xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 90d2215b4f5b865a0e7953289703ce9072a42621)
1d4002b98SHong Zhang 
2d4002b98SHong Zhang /*
3d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
4d4002b98SHong Zhang */
5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I   "petscmat.h"  I*/
6d4002b98SHong Zhang #include <petscblaslapack.h>
7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
8ed73aabaSBarry Smith 
9ed73aabaSBarry Smith static PetscBool  cited      = PETSC_FALSE;
109371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n"
11ed73aabaSBarry Smith                                " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n"
12ed73aabaSBarry Smith                                " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n"
13ed73aabaSBarry Smith                                " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n"
14ed73aabaSBarry Smith                                " year = 2018\n"
15ed73aabaSBarry Smith                                "}\n";
16ed73aabaSBarry Smith 
175f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
184243e2ceSHong Zhang 
19d4002b98SHong Zhang   #include <immintrin.h>
20d4002b98SHong Zhang 
21d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
22d4002b98SHong Zhang     #define _MM_SCALE_8 8
23d4002b98SHong Zhang   #endif
24d4002b98SHong Zhang 
25d4002b98SHong Zhang   #if defined(__AVX512F__)
26d4002b98SHong Zhang     /* these do not work
27d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
28d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
29d4002b98SHong Zhang   */
30d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
31d4002b98SHong Zhang       /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
32ef588d5cSRichard Tran Mills       vec_idx  = _mm256_loadu_si256((__m256i const *)acolidx); \
33ef588d5cSRichard Tran Mills       vec_vals = _mm512_loadu_pd(aval); \
34d4002b98SHong Zhang       vec_x    = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \
35a48a6482SHong Zhang       vec_y    = _mm512_fmadd_pd(vec_x, vec_vals, vec_y)
365f70456aSHong Zhang   #elif defined(__AVX2__) && defined(__FMA__)
37a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
38ef588d5cSRichard Tran Mills       vec_vals = _mm256_loadu_pd(aval); \
39ef588d5cSRichard Tran Mills       vec_idx  = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \
40a48a6482SHong Zhang       vec_x    = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \
41a48a6482SHong Zhang       vec_y    = _mm256_fmadd_pd(vec_x, vec_vals, vec_y)
42d4002b98SHong Zhang   #endif
43d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */
44d4002b98SHong Zhang 
45d4002b98SHong Zhang /*@C
46d4002b98SHong Zhang  MatSeqSELLSetPreallocation - For good matrix assembly performance
4720f4b53cSBarry Smith  the user should preallocate the matrix storage by setting the parameter `nz`
4820f4b53cSBarry Smith  (or the array `nnz`).
49d4002b98SHong Zhang 
50d083f849SBarry Smith  Collective
51d4002b98SHong Zhang 
52d4002b98SHong Zhang  Input Parameters:
5311a5261eSBarry Smith +  B - The `MATSEQSELL` matrix
5420f4b53cSBarry Smith .  rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided
5520f4b53cSBarry Smith -  rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL`
5667be906fSBarry Smith 
5767be906fSBarry Smith  Level: intermediate
58d4002b98SHong Zhang 
59d4002b98SHong Zhang  Notes:
6067be906fSBarry Smith  Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
6167be906fSBarry Smith  Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
6220f4b53cSBarry Smith  allocation.
63d4002b98SHong Zhang 
6411a5261eSBarry Smith  You can call `MatGetInfo()` to get information on how effective the preallocation was;
65d4002b98SHong Zhang  for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
6667be906fSBarry Smith  You can also run with the option `-info` and look for messages with the string
67d4002b98SHong Zhang  malloc in them to see if additional memory allocation was needed.
68d4002b98SHong Zhang 
6927430b45SBarry Smith  Developer Note:
7067be906fSBarry Smith  Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
71d4002b98SHong Zhang  entries or columns indices.
72d4002b98SHong Zhang 
73c7ee91abSRichard Tran Mills  The maximum number of nonzeos in any row should be as accurate as possible.
74c7ee91abSRichard Tran Mills  If it is underestimated, you will get bad performance due to reallocation
7567be906fSBarry Smith  (`MatSeqXSELLReallocateSELL()`).
76d4002b98SHong Zhang 
7767be906fSBarry Smith  .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
78d4002b98SHong Zhang  @*/
79d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[])
80d71ae5a4SJacob Faibussowitsch {
81d4002b98SHong Zhang   PetscFunctionBegin;
82d4002b98SHong Zhang   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
83d4002b98SHong Zhang   PetscValidType(B, 1);
84cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen));
853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86d4002b98SHong Zhang }
87d4002b98SHong Zhang 
88d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[])
89d71ae5a4SJacob Faibussowitsch {
90d4002b98SHong Zhang   Mat_SeqSELL *b;
91d4002b98SHong Zhang   PetscInt     i, j, totalslices;
924e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
934e58db63SHong Zhang   PetscInt rlenmax = 0;
944e58db63SHong Zhang #endif
95d4002b98SHong Zhang   PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE;
96d4002b98SHong Zhang 
97d4002b98SHong Zhang   PetscFunctionBegin;
98d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
99d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
100d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
101d4002b98SHong Zhang     maxallocrow    = 0;
102d4002b98SHong Zhang   }
103d4002b98SHong Zhang 
1049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
1059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
106d4002b98SHong Zhang 
107d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
108d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
10908401ef6SPierre Jolivet   PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow);
110d4002b98SHong Zhang   if (rlen) {
111d4002b98SHong Zhang     for (i = 0; i < B->rmap->n; i++) {
11208401ef6SPierre Jolivet       PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]);
11308401ef6SPierre Jolivet       PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n);
114d4002b98SHong Zhang     }
115d4002b98SHong Zhang   }
116d4002b98SHong Zhang 
117d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
118d4002b98SHong Zhang 
119d4002b98SHong Zhang   b = (Mat_SeqSELL *)B->data;
120d4002b98SHong Zhang 
12107e43b41SHong Zhang   if (!b->sliceheight) { /* not set yet */
12207e43b41SHong Zhang #if defined(PETSC_HAVE_CUDA)
12307e43b41SHong Zhang     b->sliceheight = 16;
12407e43b41SHong Zhang #else
12507e43b41SHong Zhang     b->sliceheight = 8;
12607e43b41SHong Zhang #endif
12707e43b41SHong Zhang   }
12807e43b41SHong Zhang   totalslices    = PetscCeilInt(B->rmap->n, b->sliceheight);
129d4002b98SHong Zhang   b->totalslices = totalslices;
130d4002b98SHong Zhang   if (!skipallocation) {
13107e43b41SHong Zhang     if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n));
132d4002b98SHong Zhang 
133d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
1349566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx));
135d4002b98SHong Zhang     }
136d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
137d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
138d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
1394e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
1404e58db63SHong Zhang       rlenmax = maxallocrow;
1414e58db63SHong Zhang       /* Pad the slice to DEVICE_MEM_ALIGN */
1424e58db63SHong Zhang       while (b->sliceheight * maxallocrow % DEVICE_MEM_ALIGN) maxallocrow++;
1434e58db63SHong Zhang #endif
14407e43b41SHong Zhang       for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow;
145d4002b98SHong Zhang     } else {
1464e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
1474e58db63SHong Zhang       PetscInt mul = DEVICE_MEM_ALIGN / b->sliceheight;
1484e58db63SHong Zhang #endif
149d4002b98SHong Zhang       maxallocrow  = 0;
150d4002b98SHong Zhang       b->sliidx[0] = 0;
151d4002b98SHong Zhang       for (i = 1; i < totalslices; i++) {
152d4002b98SHong Zhang         b->sliidx[i] = 0;
15307e43b41SHong Zhang         for (j = 0; j < b->sliceheight; j++) { b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]); }
1544e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
1554e58db63SHong Zhang         rlenmax = PetscMax(b->sliidx[i], rlenmax);
1564e58db63SHong Zhang         /* Pad the slice to DEVICE_MEM_ALIGN */
1574e58db63SHong Zhang         b->sliidx[i] = ((b->sliidx[i] - 1) / mul + 1) * mul;
1584e58db63SHong Zhang #endif
159d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i], maxallocrow);
16007e43b41SHong Zhang         PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i]));
161d4002b98SHong Zhang       }
162d4002b98SHong Zhang       /* last slice */
163d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
16407e43b41SHong Zhang       for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]);
1654e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
1664e58db63SHong Zhang       rlenmax                = PetscMax(b->sliidx[i], rlenmax);
1674e58db63SHong Zhang       b->sliidx[totalslices] = ((b->sliidx[totalslices] - 1) / mul + 1) * mul;
1684e58db63SHong Zhang #endif
169d4002b98SHong Zhang       maxallocrow            = PetscMax(b->sliidx[totalslices], maxallocrow);
17007e43b41SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices];
171d4002b98SHong Zhang     }
172d4002b98SHong Zhang 
173d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
174d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
1759566063dSJacob Faibussowitsch     PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx));
176d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
1779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx));
178d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
17907e43b41SHong Zhang     PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen));
180d4002b98SHong Zhang 
181d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
182d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
183d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
184d4002b98SHong Zhang   } else {
185d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
186d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
187d4002b98SHong Zhang   }
188d4002b98SHong Zhang 
189d4002b98SHong Zhang   b->nz          = 0;
190d4002b98SHong Zhang   b->maxallocrow = maxallocrow;
1914e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
1924e58db63SHong Zhang   b->rlenmax = rlenmax;
1934e58db63SHong Zhang #else
194d4002b98SHong Zhang   b->rlenmax = maxallocrow;
1954e58db63SHong Zhang #endif
196d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
197d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
1981baa6e33SBarry Smith   if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
200d4002b98SHong Zhang }
201d4002b98SHong Zhang 
202d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
203d71ae5a4SJacob Faibussowitsch {
2046108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2056108893eSStefano Zampini   PetscInt     shift;
2066108893eSStefano Zampini 
2076108893eSStefano Zampini   PetscFunctionBegin;
208aed4548fSBarry Smith   PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row);
2096108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
21007e43b41SHong Zhang   shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight);
2112d1451d4SHong Zhang   if (!a->getrowcols) { PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals)); }
2126108893eSStefano Zampini   if (idx) {
2136108893eSStefano Zampini     PetscInt j;
21407e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j];
2156108893eSStefano Zampini     *idx = a->getrowcols;
2166108893eSStefano Zampini   }
2176108893eSStefano Zampini   if (v) {
2186108893eSStefano Zampini     PetscInt j;
21907e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j];
2206108893eSStefano Zampini     *v = a->getrowvals;
2216108893eSStefano Zampini   }
2223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2236108893eSStefano Zampini }
2246108893eSStefano Zampini 
225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
226d71ae5a4SJacob Faibussowitsch {
2276108893eSStefano Zampini   PetscFunctionBegin;
2283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2296108893eSStefano Zampini }
2306108893eSStefano Zampini 
231d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
232d71ae5a4SJacob Faibussowitsch {
233d4002b98SHong Zhang   Mat          B;
234d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
235e3f1f374SStefano Zampini   PetscInt     i;
236d4002b98SHong Zhang 
237d4002b98SHong Zhang   PetscFunctionBegin;
238ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
239ad013a7bSRichard Tran Mills     B = *newmat;
2409566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
241ad013a7bSRichard Tran Mills   } else {
2429566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2439566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2449566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQAIJ));
2459566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen));
246ad013a7bSRichard Tran Mills   }
247d4002b98SHong Zhang 
248e3f1f374SStefano Zampini   for (i = 0; i < A->rmap->n; i++) {
249e108cb99SStefano Zampini     PetscInt     nz = 0, *cols = NULL;
250e108cb99SStefano Zampini     PetscScalar *vals = NULL;
251e3f1f374SStefano Zampini 
2529566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals));
2539566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES));
2549566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals));
255d4002b98SHong Zhang   }
256e3f1f374SStefano Zampini 
2579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
259d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
260d4002b98SHong Zhang 
261d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2629566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
263d4002b98SHong Zhang   } else {
264d4002b98SHong Zhang     *newmat = B;
265d4002b98SHong Zhang   }
2663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
267d4002b98SHong Zhang }
268d4002b98SHong Zhang 
269d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
270d4002b98SHong Zhang 
271d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
272d71ae5a4SJacob Faibussowitsch {
273d4002b98SHong Zhang   Mat                B;
274d4002b98SHong Zhang   Mat_SeqAIJ        *a  = (Mat_SeqAIJ *)A->data;
275d4002b98SHong Zhang   PetscInt          *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols;
276d4002b98SHong Zhang   const PetscInt    *cols;
277d4002b98SHong Zhang   const PetscScalar *vals;
278d4002b98SHong Zhang 
279d4002b98SHong Zhang   PetscFunctionBegin;
280ad013a7bSRichard Tran Mills 
281ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
282ad013a7bSRichard Tran Mills     B = *newmat;
283ad013a7bSRichard Tran Mills   } else {
284d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) || !a->ilen) {
2859566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(m, &rowlengths));
286ad540459SPierre Jolivet       for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i];
287d5e5b2e5SBarry Smith     }
288d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) && a->ilen) {
289d5e5b2e5SBarry Smith       PetscBool eq;
2909566063dSJacob Faibussowitsch       PetscCall(PetscMemcmp(rowlengths, a->ilen, m * sizeof(PetscInt), &eq));
29128b400f6SJacob Faibussowitsch       PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect");
2929566063dSJacob Faibussowitsch       PetscCall(PetscFree(rowlengths));
293d5e5b2e5SBarry Smith       rowlengths = a->ilen;
294d5e5b2e5SBarry Smith     } else if (a->ilen) rowlengths = a->ilen;
2959566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2969566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, m, n, m, n));
2979566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQSELL));
2989566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths));
2999566063dSJacob Faibussowitsch     if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths));
300ad013a7bSRichard Tran Mills   }
301d4002b98SHong Zhang 
302d4002b98SHong Zhang   for (row = 0; row < m; row++) {
3039566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
3049566063dSJacob Faibussowitsch     PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES));
3059566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
306d4002b98SHong Zhang   }
3079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
3089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
309d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
310d4002b98SHong Zhang 
311d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
3129566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
313d4002b98SHong Zhang   } else {
314d4002b98SHong Zhang     *newmat = B;
315d4002b98SHong Zhang   }
3163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
317d4002b98SHong Zhang }
318d4002b98SHong Zhang 
319d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy)
320d71ae5a4SJacob Faibussowitsch {
321d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
322d4002b98SHong Zhang   PetscScalar       *y;
323d4002b98SHong Zhang   const PetscScalar *x;
324d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
325d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
326d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
3277285fed1SHong Zhang   PetscInt           i, j;
328d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
329d4002b98SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
330d4002b98SHong Zhang   __m256i  vec_idx;
331d4002b98SHong Zhang   __mmask8 mask;
332d4002b98SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
333d4002b98SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
3345f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
335a48a6482SHong Zhang   __m128i   vec_idx;
336a48a6482SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
337a48a6482SHong Zhang   MatScalar yval;
338a48a6482SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
33921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
340d4002b98SHong Zhang   __m128d   vec_x_tmp;
341d4002b98SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
342d4002b98SHong Zhang   MatScalar yval;
343d4002b98SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
344d4002b98SHong Zhang #else
34507e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
34607e43b41SHong Zhang   PetscScalar *sum;
347d4002b98SHong Zhang #endif
348d4002b98SHong Zhang 
349d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
350d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
351d4002b98SHong Zhang #endif
352d4002b98SHong Zhang 
353d4002b98SHong Zhang   PetscFunctionBegin;
3549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
3559566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy, &y));
356d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
35707e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
358d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
359d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
360d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
361d4002b98SHong Zhang 
362d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
363d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
364d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
365d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
366d4002b98SHong Zhang 
367da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
368d4002b98SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
369d4002b98SHong Zhang     case 3:
370d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3719371c9d4SSatish Balay       acolidx += 8;
3729371c9d4SSatish Balay       aval += 8;
373d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3749371c9d4SSatish Balay       acolidx += 8;
3759371c9d4SSatish Balay       aval += 8;
376d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
3779371c9d4SSatish Balay       acolidx += 8;
3789371c9d4SSatish Balay       aval += 8;
379d4002b98SHong Zhang       j += 3;
380d4002b98SHong Zhang       break;
381d4002b98SHong Zhang     case 2:
382d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3839371c9d4SSatish Balay       acolidx += 8;
3849371c9d4SSatish Balay       aval += 8;
385d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3869371c9d4SSatish Balay       acolidx += 8;
3879371c9d4SSatish Balay       aval += 8;
388d4002b98SHong Zhang       j += 2;
389d4002b98SHong Zhang       break;
390d4002b98SHong Zhang     case 1:
391d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3929371c9d4SSatish Balay       acolidx += 8;
3939371c9d4SSatish Balay       aval += 8;
394d4002b98SHong Zhang       j += 1;
395d4002b98SHong Zhang       break;
396d4002b98SHong Zhang     }
397d4002b98SHong Zhang   #pragma novector
398d4002b98SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
399d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4009371c9d4SSatish Balay       acolidx += 8;
4019371c9d4SSatish Balay       aval += 8;
402d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
4039371c9d4SSatish Balay       acolidx += 8;
4049371c9d4SSatish Balay       aval += 8;
405d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
4069371c9d4SSatish Balay       acolidx += 8;
4079371c9d4SSatish Balay       aval += 8;
408d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
4099371c9d4SSatish Balay       acolidx += 8;
4109371c9d4SSatish Balay       aval += 8;
411d4002b98SHong Zhang     }
412d4002b98SHong Zhang 
413d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
414d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
415d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
416d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
417d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
418ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y);
419d4002b98SHong Zhang     } else {
420ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&y[8 * i], vec_y);
421d4002b98SHong Zhang     }
422d4002b98SHong Zhang   }
4235f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
42407e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
425a48a6482SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
426a48a6482SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
427a48a6482SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
428a48a6482SHong Zhang 
429a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
430a48a6482SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
431a48a6482SHong Zhang       rows_left = A->rmap->n - 8 * i;
432a48a6482SHong Zhang       for (r = 0; r < rows_left; ++r) {
433a48a6482SHong Zhang         yval       = (MatScalar)0;
434a48a6482SHong Zhang         row        = 8 * i + r;
435a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
436a48a6482SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
437a48a6482SHong Zhang         y[row] = yval;
438a48a6482SHong Zhang       }
439a48a6482SHong Zhang       break;
440a48a6482SHong Zhang     }
441a48a6482SHong Zhang 
442a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
443a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
444a48a6482SHong Zhang 
445a48a6482SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
446a48a6482SHong Zhang   #pragma novector
447a48a6482SHong Zhang   #pragma unroll(2)
448a48a6482SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
449a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4509371c9d4SSatish Balay       aval += 4;
4519371c9d4SSatish Balay       acolidx += 4;
452a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2);
4539371c9d4SSatish Balay       aval += 4;
4549371c9d4SSatish Balay       acolidx += 4;
455a48a6482SHong Zhang     }
456a48a6482SHong Zhang 
457ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8, vec_y);
458ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
459a48a6482SHong Zhang   }
46021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
46107e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
462d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
463d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
464d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
465d4002b98SHong Zhang 
466d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
467d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
468d4002b98SHong Zhang 
469d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
470d4002b98SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
471d4002b98SHong Zhang       rows_left = A->rmap->n - 8 * i;
472d4002b98SHong Zhang       for (r = 0; r < rows_left; ++r) {
473d4002b98SHong Zhang         yval       = (MatScalar)0;
474d4002b98SHong Zhang         row        = 8 * i + r;
475d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
476d4002b98SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
477d4002b98SHong Zhang         y[row] = yval;
478d4002b98SHong Zhang       }
479d4002b98SHong Zhang       break;
480d4002b98SHong Zhang     }
481d4002b98SHong Zhang 
482d4002b98SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
483a48a6482SHong Zhang   #pragma novector
484a48a6482SHong Zhang   #pragma unroll(2)
4857285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
486d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
487165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
488d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
489d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
490d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
491d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
492d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
493d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
494d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
495d4002b98SHong Zhang       aval += 4;
496d4002b98SHong Zhang 
497d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
498d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
499d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
500d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
501d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
502d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
503d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
504d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
505d4002b98SHong Zhang       aval += 4;
506d4002b98SHong Zhang     }
507d4002b98SHong Zhang 
508d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8, vec_y);
509d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
510d4002b98SHong Zhang   }
511d4002b98SHong Zhang #else
51207e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
513d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
51407e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
5152d1451d4SHong Zhang       sum[j] = 0.0;
51607e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
517d4002b98SHong Zhang     }
51807e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */
51907e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j];
520d4002b98SHong Zhang     } else {
52107e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j];
522d4002b98SHong Zhang     }
523d4002b98SHong Zhang   }
52407e43b41SHong Zhang   PetscCall(PetscFree(sum));
525d4002b98SHong Zhang #endif
526d4002b98SHong Zhang 
5279566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */
5289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
5299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy, &y));
5303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
531d4002b98SHong Zhang }
532d4002b98SHong Zhang 
533d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz)
535d71ae5a4SJacob Faibussowitsch {
536d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
537d4002b98SHong Zhang   PetscScalar       *y, *z;
538d4002b98SHong Zhang   const PetscScalar *x;
539d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
540d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
541d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
542d4002b98SHong Zhang   PetscInt           i, j;
543d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5447285fed1SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
545d4002b98SHong Zhang   __m256i  vec_idx;
546d4002b98SHong Zhang   __mmask8 mask;
5477285fed1SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
5487285fed1SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
54921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5507285fed1SHong Zhang   __m128d   vec_x_tmp;
5517285fed1SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
5527285fed1SHong Zhang   MatScalar yval;
5537285fed1SHong Zhang   PetscInt  r, row, nnz_in_row;
554d4002b98SHong Zhang #else
55507e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
55607e43b41SHong Zhang   PetscScalar *sum;
557d4002b98SHong Zhang #endif
558d4002b98SHong Zhang 
559d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
560d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
561d4002b98SHong Zhang #endif
562d4002b98SHong Zhang 
563d4002b98SHong Zhang   PetscFunctionBegin;
5642d1451d4SHong Zhang   if (!a->nz) {
5652d1451d4SHong Zhang     PetscCall(VecCopy(yy, zz));
5662d1451d4SHong Zhang     PetscFunctionReturn(PETSC_SUCCESS);
5672d1451d4SHong Zhang   }
5689566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
5699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayPair(yy, zz, &y, &z));
570d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
57107e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
5727285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
5737285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5747285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5757285fed1SHong Zhang 
576d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
577d4002b98SHong Zhang       mask  = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
578ef588d5cSRichard Tran Mills       vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]);
5797285fed1SHong Zhang     } else {
580ef588d5cSRichard Tran Mills       vec_y = _mm512_loadu_pd(&y[8 * i]);
5817285fed1SHong Zhang     }
5827285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5837285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5847285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5857285fed1SHong Zhang 
586da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
5877285fed1SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
5887285fed1SHong Zhang     case 3:
5897285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
5909371c9d4SSatish Balay       acolidx += 8;
5919371c9d4SSatish Balay       aval += 8;
5927285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
5939371c9d4SSatish Balay       acolidx += 8;
5949371c9d4SSatish Balay       aval += 8;
5957285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
5969371c9d4SSatish Balay       acolidx += 8;
5979371c9d4SSatish Balay       aval += 8;
5987285fed1SHong Zhang       j += 3;
5997285fed1SHong Zhang       break;
6007285fed1SHong Zhang     case 2:
6017285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6029371c9d4SSatish Balay       acolidx += 8;
6039371c9d4SSatish Balay       aval += 8;
6047285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6059371c9d4SSatish Balay       acolidx += 8;
6069371c9d4SSatish Balay       aval += 8;
6077285fed1SHong Zhang       j += 2;
6087285fed1SHong Zhang       break;
6097285fed1SHong Zhang     case 1:
6107285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6119371c9d4SSatish Balay       acolidx += 8;
6129371c9d4SSatish Balay       aval += 8;
6137285fed1SHong Zhang       j += 1;
6147285fed1SHong Zhang       break;
6157285fed1SHong Zhang     }
6167285fed1SHong Zhang   #pragma novector
6177285fed1SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
6187285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6199371c9d4SSatish Balay       acolidx += 8;
6209371c9d4SSatish Balay       aval += 8;
6217285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6229371c9d4SSatish Balay       acolidx += 8;
6239371c9d4SSatish Balay       aval += 8;
6247285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
6259371c9d4SSatish Balay       acolidx += 8;
6269371c9d4SSatish Balay       aval += 8;
6277285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
6289371c9d4SSatish Balay       acolidx += 8;
6299371c9d4SSatish Balay       aval += 8;
6307285fed1SHong Zhang     }
6317285fed1SHong Zhang 
6327285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
6337285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
6347285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
6357285fed1SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
636ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y);
637d4002b98SHong Zhang     } else {
638ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&z[8 * i], vec_y);
639d4002b98SHong Zhang     }
6407285fed1SHong Zhang   }
64121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
64207e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
6437285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
6447285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6457285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6467285fed1SHong Zhang 
6477285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
6487285fed1SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
6497285fed1SHong Zhang       for (r = 0; r < (A->rmap->n & 0x07); ++r) {
6507285fed1SHong Zhang         row        = 8 * i + r;
6517285fed1SHong Zhang         yval       = (MatScalar)0.0;
6527285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6537285fed1SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
6547285fed1SHong Zhang         z[row] = y[row] + yval;
6557285fed1SHong Zhang       }
6567285fed1SHong Zhang       break;
6577285fed1SHong Zhang     }
6587285fed1SHong Zhang 
6597285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y + 8 * i);
6607285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y + 8 * i + 4);
6617285fed1SHong Zhang 
6627285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6637285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
6647285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
665165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
6667285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6677285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
668165f9cc3SJed Brown       vec_x     = _mm256_setzero_pd();
6697285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6707285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6717285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6727285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6737285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
6747285fed1SHong Zhang       aval += 4;
6757285fed1SHong Zhang 
6767285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6777285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6787285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6797285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6807285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6817285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6827285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6837285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
6847285fed1SHong Zhang       aval += 4;
6857285fed1SHong Zhang     }
6867285fed1SHong Zhang 
6877285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8, vec_y);
6887285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8 + 4, vec_y2);
6897285fed1SHong Zhang   }
690d4002b98SHong Zhang #else
69107e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
6927285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
69307e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
6942d1451d4SHong Zhang       sum[j] = 0.0;
69507e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
696d4002b98SHong Zhang     }
69707e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
69807e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
699d4002b98SHong Zhang     } else {
70007e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
7017285fed1SHong Zhang     }
702d4002b98SHong Zhang   }
70307e43b41SHong Zhang   PetscCall(PetscFree(sum));
704d4002b98SHong Zhang #endif
705d4002b98SHong Zhang 
7069566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz));
7079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
7089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayPair(yy, zz, &y, &z));
7093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
710d4002b98SHong Zhang }
711d4002b98SHong Zhang 
712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy)
713d71ae5a4SJacob Faibussowitsch {
714d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
715d4002b98SHong Zhang   PetscScalar       *y;
716d4002b98SHong Zhang   const PetscScalar *x;
717d4002b98SHong Zhang   const MatScalar   *aval    = a->val;
718d4002b98SHong Zhang   const PetscInt    *acolidx = a->colidx;
71907e43b41SHong Zhang   PetscInt           i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight;
720d4002b98SHong Zhang 
721d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
722d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
723d4002b98SHong Zhang #endif
724d4002b98SHong Zhang 
725d4002b98SHong Zhang   PetscFunctionBegin;
726b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7279566063dSJacob Faibussowitsch     PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy));
7283ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
7299fc32365SStefano Zampini   }
7309566063dSJacob Faibussowitsch   if (zz != yy) PetscCall(VecCopy(zz, yy));
7312d1451d4SHong Zhang 
7322d1451d4SHong Zhang   if (a->nz) {
7339566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(xx, &x));
7349566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy, &y));
735d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
73607e43b41SHong Zhang       if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
73707e43b41SHong Zhang         for (r = 0; r < (A->rmap->n % sliceheight); ++r) {
73807e43b41SHong Zhang           row        = sliceheight * i + r;
7397285fed1SHong Zhang           nnz_in_row = a->rlen[row];
74007e43b41SHong Zhang           for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row];
7417285fed1SHong Zhang         }
7427285fed1SHong Zhang         break;
7437285fed1SHong Zhang       }
74407e43b41SHong Zhang       for (r = 0; r < sliceheight; ++r)
74507e43b41SHong Zhang         for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r];
746d4002b98SHong Zhang     }
7472d1451d4SHong Zhang     PetscCall(PetscLogFlops(2.0 * a->nz));
7489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(xx, &x));
7499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy, &y));
7502d1451d4SHong Zhang   }
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
752d4002b98SHong Zhang }
753d4002b98SHong Zhang 
754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy)
755d71ae5a4SJacob Faibussowitsch {
756d4002b98SHong Zhang   PetscFunctionBegin;
757b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7589566063dSJacob Faibussowitsch     PetscCall(MatMult_SeqSELL(A, xx, yy));
7599fc32365SStefano Zampini   } else {
7609566063dSJacob Faibussowitsch     PetscCall(VecSet(yy, 0.0));
7619566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy));
7629fc32365SStefano Zampini   }
7633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
764d4002b98SHong Zhang }
765d4002b98SHong Zhang 
766d4002b98SHong Zhang /*
767d4002b98SHong Zhang      Checks for missing diagonals
768d4002b98SHong Zhang */
769d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A, PetscBool *missing, PetscInt *d)
770d71ae5a4SJacob Faibussowitsch {
771d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
772d4002b98SHong Zhang   PetscInt    *diag, i;
773d4002b98SHong Zhang 
774d4002b98SHong Zhang   PetscFunctionBegin;
775d4002b98SHong Zhang   *missing = PETSC_FALSE;
776d4002b98SHong Zhang   if (A->rmap->n > 0 && !(a->colidx)) {
777d4002b98SHong Zhang     *missing = PETSC_TRUE;
778d4002b98SHong Zhang     if (d) *d = 0;
7799566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A, "Matrix has no entries therefore is missing diagonal\n"));
780d4002b98SHong Zhang   } else {
781d4002b98SHong Zhang     diag = a->diag;
782d4002b98SHong Zhang     for (i = 0; i < A->rmap->n; i++) {
783d4002b98SHong Zhang       if (diag[i] == -1) {
784d4002b98SHong Zhang         *missing = PETSC_TRUE;
785d4002b98SHong Zhang         if (d) *d = i;
7869566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Matrix is missing diagonal number %" PetscInt_FMT "\n", i));
787d4002b98SHong Zhang         break;
788d4002b98SHong Zhang       }
789d4002b98SHong Zhang     }
790d4002b98SHong Zhang   }
7913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
792d4002b98SHong Zhang }
793d4002b98SHong Zhang 
794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A)
795d71ae5a4SJacob Faibussowitsch {
796d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
797d4002b98SHong Zhang   PetscInt     i, j, m = A->rmap->n, shift;
798d4002b98SHong Zhang 
799d4002b98SHong Zhang   PetscFunctionBegin;
800d4002b98SHong Zhang   if (!a->diag) {
8019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &a->diag));
802d4002b98SHong Zhang     a->free_diag = PETSC_TRUE;
803d4002b98SHong Zhang   }
804d4002b98SHong Zhang   for (i = 0; i < m; i++) {                                          /* loop over rows */
80507e43b41SHong Zhang     shift      = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
806d4002b98SHong Zhang     a->diag[i] = -1;
807d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
80807e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
80907e43b41SHong Zhang         a->diag[i] = shift + a->sliceheight * j;
810d4002b98SHong Zhang         break;
811d4002b98SHong Zhang       }
812d4002b98SHong Zhang     }
813d4002b98SHong Zhang   }
8143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
815d4002b98SHong Zhang }
816d4002b98SHong Zhang 
817d4002b98SHong Zhang /*
818d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
819d4002b98SHong Zhang */
820d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift)
821d71ae5a4SJacob Faibussowitsch {
822d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
823d4002b98SHong Zhang   PetscInt     i, *diag, m = A->rmap->n;
824d4002b98SHong Zhang   MatScalar   *val = a->val;
825d4002b98SHong Zhang   PetscScalar *idiag, *mdiag;
826d4002b98SHong Zhang 
827d4002b98SHong Zhang   PetscFunctionBegin;
8283ba16761SJacob Faibussowitsch   if (a->idiagvalid) PetscFunctionReturn(PETSC_SUCCESS);
8299566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqSELL(A));
830d4002b98SHong Zhang   diag = a->diag;
831d4002b98SHong Zhang   if (!a->idiag) {
8329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work));
833d4002b98SHong Zhang     val = a->val;
834d4002b98SHong Zhang   }
835d4002b98SHong Zhang   mdiag = a->mdiag;
836d4002b98SHong Zhang   idiag = a->idiag;
837d4002b98SHong Zhang 
838d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
839d4002b98SHong Zhang     for (i = 0; i < m; i++) {
840d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
841d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
8420fdf79fbSJacob Faibussowitsch         PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i);
8439566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i));
844d4002b98SHong Zhang         A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
845d4002b98SHong Zhang         A->factorerror_zeropivot_value = 0.0;
846d4002b98SHong Zhang         A->factorerror_zeropivot_row   = i;
847d4002b98SHong Zhang       }
848d4002b98SHong Zhang       idiag[i] = 1.0 / val[diag[i]];
849d4002b98SHong Zhang     }
8509566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(m));
851d4002b98SHong Zhang   } else {
852d4002b98SHong Zhang     for (i = 0; i < m; i++) {
853d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
854d4002b98SHong Zhang       idiag[i] = omega / (fshift + val[diag[i]]);
855d4002b98SHong Zhang     }
8569566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0 * m));
857d4002b98SHong Zhang   }
858d4002b98SHong Zhang   a->idiagvalid = PETSC_TRUE;
8593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
860d4002b98SHong Zhang }
861d4002b98SHong Zhang 
862d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
863d71ae5a4SJacob Faibussowitsch {
864d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
865d4002b98SHong Zhang 
866d4002b98SHong Zhang   PetscFunctionBegin;
8679566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices]));
8689566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
8693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
870d4002b98SHong Zhang }
871d4002b98SHong Zhang 
872d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A)
873d71ae5a4SJacob Faibussowitsch {
874d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
875d4002b98SHong Zhang 
876d4002b98SHong Zhang   PetscFunctionBegin;
877d4002b98SHong Zhang #if defined(PETSC_USE_LOG)
8783ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz));
879d4002b98SHong Zhang #endif
8809566063dSJacob Faibussowitsch   PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx));
8819566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
8829566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
8839566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->diag));
8849566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->rlen));
8859566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sliidx));
8869566063dSJacob Faibussowitsch   PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work));
8879566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->solve_work));
8889566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
8899566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->saved_values));
8909566063dSJacob Faibussowitsch   PetscCall(PetscFree2(a->getrowcols, a->getrowvals));
8919566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->data));
892*90d2215bSHong Zhang #if defined(PETSC_HAVE_CUDA)
893*90d2215bSHong Zhang   PetscCall(PetscFree(a->chunk_slice_map));
894*90d2215bSHong Zhang #endif
895d4002b98SHong Zhang 
8969566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
8979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
8989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
8999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL));
9002e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL));
9012e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL));
9022d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_SeqSELL_SeqAIJ_C", NULL));
9032d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
9042d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_SeqSELL_SeqSELLCUDA_C", NULL));
9052d1451d4SHong Zhang #endif
90607e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL));
90707e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL));
90807e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL));
90907e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL));
9103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
911d4002b98SHong Zhang }
912d4002b98SHong Zhang 
913d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg)
914d71ae5a4SJacob Faibussowitsch {
915d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
916d4002b98SHong Zhang 
917d4002b98SHong Zhang   PetscFunctionBegin;
918d4002b98SHong Zhang   switch (op) {
919d71ae5a4SJacob Faibussowitsch   case MAT_ROW_ORIENTED:
920d71ae5a4SJacob Faibussowitsch     a->roworiented = flg;
921d71ae5a4SJacob Faibussowitsch     break;
922d71ae5a4SJacob Faibussowitsch   case MAT_KEEP_NONZERO_PATTERN:
923d71ae5a4SJacob Faibussowitsch     a->keepnonzeropattern = flg;
924d71ae5a4SJacob Faibussowitsch     break;
925d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATIONS:
926d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? 0 : 1);
927d71ae5a4SJacob Faibussowitsch     break;
928d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATION_ERR:
929d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -1 : 0);
930d71ae5a4SJacob Faibussowitsch     break;
931d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_ALLOCATION_ERR:
932d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -2 : 0);
933d71ae5a4SJacob Faibussowitsch     break;
934d71ae5a4SJacob Faibussowitsch   case MAT_UNUSED_NONZERO_LOCATION_ERR:
935d71ae5a4SJacob Faibussowitsch     a->nounused = (flg ? -1 : 0);
936d71ae5a4SJacob Faibussowitsch     break;
9378c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
938d4002b98SHong Zhang   case MAT_IGNORE_OFF_PROC_ENTRIES:
939d4002b98SHong Zhang   case MAT_USE_HASH_TABLE:
940d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
941d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
942d71ae5a4SJacob Faibussowitsch     break;
943d4002b98SHong Zhang   case MAT_SPD:
944d4002b98SHong Zhang   case MAT_SYMMETRIC:
945d4002b98SHong Zhang   case MAT_STRUCTURALLY_SYMMETRIC:
946d4002b98SHong Zhang   case MAT_HERMITIAN:
947d4002b98SHong Zhang   case MAT_SYMMETRY_ETERNAL:
948b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
949b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
950d4002b98SHong Zhang     /* These options are handled directly by MatSetOption() */
951d4002b98SHong Zhang     break;
952d71ae5a4SJacob Faibussowitsch   default:
953d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
954d4002b98SHong Zhang   }
9553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
956d4002b98SHong Zhang }
957d4002b98SHong Zhang 
958d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v)
959d71ae5a4SJacob Faibussowitsch {
960d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
961d4002b98SHong Zhang   PetscInt     i, j, n, shift;
962d4002b98SHong Zhang   PetscScalar *x, zero = 0.0;
963d4002b98SHong Zhang 
964d4002b98SHong Zhang   PetscFunctionBegin;
9659566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &n));
96608401ef6SPierre Jolivet   PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
967d4002b98SHong Zhang 
968d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
969d4002b98SHong Zhang     PetscInt *diag = a->diag;
9709566063dSJacob Faibussowitsch     PetscCall(VecGetArray(v, &x));
971d4002b98SHong Zhang     for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]];
9729566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(v, &x));
9733ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
974d4002b98SHong Zhang   }
975d4002b98SHong Zhang 
9769566063dSJacob Faibussowitsch   PetscCall(VecSet(v, zero));
9779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
978d4002b98SHong Zhang   for (i = 0; i < n; i++) {                                     /* loop over rows */
97907e43b41SHong Zhang     shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
980d4002b98SHong Zhang     x[i]  = 0;
981d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
98207e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
98307e43b41SHong Zhang         x[i] = a->val[shift + a->sliceheight * j];
984d4002b98SHong Zhang         break;
985d4002b98SHong Zhang       }
986d4002b98SHong Zhang     }
987d4002b98SHong Zhang   }
9889566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
9893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
990d4002b98SHong Zhang }
991d4002b98SHong Zhang 
992d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr)
993d71ae5a4SJacob Faibussowitsch {
994d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
995d4002b98SHong Zhang   const PetscScalar *l, *r;
996d4002b98SHong Zhang   PetscInt           i, j, m, n, row;
997d4002b98SHong Zhang 
998d4002b98SHong Zhang   PetscFunctionBegin;
999d4002b98SHong Zhang   if (ll) {
1000d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
1001d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
10029566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &m));
100308401ef6SPierre Jolivet     PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length");
10049566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(ll, &l));
1005d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
100607e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
100707e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
100807e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row];
1009dab86139SHong Zhang         }
1010dab86139SHong Zhang       } else {
101107e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) { a->val[j] *= l[a->sliceheight * i + row]; }
1012d4002b98SHong Zhang       }
1013dab86139SHong Zhang     }
10149566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(ll, &l));
10159566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1016d4002b98SHong Zhang   }
1017d4002b98SHong Zhang   if (rr) {
10189566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &n));
101908401ef6SPierre Jolivet     PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length");
10209566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(rr, &r));
1021d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
102207e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
102307e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) {
102407e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]];
1025dab86139SHong Zhang         }
1026dab86139SHong Zhang       } else {
1027ad540459SPierre Jolivet         for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]];
1028d4002b98SHong Zhang       }
1029dab86139SHong Zhang     }
10309566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(rr, &r));
10319566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1032d4002b98SHong Zhang   }
10339566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
10342d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
10352d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
10362d1451d4SHong Zhang #endif
10373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1038d4002b98SHong Zhang }
1039d4002b98SHong Zhang 
1040d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
1041d71ae5a4SJacob Faibussowitsch {
1042d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1043d4002b98SHong Zhang   PetscInt    *cp, i, k, low, high, t, row, col, l;
1044d4002b98SHong Zhang   PetscInt     shift;
1045d4002b98SHong Zhang   MatScalar   *vp;
1046d4002b98SHong Zhang 
1047d4002b98SHong Zhang   PetscFunctionBegin;
104868aafef3SStefano Zampini   for (k = 0; k < m; k++) { /* loop over requested rows */
1049d4002b98SHong Zhang     row = im[k];
1050d4002b98SHong Zhang     if (row < 0) continue;
10516bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
105207e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */
1053d4002b98SHong Zhang     cp    = a->colidx + shift;                                        /* pointer to the row */
1054d4002b98SHong Zhang     vp    = a->val + shift;                                           /* pointer to the row */
105568aafef3SStefano Zampini     for (l = 0; l < n; l++) {                                         /* loop over requested columns */
1056d4002b98SHong Zhang       col = in[l];
1057d4002b98SHong Zhang       if (col < 0) continue;
10586bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
10599371c9d4SSatish Balay       high = a->rlen[row];
10609371c9d4SSatish Balay       low  = 0; /* assume unsorted */
1061d4002b98SHong Zhang       while (high - low > 5) {
1062d4002b98SHong Zhang         t = (low + high) / 2;
106307e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1064d4002b98SHong Zhang         else low = t;
1065d4002b98SHong Zhang       }
1066d4002b98SHong Zhang       for (i = low; i < high; i++) {
106707e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
106807e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
106907e43b41SHong Zhang           *v++ = *(vp + a->sliceheight * i);
1070d4002b98SHong Zhang           goto finished;
1071d4002b98SHong Zhang         }
1072d4002b98SHong Zhang       }
1073d4002b98SHong Zhang       *v++ = 0.0;
1074d4002b98SHong Zhang     finished:;
1075d4002b98SHong Zhang     }
1076d4002b98SHong Zhang   }
10773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1078d4002b98SHong Zhang }
1079d4002b98SHong Zhang 
1080d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer)
1081d71ae5a4SJacob Faibussowitsch {
1082d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1083d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1084d4002b98SHong Zhang   const char       *name;
1085d4002b98SHong Zhang   PetscViewerFormat format;
1086d4002b98SHong Zhang 
1087d4002b98SHong Zhang   PetscFunctionBegin;
10889566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
1089d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1090d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1091d4002b98SHong Zhang     /*
1092d4002b98SHong Zhang     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) {
1093d4002b98SHong Zhang       nofinalvalue = 1;
1094d4002b98SHong Zhang     }
1095d4002b98SHong Zhang     */
10969566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
10979566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n));
10989566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz));
1099d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11009566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue));
1101d4002b98SHong Zhang #else
11029566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue));
1103d4002b98SHong Zhang #endif
11049566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n"));
1105d4002b98SHong Zhang 
1106d4002b98SHong Zhang     for (i = 0; i < m; i++) {
110707e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1108d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1109d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
111007e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1111d4002b98SHong Zhang #else
111207e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j]));
1113d4002b98SHong Zhang #endif
1114d4002b98SHong Zhang       }
1115d4002b98SHong Zhang     }
1116d4002b98SHong Zhang     /*
1117d4002b98SHong Zhang     if (nofinalvalue) {
1118d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11199566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n",m,A->cmap->n,0.,0.));
1120d4002b98SHong Zhang #else
11219566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n",m,A->cmap->n,0.0));
1122d4002b98SHong Zhang #endif
1123d4002b98SHong Zhang     }
1124d4002b98SHong Zhang     */
11259566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)A, &name));
11269566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name));
11279566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1128d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
11293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1130d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
11319566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1132d4002b98SHong Zhang     for (i = 0; i < m; i++) {
11339566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
113407e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1135d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1136d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
113707e43b41SHong Zhang         if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
113807e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
113907e43b41SHong Zhang         } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
114007e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
114107e43b41SHong Zhang         } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
114207e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1143d4002b98SHong Zhang         }
1144d4002b98SHong Zhang #else
114507e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1146d4002b98SHong Zhang #endif
1147d4002b98SHong Zhang       }
11489566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1149d4002b98SHong Zhang     }
11509566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1151d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1152d4002b98SHong Zhang     PetscInt    cnt = 0, jcnt;
1153d4002b98SHong Zhang     PetscScalar value;
1154d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1155d4002b98SHong Zhang     PetscBool realonly = PETSC_TRUE;
1156d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1157d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1158d4002b98SHong Zhang         realonly = PETSC_FALSE;
1159d4002b98SHong Zhang         break;
1160d4002b98SHong Zhang       }
1161d4002b98SHong Zhang     }
1162d4002b98SHong Zhang #endif
1163d4002b98SHong Zhang 
11649566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1165d4002b98SHong Zhang     for (i = 0; i < m; i++) {
1166d4002b98SHong Zhang       jcnt  = 0;
116707e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1168d4002b98SHong Zhang       for (j = 0; j < A->cmap->n; j++) {
116907e43b41SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) {
1170d4002b98SHong Zhang           value = a->val[cnt++];
1171d4002b98SHong Zhang           jcnt++;
1172d4002b98SHong Zhang         } else {
1173d4002b98SHong Zhang           value = 0.0;
1174d4002b98SHong Zhang         }
1175d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1176d4002b98SHong Zhang         if (realonly) {
11779566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value)));
1178d4002b98SHong Zhang         } else {
11799566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value)));
1180d4002b98SHong Zhang         }
1181d4002b98SHong Zhang #else
11829566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value));
1183d4002b98SHong Zhang #endif
1184d4002b98SHong Zhang       }
11859566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1186d4002b98SHong Zhang     }
11879566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1188d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1189d4002b98SHong Zhang     PetscInt fshift = 1;
11909566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1191d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11929566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n"));
1193d4002b98SHong Zhang #else
11949566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n"));
1195d4002b98SHong Zhang #endif
11969566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz));
1197d4002b98SHong Zhang     for (i = 0; i < m; i++) {
119807e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1199d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1200d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
120107e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1202d4002b98SHong Zhang #else
120307e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j]));
1204d4002b98SHong Zhang #endif
1205d4002b98SHong Zhang       }
1206d4002b98SHong Zhang     }
12079566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
120868aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
120968aafef3SStefano Zampini     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
121068aafef3SStefano Zampini       PetscInt row;
12119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1]));
121207e43b41SHong Zhang       for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
121368aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
121468aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
121507e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
121668aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
121707e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j])));
121868aafef3SStefano Zampini         } else {
121907e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j])));
122068aafef3SStefano Zampini         }
122168aafef3SStefano Zampini #else
122207e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j]));
122368aafef3SStefano Zampini #endif
122468aafef3SStefano Zampini       }
122568aafef3SStefano Zampini     }
1226d4002b98SHong Zhang   } else {
12279566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1228d4002b98SHong Zhang     if (A->factortype) {
1229d4002b98SHong Zhang       for (i = 0; i < m; i++) {
123007e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12319566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1232d4002b98SHong Zhang         /* L part */
123307e43b41SHong Zhang         for (j = shift; j < a->diag[i]; j += a->sliceheight) {
1234d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
123507e43b41SHong Zhang           if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) {
12369566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
123707e43b41SHong Zhang           } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) {
12389566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1239d4002b98SHong Zhang           } else {
12409566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1241d4002b98SHong Zhang           }
1242d4002b98SHong Zhang #else
12439566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1244d4002b98SHong Zhang #endif
1245d4002b98SHong Zhang         }
1246d4002b98SHong Zhang         /* diagonal */
1247d4002b98SHong Zhang         j = a->diag[i];
1248d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1249d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
12509566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j])));
1251d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12529566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j]))));
1253d4002b98SHong Zhang         } else {
12549566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j])));
1255d4002b98SHong Zhang         }
1256d4002b98SHong Zhang #else
12579566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1.0 / a->val[j])));
1258d4002b98SHong Zhang #endif
1259d4002b98SHong Zhang 
1260d4002b98SHong Zhang         /* U part */
126107e43b41SHong Zhang         for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) {
1262d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1263d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
12649566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
1265d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12669566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1267d4002b98SHong Zhang           } else {
12689566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1269d4002b98SHong Zhang           }
1270d4002b98SHong Zhang #else
12719566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1272d4002b98SHong Zhang #endif
1273d4002b98SHong Zhang         }
12749566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1275d4002b98SHong Zhang       }
1276d4002b98SHong Zhang     } else {
1277d4002b98SHong Zhang       for (i = 0; i < m; i++) {
127807e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12799566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1280d4002b98SHong Zhang         for (j = 0; j < a->rlen[i]; j++) {
1281d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1282d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
128307e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1284d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
128507e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1286d4002b98SHong Zhang           } else {
128707e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1288d4002b98SHong Zhang           }
1289d4002b98SHong Zhang #else
129007e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1291d4002b98SHong Zhang #endif
1292d4002b98SHong Zhang         }
12939566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1294d4002b98SHong Zhang       }
1295d4002b98SHong Zhang     }
12969566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1297d4002b98SHong Zhang   }
12989566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
12993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1300d4002b98SHong Zhang }
1301d4002b98SHong Zhang 
1302d4002b98SHong Zhang #include <petscdraw.h>
1303d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa)
1304d71ae5a4SJacob Faibussowitsch {
1305d4002b98SHong Zhang   Mat               A = (Mat)Aa;
1306d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1307d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1308d4002b98SHong Zhang   int               color;
1309d4002b98SHong Zhang   PetscReal         xl, yl, xr, yr, x_l, x_r, y_l, y_r;
1310d4002b98SHong Zhang   PetscViewer       viewer;
1311d4002b98SHong Zhang   PetscViewerFormat format;
1312d4002b98SHong Zhang 
1313d4002b98SHong Zhang   PetscFunctionBegin;
13149566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
13159566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
13169566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
1317d4002b98SHong Zhang 
1318d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1319d4002b98SHong Zhang 
1320d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1321d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1322d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1323d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1324d4002b98SHong Zhang     for (i = 0; i < m; i++) {
132507e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
13269371c9d4SSatish Balay       y_l   = m - i - 1.0;
13279371c9d4SSatish Balay       y_r   = y_l + 1.0;
1328d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
132907e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13309371c9d4SSatish Balay         x_r = x_l + 1.0;
133107e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue;
13329566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1333d4002b98SHong Zhang       }
1334d4002b98SHong Zhang     }
1335d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1336d4002b98SHong Zhang     for (i = 0; i < m; i++) {
133707e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13389371c9d4SSatish Balay       y_l   = m - i - 1.0;
13399371c9d4SSatish Balay       y_r   = y_l + 1.0;
1340d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
134107e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13429371c9d4SSatish Balay         x_r = x_l + 1.0;
134307e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.) continue;
13449566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1345d4002b98SHong Zhang       }
1346d4002b98SHong Zhang     }
1347d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1348d4002b98SHong Zhang     for (i = 0; i < m; i++) {
134907e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13509371c9d4SSatish Balay       y_l   = m - i - 1.0;
13519371c9d4SSatish Balay       y_r   = y_l + 1.0;
1352d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
135307e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13549371c9d4SSatish Balay         x_r = x_l + 1.0;
135507e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue;
13569566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1357d4002b98SHong Zhang       }
1358d4002b98SHong Zhang     }
1359d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1360d4002b98SHong Zhang   } else {
1361d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1362d4002b98SHong Zhang     /* first determine max of all nonzero values */
1363d4002b98SHong Zhang     PetscReal minv = 0.0, maxv = 0.0;
1364d4002b98SHong Zhang     PetscInt  count = 0;
1365d4002b98SHong Zhang     PetscDraw popup;
1366d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1367d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1368d4002b98SHong Zhang     }
1369d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
13709566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
13719566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, minv, maxv));
1372d4002b98SHong Zhang 
1373d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1374d4002b98SHong Zhang     for (i = 0; i < m; i++) {
137507e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1376d4002b98SHong Zhang       y_l   = m - i - 1.0;
1377d4002b98SHong Zhang       y_r   = y_l + 1.0;
1378d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
137907e43b41SHong Zhang         x_l   = a->colidx[shift + a->sliceheight * j];
1380d4002b98SHong Zhang         x_r   = x_l + 1.0;
1381d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv);
13829566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1383d4002b98SHong Zhang         count++;
1384d4002b98SHong Zhang       }
1385d4002b98SHong Zhang     }
1386d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1387d4002b98SHong Zhang   }
13883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1389d4002b98SHong Zhang }
1390d4002b98SHong Zhang 
1391d4002b98SHong Zhang #include <petscdraw.h>
1392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer)
1393d71ae5a4SJacob Faibussowitsch {
1394d4002b98SHong Zhang   PetscDraw draw;
1395d4002b98SHong Zhang   PetscReal xr, yr, xl, yl, h, w;
1396d4002b98SHong Zhang   PetscBool isnull;
1397d4002b98SHong Zhang 
1398d4002b98SHong Zhang   PetscFunctionBegin;
13999566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
14009566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
14013ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1402d4002b98SHong Zhang 
14039371c9d4SSatish Balay   xr = A->cmap->n;
14049371c9d4SSatish Balay   yr = A->rmap->n;
14059371c9d4SSatish Balay   h  = yr / 10.0;
14069371c9d4SSatish Balay   w  = xr / 10.0;
14079371c9d4SSatish Balay   xr += w;
14089371c9d4SSatish Balay   yr += h;
14099371c9d4SSatish Balay   xl = -w;
14109371c9d4SSatish Balay   yl = -h;
14119566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
14129566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
14139566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A));
14149566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
14159566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
14163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1417d4002b98SHong Zhang }
1418d4002b98SHong Zhang 
1419d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer)
1420d71ae5a4SJacob Faibussowitsch {
1421d4002b98SHong Zhang   PetscBool iascii, isbinary, isdraw;
1422d4002b98SHong Zhang 
1423d4002b98SHong Zhang   PetscFunctionBegin;
14249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
14259566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
14269566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
1427d4002b98SHong Zhang   if (iascii) {
14289566063dSJacob Faibussowitsch     PetscCall(MatView_SeqSELL_ASCII(A, viewer));
1429d4002b98SHong Zhang   } else if (isbinary) {
14309566063dSJacob Faibussowitsch     /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */
14311baa6e33SBarry Smith   } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer));
14323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1433d4002b98SHong Zhang }
1434d4002b98SHong Zhang 
1435d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode)
1436d71ae5a4SJacob Faibussowitsch {
1437d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1438d4002b98SHong Zhang   PetscInt     i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k;
1439d4002b98SHong Zhang   MatScalar   *vp;
1440*90d2215bSHong Zhang #if defined(PETSC_HAVE_CUDA)
1441*90d2215bSHong Zhang   PetscInt totalchunks = 0;
1442*90d2215bSHong Zhang #endif
1443d4002b98SHong Zhang 
1444d4002b98SHong Zhang   PetscFunctionBegin;
14453ba16761SJacob Faibussowitsch   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS);
1446d4002b98SHong Zhang   /* To do: compress out the unused elements */
14479566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqSELL(A));
14489566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz));
14499566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs));
14509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax));
14512d1451d4SHong Zhang   a->nonzerorowcnt = 0;
1452d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1453d4002b98SHong Zhang   for (i = 0; i < a->totalslices; ++i) {
1454d4002b98SHong Zhang     shift = a->sliidx[i];                                                   /* starting index of the slice */
1455d4002b98SHong Zhang     cp    = a->colidx + shift;                                              /* pointer to the column indices of the slice */
1456d4002b98SHong Zhang     vp    = a->val + shift;                                                 /* pointer to the nonzero values of the slice */
145707e43b41SHong Zhang     for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */
145807e43b41SHong Zhang       row  = a->sliceheight * i + row_in_slice;
1459d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1460d4002b98SHong Zhang       /*
1461d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1462d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1463d4002b98SHong Zhang       */
1464d4002b98SHong Zhang       lastcol = 0;
1465d4002b98SHong Zhang       if (nrow > 0) { /* nonempty row */
14662d1451d4SHong Zhang         a->nonzerorowcnt++;
146707e43b41SHong Zhang         lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */
1468aaa8cc7dSPierre Jolivet       } else if (!row_in_slice) {                                 /* first row of the correct slice is empty */
146907e43b41SHong Zhang         for (j = 1; j < a->sliceheight; j++) {
147007e43b41SHong Zhang           if (a->rlen[a->sliceheight * i + j]) {
1471d4002b98SHong Zhang             lastcol = cp[j];
1472d4002b98SHong Zhang             break;
1473d4002b98SHong Zhang           }
1474d4002b98SHong Zhang         }
1475d4002b98SHong Zhang       } else {
1476d4002b98SHong Zhang         if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */
1477d4002b98SHong Zhang       }
1478d4002b98SHong Zhang 
147907e43b41SHong Zhang       for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) {
148007e43b41SHong Zhang         cp[a->sliceheight * k + row_in_slice] = lastcol;
148107e43b41SHong Zhang         vp[a->sliceheight * k + row_in_slice] = (MatScalar)0;
1482d4002b98SHong Zhang       }
1483d4002b98SHong Zhang     }
1484d4002b98SHong Zhang   }
1485d4002b98SHong Zhang 
1486d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1487d4002b98SHong Zhang   a->reallocs = 0;
1488d4002b98SHong Zhang 
14899566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
1490*90d2215bSHong Zhang #if defined(PETSC_HAVE_CUDA)
1491*90d2215bSHong Zhang   if (!a->chunksize && a->totalslices) {
1492*90d2215bSHong Zhang     a->chunksize = 64;
1493*90d2215bSHong Zhang     while (a->chunksize < 1024 && 2 * a->chunksize <= a->sliidx[a->totalslices] / a->totalslices) a->chunksize *= 2;
1494*90d2215bSHong Zhang     totalchunks = 1 + (a->sliidx[a->totalslices] - 1) / a->chunksize;
1495*90d2215bSHong Zhang   }
1496*90d2215bSHong Zhang   if (totalchunks != a->totalchunks) {
1497*90d2215bSHong Zhang     PetscCall(PetscFree(a->chunk_slice_map));
1498*90d2215bSHong Zhang     PetscCall(PetscMalloc1(totalchunks, &a->chunk_slice_map));
1499*90d2215bSHong Zhang     a->totalchunks = totalchunks;
1500*90d2215bSHong Zhang   }
1501*90d2215bSHong Zhang   j = 0;
1502*90d2215bSHong Zhang   for (i = 0; i < totalchunks; i++) {
1503*90d2215bSHong Zhang     while (a->sliidx[j + 1] <= i * a->chunksize && j < a->totalslices) j++;
1504*90d2215bSHong Zhang     a->chunk_slice_map[i] = j;
1505*90d2215bSHong Zhang   }
1506*90d2215bSHong Zhang #endif
15073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1508d4002b98SHong Zhang }
1509d4002b98SHong Zhang 
1510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info)
1511d71ae5a4SJacob Faibussowitsch {
1512d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1513d4002b98SHong Zhang 
1514d4002b98SHong Zhang   PetscFunctionBegin;
1515d4002b98SHong Zhang   info->block_size   = 1.0;
15163966268fSBarry Smith   info->nz_allocated = a->maxallocmat;
15173966268fSBarry Smith   info->nz_used      = a->sliidx[a->totalslices]; /* include padding zeros */
15183966268fSBarry Smith   info->nz_unneeded  = (a->maxallocmat - a->sliidx[a->totalslices]);
15193966268fSBarry Smith   info->assemblies   = A->num_ass;
15203966268fSBarry Smith   info->mallocs      = A->info.mallocs;
15214dfa11a4SJacob Faibussowitsch   info->memory       = 0; /* REVIEW ME */
1522d4002b98SHong Zhang   if (A->factortype) {
1523d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1524d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1525d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1526d4002b98SHong Zhang   } else {
1527d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1528d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1529d4002b98SHong Zhang     info->factor_mallocs    = 0;
1530d4002b98SHong Zhang   }
15313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1532d4002b98SHong Zhang }
1533d4002b98SHong Zhang 
1534d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
1535d71ae5a4SJacob Faibussowitsch {
1536d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1537d4002b98SHong Zhang   PetscInt     shift, i, k, l, low, high, t, ii, row, col, nrow;
1538d4002b98SHong Zhang   PetscInt    *cp, nonew = a->nonew, lastcol = -1;
1539d4002b98SHong Zhang   MatScalar   *vp, value;
15402d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
15412d1451d4SHong Zhang   PetscBool inserted = PETSC_FALSE;
15424e58db63SHong Zhang   PetscInt  mul      = DEVICE_MEM_ALIGN / a->sliceheight;
15432d1451d4SHong Zhang #endif
1544d4002b98SHong Zhang 
1545d4002b98SHong Zhang   PetscFunctionBegin;
1546d4002b98SHong Zhang   for (k = 0; k < m; k++) { /* loop over added rows */
1547d4002b98SHong Zhang     row = im[k];
1548d4002b98SHong Zhang     if (row < 0) continue;
15496bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
155007e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */
1551d4002b98SHong Zhang     cp    = a->colidx + shift;                                      /* pointer to the row */
1552d4002b98SHong Zhang     vp    = a->val + shift;                                         /* pointer to the row */
1553d4002b98SHong Zhang     nrow  = a->rlen[row];
1554d4002b98SHong Zhang     low   = 0;
1555d4002b98SHong Zhang     high  = nrow;
1556d4002b98SHong Zhang 
1557d4002b98SHong Zhang     for (l = 0; l < n; l++) { /* loop over added columns */
1558d4002b98SHong Zhang       col = in[l];
1559d4002b98SHong Zhang       if (col < 0) continue;
15606bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
1561d4002b98SHong Zhang       if (a->roworiented) {
1562d4002b98SHong Zhang         value = v[l + k * n];
1563d4002b98SHong Zhang       } else {
1564d4002b98SHong Zhang         value = v[k + l * m];
1565d4002b98SHong Zhang       }
1566d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1567d4002b98SHong Zhang 
1568ed73aabaSBarry Smith       /* search in this row for the specified column, i indicates the column to be set */
1569d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1570d4002b98SHong Zhang       else high = nrow;
1571d4002b98SHong Zhang       lastcol = col;
1572d4002b98SHong Zhang       while (high - low > 5) {
1573d4002b98SHong Zhang         t = (low + high) / 2;
157407e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1575d4002b98SHong Zhang         else low = t;
1576d4002b98SHong Zhang       }
1577d4002b98SHong Zhang       for (i = low; i < high; i++) {
157807e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
157907e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
158007e43b41SHong Zhang           if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value;
158107e43b41SHong Zhang           else *(vp + a->sliceheight * i) = value;
15822d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
15832d1451d4SHong Zhang           inserted = PETSC_TRUE;
15842d1451d4SHong Zhang #endif
1585d4002b98SHong Zhang           low = i + 1;
1586d4002b98SHong Zhang           goto noinsert;
1587d4002b98SHong Zhang         }
1588d4002b98SHong Zhang       }
1589d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1590d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
159108401ef6SPierre Jolivet       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
15924e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
15934e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, mul);
15944e58db63SHong Zhang #else
1595d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
15964e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, 1);
15974e58db63SHong Zhang #endif
1598d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1599d4002b98SHong Zhang       for (ii = nrow - 1; ii >= i; ii--) {
160007e43b41SHong Zhang         *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii);
160107e43b41SHong Zhang         *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii);
1602d4002b98SHong Zhang       }
1603d4002b98SHong Zhang       a->rlen[row]++;
160407e43b41SHong Zhang       *(cp + a->sliceheight * i) = col;
160507e43b41SHong Zhang       *(vp + a->sliceheight * i) = value;
1606d4002b98SHong Zhang       a->nz++;
1607d4002b98SHong Zhang       A->nonzerostate++;
16082d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16092d1451d4SHong Zhang       inserted = PETSC_TRUE;
16102d1451d4SHong Zhang #endif
16119371c9d4SSatish Balay       low = i + 1;
16129371c9d4SSatish Balay       high++;
16139371c9d4SSatish Balay       nrow++;
1614d4002b98SHong Zhang     noinsert:;
1615d4002b98SHong Zhang     }
1616d4002b98SHong Zhang     a->rlen[row] = nrow;
1617d4002b98SHong Zhang   }
16182d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16192d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU;
16202d1451d4SHong Zhang #endif
16213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1622d4002b98SHong Zhang }
1623d4002b98SHong Zhang 
1624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str)
1625d71ae5a4SJacob Faibussowitsch {
1626d4002b98SHong Zhang   PetscFunctionBegin;
1627d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1628d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1629d4002b98SHong Zhang     Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1630d4002b98SHong Zhang     Mat_SeqSELL *b = (Mat_SeqSELL *)B->data;
1631d4002b98SHong Zhang 
163208401ef6SPierre Jolivet     PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
16339566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices]));
1634d4002b98SHong Zhang   } else {
16359566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
1636d4002b98SHong Zhang   }
16373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1638d4002b98SHong Zhang }
1639d4002b98SHong Zhang 
1640d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A)
1641d71ae5a4SJacob Faibussowitsch {
1642d4002b98SHong Zhang   PetscFunctionBegin;
16439566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL));
16443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1645d4002b98SHong Zhang }
1646d4002b98SHong Zhang 
1647d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[])
1648d71ae5a4SJacob Faibussowitsch {
1649d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1650d4002b98SHong Zhang 
1651d4002b98SHong Zhang   PetscFunctionBegin;
1652d4002b98SHong Zhang   *array = a->val;
16533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1654d4002b98SHong Zhang }
1655d4002b98SHong Zhang 
1656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[])
1657d71ae5a4SJacob Faibussowitsch {
1658d4002b98SHong Zhang   PetscFunctionBegin;
16593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1660d4002b98SHong Zhang }
1661d4002b98SHong Zhang 
1662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_SeqSELL(Mat A)
1663d71ae5a4SJacob Faibussowitsch {
1664d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1665d4002b98SHong Zhang   PetscInt     i;
1666d4002b98SHong Zhang   MatScalar   *aval = a->val;
1667d4002b98SHong Zhang 
1668d4002b98SHong Zhang   PetscFunctionBegin;
1669d4002b98SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscRealPart(aval[i]);
16702d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16712d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
16722d1451d4SHong Zhang #endif
16733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1674d4002b98SHong Zhang }
1675d4002b98SHong Zhang 
1676d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_SeqSELL(Mat A)
1677d71ae5a4SJacob Faibussowitsch {
1678d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1679d4002b98SHong Zhang   PetscInt     i;
1680d4002b98SHong Zhang   MatScalar   *aval = a->val;
1681d4002b98SHong Zhang 
1682d4002b98SHong Zhang   PetscFunctionBegin;
1683d4002b98SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]);
16849566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(A));
16852d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
16862d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
16872d1451d4SHong Zhang #endif
16883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1689d4002b98SHong Zhang }
1690d4002b98SHong Zhang 
1691d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha)
1692d71ae5a4SJacob Faibussowitsch {
1693d4002b98SHong Zhang   Mat_SeqSELL *a      = (Mat_SeqSELL *)inA->data;
1694d4002b98SHong Zhang   MatScalar   *aval   = a->val;
1695d4002b98SHong Zhang   PetscScalar  oalpha = alpha;
1696d4002b98SHong Zhang   PetscBLASInt one    = 1, size;
1697d4002b98SHong Zhang 
1698d4002b98SHong Zhang   PetscFunctionBegin;
16999566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size));
1700792fecdfSBarry Smith   PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one));
17019566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(a->nz));
17029566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLInvalidateDiagonal(inA));
17032d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
17042d1451d4SHong Zhang   if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU;
17052d1451d4SHong Zhang #endif
17063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1707d4002b98SHong Zhang }
1708d4002b98SHong Zhang 
1709d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a)
1710d71ae5a4SJacob Faibussowitsch {
1711d4002b98SHong Zhang   Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data;
1712d4002b98SHong Zhang 
1713d4002b98SHong Zhang   PetscFunctionBegin;
171448a46eb9SPierre Jolivet   if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL));
17159566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
17163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1717d4002b98SHong Zhang }
1718d4002b98SHong Zhang 
1719d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1720d71ae5a4SJacob Faibussowitsch {
1721d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
1722d4002b98SHong Zhang   PetscScalar       *x, sum, *t;
1723f4259b30SLisandro Dalcin   const MatScalar   *idiag = NULL, *mdiag;
1724d4002b98SHong Zhang   const PetscScalar *b, *xb;
1725d4002b98SHong Zhang   PetscInt           n, m = A->rmap->n, i, j, shift;
1726d4002b98SHong Zhang   const PetscInt    *diag;
1727d4002b98SHong Zhang 
1728d4002b98SHong Zhang   PetscFunctionBegin;
1729d4002b98SHong Zhang   its = its * lits;
1730d4002b98SHong Zhang 
1731d4002b98SHong Zhang   if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */
17329566063dSJacob Faibussowitsch   if (!a->idiagvalid) PetscCall(MatInvertDiagonal_SeqSELL(A, omega, fshift));
1733d4002b98SHong Zhang   a->fshift = fshift;
1734d4002b98SHong Zhang   a->omega  = omega;
1735d4002b98SHong Zhang 
1736d4002b98SHong Zhang   diag  = a->diag;
1737d4002b98SHong Zhang   t     = a->ssor_work;
1738d4002b98SHong Zhang   idiag = a->idiag;
1739d4002b98SHong Zhang   mdiag = a->mdiag;
1740d4002b98SHong Zhang 
17419566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx, &x));
17429566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb, &b));
1743d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
174408401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented");
174508401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented");
1746aed4548fSBarry Smith   PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat");
1747d4002b98SHong Zhang 
1748d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1749d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1750d4002b98SHong Zhang       for (i = 0; i < m; i++) {
175107e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1752d4002b98SHong Zhang         sum   = b[i];
175307e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
175407e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1755d4002b98SHong Zhang         t[i] = sum;
1756d4002b98SHong Zhang         x[i] = sum * idiag[i];
1757d4002b98SHong Zhang       }
1758d4002b98SHong Zhang       xb = t;
17599566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz));
1760d4002b98SHong Zhang     } else xb = b;
1761d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1762d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
176307e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1764d4002b98SHong Zhang         sum   = xb[i];
176507e43b41SHong Zhang         n     = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
176607e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1767d4002b98SHong Zhang         if (xb == b) {
1768d4002b98SHong Zhang           x[i] = sum * idiag[i];
1769d4002b98SHong Zhang         } else {
1770d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1771d4002b98SHong Zhang         }
1772d4002b98SHong Zhang       }
17739566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1774d4002b98SHong Zhang     }
1775d4002b98SHong Zhang     its--;
1776d4002b98SHong Zhang   }
1777d4002b98SHong Zhang   while (its--) {
1778d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1779d4002b98SHong Zhang       for (i = 0; i < m; i++) {
1780d4002b98SHong Zhang         /* lower */
178107e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1782d4002b98SHong Zhang         sum   = b[i];
178307e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
178407e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1785d4002b98SHong Zhang         t[i] = sum; /* save application of the lower-triangular part */
1786d4002b98SHong Zhang         /* upper */
178707e43b41SHong Zhang         n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
178807e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1789d4002b98SHong Zhang         x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1790d4002b98SHong Zhang       }
1791d4002b98SHong Zhang       xb = t;
17929566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * a->nz));
1793d4002b98SHong Zhang     } else xb = b;
1794d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1795d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
179607e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1797d4002b98SHong Zhang         sum   = xb[i];
1798d4002b98SHong Zhang         if (xb == b) {
1799d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1800d4002b98SHong Zhang           n = a->rlen[i];
180107e43b41SHong Zhang           for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1802d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i];
1803d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
180407e43b41SHong Zhang           n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
180507e43b41SHong Zhang           for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1806d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1807d4002b98SHong Zhang         }
1808d4002b98SHong Zhang       }
1809d4002b98SHong Zhang       if (xb == b) {
18109566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * a->nz));
1811d4002b98SHong Zhang       } else {
18129566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1813d4002b98SHong Zhang       }
1814d4002b98SHong Zhang     }
1815d4002b98SHong Zhang   }
18169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx, &x));
18179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb, &b));
18183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1819d4002b98SHong Zhang }
1820d4002b98SHong Zhang 
1821d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
18226108893eSStefano Zampini                                        MatGetRow_SeqSELL,
18236108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1824d4002b98SHong Zhang                                        MatMult_SeqSELL,
1825d4002b98SHong Zhang                                        /* 4*/ MatMultAdd_SeqSELL,
1826d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1827d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1828f4259b30SLisandro Dalcin                                        NULL,
1829f4259b30SLisandro Dalcin                                        NULL,
1830f4259b30SLisandro Dalcin                                        NULL,
1831f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836d4002b98SHong Zhang                                        /* 15*/ MatGetInfo_SeqSELL,
1837d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1838d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1839d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        /* 20*/ NULL,
1842d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1843d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1844d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1845f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1846f4259b30SLisandro Dalcin                                        NULL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        NULL,
1850d4002b98SHong Zhang                                        /* 29*/ MatSetUp_SeqSELL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        NULL,
1855d4002b98SHong Zhang                                        /* 34*/ MatDuplicate_SeqSELL,
1856f4259b30SLisandro Dalcin                                        NULL,
1857f4259b30SLisandro Dalcin                                        NULL,
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        NULL,
1860f4259b30SLisandro Dalcin                                        /* 39*/ NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1864d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1865f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1866d4002b98SHong Zhang                                        MatScale_SeqSELL,
1867d4002b98SHong Zhang                                        MatShift_SeqSELL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        NULL,
1870f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        NULL,
1875d4002b98SHong Zhang                                        /* 54*/ MatFDColoringCreate_SeqXAIJ,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
1878f4259b30SLisandro Dalcin                                        NULL,
1879f4259b30SLisandro Dalcin                                        NULL,
1880f4259b30SLisandro Dalcin                                        /* 59*/ NULL,
1881d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1882d4002b98SHong Zhang                                        MatView_SeqSELL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        NULL,
1885f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
1888f4259b30SLisandro Dalcin                                        NULL,
1889f4259b30SLisandro Dalcin                                        NULL,
1890f4259b30SLisandro Dalcin                                        /* 69*/ NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        NULL,
1895f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
1896d4002b98SHong Zhang                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1897f4259b30SLisandro Dalcin                                        NULL,
1898f4259b30SLisandro Dalcin                                        NULL,
1899f4259b30SLisandro Dalcin                                        NULL,
1900f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        NULL,
1905f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        NULL,
1910f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
1913f4259b30SLisandro Dalcin                                        NULL,
1914f4259b30SLisandro Dalcin                                        NULL,
1915f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
1919f4259b30SLisandro Dalcin                                        NULL,
1920f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
1923d4002b98SHong Zhang                                        MatConjugate_SeqSELL,
1924f4259b30SLisandro Dalcin                                        NULL,
1925f4259b30SLisandro Dalcin                                        /*104*/ NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
1927f4259b30SLisandro Dalcin                                        NULL,
1928f4259b30SLisandro Dalcin                                        NULL,
1929f4259b30SLisandro Dalcin                                        NULL,
1930f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1931f4259b30SLisandro Dalcin                                        NULL,
1932f4259b30SLisandro Dalcin                                        NULL,
1933f4259b30SLisandro Dalcin                                        NULL,
1934d4002b98SHong Zhang                                        MatMissingDiagonal_SeqSELL,
1935f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1936f4259b30SLisandro Dalcin                                        NULL,
1937f4259b30SLisandro Dalcin                                        NULL,
1938f4259b30SLisandro Dalcin                                        NULL,
1939f4259b30SLisandro Dalcin                                        NULL,
1940f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1941f4259b30SLisandro Dalcin                                        NULL,
1942f4259b30SLisandro Dalcin                                        NULL,
1943f4259b30SLisandro Dalcin                                        NULL,
1944f4259b30SLisandro Dalcin                                        NULL,
1945f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1946f4259b30SLisandro Dalcin                                        NULL,
1947f4259b30SLisandro Dalcin                                        NULL,
1948f4259b30SLisandro Dalcin                                        NULL,
1949f4259b30SLisandro Dalcin                                        NULL,
1950f4259b30SLisandro Dalcin                                        /*129*/ NULL,
1951f4259b30SLisandro Dalcin                                        NULL,
1952f4259b30SLisandro Dalcin                                        NULL,
1953f4259b30SLisandro Dalcin                                        NULL,
1954f4259b30SLisandro Dalcin                                        NULL,
1955f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1956f4259b30SLisandro Dalcin                                        NULL,
1957f4259b30SLisandro Dalcin                                        NULL,
1958f4259b30SLisandro Dalcin                                        NULL,
1959f4259b30SLisandro Dalcin                                        NULL,
1960f4259b30SLisandro Dalcin                                        /*139*/ NULL,
1961f4259b30SLisandro Dalcin                                        NULL,
1962f4259b30SLisandro Dalcin                                        NULL,
1963d4002b98SHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
1964f4259b30SLisandro Dalcin                                        NULL,
1965d70f29a3SPierre Jolivet                                        /*144*/ NULL,
1966d70f29a3SPierre Jolivet                                        NULL,
1967d70f29a3SPierre Jolivet                                        NULL,
196899a7f59eSMark Adams                                        NULL,
196999a7f59eSMark Adams                                        NULL,
19707fb60732SBarry Smith                                        NULL,
1971dec0b466SHong Zhang                                        /*150*/ NULL,
1972dec0b466SHong Zhang                                        NULL};
1973d4002b98SHong Zhang 
1974d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1975d71ae5a4SJacob Faibussowitsch {
1976d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1977d4002b98SHong Zhang 
1978d4002b98SHong Zhang   PetscFunctionBegin;
197928b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1980d4002b98SHong Zhang 
1981d4002b98SHong Zhang   /* allocate space for values if not already there */
1982aa624791SPierre Jolivet   if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values));
1983d4002b98SHong Zhang 
1984d4002b98SHong Zhang   /* copy values over */
19859566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices]));
19863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1987d4002b98SHong Zhang }
1988d4002b98SHong Zhang 
1989d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1990d71ae5a4SJacob Faibussowitsch {
1991d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1992d4002b98SHong Zhang 
1993d4002b98SHong Zhang   PetscFunctionBegin;
199428b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
199528b400f6SJacob Faibussowitsch   PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");
19969566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices]));
19973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1998d4002b98SHong Zhang }
1999d4002b98SHong Zhang 
200007e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio)
200107e43b41SHong Zhang {
200207e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
200307e43b41SHong Zhang 
200407e43b41SHong Zhang   PetscFunctionBegin;
200507e43b41SHong Zhang   if (a->totalslices && a->sliidx[a->totalslices]) {
200607e43b41SHong Zhang     *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices];
200707e43b41SHong Zhang   } else {
200807e43b41SHong Zhang     *ratio = 0.0;
200907e43b41SHong Zhang   }
201007e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
201107e43b41SHong Zhang }
201207e43b41SHong Zhang 
201307e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth)
201407e43b41SHong Zhang {
201507e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
201607e43b41SHong Zhang   PetscInt     i, current_slicewidth;
201707e43b41SHong Zhang 
201807e43b41SHong Zhang   PetscFunctionBegin;
201907e43b41SHong Zhang   *slicewidth = 0;
202007e43b41SHong Zhang   for (i = 0; i < a->totalslices; i++) {
202107e43b41SHong Zhang     current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight;
202207e43b41SHong Zhang     if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth;
202307e43b41SHong Zhang   }
202407e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
202507e43b41SHong Zhang }
202607e43b41SHong Zhang 
202707e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth)
202807e43b41SHong Zhang {
202907e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
203007e43b41SHong Zhang 
203107e43b41SHong Zhang   PetscFunctionBegin;
203207e43b41SHong Zhang   *slicewidth = 0;
203307e43b41SHong Zhang   if (a->totalslices) { *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices; }
203407e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
203507e43b41SHong Zhang }
203607e43b41SHong Zhang 
203707e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight)
203807e43b41SHong Zhang {
203907e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
204007e43b41SHong Zhang 
204107e43b41SHong Zhang   PetscFunctionBegin;
204207e43b41SHong Zhang   if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS);
204307e43b41SHong Zhang   PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight);
204407e43b41SHong Zhang   a->sliceheight = sliceheight;
20454e58db63SHong Zhang #if defined(PETSC_HAVE_CUDA)
20464e58db63SHong Zhang   PetscCheck(DEVICE_MEM_ALIGN % sliceheight == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "DEVICE_MEM_ALIGN is not divisible by the slice height %" PetscInt_FMT, sliceheight);
20474e58db63SHong Zhang #endif
204807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
204907e43b41SHong Zhang }
205007e43b41SHong Zhang 
2051d4002b98SHong Zhang /*@C
205211a5261eSBarry Smith   MatSeqSELLRestoreArray - returns access to the array where the data for a `MATSEQSELL` matrix is stored obtained by `MatSeqSELLGetArray()`
2053d4002b98SHong Zhang 
2054d4002b98SHong Zhang   Not Collective
2055d4002b98SHong Zhang 
2056d4002b98SHong Zhang   Input Parameters:
205707e43b41SHong Zhang +  A - a `MATSEQSELL` matrix
205820f4b53cSBarry Smith -  array - pointer to the data
2059d4002b98SHong Zhang 
2060d4002b98SHong Zhang   Level: intermediate
2061d4002b98SHong Zhang 
206267be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MatSeqSELLGetArray()`, `MatSeqSELLRestoreArrayF90()`
2063d4002b98SHong Zhang @*/
2064d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray(Mat A, PetscScalar **array)
2065d71ae5a4SJacob Faibussowitsch {
2066d4002b98SHong Zhang   PetscFunctionBegin;
2067cac4c232SBarry Smith   PetscUseMethod(A, "MatSeqSELLRestoreArray_C", (Mat, PetscScalar **), (A, array));
20683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2069d4002b98SHong Zhang }
2070d4002b98SHong Zhang 
207107e43b41SHong Zhang /*@C
207207e43b41SHong Zhang   MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix.
207307e43b41SHong Zhang 
207407e43b41SHong Zhang   Not Collective
207507e43b41SHong Zhang 
207607e43b41SHong Zhang   Input Parameter:
207707e43b41SHong Zhang .  A - a MATSEQSELL matrix
207807e43b41SHong Zhang 
207907e43b41SHong Zhang   Output Parameter:
208007e43b41SHong Zhang .  ratio - ratio of number of padded zeros to number of allocated elements
208107e43b41SHong Zhang 
208207e43b41SHong Zhang   Level: intermediate
208307e43b41SHong Zhang @*/
208407e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio)
208507e43b41SHong Zhang {
208607e43b41SHong Zhang   PetscFunctionBegin;
208707e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio));
208807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
208907e43b41SHong Zhang }
209007e43b41SHong Zhang 
209107e43b41SHong Zhang /*@C
209207e43b41SHong Zhang   MatSeqSELLGetMaxSliceWidth - returns the maximum slice width.
209307e43b41SHong Zhang 
209407e43b41SHong Zhang   Not Collective
209507e43b41SHong Zhang 
209607e43b41SHong Zhang   Input Parameter:
209707e43b41SHong Zhang .  A - a MATSEQSELL matrix
209807e43b41SHong Zhang 
209907e43b41SHong Zhang   Output Parameter:
210007e43b41SHong Zhang .  slicewidth - maximum slice width
210107e43b41SHong Zhang 
210207e43b41SHong Zhang  Level: intermediate
210307e43b41SHong Zhang @*/
210407e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth)
210507e43b41SHong Zhang {
210607e43b41SHong Zhang   PetscFunctionBegin;
210707e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth));
210807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
210907e43b41SHong Zhang }
211007e43b41SHong Zhang 
211107e43b41SHong Zhang /*@C
211207e43b41SHong Zhang   MatSeqSELLGetAvgSliceWidth - returns the average slice width.
211307e43b41SHong Zhang 
211407e43b41SHong Zhang   Not Collective
211507e43b41SHong Zhang 
211607e43b41SHong Zhang   Input Parameter:
211707e43b41SHong Zhang .  A - a MATSEQSELL matrix
211807e43b41SHong Zhang 
211907e43b41SHong Zhang   Output Parameter:
212007e43b41SHong Zhang .  slicewidth - average slice width
212107e43b41SHong Zhang 
212207e43b41SHong Zhang   Level: intermediate
212307e43b41SHong Zhang @*/
212407e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth)
212507e43b41SHong Zhang {
212607e43b41SHong Zhang   PetscFunctionBegin;
212707e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth));
212807e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
212907e43b41SHong Zhang }
213007e43b41SHong Zhang 
213107e43b41SHong Zhang /*@C
213207e43b41SHong Zhang   MatSeqSELLSetSliceHeight - sets the slice height.
213307e43b41SHong Zhang 
213407e43b41SHong Zhang   Not Collective
213507e43b41SHong Zhang 
213607e43b41SHong Zhang   Input Parameters:
213707e43b41SHong Zhang +  A - a MATSEQSELL matrix
213807e43b41SHong Zhang -  sliceheight - slice height
213907e43b41SHong Zhang 
214007e43b41SHong Zhang   Notes:
214107e43b41SHong Zhang   You cannot change the slice height once it have been set.
214207e43b41SHong Zhang 
214307e43b41SHong Zhang   The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called.
214407e43b41SHong Zhang 
214507e43b41SHong Zhang   Level: intermediate
214607e43b41SHong Zhang @*/
214707e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight)
214807e43b41SHong Zhang {
214907e43b41SHong Zhang   PetscFunctionBegin;
215007e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight));
215107e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
215207e43b41SHong Zhang }
215307e43b41SHong Zhang 
215407e43b41SHong Zhang /*@C
215507e43b41SHong Zhang   MatSeqSELLGetVarSliceSize - returns the variance of the slice size.
215607e43b41SHong Zhang 
215707e43b41SHong Zhang   Not Collective
215807e43b41SHong Zhang 
215907e43b41SHong Zhang   Input Parameter:
216007e43b41SHong Zhang .  A - a MATSEQSELL matrix
216107e43b41SHong Zhang 
216207e43b41SHong Zhang   Output Parameter:
216307e43b41SHong Zhang .  variance - variance of the slice size
216407e43b41SHong Zhang 
216507e43b41SHong Zhang   Level: intermediate
216607e43b41SHong Zhang @*/
216707e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance)
216807e43b41SHong Zhang {
216907e43b41SHong Zhang   PetscFunctionBegin;
217007e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance));
217107e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
217207e43b41SHong Zhang }
217307e43b41SHong Zhang 
21742d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
21752d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat);
21762d1451d4SHong Zhang #endif
21772d1451d4SHong Zhang 
2178d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
2179d71ae5a4SJacob Faibussowitsch {
2180d4002b98SHong Zhang   Mat_SeqSELL *b;
2181d4002b98SHong Zhang   PetscMPIInt  size;
2182d4002b98SHong Zhang 
2183d4002b98SHong Zhang   PetscFunctionBegin;
21849566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(citation, &cited));
21859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
218608401ef6SPierre Jolivet   PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1");
2187d4002b98SHong Zhang 
21884dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2189d4002b98SHong Zhang 
2190d4002b98SHong Zhang   B->data = (void *)b;
2191d4002b98SHong Zhang 
21929566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps)));
2193d4002b98SHong Zhang 
2194f4259b30SLisandro Dalcin   b->row                = NULL;
2195f4259b30SLisandro Dalcin   b->col                = NULL;
2196f4259b30SLisandro Dalcin   b->icol               = NULL;
2197d4002b98SHong Zhang   b->reallocs           = 0;
2198d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
2199d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
2200d4002b98SHong Zhang   b->nonew              = 0;
2201f4259b30SLisandro Dalcin   b->diag               = NULL;
2202f4259b30SLisandro Dalcin   b->solve_work         = NULL;
2203f4259b30SLisandro Dalcin   B->spptr              = NULL;
2204f4259b30SLisandro Dalcin   b->saved_values       = NULL;
2205f4259b30SLisandro Dalcin   b->idiag              = NULL;
2206f4259b30SLisandro Dalcin   b->mdiag              = NULL;
2207f4259b30SLisandro Dalcin   b->ssor_work          = NULL;
2208d4002b98SHong Zhang   b->omega              = 1.0;
2209d4002b98SHong Zhang   b->fshift             = 0.0;
2210d4002b98SHong Zhang   b->idiagvalid         = PETSC_FALSE;
2211d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
221207e43b41SHong Zhang   b->sliceheight        = 0;
2213d4002b98SHong Zhang 
22149566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL));
22159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL));
22169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL));
22179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL));
22189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL));
22199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL));
22202d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_SeqSELL_SeqAIJ_C", MatConvert_SeqSELL_SeqAIJ));
22212d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
22222d1451d4SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_SeqSELL_SeqSELLCUDA_C", MatConvert_SeqSELL_SeqSELLCUDA));
22232d1451d4SHong Zhang #endif
222407e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL));
222507e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL));
222607e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL));
222707e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL));
222807e43b41SHong Zhang 
222907e43b41SHong Zhang   PetscObjectOptionsBegin((PetscObject)B);
223007e43b41SHong Zhang   {
223107e43b41SHong Zhang     PetscInt  newsh = -1;
223207e43b41SHong Zhang     PetscBool flg;
2233*90d2215bSHong Zhang #if defined(PETSC_HAVE_CUDA)
2234*90d2215bSHong Zhang     PetscInt chunksize = 0;
2235*90d2215bSHong Zhang #endif
223607e43b41SHong Zhang 
223707e43b41SHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg));
223807e43b41SHong Zhang     if (flg) { PetscCall(MatSeqSELLSetSliceHeight(B, newsh)); }
2239*90d2215bSHong Zhang #if defined(PETSC_HAVE_CUDA)
2240*90d2215bSHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_chunk_size", "Set the chunksize for load-balanced CUDA kernels. Choices include 64,128,256,512,1024", NULL, chunksize, &chunksize, &flg));
2241*90d2215bSHong Zhang     if (flg) {
2242*90d2215bSHong Zhang       PetscCheck(chunksize >= 64 && chunksize <= 1024 && chunksize % 64 == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "chunksize must be a number in {64,128,256,512,1024}: value %" PetscInt_FMT, chunksize);
2243*90d2215bSHong Zhang       b->chunksize = chunksize;
2244*90d2215bSHong Zhang     }
2245*90d2215bSHong Zhang #endif
224607e43b41SHong Zhang   }
224707e43b41SHong Zhang   PetscOptionsEnd();
22483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2249d4002b98SHong Zhang }
2250d4002b98SHong Zhang 
2251d4002b98SHong Zhang /*
2252d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
2253d4002b98SHong Zhang  */
2254d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace)
2255d71ae5a4SJacob Faibussowitsch {
2256ed73aabaSBarry Smith   Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data;
2257d4002b98SHong Zhang   PetscInt     i, m                           = A->rmap->n;
2258d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2259d4002b98SHong Zhang 
2260d4002b98SHong Zhang   PetscFunctionBegin;
2261d4002b98SHong Zhang   C->factortype = A->factortype;
2262f4259b30SLisandro Dalcin   c->row        = NULL;
2263f4259b30SLisandro Dalcin   c->col        = NULL;
2264f4259b30SLisandro Dalcin   c->icol       = NULL;
2265d4002b98SHong Zhang   c->reallocs   = 0;
2266d4002b98SHong Zhang   C->assembled  = PETSC_TRUE;
2267d4002b98SHong Zhang 
22689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
22699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
2270d4002b98SHong Zhang 
227107e43b41SHong Zhang   PetscCall(PetscMalloc1(a->sliceheight * totalslices, &c->rlen));
22729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx));
2273d4002b98SHong Zhang 
2274d4002b98SHong Zhang   for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i];
2275d4002b98SHong Zhang   for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i];
2276d4002b98SHong Zhang 
2277d4002b98SHong Zhang   /* allocate the matrix space */
2278d4002b98SHong Zhang   if (mallocmatspace) {
22799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx));
2280d4002b98SHong Zhang 
2281d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2282d4002b98SHong Zhang 
2283d4002b98SHong Zhang     if (m > 0) {
22849566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat));
2285d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
22869566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat));
2287d4002b98SHong Zhang       } else {
22889566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(c->val, a->maxallocmat));
2289d4002b98SHong Zhang       }
2290d4002b98SHong Zhang     }
2291d4002b98SHong Zhang   }
2292d4002b98SHong Zhang 
2293d4002b98SHong Zhang   c->ignorezeroentries = a->ignorezeroentries;
2294d4002b98SHong Zhang   c->roworiented       = a->roworiented;
2295d4002b98SHong Zhang   c->nonew             = a->nonew;
2296d4002b98SHong Zhang   if (a->diag) {
22979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m, &c->diag));
2298ad540459SPierre Jolivet     for (i = 0; i < m; i++) c->diag[i] = a->diag[i];
2299f4259b30SLisandro Dalcin   } else c->diag = NULL;
2300d4002b98SHong Zhang 
2301f4259b30SLisandro Dalcin   c->solve_work         = NULL;
2302f4259b30SLisandro Dalcin   c->saved_values       = NULL;
2303f4259b30SLisandro Dalcin   c->idiag              = NULL;
2304f4259b30SLisandro Dalcin   c->ssor_work          = NULL;
2305d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2306d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2307d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2308d4002b98SHong Zhang 
2309d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2310d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2311d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2312d4002b98SHong Zhang   c->nz           = a->nz;
2313d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2314d4002b98SHong Zhang 
2315d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2316d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2317d4002b98SHong Zhang 
23189566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
23193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2320d4002b98SHong Zhang }
2321d4002b98SHong Zhang 
2322d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B)
2323d71ae5a4SJacob Faibussowitsch {
2324d4002b98SHong Zhang   PetscFunctionBegin;
23259566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
23269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
232748a46eb9SPierre Jolivet   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A));
23289566063dSJacob Faibussowitsch   PetscCall(MatSetType(*B, ((PetscObject)A)->type_name));
23299566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE));
23303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2331d4002b98SHong Zhang }
2332d4002b98SHong Zhang 
2333ed73aabaSBarry Smith /*MC
2334ed73aabaSBarry Smith    MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices,
2335ed73aabaSBarry Smith    based on the sliced Ellpack format
2336ed73aabaSBarry Smith 
233720f4b53cSBarry Smith    Options Database Key:
233811a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()`
2339ed73aabaSBarry Smith 
2340ed73aabaSBarry Smith    Level: beginner
2341ed73aabaSBarry Smith 
234267be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSell()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
2343ed73aabaSBarry Smith M*/
2344ed73aabaSBarry Smith 
2345ed73aabaSBarry Smith /*MC
2346ed73aabaSBarry Smith    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices.
2347ed73aabaSBarry Smith 
234811a5261eSBarry Smith    This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator,
234911a5261eSBarry Smith    and `MATMPISELL` otherwise.  As a result, for single process communicators,
235011a5261eSBarry Smith   `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported
2351ed73aabaSBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
2352ed73aabaSBarry Smith   the above preallocation routines for simplicity.
2353ed73aabaSBarry Smith 
235420f4b53cSBarry Smith    Options Database Key:
2355ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
2356ed73aabaSBarry Smith 
2357ed73aabaSBarry Smith   Level: beginner
2358ed73aabaSBarry Smith 
2359ed73aabaSBarry Smith   Notes:
2360ed73aabaSBarry Smith    This format is only supported for real scalars, double precision, and 32 bit indices (the defaults).
2361ed73aabaSBarry Smith 
2362ed73aabaSBarry Smith    It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of
2363ed73aabaSBarry Smith    non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement.
2364ed73aabaSBarry Smith 
2365ed73aabaSBarry Smith   Developer Notes:
2366ed73aabaSBarry Smith    On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance.
2367ed73aabaSBarry Smith 
2368ed73aabaSBarry Smith    The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8
2369ed73aabaSBarry Smith .vb
2370ed73aabaSBarry Smith                             (2 0  3 4)
2371ed73aabaSBarry Smith    Consider the matrix A =  (5 0  6 0)
2372ed73aabaSBarry Smith                             (0 0  7 8)
2373ed73aabaSBarry Smith                             (0 0  9 9)
2374ed73aabaSBarry Smith 
2375ed73aabaSBarry Smith    symbolically the Ellpack format can be written as
2376ed73aabaSBarry Smith 
2377ed73aabaSBarry Smith         (2 3 4 |)           (0 2 3 |)
2378ed73aabaSBarry Smith    v =  (5 6 0 |)  colidx = (0 2 2 |)
2379ed73aabaSBarry Smith         --------            ---------
2380ed73aabaSBarry Smith         (7 8 |)             (2 3 |)
2381ed73aabaSBarry Smith         (9 9 |)             (2 3 |)
2382ed73aabaSBarry Smith 
2383ed73aabaSBarry Smith     The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case).
2384ed73aabaSBarry Smith     Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and
2385ed73aabaSBarry Smith     zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice.
2386ed73aabaSBarry Smith 
2387ed73aabaSBarry Smith     The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9)  and for colidx is (0 0 2 2 3 2 2 2 3 3)
2388ed73aabaSBarry Smith 
2389ed73aabaSBarry Smith .ve
2390ed73aabaSBarry Smith 
2391ed73aabaSBarry Smith       See MatMult_SeqSELL() for how this format is used with the SIMD operations to achieve high performance.
2392ed73aabaSBarry Smith 
2393ed73aabaSBarry Smith  References:
2394606c0280SSatish Balay . * - Hong Zhang, Richard T. Mills, Karl Rupp, and Barry F. Smith, Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512},
2395ed73aabaSBarry Smith    Proceedings of the 47th International Conference on Parallel Processing, 2018.
2396ed73aabaSBarry Smith 
239767be906fSBarry Smith .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSell()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
2398ed73aabaSBarry Smith M*/
2399ed73aabaSBarry Smith 
2400d4002b98SHong Zhang /*@C
240111a5261eSBarry Smith        MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format.
2402d4002b98SHong Zhang 
24032ef1f0ffSBarry Smith  Collective
2404d4002b98SHong Zhang 
2405d4002b98SHong Zhang  Input Parameters:
240611a5261eSBarry Smith +  comm - MPI communicator, set to `PETSC_COMM_SELF`
2407d4002b98SHong Zhang .  m - number of rows
2408d4002b98SHong Zhang .  n - number of columns
240920f4b53cSBarry Smith .  rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided
241020f4b53cSBarry Smith -  rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL
2411d4002b98SHong Zhang 
2412d4002b98SHong Zhang  Output Parameter:
2413d4002b98SHong Zhang .  A - the matrix
2414d4002b98SHong Zhang 
241520f4b53cSBarry Smith  Level: intermediate
241620f4b53cSBarry Smith 
241720f4b53cSBarry Smith  Notes:
241811a5261eSBarry Smith  It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2419f6f02116SRichard Tran Mills  MatXXXXSetPreallocation() paradigm instead of this routine directly.
242011a5261eSBarry Smith  [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`]
2421d4002b98SHong Zhang 
242220f4b53cSBarry Smith  Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
242320f4b53cSBarry Smith  Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
242420f4b53cSBarry Smith  allocation.
2425d4002b98SHong Zhang 
242667be906fSBarry Smith  .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATSEQSELL`, `MATMPISELL`
2427d4002b98SHong Zhang  @*/
242820f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A)
2429d71ae5a4SJacob Faibussowitsch {
2430d4002b98SHong Zhang   PetscFunctionBegin;
24319566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
24329566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, m, n));
24339566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A, MATSEQSELL));
243420f4b53cSBarry Smith   PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen));
24353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2436d4002b98SHong Zhang }
2437d4002b98SHong Zhang 
2438d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg)
2439d71ae5a4SJacob Faibussowitsch {
2440d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data;
2441d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2442d4002b98SHong Zhang 
2443d4002b98SHong Zhang   PetscFunctionBegin;
2444d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2445d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2446d4002b98SHong Zhang     *flg = PETSC_FALSE;
24473ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2448d4002b98SHong Zhang   }
2449d4002b98SHong Zhang   /* if the a->colidx are the same */
24509566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg));
24513ba16761SJacob Faibussowitsch   if (!*flg) PetscFunctionReturn(PETSC_SUCCESS);
2452d4002b98SHong Zhang   /* if a->val are the same */
24539566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg));
24543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2455d4002b98SHong Zhang }
2456d4002b98SHong Zhang 
2457d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A)
2458d71ae5a4SJacob Faibussowitsch {
2459d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2460d4002b98SHong Zhang 
2461d4002b98SHong Zhang   PetscFunctionBegin;
2462d4002b98SHong Zhang   a->idiagvalid = PETSC_FALSE;
24633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2464d4002b98SHong Zhang }
2465d4002b98SHong Zhang 
2466d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A)
2467d71ae5a4SJacob Faibussowitsch {
2468d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
2469d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2470d4002b98SHong Zhang   PetscInt     i;
2471d4002b98SHong Zhang   PetscScalar *val = a->val;
2472d4002b98SHong Zhang 
2473d4002b98SHong Zhang   PetscFunctionBegin;
24742d1451d4SHong Zhang   for (i = 0; i < a->sliidx[a->totalslices]; i++) { val[i] = PetscConj(val[i]); }
24752d1451d4SHong Zhang   #if defined(PETSC_HAVE_CUDA)
24762d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
24772d1451d4SHong Zhang   #endif
2478d4002b98SHong Zhang #else
2479d4002b98SHong Zhang   PetscFunctionBegin;
2480d4002b98SHong Zhang #endif
24813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2482d4002b98SHong Zhang }
2483