1d4002b98SHong Zhang 2d4002b98SHong Zhang /* 3d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format. 4d4002b98SHong Zhang */ 5d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/ 6d4002b98SHong Zhang #include <petscblaslapack.h> 7d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h> 85f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 94243e2ceSHong Zhang 10d4002b98SHong Zhang #include <immintrin.h> 11d4002b98SHong Zhang 12d4002b98SHong Zhang #if !defined(_MM_SCALE_8) 13d4002b98SHong Zhang #define _MM_SCALE_8 8 14d4002b98SHong Zhang #endif 15d4002b98SHong Zhang 16d4002b98SHong Zhang #if defined(__AVX512F__) 17d4002b98SHong Zhang /* these do not work 18d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx); 19d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval); 20d4002b98SHong Zhang */ 21d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 22d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \ 23ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const*)acolidx); \ 24ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \ 25d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx,x,_MM_SCALE_8); \ 26a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x,vec_vals,vec_y) 275f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__) 28a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y) \ 29ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \ 30ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const*)acolidx); /* SSE2 */ \ 31a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x,vec_idx,_MM_SCALE_8); \ 32a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x,vec_vals,vec_y) 33d4002b98SHong Zhang #endif 34d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */ 35d4002b98SHong Zhang 36d4002b98SHong Zhang /*@C 37d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance 38d4002b98SHong Zhang the user should preallocate the matrix storage by setting the parameter nz 39d4002b98SHong Zhang (or the array nnz). By setting these parameters accurately, performance 40d4002b98SHong Zhang during matrix assembly can be increased significantly. 41d4002b98SHong Zhang 42d4002b98SHong Zhang Collective on MPI_Comm 43d4002b98SHong Zhang 44d4002b98SHong Zhang Input Parameters: 45d4002b98SHong Zhang + B - The matrix 46d4002b98SHong Zhang . nz - number of nonzeros per row (same for all rows) 47d4002b98SHong Zhang - nnz - array containing the number of nonzeros in the various rows 48d4002b98SHong Zhang (possibly different for each row) or NULL 49d4002b98SHong Zhang 50d4002b98SHong Zhang Notes: 51d4002b98SHong Zhang If nnz is given then nz is ignored. 52d4002b98SHong Zhang 53d4002b98SHong Zhang Specify the preallocated storage with either nz or nnz (not both). 54d4002b98SHong Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 55d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 56d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 57d4002b98SHong Zhang 58d4002b98SHong Zhang You can call MatGetInfo() to get information on how effective the preallocation was; 59d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 60d4002b98SHong Zhang You can also run with the option -info and look for messages with the string 61d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed. 62d4002b98SHong Zhang 63d4002b98SHong Zhang Developers: Use nz of MAT_SKIP_ALLOCATION to not allocate any space for the matrix 64d4002b98SHong Zhang entries or columns indices. 65d4002b98SHong Zhang 66d4002b98SHong Zhang The maximum number of nonzeos in any row should be as accuate as possible. 67d4002b98SHong Zhang If it is underesitmated, you will get bad performance due to reallocation 68d4002b98SHong Zhang (MatSeqXSELLReallocateSELL). 69d4002b98SHong Zhang 70d4002b98SHong Zhang Level: intermediate 71d4002b98SHong Zhang 72d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatGetInfo() 73d4002b98SHong Zhang 74d4002b98SHong Zhang @*/ 75d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[]) 76d4002b98SHong Zhang { 77d4002b98SHong Zhang PetscErrorCode ierr; 78d4002b98SHong Zhang 79d4002b98SHong Zhang PetscFunctionBegin; 80d4002b98SHong Zhang PetscValidHeaderSpecific(B,MAT_CLASSID,1); 81d4002b98SHong Zhang PetscValidType(B,1); 82d4002b98SHong Zhang ierr = PetscTryMethod(B,"MatSeqSELLSetPreallocation_C",(Mat,PetscInt,const PetscInt[]),(B,rlenmax,rlen));CHKERRQ(ierr); 83d4002b98SHong Zhang PetscFunctionReturn(0); 84d4002b98SHong Zhang } 85d4002b98SHong Zhang 86d4002b98SHong Zhang PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[]) 87d4002b98SHong Zhang { 88d4002b98SHong Zhang Mat_SeqSELL *b; 89d4002b98SHong Zhang PetscInt i,j,totalslices; 90d4002b98SHong Zhang PetscBool skipallocation=PETSC_FALSE,realalloc=PETSC_FALSE; 91d4002b98SHong Zhang PetscErrorCode ierr; 92d4002b98SHong Zhang 93d4002b98SHong Zhang PetscFunctionBegin; 94d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE; 95d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) { 96d4002b98SHong Zhang skipallocation = PETSC_TRUE; 97d4002b98SHong Zhang maxallocrow = 0; 98d4002b98SHong Zhang } 99d4002b98SHong Zhang 100d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 101d4002b98SHong Zhang ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 102d4002b98SHong Zhang 103d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */ 104d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5; 105d4002b98SHong Zhang if (maxallocrow < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"maxallocrow cannot be less than 0: value %D",maxallocrow); 106d4002b98SHong Zhang if (rlen) { 107d4002b98SHong Zhang for (i=0; i<B->rmap->n; i++) { 108d4002b98SHong Zhang if (rlen[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be less than 0: local row %D value %D",i,rlen[i]); 109d4002b98SHong Zhang if (rlen[i] > B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"rlen cannot be greater than row length: local row %D value %D rowlength %D",i,rlen[i],B->cmap->n); 110d4002b98SHong Zhang } 111d4002b98SHong Zhang } 112d4002b98SHong Zhang 113d4002b98SHong Zhang B->preallocated = PETSC_TRUE; 114d4002b98SHong Zhang 115d4002b98SHong Zhang b = (Mat_SeqSELL*)B->data; 116d4002b98SHong Zhang 117d4002b98SHong Zhang totalslices = B->rmap->n/8+((B->rmap->n & 0x07)?1:0); /* ceil(n/8) */ 118d4002b98SHong Zhang b->totalslices = totalslices; 119d4002b98SHong Zhang if (!skipallocation) { 120*994fe344SLisandro Dalcin if (B->rmap->n & 0x07) {ierr = PetscInfo1(B,"Padding rows to the SEQSELL matrix because the number of rows is not the multiple of 8 (value %D)\n",B->rmap->n);CHKERRQ(ierr);} 121d4002b98SHong Zhang 122d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */ 123d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&b->sliidx);CHKERRQ(ierr); 124d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,(totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 125d4002b98SHong Zhang } 126d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */ 127d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10; 128d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1; 129d4002b98SHong Zhang for (i=0; i<=totalslices; i++) b->sliidx[i] = i*8*maxallocrow; 130d4002b98SHong Zhang } else { 131d4002b98SHong Zhang maxallocrow = 0; 132d4002b98SHong Zhang b->sliidx[0] = 0; 133d4002b98SHong Zhang for (i=1; i<totalslices; i++) { 134d4002b98SHong Zhang b->sliidx[i] = 0; 135d4002b98SHong Zhang for (j=0;j<8;j++) { 136d4002b98SHong Zhang b->sliidx[i] = PetscMax(b->sliidx[i],rlen[8*(i-1)+j]); 137d4002b98SHong Zhang } 138d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i],maxallocrow); 139d4002b98SHong Zhang b->sliidx[i] = b->sliidx[i-1] + 8*b->sliidx[i]; 140d4002b98SHong Zhang } 141d4002b98SHong Zhang /* last slice */ 142d4002b98SHong Zhang b->sliidx[totalslices] = 0; 143d4002b98SHong Zhang for (j=(totalslices-1)*8;j<B->rmap->n;j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices],rlen[j]); 144d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices],maxallocrow); 145d4002b98SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices-1] + 8*b->sliidx[totalslices]; 146d4002b98SHong Zhang } 147d4002b98SHong Zhang 148d4002b98SHong Zhang /* allocate space for val, colidx, rlen */ 149d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */ 150d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(B,&b->val,&b->colidx);CHKERRQ(ierr); 151d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */ 152d4002b98SHong Zhang ierr = PetscMalloc2(b->sliidx[totalslices],&b->val,b->sliidx[totalslices],&b->colidx);CHKERRQ(ierr); 153d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,b->sliidx[totalslices]*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 154d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */ 155d4002b98SHong Zhang ierr = PetscCalloc1(8*totalslices,&b->rlen);CHKERRQ(ierr); 156d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)B,8*totalslices*sizeof(PetscInt));CHKERRQ(ierr); 157d4002b98SHong Zhang 158d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE; 159d4002b98SHong Zhang b->free_val = PETSC_TRUE; 160d4002b98SHong Zhang b->free_colidx = PETSC_TRUE; 161d4002b98SHong Zhang } else { 162d4002b98SHong Zhang b->free_val = PETSC_FALSE; 163d4002b98SHong Zhang b->free_colidx = PETSC_FALSE; 164d4002b98SHong Zhang } 165d4002b98SHong Zhang 166d4002b98SHong Zhang b->nz = 0; 167d4002b98SHong Zhang b->maxallocrow = maxallocrow; 168d4002b98SHong Zhang b->rlenmax = maxallocrow; 169d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices]; 170d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat; 171d4002b98SHong Zhang if (realalloc) { 172d4002b98SHong Zhang ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 173d4002b98SHong Zhang } 174d4002b98SHong Zhang PetscFunctionReturn(0); 175d4002b98SHong Zhang } 176d4002b98SHong Zhang 1776108893eSStefano Zampini PetscErrorCode MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1786108893eSStefano Zampini { 1796108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL*)A->data; 1806108893eSStefano Zampini PetscInt shift; 1816108893eSStefano Zampini 1826108893eSStefano Zampini PetscFunctionBegin; 1836108893eSStefano Zampini if (row < 0 || row >= A->rmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range",row); 1846108893eSStefano Zampini if (nz) *nz = a->rlen[row]; 1856108893eSStefano Zampini shift = a->sliidx[row>>3]+(row&0x07); 1866108893eSStefano Zampini if (!a->getrowcols) { 1876108893eSStefano Zampini PetscErrorCode ierr; 1886108893eSStefano Zampini 1896108893eSStefano Zampini ierr = PetscMalloc2(a->rlenmax,&a->getrowcols,a->rlenmax,&a->getrowvals);CHKERRQ(ierr); 1906108893eSStefano Zampini } 1916108893eSStefano Zampini if (idx) { 1926108893eSStefano Zampini PetscInt j; 1936108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift+8*j]; 1946108893eSStefano Zampini *idx = a->getrowcols; 1956108893eSStefano Zampini } 1966108893eSStefano Zampini if (v) { 1976108893eSStefano Zampini PetscInt j; 1986108893eSStefano Zampini for (j=0; j<a->rlen[row]; j++) a->getrowvals[j] = a->val[shift+8*j]; 1996108893eSStefano Zampini *v = a->getrowvals; 2006108893eSStefano Zampini } 2016108893eSStefano Zampini PetscFunctionReturn(0); 2026108893eSStefano Zampini } 2036108893eSStefano Zampini 2046108893eSStefano Zampini PetscErrorCode MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 2056108893eSStefano Zampini { 2066108893eSStefano Zampini PetscFunctionBegin; 2076108893eSStefano Zampini PetscFunctionReturn(0); 2086108893eSStefano Zampini } 2096108893eSStefano Zampini 210d4002b98SHong Zhang PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 211d4002b98SHong Zhang { 212d4002b98SHong Zhang Mat B; 213d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 214e3f1f374SStefano Zampini PetscInt i; 215d4002b98SHong Zhang PetscErrorCode ierr; 216d4002b98SHong Zhang 217d4002b98SHong Zhang PetscFunctionBegin; 218ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 219ad013a7bSRichard Tran Mills B = *newmat; 220e3f1f374SStefano Zampini ierr = MatZeroEntries(B);CHKERRQ(ierr); 221ad013a7bSRichard Tran Mills } else { 222d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 223d4002b98SHong Zhang ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 224d4002b98SHong Zhang ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 225d4002b98SHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,a->rlen);CHKERRQ(ierr); 226ad013a7bSRichard Tran Mills } 227d4002b98SHong Zhang 228e3f1f374SStefano Zampini for (i=0; i<A->rmap->n; i++) { 229e108cb99SStefano Zampini PetscInt nz = 0,*cols = NULL; 230e108cb99SStefano Zampini PetscScalar *vals = NULL; 231e3f1f374SStefano Zampini 232e3f1f374SStefano Zampini ierr = MatGetRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 233e3f1f374SStefano Zampini ierr = MatSetValues(B,1,&i,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 234e3f1f374SStefano Zampini ierr = MatRestoreRow_SeqSELL(A,i,&nz,&cols,&vals);CHKERRQ(ierr); 235d4002b98SHong Zhang } 236e3f1f374SStefano Zampini 237d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 238d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 240d4002b98SHong Zhang 241d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 242d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 243d4002b98SHong Zhang } else { 244d4002b98SHong Zhang *newmat = B; 245d4002b98SHong Zhang } 246d4002b98SHong Zhang PetscFunctionReturn(0); 247d4002b98SHong Zhang } 248d4002b98SHong Zhang 249d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h> 250d4002b98SHong Zhang 251d4002b98SHong Zhang PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 252d4002b98SHong Zhang { 253d4002b98SHong Zhang Mat B; 254d4002b98SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 255d4002b98SHong Zhang PetscInt *ai=a->i,m=A->rmap->N,n=A->cmap->N,i,*rowlengths,row,ncols; 256d4002b98SHong Zhang const PetscInt *cols; 257d4002b98SHong Zhang const PetscScalar *vals; 258d4002b98SHong Zhang PetscErrorCode ierr; 259d4002b98SHong Zhang 260d4002b98SHong Zhang PetscFunctionBegin; 261d4002b98SHong Zhang if (A->rmap->bs > 1) { 262d4002b98SHong Zhang ierr = MatConvert_Basic(A,newtype,reuse,newmat);CHKERRQ(ierr); 263d4002b98SHong Zhang PetscFunctionReturn(0); 264d4002b98SHong Zhang } 265ad013a7bSRichard Tran Mills 266ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) { 267ad013a7bSRichard Tran Mills B = *newmat; 268ad013a7bSRichard Tran Mills } else { 269d4002b98SHong Zhang /* Can we just use ilen? */ 270d4002b98SHong Zhang ierr = PetscMalloc1(m,&rowlengths);CHKERRQ(ierr); 271d4002b98SHong Zhang for (i=0; i<m; i++) { 272d4002b98SHong Zhang rowlengths[i] = ai[i+1] - ai[i]; 273d4002b98SHong Zhang } 274d4002b98SHong Zhang 275d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 276d4002b98SHong Zhang ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 277d4002b98SHong Zhang ierr = MatSetType(B,MATSEQSELL);CHKERRQ(ierr); 278d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(B,0,rowlengths);CHKERRQ(ierr); 279d4002b98SHong Zhang ierr = PetscFree(rowlengths);CHKERRQ(ierr); 280ad013a7bSRichard Tran Mills } 281d4002b98SHong Zhang 282d4002b98SHong Zhang for (row=0; row<m; row++) { 283d4002b98SHong Zhang ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 284d4002b98SHong Zhang ierr = MatSetValues(B,1,&row,ncols,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 285d4002b98SHong Zhang ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 286d4002b98SHong Zhang } 287d4002b98SHong Zhang ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 288d4002b98SHong Zhang ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 289d4002b98SHong Zhang B->rmap->bs = A->rmap->bs; 290d4002b98SHong Zhang 291d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 292d4002b98SHong Zhang ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 293d4002b98SHong Zhang } else { 294d4002b98SHong Zhang *newmat = B; 295d4002b98SHong Zhang } 296d4002b98SHong Zhang PetscFunctionReturn(0); 297d4002b98SHong Zhang } 298d4002b98SHong Zhang 299d4002b98SHong Zhang PetscErrorCode MatMult_SeqSELL(Mat A,Vec xx,Vec yy) 300d4002b98SHong Zhang { 301d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 302d4002b98SHong Zhang PetscScalar *y; 303d4002b98SHong Zhang const PetscScalar *x; 304d4002b98SHong Zhang const MatScalar *aval=a->val; 305d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 306d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 3077285fed1SHong Zhang PetscInt i,j; 308d4002b98SHong Zhang PetscErrorCode ierr; 309d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 310d4002b98SHong Zhang __m512d vec_x,vec_y,vec_vals; 311d4002b98SHong Zhang __m256i vec_idx; 312d4002b98SHong Zhang __mmask8 mask; 313d4002b98SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 314d4002b98SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 3155f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 316a48a6482SHong Zhang __m128i vec_idx; 317a48a6482SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 318a48a6482SHong Zhang MatScalar yval; 319a48a6482SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 32021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 321d4002b98SHong Zhang __m128d vec_x_tmp; 322d4002b98SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 323d4002b98SHong Zhang MatScalar yval; 324d4002b98SHong Zhang PetscInt r,rows_left,row,nnz_in_row; 325d4002b98SHong Zhang #else 326d4002b98SHong Zhang PetscScalar sum[8]; 327d4002b98SHong Zhang #endif 328d4002b98SHong Zhang 329d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 330d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 331d4002b98SHong Zhang #endif 332d4002b98SHong Zhang 333d4002b98SHong Zhang PetscFunctionBegin; 334d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 335d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 336d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 337d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 338d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 339d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 340d4002b98SHong Zhang 341d4002b98SHong Zhang vec_y = _mm512_setzero_pd(); 342d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd(); 343d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd(); 344d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd(); 345d4002b98SHong Zhang 34638efe8efSHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 347d4002b98SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 348d4002b98SHong Zhang case 3: 349d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 350d4002b98SHong Zhang acolidx += 8; aval += 8; 351d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 352d4002b98SHong Zhang acolidx += 8; aval += 8; 353d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 354d4002b98SHong Zhang acolidx += 8; aval += 8; 355d4002b98SHong Zhang j += 3; 356d4002b98SHong Zhang break; 357d4002b98SHong Zhang case 2: 358d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 359d4002b98SHong Zhang acolidx += 8; aval += 8; 360d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 361d4002b98SHong Zhang acolidx += 8; aval += 8; 362d4002b98SHong Zhang j += 2; 363d4002b98SHong Zhang break; 364d4002b98SHong Zhang case 1: 365d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 366d4002b98SHong Zhang acolidx += 8; aval += 8; 367d4002b98SHong Zhang j += 1; 368d4002b98SHong Zhang break; 369d4002b98SHong Zhang } 370d4002b98SHong Zhang #pragma novector 371d4002b98SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 372d4002b98SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 373d4002b98SHong Zhang acolidx += 8; aval += 8; 374d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 375d4002b98SHong Zhang acolidx += 8; aval += 8; 376d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 377d4002b98SHong Zhang acolidx += 8; aval += 8; 378d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 379d4002b98SHong Zhang acolidx += 8; aval += 8; 380d4002b98SHong Zhang } 381d4002b98SHong Zhang 382d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 383d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 384d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 385d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 386d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 387ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8*i],mask,vec_y); 388d4002b98SHong Zhang } else { 389ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8*i],vec_y); 390d4002b98SHong Zhang } 391d4002b98SHong Zhang } 3925f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 393a48a6482SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 394a48a6482SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 395a48a6482SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 396a48a6482SHong Zhang 397a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 398a48a6482SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 399a48a6482SHong Zhang rows_left = A->rmap->n - 8*i; 400a48a6482SHong Zhang for (r=0; r<rows_left; ++r) { 401a48a6482SHong Zhang yval = (MatScalar)0; 402a48a6482SHong Zhang row = 8*i + r; 403a48a6482SHong Zhang nnz_in_row = a->rlen[row]; 404a48a6482SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 405a48a6482SHong Zhang y[row] = yval; 406a48a6482SHong Zhang } 407a48a6482SHong Zhang break; 408a48a6482SHong Zhang } 409a48a6482SHong Zhang 410a48a6482SHong Zhang vec_y = _mm256_setzero_pd(); 411a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd(); 412a48a6482SHong Zhang 413a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 414a48a6482SHong Zhang #pragma novector 415a48a6482SHong Zhang #pragma unroll(2) 416a48a6482SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 417a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 418a48a6482SHong Zhang aval += 4; acolidx += 4; 419a48a6482SHong Zhang AVX2_Mult_Private(vec_idx,vec_x,vec_vals,vec_y2); 420a48a6482SHong Zhang aval += 4; acolidx += 4; 421a48a6482SHong Zhang } 422a48a6482SHong Zhang 423ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8,vec_y); 424ef588d5cSRichard Tran Mills _mm256_storeu_pd(y+i*8+4,vec_y2); 425a48a6482SHong Zhang } 42621cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 427d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 428d4002b98SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 429d4002b98SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 430d4002b98SHong Zhang 431d4002b98SHong Zhang vec_y = _mm256_setzero_pd(); 432d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd(); 433d4002b98SHong Zhang 434d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 435d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 436d4002b98SHong Zhang rows_left = A->rmap->n - 8*i; 437d4002b98SHong Zhang for (r=0; r<rows_left; ++r) { 438d4002b98SHong Zhang yval = (MatScalar)0; 439d4002b98SHong Zhang row = 8*i + r; 440d4002b98SHong Zhang nnz_in_row = a->rlen[row]; 441d4002b98SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j + r] * x[acolidx[8*j + r]]; 442d4002b98SHong Zhang y[row] = yval; 443d4002b98SHong Zhang } 444d4002b98SHong Zhang break; 445d4002b98SHong Zhang } 446d4002b98SHong Zhang 447d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 448a48a6482SHong Zhang #pragma novector 449a48a6482SHong Zhang #pragma unroll(2) 4507285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 451d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 452d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 453d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 454d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 455d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 456d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 457d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 458d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 459d4002b98SHong Zhang aval += 4; 460d4002b98SHong Zhang 461d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval); 462d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 463d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 464d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 465d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 466d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 467d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 468d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 469d4002b98SHong Zhang aval += 4; 470d4002b98SHong Zhang } 471d4002b98SHong Zhang 472d4002b98SHong Zhang _mm256_storeu_pd(y + i*8, vec_y); 473d4002b98SHong Zhang _mm256_storeu_pd(y + i*8 + 4, vec_y2); 474d4002b98SHong Zhang } 475d4002b98SHong Zhang #else 476d4002b98SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 477d4002b98SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 478d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 479d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 480d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 481d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 482d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 483d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 484d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 485d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 486d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 487d4002b98SHong Zhang } 488d4002b98SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { /* if last slice has padding rows */ 489d4002b98SHong Zhang for(j=0; j<(A->rmap->n & 0x07); j++) y[8*i+j] = sum[j]; 490d4002b98SHong Zhang } else { 4917285fed1SHong Zhang for(j=0; j<8; j++) y[8*i+j] = sum[j]; 492d4002b98SHong Zhang } 493d4002b98SHong Zhang } 494d4002b98SHong Zhang #endif 495d4002b98SHong Zhang 496d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz-a->nonzerorowcnt);CHKERRQ(ierr); /* theoretical minimal FLOPs */ 497d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 498d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 499d4002b98SHong Zhang PetscFunctionReturn(0); 500d4002b98SHong Zhang } 501d4002b98SHong Zhang 502d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h> 503d4002b98SHong Zhang PetscErrorCode MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz) 504d4002b98SHong Zhang { 505d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 506d4002b98SHong Zhang PetscScalar *y,*z; 507d4002b98SHong Zhang const PetscScalar *x; 508d4002b98SHong Zhang const MatScalar *aval=a->val; 509d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 510d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 511d4002b98SHong Zhang PetscInt i,j; 512d4002b98SHong Zhang PetscErrorCode ierr; 513d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5147285fed1SHong Zhang __m512d vec_x,vec_y,vec_vals; 515d4002b98SHong Zhang __m256i vec_idx; 516d4002b98SHong Zhang __mmask8 mask; 5177285fed1SHong Zhang __m512d vec_x2,vec_y2,vec_vals2,vec_x3,vec_y3,vec_vals3,vec_x4,vec_y4,vec_vals4; 5187285fed1SHong Zhang __m256i vec_idx2,vec_idx3,vec_idx4; 51921cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5207285fed1SHong Zhang __m128d vec_x_tmp; 5217285fed1SHong Zhang __m256d vec_x,vec_y,vec_y2,vec_vals; 5227285fed1SHong Zhang MatScalar yval; 5237285fed1SHong Zhang PetscInt r,row,nnz_in_row; 524d4002b98SHong Zhang #else 525d4002b98SHong Zhang PetscScalar sum[8]; 526d4002b98SHong Zhang #endif 527d4002b98SHong Zhang 528d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 529d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 530d4002b98SHong Zhang #endif 531d4002b98SHong Zhang 532d4002b98SHong Zhang PetscFunctionBegin; 533d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 534d4002b98SHong Zhang ierr = VecGetArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 535d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5367285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 5377285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5387285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5397285fed1SHong Zhang 540d4002b98SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 541d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8-(A->rmap->n & 0x07))); 542ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y,mask,&y[8*i]); 5437285fed1SHong Zhang } else { 544ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8*i]); 5457285fed1SHong Zhang } 5467285fed1SHong Zhang vec_y2 = _mm512_setzero_pd(); 5477285fed1SHong Zhang vec_y3 = _mm512_setzero_pd(); 5487285fed1SHong Zhang vec_y4 = _mm512_setzero_pd(); 5497285fed1SHong Zhang 5507285fed1SHong Zhang j = a->sliidx[i]>>3; /* 8 bytes are read at each time, corresponding to a slice columnn */ 5517285fed1SHong Zhang switch ((a->sliidx[i+1]-a->sliidx[i])/8 & 3) { 5527285fed1SHong Zhang case 3: 5537285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5547285fed1SHong Zhang acolidx += 8; aval += 8; 5557285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5567285fed1SHong Zhang acolidx += 8; aval += 8; 5577285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5587285fed1SHong Zhang acolidx += 8; aval += 8; 5597285fed1SHong Zhang j += 3; 5607285fed1SHong Zhang break; 5617285fed1SHong Zhang case 2: 5627285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5637285fed1SHong Zhang acolidx += 8; aval += 8; 5647285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5657285fed1SHong Zhang acolidx += 8; aval += 8; 5667285fed1SHong Zhang j += 2; 5677285fed1SHong Zhang break; 5687285fed1SHong Zhang case 1: 5697285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5707285fed1SHong Zhang acolidx += 8; aval += 8; 5717285fed1SHong Zhang j += 1; 5727285fed1SHong Zhang break; 5737285fed1SHong Zhang } 5747285fed1SHong Zhang #pragma novector 5757285fed1SHong Zhang for (; j<(a->sliidx[i+1]>>3); j+=4) { 5767285fed1SHong Zhang AVX512_Mult_Private(vec_idx,vec_x,vec_vals,vec_y); 5777285fed1SHong Zhang acolidx += 8; aval += 8; 5787285fed1SHong Zhang AVX512_Mult_Private(vec_idx2,vec_x2,vec_vals2,vec_y2); 5797285fed1SHong Zhang acolidx += 8; aval += 8; 5807285fed1SHong Zhang AVX512_Mult_Private(vec_idx3,vec_x3,vec_vals3,vec_y3); 5817285fed1SHong Zhang acolidx += 8; aval += 8; 5827285fed1SHong Zhang AVX512_Mult_Private(vec_idx4,vec_x4,vec_vals4,vec_y4); 5837285fed1SHong Zhang acolidx += 8; aval += 8; 5847285fed1SHong Zhang } 5857285fed1SHong Zhang 5867285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y2); 5877285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y3); 5887285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y,vec_y4); 5897285fed1SHong Zhang if (i == totalslices-1 && A->rmap->n & 0x07) { /* if last slice has padding rows */ 590ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8*i],mask,vec_y); 591d4002b98SHong Zhang } else { 592ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8*i],vec_y); 593d4002b98SHong Zhang } 5947285fed1SHong Zhang } 59521cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 5967285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over full slices */ 5977285fed1SHong Zhang PetscPrefetchBlock(acolidx,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5987285fed1SHong Zhang PetscPrefetchBlock(aval,a->sliidx[i+1]-a->sliidx[i],0,PETSC_PREFETCH_HINT_T0); 5997285fed1SHong Zhang 6007285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */ 6017285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6027285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6037285fed1SHong Zhang row = 8*i + r; 6047285fed1SHong Zhang yval = (MatScalar)0.0; 6057285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6067285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) yval += aval[8*j+r] * x[acolidx[8*j+r]]; 6077285fed1SHong Zhang z[row] = y[row] + yval; 6087285fed1SHong Zhang } 6097285fed1SHong Zhang break; 6107285fed1SHong Zhang } 6117285fed1SHong Zhang 6127285fed1SHong Zhang vec_y = _mm256_loadu_pd(y+8*i); 6137285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y+8*i+4); 6147285fed1SHong Zhang 6157285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */ 6167285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 6177285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6187285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6197285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6207285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6217285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6227285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6237285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6247285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y); 6257285fed1SHong Zhang aval += 4; 6267285fed1SHong Zhang 6277285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval); 6287285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6297285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6307285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,0); 6317285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++); 6327285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++); 6337285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x,vec_x_tmp,1); 6347285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x,vec_vals),vec_y2); 6357285fed1SHong Zhang aval += 4; 6367285fed1SHong Zhang } 6377285fed1SHong Zhang 6387285fed1SHong Zhang _mm256_storeu_pd(z+i*8,vec_y); 6397285fed1SHong Zhang _mm256_storeu_pd(z+i*8+4,vec_y2); 6407285fed1SHong Zhang } 641d4002b98SHong Zhang #else 6427285fed1SHong Zhang for (i=0; i<totalslices; i++) { /* loop over slices */ 6437285fed1SHong Zhang for (j=0; j<8; j++) sum[j] = 0.0; 644d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 645d4002b98SHong Zhang sum[0] += aval[j] * x[acolidx[j]]; 646d4002b98SHong Zhang sum[1] += aval[j+1] * x[acolidx[j+1]]; 647d4002b98SHong Zhang sum[2] += aval[j+2] * x[acolidx[j+2]]; 648d4002b98SHong Zhang sum[3] += aval[j+3] * x[acolidx[j+3]]; 649d4002b98SHong Zhang sum[4] += aval[j+4] * x[acolidx[j+4]]; 650d4002b98SHong Zhang sum[5] += aval[j+5] * x[acolidx[j+5]]; 651d4002b98SHong Zhang sum[6] += aval[j+6] * x[acolidx[j+6]]; 652d4002b98SHong Zhang sum[7] += aval[j+7] * x[acolidx[j+7]]; 653d4002b98SHong Zhang } 6547285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6557285fed1SHong Zhang for (j=0; j<(A->rmap->n & 0x07); j++) z[8*i+j] = y[8*i+j] + sum[j]; 656d4002b98SHong Zhang } else { 6577285fed1SHong Zhang for (j=0; j<8; j++) z[8*i+j] = y[8*i+j] + sum[j]; 6587285fed1SHong Zhang } 659d4002b98SHong Zhang } 660d4002b98SHong Zhang #endif 661d4002b98SHong Zhang 662d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 663d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 664d4002b98SHong Zhang ierr = VecRestoreArrayPair(yy,zz,&y,&z);CHKERRQ(ierr); 665d4002b98SHong Zhang PetscFunctionReturn(0); 666d4002b98SHong Zhang } 667d4002b98SHong Zhang 668d4002b98SHong Zhang PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy) 669d4002b98SHong Zhang { 670d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 671d4002b98SHong Zhang PetscScalar *y; 672d4002b98SHong Zhang const PetscScalar *x; 673d4002b98SHong Zhang const MatScalar *aval=a->val; 674d4002b98SHong Zhang const PetscInt *acolidx=a->colidx; 6757285fed1SHong Zhang PetscInt i,j,r,row,nnz_in_row,totalslices=a->totalslices; 676d4002b98SHong Zhang PetscErrorCode ierr; 677d4002b98SHong Zhang 678d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT) 679d4002b98SHong Zhang #pragma disjoint(*x,*y,*aval) 680d4002b98SHong Zhang #endif 681d4002b98SHong Zhang 682d4002b98SHong Zhang PetscFunctionBegin; 6839fc32365SStefano Zampini if (A->symmetric) { 6849fc32365SStefano Zampini ierr = MatMultAdd_SeqSELL(A,xx,zz,yy);CHKERRQ(ierr); 6859fc32365SStefano Zampini PetscFunctionReturn(0); 6869fc32365SStefano Zampini } 687d4002b98SHong Zhang if (zz != yy) { ierr = VecCopy(zz,yy);CHKERRQ(ierr); } 688d4002b98SHong Zhang ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 689d4002b98SHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 690d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 6917285fed1SHong Zhang if (i == totalslices-1 && (A->rmap->n & 0x07)) { 6927285fed1SHong Zhang for (r=0; r<(A->rmap->n & 0x07); ++r) { 6937285fed1SHong Zhang row = 8*i + r; 6947285fed1SHong Zhang nnz_in_row = a->rlen[row]; 6957285fed1SHong Zhang for (j=0; j<nnz_in_row; ++j) y[acolidx[8*j+r]] += aval[8*j+r] * x[row]; 6967285fed1SHong Zhang } 6977285fed1SHong Zhang break; 6987285fed1SHong Zhang } 6997285fed1SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j+=8) { 7007285fed1SHong Zhang y[acolidx[j]] += aval[j] * x[8*i]; 7017285fed1SHong Zhang y[acolidx[j+1]] += aval[j+1] * x[8*i+1]; 7027285fed1SHong Zhang y[acolidx[j+2]] += aval[j+2] * x[8*i+2]; 7037285fed1SHong Zhang y[acolidx[j+3]] += aval[j+3] * x[8*i+3]; 7047285fed1SHong Zhang y[acolidx[j+4]] += aval[j+4] * x[8*i+4]; 7057285fed1SHong Zhang y[acolidx[j+5]] += aval[j+5] * x[8*i+5]; 7067285fed1SHong Zhang y[acolidx[j+6]] += aval[j+6] * x[8*i+6]; 7077285fed1SHong Zhang y[acolidx[j+7]] += aval[j+7] * x[8*i+7]; 708d4002b98SHong Zhang } 709d4002b98SHong Zhang } 710d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->sliidx[a->totalslices]);CHKERRQ(ierr); 711d4002b98SHong Zhang ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 712d4002b98SHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 713d4002b98SHong Zhang PetscFunctionReturn(0); 714d4002b98SHong Zhang } 715d4002b98SHong Zhang 716d4002b98SHong Zhang PetscErrorCode MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy) 717d4002b98SHong Zhang { 718d4002b98SHong Zhang PetscErrorCode ierr; 719d4002b98SHong Zhang 720d4002b98SHong Zhang PetscFunctionBegin; 7219fc32365SStefano Zampini if (A->symmetric) { 7229fc32365SStefano Zampini ierr = MatMult_SeqSELL(A,xx,yy);CHKERRQ(ierr); 7239fc32365SStefano Zampini } else { 724d4002b98SHong Zhang ierr = VecSet(yy,0.0);CHKERRQ(ierr); 725d4002b98SHong Zhang ierr = MatMultTransposeAdd_SeqSELL(A,xx,yy,yy);CHKERRQ(ierr); 7269fc32365SStefano Zampini } 727d4002b98SHong Zhang PetscFunctionReturn(0); 728d4002b98SHong Zhang } 729d4002b98SHong Zhang 730d4002b98SHong Zhang /* 731d4002b98SHong Zhang Checks for missing diagonals 732d4002b98SHong Zhang */ 733d4002b98SHong Zhang PetscErrorCode MatMissingDiagonal_SeqSELL(Mat A,PetscBool *missing,PetscInt *d) 734d4002b98SHong Zhang { 735d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 736d4002b98SHong Zhang PetscInt *diag,i; 737*994fe344SLisandro Dalcin PetscErrorCode ierr; 738d4002b98SHong Zhang 739d4002b98SHong Zhang PetscFunctionBegin; 740d4002b98SHong Zhang *missing = PETSC_FALSE; 741d4002b98SHong Zhang if (A->rmap->n > 0 && !(a->colidx)) { 742d4002b98SHong Zhang *missing = PETSC_TRUE; 743d4002b98SHong Zhang if (d) *d = 0; 744*994fe344SLisandro Dalcin ierr = PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");CHKERRQ(ierr); 745d4002b98SHong Zhang } else { 746d4002b98SHong Zhang diag = a->diag; 747d4002b98SHong Zhang for (i=0; i<A->rmap->n; i++) { 748d4002b98SHong Zhang if (diag[i] == -1) { 749d4002b98SHong Zhang *missing = PETSC_TRUE; 750d4002b98SHong Zhang if (d) *d = i; 751*994fe344SLisandro Dalcin ierr = PetscInfo1(A,"Matrix is missing diagonal number %D\n",i);CHKERRQ(ierr); 752d4002b98SHong Zhang break; 753d4002b98SHong Zhang } 754d4002b98SHong Zhang } 755d4002b98SHong Zhang } 756d4002b98SHong Zhang PetscFunctionReturn(0); 757d4002b98SHong Zhang } 758d4002b98SHong Zhang 759d4002b98SHong Zhang PetscErrorCode MatMarkDiagonal_SeqSELL(Mat A) 760d4002b98SHong Zhang { 761d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 762d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 763d4002b98SHong Zhang PetscErrorCode ierr; 764d4002b98SHong Zhang 765d4002b98SHong Zhang PetscFunctionBegin; 766d4002b98SHong Zhang if (!a->diag) { 767d4002b98SHong Zhang ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 768d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 769d4002b98SHong Zhang a->free_diag = PETSC_TRUE; 770d4002b98SHong Zhang } 771d4002b98SHong Zhang for (i=0; i<m; i++) { /* loop over rows */ 772d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 773d4002b98SHong Zhang a->diag[i] = -1; 774d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 775d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 776d4002b98SHong Zhang a->diag[i] = shift+j*8; 777d4002b98SHong Zhang break; 778d4002b98SHong Zhang } 779d4002b98SHong Zhang } 780d4002b98SHong Zhang } 781d4002b98SHong Zhang PetscFunctionReturn(0); 782d4002b98SHong Zhang } 783d4002b98SHong Zhang 784d4002b98SHong Zhang /* 785d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways 786d4002b98SHong Zhang */ 787d4002b98SHong Zhang PetscErrorCode MatInvertDiagonal_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift) 788d4002b98SHong Zhang { 789d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*) A->data; 790d4002b98SHong Zhang PetscInt i,*diag,m = A->rmap->n; 791d4002b98SHong Zhang MatScalar *val = a->val; 792d4002b98SHong Zhang PetscScalar *idiag,*mdiag; 793d4002b98SHong Zhang PetscErrorCode ierr; 794d4002b98SHong Zhang 795d4002b98SHong Zhang PetscFunctionBegin; 796d4002b98SHong Zhang if (a->idiagvalid) PetscFunctionReturn(0); 797d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 798d4002b98SHong Zhang diag = a->diag; 799d4002b98SHong Zhang if (!a->idiag) { 800d4002b98SHong Zhang ierr = PetscMalloc3(m,&a->idiag,m,&a->mdiag,m,&a->ssor_work);CHKERRQ(ierr); 801d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)A, 3*m*sizeof(PetscScalar));CHKERRQ(ierr); 802d4002b98SHong Zhang val = a->val; 803d4002b98SHong Zhang } 804d4002b98SHong Zhang mdiag = a->mdiag; 805d4002b98SHong Zhang idiag = a->idiag; 806d4002b98SHong Zhang 807d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) { 808d4002b98SHong Zhang for (i=0; i<m; i++) { 809d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 810d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */ 811d4002b98SHong Zhang if (PetscRealPart(fshift)) { 812d4002b98SHong Zhang ierr = PetscInfo1(A,"Zero diagonal on row %D\n",i);CHKERRQ(ierr); 813d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 814d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0; 815d4002b98SHong Zhang A->factorerror_zeropivot_row = i; 816d4002b98SHong Zhang } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Zero diagonal on row %D",i); 817d4002b98SHong Zhang } 818d4002b98SHong Zhang idiag[i] = 1.0/val[diag[i]]; 819d4002b98SHong Zhang } 820d4002b98SHong Zhang ierr = PetscLogFlops(m);CHKERRQ(ierr); 821d4002b98SHong Zhang } else { 822d4002b98SHong Zhang for (i=0; i<m; i++) { 823d4002b98SHong Zhang mdiag[i] = val[diag[i]]; 824d4002b98SHong Zhang idiag[i] = omega/(fshift + val[diag[i]]); 825d4002b98SHong Zhang } 826d4002b98SHong Zhang ierr = PetscLogFlops(2.0*m);CHKERRQ(ierr); 827d4002b98SHong Zhang } 828d4002b98SHong Zhang a->idiagvalid = PETSC_TRUE; 829d4002b98SHong Zhang PetscFunctionReturn(0); 830d4002b98SHong Zhang } 831d4002b98SHong Zhang 832d4002b98SHong Zhang PetscErrorCode MatZeroEntries_SeqSELL(Mat A) 833d4002b98SHong Zhang { 834d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 835d4002b98SHong Zhang PetscErrorCode ierr; 836d4002b98SHong Zhang 837d4002b98SHong Zhang PetscFunctionBegin; 838d4002b98SHong Zhang ierr = PetscMemzero(a->val,(a->sliidx[a->totalslices])*sizeof(PetscScalar));CHKERRQ(ierr); 839d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 840d4002b98SHong Zhang PetscFunctionReturn(0); 841d4002b98SHong Zhang } 842d4002b98SHong Zhang 843d4002b98SHong Zhang PetscErrorCode MatDestroy_SeqSELL(Mat A) 844d4002b98SHong Zhang { 845d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 846d4002b98SHong Zhang PetscErrorCode ierr; 847d4002b98SHong Zhang 848d4002b98SHong Zhang PetscFunctionBegin; 849d4002b98SHong Zhang #if defined(PETSC_USE_LOG) 850d4002b98SHong Zhang PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->n,A->cmap->n,a->nz); 851d4002b98SHong Zhang #endif 852d4002b98SHong Zhang ierr = MatSeqXSELLFreeSELL(A,&a->val,&a->colidx);CHKERRQ(ierr); 853d4002b98SHong Zhang ierr = ISDestroy(&a->row);CHKERRQ(ierr); 854d4002b98SHong Zhang ierr = ISDestroy(&a->col);CHKERRQ(ierr); 855d4002b98SHong Zhang ierr = PetscFree(a->diag);CHKERRQ(ierr); 856d4002b98SHong Zhang ierr = PetscFree(a->rlen);CHKERRQ(ierr); 857d4002b98SHong Zhang ierr = PetscFree(a->sliidx);CHKERRQ(ierr); 858d4002b98SHong Zhang ierr = PetscFree3(a->idiag,a->mdiag,a->ssor_work);CHKERRQ(ierr); 859d4002b98SHong Zhang ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 860d4002b98SHong Zhang ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 861d4002b98SHong Zhang ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 8626108893eSStefano Zampini ierr = PetscFree2(a->getrowcols,a->getrowvals);CHKERRQ(ierr); 863d4002b98SHong Zhang 864d4002b98SHong Zhang ierr = PetscFree(A->data);CHKERRQ(ierr); 865d4002b98SHong Zhang 866d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 867d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 868d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 869d4002b98SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 870d4002b98SHong Zhang #endif 871d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqSELLSetPreallocation_C",NULL);CHKERRQ(ierr); 872d4002b98SHong Zhang PetscFunctionReturn(0); 873d4002b98SHong Zhang } 874d4002b98SHong Zhang 875d4002b98SHong Zhang PetscErrorCode MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg) 876d4002b98SHong Zhang { 877d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 878d4002b98SHong Zhang PetscErrorCode ierr; 879d4002b98SHong Zhang 880d4002b98SHong Zhang PetscFunctionBegin; 881d4002b98SHong Zhang switch (op) { 882d4002b98SHong Zhang case MAT_ROW_ORIENTED: 883d4002b98SHong Zhang a->roworiented = flg; 884d4002b98SHong Zhang break; 885d4002b98SHong Zhang case MAT_KEEP_NONZERO_PATTERN: 886d4002b98SHong Zhang a->keepnonzeropattern = flg; 887d4002b98SHong Zhang break; 888d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATIONS: 889d4002b98SHong Zhang a->nonew = (flg ? 0 : 1); 890d4002b98SHong Zhang break; 891d4002b98SHong Zhang case MAT_NEW_NONZERO_LOCATION_ERR: 892d4002b98SHong Zhang a->nonew = (flg ? -1 : 0); 893d4002b98SHong Zhang break; 894d4002b98SHong Zhang case MAT_NEW_NONZERO_ALLOCATION_ERR: 895d4002b98SHong Zhang a->nonew = (flg ? -2 : 0); 896d4002b98SHong Zhang break; 897d4002b98SHong Zhang case MAT_UNUSED_NONZERO_LOCATION_ERR: 898d4002b98SHong Zhang a->nounused = (flg ? -1 : 0); 899d4002b98SHong Zhang break; 900d4002b98SHong Zhang case MAT_NEW_DIAGONALS: 901d4002b98SHong Zhang case MAT_IGNORE_OFF_PROC_ENTRIES: 902d4002b98SHong Zhang case MAT_USE_HASH_TABLE: 903d4002b98SHong Zhang ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 904d4002b98SHong Zhang break; 905d4002b98SHong Zhang case MAT_SPD: 906d4002b98SHong Zhang case MAT_SYMMETRIC: 907d4002b98SHong Zhang case MAT_STRUCTURALLY_SYMMETRIC: 908d4002b98SHong Zhang case MAT_HERMITIAN: 909d4002b98SHong Zhang case MAT_SYMMETRY_ETERNAL: 910d4002b98SHong Zhang /* These options are handled directly by MatSetOption() */ 911d4002b98SHong Zhang break; 912d4002b98SHong Zhang default: 913d4002b98SHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 914d4002b98SHong Zhang } 915d4002b98SHong Zhang PetscFunctionReturn(0); 916d4002b98SHong Zhang } 917d4002b98SHong Zhang 918d4002b98SHong Zhang PetscErrorCode MatGetDiagonal_SeqSELL(Mat A,Vec v) 919d4002b98SHong Zhang { 920d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 921d4002b98SHong Zhang PetscInt i,j,n,shift; 922d4002b98SHong Zhang PetscScalar *x,zero=0.0; 923d4002b98SHong Zhang PetscErrorCode ierr; 924d4002b98SHong Zhang 925d4002b98SHong Zhang PetscFunctionBegin; 926d4002b98SHong Zhang ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 927d4002b98SHong Zhang if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 928d4002b98SHong Zhang 929d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) { 930d4002b98SHong Zhang PetscInt *diag=a->diag; 931d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 932d4002b98SHong Zhang for (i=0; i<n; i++) x[i] = 1.0/a->val[diag[i]]; 933d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 934d4002b98SHong Zhang PetscFunctionReturn(0); 935d4002b98SHong Zhang } 936d4002b98SHong Zhang 937d4002b98SHong Zhang ierr = VecSet(v,zero);CHKERRQ(ierr); 938d4002b98SHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 939d4002b98SHong Zhang for (i=0; i<n; i++) { /* loop over rows */ 940d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 941d4002b98SHong Zhang x[i] = 0; 942d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 943d4002b98SHong Zhang if (a->colidx[shift+j*8] == i) { 944d4002b98SHong Zhang x[i] = a->val[shift+j*8]; 945d4002b98SHong Zhang break; 946d4002b98SHong Zhang } 947d4002b98SHong Zhang } 948d4002b98SHong Zhang } 949d4002b98SHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 950d4002b98SHong Zhang PetscFunctionReturn(0); 951d4002b98SHong Zhang } 952d4002b98SHong Zhang 953d4002b98SHong Zhang PetscErrorCode MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr) 954d4002b98SHong Zhang { 955d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 956d4002b98SHong Zhang const PetscScalar *l,*r; 957d4002b98SHong Zhang PetscInt i,j,m,n,row; 958d4002b98SHong Zhang PetscErrorCode ierr; 959d4002b98SHong Zhang 960d4002b98SHong Zhang PetscFunctionBegin; 961d4002b98SHong Zhang if (ll) { 962d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine 963d4002b98SHong Zhang by MatDiagonalScale_MPISELL */ 964d4002b98SHong Zhang ierr = VecGetLocalSize(ll,&m);CHKERRQ(ierr); 965d4002b98SHong Zhang if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector wrong length"); 966d4002b98SHong Zhang ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 967d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 968d4002b98SHong Zhang for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 969d4002b98SHong Zhang a->val[j] *= l[8*i+row]; 970d4002b98SHong Zhang } 971d4002b98SHong Zhang } 972d4002b98SHong Zhang ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 973d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 974d4002b98SHong Zhang } 975d4002b98SHong Zhang if (rr) { 976d4002b98SHong Zhang ierr = VecGetLocalSize(rr,&n);CHKERRQ(ierr); 977d4002b98SHong Zhang if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vector wrong length"); 978d4002b98SHong Zhang ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 979d4002b98SHong Zhang for (i=0; i<a->totalslices; i++) { /* loop over slices */ 980d4002b98SHong Zhang for (j=a->sliidx[i]; j<a->sliidx[i+1]; j++) { 981d4002b98SHong Zhang a->val[j] *= r[a->colidx[j]]; 982d4002b98SHong Zhang } 983d4002b98SHong Zhang } 984d4002b98SHong Zhang ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 985d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 986d4002b98SHong Zhang } 987d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 988d4002b98SHong Zhang PetscFunctionReturn(0); 989d4002b98SHong Zhang } 990d4002b98SHong Zhang 991d4002b98SHong Zhang extern PetscErrorCode MatSetValues_SeqSELL(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 992d4002b98SHong Zhang 993d4002b98SHong Zhang PetscErrorCode MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 994d4002b98SHong Zhang { 995d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 996d4002b98SHong Zhang PetscInt *cp,i,k,low,high,t,row,col,l; 997d4002b98SHong Zhang PetscInt shift; 998d4002b98SHong Zhang MatScalar *vp; 999d4002b98SHong Zhang 1000d4002b98SHong Zhang PetscFunctionBegin; 100168aafef3SStefano Zampini for (k=0; k<m; k++) { /* loop over requested rows */ 1002d4002b98SHong Zhang row = im[k]; 1003d4002b98SHong Zhang if (row<0) continue; 1004d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1005d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 1006d4002b98SHong Zhang #endif 1007d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1008d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1009d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 101068aafef3SStefano Zampini for (l=0; l<n; l++) { /* loop over requested columns */ 1011d4002b98SHong Zhang col = in[l]; 1012d4002b98SHong Zhang if (col<0) continue; 1013d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1014d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: row %D max %D",col,A->cmap->n-1); 1015d4002b98SHong Zhang #endif 1016d4002b98SHong Zhang high = a->rlen[row]; low = 0; /* assume unsorted */ 1017d4002b98SHong Zhang while (high-low > 5) { 1018d4002b98SHong Zhang t = (low+high)/2; 1019d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1020d4002b98SHong Zhang else low = t; 1021d4002b98SHong Zhang } 1022d4002b98SHong Zhang for (i=low; i<high; i++) { 1023d4002b98SHong Zhang if (*(cp+8*i) > col) break; 1024d4002b98SHong Zhang if (*(cp+8*i) == col) { 1025d4002b98SHong Zhang *v++ = *(vp+8*i); 1026d4002b98SHong Zhang goto finished; 1027d4002b98SHong Zhang } 1028d4002b98SHong Zhang } 1029d4002b98SHong Zhang *v++ = 0.0; 1030d4002b98SHong Zhang finished:; 1031d4002b98SHong Zhang } 1032d4002b98SHong Zhang } 1033d4002b98SHong Zhang PetscFunctionReturn(0); 1034d4002b98SHong Zhang } 1035d4002b98SHong Zhang 1036d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer) 1037d4002b98SHong Zhang { 1038d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1039d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1040d4002b98SHong Zhang const char *name; 1041d4002b98SHong Zhang PetscViewerFormat format; 1042d4002b98SHong Zhang PetscErrorCode ierr; 1043d4002b98SHong Zhang 1044d4002b98SHong Zhang PetscFunctionBegin; 1045d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1046d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) { 1047d4002b98SHong Zhang PetscInt nofinalvalue = 0; 1048d4002b98SHong Zhang /* 1049d4002b98SHong Zhang if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) { 1050d4002b98SHong Zhang nofinalvalue = 1; 1051d4002b98SHong Zhang } 1052d4002b98SHong Zhang */ 1053d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1054d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",m,A->cmap->n);CHKERRQ(ierr); 1055d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%% Nonzeros = %D \n",a->nz);CHKERRQ(ierr); 1056d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1057d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,4);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1058d4002b98SHong Zhang #else 1059d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = zeros(%D,3);\n",a->nz+nofinalvalue);CHKERRQ(ierr); 1060d4002b98SHong Zhang #endif 1061d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"zzz = [\n");CHKERRQ(ierr); 1062d4002b98SHong Zhang 1063d4002b98SHong Zhang for (i=0; i<m; i++) { 1064d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1065d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1066d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1067d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1068d4002b98SHong Zhang #else 1069d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",i+1,a->colidx[shift+8*j]+1,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1070d4002b98SHong Zhang #endif 1071d4002b98SHong Zhang } 1072d4002b98SHong Zhang } 1073d4002b98SHong Zhang /* 1074d4002b98SHong Zhang if (nofinalvalue) { 1075d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1076d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e %18.16e\n",m,A->cmap->n,0.,0.);CHKERRQ(ierr); 1077d4002b98SHong Zhang #else 1078d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %18.16e\n",m,A->cmap->n,0.0);CHKERRQ(ierr); 1079d4002b98SHong Zhang #endif 1080d4002b98SHong Zhang } 1081d4002b98SHong Zhang */ 1082d4002b98SHong Zhang ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 1083d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"];\n %s = spconvert(zzz);\n",name);CHKERRQ(ierr); 1084d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1085d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) { 1086d4002b98SHong Zhang PetscFunctionReturn(0); 1087d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1088d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1089d4002b98SHong Zhang for (i=0; i<m; i++) { 1090d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1091d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1092d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1093d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1094d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1095d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1096d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0 && PetscRealPart(a->val[shift+8*j]) != 0.0) { 1097d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1098d4002b98SHong Zhang } else if (PetscRealPart(a->val[shift+8*j]) != 0.0) { 1099d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1100d4002b98SHong Zhang } 1101d4002b98SHong Zhang #else 1102d4002b98SHong Zhang if (a->val[shift+8*j] != 0.0) {ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr);} 1103d4002b98SHong Zhang #endif 1104d4002b98SHong Zhang } 1105d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1106d4002b98SHong Zhang } 1107d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1108d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) { 1109d4002b98SHong Zhang PetscInt cnt=0,jcnt; 1110d4002b98SHong Zhang PetscScalar value; 1111d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1112d4002b98SHong Zhang PetscBool realonly=PETSC_TRUE; 1113d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1114d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) { 1115d4002b98SHong Zhang realonly = PETSC_FALSE; 1116d4002b98SHong Zhang break; 1117d4002b98SHong Zhang } 1118d4002b98SHong Zhang } 1119d4002b98SHong Zhang #endif 1120d4002b98SHong Zhang 1121d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1122d4002b98SHong Zhang for (i=0; i<m; i++) { 1123d4002b98SHong Zhang jcnt = 0; 1124d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1125d4002b98SHong Zhang for (j=0; j<A->cmap->n; j++) { 1126d4002b98SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift+8*j]) { 1127d4002b98SHong Zhang value = a->val[cnt++]; 1128d4002b98SHong Zhang jcnt++; 1129d4002b98SHong Zhang } else { 1130d4002b98SHong Zhang value = 0.0; 1131d4002b98SHong Zhang } 1132d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1133d4002b98SHong Zhang if (realonly) { 1134d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)PetscRealPart(value));CHKERRQ(ierr); 1135d4002b98SHong Zhang } else { 1136d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e+%7.5e i ",(double)PetscRealPart(value),(double)PetscImaginaryPart(value));CHKERRQ(ierr); 1137d4002b98SHong Zhang } 1138d4002b98SHong Zhang #else 1139d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," %7.5e ",(double)value);CHKERRQ(ierr); 1140d4002b98SHong Zhang #endif 1141d4002b98SHong Zhang } 1142d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1143d4002b98SHong Zhang } 1144d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1145d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) { 1146d4002b98SHong Zhang PetscInt fshift=1; 1147d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1148d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1149d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate complex general\n");CHKERRQ(ierr); 1150d4002b98SHong Zhang #else 1151d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%%%%MatrixMarket matrix coordinate real general\n");CHKERRQ(ierr); 1152d4002b98SHong Zhang #endif 1153d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %D\n", m, A->cmap->n, a->nz);CHKERRQ(ierr); 1154d4002b98SHong Zhang for (i=0; i<m; i++) { 1155d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1156d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1157d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1158d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1159d4002b98SHong Zhang #else 1160d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"%D %D %g\n",i+fshift,a->colidx[shift+8*j]+fshift,(double)a->val[shift+8*j]);CHKERRQ(ierr); 1161d4002b98SHong Zhang #endif 1162d4002b98SHong Zhang } 1163d4002b98SHong Zhang } 1164d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 116568aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) { 116668aafef3SStefano Zampini for (i=0; i<a->totalslices; i++) { /* loop over slices */ 116768aafef3SStefano Zampini PetscInt row; 116868aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"slice %D: %D %D\n",i,a->sliidx[i],a->sliidx[i+1]);CHKERRQ(ierr); 116968aafef3SStefano Zampini for (j=a->sliidx[i],row=0; j<a->sliidx[i+1]; j++,row=((row+1)&0x07)) { 117068aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX) 117168aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) { 117268aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g + %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 117368aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 117468aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g - %g i\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]),-(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 117568aafef3SStefano Zampini } else { 117668aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g\n",8*i+row,a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 117768aafef3SStefano Zampini } 117868aafef3SStefano Zampini #else 117968aafef3SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D %D %g\n",8*i+row,a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 118068aafef3SStefano Zampini #endif 118168aafef3SStefano Zampini } 118268aafef3SStefano Zampini } 1183d4002b98SHong Zhang } else { 1184d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1185d4002b98SHong Zhang if (A->factortype) { 1186d4002b98SHong Zhang for (i=0; i<m; i++) { 1187d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1188d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1189d4002b98SHong Zhang /* L part */ 1190d4002b98SHong Zhang for (j=shift; j<a->diag[i]; j+=8) { 1191d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1192d4002b98SHong Zhang if (PetscImaginaryPart(a->val[shift+8*j]) > 0.0) { 1193d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1194d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[shift+8*j]) < 0.0) { 1195d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1196d4002b98SHong Zhang } else { 1197d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1198d4002b98SHong Zhang } 1199d4002b98SHong Zhang #else 1200d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1201d4002b98SHong Zhang #endif 1202d4002b98SHong Zhang } 1203d4002b98SHong Zhang /* diagonal */ 1204d4002b98SHong Zhang j = a->diag[i]; 1205d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1206d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1207d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)PetscImaginaryPart(1.0/a->val[j]));CHKERRQ(ierr); 1208d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1209d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]),(double)(-PetscImaginaryPart(1.0/a->val[j])));CHKERRQ(ierr); 1210d4002b98SHong Zhang } else { 1211d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(1.0/a->val[j]));CHKERRQ(ierr); 1212d4002b98SHong Zhang } 1213d4002b98SHong Zhang #else 1214d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)(1.0/a->val[j]));CHKERRQ(ierr); 1215d4002b98SHong Zhang #endif 1216d4002b98SHong Zhang 1217d4002b98SHong Zhang /* U part */ 1218d4002b98SHong Zhang for (j=a->diag[i]+1; j<shift+8*a->rlen[i]; j+=8) { 1219d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1220d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1221d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)PetscImaginaryPart(a->val[j]));CHKERRQ(ierr); 1222d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1223d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[j],(double)PetscRealPart(a->val[j]),(double)(-PetscImaginaryPart(a->val[j])));CHKERRQ(ierr); 1224d4002b98SHong Zhang } else { 1225d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)PetscRealPart(a->val[j]));CHKERRQ(ierr); 1226d4002b98SHong Zhang } 1227d4002b98SHong Zhang #else 1228d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[j],(double)a->val[j]);CHKERRQ(ierr); 1229d4002b98SHong Zhang #endif 1230d4002b98SHong Zhang } 1231d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1232d4002b98SHong Zhang } 1233d4002b98SHong Zhang } else { 1234d4002b98SHong Zhang for (i=0; i<m; i++) { 1235d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1236d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1237d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1238d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 1239d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) { 1240d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1241d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) { 1242d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i)",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]),(double)-PetscImaginaryPart(a->val[shift+8*j]));CHKERRQ(ierr); 1243d4002b98SHong Zhang } else { 1244d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)PetscRealPart(a->val[shift+8*j]));CHKERRQ(ierr); 1245d4002b98SHong Zhang } 1246d4002b98SHong Zhang #else 1247d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",a->colidx[shift+8*j],(double)a->val[shift+8*j]);CHKERRQ(ierr); 1248d4002b98SHong Zhang #endif 1249d4002b98SHong Zhang } 1250d4002b98SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1251d4002b98SHong Zhang } 1252d4002b98SHong Zhang } 1253d4002b98SHong Zhang ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1254d4002b98SHong Zhang } 1255d4002b98SHong Zhang ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1256d4002b98SHong Zhang PetscFunctionReturn(0); 1257d4002b98SHong Zhang } 1258d4002b98SHong Zhang 1259d4002b98SHong Zhang #include <petscdraw.h> 1260d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void *Aa) 1261d4002b98SHong Zhang { 1262d4002b98SHong Zhang Mat A=(Mat)Aa; 1263d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1264d4002b98SHong Zhang PetscInt i,j,m=A->rmap->n,shift; 1265d4002b98SHong Zhang int color; 1266d4002b98SHong Zhang PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1267d4002b98SHong Zhang PetscViewer viewer; 1268d4002b98SHong Zhang PetscViewerFormat format; 1269d4002b98SHong Zhang PetscErrorCode ierr; 1270d4002b98SHong Zhang 1271d4002b98SHong Zhang PetscFunctionBegin; 1272d4002b98SHong Zhang ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1273d4002b98SHong Zhang ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1274d4002b98SHong Zhang ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1275d4002b98SHong Zhang 1276d4002b98SHong Zhang /* loop over matrix elements drawing boxes */ 1277d4002b98SHong Zhang 1278d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1279d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1280d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */ 1281d4002b98SHong Zhang color = PETSC_DRAW_BLUE; 1282d4002b98SHong Zhang for (i=0; i<m; i++) { 1283d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1284d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1285d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1286d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1287d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) >= 0.) continue; 1288d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1289d4002b98SHong Zhang } 1290d4002b98SHong Zhang } 1291d4002b98SHong Zhang color = PETSC_DRAW_CYAN; 1292d4002b98SHong Zhang for (i=0; i<m; i++) { 1293d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1294d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1295d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1296d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1297d4002b98SHong Zhang if (a->val[shift+8*j] != 0.) continue; 1298d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1299d4002b98SHong Zhang } 1300d4002b98SHong Zhang } 1301d4002b98SHong Zhang color = PETSC_DRAW_RED; 1302d4002b98SHong Zhang for (i=0; i<m; i++) { 1303d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1304d4002b98SHong Zhang y_l = m - i - 1.0; y_r = y_l + 1.0; 1305d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1306d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; x_r = x_l + 1.0; 1307d4002b98SHong Zhang if (PetscRealPart(a->val[shift+8*j]) <= 0.) continue; 1308d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1309d4002b98SHong Zhang } 1310d4002b98SHong Zhang } 1311d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1312d4002b98SHong Zhang } else { 1313d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */ 1314d4002b98SHong Zhang /* first determine max of all nonzero values */ 1315d4002b98SHong Zhang PetscReal minv=0.0,maxv=0.0; 1316d4002b98SHong Zhang PetscInt count=0; 1317d4002b98SHong Zhang PetscDraw popup; 1318d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 1319d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]); 1320d4002b98SHong Zhang } 1321d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL; 1322d4002b98SHong Zhang ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1323d4002b98SHong Zhang ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1324d4002b98SHong Zhang 1325d4002b98SHong Zhang ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1326d4002b98SHong Zhang for (i=0; i<m; i++) { 1327d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); 1328d4002b98SHong Zhang y_l = m - i - 1.0; 1329d4002b98SHong Zhang y_r = y_l + 1.0; 1330d4002b98SHong Zhang for (j=0; j<a->rlen[i]; j++) { 1331d4002b98SHong Zhang x_l = a->colidx[shift+j*8]; 1332d4002b98SHong Zhang x_r = x_l + 1.0; 1333d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]),minv,maxv); 1334d4002b98SHong Zhang ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1335d4002b98SHong Zhang count++; 1336d4002b98SHong Zhang } 1337d4002b98SHong Zhang } 1338d4002b98SHong Zhang ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1339d4002b98SHong Zhang } 1340d4002b98SHong Zhang PetscFunctionReturn(0); 1341d4002b98SHong Zhang } 1342d4002b98SHong Zhang 1343d4002b98SHong Zhang #include <petscdraw.h> 1344d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL_Draw(Mat A,PetscViewer viewer) 1345d4002b98SHong Zhang { 1346d4002b98SHong Zhang PetscDraw draw; 1347d4002b98SHong Zhang PetscReal xr,yr,xl,yl,h,w; 1348d4002b98SHong Zhang PetscBool isnull; 1349d4002b98SHong Zhang PetscErrorCode ierr; 1350d4002b98SHong Zhang 1351d4002b98SHong Zhang PetscFunctionBegin; 1352d4002b98SHong Zhang ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1353d4002b98SHong Zhang ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1354d4002b98SHong Zhang if (isnull) PetscFunctionReturn(0); 1355d4002b98SHong Zhang 1356d4002b98SHong Zhang xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1357d4002b98SHong Zhang xr += w; yr += h; xl = -w; yl = -h; 1358d4002b98SHong Zhang ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1359d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1360d4002b98SHong Zhang ierr = PetscDrawZoom(draw,MatView_SeqSELL_Draw_Zoom,A);CHKERRQ(ierr); 1361d4002b98SHong Zhang ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1362d4002b98SHong Zhang ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1363d4002b98SHong Zhang PetscFunctionReturn(0); 1364d4002b98SHong Zhang } 1365d4002b98SHong Zhang 1366d4002b98SHong Zhang PetscErrorCode MatView_SeqSELL(Mat A,PetscViewer viewer) 1367d4002b98SHong Zhang { 1368d4002b98SHong Zhang PetscBool iascii,isbinary,isdraw; 1369d4002b98SHong Zhang PetscErrorCode ierr; 1370d4002b98SHong Zhang 1371d4002b98SHong Zhang PetscFunctionBegin; 1372d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1373d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1374d4002b98SHong Zhang ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1375d4002b98SHong Zhang if (iascii) { 1376d4002b98SHong Zhang ierr = MatView_SeqSELL_ASCII(A,viewer);CHKERRQ(ierr); 1377d4002b98SHong Zhang } else if (isbinary) { 1378d4002b98SHong Zhang /* ierr = MatView_SeqSELL_Binary(A,viewer);CHKERRQ(ierr); */ 1379d4002b98SHong Zhang } else if (isdraw) { 1380d4002b98SHong Zhang ierr = MatView_SeqSELL_Draw(A,viewer);CHKERRQ(ierr); 1381d4002b98SHong Zhang } 1382d4002b98SHong Zhang PetscFunctionReturn(0); 1383d4002b98SHong Zhang } 1384d4002b98SHong Zhang 1385d4002b98SHong Zhang PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode) 1386d4002b98SHong Zhang { 1387d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1388d4002b98SHong Zhang PetscInt i,shift,row_in_slice,row,nrow,*cp,lastcol,j,k; 1389d4002b98SHong Zhang MatScalar *vp; 1390d4002b98SHong Zhang PetscErrorCode ierr; 1391d4002b98SHong Zhang 1392d4002b98SHong Zhang PetscFunctionBegin; 1393d4002b98SHong Zhang if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1394d4002b98SHong Zhang /* To do: compress out the unused elements */ 1395d4002b98SHong Zhang ierr = MatMarkDiagonal_SeqSELL(A);CHKERRQ(ierr); 1396d4002b98SHong Zhang ierr = PetscInfo6(A,"Matrix size: %D X %D; storage space: %D allocated %D used (%D nonzeros+%D paddedzeros)\n",A->rmap->n,A->cmap->n,a->maxallocmat,a->sliidx[a->totalslices],a->nz,a->sliidx[a->totalslices]-a->nz);CHKERRQ(ierr); 1397d4002b98SHong Zhang ierr = PetscInfo1(A,"Number of mallocs during MatSetValues() is %D\n",a->reallocs);CHKERRQ(ierr); 1398d4002b98SHong Zhang ierr = PetscInfo1(A,"Maximum nonzeros in any row is %D\n",a->rlenmax);CHKERRQ(ierr); 1399d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */ 1400d4002b98SHong Zhang for (i=0; i<a->totalslices; ++i) { 1401d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */ 1402d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the column indices of the slice */ 1403d4002b98SHong Zhang vp = a->val+shift; /* pointer to the nonzero values of the slice */ 1404d4002b98SHong Zhang for (row_in_slice=0; row_in_slice<8; ++row_in_slice) { /* loop over rows in the slice */ 1405d4002b98SHong Zhang row = 8*i + row_in_slice; 1406d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */ 1407d4002b98SHong Zhang /* 1408d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication. 1409d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded. 1410d4002b98SHong Zhang */ 1411d4002b98SHong Zhang lastcol = 0; 1412d4002b98SHong Zhang if (nrow>0) { /* nonempty row */ 1413d4002b98SHong Zhang lastcol = cp[8*(nrow-1)+row_in_slice]; /* use the index from the last nonzero at current row */ 1414d4002b98SHong Zhang } else if (!row_in_slice) { /* first row of the currect slice is empty */ 1415d4002b98SHong Zhang for (j=1;j<8;j++) { 1416d4002b98SHong Zhang if (a->rlen[8*i+j]) { 1417d4002b98SHong Zhang lastcol = cp[j]; 1418d4002b98SHong Zhang break; 1419d4002b98SHong Zhang } 1420d4002b98SHong Zhang } 1421d4002b98SHong Zhang } else { 1422d4002b98SHong Zhang if (a->sliidx[i+1] != shift) lastcol = cp[row_in_slice-1]; /* use the index from the previous row */ 1423d4002b98SHong Zhang } 1424d4002b98SHong Zhang 1425d4002b98SHong Zhang for (k=nrow; k<(a->sliidx[i+1]-shift)/8; ++k) { 1426d4002b98SHong Zhang cp[8*k+row_in_slice] = lastcol; 1427d4002b98SHong Zhang vp[8*k+row_in_slice] = (MatScalar)0; 1428d4002b98SHong Zhang } 1429d4002b98SHong Zhang } 1430d4002b98SHong Zhang } 1431d4002b98SHong Zhang 1432d4002b98SHong Zhang A->info.mallocs += a->reallocs; 1433d4002b98SHong Zhang a->reallocs = 0; 1434d4002b98SHong Zhang 1435d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1436d4002b98SHong Zhang PetscFunctionReturn(0); 1437d4002b98SHong Zhang } 1438d4002b98SHong Zhang 1439d4002b98SHong Zhang PetscErrorCode MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo *info) 1440d4002b98SHong Zhang { 1441d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1442d4002b98SHong Zhang 1443d4002b98SHong Zhang PetscFunctionBegin; 1444d4002b98SHong Zhang info->block_size = 1.0; 1445d4002b98SHong Zhang info->nz_allocated = (double)a->maxallocmat; 1446d4002b98SHong Zhang info->nz_used = (double)a->sliidx[a->totalslices]; /* include padding zeros */ 1447d4002b98SHong Zhang info->nz_unneeded = (double)(a->maxallocmat-a->sliidx[a->totalslices]); 1448d4002b98SHong Zhang info->assemblies = (double)A->num_ass; 1449d4002b98SHong Zhang info->mallocs = (double)A->info.mallocs; 1450d4002b98SHong Zhang info->memory = ((PetscObject)A)->mem; 1451d4002b98SHong Zhang if (A->factortype) { 1452d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given; 1453d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed; 1454d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs; 1455d4002b98SHong Zhang } else { 1456d4002b98SHong Zhang info->fill_ratio_given = 0; 1457d4002b98SHong Zhang info->fill_ratio_needed = 0; 1458d4002b98SHong Zhang info->factor_mallocs = 0; 1459d4002b98SHong Zhang } 1460d4002b98SHong Zhang PetscFunctionReturn(0); 1461d4002b98SHong Zhang } 1462d4002b98SHong Zhang 1463d4002b98SHong Zhang PetscErrorCode MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1464d4002b98SHong Zhang { 1465d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1466d4002b98SHong Zhang PetscInt shift,i,k,l,low,high,t,ii,row,col,nrow; 1467d4002b98SHong Zhang PetscInt *cp,nonew=a->nonew,lastcol=-1; 1468d4002b98SHong Zhang MatScalar *vp,value; 1469d4002b98SHong Zhang PetscErrorCode ierr; 1470d4002b98SHong Zhang 1471d4002b98SHong Zhang PetscFunctionBegin; 1472d4002b98SHong Zhang for (k=0; k<m; k++) { /* loop over added rows */ 1473d4002b98SHong Zhang row = im[k]; 1474d4002b98SHong Zhang if (row < 0) continue; 1475d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1476d4002b98SHong Zhang if (row >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->n-1); 1477d4002b98SHong Zhang #endif 1478d4002b98SHong Zhang shift = a->sliidx[row>>3]+(row&0x07); /* starting index of the row */ 1479d4002b98SHong Zhang cp = a->colidx+shift; /* pointer to the row */ 1480d4002b98SHong Zhang vp = a->val+shift; /* pointer to the row */ 1481d4002b98SHong Zhang nrow = a->rlen[row]; 1482d4002b98SHong Zhang low = 0; 1483d4002b98SHong Zhang high = nrow; 1484d4002b98SHong Zhang 1485d4002b98SHong Zhang for (l=0; l<n; l++) { /* loop over added columns */ 1486d4002b98SHong Zhang col = in[l]; 1487d4002b98SHong Zhang if (col<0) continue; 1488d4002b98SHong Zhang #if defined(PETSC_USE_DEBUG) 1489d4002b98SHong Zhang if (col >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col too large: row %D max %D",col,A->cmap->n-1); 1490d4002b98SHong Zhang #endif 1491d4002b98SHong Zhang if (a->roworiented) { 1492d4002b98SHong Zhang value = v[l+k*n]; 1493d4002b98SHong Zhang } else { 1494d4002b98SHong Zhang value = v[k+l*m]; 1495d4002b98SHong Zhang } 1496d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue; 1497d4002b98SHong Zhang 1498d4002b98SHong Zhang /* search in this row for the specified colmun, i indicates the column to be set */ 1499d4002b98SHong Zhang if (col <= lastcol) low = 0; 1500d4002b98SHong Zhang else high = nrow; 1501d4002b98SHong Zhang lastcol = col; 1502d4002b98SHong Zhang while (high-low > 5) { 1503d4002b98SHong Zhang t = (low+high)/2; 1504d4002b98SHong Zhang if (*(cp+t*8) > col) high = t; 1505d4002b98SHong Zhang else low = t; 1506d4002b98SHong Zhang } 1507d4002b98SHong Zhang for (i=low; i<high; i++) { 1508d4002b98SHong Zhang if (*(cp+i*8) > col) break; 1509d4002b98SHong Zhang if (*(cp+i*8) == col) { 1510d4002b98SHong Zhang if (is == ADD_VALUES) *(vp+i*8) += value; 1511d4002b98SHong Zhang else *(vp+i*8) = value; 1512d4002b98SHong Zhang low = i + 1; 1513d4002b98SHong Zhang goto noinsert; 1514d4002b98SHong Zhang } 1515d4002b98SHong Zhang } 1516d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert; 1517d4002b98SHong Zhang if (nonew == 1) goto noinsert; 1518d4002b98SHong Zhang if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1519d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */ 1520d4002b98SHong Zhang MatSeqXSELLReallocateSELL(A,A->rmap->n,1,nrow,a->sliidx,row/8,row,col,a->colidx,a->val,cp,vp,nonew,MatScalar); 1521d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */ 1522d4002b98SHong Zhang for (ii=nrow-1; ii>=i; ii--) { 1523d4002b98SHong Zhang *(cp+(ii+1)*8) = *(cp+ii*8); 1524d4002b98SHong Zhang *(vp+(ii+1)*8) = *(vp+ii*8); 1525d4002b98SHong Zhang } 1526d4002b98SHong Zhang a->rlen[row]++; 1527d4002b98SHong Zhang *(cp+i*8) = col; 1528d4002b98SHong Zhang *(vp+i*8) = value; 1529d4002b98SHong Zhang a->nz++; 1530d4002b98SHong Zhang A->nonzerostate++; 1531d4002b98SHong Zhang low = i+1; high++; nrow++; 1532d4002b98SHong Zhang noinsert:; 1533d4002b98SHong Zhang } 1534d4002b98SHong Zhang a->rlen[row] = nrow; 1535d4002b98SHong Zhang } 1536d4002b98SHong Zhang PetscFunctionReturn(0); 1537d4002b98SHong Zhang } 1538d4002b98SHong Zhang 1539d4002b98SHong Zhang PetscErrorCode MatCopy_SeqSELL(Mat A,Mat B,MatStructure str) 1540d4002b98SHong Zhang { 1541d4002b98SHong Zhang PetscErrorCode ierr; 1542d4002b98SHong Zhang 1543d4002b98SHong Zhang PetscFunctionBegin; 1544d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 1545d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 1546d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1547d4002b98SHong Zhang Mat_SeqSELL *b=(Mat_SeqSELL*)B->data; 1548d4002b98SHong Zhang 1549d4002b98SHong Zhang if (a->sliidx[a->totalslices] != b->sliidx[b->totalslices]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 1550d4002b98SHong Zhang ierr = PetscMemcpy(b->val,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1551d4002b98SHong Zhang } else { 1552d4002b98SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1553d4002b98SHong Zhang } 1554d4002b98SHong Zhang PetscFunctionReturn(0); 1555d4002b98SHong Zhang } 1556d4002b98SHong Zhang 1557d4002b98SHong Zhang PetscErrorCode MatSetUp_SeqSELL(Mat A) 1558d4002b98SHong Zhang { 1559d4002b98SHong Zhang PetscErrorCode ierr; 1560d4002b98SHong Zhang 1561d4002b98SHong Zhang PetscFunctionBegin; 1562d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(A,PETSC_DEFAULT,0);CHKERRQ(ierr); 1563d4002b98SHong Zhang PetscFunctionReturn(0); 1564d4002b98SHong Zhang } 1565d4002b98SHong Zhang 1566d4002b98SHong Zhang PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar *array[]) 1567d4002b98SHong Zhang { 1568d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1569d4002b98SHong Zhang 1570d4002b98SHong Zhang PetscFunctionBegin; 1571d4002b98SHong Zhang *array = a->val; 1572d4002b98SHong Zhang PetscFunctionReturn(0); 1573d4002b98SHong Zhang } 1574d4002b98SHong Zhang 1575d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar *array[]) 1576d4002b98SHong Zhang { 1577d4002b98SHong Zhang PetscFunctionBegin; 1578d4002b98SHong Zhang PetscFunctionReturn(0); 1579d4002b98SHong Zhang } 1580d4002b98SHong Zhang 1581d4002b98SHong Zhang PetscErrorCode MatRealPart_SeqSELL(Mat A) 1582d4002b98SHong Zhang { 1583d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1584d4002b98SHong Zhang PetscInt i; 1585d4002b98SHong Zhang MatScalar *aval=a->val; 1586d4002b98SHong Zhang 1587d4002b98SHong Zhang PetscFunctionBegin; 1588d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i]=PetscRealPart(aval[i]); 1589d4002b98SHong Zhang PetscFunctionReturn(0); 1590d4002b98SHong Zhang } 1591d4002b98SHong Zhang 1592d4002b98SHong Zhang PetscErrorCode MatImaginaryPart_SeqSELL(Mat A) 1593d4002b98SHong Zhang { 1594d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1595d4002b98SHong Zhang PetscInt i; 1596d4002b98SHong Zhang MatScalar *aval=a->val; 1597d4002b98SHong Zhang PetscErrorCode ierr; 1598d4002b98SHong Zhang 1599d4002b98SHong Zhang PetscFunctionBegin; 1600d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) aval[i] = PetscImaginaryPart(aval[i]); 1601d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(A);CHKERRQ(ierr); 1602d4002b98SHong Zhang PetscFunctionReturn(0); 1603d4002b98SHong Zhang } 1604d4002b98SHong Zhang 1605d4002b98SHong Zhang PetscErrorCode MatScale_SeqSELL(Mat inA,PetscScalar alpha) 1606d4002b98SHong Zhang { 1607d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)inA->data; 1608d4002b98SHong Zhang MatScalar *aval=a->val; 1609d4002b98SHong Zhang PetscScalar oalpha=alpha; 1610d4002b98SHong Zhang PetscBLASInt one=1,size; 1611d4002b98SHong Zhang PetscErrorCode ierr; 1612d4002b98SHong Zhang 1613d4002b98SHong Zhang PetscFunctionBegin; 1614d4002b98SHong Zhang ierr = PetscBLASIntCast(a->sliidx[a->totalslices],&size);CHKERRQ(ierr); 1615d4002b98SHong Zhang PetscStackCallBLAS("BLASscal",BLASscal_(&size,&oalpha,aval,&one)); 1616d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1617d4002b98SHong Zhang ierr = MatSeqSELLInvalidateDiagonal(inA);CHKERRQ(ierr); 1618d4002b98SHong Zhang PetscFunctionReturn(0); 1619d4002b98SHong Zhang } 1620d4002b98SHong Zhang 1621d4002b98SHong Zhang PetscErrorCode MatShift_SeqSELL(Mat Y,PetscScalar a) 1622d4002b98SHong Zhang { 1623d4002b98SHong Zhang Mat_SeqSELL *y=(Mat_SeqSELL*)Y->data; 1624d4002b98SHong Zhang PetscErrorCode ierr; 1625d4002b98SHong Zhang 1626d4002b98SHong Zhang PetscFunctionBegin; 1627d4002b98SHong Zhang if (!Y->preallocated || !y->nz) { 1628d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation(Y,1,NULL);CHKERRQ(ierr); 1629d4002b98SHong Zhang } 1630d4002b98SHong Zhang ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 1631d4002b98SHong Zhang PetscFunctionReturn(0); 1632d4002b98SHong Zhang } 1633d4002b98SHong Zhang 1634d4002b98SHong Zhang PetscErrorCode MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1635d4002b98SHong Zhang { 1636d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 1637d4002b98SHong Zhang PetscScalar *x,sum,*t; 1638d4002b98SHong Zhang const MatScalar *idiag=0,*mdiag; 1639d4002b98SHong Zhang const PetscScalar *b,*xb; 1640d4002b98SHong Zhang PetscInt n,m=A->rmap->n,i,j,shift; 1641d4002b98SHong Zhang const PetscInt *diag; 1642d4002b98SHong Zhang PetscErrorCode ierr; 1643d4002b98SHong Zhang 1644d4002b98SHong Zhang PetscFunctionBegin; 1645d4002b98SHong Zhang its = its*lits; 1646d4002b98SHong Zhang 1647d4002b98SHong Zhang if (fshift != a->fshift || omega != a->omega) a->idiagvalid = PETSC_FALSE; /* must recompute idiag[] */ 1648d4002b98SHong Zhang if (!a->idiagvalid) {ierr = MatInvertDiagonal_SeqSELL(A,omega,fshift);CHKERRQ(ierr);} 1649d4002b98SHong Zhang a->fshift = fshift; 1650d4002b98SHong Zhang a->omega = omega; 1651d4002b98SHong Zhang 1652d4002b98SHong Zhang diag = a->diag; 1653d4002b98SHong Zhang t = a->ssor_work; 1654d4002b98SHong Zhang idiag = a->idiag; 1655d4002b98SHong Zhang mdiag = a->mdiag; 1656d4002b98SHong Zhang 1657d4002b98SHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1658d4002b98SHong Zhang ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 1659d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */ 1660d4002b98SHong Zhang if (flag == SOR_APPLY_UPPER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_UPPER is not implemented"); 1661d4002b98SHong Zhang if (flag == SOR_APPLY_LOWER) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"SOR_APPLY_LOWER is not implemented"); 1662d4002b98SHong Zhang if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 1663d4002b98SHong Zhang 1664d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) { 1665d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1666d4002b98SHong Zhang for (i=0; i<m; i++) { 1667d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1668d4002b98SHong Zhang sum = b[i]; 1669d4002b98SHong Zhang n = (diag[i]-shift)/8; 1670d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1671d4002b98SHong Zhang t[i] = sum; 1672d4002b98SHong Zhang x[i] = sum*idiag[i]; 1673d4002b98SHong Zhang } 1674d4002b98SHong Zhang xb = t; 1675d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1676d4002b98SHong Zhang } else xb = b; 1677d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1678d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1679d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1680d4002b98SHong Zhang sum = xb[i]; 1681d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1682d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1683d4002b98SHong Zhang if (xb == b) { 1684d4002b98SHong Zhang x[i] = sum*idiag[i]; 1685d4002b98SHong Zhang } else { 1686d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1687d4002b98SHong Zhang } 1688d4002b98SHong Zhang } 1689d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1690d4002b98SHong Zhang } 1691d4002b98SHong Zhang its--; 1692d4002b98SHong Zhang } 1693d4002b98SHong Zhang while (its--) { 1694d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) { 1695d4002b98SHong Zhang for (i=0; i<m; i++) { 1696d4002b98SHong Zhang /* lower */ 1697d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1698d4002b98SHong Zhang sum = b[i]; 1699d4002b98SHong Zhang n = (diag[i]-shift)/8; 1700d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1701d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */ 1702d4002b98SHong Zhang /* upper */ 1703d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1704d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1705d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1706d4002b98SHong Zhang } 1707d4002b98SHong Zhang xb = t; 1708d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1709d4002b98SHong Zhang } else xb = b; 1710d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1711d4002b98SHong Zhang for (i=m-1; i>=0; i--) { 1712d4002b98SHong Zhang shift = a->sliidx[i>>3]+(i&0x07); /* starting index of the row i */ 1713d4002b98SHong Zhang sum = xb[i]; 1714d4002b98SHong Zhang if (xb == b) { 1715d4002b98SHong Zhang /* whole matrix (no checkpointing available) */ 1716d4002b98SHong Zhang n = a->rlen[i]; 1717d4002b98SHong Zhang for (j=0; j<n; j++) sum -= a->val[shift+j*8]*x[a->colidx[shift+j*8]]; 1718d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+(sum+mdiag[i]*x[i])*idiag[i]; 1719d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */ 1720d4002b98SHong Zhang n = a->rlen[i]-(diag[i]-shift)/8-1; 1721d4002b98SHong Zhang for (j=1; j<=n; j++) sum -= a->val[diag[i]+j*8]*x[a->colidx[diag[i]+j*8]]; 1722d4002b98SHong Zhang x[i] = (1.-omega)*x[i]+sum*idiag[i]; /* omega in idiag */ 1723d4002b98SHong Zhang } 1724d4002b98SHong Zhang } 1725d4002b98SHong Zhang if (xb == b) { 1726d4002b98SHong Zhang ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 1727d4002b98SHong Zhang } else { 1728d4002b98SHong Zhang ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper */ 1729d4002b98SHong Zhang } 1730d4002b98SHong Zhang } 1731d4002b98SHong Zhang } 1732d4002b98SHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1733d4002b98SHong Zhang ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 1734d4002b98SHong Zhang PetscFunctionReturn(0); 1735d4002b98SHong Zhang } 1736d4002b98SHong Zhang 1737d4002b98SHong Zhang /* -------------------------------------------------------------------*/ 1738d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL, 17396108893eSStefano Zampini MatGetRow_SeqSELL, 17406108893eSStefano Zampini MatRestoreRow_SeqSELL, 1741d4002b98SHong Zhang MatMult_SeqSELL, 1742d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL, 1743d4002b98SHong Zhang MatMultTranspose_SeqSELL, 1744d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL, 1745d4002b98SHong Zhang 0, 1746d4002b98SHong Zhang 0, 1747d4002b98SHong Zhang 0, 1748d4002b98SHong Zhang /* 10*/ 0, 1749d4002b98SHong Zhang 0, 1750d4002b98SHong Zhang 0, 1751d4002b98SHong Zhang MatSOR_SeqSELL, 1752d4002b98SHong Zhang 0, 1753d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL, 1754d4002b98SHong Zhang MatEqual_SeqSELL, 1755d4002b98SHong Zhang MatGetDiagonal_SeqSELL, 1756d4002b98SHong Zhang MatDiagonalScale_SeqSELL, 1757d4002b98SHong Zhang 0, 1758d4002b98SHong Zhang /* 20*/ 0, 1759d4002b98SHong Zhang MatAssemblyEnd_SeqSELL, 1760d4002b98SHong Zhang MatSetOption_SeqSELL, 1761d4002b98SHong Zhang MatZeroEntries_SeqSELL, 1762d4002b98SHong Zhang /* 24*/ 0, 1763d4002b98SHong Zhang 0, 1764d4002b98SHong Zhang 0, 1765d4002b98SHong Zhang 0, 1766d4002b98SHong Zhang 0, 1767d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL, 1768d4002b98SHong Zhang 0, 1769d4002b98SHong Zhang 0, 1770d4002b98SHong Zhang 0, 1771d4002b98SHong Zhang 0, 1772d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL, 1773d4002b98SHong Zhang 0, 1774d4002b98SHong Zhang 0, 1775d4002b98SHong Zhang 0, 1776d4002b98SHong Zhang 0, 1777d4002b98SHong Zhang /* 39*/ 0, 1778d4002b98SHong Zhang 0, 1779d4002b98SHong Zhang 0, 1780d4002b98SHong Zhang MatGetValues_SeqSELL, 1781d4002b98SHong Zhang MatCopy_SeqSELL, 1782d4002b98SHong Zhang /* 44*/ 0, 1783d4002b98SHong Zhang MatScale_SeqSELL, 1784d4002b98SHong Zhang MatShift_SeqSELL, 1785d4002b98SHong Zhang 0, 1786d4002b98SHong Zhang 0, 1787d4002b98SHong Zhang /* 49*/ 0, 1788d4002b98SHong Zhang 0, 1789d4002b98SHong Zhang 0, 1790d4002b98SHong Zhang 0, 1791d4002b98SHong Zhang 0, 1792d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 1793d4002b98SHong Zhang 0, 1794d4002b98SHong Zhang 0, 1795d4002b98SHong Zhang 0, 1796d4002b98SHong Zhang 0, 1797d4002b98SHong Zhang /* 59*/ 0, 1798d4002b98SHong Zhang MatDestroy_SeqSELL, 1799d4002b98SHong Zhang MatView_SeqSELL, 1800d4002b98SHong Zhang 0, 1801d4002b98SHong Zhang 0, 1802d4002b98SHong Zhang /* 64*/ 0, 1803d4002b98SHong Zhang 0, 1804d4002b98SHong Zhang 0, 1805d4002b98SHong Zhang 0, 1806d4002b98SHong Zhang 0, 1807d4002b98SHong Zhang /* 69*/ 0, 1808d4002b98SHong Zhang 0, 1809d4002b98SHong Zhang 0, 1810d4002b98SHong Zhang 0, 1811d4002b98SHong Zhang 0, 1812d4002b98SHong Zhang /* 74*/ 0, 1813d4002b98SHong Zhang MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */ 1814d4002b98SHong Zhang 0, 1815d4002b98SHong Zhang 0, 1816d4002b98SHong Zhang 0, 1817d4002b98SHong Zhang /* 79*/ 0, 1818d4002b98SHong Zhang 0, 1819d4002b98SHong Zhang 0, 1820d4002b98SHong Zhang 0, 1821d4002b98SHong Zhang 0, 1822d4002b98SHong Zhang /* 84*/ 0, 1823d4002b98SHong Zhang 0, 1824d4002b98SHong Zhang 0, 1825d4002b98SHong Zhang 0, 1826d4002b98SHong Zhang 0, 1827d4002b98SHong Zhang /* 89*/ 0, 1828d4002b98SHong Zhang 0, 1829d4002b98SHong Zhang 0, 1830d4002b98SHong Zhang 0, 1831d4002b98SHong Zhang 0, 1832d4002b98SHong Zhang /* 94*/ 0, 1833d4002b98SHong Zhang 0, 1834d4002b98SHong Zhang 0, 1835d4002b98SHong Zhang 0, 1836d4002b98SHong Zhang 0, 1837d4002b98SHong Zhang /* 99*/ 0, 1838d4002b98SHong Zhang 0, 1839d4002b98SHong Zhang 0, 1840d4002b98SHong Zhang MatConjugate_SeqSELL, 1841d4002b98SHong Zhang 0, 1842d4002b98SHong Zhang /*104*/ 0, 1843d4002b98SHong Zhang 0, 1844d4002b98SHong Zhang 0, 1845d4002b98SHong Zhang 0, 1846d4002b98SHong Zhang 0, 1847d4002b98SHong Zhang /*109*/ 0, 1848d4002b98SHong Zhang 0, 1849d4002b98SHong Zhang 0, 1850d4002b98SHong Zhang 0, 1851d4002b98SHong Zhang MatMissingDiagonal_SeqSELL, 1852d4002b98SHong Zhang /*114*/ 0, 1853d4002b98SHong Zhang 0, 1854d4002b98SHong Zhang 0, 1855d4002b98SHong Zhang 0, 1856d4002b98SHong Zhang 0, 1857d4002b98SHong Zhang /*119*/ 0, 1858d4002b98SHong Zhang 0, 1859d4002b98SHong Zhang 0, 1860d4002b98SHong Zhang 0, 1861d4002b98SHong Zhang 0, 1862d4002b98SHong Zhang /*124*/ 0, 1863d4002b98SHong Zhang 0, 1864d4002b98SHong Zhang 0, 1865d4002b98SHong Zhang 0, 1866d4002b98SHong Zhang 0, 1867d4002b98SHong Zhang /*129*/ 0, 1868d4002b98SHong Zhang 0, 1869d4002b98SHong Zhang 0, 1870d4002b98SHong Zhang 0, 1871d4002b98SHong Zhang 0, 1872d4002b98SHong Zhang /*134*/ 0, 1873d4002b98SHong Zhang 0, 1874d4002b98SHong Zhang 0, 1875d4002b98SHong Zhang 0, 1876d4002b98SHong Zhang 0, 1877d4002b98SHong Zhang /*139*/ 0, 1878d4002b98SHong Zhang 0, 1879d4002b98SHong Zhang 0, 1880d4002b98SHong Zhang MatFDColoringSetUp_SeqXAIJ, 1881d4002b98SHong Zhang 0, 1882d4002b98SHong Zhang /*144*/0 1883d4002b98SHong Zhang }; 1884d4002b98SHong Zhang 1885d4002b98SHong Zhang PetscErrorCode MatStoreValues_SeqSELL(Mat mat) 1886d4002b98SHong Zhang { 1887d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1888d4002b98SHong Zhang PetscErrorCode ierr; 1889d4002b98SHong Zhang 1890d4002b98SHong Zhang PetscFunctionBegin; 1891d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1892d4002b98SHong Zhang 1893d4002b98SHong Zhang /* allocate space for values if not already there */ 1894d4002b98SHong Zhang if (!a->saved_values) { 1895d4002b98SHong Zhang ierr = PetscMalloc1(a->sliidx[a->totalslices]+1,&a->saved_values);CHKERRQ(ierr); 1896d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)mat,(a->sliidx[a->totalslices]+1)*sizeof(PetscScalar));CHKERRQ(ierr); 1897d4002b98SHong Zhang } 1898d4002b98SHong Zhang 1899d4002b98SHong Zhang /* copy values over */ 1900d4002b98SHong Zhang ierr = PetscMemcpy(a->saved_values,a->val,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1901d4002b98SHong Zhang PetscFunctionReturn(0); 1902d4002b98SHong Zhang } 1903d4002b98SHong Zhang 1904d4002b98SHong Zhang PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat) 1905d4002b98SHong Zhang { 1906d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)mat->data; 1907d4002b98SHong Zhang PetscErrorCode ierr; 1908d4002b98SHong Zhang 1909d4002b98SHong Zhang PetscFunctionBegin; 1910d4002b98SHong Zhang if (!a->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 1911d4002b98SHong Zhang if (!a->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 1912d4002b98SHong Zhang /* copy values over */ 1913d4002b98SHong Zhang ierr = PetscMemcpy(a->val,a->saved_values,a->sliidx[a->totalslices]*sizeof(PetscScalar));CHKERRQ(ierr); 1914d4002b98SHong Zhang PetscFunctionReturn(0); 1915d4002b98SHong Zhang } 1916d4002b98SHong Zhang 1917d4002b98SHong Zhang /*@C 1918d4002b98SHong Zhang MatSeqSELLRestoreArray - returns access to the array where the data for a MATSEQSELL matrix is stored obtained by MatSeqSELLGetArray() 1919d4002b98SHong Zhang 1920d4002b98SHong Zhang Not Collective 1921d4002b98SHong Zhang 1922d4002b98SHong Zhang Input Parameters: 1923d4002b98SHong Zhang . mat - a MATSEQSELL matrix 1924d4002b98SHong Zhang . array - pointer to the data 1925d4002b98SHong Zhang 1926d4002b98SHong Zhang Level: intermediate 1927d4002b98SHong Zhang 1928d4002b98SHong Zhang .seealso: MatSeqSELLGetArray(), MatSeqSELLRestoreArrayF90() 1929d4002b98SHong Zhang @*/ 1930d4002b98SHong Zhang PetscErrorCode MatSeqSELLRestoreArray(Mat A,PetscScalar **array) 1931d4002b98SHong Zhang { 1932d4002b98SHong Zhang PetscErrorCode ierr; 1933d4002b98SHong Zhang 1934d4002b98SHong Zhang PetscFunctionBegin; 1935d4002b98SHong Zhang ierr = PetscUseMethod(A,"MatSeqSELLRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 1936d4002b98SHong Zhang PetscFunctionReturn(0); 1937d4002b98SHong Zhang } 1938d4002b98SHong Zhang 1939d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B) 1940d4002b98SHong Zhang { 1941d4002b98SHong Zhang Mat_SeqSELL *b; 1942d4002b98SHong Zhang PetscMPIInt size; 1943d4002b98SHong Zhang PetscErrorCode ierr; 1944d4002b98SHong Zhang 1945d4002b98SHong Zhang PetscFunctionBegin; 1946d4002b98SHong Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 1947d4002b98SHong Zhang if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Comm must be of size 1"); 1948d4002b98SHong Zhang 1949d4002b98SHong Zhang ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 1950d4002b98SHong Zhang 1951d4002b98SHong Zhang B->data = (void*)b; 1952d4002b98SHong Zhang 1953d4002b98SHong Zhang ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1954d4002b98SHong Zhang 1955d4002b98SHong Zhang b->row = 0; 1956d4002b98SHong Zhang b->col = 0; 1957d4002b98SHong Zhang b->icol = 0; 1958d4002b98SHong Zhang b->reallocs = 0; 1959d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE; 1960d4002b98SHong Zhang b->roworiented = PETSC_TRUE; 1961d4002b98SHong Zhang b->nonew = 0; 1962d4002b98SHong Zhang b->diag = 0; 1963d4002b98SHong Zhang b->solve_work = 0; 1964d4002b98SHong Zhang B->spptr = 0; 1965d4002b98SHong Zhang b->saved_values = 0; 1966d4002b98SHong Zhang b->idiag = 0; 1967d4002b98SHong Zhang b->mdiag = 0; 1968d4002b98SHong Zhang b->ssor_work = 0; 1969d4002b98SHong Zhang b->omega = 1.0; 1970d4002b98SHong Zhang b->fshift = 0.0; 1971d4002b98SHong Zhang b->idiagvalid = PETSC_FALSE; 1972d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE; 1973d4002b98SHong Zhang 1974d4002b98SHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQSELL);CHKERRQ(ierr); 1975d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLGetArray_C",MatSeqSELLGetArray_SeqSELL);CHKERRQ(ierr); 1976d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLRestoreArray_C",MatSeqSELLRestoreArray_SeqSELL);CHKERRQ(ierr); 1977d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqSELL);CHKERRQ(ierr); 1978d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqSELL);CHKERRQ(ierr); 1979d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqSELLSetPreallocation_C",MatSeqSELLSetPreallocation_SeqSELL);CHKERRQ(ierr); 1980d4002b98SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqsell_seqaij_C",MatConvert_SeqSELL_SeqAIJ);CHKERRQ(ierr); 1981d4002b98SHong Zhang PetscFunctionReturn(0); 1982d4002b98SHong Zhang } 1983d4002b98SHong Zhang 1984d4002b98SHong Zhang /* 1985d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B 1986d4002b98SHong Zhang */ 1987d4002b98SHong Zhang PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 1988d4002b98SHong Zhang { 1989d4002b98SHong Zhang Mat_SeqSELL *c,*a=(Mat_SeqSELL*)A->data; 1990d4002b98SHong Zhang PetscInt i,m=A->rmap->n; 1991d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 1992d4002b98SHong Zhang PetscErrorCode ierr; 1993d4002b98SHong Zhang 1994d4002b98SHong Zhang PetscFunctionBegin; 1995d4002b98SHong Zhang c = (Mat_SeqSELL*)C->data; 1996d4002b98SHong Zhang 1997d4002b98SHong Zhang C->factortype = A->factortype; 1998d4002b98SHong Zhang c->row = 0; 1999d4002b98SHong Zhang c->col = 0; 2000d4002b98SHong Zhang c->icol = 0; 2001d4002b98SHong Zhang c->reallocs = 0; 2002d4002b98SHong Zhang 2003d4002b98SHong Zhang C->assembled = PETSC_TRUE; 2004d4002b98SHong Zhang 2005d4002b98SHong Zhang ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 2006d4002b98SHong Zhang ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 2007d4002b98SHong Zhang 2008d4002b98SHong Zhang ierr = PetscMalloc1(8*totalslices,&c->rlen);CHKERRQ(ierr); 2009d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2010d4002b98SHong Zhang ierr = PetscMalloc1(totalslices+1,&c->sliidx);CHKERRQ(ierr); 2011d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C, (totalslices+1)*sizeof(PetscInt));CHKERRQ(ierr); 2012d4002b98SHong Zhang 2013d4002b98SHong Zhang for (i=0; i<m; i++) c->rlen[i] = a->rlen[i]; 2014d4002b98SHong Zhang for (i=0; i<totalslices+1; i++) c->sliidx[i] = a->sliidx[i]; 2015d4002b98SHong Zhang 2016d4002b98SHong Zhang /* allocate the matrix space */ 2017d4002b98SHong Zhang if (mallocmatspace) { 2018d4002b98SHong Zhang ierr = PetscMalloc2(a->maxallocmat,&c->val,a->maxallocmat,&c->colidx);CHKERRQ(ierr); 2019d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,a->maxallocmat*(sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2020d4002b98SHong Zhang 2021d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE; 2022d4002b98SHong Zhang 2023d4002b98SHong Zhang if (m > 0) { 2024d4002b98SHong Zhang ierr = PetscMemcpy(c->colidx,a->colidx,(a->maxallocmat)*sizeof(PetscInt));CHKERRQ(ierr); 2025d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) { 2026d4002b98SHong Zhang ierr = PetscMemcpy(c->val,a->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 2027d4002b98SHong Zhang } else { 2028d4002b98SHong Zhang ierr = PetscMemzero(c->val,a->maxallocmat*sizeof(PetscScalar));CHKERRQ(ierr); 2029d4002b98SHong Zhang } 2030d4002b98SHong Zhang } 2031d4002b98SHong Zhang } 2032d4002b98SHong Zhang 2033d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries; 2034d4002b98SHong Zhang c->roworiented = a->roworiented; 2035d4002b98SHong Zhang c->nonew = a->nonew; 2036d4002b98SHong Zhang if (a->diag) { 2037d4002b98SHong Zhang ierr = PetscMalloc1(m,&c->diag);CHKERRQ(ierr); 2038d4002b98SHong Zhang ierr = PetscLogObjectMemory((PetscObject)C,m*sizeof(PetscInt));CHKERRQ(ierr); 2039d4002b98SHong Zhang for (i=0; i<m; i++) { 2040d4002b98SHong Zhang c->diag[i] = a->diag[i]; 2041d4002b98SHong Zhang } 2042d4002b98SHong Zhang } else c->diag = 0; 2043d4002b98SHong Zhang 2044d4002b98SHong Zhang c->solve_work = 0; 2045d4002b98SHong Zhang c->saved_values = 0; 2046d4002b98SHong Zhang c->idiag = 0; 2047d4002b98SHong Zhang c->ssor_work = 0; 2048d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern; 2049d4002b98SHong Zhang c->free_val = PETSC_TRUE; 2050d4002b98SHong Zhang c->free_colidx = PETSC_TRUE; 2051d4002b98SHong Zhang 2052d4002b98SHong Zhang c->maxallocmat = a->maxallocmat; 2053d4002b98SHong Zhang c->maxallocrow = a->maxallocrow; 2054d4002b98SHong Zhang c->rlenmax = a->rlenmax; 2055d4002b98SHong Zhang c->nz = a->nz; 2056d4002b98SHong Zhang C->preallocated = PETSC_TRUE; 2057d4002b98SHong Zhang 2058d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt; 2059d4002b98SHong Zhang C->nonzerostate = A->nonzerostate; 2060d4002b98SHong Zhang 2061d4002b98SHong Zhang ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 2062d4002b98SHong Zhang PetscFunctionReturn(0); 2063d4002b98SHong Zhang } 2064d4002b98SHong Zhang 2065d4002b98SHong Zhang PetscErrorCode MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat *B) 2066d4002b98SHong Zhang { 2067d4002b98SHong Zhang PetscErrorCode ierr; 2068d4002b98SHong Zhang 2069d4002b98SHong Zhang PetscFunctionBegin; 2070d4002b98SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 2071d4002b98SHong Zhang ierr = MatSetSizes(*B,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 2072d4002b98SHong Zhang if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) { 2073d4002b98SHong Zhang ierr = MatSetBlockSizesFromMats(*B,A,A);CHKERRQ(ierr); 2074d4002b98SHong Zhang } 2075d4002b98SHong Zhang ierr = MatSetType(*B,((PetscObject)A)->type_name);CHKERRQ(ierr); 2076d4002b98SHong Zhang ierr = MatDuplicateNoCreate_SeqSELL(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 2077d4002b98SHong Zhang PetscFunctionReturn(0); 2078d4002b98SHong Zhang } 2079d4002b98SHong Zhang 2080d4002b98SHong Zhang /*@C 2081d4002b98SHong Zhang MatCreateSeqSELL - Creates a sparse matrix in SELL format. 2082d4002b98SHong Zhang 2083d4002b98SHong Zhang Collective on MPI_Comm 2084d4002b98SHong Zhang 2085d4002b98SHong Zhang Input Parameters: 2086d4002b98SHong Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 2087d4002b98SHong Zhang . m - number of rows 2088d4002b98SHong Zhang . n - number of columns 2089d4002b98SHong Zhang . rlenmax - maximum number of nonzeros in a row 2090d4002b98SHong Zhang - rlen - array containing the number of nonzeros in the various rows 2091d4002b98SHong Zhang (possibly different for each row) or NULL 2092d4002b98SHong Zhang 2093d4002b98SHong Zhang Output Parameter: 2094d4002b98SHong Zhang . A - the matrix 2095d4002b98SHong Zhang 2096d4002b98SHong Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2097d4002b98SHong Zhang MatXXXXSetPreallocation() paradgm instead of this routine directly. 2098d4002b98SHong Zhang [MatXXXXSetPreallocation() is, for example, MatSeqSELLSetPreallocation] 2099d4002b98SHong Zhang 2100d4002b98SHong Zhang Notes: 2101d4002b98SHong Zhang If nnz is given then nz is ignored 2102d4002b98SHong Zhang 2103d4002b98SHong Zhang Specify the preallocated storage with either rlenmax or rlen (not both). 2104d4002b98SHong Zhang Set rlenmax=PETSC_DEFAULT and rlen=NULL for PETSc to control dynamic memory 2105d4002b98SHong Zhang allocation. For large problems you MUST preallocate memory or you 2106d4002b98SHong Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 2107d4002b98SHong Zhang 2108d4002b98SHong Zhang Level: intermediate 2109d4002b98SHong Zhang 2110d4002b98SHong Zhang .seealso: MatCreate(), MatCreateSELL(), MatSetValues(), MatCreateSeqSELLWithArrays() 2111d4002b98SHong Zhang 2112d4002b98SHong Zhang @*/ 2113d4002b98SHong Zhang PetscErrorCode MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt maxallocrow,const PetscInt rlen[],Mat *A) 2114d4002b98SHong Zhang { 2115d4002b98SHong Zhang PetscErrorCode ierr; 2116d4002b98SHong Zhang 2117d4002b98SHong Zhang PetscFunctionBegin; 2118d4002b98SHong Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 2119d4002b98SHong Zhang ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2120d4002b98SHong Zhang ierr = MatSetType(*A,MATSEQSELL);CHKERRQ(ierr); 2121d4002b98SHong Zhang ierr = MatSeqSELLSetPreallocation_SeqSELL(*A,maxallocrow,rlen);CHKERRQ(ierr); 2122d4002b98SHong Zhang PetscFunctionReturn(0); 2123d4002b98SHong Zhang } 2124d4002b98SHong Zhang 2125d4002b98SHong Zhang PetscErrorCode MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg) 2126d4002b98SHong Zhang { 2127d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data,*b=(Mat_SeqSELL*)B->data; 2128d4002b98SHong Zhang PetscInt totalslices=a->totalslices; 2129d4002b98SHong Zhang PetscErrorCode ierr; 2130d4002b98SHong Zhang 2131d4002b98SHong Zhang PetscFunctionBegin; 2132d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */ 2133d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) ||(a->nz != b->nz) || (a->rlenmax != b->rlenmax)) { 2134d4002b98SHong Zhang *flg = PETSC_FALSE; 2135d4002b98SHong Zhang PetscFunctionReturn(0); 2136d4002b98SHong Zhang } 2137d4002b98SHong Zhang /* if the a->colidx are the same */ 2138d4002b98SHong Zhang ierr = PetscMemcmp(a->colidx,b->colidx,a->sliidx[totalslices]*sizeof(PetscInt),flg);CHKERRQ(ierr); 2139d4002b98SHong Zhang if (!*flg) PetscFunctionReturn(0); 2140d4002b98SHong Zhang /* if a->val are the same */ 2141d4002b98SHong Zhang ierr = PetscMemcmp(a->val,b->val,a->sliidx[totalslices]*sizeof(PetscScalar),flg);CHKERRQ(ierr); 2142d4002b98SHong Zhang PetscFunctionReturn(0); 2143d4002b98SHong Zhang } 2144d4002b98SHong Zhang 2145d4002b98SHong Zhang PetscErrorCode MatSeqSELLInvalidateDiagonal(Mat A) 2146d4002b98SHong Zhang { 2147d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2148d4002b98SHong Zhang 2149d4002b98SHong Zhang PetscFunctionBegin; 2150d4002b98SHong Zhang a->idiagvalid = PETSC_FALSE; 2151d4002b98SHong Zhang PetscFunctionReturn(0); 2152d4002b98SHong Zhang } 2153d4002b98SHong Zhang 2154d4002b98SHong Zhang PetscErrorCode MatConjugate_SeqSELL(Mat A) 2155d4002b98SHong Zhang { 2156d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX) 2157d4002b98SHong Zhang Mat_SeqSELL *a=(Mat_SeqSELL*)A->data; 2158d4002b98SHong Zhang PetscInt i; 2159d4002b98SHong Zhang PetscScalar *val = a->val; 2160d4002b98SHong Zhang 2161d4002b98SHong Zhang PetscFunctionBegin; 2162d4002b98SHong Zhang for (i=0; i<a->sliidx[a->totalslices]; i++) { 2163d4002b98SHong Zhang val[i] = PetscConj(val[i]); 2164d4002b98SHong Zhang } 2165d4002b98SHong Zhang #else 2166d4002b98SHong Zhang PetscFunctionBegin; 2167d4002b98SHong Zhang #endif 2168d4002b98SHong Zhang PetscFunctionReturn(0); 2169d4002b98SHong Zhang } 2170