m; i++) { 128107e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 12829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i)); 1283d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 1284d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1285d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 128607e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1287d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 128807e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j]))); 1289d4002b98SHong Zhang } else { 129007e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]))); 1291d4002b98SHong Zhang } 1292d4002b98SHong Zhang #else 129307e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j])); 1294d4002b98SHong Zhang #endif 1295d4002b98SHong Zhang } 12969566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1297d4002b98SHong Zhang } 1298d4002b98SHong Zhang } 12999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 1300d4002b98SHong Zhang } 13019566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1303d4002b98SHong Zhang } 1304d4002b98SHong Zhang 1305d4002b98SHong Zhang #include <petscdraw.h> 1306ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa) 1307d71ae5a4SJacob Faibussowitsch { 1308d4002b98SHong Zhang Mat A = (Mat)Aa; 1309d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1310d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift; 1311d4002b98SHong Zhang int color; 1312d4002b98SHong Zhang PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r; 1313d4002b98SHong Zhang PetscViewer viewer; 1314d4002b98SHong Zhang PetscViewerFormat format; 1315d4002b98SHong Zhang 1316d4002b98SHong Zhang PetscFunctionBegin; 13179566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer)); 13189566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 13199566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr)); 1320d4002b98SHong Zhang 1321d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1322d4002b98SHong Zhang 1323d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1324d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1325d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1326d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1327d4002b98SHong Zhang for (i = 0; i < m; i++) { 132807e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 13299371c9d4SSatish Balay y_l = m - i - 1.0; 13309371c9d4SSatish Balay y_r = y_l + 1.0; 1331d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 133207e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 13339371c9d4SSatish Balay x_r = x_l + 1.0; 133407e43b41SHong Zhang if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue; 13359566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1336d4002b98SHong Zhang } 1337d4002b98SHong Zhang } 1338d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1339d4002b98SHong Zhang for (i = 0; i < m; i++) { 134007e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 13419371c9d4SSatish Balay y_l = m - i - 1.0; 13429371c9d4SSatish Balay y_r = y_l + 1.0; 1343d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 134407e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 13459371c9d4SSatish Balay x_r = x_l + 1.0; 134607e43b41SHong Zhang if (a->val[shift + a->sliceheight * j] != 0.) continue; 13479566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1348d4002b98SHong Zhang } 1349d4002b98SHong Zhang } 1350d4002b98SHong Zhang color = PETSC_DRAW_RED; 1351d4002b98SHong Zhang for (i = 0; i < m; i++) { 135207e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 13539371c9d4SSatish Balay y_l = m - i - 1.0; 13549371c9d4SSatish Balay y_r = y_l + 1.0; 1355d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 135607e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 13579371c9d4SSatish Balay x_r = x_l + 1.0; 135807e43b41SHong Zhang if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue; 13599566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1360d4002b98SHong Zhang } 1361d4002b98SHong Zhang } 1362d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1363d4002b98SHong Zhang } else { 1364d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1365d4002b98SHong Zhang /* first determine max of all nonzero values */ 1366d4002b98SHong Zhang PetscReal minv = 0.0, maxv = 0.0; 1367d4002b98SHong Zhang PetscInt count = 0; 1368d4002b98SHong Zhang PetscDraw popup; 1369d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { 1370d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1371d4002b98SHong Zhang } 1372d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 13739566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 13749566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, minv, maxv)); 1375d4002b98SHong Zhang 1376d0609cedSBarry Smith PetscDrawCollectiveBegin(draw); 1377d4002b98SHong Zhang for (i = 0; i < m; i++) { 137807e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; 1379d4002b98SHong Zhang y_l = m - i - 1.0; 1380d4002b98SHong Zhang y_r = y_l + 1.0; 1381d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) { 138207e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j]; 1383d4002b98SHong Zhang x_r = x_l + 1.0; 1384d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv); 13859566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color)); 1386d4002b98SHong Zhang count++; 1387d4002b98SHong Zhang } 1388d4002b98SHong Zhang } 1389d0609cedSBarry Smith PetscDrawCollectiveEnd(draw); 1390d4002b98SHong Zhang } 13913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1392d4002b98SHong Zhang } 1393d4002b98SHong Zhang 1394d4002b98SHong Zhang #include <petscdraw.h> 1395ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer) 1396d71ae5a4SJacob Faibussowitsch { 1397d4002b98SHong Zhang PetscDraw draw; 1398d4002b98SHong Zhang PetscReal xr, yr, xl, yl, h, w; 1399d4002b98SHong Zhang PetscBool isnull; 1400d4002b98SHong Zhang 1401d4002b98SHong Zhang PetscFunctionBegin; 14029566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 14039566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 14043ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 1405d4002b98SHong Zhang 14069371c9d4SSatish Balay xr = A->cmap->n; 14079371c9d4SSatish Balay yr = A->rmap->n; 14089371c9d4SSatish Balay h = yr / 10.0; 14099371c9d4SSatish Balay w = xr / 10.0; 14109371c9d4SSatish Balay xr += w; 14119371c9d4SSatish Balay yr += h; 14129371c9d4SSatish Balay xl = -w; 14139371c9d4SSatish Balay yl = -h; 14149566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr)); 14159566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer)); 14169566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A)); 14179566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL)); 14189566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 14193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1420d4002b98SHong Zhang } 1421d4002b98SHong Zhang 1422d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer) 1423d71ae5a4SJacob Faibussowitsch { 1424d4002b98SHong Zhang PetscBool iascii, isbinary, isdraw; 1425d4002b98SHong Zhang 1426d4002b98SHong Zhang PetscFunctionBegin; 14279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 14289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 14299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 1430d4002b98SHong Zhang if (iascii) { 14319566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL_ASCII(A, viewer)); 1432d4002b98SHong Zhang } else if (isbinary) { 14339566063dSJacob Faibussowitsch /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */ 14341baa6e33SBarry Smith } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer)); 14353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1436d4002b98SHong Zhang } 1437d4002b98SHong Zhang 1438d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode) 1439d71ae5a4SJacob Faibussowitsch { 1440d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1441d4002b98SHong Zhang PetscInt i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k; 1442d4002b98SHong Zhang MatScalar *vp; 1443*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 144490d2215bSHong Zhang PetscInt totalchunks = 0; 144590d2215bSHong Zhang #endif 1446d4002b98SHong Zhang 1447d4002b98SHong Zhang PetscFunctionBegin; 14483ba16761SJacob Faibussowitsch if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS); 1449d4002b98SHong Zhang /* To do: compress out the unused elements */ 14509566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqSELL(A)); 14519566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz)); 14529566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs)); 14539566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax)); 14542d1451d4SHong Zhang a->nonzerorowcnt = 0; 1455d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1456d4002b98SHong Zhang for (i = 0; i < a->totalslices; ++i) { 1457d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 14588e3a54c0SPierre Jolivet cp = PetscSafePointerPlusOffset(a->colidx, shift); /* pointer to the column indices of the slice */ 14598e3a54c0SPierre Jolivet vp = PetscSafePointerPlusOffset(a->val, shift); /* pointer to the nonzero values of the slice */ 146007e43b41SHong Zhang for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */ 146107e43b41SHong Zhang row = a->sliceheight * i + row_in_slice; 1462d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1463d4002b98SHong Zhang /* 1464d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1465d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1466d4002b98SHong Zhang */ 1467d4002b98SHong Zhang lastcol = 0; 1468d4002b98SHong Zhang if (nrow > 0) { /* nonempty row */ 14692d1451d4SHong Zhang a->nonzerorowcnt++; 147007e43b41SHong Zhang lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */ 1471aaa8cc7dSPierre Jolivet } else if (!row_in_slice) { /* first row of the correct slice is empty */ 147207e43b41SHong Zhang for (j = 1; j < a->sliceheight; j++) { 147307e43b41SHong Zhang if (a->rlen[a->sliceheight * i + j]) { 1474d4002b98SHong Zhang lastcol = cp[j]; 1475d4002b98SHong Zhang break; 1476d4002b98SHong Zhang } 1477d4002b98SHong Zhang } 1478d4002b98SHong Zhang } else { 1479d4002b98SHong Zhang if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */ 1480d4002b98SHong Zhang } 1481d4002b98SHong Zhang 148207e43b41SHong Zhang for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) { 148307e43b41SHong Zhang cp[a->sliceheight * k + row_in_slice] = lastcol; 148407e43b41SHong Zhang vp[a->sliceheight * k + row_in_slice] = (MatScalar)0; 1485d4002b98SHong Zhang } 1486d4002b98SHong Zhang } 1487d4002b98SHong Zhang } 1488d4002b98SHong Zhang 1489d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1490d4002b98SHong Zhang a->reallocs = 0; 1491d4002b98SHong Zhang 14929566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(A)); 1493*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 149490d2215bSHong Zhang if (!a->chunksize && a->totalslices) { 149590d2215bSHong Zhang a->chunksize = 64; 149690d2215bSHong Zhang while (a->chunksize < 1024 && 2 * a->chunksize <= a->sliidx[a->totalslices] / a->totalslices) a->chunksize *= 2; 149790d2215bSHong Zhang totalchunks = 1 + (a->sliidx[a->totalslices] - 1) / a->chunksize; 149890d2215bSHong Zhang } 149990d2215bSHong Zhang if (totalchunks != a->totalchunks) { 150090d2215bSHong Zhang PetscCall(PetscFree(a->chunk_slice_map)); 150190d2215bSHong Zhang PetscCall(PetscMalloc1(totalchunks, &a->chunk_slice_map)); 150290d2215bSHong Zhang a->totalchunks = totalchunks; 150390d2215bSHong Zhang } 150490d2215bSHong Zhang j = 0; 150590d2215bSHong Zhang for (i = 0; i < totalchunks; i++) { 150690d2215bSHong Zhang while (a->sliidx[j + 1] <= i * a->chunksize && j < a->totalslices) j++; 150790d2215bSHong Zhang a->chunk_slice_map[i] = j; 150890d2215bSHong Zhang } 150990d2215bSHong Zhang #endif 15103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1511d4002b98SHong Zhang } 1512d4002b98SHong Zhang 1513d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info) 1514d71ae5a4SJacob Faibussowitsch { 1515d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1516d4002b98SHong Zhang 1517d4002b98SHong Zhang PetscFunctionBegin; 1518d4002b98SHong Zhang info->block_size = 1.0; 15193966268fSBarry Smith info->nz_allocated = a->maxallocmat; 15203966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */ 15213966268fSBarry Smith info->nz_unneeded = (a->maxallocmat - a->sliidx[a->totalslices]); 15223966268fSBarry Smith info->assemblies = A->num_ass; 15233966268fSBarry Smith info->mallocs = A->info.mallocs; 15244dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */ 1525d4002b98SHong Zhang if (A->factortype) { 1526d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1527d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1528d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1529d4002b98SHong Zhang } else { 1530d4002b98SHong Zhang info->fill_ratio_given = 0; 1531d4002b98SHong Zhang info->fill_ratio_needed = 0; 1532d4002b98SHong Zhang info->factor_mallocs = 0; 1533d4002b98SHong Zhang } 15343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1535d4002b98SHong Zhang } 1536d4002b98SHong Zhang 1537d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is) 1538d71ae5a4SJacob Faibussowitsch { 1539d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1540d4002b98SHong Zhang PetscInt shift, i, k, l, low, high, t, ii, row, col, nrow; 1541d4002b98SHong Zhang PetscInt *cp, nonew = a->nonew, lastcol = -1; 1542d4002b98SHong Zhang MatScalar *vp, value; 1543*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 15442d1451d4SHong Zhang PetscBool inserted = PETSC_FALSE; 15454e58db63SHong Zhang PetscInt mul = DEVICE_MEM_ALIGN / a->sliceheight; 15462d1451d4SHong Zhang #endif 1547d4002b98SHong Zhang 1548d4002b98SHong Zhang PetscFunctionBegin; 1549d4002b98SHong Zhang for (k = 0; k < m; k++) { /* loop over added rows */ 1550d4002b98SHong Zhang row = im[k]; 1551d4002b98SHong Zhang if (row < 0) continue; 15526bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1); 155307e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */ 1554d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */ 1555d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */ 1556d4002b98SHong Zhang nrow = a->rlen[row]; 1557d4002b98SHong Zhang low = 0; 1558d4002b98SHong Zhang high = nrow; 1559d4002b98SHong Zhang 1560d4002b98SHong Zhang for (l = 0; l < n; l++) { /* loop over added columns */ 1561d4002b98SHong Zhang col = in[l]; 1562d4002b98SHong Zhang if (col < 0) continue; 15636bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1); 1564d4002b98SHong Zhang if (a->roworiented) { 1565d4002b98SHong Zhang value = v[l + k * n]; 1566d4002b98SHong Zhang } else { 1567d4002b98SHong Zhang value = v[k + l * m]; 1568d4002b98SHong Zhang } 1569d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1570d4002b98SHong Zhang 1571ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */ 1572d4002b98SHong Zhang if (col <= lastcol) low = 0; 1573d4002b98SHong Zhang else high = nrow; 1574d4002b98SHong Zhang lastcol = col; 1575d4002b98SHong Zhang while (high - low > 5) { 1576d4002b98SHong Zhang t = (low + high) / 2; 157707e43b41SHong Zhang if (*(cp + a->sliceheight * t) > col) high = t; 1578d4002b98SHong Zhang else low = t; 1579d4002b98SHong Zhang } 1580d4002b98SHong Zhang for (i = low; i < high; i++) { 158107e43b41SHong Zhang if (*(cp + a->sliceheight * i) > col) break; 158207e43b41SHong Zhang if (*(cp + a->sliceheight * i) == col) { 158307e43b41SHong Zhang if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value; 158407e43b41SHong Zhang else *(vp + a->sliceheight * i) = value; 1585*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 15862d1451d4SHong Zhang inserted = PETSC_TRUE; 15872d1451d4SHong Zhang #endif 1588d4002b98SHong Zhang low = i + 1; 1589d4002b98SHong Zhang goto noinsert; 1590d4002b98SHong Zhang } 1591d4002b98SHong Zhang } 1592d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1593d4002b98SHong Zhang if (nonew == 1) goto noinsert; 159408401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 1595*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 15964e58db63SHong Zhang MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, mul); 15974e58db63SHong Zhang #else 1598d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 15994e58db63SHong Zhang MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, 1); 16004e58db63SHong Zhang #endif 1601d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1602d4002b98SHong Zhang for (ii = nrow - 1; ii >= i; ii--) { 160307e43b41SHong Zhang *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii); 160407e43b41SHong Zhang *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii); 1605d4002b98SHong Zhang } 1606d4002b98SHong Zhang a->rlen[row]++; 160707e43b41SHong Zhang *(cp + a->sliceheight * i) = col; 160807e43b41SHong Zhang *(vp + a->sliceheight * i) = value; 1609d4002b98SHong Zhang a->nz++; 1610d4002b98SHong Zhang A->nonzerostate++; 1611*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 16122d1451d4SHong Zhang inserted = PETSC_TRUE; 16132d1451d4SHong Zhang #endif 16149371c9d4SSatish Balay low = i + 1; 16159371c9d4SSatish Balay high++; 16169371c9d4SSatish Balay nrow++; 1617d4002b98SHong Zhang noinsert:; 1618d4002b98SHong Zhang } 1619d4002b98SHong Zhang a->rlen[row] = nrow; 1620d4002b98SHong Zhang } 1621*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 16222d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU; 16232d1451d4SHong Zhang #endif 16243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1625d4002b98SHong Zhang } 1626d4002b98SHong Zhang 1627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str) 1628d71ae5a4SJacob Faibussowitsch { 1629d4002b98SHong Zhang PetscFunctionBegin; 1630d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1631d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1632d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1633d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data; 1634d4002b98SHong Zhang 163508401ef6SPierre Jolivet PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different"); 16369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices])); 1637d4002b98SHong Zhang } else { 16389566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 1639d4002b98SHong Zhang } 16403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1641d4002b98SHong Zhang } 1642d4002b98SHong Zhang 1643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A) 1644d71ae5a4SJacob Faibussowitsch { 1645d4002b98SHong Zhang PetscFunctionBegin; 16469566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL)); 16473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1648d4002b98SHong Zhang } 1649d4002b98SHong Zhang 1650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[]) 1651d71ae5a4SJacob Faibussowitsch { 1652d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1653d4002b98SHong Zhang 1654d4002b98SHong Zhang PetscFunctionBegin; 1655d4002b98SHong Zhang *array = a->val; 16563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1657d4002b98SHong Zhang } 1658d4002b98SHong Zhang 1659d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[]) 1660d71ae5a4SJacob Faibussowitsch { 1661d4002b98SHong Zhang PetscFunctionBegin; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663d4002b98SHong Zhang } 1664d4002b98SHong Zhang 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha) 1666d71ae5a4SJacob Faibussowitsch { 1667d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)inA->data; 1668d4002b98SHong Zhang MatScalar *aval = a->val; 1669d4002b98SHong Zhang PetscScalar oalpha = alpha; 1670d4002b98SHong Zhang PetscBLASInt one = 1, size; 1671d4002b98SHong Zhang 1672d4002b98SHong Zhang PetscFunctionBegin; 16739566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size)); 1674792fecdfSBarry Smith PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one)); 16759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 16769566063dSJacob Faibussowitsch PetscCall(MatSeqSELLInvalidateDiagonal(inA)); 1677*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 16782d1451d4SHong Zhang if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU; 16792d1451d4SHong Zhang #endif 16803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1681d4002b98SHong Zhang } 1682d4002b98SHong Zhang 1683d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a) 1684d71ae5a4SJacob Faibussowitsch { 1685d4002b98SHong Zhang Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data; 1686d4002b98SHong Zhang 1687d4002b98SHong Zhang PetscFunctionBegin; 168848a46eb9SPierre Jolivet if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL)); 16899566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 16903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1691d4002b98SHong Zhang } 1692d4002b98SHong Zhang 1693d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1694d71ae5a4SJacob Faibussowitsch { 1695d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 1696d4002b98SHong Zhang PetscScalar *x, sum, *t; 1697f4259b30SLisandro Dalcin const MatScalar *idiag = NULL, *mdiag; 1698d4002b98SHong Zhang const PetscScalar *b, *xb; 1699d4002b98SHong Zhang PetscInt n, m = A->rmap->n, i, j, shift; 1700d4002b98SHong Zhang const PetscInt *diag; 1701d4002b98SHong Zhang 1702d4002b98SHong Zhang PetscFunctionBegin; 1703d4002b98SHong Zhang its = its * lits; 1704d4002b98SHong Zhang 1705d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 17069566063dSJacob Faibussowitsch if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A, omega, fshift)); 1707d4002b98SHong Zhang a->fshift = fshift; 1708d4002b98SHong Zhang a->omega = omega; 1709d4002b98SHong Zhang 1710d4002b98SHong Zhang diag = a->diag; 1711d4002b98SHong Zhang t = a->ssor_work; 1712d4002b98SHong Zhang idiag = a->idiag; 1713d4002b98SHong Zhang mdiag = a->mdiag; 1714d4002b98SHong Zhang 17159566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x)); 17169566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b)); 1717d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 171808401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented"); 171908401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented"); 1720aed4548fSBarry Smith PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat"); 1721d4002b98SHong Zhang 1722d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1723d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1724d4002b98SHong Zhang for (i = 0; i < m; i++) { 172507e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1726d4002b98SHong Zhang sum = b[i]; 172707e43b41SHong Zhang n = (diag[i] - shift) / a->sliceheight; 172807e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]]; 1729d4002b98SHong Zhang t[i] = sum; 1730d4002b98SHong Zhang x[i] = sum * idiag[i]; 1731d4002b98SHong Zhang } 1732d4002b98SHong Zhang xb = t; 17339566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); 1734d4002b98SHong Zhang } else xb = b; 1735d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1736d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) { 173707e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1738d4002b98SHong Zhang sum = xb[i]; 173907e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1; 174007e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]]; 1741d4002b98SHong Zhang if (xb == b) { 1742d4002b98SHong Zhang x[i] = sum * idiag[i]; 1743d4002b98SHong Zhang } else { 1744d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1745d4002b98SHong Zhang } 1746d4002b98SHong Zhang } 17479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1748d4002b98SHong Zhang } 1749d4002b98SHong Zhang its--; 1750d4002b98SHong Zhang } 1751d4002b98SHong Zhang while (its--) { 1752d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1753d4002b98SHong Zhang for (i = 0; i < m; i++) { 1754d4002b98SHong Zhang /* lower */ 175507e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1756d4002b98SHong Zhang sum = b[i]; 175707e43b41SHong Zhang n = (diag[i] - shift) / a->sliceheight; 175807e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]]; 1759d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1760d4002b98SHong Zhang /* upper */ 176107e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1; 176207e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]]; 1763d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1764d4002b98SHong Zhang } 1765d4002b98SHong Zhang xb = t; 17669566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 1767d4002b98SHong Zhang } else xb = b; 1768d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1769d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) { 177007e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */ 1771d4002b98SHong Zhang sum = xb[i]; 1772d4002b98SHong Zhang if (xb == b) { 1773d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1774d4002b98SHong Zhang n = a->rlen[i]; 177507e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]]; 1776d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i]; 1777d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 177807e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1; 177907e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]]; 1780d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */ 1781d4002b98SHong Zhang } 1782d4002b98SHong Zhang } 1783d4002b98SHong Zhang if (xb == b) { 17849566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz)); 1785d4002b98SHong Zhang } else { 17869566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */ 1787d4002b98SHong Zhang } 1788d4002b98SHong Zhang } 1789d4002b98SHong Zhang } 17909566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x)); 17919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b)); 17923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1793d4002b98SHong Zhang } 1794d4002b98SHong Zhang 1795d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17966108893eSStefano Zampini MatGetRow_SeqSELL, 17976108893eSStefano Zampini MatRestoreRow_SeqSELL, 1798d4002b98SHong Zhang MatMult_SeqSELL, 1799d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1800d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1801d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1802f4259b30SLisandro Dalcin NULL, 1803f4259b30SLisandro Dalcin NULL, 1804f4259b30SLisandro Dalcin NULL, 1805f4259b30SLisandro Dalcin /* 10*/ NULL, 1806f4259b30SLisandro Dalcin NULL, 1807f4259b30SLisandro Dalcin NULL, 1808d4002b98SHong Zhang MatSOR_SeqSELL, 1809f4259b30SLisandro Dalcin NULL, 1810d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1811d4002b98SHong Zhang MatEqual_SeqSELL, 1812d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1813d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1814f4259b30SLisandro Dalcin NULL, 1815f4259b30SLisandro Dalcin /* 20*/ NULL, 1816d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1817d4002b98SHong Zhang MatSetOption_SeqSELL, 1818d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1819f4259b30SLisandro Dalcin /* 24*/ NULL, 1820f4259b30SLisandro Dalcin NULL, 1821f4259b30SLisandro Dalcin NULL, 1822f4259b30SLisandro Dalcin NULL, 1823f4259b30SLisandro Dalcin NULL, 1824d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1825f4259b30SLisandro Dalcin NULL, 1826f4259b30SLisandro Dalcin NULL, 1827f4259b30SLisandro Dalcin NULL, 1828f4259b30SLisandro Dalcin NULL, 1829d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1830f4259b30SLisandro Dalcin NULL, 1831f4259b30SLisandro Dalcin NULL, 1832f4259b30SLisandro Dalcin NULL, 1833f4259b30SLisandro Dalcin NULL, 1834f4259b30SLisandro Dalcin /* 39*/ NULL, 1835f4259b30SLisandro Dalcin NULL, 1836f4259b30SLisandro Dalcin NULL, 1837d4002b98SHong Zhang MatGetValues_SeqSELL, 1838d4002b98SHong Zhang MatCopy_SeqSELL, 1839f4259b30SLisandro Dalcin /* 44*/ NULL, 1840d4002b98SHong Zhang MatScale_SeqSELL, 1841d4002b98SHong Zhang MatShift_SeqSELL, 1842f4259b30SLisandro Dalcin NULL, 1843f4259b30SLisandro Dalcin NULL, 1844f4259b30SLisandro Dalcin /* 49*/ NULL, 1845f4259b30SLisandro Dalcin NULL, 1846f4259b30SLisandro Dalcin NULL, 1847f4259b30SLisandro Dalcin NULL, 1848f4259b30SLisandro Dalcin NULL, 1849d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1850f4259b30SLisandro Dalcin NULL, 1851f4259b30SLisandro Dalcin NULL, 1852f4259b30SLisandro Dalcin NULL, 1853f4259b30SLisandro Dalcin NULL, 1854f4259b30SLisandro Dalcin /* 59*/ NULL, 1855d4002b98SHong Zhang MatDestroy_SeqSELL, 1856d4002b98SHong Zhang MatView_SeqSELL, 1857f4259b30SLisandro Dalcin NULL, 1858f4259b30SLisandro Dalcin NULL, 1859f4259b30SLisandro Dalcin /* 64*/ NULL, 1860f4259b30SLisandro Dalcin NULL, 1861f4259b30SLisandro Dalcin NULL, 1862f4259b30SLisandro Dalcin NULL, 1863f4259b30SLisandro Dalcin NULL, 1864f4259b30SLisandro Dalcin /* 69*/ NULL, 1865f4259b30SLisandro Dalcin NULL, 1866f4259b30SLisandro Dalcin NULL, 1867f4259b30SLisandro Dalcin NULL, 1868f4259b30SLisandro Dalcin NULL, 1869f4259b30SLisandro Dalcin /* 74*/ NULL, 1870d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1871f4259b30SLisandro Dalcin NULL, 1872f4259b30SLisandro Dalcin NULL, 1873f4259b30SLisandro Dalcin NULL, 1874f4259b30SLisandro Dalcin /* 79*/ NULL, 1875f4259b30SLisandro Dalcin NULL, 1876f4259b30SLisandro Dalcin NULL, 1877f4259b30SLisandro Dalcin NULL, 1878f4259b30SLisandro Dalcin NULL, 1879f4259b30SLisandro Dalcin /* 84*/ NULL, 1880f4259b30SLisandro Dalcin NULL, 1881f4259b30SLisandro Dalcin NULL, 1882f4259b30SLisandro Dalcin NULL, 1883f4259b30SLisandro Dalcin NULL, 1884f4259b30SLisandro Dalcin /* 89*/ NULL, 1885f4259b30SLisandro Dalcin NULL, 1886f4259b30SLisandro Dalcin NULL, 1887f4259b30SLisandro Dalcin NULL, 1888f4259b30SLisandro Dalcin NULL, 1889f4259b30SLisandro Dalcin /* 94*/ NULL, 1890f4259b30SLisandro Dalcin NULL, 1891f4259b30SLisandro Dalcin NULL, 1892f4259b30SLisandro Dalcin NULL, 1893f4259b30SLisandro Dalcin NULL, 1894f4259b30SLisandro Dalcin /* 99*/ NULL, 1895f4259b30SLisandro Dalcin NULL, 1896f4259b30SLisandro Dalcin NULL, 1897d4002b98SHong Zhang MatConjugate_SeqSELL, 1898f4259b30SLisandro Dalcin NULL, 1899f4259b30SLisandro Dalcin /*104*/ NULL, 1900f4259b30SLisandro Dalcin NULL, 1901f4259b30SLisandro Dalcin NULL, 1902f4259b30SLisandro Dalcin NULL, 1903f4259b30SLisandro Dalcin NULL, 1904f4259b30SLisandro Dalcin /*109*/ NULL, 1905f4259b30SLisandro Dalcin NULL, 1906f4259b30SLisandro Dalcin NULL, 1907f4259b30SLisandro Dalcin NULL, 1908d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1909f4259b30SLisandro Dalcin /*114*/ NULL, 1910f4259b30SLisandro Dalcin NULL, 1911f4259b30SLisandro Dalcin NULL, 1912f4259b30SLisandro Dalcin NULL, 1913f4259b30SLisandro Dalcin NULL, 1914f4259b30SLisandro Dalcin /*119*/ NULL, 1915f4259b30SLisandro Dalcin NULL, 1916f4259b30SLisandro Dalcin NULL, 1917f4259b30SLisandro Dalcin NULL, 1918f4259b30SLisandro Dalcin NULL, 1919f4259b30SLisandro Dalcin /*124*/ NULL, 1920f4259b30SLisandro Dalcin NULL, 1921f4259b30SLisandro Dalcin NULL, 1922f4259b30SLisandro Dalcin NULL, 1923f4259b30SLisandro Dalcin NULL, 1924f4259b30SLisandro Dalcin /*129*/ NULL, 1925f4259b30SLisandro Dalcin NULL, 1926f4259b30SLisandro Dalcin NULL, 1927f4259b30SLisandro Dalcin NULL, 1928f4259b30SLisandro Dalcin NULL, 1929f4259b30SLisandro Dalcin /*134*/ NULL, 1930f4259b30SLisandro Dalcin NULL, 1931f4259b30SLisandro Dalcin NULL, 1932f4259b30SLisandro Dalcin NULL, 1933f4259b30SLisandro Dalcin NULL, 1934f4259b30SLisandro Dalcin /*139*/ NULL, 1935f4259b30SLisandro Dalcin NULL, 1936f4259b30SLisandro Dalcin NULL, 1937d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1938f4259b30SLisandro Dalcin NULL, 1939d70f29a3SPierre Jolivet /*144*/ NULL, 1940d70f29a3SPierre Jolivet NULL, 1941d70f29a3SPierre Jolivet NULL, 194299a7f59eSMark Adams NULL, 194399a7f59eSMark Adams NULL, 19447fb60732SBarry Smith NULL, 1945dec0b466SHong Zhang /*150*/ NULL, 1946eede4a3fSMark Adams NULL, 1947dec0b466SHong Zhang NULL}; 1948d4002b98SHong Zhang 1949ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1950d71ae5a4SJacob Faibussowitsch { 1951d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1952d4002b98SHong Zhang 1953d4002b98SHong Zhang PetscFunctionBegin; 195428b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1955d4002b98SHong Zhang 1956d4002b98SHong Zhang /* allocate space for values if not already there */ 1957aa624791SPierre Jolivet if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values)); 1958d4002b98SHong Zhang 1959d4002b98SHong Zhang /* copy values over */ 19609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices])); 19613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1962d4002b98SHong Zhang } 1963d4002b98SHong Zhang 1964ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1965d71ae5a4SJacob Faibussowitsch { 1966d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 1967d4002b98SHong Zhang 1968d4002b98SHong Zhang PetscFunctionBegin; 196928b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 197028b400f6SJacob Faibussowitsch PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first"); 19719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices])); 19723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1973d4002b98SHong Zhang } 1974d4002b98SHong Zhang 1975ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio) 197607e43b41SHong Zhang { 197707e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 197807e43b41SHong Zhang 197907e43b41SHong Zhang PetscFunctionBegin; 198007e43b41SHong Zhang if (a->totalslices && a->sliidx[a->totalslices]) { 198107e43b41SHong Zhang *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices]; 198207e43b41SHong Zhang } else { 198307e43b41SHong Zhang *ratio = 0.0; 198407e43b41SHong Zhang } 198507e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 198607e43b41SHong Zhang } 198707e43b41SHong Zhang 1988ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth) 198907e43b41SHong Zhang { 199007e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 199107e43b41SHong Zhang PetscInt i, current_slicewidth; 199207e43b41SHong Zhang 199307e43b41SHong Zhang PetscFunctionBegin; 199407e43b41SHong Zhang *slicewidth = 0; 199507e43b41SHong Zhang for (i = 0; i < a->totalslices; i++) { 199607e43b41SHong Zhang current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight; 199707e43b41SHong Zhang if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth; 199807e43b41SHong Zhang } 199907e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 200007e43b41SHong Zhang } 200107e43b41SHong Zhang 2002ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth) 200307e43b41SHong Zhang { 200407e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 200507e43b41SHong Zhang 200607e43b41SHong Zhang PetscFunctionBegin; 200707e43b41SHong Zhang *slicewidth = 0; 200807e43b41SHong Zhang if (a->totalslices) { *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices; } 200907e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 201007e43b41SHong Zhang } 201107e43b41SHong Zhang 2012ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetVarSliceSize_SeqSELL(Mat mat, PetscReal *variance) 2013b921024eSHong Zhang { 2014b921024eSHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data; 2015b921024eSHong Zhang PetscReal mean; 2016b921024eSHong Zhang PetscInt i, totalslices = a->totalslices, *sliidx = a->sliidx; 2017b921024eSHong Zhang 2018b921024eSHong Zhang PetscFunctionBegin; 2019b921024eSHong Zhang *variance = 0; 2020b921024eSHong Zhang if (totalslices) { 2021b921024eSHong Zhang mean = (PetscReal)sliidx[totalslices] / totalslices; 2022b921024eSHong Zhang for (i = 1; i <= totalslices; i++) { *variance += ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) * ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) / totalslices; } 2023b921024eSHong Zhang } 2024b921024eSHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 2025b921024eSHong Zhang } 2026b921024eSHong Zhang 2027ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight) 202807e43b41SHong Zhang { 202907e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 203007e43b41SHong Zhang 203107e43b41SHong Zhang PetscFunctionBegin; 203207e43b41SHong Zhang if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS); 203307e43b41SHong Zhang PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight); 203407e43b41SHong Zhang a->sliceheight = sliceheight; 2035*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 2036*773bf0f6SHong Zhang PetscCheck(PetscMax(DEVICE_MEM_ALIGN, sliceheight) % PetscMin(DEVICE_MEM_ALIGN, sliceheight) == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "The slice height is not compatible with DEVICE_MEM_ALIGN (one must be divisible by the other) %" PetscInt_FMT, sliceheight); 20374e58db63SHong Zhang #endif 203807e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 203907e43b41SHong Zhang } 204007e43b41SHong Zhang 2041d4002b98SHong Zhang /*@C 204207e43b41SHong Zhang MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix. 204307e43b41SHong Zhang 204407e43b41SHong Zhang Not Collective 204507e43b41SHong Zhang 204607e43b41SHong Zhang Input Parameter: 204707e43b41SHong Zhang . A - a MATSEQSELL matrix 204807e43b41SHong Zhang 204907e43b41SHong Zhang Output Parameter: 205007e43b41SHong Zhang . ratio - ratio of number of padded zeros to number of allocated elements 205107e43b41SHong Zhang 205207e43b41SHong Zhang Level: intermediate 20532920cce0SJacob Faibussowitsch 20542920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()` 205507e43b41SHong Zhang @*/ 205607e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio) 205707e43b41SHong Zhang { 205807e43b41SHong Zhang PetscFunctionBegin; 205907e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio)); 206007e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 206107e43b41SHong Zhang } 206207e43b41SHong Zhang 206307e43b41SHong Zhang /*@C 206407e43b41SHong Zhang MatSeqSELLGetMaxSliceWidth - returns the maximum slice width. 206507e43b41SHong Zhang 206607e43b41SHong Zhang Not Collective 206707e43b41SHong Zhang 206807e43b41SHong Zhang Input Parameter: 206907e43b41SHong Zhang . A - a MATSEQSELL matrix 207007e43b41SHong Zhang 207107e43b41SHong Zhang Output Parameter: 207207e43b41SHong Zhang . slicewidth - maximum slice width 207307e43b41SHong Zhang 207407e43b41SHong Zhang Level: intermediate 20752920cce0SJacob Faibussowitsch 20762920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()` 207707e43b41SHong Zhang @*/ 207807e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth) 207907e43b41SHong Zhang { 208007e43b41SHong Zhang PetscFunctionBegin; 208107e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth)); 208207e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 208307e43b41SHong Zhang } 208407e43b41SHong Zhang 208507e43b41SHong Zhang /*@C 208607e43b41SHong Zhang MatSeqSELLGetAvgSliceWidth - returns the average slice width. 208707e43b41SHong Zhang 208807e43b41SHong Zhang Not Collective 208907e43b41SHong Zhang 209007e43b41SHong Zhang Input Parameter: 209107e43b41SHong Zhang . A - a MATSEQSELL matrix 209207e43b41SHong Zhang 209307e43b41SHong Zhang Output Parameter: 209407e43b41SHong Zhang . slicewidth - average slice width 209507e43b41SHong Zhang 209607e43b41SHong Zhang Level: intermediate 20972920cce0SJacob Faibussowitsch 20982920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetMaxSliceWidth()` 209907e43b41SHong Zhang @*/ 210007e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth) 210107e43b41SHong Zhang { 210207e43b41SHong Zhang PetscFunctionBegin; 210307e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth)); 210407e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 210507e43b41SHong Zhang } 210607e43b41SHong Zhang 210707e43b41SHong Zhang /*@C 210807e43b41SHong Zhang MatSeqSELLSetSliceHeight - sets the slice height. 210907e43b41SHong Zhang 211007e43b41SHong Zhang Not Collective 211107e43b41SHong Zhang 211207e43b41SHong Zhang Input Parameters: 211307e43b41SHong Zhang + A - a MATSEQSELL matrix 211407e43b41SHong Zhang - sliceheight - slice height 211507e43b41SHong Zhang 211607e43b41SHong Zhang Notes: 211707e43b41SHong Zhang You cannot change the slice height once it have been set. 211807e43b41SHong Zhang 211907e43b41SHong Zhang The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called. 212007e43b41SHong Zhang 212107e43b41SHong Zhang Level: intermediate 21222920cce0SJacob Faibussowitsch 21232920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetVarSliceSize()` 212407e43b41SHong Zhang @*/ 212507e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight) 212607e43b41SHong Zhang { 212707e43b41SHong Zhang PetscFunctionBegin; 212807e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight)); 212907e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 213007e43b41SHong Zhang } 213107e43b41SHong Zhang 213207e43b41SHong Zhang /*@C 213307e43b41SHong Zhang MatSeqSELLGetVarSliceSize - returns the variance of the slice size. 213407e43b41SHong Zhang 213507e43b41SHong Zhang Not Collective 213607e43b41SHong Zhang 213707e43b41SHong Zhang Input Parameter: 213807e43b41SHong Zhang . A - a MATSEQSELL matrix 213907e43b41SHong Zhang 214007e43b41SHong Zhang Output Parameter: 214107e43b41SHong Zhang . variance - variance of the slice size 214207e43b41SHong Zhang 214307e43b41SHong Zhang Level: intermediate 21442920cce0SJacob Faibussowitsch 21452920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLSetSliceHeight()` 214607e43b41SHong Zhang @*/ 214707e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance) 214807e43b41SHong Zhang { 214907e43b41SHong Zhang PetscFunctionBegin; 215007e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance)); 215107e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 215207e43b41SHong Zhang } 215307e43b41SHong Zhang 21542d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 21552d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat); 21562d1451d4SHong Zhang #endif 2157*773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP) 2158*773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLHIP(Mat); 2159*773bf0f6SHong Zhang #endif 21602d1451d4SHong Zhang 2161d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 2162d71ae5a4SJacob Faibussowitsch { 2163d4002b98SHong Zhang Mat_SeqSELL *b; 2164d4002b98SHong Zhang PetscMPIInt size; 2165d4002b98SHong Zhang 2166d4002b98SHong Zhang PetscFunctionBegin; 21679566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(citation, &cited)); 21689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 216908401ef6SPierre Jolivet PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1"); 2170d4002b98SHong Zhang 21714dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 2172d4002b98SHong Zhang 2173d4002b98SHong Zhang B->data = (void *)b; 2174aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2175d4002b98SHong Zhang 2176f4259b30SLisandro Dalcin b->row = NULL; 2177f4259b30SLisandro Dalcin b->col = NULL; 2178f4259b30SLisandro Dalcin b->icol = NULL; 2179d4002b98SHong Zhang b->reallocs = 0; 2180d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 2181d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 2182d4002b98SHong Zhang b->nonew = 0; 2183f4259b30SLisandro Dalcin b->diag = NULL; 2184f4259b30SLisandro Dalcin b->solve_work = NULL; 2185f4259b30SLisandro Dalcin B->spptr = NULL; 2186f4259b30SLisandro Dalcin b->saved_values = NULL; 2187f4259b30SLisandro Dalcin b->idiag = NULL; 2188f4259b30SLisandro Dalcin b->mdiag = NULL; 2189f4259b30SLisandro Dalcin b->ssor_work = NULL; 2190d4002b98SHong Zhang b->omega = 1.0; 2191d4002b98SHong Zhang b->fshift = 0.0; 2192d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 2193d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 219407e43b41SHong Zhang b->sliceheight = 0; 2195d4002b98SHong Zhang 21969566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL)); 21979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL)); 21989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL)); 21999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL)); 22009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL)); 22019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL)); 2202b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqaij_C", MatConvert_SeqSELL_SeqAIJ)); 22032d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA) 2204b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellcuda_C", MatConvert_SeqSELL_SeqSELLCUDA)); 22052d1451d4SHong Zhang #endif 2206*773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP) 2207*773bf0f6SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellhip_C", MatConvert_SeqSELL_SeqSELLHIP)); 2208*773bf0f6SHong Zhang #endif 220907e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL)); 221007e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL)); 221107e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL)); 2212b921024eSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetVarSliceSize_C", MatSeqSELLGetVarSliceSize_SeqSELL)); 221307e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL)); 221407e43b41SHong Zhang 221507e43b41SHong Zhang PetscObjectOptionsBegin((PetscObject)B); 221607e43b41SHong Zhang { 221707e43b41SHong Zhang PetscInt newsh = -1; 221807e43b41SHong Zhang PetscBool flg; 2219*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 222090d2215bSHong Zhang PetscInt chunksize = 0; 222190d2215bSHong Zhang #endif 222207e43b41SHong Zhang 222307e43b41SHong Zhang PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg)); 222407e43b41SHong Zhang if (flg) { PetscCall(MatSeqSELLSetSliceHeight(B, newsh)); } 2225*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 2226*773bf0f6SHong Zhang PetscCall(PetscOptionsInt("-mat_sell_chunk_size", "Set the chunksize for load-balanced CUDA/HIP kernels. Choices include 64,128,256,512,1024", NULL, chunksize, &chunksize, &flg)); 222790d2215bSHong Zhang if (flg) { 222890d2215bSHong Zhang PetscCheck(chunksize >= 64 && chunksize <= 1024 && chunksize % 64 == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "chunksize must be a number in {64,128,256,512,1024}: value %" PetscInt_FMT, chunksize); 222990d2215bSHong Zhang b->chunksize = chunksize; 223090d2215bSHong Zhang } 223190d2215bSHong Zhang #endif 223207e43b41SHong Zhang } 223307e43b41SHong Zhang PetscOptionsEnd(); 22343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2235d4002b98SHong Zhang } 2236d4002b98SHong Zhang 2237d4002b98SHong Zhang /* 2238d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 2239d4002b98SHong Zhang */ 2240ba38deedSJacob Faibussowitsch static PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace) 2241d71ae5a4SJacob Faibussowitsch { 2242ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data; 2243d4002b98SHong Zhang PetscInt i, m = A->rmap->n; 2244d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 2245d4002b98SHong Zhang 2246d4002b98SHong Zhang PetscFunctionBegin; 2247d4002b98SHong Zhang C->factortype = A->factortype; 2248f4259b30SLisandro Dalcin c->row = NULL; 2249f4259b30SLisandro Dalcin c->col = NULL; 2250f4259b30SLisandro Dalcin c->icol = NULL; 2251d4002b98SHong Zhang c->reallocs = 0; 2252d4002b98SHong Zhang C->assembled = PETSC_TRUE; 2253d4002b98SHong Zhang 22549566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &C->rmap)); 22559566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &C->cmap)); 2256d4002b98SHong Zhang 2257*773bf0f6SHong Zhang c->sliceheight = a->sliceheight; 2258*773bf0f6SHong Zhang PetscCall(PetscMalloc1(c->sliceheight * totalslices, &c->rlen)); 22599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx)); 2260d4002b98SHong Zhang 2261d4002b98SHong Zhang for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i]; 2262d4002b98SHong Zhang for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i]; 2263d4002b98SHong Zhang 2264d4002b98SHong Zhang /* allocate the matrix space */ 2265d4002b98SHong Zhang if (mallocmatspace) { 22669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx)); 2267d4002b98SHong Zhang 2268d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2269d4002b98SHong Zhang 2270d4002b98SHong Zhang if (m > 0) { 22719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat)); 2272d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 22739566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat)); 2274d4002b98SHong Zhang } else { 22759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->val, a->maxallocmat)); 2276d4002b98SHong Zhang } 2277d4002b98SHong Zhang } 2278d4002b98SHong Zhang } 2279d4002b98SHong Zhang 2280d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2281d4002b98SHong Zhang c->roworiented = a->roworiented; 2282d4002b98SHong Zhang c->nonew = a->nonew; 2283d4002b98SHong Zhang if (a->diag) { 22849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &c->diag)); 2285ad540459SPierre Jolivet for (i = 0; i < m; i++) c->diag[i] = a->diag[i]; 2286f4259b30SLisandro Dalcin } else c->diag = NULL; 2287d4002b98SHong Zhang 2288f4259b30SLisandro Dalcin c->solve_work = NULL; 2289f4259b30SLisandro Dalcin c->saved_values = NULL; 2290f4259b30SLisandro Dalcin c->idiag = NULL; 2291f4259b30SLisandro Dalcin c->ssor_work = NULL; 2292d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2293d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2294d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2295d4002b98SHong Zhang 2296d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2297d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2298d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2299d4002b98SHong Zhang c->nz = a->nz; 2300d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2301d4002b98SHong Zhang 2302d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2303d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2304d4002b98SHong Zhang 23059566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist)); 23063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2307d4002b98SHong Zhang } 2308d4002b98SHong Zhang 2309d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B) 2310d71ae5a4SJacob Faibussowitsch { 2311d4002b98SHong Zhang PetscFunctionBegin; 23129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B)); 23139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n)); 231448a46eb9SPierre Jolivet if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A)); 23159566063dSJacob Faibussowitsch PetscCall(MatSetType(*B, ((PetscObject)A)->type_name)); 23169566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE)); 23173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2318d4002b98SHong Zhang } 2319d4002b98SHong Zhang 2320ed73aabaSBarry Smith /*MC 2321ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices, 23221d27aa22SBarry Smith based on the sliced Ellpack format, {cite}`zhangellpack2018` 2323ed73aabaSBarry Smith 232420f4b53cSBarry Smith Options Database Key: 232511a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()` 2326ed73aabaSBarry Smith 2327ed73aabaSBarry Smith Level: beginner 2328ed73aabaSBarry Smith 232967be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ` 2330ed73aabaSBarry Smith M*/ 2331ed73aabaSBarry Smith 2332ed73aabaSBarry Smith /*MC 23331d27aa22SBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices, {cite}`zhangellpack2018` 2334ed73aabaSBarry Smith 233511a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator, 233611a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators, 233711a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported 2338ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 2339ed73aabaSBarry Smith the above preallocation routines for simplicity. 2340ed73aabaSBarry Smith 234120f4b53cSBarry Smith Options Database Key: 2342ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions() 2343ed73aabaSBarry Smith 2344ed73aabaSBarry Smith Level: beginner 2345ed73aabaSBarry Smith 2346ed73aabaSBarry Smith Notes: 23477de69702SBarry Smith This format is only supported for real scalars, double precision, and 32-bit indices (the defaults). 2348ed73aabaSBarry Smith 2349ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of 2350ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement. 2351ed73aabaSBarry Smith 2352ed73aabaSBarry Smith Developer Notes: 2353ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance. 2354ed73aabaSBarry Smith 2355ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8 2356ed73aabaSBarry Smith .vb 2357ed73aabaSBarry Smith (2 0 3 4) 2358ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0) 2359ed73aabaSBarry Smith (0 0 7 8) 2360ed73aabaSBarry Smith (0 0 9 9) 2361ed73aabaSBarry Smith 2362ed73aabaSBarry Smith symbolically the Ellpack format can be written as 2363ed73aabaSBarry Smith 2364ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |) 2365ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |) 2366ed73aabaSBarry Smith -------- --------- 2367ed73aabaSBarry Smith (7 8 |) (2 3 |) 2368ed73aabaSBarry Smith (9 9 |) (2 3 |) 2369ed73aabaSBarry Smith 2370ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case). 2371ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and 2372ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice. 2373ed73aabaSBarry Smith 2374ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3) 2375ed73aabaSBarry Smith 2376ed73aabaSBarry Smith .ve 2377ed73aabaSBarry Smith 23781d27aa22SBarry Smith See `MatMult_SeqSELL()` for how this format is used with the SIMD operations to achieve high performance. 2379ed73aabaSBarry Smith 238067be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ` 2381ed73aabaSBarry Smith M*/ 2382ed73aabaSBarry Smith 2383d4002b98SHong Zhang /*@C 238411a5261eSBarry Smith MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format. 2385d4002b98SHong Zhang 23862ef1f0ffSBarry Smith Collective 2387d4002b98SHong Zhang 2388d4002b98SHong Zhang Input Parameters: 238911a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 2390d4002b98SHong Zhang . m - number of rows 2391d4002b98SHong Zhang . n - number of columns 239220f4b53cSBarry Smith . rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided 239320f4b53cSBarry Smith - rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL 2394d4002b98SHong Zhang 2395d4002b98SHong Zhang Output Parameter: 2396d4002b98SHong Zhang . A - the matrix 2397d4002b98SHong Zhang 239820f4b53cSBarry Smith Level: intermediate 239920f4b53cSBarry Smith 240020f4b53cSBarry Smith Notes: 240111a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 2402f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 240311a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`] 2404d4002b98SHong Zhang 240520f4b53cSBarry Smith Specify the preallocated storage with either `rlenmax` or `rlen` (not both). 240620f4b53cSBarry Smith Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory 240720f4b53cSBarry Smith allocation. 2408d4002b98SHong Zhang 2409fe59aa6dSJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATMPISELL` 2410d4002b98SHong Zhang @*/ 241120f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A) 2412d71ae5a4SJacob Faibussowitsch { 2413d4002b98SHong Zhang PetscFunctionBegin; 24149566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 24159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 24169566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL)); 241720f4b53cSBarry Smith PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen)); 24183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2419d4002b98SHong Zhang } 2420d4002b98SHong Zhang 2421d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg) 2422d71ae5a4SJacob Faibussowitsch { 2423d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data; 2424d4002b98SHong Zhang PetscInt totalslices = a->totalslices; 2425d4002b98SHong Zhang 2426d4002b98SHong Zhang PetscFunctionBegin; 2427d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2428d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2429d4002b98SHong Zhang *flg = PETSC_FALSE; 24303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2431d4002b98SHong Zhang } 2432d4002b98SHong Zhang /* if the a->colidx are the same */ 24339566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg)); 24343ba16761SJacob Faibussowitsch if (!*flg) PetscFunctionReturn(PETSC_SUCCESS); 2435d4002b98SHong Zhang /* if a->val are the same */ 24369566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg)); 24373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2438d4002b98SHong Zhang } 2439d4002b98SHong Zhang 2440d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2441d71ae5a4SJacob Faibussowitsch { 2442d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2443d4002b98SHong Zhang 2444d4002b98SHong Zhang PetscFunctionBegin; 2445d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 24463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2447d4002b98SHong Zhang } 2448d4002b98SHong Zhang 2449d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A) 2450d71ae5a4SJacob Faibussowitsch { 2451d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2452d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data; 2453d4002b98SHong Zhang PetscInt i; 2454d4002b98SHong Zhang PetscScalar *val = a->val; 2455d4002b98SHong Zhang 2456d4002b98SHong Zhang PetscFunctionBegin; 24572d1451d4SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) { val[i] = PetscConj(val[i]); } 2458*773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM) 24592d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU; 24602d1451d4SHong Zhang #endif 2461d4002b98SHong Zhang #else 2462d4002b98SHong Zhang PetscFunctionBegin; 2463d4002b98SHong Zhang #endif 24643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2465d4002b98SHong Zhang } 2466